RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2132
(48 letters)
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma;
transferase, oligomerisation DOM serine- threonine
kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7
PDB: 2w2c_A 1hkx_A*
Length = 143
Score = 77.5 bits (190), Expect = 7e-21
Identities = 33/48 (68%), Positives = 45/48 (93%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
M+FHKFYF+N++ KN K ++TTILNP+VH++G+DAACIAY+RLTQY+D
Sbjct: 57 MDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYID 104
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain,
transferase; 2.64A {Caenorhabditis elegans} SCOP:
d.17.4.7
Length = 143
Score = 76.8 bits (188), Expect = 2e-20
Identities = 28/48 (58%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
+EFH+FYFD V+TT+LNPNVH++G+DAAC+AYV+LTQ++D
Sbjct: 56 IEFHRFYFDG---NRKNQVHTTMLNPNVHIIGEDAACVAYVKLTQFLD 100
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 69.6 bits (171), Expect = 1e-16
Identities = 29/48 (60%), Positives = 44/48 (91%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
++FH+FYF+N+ +N K V+TTILNP++HL+GD++ACIAY+R+TQY+D
Sbjct: 362 LDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 409
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG; 2.00A
{Salmonella enterica subsp}
Length = 145
Score = 57.7 bits (138), Expect = 5e-13
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNP-NVHLLGDDAACIAYVRLTQYMD 48
+ + ++ +GK + P +H+ G+ A T
Sbjct: 54 SQIAENFYGTTMGKTFSKRTLKLDAPPAIHVYGNAAVAEFDWHFTAVRR 102
>3h51_A Putative calcium/calmodulin dependent protein KIN association
domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas
campestris PV}
Length = 156
Score = 34.4 bits (78), Expect = 4e-04
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
E + YF+ + K K I V LL DD+A A V D
Sbjct: 63 REQIENYFEMFLTKKPKG---VINYRTVRLLDDDSAVDAGVYTFTLTD 107
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint
center for STR genomics, JCSG, protein structure
initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Length = 142
Score = 31.1 bits (70), Expect = 0.005
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLT 44
+ +++ +G + + VH GD A R
Sbjct: 51 KSAYTAHWEMCMGMCTGPMVFELAQLTVHAAGDLALAHWLNRCG 94
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics,
joint center for STR genomics, JCSG; HET: MSE CIT;
1.60A {Cytophaga hutchinsonii atcc 33406} SCOP:
d.17.4.15
Length = 123
Score = 30.0 bits (67), Expect = 0.013
Identities = 1/42 (2%), Positives = 7/42 (16%)
Query: 7 YFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
+ + ++ D + +
Sbjct: 50 DIAAYSSGKIALRAVVPSDYIIRIIHDTVVVSVNIEIKGEYM 91
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural GE consortium, NESG,
NSR435A, DFA5, electron transport; 1.80A {Nostoc SP}
Length = 262
Score = 27.0 bits (60), Expect = 0.15
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTI 23
E ++YF+ ++ + V +
Sbjct: 194 KEDQRYYFNCLMAPHAIHVEAAL 216
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C
structural genomics, JCSG, protein structure initiative;
HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc
8503}
Length = 134
Score = 26.3 bits (57), Expect = 0.32
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
+E + Y+ + A + ++ P V + + A + + + D
Sbjct: 57 LEQLRTYYKGMQL--PPADHFDMIRPVVQVAQ-NIAVLTFNLDSYLSD 101
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR
initiative, PSI, joint center for structural genomics,
ELEC transport; HET: MSE; 1.80A {Thermotoga maritima}
SCOP: c.23.5.1 d.157.1.3
Length = 410
Score = 24.8 bits (54), Expect = 1.2
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTI 23
+ Y V+G +
Sbjct: 203 LPHVTKYIVTVIGHYKNYILEGA 225
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: 1PE; 1.60A {Methanosarcina
maze}
Length = 429
Score = 24.6 bits (54), Expect = 1.2
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 17 KAVNTTILNPNVHLLGDDAAC----IAYVRLTQYMD 48
K V + P V L G+ A IA +D
Sbjct: 260 KPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELD 295
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A
{Methylobacillus flagellatus}
Length = 319
Score = 24.1 bits (53), Expect = 1.9
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 21 TTILNPNVHL-LGDDAACIA 39
+P+ L +GDDAA I
Sbjct: 13 FRRAHPSAVLGVGDDAALIQ 32
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 23.6 bits (51), Expect = 2.8
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTI 23
M K Y N++G + +
Sbjct: 193 MHLFKEYTANILGLFSAQMRKAL 215
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 22.8 bits (49), Expect = 5.1
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 1 MEFHKFYFDNVVGKNCKAVNTTI 23
M+ Y+ N++ + +
Sbjct: 188 MDEAAKYYANILMPFSNLITKKL 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.440
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 729,994
Number of extensions: 25434
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 14
Length of query: 48
Length of database: 6,701,793
Length adjustment: 21
Effective length of query: 27
Effective length of database: 6,115,452
Effective search space: 165117204
Effective search space used: 165117204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)