Query psy2133
Match_columns 207
No_of_seqs 224 out of 1444
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 16:53:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h87_A Kanadaptin; FHA domain 100.0 9.1E-31 3.1E-35 205.8 12.7 103 1-103 25-130 (130)
2 3els_A PRE-mRNA leakage protei 99.9 7.9E-25 2.7E-29 177.3 8.1 92 1-96 36-146 (158)
3 3elv_A PRE-mRNA leakage protei 99.9 1.2E-24 4.2E-29 182.9 7.7 92 1-96 83-193 (205)
4 2jpe_A Nuclear inhibitor of pr 99.9 2.3E-24 8E-29 170.4 4.0 98 2-105 40-138 (140)
5 3gqs_A Adenylate cyclase-like 99.9 1.5E-22 5.2E-27 152.7 11.4 91 4-103 12-103 (106)
6 3va4_A Mediator of DNA damage 99.9 3.5E-22 1.2E-26 157.3 10.2 92 7-105 36-129 (132)
7 1uht_A Expressed protein; FHA 99.9 2.4E-22 8.3E-27 154.2 8.7 85 9-101 25-110 (118)
8 3po8_A RV0020C protein, putati 99.9 1.4E-21 4.9E-26 145.8 11.8 83 8-102 15-97 (100)
9 2xt9_B Putative signal transdu 99.9 9.6E-22 3.3E-26 150.5 11.0 82 9-102 24-105 (115)
10 2jqj_A DNA damage response pro 99.9 1.3E-21 4.3E-26 156.6 11.7 99 8-108 29-128 (151)
11 2pie_A E3 ubiquitin-protein li 99.9 1.2E-21 4.2E-26 154.5 9.5 84 4-94 15-102 (138)
12 1mzk_A Kinase associated prote 99.9 1.9E-21 6.6E-26 153.6 10.4 92 9-106 20-123 (139)
13 1r21_A Antigen KI-67; beta san 99.9 3E-21 1E-25 150.1 10.6 88 5-103 22-109 (128)
14 3hx1_A SLR1951 protein; P74513 99.8 3.3E-21 1.1E-25 151.2 10.0 97 3-106 17-118 (131)
15 2kb3_A Oxoglutarate dehydrogen 99.8 4.4E-21 1.5E-25 152.9 10.5 81 9-101 59-139 (143)
16 1dmz_A Protein (protein kinase 99.8 4.7E-21 1.6E-25 154.7 9.0 95 9-104 18-125 (158)
17 1lgp_A Cell cycle checkpoint p 99.8 5.7E-21 1.9E-25 146.0 8.9 91 7-105 15-112 (116)
18 2csw_A Ubiquitin ligase protei 99.8 2.8E-21 9.6E-26 153.7 7.0 85 4-95 23-111 (145)
19 2kfu_A RV1827 PThr 22; FHA dom 99.8 1.5E-20 5.1E-25 152.8 11.2 81 9-101 68-148 (162)
20 1gxc_A CHK2, CDS1, serine/thre 99.8 3.3E-20 1.1E-24 148.2 10.6 89 10-103 42-140 (149)
21 3oun_A Putative uncharacterize 99.8 4E-20 1.4E-24 149.7 11.2 80 8-99 77-156 (157)
22 1qu5_A Protein kinase SPK1; FH 99.8 9.4E-21 3.2E-25 156.5 7.6 93 10-103 43-148 (182)
23 1g3g_A Protien kinase SPK1; FH 99.8 4.3E-20 1.5E-24 149.8 10.3 80 17-104 64-148 (164)
24 1g6g_A Protein kinase RAD53; b 99.8 4.6E-20 1.6E-24 143.5 9.6 80 17-104 36-120 (127)
25 2ff4_A Probable regulatory pro 99.8 2.8E-19 9.7E-24 161.3 12.2 85 9-104 299-383 (388)
26 1wln_A Afadin; beta sandwich, 99.8 3.3E-19 1.1E-23 137.4 10.1 86 9-106 29-116 (120)
27 4ejq_A Kinesin-like protein KI 99.7 5.5E-18 1.9E-22 136.3 10.4 86 11-104 56-144 (154)
28 3fm8_A Kinesin-like protein KI 99.7 1.2E-16 4.2E-21 124.5 11.4 81 11-104 44-124 (124)
29 3huf_A DNA repair and telomere 99.7 9.8E-17 3.4E-21 142.2 8.8 96 10-106 15-116 (325)
30 3uv0_A Mutator 2, isoform B; F 99.6 1.1E-15 3.9E-20 114.7 9.5 80 10-102 14-100 (102)
31 4a0e_A YSCD, type III secretio 99.5 1.9E-13 6.5E-18 106.3 10.7 82 10-104 18-100 (123)
32 3i6u_A CDS1, serine/threonine- 99.4 4.2E-13 1.4E-17 120.7 8.5 82 10-96 22-112 (419)
33 3kt9_A Aprataxin; FHA domain, 99.4 3.3E-12 1.1E-16 96.4 10.9 85 9-102 15-99 (102)
34 4egx_A Kinesin-like protein KI 99.2 6.5E-11 2.2E-15 97.7 10.9 86 11-104 86-174 (184)
35 2brf_A Bifunctional polynucleo 99.1 3.2E-10 1.1E-14 86.5 9.3 84 9-101 20-106 (110)
36 1wv3_A Similar to DNA segregat 99.1 2.9E-10 9.9E-15 97.0 8.8 74 13-99 89-166 (238)
37 1ujx_A Polynucleotide kinase 3 99.0 3.9E-10 1.3E-14 87.2 5.0 87 10-105 28-117 (119)
38 1yj5_C 5' polynucleotide kinas 98.9 2.2E-09 7.6E-14 85.1 8.3 84 9-101 20-106 (143)
39 1wv3_A Similar to DNA segregat 88.2 0.91 3.1E-05 38.0 6.1 46 5-60 9-54 (238)
40 2co3_A SAFA pilus subunit; adh 51.4 6.7 0.00023 30.3 1.9 46 28-81 79-126 (137)
41 3mml_A Allophanate hydrolase s 48.5 34 0.0012 29.9 6.2 41 64-104 78-121 (318)
42 1p9k_A ORF, hypothetical prote 42.4 16 0.00056 24.7 2.6 30 66-97 45-75 (79)
43 2q5w_D Molybdopterin convertin 41.8 25 0.00085 23.2 3.4 23 68-92 48-70 (77)
44 2k6p_A Uncharacterized protein 41.7 21 0.00072 24.6 3.2 26 67-94 26-51 (92)
45 1dm9_A Hypothetical 15.5 KD pr 40.1 27 0.00094 26.3 3.8 33 67-101 34-68 (133)
46 2k5p_A THis protein, thiamine- 39.1 15 0.0005 25.3 1.9 26 67-92 35-62 (78)
47 2cu3_A Unknown function protei 37.1 17 0.00057 23.6 1.9 24 69-92 32-57 (64)
48 3hvz_A Uncharacterized protein 35.4 24 0.00082 24.3 2.5 24 67-92 42-65 (78)
49 1fm0_D Molybdopterin convertin 34.7 31 0.0011 22.9 3.1 23 68-92 52-74 (81)
50 3po0_A Small archaeal modifier 34.4 39 0.0013 23.0 3.6 25 66-92 58-82 (89)
51 2k9x_A Tburm1, uncharacterized 33.8 15 0.00052 27.0 1.4 24 69-92 70-95 (110)
52 2kl0_A Putative thiamin biosyn 33.3 12 0.00041 25.4 0.7 25 68-92 32-58 (73)
53 1ryj_A Unknown; beta/alpha pro 33.1 35 0.0012 22.5 3.0 22 69-92 42-63 (70)
54 1tyg_B YJBS; alpha beta barrel 31.8 23 0.00077 25.0 2.0 24 69-92 55-80 (87)
55 2l52_A Methanosarcina acetivor 31.8 16 0.00055 25.9 1.2 28 65-92 63-92 (99)
56 2hj1_A Hypothetical protein; s 30.5 25 0.00084 25.4 2.0 27 66-94 58-84 (97)
57 3oep_A Putative uncharacterize 30.1 65 0.0022 29.8 5.2 41 64-104 295-338 (494)
58 1vjk_A Molybdopterin convertin 29.9 32 0.0011 24.1 2.5 23 68-92 69-91 (98)
59 3dwg_C 9.5 kDa culture filtrat 29.5 33 0.0011 23.6 2.5 26 67-92 59-86 (93)
60 3ega_A Pellino-2, protein pell 28.9 2.3E+02 0.0077 24.0 7.9 31 18-48 89-136 (263)
61 1m0f_B GPB, scaffolding protei 28.3 12 0.00039 25.4 -0.1 23 72-94 45-67 (68)
62 1uil_A Double-stranded RNA-bin 28.1 12 0.00041 27.6 -0.1 28 175-202 19-46 (113)
63 1wgk_A Riken cDNA 2900073H19 p 26.7 19 0.00064 26.6 0.8 24 69-92 76-101 (114)
64 2g1e_A Hypothetical protein TA 26.1 30 0.001 23.4 1.7 25 68-92 57-83 (90)
65 3rpf_C Molybdopterin convertin 25.6 35 0.0012 22.6 2.0 25 67-92 43-67 (74)
66 2qjl_A URM1, ubiquitin-related 24.0 46 0.0016 23.3 2.5 24 69-92 67-92 (99)
67 1f0z_A THis protein; ubiquitin 23.6 16 0.00054 23.9 -0.2 25 68-92 33-59 (66)
68 1c05_A Ribosomal protein S4 de 23.5 56 0.0019 25.3 3.0 26 67-94 76-102 (159)
69 1rws_A Hypothetical protein PF 22.0 21 0.00073 24.0 0.3 23 68-92 48-70 (77)
No 1
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.97 E-value=9.1e-31 Score=205.83 Aligned_cols=103 Identities=51% Similarity=0.885 Sum_probs=91.2
Q ss_pred CccCCeeeeEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecC---CcCCCCeEEEEECCCccceeecCeEcC
Q psy2133 1 ELKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFD---EKDPARGFYVYDLGSTHGTFLNRCKIK 77 (207)
Q Consensus 1 ~lK~G~ii~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~---~~~~~~~~~l~Dl~StnGTfVNg~rI~ 77 (207)
++|+|.+++++.|..++.++|||.++|||+|+||+|||+||+|+++.... ....++.|+|+||+|+|||||||++|.
