RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2133
(207 letters)
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA
splicing, transcription; NMR {Mus musculus}
Length = 140
Score = 111 bits (279), Expect = 9e-32
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 2 LKSGQIVNTIDLSTRSFYCVGRERNT-HLNLLHPTVSRYHAILQYKSTFDEKDPARGFYV 60
+K +++ + + + +Y GR + + H + SR HA L Y + ++
Sbjct: 40 VKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKH------LKRVFL 93
Query: 61 YDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSE 106
DL STHGTFL +++P +I + +SFG+STR + L+ +
Sbjct: 94 IDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQ 139
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 1.80A {Saccharomyces cerevisiae}
Length = 158
Score = 88.7 bits (219), Expect = 1e-22
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 3 KSGQIVNTIDLSTRSFYCVGRERNTH---------------LNLLHPTVSRYHAILQYKS 47
K DL+ RS Y VGRE + + T S+ H ++Q+++
Sbjct: 42 KDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRN 101
Query: 48 TFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTR 97
YV DL S++GT LN I Y+ + G +L+
Sbjct: 102 V----RGILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEE 147
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Length = 205
Score = 80.7 bits (198), Expect = 3e-19
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 19/112 (16%)
Query: 1 ELKSGQIVNTIDLSTRSFYCVGRERNT---------------HLNLLHPTVSRYHAILQY 45
K DL+ RS Y VGRE + + T S+ H ++Q+
Sbjct: 87 NDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQF 146
Query: 46 KSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTR 97
+ YV DL S++GT LN I Y+ + G +L+
Sbjct: 147 R----NVRGILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEE 194
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA
domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO;
1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A*
3uot_A* 3un0_B
Length = 132
Score = 76.8 bits (189), Expect = 2e-18
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 2 LKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVY 61
VGR + + L P++S+ HA+++ + +
Sbjct: 30 FSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEIS------AWNKAPILQ 83
Query: 62 DLGSTHGTFLN--RCKIKPKMYVRIHVGHMLSFGSST-RFFILQGP 104
D GS +GT + + P + R+ ++ F ++ L P
Sbjct: 84 DCGSLNGTQIVKPPRVLPPGVSHRLRDQELILFADFPCQYHRLDVP 129
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide,
cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae}
PDB: 2jql_A*
Length = 151
Score = 76.2 bits (187), Expect = 5e-18
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 10 TIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGT 69
++++ R+ +GR R+ + L P +S +HA D + R S +GT
Sbjct: 31 KVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHL-LQMDVDNFQRNLINVIDKSRNGT 89
Query: 70 FLNRCKIKPKMYVRIHVGHMLSFGSSTRF-FILQGPSEDEEEESELSVSELKEQRRQE 126
F+N ++ K + G + FG S F F S + E + VS R
Sbjct: 90 FINGNRL-VKKDYILKNGDRIVFGKSCSFLFKYASSSSTDIENDDEKVSSESRSYRSH 146
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring
finger protein 8, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.26.1.2
Length = 145
Score = 75.4 bits (185), Expect = 9e-18
Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 19/126 (15%)
Query: 2 LKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHP----TVSRYHAILQYKSTFDEKDPARG 57
+ G + L VGR L+ +SR H +L+ +P
Sbjct: 21 RRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQ-------NPEGQ 73
Query: 58 FYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSEDEEEESELSVS 117
+ + D S +G +LNR +++P IH G + G E E E V+
Sbjct: 74 WTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLE--------NKENAEYEYEVT 125
Query: 118 ELKEQR 123
E +
Sbjct: 126 EEDWET 131
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase,
signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP:
b.26.1.2
Length = 138
Score = 73.4 bits (180), Expect = 4e-17
Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 18/140 (12%)
Query: 2 LKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHP----TVSRYHAILQYKSTFDEKDPARG 57
+ G + L VGR L+ +SR H +L+ +P
Sbjct: 13 RRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQ-------NPEGQ 65
Query: 58 FYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSEDEEEESELSVS 117
+ + D S +G +LNR +++P IH G + G +++ E
Sbjct: 66 WTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLE-------NKENAEYEYEVTE 118
Query: 118 ELKEQRRQEKEKKEREALEK 137
E E K + +EK
