BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2133
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
           From Homo Sapiens At 1.55 A Resolution
 pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
           From Homo Sapiens At 1.55 A Resolution
          Length = 130

 Score =  110 bits (275), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 71/107 (66%), Gaps = 7/107 (6%)

Query: 2   LKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKST-----FDEKDPAR 56
           LK G I+ T  L   S+   GR     + L HP+VSRYHA+LQ++++      D   P  
Sbjct: 26  LKGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGP-- 83

Query: 57  GFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQG 103
           GFY+YDLGSTHGTFLN+ +I P+ Y R+HVGH++ FG STR FILQG
Sbjct: 84  GFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQG 130


>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain
          Length = 145

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 7/107 (6%)

Query: 2   LKSGQIVN-TIDLSTRSFYCVGRERN-THLNLLHPTVSRYHAILQYKSTFDEK-DPARGF 58
            K G+ +N  + L  +S Y  GRER    +   HP+ S+ HA++QY+    EK D   G 
Sbjct: 22  FKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQHAVIQYREXEKEKPDGXXGK 81

Query: 59  ----YVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFIL 101
               Y+ DLGST+ T++N   I+P+ Y  +     + FG+S+R ++L
Sbjct: 82  QVKPYIXDLGSTNKTYINESPIEPQRYYELFEKDTIKFGNSSREYVL 128


>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
          Length = 140

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 2   LKSGQIVNTIDLSTRSFYCVGRERN-THLNLLHPTVSRYHAILQYKSTFDEKDPARGFYV 60
           +K  +++  + +  + +Y  GR  +     + H + SR HA L Y          +  ++
Sbjct: 40  VKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHL------KRVFL 93

Query: 61  YDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQ 102
            DL STHGTFL   +++P    +I +   +SFG+STR + L+
Sbjct: 94  IDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLR 135


>pdb|2JKD|A Chain A, Structure Of The Yeast Pml1 Splicing Factor And Its
           Integration Into The Res Complex
 pdb|2JKD|B Chain B, Structure Of The Yeast Pml1 Splicing Factor And Its
           Integration Into The Res Complex
          Length = 187

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 25/99 (25%)

Query: 12  DLSTRSFYCVGRERNTHLN---------------LLHPTVSRYHAILQYKSTFDEKDPAR 56
           DL+ RS Y VGRE    L+               +   T S+ H ++Q+++        R
Sbjct: 74  DLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRN-------VR 126

Query: 57  GF---YVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSF 92
           G    YV DL S++GT LN   I    Y+ +  G +L+ 
Sbjct: 127 GILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTL 165


>pdb|3ELS|A Chain A, Crystal Structure Of Yeast Pml1p, Residues 51-204
          Length = 158

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 25/99 (25%)

Query: 12  DLSTRSFYCVGRERNTHLN---------------LLHPTVSRYHAILQYKSTFDEKDPAR 56
           DL+ RS Y VGRE    L+               +   T S+ H ++Q+++        R
Sbjct: 51  DLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRN-------VR 103

Query: 57  GF---YVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSF 92
           G    YV DL S++GT LN   I    Y+ +  G +L+ 
Sbjct: 104 GILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTL 142


>pdb|3ELV|A Chain A, Crystal Structure Of Full-Length Yeast Pml1p
 pdb|3ELV|B Chain B, Crystal Structure Of Full-Length Yeast Pml1p
          Length = 205

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 25/99 (25%)

Query: 12  DLSTRSFYCVGRERNTHLN---------------LLHPTVSRYHAILQYKSTFDEKDPAR 56
           DL+ RS Y VGRE    L+               +   T S+ H ++Q+++        R
Sbjct: 98  DLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRN-------VR 150

Query: 57  GF---YVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSF 92
           G    YV DL S++GT LN   I    Y+ +  G +L+ 
Sbjct: 151 GILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTL 189


>pdb|2JQJ|A Chain A, Nmr Structure Of Yeast Dun1 Fha Domain
 pdb|2JQL|A Chain A, Nmr Structure Of The Yeast Dun1 Fha Domain In Complex With
           A Doubly Phosphorylated (Pt) Peptide Derived From Rad53
           Scd1
          Length = 151

 Score = 35.0 bits (79), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 11  IDLSTRSFYCVGRERNTHLNLLHPTVSRYHA---ILQYKSTFDEKDPARGFYVYDLGSTH 67
           ++++ R+   +GR R+  + L  P +S +HA   +LQ     D  +  R        S +
Sbjct: 32  VEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQ----MDVDNFQRNLINVIDKSRN 87

Query: 68  GTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFF 99
           GTF+N  ++  K Y+ +  G  + FG S  F 
Sbjct: 88  GTFINGNRLVKKDYI-LKNGDRIVFGKSCSFL 118