T Consensus 25 v~k~g~~~~~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~ri~ 104 (130)
T 4h87_A 25 TLKGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIP 104 (130)
T ss_dssp EEETTEEEEEEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTEECC
T ss_pred EEECCeeeeeEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCEECC
Confidence 57999999999999989999999999999999999999999999863221 011357899999999999999999999
Q ss_pred CCceEEecCCCEEEEcCeeeEEEEeC
Q psy2133 78 PKMYVRIHVGHMLSFGSSTRFFILQG 103 (207)
Q Consensus 78 ~~~~~~L~~Gd~I~fG~s~~~fil~~ 103 (207)
+++++.|++||+|+||.+++.|+|+|
T Consensus 105 ~~~~~~L~~GD~I~~G~str~yvl~G 130 (130)
T 4h87_A 105 PRTYCRVHVGHVVRFGGSTRLFILQG 130 (130)
T ss_dssp TTCCEECCTTCEEEETTCSEEEEEEC
T ss_pred CCceeECCCCCEEEECCceEEEEEcC
Confidence 99999999999999999999999986
No 2
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.9e-25 Score=177.31 Aligned_cols=92 Identities=28% Similarity=0.439 Sum_probs=80.8
Q ss_pred CccCCe----eeeEEEcCCCCeEEEccCC---------------CCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEE
Q psy2133 1 ELKSGQ----IVNTIDLSTRSFYCVGRER---------------NTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVY 61 (207)
Q Consensus 1 ~lK~G~----ii~~i~L~~~~~~~IGR~~---------------~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~ 61 (207)
++|+|. +++++.|..++.++|||.+ .|||+|+||+|||.||+|++.... +...|+|+
T Consensus 36 v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~----~~~~~~l~ 111 (158)
T 3els_A 36 IYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVR----GILKCYVM 111 (158)
T ss_dssp EEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEET----TEEEEEEE
T ss_pred EEeCCccCcccceEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccC----CeeEEEEE
Confidence 367887 8999999999999999995 499999999999999999998310 01139999
Q ss_pred ECCCccceeecCeEcCCCceEEecCCCEEEEcCee
Q psy2133 62 DLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSST 96 (207)
Q Consensus 62 Dl~StnGTfVNg~rI~~~~~~~L~~Gd~I~fG~s~ 96 (207)
||+|+|||||||++|.++.++.|++||+|+||.++
T Consensus 112 Dl~StNGT~VNg~ri~~~~~~~L~~GD~I~~G~s~ 146 (158)
T 3els_A 112 DLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFE 146 (158)
T ss_dssp ECSCSSCCEETTEECCTTCCEECCTTEEEESSSCG
T ss_pred eCCCCCccEECCEEcCCCceEEcCCCCEEEECCCC
Confidence 99999999999999999999999999999999764
No 3
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.90 E-value=1.2e-24 Score=182.85 Aligned_cols=92 Identities=28% Similarity=0.439 Sum_probs=81.0
Q ss_pred CccCCe----eeeEEEcCCCCeEEEccCC---------------CCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEE
Q psy2133 1 ELKSGQ----IVNTIDLSTRSFYCVGRER---------------NTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVY 61 (207)
Q Consensus 1 ~lK~G~----ii~~i~L~~~~~~~IGR~~---------------~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~ 61 (207)
|+|+|. +++++.|..++.|+|||.+ .|||+|+||+|||+||+|++.... +...|+|+
T Consensus 83 v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~----~~~~~~l~ 158 (205)
T 3elv_A 83 IYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVR----GILKCYVM 158 (205)
T ss_dssp EEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEET----TEEEEEEE
T ss_pred EEeCCCcccccceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCC----CceeEEEE
Confidence 467887 8999999988999999996 399999999999999999998321 01259999
Q ss_pred ECCCccceeecCeEcCCCceEEecCCCEEEEcCee
Q psy2133 62 DLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSST 96 (207)
Q Consensus 62 Dl~StnGTfVNg~rI~~~~~~~L~~Gd~I~fG~s~ 96 (207)
||+|+|||||||++|.++.++.|++||+|+||.++
T Consensus 159 DLgStNGTfVNG~rI~~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 159 DLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp ECSCSSCCEETTEECCBTSCEECCTTCEEESSSSG
T ss_pred eCCCCCCCeECCEECCCCceeECCCCCEEEECCCC
Confidence 99999999999999999999999999999999765
No 4
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.89 E-value=2.3e-24 Score=170.41 Aligned_cols=98 Identities=30% Similarity=0.588 Sum_probs=87.3
Q ss_pred ccCCeeeeEEEcCCCCeEEEccCCC-CcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCc
Q psy2133 2 LKSGQIVNTIDLSTRSFYCVGRERN-THLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80 (207)
Q Consensus 2 lK~G~ii~~i~L~~~~~~~IGR~~~-cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~ 80 (207)
++++....++.|..+..++|||.+. |||+|++++|||.||.|.+.. .++.|+|.||+|+|||||||++|.++.
T Consensus 40 ~~g~~~g~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~------~~~~~~l~Dl~S~NGT~vNg~~l~~~~ 113 (140)
T 2jpe_A 40 VKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHK------HLKRVFLIDLNSTHGTFLGHIRLEPHK 113 (140)
T ss_dssp ESSSSEEEEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBS------SSCCEEEECCSCSSCEESSSCEECSSS
T ss_pred EcCCCcceEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEEC------CCCcEEEEECCCCCCeEECCEECCCCc
Confidence 4566677789998866789999998 999999999999999999982 137899999999999999999999988
Q ss_pred eEEecCCCEEEEcCeeeEEEEeCCC
Q psy2133 81 YVRIHVGHMLSFGSSTRFFILQGPS 105 (207)
Q Consensus 81 ~~~L~~Gd~I~fG~s~~~fil~~p~ 105 (207)
++.|++||+|+||.+.+.|++..++
T Consensus 114 ~~~L~~gd~i~~G~~~~~f~~~~~p 138 (140)
T 2jpe_A 114 PQQIPIDSTVSFGASTRAYTLREKP 138 (140)
T ss_dssp CCEECTTCCBBCSSCCCCBCCBCCC
T ss_pred cEECCCCCEEEECCceEEEEEecCC
Confidence 8999999999999999989887654
No 5
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.88 E-value=1.5e-22 Score=152.74 Aligned_cols=91 Identities=20% Similarity=0.320 Sum_probs=78.8
Q ss_pred CCeeeeEEEcCCCCeEEEccCC-CCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceE
Q psy2133 4 SGQIVNTIDLSTRSFYCVGRER-NTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYV 82 (207)
Q Consensus 4 ~G~ii~~i~L~~~~~~~IGR~~-~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~ 82 (207)
+...-..+.|..+..++|||.+ .|||++++++|||.||.|.+. .++.|+|.|++|+|||||||++|.+ ++
T Consensus 12 G~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~-------~~~~~~l~Dl~S~nGt~vng~~i~~--~~ 82 (106)
T 3gqs_A 12 GANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIG-------NDNSVLIEDLGSKNGVIVEGRKIEH--QS 82 (106)
T ss_dssp -CCTTCEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEEC-------TTSCEEEEECSCSSCCEETTEECSS--EE
T ss_pred CCCCcEEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEEC-------CCCcEEEEECcCCCCeEECCEECCC--Ce
Confidence 3344457888887778999999 799999999999999999997 2577999999999999999999986 46
Q ss_pred EecCCCEEEEcCeeeEEEEeC
Q psy2133 83 RIHVGHMLSFGSSTRFFILQG 103 (207)
Q Consensus 83 ~L~~Gd~I~fG~s~~~fil~~ 103 (207)
.|++||+|+||.+.+.|.-..
T Consensus 83 ~L~~Gd~i~~G~~~~~~~~~~ 103 (106)
T 3gqs_A 83 TLSANQVVALGTTLFLLVDYA 103 (106)
T ss_dssp ECCTTCCEEETTEEEEEEEEC
T ss_pred ECCCCCEEEECCEEEEEEccC
Confidence 899999999999988776543
No 6
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.87 E-value=3.5e-22 Score=157.27 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=80.4
Q ss_pred eeeEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeE--cCCCceEEe
Q psy2133 7 IVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCK--IKPKMYVRI 84 (207)
Q Consensus 7 ii~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~r--I~~~~~~~L 84 (207)
.-..+.|.. ..++|||.+.|||++++++|||.||.|.+.. .++.|+|.|++|+|||||||.+ |.++.++.|
T Consensus 36 ~g~~~~L~~-~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~------~~~~~~l~Dl~S~NGT~vNg~~i~l~~~~~~~L 108 (132)
T 3va4_A 36 PERDFPLYL-GKNVVGRSPDCSVALPFPSISKQHAVIEISA------WNKAPILQDCGSLNGTQIVKPPRVLPPGVSHRL 108 (132)
T ss_dssp SCEEEEECS-EEEEEESSTTSSEECCCTTSCTTCEEEEECS------TTSCCEEEECSCSSCEEETTTTEEECTTCCEEC
T ss_pred CceEEEECC-CCEEEccCCCCCEEeCCCCcChhHEEEEEEc------CCCEEEEEECCCCCCeEECCEEcccCCCCEEEC
Confidence 345677776 5689999999999999999999999999972 1578999999999999999987 688888999
Q ss_pred cCCCEEEEcCeeeEEEEeCCC
Q psy2133 85 HVGHMLSFGSSTRFFILQGPS 105 (207)
Q Consensus 85 ~~Gd~I~fG~s~~~fil~~p~ 105 (207)
++||+|+||.+.+.|+...++
T Consensus 109 ~~GD~I~lG~~~l~f~~~~~p 129 (132)
T 3va4_A 109 RDQELILFADFPCQYHRLDVP 129 (132)
T ss_dssp CTTCEEEETTEEEEEEECCCC
T ss_pred CCCCEEEECCEEEEEEECCCC
Confidence 999999999999999886554
No 7
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.87 E-value=2.4e-22 Score=154.16 Aligned_cols=85 Identities=25% Similarity=0.443 Sum_probs=76.2
Q ss_pred eEEEcCCCCeEEEccC-CCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCC
Q psy2133 9 NTIDLSTRSFYCVGRE-RNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVG 87 (207)
Q Consensus 9 ~~i~L~~~~~~~IGR~-~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~G 87 (207)
..+.|..+..++|||. +.|||+|+++.|||.||.|.+. ++.|+|.|++|+|||||||++|.++.++.|++|
T Consensus 25 ~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~--------~~~~~l~Dl~S~nGT~vng~~l~~~~~~~L~~g 96 (118)
T 1uht_A 25 DALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD--------SGNWVIQDLGSSNGTLLNSNALDPETSVNLGDG 96 (118)
T ss_dssp CBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEEC--------SSSEEEECCCCSSCCEESSSBCCTTCEEECCTT
T ss_pred cEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEE--------CCEEEEEECCCCCCeEECCEECCCCCeEEcCCC
Confidence 3566776567899999 7999999999999999999997 688999999999999999999999889999999
Q ss_pred CEEEEcCeeeEEEE
Q psy2133 88 HMLSFGSSTRFFIL 101 (207)
Q Consensus 88 d~I~fG~s~~~fil 101 (207)
|+|+||...+.|+.
T Consensus 97 d~i~lG~~~~~~~~ 110 (118)
T 1uht_A 97 DVIKLGEYTSILVN 110 (118)
T ss_dssp EEEEETTTEEEEEE
T ss_pred CEEEECCeEEEEEE
Confidence 99999998755533
No 8
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.87 E-value=1.4e-21 Score=145.83 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=75.3
Q ss_pred eeEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCC
Q psy2133 8 VNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVG 87 (207)
Q Consensus 8 i~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~G 87 (207)
-..+.|.. ..++|||.+.|||++++|.|||.||.|.+. ++.|+|.|++|+|||||||+++. ++.|++|
T Consensus 15 g~~~~l~~-~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--------~~~~~l~Dl~S~nGt~vng~~i~---~~~L~~g 82 (100)
T 3po8_A 15 GRTYQLRE-GSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--------GQVALLADLNSTNGTTVNNAPVQ---EWQLADG 82 (100)
T ss_dssp CCEEECCS-EEEEEESSTTCSEECCCTTSCSSCEEEEEC--------SSCEEEEECSCSSCCEETTEECS---EEECCTT
T ss_pred CcEEEECC-CCEEEeCCCCCCEECCCCCcChhhCEEEEe--------CCEEEEEECCCCCCEEECCEECc---eEECCCC
Confidence 34677877 568999999999999999999999999997 67899999999999999999997 4789999
Q ss_pred CEEEEcCeeeEEEEe
Q psy2133 88 HMLSFGSSTRFFILQ 102 (207)
Q Consensus 88 d~I~fG~s~~~fil~ 102 (207)
|+|+||...+.|.+.
T Consensus 83 d~i~iG~~~~~~~~~ 97 (100)
T 3po8_A 83 DVIRLGHSEIIVRMH 97 (100)
T ss_dssp CEEEETTEEEEEEEE
T ss_pred CEEEECCEEEEEEEE
Confidence 999999999888775
No 9
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.86 E-value=9.6e-22 Score=150.47 Aligned_cols=82 Identities=27% Similarity=0.377 Sum_probs=73.3
Q ss_pred eEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCC
Q psy2133 9 NTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGH 88 (207)
Q Consensus 9 ~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd 88 (207)
..+.|.. ..++|||.+.|||+|++++|||.||.|.+. ++.|+|.|++|+|||||||.+|. .+.|++||
T Consensus 24 ~~~~l~~-~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--------~~~~~l~Dl~S~nGt~vng~~i~---~~~L~~gd 91 (115)
T 2xt9_B 24 SRFLLDQ-PTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--------GGEFQVVDVGSLNGTYVNREPVD---SAVLANGD 91 (115)
T ss_dssp CEEEECS-SEEEEESSTTSSEECCSTTSCSSCEEEEEE--------TTEEEEEECSCSSCEEETTEECS---EEEECTTC
T ss_pred eEEEECC-CCEEECCCCCCCEEeCCcccChhheEEEEE--------CCEEEEEECCCCCCeEECCEEcc---eEECCCCC
Confidence 4567776 578999999999999999999999999998 78999999999999999999997 47899999
Q ss_pred EEEEcCeeeEEEEe
Q psy2133 89 MLSFGSSTRFFILQ 102 (207)
Q Consensus 89 ~I~fG~s~~~fil~ 102 (207)
+|+||...+.|...
