RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2132
         (48 letters)



>d2f86b1 d.17.4.7 (B:343-471) Association domain of
          calcium/calmodulin-dependent protein kinase type II
          alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId:
          6239]}
          Length = 129

 Score = 30.0 bits (66), Expect = 0.004
 Identities = 24/48 (50%), Positives = 36/48 (75%)

Query: 1  MEFHKFYFDNVVGKNCKAVNTTILNPNVHLLGDDAACIAYVRLTQYMD 48
          +E  +F+     G     V+TT+LNPNVH++G+DAAC+AYV+LTQ++D
Sbjct: 50 IEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGEDAACVAYVKLTQFLD 97


>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase
          {Helicobacter pylori [TaxId: 210]}
          Length = 259

 Score = 21.5 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 11 VVGKNCKAVNTTILNPNVHLLGD 33
          V+G   K      L+ NV L G 
Sbjct: 26 VIGDGVKLDEGVKLHNNVTLQGH 48


>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE
          {Haemophilus influenzae [TaxId: 727]}
          Length = 101

 Score = 21.2 bits (44), Expect = 8.0
 Identities = 6/20 (30%), Positives = 8/20 (40%)

Query: 14 KNCKAVNTTILNPNVHLLGD 33
          K  +A NT     +  L  D
Sbjct: 80 KLAEACNTLKKLDDGKLYAD 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 182,606
Number of extensions: 5137
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 5
Length of query: 48
Length of database: 2,407,596
Length adjustment: 20
Effective length of query: 28
Effective length of database: 2,132,996
Effective search space: 59723888
Effective search space used: 59723888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)