>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
           Thaliana Hypothetical Protein
          Length = 118

 Score = 33.5 bits (75), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 58  FYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFI--LQGP 104
           + + DLGS++GT LN   + P+  V +  G ++  G  T   +  + GP
Sbjct: 67  WVIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVSGP 115


>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
           CalciumCALMODULIN ACTIVATED KINASE II
 pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
           CalciumCALMODULIN ACTIVATED KINASE II
          Length = 362

 Score = 32.7 bits (73), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 4   SGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKS 47
           + +I+NT  LS R F  + RE      L HP + R H  +Q +S
Sbjct: 58  AAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES 101


>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
 pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
 pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
 pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
 pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
          Length = 269

 Score = 32.7 bits (73), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 4  SGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKS 47
          + +I+NT  LS R F  + RE      L HP + R H  +Q +S
Sbjct: 35 AAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES 78


>pdb|3KK9|A Chain A, Camkii Substrate Complex B
          Length = 282

 Score = 32.7 bits (73), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 4  SGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKS 47
          + +I+NT  LS R F  + RE      L HP + R H  +Q +S
Sbjct: 34 AAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES 77


>pdb|3KK8|A Chain A, Camkii Substrate Complex A
          Length = 284

 Score = 32.7 bits (73), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 4  SGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKS 47
          + +I+NT  LS R F  + RE      L HP + R H  +Q +S
Sbjct: 35 AAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES 78


>pdb|2CSW|A Chain A, Solution Structure Of The Fha Domain Of Human Ubiquitin
           Ligase Protein Rnf8
          Length = 145

 Score = 32.3 bits (72), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 36  VSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFG 93
           +SR H +L+       ++P   + + D  S +G +LNR +++P     IH G  +  G
Sbjct: 59  ISRNHCVLK-------QNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLG 109


>pdb|2PIE|A Chain A, Crystal Structure Of The Fha Domain Of Rnf8 In Complex
           With Its Optimal Phosphopeptide
          Length = 138

 Score = 32.3 bits (72), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 36  VSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFG 93
           +SR H +L+       ++P   + + D  S +G +LNR +++P     IH G  +  G
Sbjct: 51  ISRNHCVLK-------QNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLG 101


>pdb|2KFU|A Chain A, Pknb-Phosphorylated Rv1827
          Length = 162

 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 13  LSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLN 72
           L  ++    GR  ++ + L   TVSR HA  + ++          F V D+GS +GT++N
Sbjct: 71  LLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLENNE--------FNVVDVGSLNGTYVN 122

Query: 73  RCKIKPKMYVRIHVGHMLSFGSSTRFFILQGP 104
           R  +   +      G  +  G   R   L GP
Sbjct: 123 REPVDSAVLAN---GDEVQIG-KFRLVFLTGP 150


>pdb|2KB3|A Chain A, Nmr Structure Of The Phosphorylated Form Of Odhi, Podhi
          Length = 143

 Score = 32.0 bits (71), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 20  CVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPK 79
             GR   + + L   TVSR HA  +++    E      F V D+GS +GT++NR   +P+
Sbjct: 69  TAGRHPESDIFLDDVTVSRRHA--EFRINEGE------FEVVDVGSLNGTYVNR---EPR 117

Query: 80  MYVRIHVGHMLSFGSSTRFFILQGP 104
               +  G  +  G   R   L GP
Sbjct: 118 NAQVMQTGDEIQIG-KFRLVFLAGP 141


>pdb|2KB4|A Chain A, Nmr Structure Of The Unphosphorylated Form Of Odhi, Odhi
          Length = 143

 Score = 31.6 bits (70), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 20  CVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPK 79
             GR   + + L   TVSR HA  +++    E      F V D+GS +GT++NR   +P+
Sbjct: 69  TAGRHPESDIFLDDVTVSRRHA--EFRINEGE------FEVVDVGSLNGTYVNR---EPR 117

Query: 80  MYVRIHVGHMLSFGSSTRFFILQGP 104
               +  G  +  G   R   L GP
Sbjct: 118 NAQVMQTGDEIQIG-KFRLVFLAGP 141


>pdb|3HX1|A Chain A, Crystal Structure Of The Slr1951 Protein From
          Synechocystis Sp. Northeast Structural Genomics
          Consortium Target Sgr167a
 pdb|3HX1|B Chain B, Crystal Structure Of The Slr1951 Protein From
          Synechocystis Sp. Northeast Structural Genomics
          Consortium Target Sgr167a
          Length = 131

 Score = 31.2 bits (69), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 13 LSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFD 50
          L T +FY +GR     + +    VSR HA+L  KS+ D
Sbjct: 26 LLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDD 63


>pdb|2KKL|A Chain A, Solution Nmr Structure Of Fha Domain Of Mb1858 From
           Mycobacterium Bovis. Northeast Structural Genomics
           Consortium Target Mbr243c (24-155)
          Length = 140