T Consensus 92 ~i~iG~~~l~~~~~ 105 (115)
T 2xt9_B 92 EVQIGKFRLVFLTG 105 (115)
T ss_dssp EEEETTEEEEEEC-
T ss_pred EEEECCEEEEEEeC
Confidence 99999988776543
No 10
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.86 E-value=1.3e-21 Score=156.63 Aligned_cols=99 Identities=23% Similarity=0.366 Sum_probs=79.6
Q ss_pred eeEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCC
Q psy2133 8 VNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVG 87 (207)
Q Consensus 8 i~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~G 87 (207)
-..+.|..+..++|||.+.|||+|.+++|||.||.|.+.......+.++.|+|.|+ |+|||||||++|.++ ++.|++|
T Consensus 29 g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~Dl-S~NGT~VNg~~i~~~-~~~L~~G 106 (151)
T 2jqj_A 29 EQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDK-SRNGTFINGNRLVKK-DYILKNG 106 (151)
T ss_dssp EEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEETTEECCSS-CEEECSS
T ss_pred ceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEEC-CCCCeEECCEEcCCC-ceECCCC
Confidence 34677775567899999999999999999999999999311000001578999999 999999999999988 8899999
Q ss_pred CEEEEcCe-eeEEEEeCCCCCc
Q psy2133 88 HMLSFGSS-TRFFILQGPSEDE 108 (207)
Q Consensus 88 d~I~fG~s-~~~fil~~p~~~~ 108 (207)
|+|+||.+ .+.|.+..+....
T Consensus 107 D~I~lG~~~~~~f~~~~~~~~~ 128 (151)
T 2jqj_A 107 DRIVFGKSCSFLFKYASSSSTD 128 (151)
T ss_dssp EEEEETTTEEEEEEECSSCCCC
T ss_pred CEEEECCCcEEEEEEcCCCccc
Confidence 99999994 6777776655443
No 11
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.86 E-value=1.2e-21 Score=154.52 Aligned_cols=84 Identities=26% Similarity=0.419 Sum_probs=76.1
Q ss_pred CCeeeeEEEcCCCCeEEEccCCCCcEEeCCCC----cCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCC
Q psy2133 4 SGQIVNTIDLSTRSFYCVGRERNTHLNLLHPT----VSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPK 79 (207)
Q Consensus 4 ~G~ii~~i~L~~~~~~~IGR~~~cDv~l~~ps----VSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~ 79 (207)
.|.....+.|..+..++|||.+.|||+|++++ |||.||.|.+. .++.|+|.|++|+|||||||.+|.++
T Consensus 15 ~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~-------~~g~~~l~Dl~S~NGT~vNg~~l~~~ 87 (138)
T 2pie_A 15 VGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQN-------PEGQWTIMDNKSLNGVWLNRARLEPL 87 (138)
T ss_dssp TTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEEC-------TTSCEEEEECSCSSCEEETTEECCTT
T ss_pred eCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEc-------CCCcEEEEECCCCCCeEECCEEcCCC
Confidence 45555678888667889999999999999998 99999999995 26789999999999999999999998
Q ss_pred ceEEecCCCEEEEcC
Q psy2133 80 MYVRIHVGHMLSFGS 94 (207)
Q Consensus 80 ~~~~L~~Gd~I~fG~ 94 (207)
.++.|++||+|+||.
T Consensus 88 ~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 88 RVYSIHQGDYIQLGV 102 (138)
T ss_dssp CCEECCTTCEEEESC
T ss_pred CcEECCCCCEEEECC
Confidence 899999999999998
No 12
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.85 E-value=1.9e-21 Score=153.58 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=78.1
Q ss_pred eEEEcCCC----CeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCC------
Q psy2133 9 NTIDLSTR----SFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKP------ 78 (207)
Q Consensus 9 ~~i~L~~~----~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~------ 78 (207)
.++.|... ..++|||.+.|||+|++++|||+||.|.+.. .++.|+|.|++|+|||||||++|.+
T Consensus 20 ~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~------~~~~~~l~DlgS~NGT~vNg~~i~~~~~~~~ 93 (139)
T 1mzk_A 20 LQHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNS------TKFKWELVDMGSLNGTLVNSHSISHPDLGSR 93 (139)
T ss_dssp CEEEECTTCSTTCSEEEESSSSCSEECCCTTSSSEEEEEEEET------TTTEEEEEETTCSSCCEETTEESSCCCTTTC
T ss_pred eEEEecCCCCccceEEeeCCCCCCEEeCCCCCChHHcEEEEEC------CCCEEEEEECCCCCCEEECCEECcCcccccc
Confidence 46777663 3689999999999999999999999999982 1247999999999999999999984
Q ss_pred --CceEEecCCCEEEEcCeeeEEEEeCCCC
Q psy2133 79 --KMYVRIHVGHMLSFGSSTRFFILQGPSE 106 (207)
Q Consensus 79 --~~~~~L~~Gd~I~fG~s~~~fil~~p~~ 106 (207)
+.++.|++||+|+||.+.+.|+...+.+
T Consensus 94 ~~~~~~~L~~GD~I~iG~~~~~~~~~~~~~ 123 (139)
T 1mzk_A 94 KWGNPVELASDDIITLGTTTKVYVRISSQN 123 (139)
T ss_dssp CCCCCEECCTTEEEECSSSCEEEEEEEECC
T ss_pred cCCceEECCCCCEEEECCEEEEEEEcCCCc
Confidence 6789999999999999998876654433
No 13
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.85 E-value=3e-21 Score=150.12 Aligned_cols=88 Identities=20% Similarity=0.230 Sum_probs=77.8
Q ss_pred CeeeeEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEe
Q psy2133 5 GQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRI 84 (207)
Q Consensus 5 G~ii~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L 84 (207)
+..-..+.|.. ..++|||.+.|||+|++++|||.||.|.+. ++.|+|.|++|+|||||||++|.. ++.|
T Consensus 22 ~~~g~~~~l~~-~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~--------~~~~~l~Dl~S~nGt~vNg~~i~~--~~~L 90 (128)
T 1r21_A 22 GVDGPHFPLSL-STCLFGRGIECDIRIQLPVVSKQHCKIEIH--------EQEAILHNFSSTNPTQVNGSVIDE--PVRL 90 (128)
T ss_dssp TEEEEEEECCS-SEEEEESSTTSSEECCCTTSCTTCEEEEEC--------SSCEEECCCCSSSCCEETTEECSS--CEEC
T ss_pred CCCceEEEECC-CCEEECCCCCCCEEECCCCCChhHEEEEEE--------CCEEEEEECCCCCCEEECCEECCC--cEEc
Confidence 45556788876 678999999999999999999999999998 688999999999999999999984 5799
Q ss_pred cCCCEEEEcCeeeEEEEeC
Q psy2133 85 HVGHMLSFGSSTRFFILQG 103 (207)
Q Consensus 85 ~~Gd~I~fG~s~~~fil~~ 103 (207)
++||+|+||...+.|....
T Consensus 91 ~~Gd~i~iG~~~~~~~~~~ 109 (128)
T 1r21_A 91 KHGDVITIIDRSFRYENES 109 (128)
T ss_dssp CTTEEEECSSCEEEEEEC-
T ss_pred CCCCEEEECCEEEEEEeCC
Confidence 9999999999887776643
No 14
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.85 E-value=3.3e-21 Score=151.23 Aligned_cols=97 Identities=23% Similarity=0.313 Sum_probs=76.2
Q ss_pred cCCeeeeEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEEC-----CCccceeecCeEcC
Q psy2133 3 KSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDL-----GSTHGTFLNRCKIK 77 (207)
Q Consensus 3 K~G~ii~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl-----~StnGTfVNg~rI~ 77 (207)
+++.....+.|.. ..++|||.+.|||+|++|+|||.||.|.+..... +...|+|.|+ +|+|||||||++|.
T Consensus 17 ~~~~~~~~~~l~~-~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~---g~~~~~l~Dl~~~~~~S~NGT~vNg~~i~ 92 (131)
T 3hx1_A 17 LDDAGRREVLLTE-TFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDD---VQAAYRIIDGDEDGQSSVNGLMINGKKVQ 92 (131)
T ss_dssp EETTEEEEEEECS-SEEEEESSTTSSEECCCSSSCTTCEEEEEC---------CCEEEEESCTTSCCCSSCEEETTEEES
T ss_pred ECCCCcEEEEECC-CCEEECCCCCCCEEECCCCcChhheEEEEEccCC---CceEEEEEECCCCCCCCCCceEECCEEeE
Confidence 3444456778877 5789999999999999999999999999863210 1235999999 79999999999998
Q ss_pred CCceEEecCCCEEEEcCeeeEEEEeCCCC
Q psy2133 78 PKMYVRIHVGHMLSFGSSTRFFILQGPSE 106 (207)
Q Consensus 78 ~~~~~~L~~Gd~I~fG~s~~~fil~~p~~ 106 (207)
. +.|++||+|+||...+.|....+.+
T Consensus 93 ~---~~L~~GD~I~iG~~~~~~~~~~~~d 118 (131)
T 3hx1_A 93 E---HIIQTGDEIVMGPQVSVRYEYRRRD 118 (131)
T ss_dssp E---EECCTTCEEECSTTCEEEEEEECC-
T ss_pred e---EECCCCCEEEECCEEEEEEEEecCC
Confidence 5 7899999999999876655544433
No 15
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.85 E-value=4.4e-21 Score=152.85 Aligned_cols=81 Identities=27% Similarity=0.354 Sum_probs=73.4
Q ss_pred eEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCC
Q psy2133 9 NTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGH 88 (207)
Q Consensus 9 ~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd 88 (207)
..+.|.. ..++|||.+.|||+|++++|||+||.|.+. ++.|+|.|++|+|||||||++|. .+.|++||
T Consensus 59 ~~~~L~~-~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--------~~~~~l~DlgS~NGT~VNg~~i~---~~~L~~GD 126 (143)
T 2kb3_A 59 ARFLLDQ-PTTTAGRHPESDIFLDDVTVSRRHAEFRIN--------EGEFEVVDVGSLNGTYVNREPRN---AQVMQTGD 126 (143)
T ss_dssp CEEEECS-SEEEESSCTTCSBCCCCSSCCSSSEEEEEE--------TTEEEEEESCCSSCCEETTEECS---EEECCTTE
T ss_pred eEEEeCC-CCeeccCCCCCCEEeCCCCcChhhEEEEEE--------CCEEEEEECCCcCCeEECCEEcc---eEECCCCC
Confidence 4567765 678999999999999999999999999998 78999999999999999999997 47899999
Q ss_pred EEEEcCeeeEEEE
Q psy2133 89 MLSFGSSTRFFIL 101 (207)
Q Consensus 89 ~I~fG~s~~~fil 101 (207)
+|+||...+.|..
T Consensus 127 ~I~iG~~~l~f~~ 139 (143)
T 2kb3_A 127 EIQIGKFRLVFLA 139 (143)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEECCEEEEEEe
Confidence 9999998877754
No 16
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.84 E-value=4.7e-21 Score=154.73 Aligned_cols=95 Identities=12% Similarity=0.183 Sum_probs=78.7
Q ss_pred eEEEcCCC-CeEEEccCCCCcEEeCCCCcCccceEEEEEeecCC-------cCCCCeEEEEECCCccceeecCeEcCCCc
Q psy2133 9 NTIDLSTR-SFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDE-------KDPARGFYVYDLGSTHGTFLNRCKIKPKM 80 (207)
Q Consensus 9 ~~i~L~~~-~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~-------~~~~~~~~l~Dl~StnGTfVNg~rI~~~~ 80 (207)
..+.|... ..++|||.+.|||+|++++|||.||.|.+...... ..+.+.|+|.|+ |+|||||||++|.++.
T Consensus 18 ~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl-StNGT~VNg~ri~~~~ 96 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNRMIQGT 96 (158)
T ss_dssp CCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC-STTCCEETTEECCSSE
T ss_pred eEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC-CcCCeEECCEEcCCCc
Confidence 35677653 35899999999999999999999999999741110 000168999999 9999999999999999
Q ss_pred eEEecCCCEEEE-----cCeeeEEEEeCC
Q psy2133 81 YVRIHVGHMLSF-----GSSTRFFILQGP 104 (207)
Q Consensus 81 ~~~L~~Gd~I~f-----G~s~~~fil~~p 104 (207)
++.|++||+|+| |.+.+.|.+...
T Consensus 97 ~~~L~~GD~I~l~~d~~G~~~l~f~~~~~ 125 (158)
T 1dmz_A 97 KFLLQDGDEIKIIWDKNNKFVIGFKVEIN 125 (158)
T ss_dssp EEECCSSCCEESCCCTTTTCCCCEEEECS
T ss_pred eEEcCCCCEEEEeecCCCCEEEEEEEEeC
Confidence 999999999999 999888888653
No 17
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.84 E-value=5.7e-21 Score=145.97 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=77.1
Q ss_pred eeeEEEcCCCCeEEEccCCCCcEEeCCC-CcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEec
Q psy2133 7 IVNTIDLSTRSFYCVGRERNTHLNLLHP-TVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIH 85 (207)
Q Consensus 7 ii~~i~L~~~~~~~IGR~~~cDv~l~~p-sVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~ 85 (207)
....+.|.. ..++|||.+.|||+|+++ .|||.||.|.+.. .++.|+|.| +|+|||||||.+|.++.++.|+
T Consensus 15 ~~~~~~l~~-~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~------~~~~~~l~D-~S~NGt~vng~~l~~~~~~~L~ 86 (116)
T 1lgp_A 15 GEPHVLLRK-REWTIGRRRGCDLSFPSNKLVSGDHCRIVVDE------KSGQVTLED-TSTSGTVINKLKVVKKQTCPLQ 86 (116)
T ss_dssp SSCCEEECS-SEEEEESSTTSSEECTTCTTSCTTCEEEEECT------TTCCEEEEE-CSSSCCCCCCCCCCCSSCCCCC
T ss_pred CccEEEECC-CCEEECCCCCCCEEeCCCCCCChhHeEEEEEC------CCCeEEEEE-CCcCCcEECCEEcCCCCcEECC
Confidence 345677775 678999999999999874 9999999999962 157899999 9999999999999998889999
Q ss_pred CCCEEEEcCe------eeEEEEeCCC
Q psy2133 86 VGHMLSFGSS------TRFFILQGPS 105 (207)
Q Consensus 86 ~Gd~I~fG~s------~~~fil~~p~ 105 (207)
+||+|+||.. ...|++....
T Consensus 87 ~GD~i~~G~~~~~~~~~~~f~f~~~~ 112 (116)
T 1lgp_A 87 TGDVIYLVYRKNEPEHNVAYLYESLS 112 (116)
T ss_dssp TTCEEEEECCSSCGGGCEEEECCCSC
T ss_pred CCCEEEEeccCCCCCceEEEEEEccc
Confidence 9999999986 4567765543
No 18
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.84 E-value=2.8e-21 Score=153.75 Aligned_cols=85 Identities=26% Similarity=0.415 Sum_probs=76.4
Q ss_pred CCeeeeEEEcCCCCeEEEccCCCCcEEeCCCC----cCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCC
Q psy2133 4 SGQIVNTIDLSTRSFYCVGRERNTHLNLLHPT----VSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPK 79 (207)
Q Consensus 4 ~G~ii~~i~L~~~~~~~IGR~~~cDv~l~~ps----VSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~ 79 (207)
.|.....+.|..+..++|||.+.|||+|++|. |||.||.|.+. .++.|+|.||+|+|||||||++|.++
T Consensus 23 ~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~-------~~g~~~l~Dl~S~NGT~vNg~~i~~~ 95 (145)
T 2csw_A 23 VGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQN-------PEGQWTIMDNKSLNGVWLNRARLEPL 95 (145)
T ss_dssp TTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEEC-------TTSCEEEEBSSCSSCEEESSCBCCBT
T ss_pred eCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEc-------CCCeEEEEECCCCCCeEECCEECCCC
Confidence 45555678887767899999999999999998 99999999995 26789999999999999999999998
Q ss_pred ceEEecCCCEEEEcCe
Q psy2133 80 MYVRIHVGHMLSFGSS 95 (207)
Q Consensus 80 ~~~~L~~Gd~I~fG~s 95 (207)
.++.|++||+|+||..
T Consensus 96 ~~~~L~~GD~I~iG~~ 111 (145)
T 2csw_A 96 RVYSIHQGDYIQLGVP 111 (145)
T ss_dssp CCEECCSSCCEEESCC
T ss_pred ccEECCCCCEEEECCC
Confidence 8999999999999983
No 19
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.83 E-value=1.5e-20 Score=152.80 Aligned_cols=81 Identities=27% Similarity=0.405 Sum_probs=73.5
Q ss_pred eEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCC
Q psy2133 9 NTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGH 88 (207)
Q Consensus 9 ~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd 88 (207)
..+.|.. ..++|||.+.|||+|++++|||+||.|.+. ++.|+|.|++|+|||||||++|. .+.|++||
T Consensus 68 ~~~~L~~-~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--------~~~~~l~DlgS~NGT~VNg~~i~---~~~L~~GD 135 (162)
T 2kfu_A 68 SRFLLDQ-AITSAGRHPDSDIFLDDVTVSRRHAEFRLE--------NNEFNVVDVGSLNGTYVNREPVD---SAVLANGD 135 (162)
T ss_dssp CEEETTS-SEEEEESCSSSSEESTTTSSSSCSEEEEEE--------TTEEEEECCCCSSCEEETTBCCS---EEECCSSC
T ss_pred eEEEECC-CCEEECCCCCCCEEECCCCcChhhEEEEEE--------CCEEEEEECCCCCCeEECCEEcc---eEECCCCC
Confidence 3677775 678999999999999999999999999998 78999999999999999999997 47899999
Q ss_pred EEEEcCeeeEEEE
Q psy2133 89 MLSFGSSTRFFIL 101 (207)
Q Consensus 89 ~I~fG~s~~~fil 101 (207)
+|+||...+.|..
T Consensus 136 ~I~iG~~~l~f~~ 148 (162)
T 2kfu_A 136 EVQIGKFRLVFLT 148 (162)
T ss_dssp EEEETTEEEEEEC
T ss_pred EEEECCEEEEEEe
Confidence 9999998777654
No 20
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.82 E-value=3.3e-20 Score=148.17 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=74.2
Q ss_pred EEEcCCCCeEEEccCCCCcEEeCCCC---------cCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCc
Q psy2133 10 TIDLSTRSFYCVGRERNTHLNLLHPT---------VSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80 (207)
Q Consensus 10 ~i~L~~~~~~~IGR~~~cDv~l~~ps---------VSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~ 80 (207)
.+.|.. ..++|||.+.|||+|+++. |||.||.|.+..... +...|+|.|+ |+|||||||.+|.++.
T Consensus 42 ~i~L~~-~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~---~~~~~~i~D~-StNGT~VNg~~i~~~~ 116 (149)
T 1gxc_A 42 NLECVN-DNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPK---NSYIAYIEDH-SGNGTFVNTELVGKGK 116 (149)
T ss_dssp CEEECS-SEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTT---SSEEEEEEEC-CSSCEEETTEECCTTC
T ss_pred eEEECC-CCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCC---ceeEEEEEEC-CCCCeEECCEECCCCC
Confidence 467765 6789999999999999995 999999999983210 1238999997 9999999999999999
Q ss_pred eEEecCCCEEEEcCee-eEEEEeC
Q psy2133 81 YVRIHVGHMLSFGSST-RFFILQG 103 (207)
Q Consensus 81 ~~~L~~Gd~I~fG~s~-~~fil~~ 103 (207)
++.|++||+|+||... ..|++..
T Consensus 117 ~~~L~~GD~I~lG~~~~~~f~f~d 140 (149)
T 1gxc_A 117 RRPLNNNSEIALSLSRNKVFVFFD 140 (149)
T ss_dssp EEECCTTEEEEESSTTCEEEEEEE
T ss_pred eEECCCCCEEEECCCCCeEEEEEE
Confidence 9999999999999963 4566644
No 21
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.82 E-value=4e-20 Score=149.72 Aligned_cols=80 Identities=24% Similarity=0.353 Sum_probs=72.2
Q ss_pred eeEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCC
Q psy2133 8 VNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVG 87 (207)
Q Consensus 8 i~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~G 87 (207)
-.++.|.. ..++|||.+.|||+|++++|||.||+|.+. ++.|+|.|++|+||||||+++|. .+.|++|
T Consensus 77 g~~~~L~~-~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~--------~~~~~l~DlgStNGT~VNG~~i~---~~~L~~G 144 (157)
T 3oun_A 77 GRTYQLRE-GSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--------GQVALLADLNSTNGTTVNNAPVQ---EWQLADG 144 (157)
T ss_dssp CCEEECCS-EEEEEESSTTCSEECCCTTSCTTCEEEEEC--------SSCEEEEECSCSSCCEETTEECS---EEECCTT
T ss_pred CeEEEECC-CcEEEEeCCCCCEEeCCCCcChhHEEEEEE--------CCEEEEEECCCCCCeEECCEECc---eEECCCC
Confidence 34677776 568999999999999999999999999997 67899999999999999999997 4789999
Q ss_pred CEEEEcCeeeEE
Q psy2133 88 HMLSFGSSTRFF 99 (207)
Q Consensus 88 d~I~fG~s~~~f 99 (207)
|+|+||.+.+.|
T Consensus 145 D~I~lG~~~l~f 156 (157)
T 3oun_A 145 DVIRLGHSEIIV 156 (157)
T ss_dssp CEEEETTEEEEE
T ss_pred CEEEECCEEEEE
Confidence 999999988765
No 22
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.82 E-value=9.4e-21 Score=156.53 Aligned_cols=93 Identities=12% Similarity=0.188 Sum_probs=76.8
Q ss_pred EEEcCCC-CeEEEccCCCCcEEeCCCCcCccceEEEEEeecC-------CcCCCCeEEEEECCCccceeecCeEcCCCce
Q psy2133 10 TIDLSTR-SFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFD-------EKDPARGFYVYDLGSTHGTFLNRCKIKPKMY 81 (207)
Q Consensus 10 ~i~L~~~-~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~-------~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~ 81 (207)
.+.|... ..++|||.+.|||+|++++|||.||.|.+..... ...+.+.|+|.|+ |+|||||||++|.++.+
T Consensus 43 ~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl-StNGT~VNg~ri~~~~~ 121 (182)
T 1qu5_A 43 SLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNRMIQGTK 121 (182)
T ss_dssp CCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC-SSSCCEETTEECCSSEE
T ss_pred EEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEEC-CcCCeEECCEEcCCCcc
Confidence 4556653 3489999999999999999999999999983110 0001178999999 99999999999999999
Q ss_pred EEecCCCEEEE-----cCeeeEEEEeC
Q psy2133 82 VRIHVGHMLSF-----GSSTRFFILQG 103 (207)
Q Consensus 82 ~~L~~Gd~I~f-----G~s~~~fil~~ 103 (207)
+.|++||+|+| |.+.+.|.+..