 Score = 30.0 bits (66), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 8/61 (13%)

Query: 13  LSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLN 72
           L  ++    GR  ++ + L   TVSR HA  +++   +E      F V D+GS +GT++N
Sbjct: 48  LLDQAITSAGRHPDSDIFLDDVTVSRRHA--EFRLENNE------FNVVDVGSLNGTYVN 99

Query: 73  R 73
           R
Sbjct: 100 R 100


>pdb|2XT9|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Alpha-
           Ketoglutarate Decarboxylase In Complex With Gara
          Length = 115

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 18/88 (20%)

Query: 20  CVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPK 79
             GR  ++ + L   TVSR HA  + +           F V D+GS +GT++NR  +   
Sbjct: 34  SAGRHPDSDIFLDDVTVSRRHAEFRLEGGE--------FQVVDVGSLNGTYVNREPVDSA 85

Query: 80  MYVR---IHVGHMLSFGSSTRFFILQGP 104
           +      + +G         R   L GP
Sbjct: 86  VLANGDEVQIGKF-------RLVFLTGP 106


>pdb|1YRQ|A Chain A, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
 pdb|1YRQ|B Chain B, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
 pdb|1YRQ|C Chain C, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
 pdb|1YRQ|D Chain D, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
 pdb|1YRQ|F Chain F, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
 pdb|1YRQ|G Chain G, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
          Length = 264

 Score = 27.7 bits (60), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 5   GQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSR--YHAILQYKSTFDEKDPARGFYVYD 62
           G +V+ +          GR +  +  L+H    R  +    ++  +FD ++  +GF +Y+
Sbjct: 156 GAVVHVLTKGIPDLDSNGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYE 215

Query: 63  LGSTHGTFLNRC 74
           LG       N C
Sbjct: 216 LGCKGPVTYNNC 227


>pdb|1FRF|S Chain S, Crystal Structure Of The Ni-Fe Hydrogenase From
           Desulfovibrio Fructosovorans
          Length = 264

 Score = 27.3 bits (59), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 22  GRERNTHLNLLHPTVSR--YHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRC 74
           GR +  +  L+H    R  +    ++  +FD ++  +GF +Y+LG       N C
Sbjct: 173 GRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNC 227


>pdb|1YQW|A Chain A, Structure Of The Oxidized Unready Form Of Ni-Fe
           Hydrogenase
 pdb|1YQW|B Chain B, Structure Of The Oxidized Unready Form Of Ni-Fe
           Hydrogenase
 pdb|1YQW|C Chain C, Structure Of The Oxidized Unready Form Of Ni-Fe
           Hydrogenase
 pdb|3CUR|A Chain A, Structure Of A Double Methionine Mutant Of Ni-Fe
           Hydrogenase
 pdb|3CUR|B Chain B, Structure Of A Double Methionine Mutant Of Ni-Fe
           Hydrogenase
 pdb|3CUR|C Chain C, Structure Of A Double Methionine Mutant Of Ni-Fe
           Hydrogenase
 pdb|3CUS|A Chain A, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
           Refined At 2.2 Angstrom Resolution
 pdb|3CUS|B Chain B, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
           Refined At 2.2 Angstrom Resolution
 pdb|3CUS|C Chain C, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
           Refined At 2.2 Angstrom Resolution
 pdb|3H3X|A Chain A, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
           Hydrogenase In An Oxidized State
 pdb|3H3X|B Chain B, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
           Hydrogenase In An Oxidized State
 pdb|3H3X|C Chain C, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
           Hydrogenase In An Oxidized State
          Length = 264

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 22  GRERNTHLNLLHPTVSR--YHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRC 74
           GR +  +  L+H    R  +    ++  +FD ++  +GF +Y+LG       N C
Sbjct: 173 GRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNC 227


>pdb|1PZX|A Chain A, Hypothetical Protein Apc36103 From Bacillus
           Stearothermophilus: A Lipid Binding Protein
 pdb|1PZX|B Chain B, Hypothetical Protein Apc36103 From Bacillus
           Stearothermophilus: A Lipid Binding Protein
          Length = 289

 Score = 27.3 bits (59), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 24  ERNTHLNLLHPTVSRYHAILQYKSTFDEKD-PARGFYVYDLGSTHGTFLNRCKIKPKMYV 82
           ++NT  NLL  T+  Y   +++  T D  D  ARG  +    +  G  LN   IKP ++V
Sbjct: 140 KQNTPYNLLCETIESYCRHMEHIFTVDNLDYLARGGRISKTAAAFGGLLN---IKPLLHV 196


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,499,032
Number of Sequences: 62578
Number of extensions: 203656
Number of successful extensions: 527
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 24
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)