T Consensus 122 ~~L~~GD~I~l~~d~~G~~~l~f~~~~ 148 (182)
T 1qu5_A 122 FLLQDGDEIKIIWDKNNKFVIGFKVEI 148 (182)
T ss_dssp EECCTTBCCEEEEEGGGTEEEECCEEE
T ss_pred eEcCCCCEEEEEEcCCCCEEEEEEEEe
Confidence 99999999999 99988887754
No 23
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.82 E-value=4.3e-20 Score=149.84 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=71.3
Q ss_pred CeEEEccCCCCcEEeCCC-CcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCCEEEEcCe
Q psy2133 17 SFYCVGRERNTHLNLLHP-TVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSS 95 (207)
Q Consensus 17 ~~~~IGR~~~cDv~l~~p-sVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd~I~fG~s 95 (207)
..++|||.+.|||+|++| .|||.||.|.+. .++.|+|.|+ |+|||||||.+|.++.++.|++||+|+||.+
T Consensus 64 ~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~-------~~g~~~l~Dl-S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 64 KVWTFGRNPACDYHLGNISRLSNKHFQILLG-------EDGNLLLNDI-STNGTWLNGQKVEKNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp EEEEEESSSSSSEECCCCTTTTSSCEEEEEC-------STTCEEEEEC-CSSCEEETTEEECTTEEEECCTTCEEEESCS
T ss_pred CcEEECCCCCCCEEeCCcCCcChhHEEEEEC-------CCCCEEEEEC-CCCCeEECCEEcCCCCceEcCCCCEEEECCC
Confidence 378999999999999998 599999999995 2678999999 9999999999999998999999999999996
Q ss_pred ----eeEEEEeCC
Q psy2133 96 ----TRFFILQGP 104 (207)
Q Consensus 96 ----~~~fil~~p 104 (207)
...|++..|
T Consensus 136 ~~~~~~~f~~~~~ 148 (164)
T 1g3g_A 136 VESDILSLVIFIN 148 (164)
T ss_dssp STTSCEEEEEEEC
T ss_pred CCCCcEEEEEEeC
Confidence 355666655
No 24
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.82 E-value=4.6e-20 Score=143.47 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=70.5
Q ss_pred CeEEEccCCCCcEEeCCC-CcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCCEEEEcCe
Q psy2133 17 SFYCVGRERNTHLNLLHP-TVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSS 95 (207)
Q Consensus 17 ~~~~IGR~~~cDv~l~~p-sVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd~I~fG~s 95 (207)
..++|||.+.|||+|+++ .|||.||.|.+. .++.|+|.|+ |+|||||||.+|.++.++.|++||+|+||.+
T Consensus 36 ~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~-------~~g~~~l~Dl-S~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~~ 107 (127)
T 1g6g_A 36 KVWTFGRNPACDYHLGNISRLSNKHFQILLG-------EDGNLLLNDI-STNGTWLNGQKVEKNSNQLLSQGDEITVGVG 107 (127)
T ss_dssp EEEEEESSTTSSEECCSCTTSCSSCEEEEEC-------TTSCEEEEEC-CSSCCEETTEECCTTCCEECCTTCEEEECTT
T ss_pred CCEEECCCCCCCEEeCCCCCCChhHeEEEEC-------CCCcEEEEEC-CcCCeEECCEEcCCCCeEEcCCCCEEEECCC
Confidence 378999999999999998 599999999995 2678999999 9999999999999988999999999999986
Q ss_pred e----eEEEEeCC
Q psy2133 96 T----RFFILQGP 104 (207)
Q Consensus 96 ~----~~fil~~p 104 (207)
. ..|++..|
T Consensus 108 ~~~~~i~f~~~~~ 120 (127)
T 1g6g_A 108 VESDILSLVIFIN 120 (127)
T ss_dssp SGGGCEEEEEEEC
T ss_pred ccCceEEEEEEeC
Confidence 4 34555544
No 25
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.80 E-value=2.8e-19 Score=161.33 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=75.8
Q ss_pred eEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCC
Q psy2133 9 NTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGH 88 (207)
Q Consensus 9 ~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd 88 (207)
.++.|.. ..++|||.++|||++++++|||.||.|.+. ++.|+|.|++|+|||||||++|. .++.|++||
T Consensus 299 ~~~~l~~-~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--------~~~~~l~Dl~S~nGt~vng~~i~--~~~~L~~gd 367 (388)
T 2ff4_A 299 RGYPLQA-AATRIGRLHDNDIVLDSANVSRHHAVIVDT--------GTNYVINDLRSSNGVHVQHERIR--SAVTLNDGD 367 (388)
T ss_dssp CEEECCS-SEEEEESSTTSSEECCCTTSCTTCEEEEEC--------SSCEEEEECSCSSCCEETTEECS--SEEEECTTC
T ss_pred cEEEECC-CCEEEecCCCCeEEECCCccChhHeEEEEE--------CCEEEEEECCCCCCeEECCEECC--CceECCCCC
Confidence 3677877 578999999999999999999999999997 68899999999999999999995 468999999
Q ss_pred EEEEcCeeeEEEEeCC
Q psy2133 89 MLSFGSSTRFFILQGP 104 (207)
Q Consensus 89 ~I~fG~s~~~fil~~p 104 (207)
+|+||.+.+.|....+
T Consensus 368 ~i~~G~~~~~~~~~~~ 383 (388)
T 2ff4_A 368 HIRICDHEFTFQISAG 383 (388)
T ss_dssp EEEETTEEEEEECSCC
T ss_pred EEEECCEEEEEEeCCC
Confidence 9999998887766443
No 26
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.79 E-value=3.3e-19 Score=137.39 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=72.5
Q ss_pred eEEEcCCCCeEEEcc--CCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecC
Q psy2133 9 NTIDLSTRSFYCVGR--ERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHV 86 (207)
Q Consensus 9 ~~i~L~~~~~~~IGR--~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~ 86 (207)
..+.|.. ..++||| .+.|||+|.++.|||+||.|.+. ++.|+|.|++|+|||||||++|.. ++.|++
T Consensus 29 ~~~~L~~-~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--------~~~~~l~dl~S~ngt~vNg~~i~~--~~~L~~ 97 (120)
T 1wln_A 29 KLYRLQL-SVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--------DGVVTVTPRSMDAETYVDGQRISE--TTMLQS 97 (120)
T ss_dssp CEEECCS-EEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--------SSCEEEEESCSSSCEEETSCBCSS--CEEECT
T ss_pred EEEEECC-CCEEECCCCCCCCcEEECCCCCchhheEEEEc--------CCEEEEEECCCCCCEEECCEEcCC--CEECCC
Confidence 4577776 5679996 47899999999999999999997 688999999999999999999973 578999
Q ss_pred CCEEEEcCeeeEEEEeCCCC
Q psy2133 87 GHMLSFGSSTRFFILQGPSE 106 (207)
Q Consensus 87 Gd~I~fG~s~~~fil~~p~~ 106 (207)
||+|+||... .|.+..|.+
T Consensus 98 GD~I~iG~~~-~~~f~~p~~ 116 (120)
T 1wln_A 98 GMRLQFGTSH-VFKFVDPSG 116 (120)
T ss_dssp TCEEEETTTE-EEEEECSSC
T ss_pred CCEEEECCce-EEEEECCcc
Confidence 9999999942 355555543
No 27
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.75 E-value=5.5e-18 Score=136.26 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=70.3
Q ss_pred EEcCCCCeEEEccCC---CCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCC
Q psy2133 11 IDLSTRSFYCVGRER---NTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVG 87 (207)
Q Consensus 11 i~L~~~~~~~IGR~~---~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~G 87 (207)
+.|.. ..++|||.+ .|||+|.+|+|||.||+|.+.... ...++++.|++|+|||||||.+|.. ++.|++|
T Consensus 56 y~L~~-g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~----~~~~~~~~d~~S~ngt~VNG~~i~~--~~~L~~G 128 (154)
T 4ejq_A 56 YYIKD-GITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRG----GSEAVVTLEPCEGADTYVNGKKVTE--PSILRSG 128 (154)
T ss_dssp EECCS-EEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTT----SSSCEEEEEECTTCCEEETTEECCS--CEECCTT
T ss_pred EEeCC-CCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCC----CceeEEEEecCCCCceEECCEEcCC--ceECCCC
Confidence 44555 568999986 699999999999999999998321 1246899999999999999999964 5789999
Q ss_pred CEEEEcCeeeEEEEeCC
Q psy2133 88 HMLSFGSSTRFFILQGP 104 (207)
Q Consensus 88 d~I~fG~s~~~fil~~p 104 (207)
|+|.||.+.+ |++..|
T Consensus 129 D~I~~G~~~~-Frf~~P 144 (154)
T 4ejq_A 129 NRIIMGKSHV-FRFNHP 144 (154)
T ss_dssp CEEEETTTEE-EEEECH
T ss_pred CEEEECCcEE-EEEcCh
Confidence 9999998753 666654
No 28
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.70 E-value=1.2e-16 Score=124.49 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=68.1
Q ss_pred EEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCCEE
Q psy2133 11 IDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHML 90 (207)
Q Consensus 11 i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd~I 90 (207)
+.|.. ..+|||.+.|||+|.++.|||.||+|.+. .++.|+|.|++ +|||||||++|.. ++.|+.||.|
T Consensus 44 y~L~~--~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~-------~~g~~~l~dl~-~ngt~VNG~~V~~--~~~L~~GD~I 111 (124)
T 3fm8_A 44 YYLKE--HTLIGSANSQDIQLCGMGILPEHCIIDIT-------SEGQVMLTPQK-NTRTFVNGSSVSS--PIQLHHGDRI 111 (124)
T ss_dssp EECCS--EEEEESSTTCSEECCSTTCCSSCEEEEEC-------TTSCEEEEECT-TCCEEETTEECCS--CEEECTTCEE
T ss_pred EECCC--CeEECCCCCCCEEECCCCeecceEEEEEC-------CCCeEEEEECC-CCCEEECCEEcCC--cEECCCCCEE
Confidence 45655 36999999999999999999999999985 26789999995 7999999999974 5789999999
Q ss_pred EEcCeeeEEEEeCC
Q psy2133 91 SFGSSTRFFILQGP 104 (207)
Q Consensus 91 ~fG~s~~~fil~~p 104 (207)
.||.+.. |.+..|
T Consensus 112 ~lG~~~~-FrFn~P 124 (124)
T 3fm8_A 112 LWGNNHF-FRLNLP 124 (124)
T ss_dssp EETTTEE-EEEECC
T ss_pred EECCCeE-EEEECc
Confidence 9997643 555543
No 29
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.67 E-value=9.8e-17 Score=142.22 Aligned_cols=96 Identities=19% Similarity=0.177 Sum_probs=75.0
Q ss_pred EEEcCCCCeEEEccCCCC---cEEeCCCCcCccceEEEEEeecCC---cCCCCeEEEEECCCccceeecCeEcCCCceEE
Q psy2133 10 TIDLSTRSFYCVGRERNT---HLNLLHPTVSRYHAILQYKSTFDE---KDPARGFYVYDLGSTHGTFLNRCKIKPKMYVR 83 (207)
Q Consensus 10 ~i~L~~~~~~~IGR~~~c---Dv~l~~psVSR~HAvI~~~~~~~~---~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~ 83 (207)
++.|.++. |+|||...+ +|.++||+|||.||+|++...... ......++|.||+|+|||||||++|++..+..
T Consensus 15 r~~L~pg~-YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~~~~~~L 93 (325)
T 3huf_A 15 SRILFPGT-YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVGQNGDSY 93 (325)
T ss_dssp CEEECSEE-EEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECCTTCEEE
T ss_pred EEEecCCe-EEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECCCceeee
Confidence 57777755 999998763 369999999999999999731100 00134799999999999999999998776544
Q ss_pred ecCCCEEEEcCeeeEEEEeCCCC
Q psy2133 84 IHVGHMLSFGSSTRFFILQGPSE 106 (207)
Q Consensus 84 L~~Gd~I~fG~s~~~fil~~p~~ 106 (207)
..+||.|+||.....|.+...+-
T Consensus 94 ~~dgd~I~fG~~~~~fRl~W~P~ 116 (325)
T 3huf_A 94 KEKDLKIQLGKCPFTINAYWRSM 116 (325)
T ss_dssp CSSEEEEEETTCSSCEEEEECCC
T ss_pred cCCCCEEEecCCcceEEEEEeee
Confidence 46899999999988888876543
No 30
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.63 E-value=1.1e-15 Score=114.71 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=67.7
Q ss_pred EEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccc-eeecCeEcCCCceEEecCCC
Q psy2133 10 TIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHG-TFLNRCKIKPKMYVRIHVGH 88 (207)
Q Consensus 10 ~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnG-TfVNg~rI~~~~~~~L~~Gd 88 (207)
++.|.....|.|||.|.|+++|++|+||+.||.|... ..+.|+.. |+|| +||||+++ .++.|..||
T Consensus 14 ~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~--------~~G~~~l~--S~nGtVFVNGqrv---~~~~I~~gD 80 (102)
T 3uv0_A 14 AILLKADTIYRIGRQKGLEISIADESMELAHATACIL--------RRGVVRLA--ALVGKIFVNDQEE---TVVDIGMEN 80 (102)
T ss_dssp CEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEE--------ETTEEEEE--ESSSCEEETTEEE---SEEEECGGG
T ss_pred cEEeecCcEEEEcCCCCCcEEECCcccccceEEEEec--------CCceEEEE--eccCcEEECCEEe---eeEEccCCc
Confidence 4556666789999999999999999999999999998 44556533 9999 59999999 367999999
Q ss_pred E------EEEcCeeeEEEEe
Q psy2133 89 M------LSFGSSTRFFILQ 102 (207)
Q Consensus 89 ~------I~fG~s~~~fil~ 102 (207)
. ++||...-.+.+.
T Consensus 81 tI~g~v~lrFGnvea~l~~~ 100 (102)
T 3uv0_A 81 AVAGKVKLRFGNVEARLEFG 100 (102)
T ss_dssp CBTTEEEEEETTEEEEEEEC
T ss_pred ccccEEEEEecCEEEEEEec
Confidence 9 8999998777664
No 31
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.49 E-value=1.9e-13 Score=106.35 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=73.1
Q ss_pred EEEcCCCCeEEEccCC-CCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCC
Q psy2133 10 TIDLSTRSFYCVGRER-NTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGH 88 (207)
Q Consensus 10 ~i~L~~~~~~~IGR~~-~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd 88 (207)
.+.|.. ..++||+.+ .|||+|.+|.||++||.|+.. ..+|+|. +|+||||+||.++..+. .|.+|.
T Consensus 18 ~l~L~~-~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~--------~~g~~L~--~s~ngt~vdG~~v~~~~--~L~~g~ 84 (123)
T 4a0e_A 18 EVELPH-GRCVFGSDPLQSDIVLSDSEIAPVHLVLMVD--------EEGIRLT--DSAEPLLQEGLPVPLGT--LLRAGS 84 (123)
T ss_dssp EEEECS-EEEEEESCTTTCSEECCCTTSCSSCEEEEEE--------TTEEEEE--EESSCCEETTEECCTTC--BCCTTS
T ss_pred EEEcCC-CcEEECCCCCCCCEEEeCCCccceeEEEEEC--------CCeEEEE--eccCCEEECCEEccccc--ccCCCC
Confidence 567776 678999999 999999999999999999999 7899997 79999999999998875 699999
Q ss_pred EEEEcCeeeEEEEeCC
Q psy2133 89 MLSFGSSTRFFILQGP 104 (207)
Q Consensus 89 ~I~fG~s~~~fil~~p 104 (207)
.|.+|.+.+.|.-...
T Consensus 85 ~l~lG~~~l~~~~~~~ 100 (123)
T 4a0e_A 85 CLEVGFLLWTFVAVGQ 100 (123)
T ss_dssp CEEETTEEEEEEETTS
T ss_pred EEEEccEEEEEEcCCC
Confidence 9999999887766543
No 32
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.40 E-value=4.2e-13 Score=120.69 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=69.5
Q ss_pred EEEcCCCCeEEEccCCCCcEEeCCCCc---------CccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCc
Q psy2133 10 TIDLSTRSFYCVGRERNTHLNLLHPTV---------SRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80 (207)
Q Consensus 10 ~i~L~~~~~~~IGR~~~cDv~l~~psV---------SR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~ 80 (207)
.+.|.. ..++|||.+.||+++++|.| ||+||.|....... +...|+|.| .|+||||||+.++.++.
T Consensus 22 ~~~l~~-~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~---~~~~~~i~D-~S~nGt~vn~~~~~~~~ 96 (419)
T 3i6u_A 22 NLECVN-DNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPK---NSYIAYIED-HSGNGTFVNTELVGKGK 96 (419)
T ss_dssp CEEECS-SEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETT---TEECCEEEE-CCSSCEEETTEECCTTC
T ss_pred ceEecC-CCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCC---CceEEEEEE-CCcCCceECcccccCCC
Confidence 567766 67899999999999999987 99999998753211 123499999 79999999999999998
Q ss_pred eEEecCCCEEEEcCee
Q psy2133 81 YVRIHVGHMLSFGSST 96 (207)
Q Consensus 81 ~~~L~~Gd~I~fG~s~ 96 (207)
..+|..|+.|.||.+.
T Consensus 97 ~~~l~~~d~i~~~~~~ 112 (419)
T 3i6u_A 97 RRPLNNNSEIALSLSR 112 (419)
T ss_dssp EEECCTTEEEEESSTT
T ss_pred cccCCCCCEeeeeccc
Confidence 8999999999999764
No 33
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.38 E-value=3.3e-12 Score=96.43 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=73.7
Q ss_pred eEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCC
Q psy2133 9 NTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGH 88 (207)
Q Consensus 9 ~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd 88 (207)
..|.|..+..++|||+|.|.| .+..+||.|+.|.... ..+.+.|.++ ++|+|+|||.++.++..+.|++||
T Consensus 15 ~~I~L~~g~~v~iGR~p~t~I--~DkrcSR~h~~L~~~~------~~g~v~vk~l-g~Np~~vng~~l~k~~~~~L~~GD 85 (102)
T 3kt9_A 15 QRIRLPHLEAVVIGRGPETKI--TDKKCSRQQVQLKAEC------NKGYVKVKQV-GVNPTSIDSVVIGKDQEVKLQPGQ 85 (102)
T ss_dssp CEEECCBTCEEEECSSTTTCC--CCTTSCSSCEEEEEET------TTTEEEEEEC-SSSCCEETTEECCBTCEEEECTTC
T ss_pred CcEEcCCCCcEEeccCCcccc--ccCcccCcceEEEEec------CCCEEEEEEC-cCCCCeECCEEcCCCCeEEeCCCC
Confidence 468898888888999999977 5899999999999983 1456799999 599999999999999999999999
Q ss_pred EEEEcCeeeEEEEe
Q psy2133 89 MLSFGSSTRFFILQ 102 (207)
Q Consensus 89 ~I~fG~s~~~fil~ 102 (207)
.|.+-.....|.+.
T Consensus 86 ~l~Ll~~~~~~~v~ 99 (102)
T 3kt9_A 86 VLHMVNELYPYIVE 99 (102)
T ss_dssp CEEEETTEEEEEEE
T ss_pred EEEEccCCceEEEE
Confidence 99998877766654
No 34
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.22 E-value=6.5e-11 Score=97.67 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=67.3
Q ss_pred EEcCCCCeEEEccCC---CCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCC
Q psy2133 11 IDLSTRSFYCVGRER---NTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVG 87 (207)
Q Consensus 11 i~L~~~~~~~IGR~~---~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~G 87 (207)
+.|.. ...+|||.. .|||+|..|.|++.||+|....... ..+.++|..+ +.+.|||||.+|.. ++.|++|
T Consensus 86 y~L~~-g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~---~~~~vtl~p~-~~a~t~VNG~~I~~--~~~L~~G 158 (184)
T 4egx_A 86 YYIKD-GITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGG---SEAVVTLEPC-EGADTYVNGKKVTE--PSILRSG 158 (184)
T ss_dssp EECCS-EEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSS---CSCEEEEEEC-TTCCEEETTEECCS--CEECCTT
T ss_pred EEECC-CcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCC---ceEEEEEeeC-CCCeEEEcCEEccc--cEEcCCC
Confidence 45655 467999975 5999999999999999999873211 1345777776 67889999999974 5799999
Q ss_pred CEEEEcCeeeEEEEeCC
Q psy2133 88 HMLSFGSSTRFFILQGP 104 (207)
Q Consensus 88 d~I~fG~s~~~fil~~p 104 (207)
|.|.||.+.+ |.+..|
T Consensus 159 DrI~lG~~h~-Frfn~P 174 (184)
T 4egx_A 159 NRIIMGKSHV-FRFNHP 174 (184)
T ss_dssp CEEEETTTEE-EEEECH
T ss_pred CEEEECCCCE-EEECCh
Confidence 9999998754 777655
No 35
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.11 E-value=3.2e-10 Score=86.54 Aligned_cols=84 Identities=20% Similarity=0.181 Sum_probs=68.1
Q ss_pred eEEEcC-CCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCC
Q psy2133 9 NTIDLS-TRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVG 87 (207)
Q Consensus 9 ~~i~L~-~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~G 87 (207)
..|.|. .....+|||.|.+. +.+..+||.|+.|.++. .++.+.|.++ ++|+|++||.+|.++..+.|++|
T Consensus 20 ~~I~Lp~~~g~~viGR~p~t~--I~DkrcSR~hv~L~ad~------~~~~v~vk~l-G~Np~~vng~~l~k~~~~~L~~G 90 (110)
T 2brf_A 20 PPIFLPSDGQALVLGRGPLTQ--VTDRKCSRTQVELVADP------ETRTVAVKQL-GVNPSTTGTQELKPGLEGSLGVG 90 (110)
T ss_dssp CCEECCSTTCCEEECSBTTTT--BCCTTSCSSCEEEEEET------TTTEEEEEEC-SSSCCEEC-CBCCTTCEEEEETT
T ss_pred CcEEeccCCCCEEEcCCCCcc--cccccceeeeEEEEEec------CCCEEEEEEc-ccCCcEECCEEcCCCCEEEecCC
Confidence 378885 33678999999665 56899999999999983 2577889999 78999999999999999999999
Q ss_pred CEEEE--cCeeeEEEE
Q psy2133 88 HMLSF--GSSTRFFIL 101 (207)
Q Consensus 88 d~I~f--G~s~~~fil 101 (207)
|.|.| |...+.+++
T Consensus 91 D~leLl~g~y~~~v~f 106 (110)
T 2brf_A 91 DTLYLVNGLHPLTLRW 106 (110)
T ss_dssp CEEEEETTEEEEEEEE
T ss_pred CEEEEccCCeEEEEEe
Confidence 99998 554554444
No 36
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=99.08 E-value=2.9e-10 Score=97.00 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=60.0
Q ss_pred cCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCC--CeEEEEECCCccce-eecCeEcCCCceEEec-CCC
Q psy2133 13 LSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPA--RGFYVYDLGSTHGT-FLNRCKIKPKMYVRIH-VGH 88 (207)
Q Consensus 13 L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~--~~~~l~Dl~StnGT-fVNg~rI~~~~~~~L~-~Gd 88 (207)
+..+ .++|||.+.|||+++++ + ||.+.... .. +.|+|.|++|+||| ||||++|... ..|+ +||
T Consensus 89 ~~~~-~itIG~~~~~dI~l~~~-~---~~~~~~~~------~~~~~~~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD 155 (238)
T 1wv3_A 89 SIQD-TMTIGPNAYDDMVIQSL-M---NAIIIKDF------QSIQESQYVRIVHDKNTDVYINYELQEQL--TNKAYIGD 155 (238)
T ss_dssp SSCS-EEEEESSTTSSEECTTC-S---SCEEEECG------GGHHHHCEEEEECCTTCCEEETTEECCSS--EEEEETTC
T ss_pred cCCc-eEEEeCCCCCeEEeCCC-e---eEEEEecc------cCcCCcEEEEEccCCCCCEEECCEEeccc--eeccCCcC
Confidence 4444 88999999999999998 3 57555541 01 48999999999996 9999999766 4799 999
Q ss_pred EEEEcCeeeEE
Q psy2133 89 MLSFGSSTRFF 99 (207)
Q Consensus 89 ~I~fG~s~~~f 99 (207)
.|.||+..+.|
T Consensus 156 ~I~ig~~~~~~ 166 (238)
T 1wv3_A 156 HIYVEGIWLEV 166 (238)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEE
Confidence 99999987654
No 37
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.98 E-value=3.9e-10 Score=87.20 Aligned_cols=87 Identities=22% Similarity=0.252 Sum_probs=71.0
Q ss_pred EEEcC-CCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCC
Q psy2133 10 TIDLS-TRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGH 88 (207)
Q Consensus 10 ~i~L~-~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd 88 (207)
.|.|. ....++|||.|.+. +.+..+||.|+.|.++. ..+.+.|.++ ++|+|+||+.+|.++..+.|++||
T Consensus 28 ~I~Lp~~~g~~viGRgp~t~--I~DkrcSR~qv~L~ad~------~~~~v~vk~l-G~NP~~vng~~l~k~~~~~L~~GD 98 (119)
T 1ujx_A 28 PIFLPSDGQALVLGRGPLTQ--VTDRKCSRNQVELIADP------ESRTVAVKQL-GVNPSTVGVQELKPGLSGSLSLGD 98 (119)
T ss_dssp CCCCCTTSCCEEESBBTTTT--BCCTTSCTTSEEEEEET------TTTEEEEEEC-SSSCCBSSSSBCCTTCEEEEETTC
T ss_pred cEEeccCCCCEEEcCCCCcc--cccccccceeEEEEEec------CCCEEEEEEc-ccCCcEECCEEecCCCEEEecCCC
Confidence 56775 33678999999665 56899999999999983 2577889999 679999999999999999999999
Q ss_pred EEEE--cCeeeEEEEeCCC
Q psy2133 89 MLSF--GSSTRFFILQGPS 105 (207)
Q Consensus 89 ~I~f--G~s~~~fil~~p~ 105 (207)
.|.| |...+.+++..|.
T Consensus 99 ~l~Ll~g~y~~~v~f~~~~ 117 (119)
T 1ujx_A 99 VLYLVNGLYPLTLRWSGPS 117 (119)
T ss_dssp CCBCBTTBSCCEEEECCCC
T ss_pred EEEEecCCeEEEEEeccCC
Confidence 9874 6666666665543
No 38
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.95 E-value=2.2e-09 Score=85.14 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=69.4
Q ss_pred eEEEcC-CCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCC
Q psy2133 9 NTIDLS-TRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVG 87 (207)
Q Consensus 9 ~~i~L~-~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~G 87 (207)
..|.|. ....++|||.+.+. +.+..+||.|+.|.++. ..+.+.|.++ ++|+|+|||.+|.++..+.|++|
T Consensus 20 ~~I~Lp~~~g~vvIGRgPet~--ItDkRcSR~qv~L~ad~------~~g~V~Vk~l-G~NP~~vng~~L~k~~~~~L~~G 90 (143)
T 1yj5_C 20 PPIFLPSDGQALVLGRGPLTQ--VTDRKCSRNQVELIADP------ESRTVAVKQL-GVNPSTVGVHELKPGLSGSLSLG 90 (143)
T ss_dssp CCEECCTTTCEEEECSBTTTT--BCCSSSCSSCEEEEEET------TTTEEEEEEC-SSSCCEETTEECCTTCEEEECTT
T ss_pred CcEEeccCCCCEEEcCCCccc--cccccccceeEEEEEec------CCCeEEEEEc-ccCCcEECCEEecCCCEEEecCC
Confidence 378885 33678999999665 56899999999999983 2467779999 67999999999999999999999
Q ss_pred CEEEE--cCeeeEEEE
Q psy2133 88 HMLSF--GSSTRFFIL 101 (207)
Q Consensus 88 d~I~f--G~s~~~fil 101 (207)
|.|.| |...+.|++
T Consensus 91 D~LeLl~g~y~f~V~f 106 (143)
T 1yj5_C 91 DVLYLVNGLYPLTLRW 106 (143)
T ss_dssp CEEESSSSCSEEEEEE
T ss_pred CEEEEecCCceEEEEe
Confidence 99985 655655555
No 39
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=88.17 E-value=0.91 Score=37.99 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=36.0
Q ss_pred CeeeeEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEE
Q psy2133 5 GQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYV 60 (207)
Q Consensus 5 G~ii~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l 60 (207)
+.-+..+.|.....++||+...|+|.+.++ ..|+.|.+. +++.|.+
T Consensus 9 ~~~~~~~~L~~~~~~tiG~~~~~~itl~~~---~~~i~l~~~-------~~~~~~v 54 (238)
T 1wv3_A 9 NKQLKMLNLRDGKTYTISEDERADITLKSL---GEVIHLEQN-------NQGTWQA 54 (238)
T ss_dssp TTEEEEEECCTTCCEEEESCTTSSEECTTC---CCCEEEEEC-------TTSCEEE
T ss_pred CCEEEEEecCCCcEEEECCCccceEEecCC---CccEEEEEc-------cCCeEEE
Confidence 455677888766789999999999999877 778888886 1256666
No 40
>2co3_A SAFA pilus subunit; adhesion, pathogenesis, fibril protein, fold complementation; 1.78A {Salmonella typhimurium} SCOP: b.2.3.2 PDB: 3cre_B 3crf_B 2co7_A 3cre_A 3crf_A 2cnz_A 2cny_A 2co1_A 2co2_A 2co4_A 2co6_A
Probab=51.36 E-value=6.7 Score=30.31 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=35.8
Q ss_pred cEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecC--eEcCCCce
Q psy2133 28 HLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNR--CKIKPKMY 81 (207)
Q Consensus 28 Dv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg--~rI~~~~~ 81 (207)
-|.+..+++++.|+...+. +-.|+++|.+++-...+-| +-|+|.+|
T Consensus 79 ~V~fs~~~~~~~~~~~~~n--------g~~W~tfdtnd~l~i~l~G~~QnV~pDTY 126 (137)
T 2co3_A 79 GVGLSSDSLRRSDSTEKWN--------GVNWMTFNSNDTLDIVLTGPAQNVTADTY 126 (137)
T ss_dssp EEEECHHHHTTCCEEEEET--------TEEEEEEESSEEEEEEECSSCCEECSEEE
T ss_pred EEEEecccccCCCCccccC--------CceEEEEecCCcEEEEEecccccCCCCce
Confidence 3556678899999988776 7789999998887777766 66777653
No 41
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=48.53 E-value=34 Score=29.90 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=33.3
Q ss_pred CCccceeecCeEcCCCceEEecCCCEEEEcCe---eeEEEEeCC
Q psy2133 64 GSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSS---TRFFILQGP 104 (207)
Q Consensus 64 ~StnGTfVNg~rI~~~~~~~L~~Gd~I~fG~s---~~~fil~~p 104 (207)
|..-...|||+.++....+.|+.|++++||.. .|.|.....
T Consensus 78 GA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~~G~R~YLAV~G 121 (318)
T 3mml_A 78 GADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAVRG 121 (318)
T ss_dssp ESCCCCEETTEECCTTSCEEECTTCEEECCCCSSCSEEEEEETT
T ss_pred CCCCcceECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEEEcc
Confidence 44556779999999999999999999999975 477876544
No 42
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=42.40 E-value=16 Score=24.68 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=22.7
Q ss_pred ccceeecCeEc-CCCceEEecCCCEEEEcCeee
Q psy2133 66 THGTFLNRCKI-KPKMYVRIHVGHMLSFGSSTR 97 (207)
Q Consensus 66 tnGTfVNg~rI-~~~~~~~L~~Gd~I~fG~s~~ 97 (207)
....+|||+.+ .++ ..|..||.|.+++...
T Consensus 45 ~G~V~VNG~~v~~~~--~~v~~gd~I~v~~~~~ 75 (79)
T 1p9k_A 45 EGQVKVDGAVETRKR--CKIVAGQTVSFAGHSV 75 (79)
T ss_dssp HHHHEETTBCCCCSS--CCCCSSEEEEETTEEE
T ss_pred CCEEEECCEEecCCC--CCCCCCCEEEECCEEE
Confidence 35688999887 444 3688999999988654
No 43
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=41.78 E-value=25 Score=23.21 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=18.8
Q ss_pred ceeecCeEcCCCceEEecCCCEEEE
Q psy2133 68 GTFLNRCKIKPKMYVRIHVGHMLSF 92 (207)
Q Consensus 68 GTfVNg~rI~~~~~~~L~~Gd~I~f 92 (207)
-..||++.++.. ..|++||.|.|
T Consensus 48 ~v~vNg~~v~~~--~~L~~gD~V~i 70 (77)
T 2q5w_D 48 QVAVNEEFVQKS--DFIQPNDTVAL 70 (77)
T ss_dssp EEEETTEEECTT--SEECTTCEEEE
T ss_pred EEEECCEECCCC--CCcCCCCEEEE
Confidence 477888888765 58999999877
No 44
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=41.72 E-value=21 Score=24.63 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=20.3
Q ss_pred cceeecCeEcCCCceEEecCCCEEEEcC
Q psy2133 67 HGTFLNRCKIKPKMYVRIHVGHMLSFGS 94 (207)
Q Consensus 67 nGTfVNg~rI~~~~~~~L~~Gd~I~fG~ 94 (207)
....|||+.+.++ ..|+.||.|.+-.
T Consensus 26 G~V~VNg~~~~~~--~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 26 GAVWLNGSCAKAS--KEVKAGDTISLHY 51 (92)
T ss_dssp TCCEETTEECCTT--CBCCTTCEEEECC
T ss_pred CcEEECCEEcCCC--CCcCCCCEEEEEe
Confidence 4588999987654 4799999998853
No 45
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=40.06 E-value=27 Score=26.27 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=23.3
Q ss_pred cceeecCeEcCCCceEEecCCCEEEE--cCeeeEEEE
Q psy2133 67 HGTFLNRCKIKPKMYVRIHVGHMLSF--GSSTRFFIL 101 (207)
Q Consensus 67 nGTfVNg~rI~~~~~~~L~~Gd~I~f--G~s~~~fil 101 (207)
..+.|||..+.+. ..|+.||+|.| +...+.+.+
T Consensus 34 G~V~VNG~~vk~s--~~V~~GD~I~I~~~~~~~~~~v 68 (133)
T 1dm9_A 34 GKVHYNGQRSKPS--KIVELNATLTLRQGNDERTVIV 68 (133)
T ss_dssp TCEEETTEECCTT--CBCCTTCEEEEEETTEEEEEEE
T ss_pred CcEEECCEEcCCC--CEeCCCCEEEEEeCCceeeEEE
Confidence 4488999988665 47999999876 444554444
No 46
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=39.13 E-value=15 Score=25.30 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=21.1
Q ss_pred cceeecCeEcCCCce--EEecCCCEEEE
Q psy2133 67 HGTFLNRCKIKPKMY--VRIHVGHMLSF 92 (207)
Q Consensus 67 nGTfVNg~rI~~~~~--~~L~~Gd~I~f 92 (207)
--+.|||.-|++..+ +.|+.||.|.|
T Consensus 35 vAVavNg~iVpr~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 35 VTVELNGEVLEREAFDATTVKDGDAVEF 62 (78)
T ss_dssp CCEEETTEECCTTHHHHCEECSSBCEEE
T ss_pred EEEEECCEECChHHcCcccCCCCCEEEE
Confidence 347789999888754 68999999987
No 47
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=37.06 E-value=17 Score=23.60 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=17.5
Q ss_pred eeecCeEcCCCc--eEEecCCCEEEE
Q psy2133 69 TFLNRCKIKPKM--YVRIHVGHMLSF 92 (207)
Q Consensus 69 TfVNg~rI~~~~--~~~L~~Gd~I~f 92 (207)
+.||+..+++.. ...|++||.|.|
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred EEECCEECCccccCCcCCCCCCEEEE
Confidence 567887776542 257999999876
No 48
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=35.36 E-value=24 Score=24.30 Aligned_cols=24 Identities=8% Similarity=0.265 Sum_probs=19.4
Q ss_pred cceeecCeEcCCCceEEecCCCEEEE
Q psy2133 67 HGTFLNRCKIKPKMYVRIHVGHMLSF 92 (207)
Q Consensus 67 nGTfVNg~rI~~~~~~~L~~Gd~I~f 92 (207)
-|-.|||+.++-. ++|+.||+|.|
T Consensus 42 v~AkVNG~~v~L~--~~L~~gd~VeI 65 (78)
T 3hvz_A 42 IGAKVDGRIVPID--YKVKTGEIIDV 65 (78)
T ss_dssp EEEEETTEEECTT--CBCCTTCBEEE
T ss_pred EEEEECCEEcCCC--cccCCCCEEEE
Confidence 4567899988876 47999999876
No 49
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=34.73 E-value=31 Score=22.85 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=18.4
Q ss_pred ceeecCeEcCCCceEEecCCCEEEE
Q psy2133 68 GTFLNRCKIKPKMYVRIHVGHMLSF 92 (207)
Q Consensus 68 GTfVNg~rI~~~~~~~L~~Gd~I~f 92 (207)
-..||++.++.. ..|++||.|.|
T Consensus 52 ~v~vN~~~v~~~--~~l~~gD~V~i 74 (81)
T 1fm0_D 52 LAAVNQTLVSFD--HPLTDGDEVAF 74 (81)
T ss_dssp EEEETTEECCTT--CBCCTTCEEEE
T ss_pred EEEECCEECCCC--CCCCCCCEEEE
Confidence 378899888754 47999999887
No 50
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=34.41 E-value=39 Score=22.97 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=20.0
Q ss_pred ccceeecCeEcCCCceEEecCCCEEEE
Q psy2133 66 THGTFLNRCKIKPKMYVRIHVGHMLSF 92 (207)
Q Consensus 66 tnGTfVNg~rI~~~~~~~L~~Gd~I~f 92 (207)
..-..||++.+... ..|++||.|.|
T Consensus 58 ~~~v~VN~~~v~~~--~~l~~gDeV~i 82 (89)
T 3po0_A 58 HINVLRNGEAAALG--EATAAGDELAL 82 (89)
T ss_dssp TSEEEETTEECCTT--SBCCTTCEEEE
T ss_pred cEEEEECCEECCCC--cccCCCCEEEE
Confidence 34678899988765 47999999877
No 51
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=33.82 E-value=15 Score=27.00 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=19.7
Q ss_pred eeecCeEcC--CCceEEecCCCEEEE
Q psy2133 69 TFLNRCKIK--PKMYVRIHVGHMLSF 92 (207)
Q Consensus 69 TfVNg~rI~--~~~~~~L~~Gd~I~f 92 (207)
++|||+.+. .+..++|++||.|.|
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 788998764 455678999999998
No 52
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=33.26 E-value=12 Score=25.37 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=19.1
Q ss_pred ceeecCeEcCCCce--EEecCCCEEEE
Q psy2133 68 GTFLNRCKIKPKMY--VRIHVGHMLSF 92 (207)
Q Consensus 68 GTfVNg~rI~~~~~--~~L~~Gd~I~f 92 (207)
-+.|||.-|++..+ +.|+.||.|.|
T Consensus 32 AV~vNg~iVpr~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEI 58 (73)
T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEE
T ss_pred EEEECCEECChHHcCcccCCCCCEEEE
Confidence 46778887776542 58999999987
No 53
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=33.06 E-value=35 Score=22.47 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=17.9
Q ss_pred eeecCeEcCCCceEEecCCCEEEE
Q psy2133 69 TFLNRCKIKPKMYVRIHVGHMLSF 92 (207)
Q Consensus 69 TfVNg~rI~~~~~~~L~~Gd~I~f 92 (207)
+.+|+.-+++.. .|+.||.|.|
T Consensus 42 vavN~~~v~~~~--~L~~gD~V~i 63 (70)
T 1ryj_A 42 VKKNGQIVIDEE--EIFDGDIIEV 63 (70)
T ss_dssp EEETTEECCTTS--BCCTTCEEEE
T ss_pred EEECCEECCCcc--cCCCCCEEEE
Confidence 667888887765 7999999876
No 54
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=31.84 E-value=23 Score=25.00 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=18.5
Q ss_pred eeecCeEcCCCc--eEEecCCCEEEE
Q psy2133 69 TFLNRCKIKPKM--YVRIHVGHMLSF 92 (207)
Q Consensus 69 TfVNg~rI~~~~--~~~L~~Gd~I~f 92 (207)
+.||+..|++.. ...|+.||.|.|
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEE
Confidence 678888887643 257999999876
No 55
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=31.77 E-value=16 Score=25.93 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=19.9
Q ss_pred CccceeecCeEcCC--CceEEecCCCEEEE
Q psy2133 65 STHGTFLNRCKIKP--KMYVRIHVGHMLSF 92 (207)
Q Consensus 65 StnGTfVNg~rI~~--~~~~~L~~Gd~I~f 92 (207)
|.+-..||++.++. .....|++||.|.|
T Consensus 63 ~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 63 GSINILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp SSCEEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred cccEEEECCEEccccCCCCCCCCCCCEEEE
Confidence 33468899987742 23357999999887
No 56
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=30.53 E-value=25 Score=25.38 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=21.4
Q ss_pred ccceeecCeEcCCCceEEecCCCEEEEcC
Q psy2133 66 THGTFLNRCKIKPKMYVRIHVGHMLSFGS 94 (207)
Q Consensus 66 tnGTfVNg~rI~~~~~~~L~~Gd~I~fG~ 94 (207)
.+-+.|||+.++.. ..|+.||.|.+=.
T Consensus 58 ~~~V~Vng~~v~~d--~~L~dGDRVEIyr 84 (97)
T 2hj1_A 58 TNKIGIFSRPIKLT--DVLKEGDRIEIYR 84 (97)
T ss_dssp TSEEEEEECSCCTT--CBCCTTCEEEECC
T ss_pred ccEEEEcCEECCCC--ccCCCCCEEEEEe
Confidence 45688999988865 4799999998754
No 57
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin, allophanate hydrolase, structural G unknown function, NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Probab=30.10 E-value=65 Score=29.79 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=33.3
Q ss_pred CCccceeecCeEcCCCceEEecCCCEEEEcCe---eeEEEEeCC
Q psy2133 64 GSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSS---TRFFILQGP 104 (207)
Q Consensus 64 ~StnGTfVNg~rI~~~~~~~L~~Gd~I~fG~s---~~~fil~~p 104 (207)
|..-...|||+.++....+.++.|++++||.. .|.|.....
T Consensus 295 GA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~~G~R~YLAv~G 338 (494)
T 3oep_A 295 GYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAVAG 338 (494)
T ss_dssp ESSEEEEETTEEECSSEEEEECTTCEEEEEECSSCCEEEEEETT
T ss_pred CCCCcceECCEEccCCeEEEECCCCEEEeCCCCCCcEEEEEecC
Confidence 44556779999999999999999999999964 477876543
No 58
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=29.87 E-value=32 Score=24.10 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=18.7
Q ss_pred ceeecCeEcCCCceEEecCCCEEEE
Q psy2133 68 GTFLNRCKIKPKMYVRIHVGHMLSF 92 (207)
Q Consensus 68 GTfVNg~rI~~~~~~~L~~Gd~I~f 92 (207)
-..||++.++.. ..|++||.|.|
T Consensus 69 ~v~VNg~~v~~~--~~L~dGDeV~i 91 (98)
T 1vjk_A 69 NIAVNGRYVSWD--EELKDGDVVGV 91 (98)
T ss_dssp EEEETTBCCCTT--CBCCTTCEEEE
T ss_pred EEEECCEECCCC--CCCCCCCEEEE
Confidence 478899888754 57999999987
No 59
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=29.45 E-value=33 Score=23.63 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=18.9
Q ss_pred cceeecCeEcCC--CceEEecCCCEEEE
Q psy2133 67 HGTFLNRCKIKP--KMYVRIHVGHMLSF 92 (207)
Q Consensus 67 nGTfVNg~rI~~--~~~~~L~~Gd~I~f 92 (207)
--.+||++.+.. +....|++||.|.|
T Consensus 59 ~~v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 59 VNIYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEEECCEEccCcCCCCcCCCCCCEEEE
Confidence 346789988763 23457999999876
No 60
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin ligase, substrate binding phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3egb_A
Probab=28.86 E-value=2.3e+02 Score=24.05 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=23.4
Q ss_pred eEEEccCCC--CcEEeC---------------CCCcCccceEEEEEee
Q psy2133 18 FYCVGRERN--THLNLL---------------HPTVSRYHAILQYKST 48 (207)
Q Consensus 18 ~~~IGR~~~--cDv~l~---------------~psVSR~HAvI~~~~~ 48 (207)
-+=|||... .|+++- ..+|||+-|+|.+++.
T Consensus 89 MFQIGRste~pIDFvV~dt~~g~~~~~~~~~~~StISRfACRI~~dR~ 136 (263)
T 3ega_A 89 MFQVGRSTESPIDFVVTDTISGSQNTDEAQITQSTISRFACRIVCDRN 136 (263)
T ss_dssp EEEEESCCSTTCSEECCCC----------CCCCCCSCSSCEEEEEESS
T ss_pred hhhhcCCCCCCCCeEEeccccccccCCcCCcccchhhheeEEEEeccC
Confidence 456999875 677754 3469999999998754
No 61
>1m0f_B GPB, scaffolding protein B; bacteriophage, cryo electron microscopy, procapsid, morphogenesis, microviridae, assembly; 16.00A {Enterobacteria phage ALPHA3} SCOP: i.6.1.1
Probab=28.30 E-value=12 Score=25.38 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=19.8
Q ss_pred cCeEcCCCceEEecCCCEEEEcC
Q psy2133 72 NRCKIKPKMYVRIHVGHMLSFGS 94 (207)
Q Consensus 72 Ng~rI~~~~~~~L~~Gd~I~fG~ 94 (207)
|+.+|.|...++.++|+++++|-
T Consensus 45 nd~rvQ~aEFYRFnD~~~~k~GY 67 (68)
T 1m0f_B 45 NDWRIQPAEFYRFHDAEVNTFGY 67 (68)
T ss_pred CcceechhHheeecchhhhhccc
Confidence 56788888899999999999884
No 62
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=28.15 E-value=12 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=23.4
Q ss_pred CcccccccCchhhhhhhhhccCCCccce
Q psy2133 175 NNEELYLDDPKKTLRGWFDREGKGFPLF 202 (207)
Q Consensus 175 ~~e~~~~~dp~k~l~~~f~~eg~~~~~~ 202 (207)
.++.+..+|||..|+-|.-+.+..++|.
T Consensus 19 ~~~~~~~~d~Kt~LqE~~Qk~~~~p~Y~ 46 (113)
T 1uil_A 19 LHGNWTLENAKARLNQYFQKEKIQGEYK 46 (113)
T ss_dssp HHCCCCHHHHHHHHHHHHHHSCCCCCCE
T ss_pred cccccccCCHHHHHHHHHHHCCCCCeEE
Confidence 3455668999999999999999977775
No 63
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=26.66 E-value=19 Score=26.63 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=19.0
Q ss_pred eeecCeEcC--CCceEEecCCCEEEE
Q psy2133 69 TFLNRCKIK--PKMYVRIHVGHMLSF 92 (207)
Q Consensus 69 TfVNg~rI~--~~~~~~L~~Gd~I~f 92 (207)
++||+..|. .+..++|++||.|.|
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEE
Confidence 888998653 455578999999988
No 64
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=26.13 E-value=30 Score=23.43 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=18.5
Q ss_pred ceeecCeEcCC--CceEEecCCCEEEE
Q psy2133 68 GTFLNRCKIKP--KMYVRIHVGHMLSF 92 (207)
Q Consensus 68 GTfVNg~rI~~--~~~~~L~~Gd~I~f 92 (207)
-..||++.++. .....|++||.|.|
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEE
Confidence 47888887752 23457999999987
No 65
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=25.65 E-value=35 Score=22.58 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=18.0
Q ss_pred cceeecCeEcCCCceEEecCCCEEEE
Q psy2133 67 HGTFLNRCKIKPKMYVRIHVGHMLSF 92 (207)
Q Consensus 67 nGTfVNg~rI~~~~~~~L~~Gd~I~f 92 (207)
--..||++.|.. ....|++||.|.|
T Consensus 43 ~~vavN~~~v~~-~~~~l~~gDeV~i 67 (74)
T 3rpf_C 43 CAIALNDHLIDN-LNTPLKDGDVISL 67 (74)
T ss_dssp CEEEESSSEECC-TTCCCCTTCEEEE
T ss_pred cEEEECCEEcCC-CCcCCCCCCEEEE
Confidence 446778877543 3457999999876
No 66
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=23.98 E-value=46 Score=23.32 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=18.2
Q ss_pred eeecCeEcC--CCceEEecCCCEEEE
Q psy2133 69 TFLNRCKIK--PKMYVRIHVGHMLSF 92 (207)
Q Consensus 69 TfVNg~rI~--~~~~~~L~~Gd~I~f 92 (207)
.+||+..+. .+.-+.|++||.|.|
T Consensus 67 v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 67 TLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp EEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCcCCCCEEEE
Confidence 788998764 233468999999987
No 67
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=23.61 E-value=16 Score=23.86 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=18.0
Q ss_pred ceeecCeEcCCCc--eEEecCCCEEEE
Q psy2133 68 GTFLNRCKIKPKM--YVRIHVGHMLSF 92 (207)
Q Consensus 68 GTfVNg~rI~~~~--~~~L~~Gd~I~f 92 (207)
-+.||+..+++.. ...|+.||.|.|
T Consensus 33 ~vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEEECCEECCchhcCCcCCCCCCEEEE
Confidence 3678888877532 247999999866
No 68
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=23.47 E-value=56 Score=25.28 Aligned_cols=26 Identities=12% Similarity=0.410 Sum_probs=19.6
Q ss_pred cceeecCeEcC-CCceEEecCCCEEEEcC
Q psy2133 67 HGTFLNRCKIK-PKMYVRIHVGHMLSFGS 94 (207)
Q Consensus 67 nGTfVNg~rI~-~~~~~~L~~Gd~I~fG~ 94 (207)
....|||+++. ++ ..|.+||+|.+-.
T Consensus 76 G~V~VNG~~v~~ps--~~V~~gD~I~V~~ 102 (159)
T 1c05_A 76 GHILVDGSRVNIPS--YRVKPGQTIAVRE 102 (159)
T ss_dssp TCEEETTEECCCSS--CBCCTTCEEEECG
T ss_pred CCEEECCEEeCcCC--cEeCCCCEEEEeC
Confidence 44789999884 54 4688999988854
No 69
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=22.05 E-value=21 Score=24.01 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=18.5
Q ss_pred ceeecCeEcCCCceEEecCCCEEEE
Q psy2133 68 GTFLNRCKIKPKMYVRIHVGHMLSF 92 (207)
Q Consensus 68 GTfVNg~rI~~~~~~~L~~Gd~I~f 92 (207)
-..||++.++.. ..|++||.|.|
T Consensus 48 ~VavNg~~v~~~--~~L~dGD~V~i 70 (77)
T 1rws_A 48 IAKVNGKVVLED--DEVKDGDFVEV 70 (77)
T ss_dssp CEEETTEEECSS--SCCCSSCCCBC
T ss_pred EEEECCEECCCC--CCcCCCCEEEE
Confidence 578899888765 57999998865
Done!