Sbjct: 119 EDWETIYPCLSPKNDQMIEK 138
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 118
Score = 69.4 bits (170), Expect = 8e-16
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 10 TIDLSTRSFYCVGR-ERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHG 68
+D S VGR R + + +S H ++ S + + DLGS++G
Sbjct: 26 ALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS--------GNWVIQDLGSSNG 77
Query: 69 TFLNRCKIKPKMYVRIHVGHMLSFGSSTRFF--ILQGPS 105
T LN + P+ V + G ++ G T + GPS
Sbjct: 78 TLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVSGPS 116
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Length = 106
Score = 62.7 bits (153), Expect = 2e-13
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 10 TIDLSTRSFYCVGRERNT-HLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHG 68
L + Y VG + + L ++SR HA + + DLGS +G
Sbjct: 18 EFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIII-------GNDNSVLIEDLGSKNG 70
Query: 69 TFLNRCKIKPKMYVRIHVGHMLSFGSST-RFFILQGPS 105
+ KI+ + + +++ G++ PS
Sbjct: 71 VIVEGRKIEHQ--STLSANQVVALGTTLFLLVDYAAPS 106
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 60.7 bits (147), Expect = 3e-12
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 21 VGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80
GR + + L TVSR HA + F V D+GS +GT++NR
Sbjct: 70 AGRHPESDIFLDDVTVSRRHAEFRINE--------GEFEVVDVGSLNGTYVNREPRNA-- 119
Query: 81 YVRIHVGHMLSFGSSTRFFILQGPSE 106
+ G + G R L GP+E
Sbjct: 120 -QVMQTGDEIQIG-KFRLVFLAGPAE 143
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase;
NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 139
Score = 59.9 bits (145), Expect = 6e-12
Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 12 DLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFL 71
S++ +GR + L L VS HA + + ST + + D+GS +GT +
Sbjct: 27 TSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNST------KFKWELVDMGSLNGTLV 80
Query: 72 NRCKIKPKMY--------VRIHVGHMLSFGSSTRFFILQGPSEDEEEESELSVS 117
N I V + +++ G++T+ ++ + + ++ V+
Sbjct: 81 NSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQNEFQIPFKIGVA 134
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein
complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium
smegmatis}
Length = 115
Score = 58.9 bits (143), Expect = 6e-12
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 21 VGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80
GR ++ + L TVSR HA + F V D+GS +GT++NR +
Sbjct: 35 AGRHPDSDIFLDDVTVSRRHAEFRL--------EGGEFQVVDVGSLNGTYVNREPVDS-- 84
Query: 81 YVRIHVGHMLSFGSSTRFFILQGPSEDEEEES 112
+ G + G F+ S+D +
Sbjct: 85 -AVLANGDEVQIGKFRLVFLTGPKSDDSGSNA 115
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular
interaction, glutamate metabolism, phosphoprotein,
protein binding; HET: TPO; NMR {Mycobacterium
tuberculosis} PDB: 2kkl_A
Length = 162
Score = 59.2 bits (143), Expect = 1e-11
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 21 VGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80
GR ++ + L TVSR HA + ++ F V D+GS +GT++NR +
Sbjct: 79 AGRHPDSDIFLDDVTVSRRHAEFRLEN--------NEFNVVDVGSLNGTYVNREPVDS-- 128
Query: 81 YVRIHVGHMLSFGSSTRFFILQGPSEDEEEES 112
+ G + G R L GP + E++ S
Sbjct: 129 -AVLANGDEVQIG-KFRLVFLTGPKQGEDDGS 158
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 56.7 bits (137), Expect = 7e-11
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 21 VGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80
GR + + P VS+ H ++ +++ ST+ T +N I
Sbjct: 37 FGRGIECDIRIQLPVVSKQHCKIEIHEQ--------EAILHNFSSTNPTQVNGSVIDEP- 87
Query: 81 YVRIHVGHMLSFGSSTRFFILQGPSEDEEEESELSVSELKEQR 123
VR+ G +++ + F + S +S +++EQ
Sbjct: 88 -VRLKHGDVITIIDRS--FRYENESLQNGRKSTEFPRKIREQE 127
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 56.1 bits (135), Expect = 2e-10
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 21 VGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80
+GR ++ L VSR H +++ + DL ST+GT +N ++
Sbjct: 89 IGRGQDAQFRLPDTGVSRRHLEIRWDGQ--------VALLADLNSTNGTTVNNAPVQE-- 138
Query: 81 YVRIHVGHMLSFGSSTRFFILQ 102
++ G ++ G S I++
Sbjct: 139 -WQLADGDVIRLGHSE--IIVR 157
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA
domain, synthetic peptide, peptide binding protein;
1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A
Length = 100
Score = 54.6 bits (132), Expect = 2e-10
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 21 VGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80
+GR ++ L VSR H +++ + DL ST+GT +N ++
Sbjct: 27 IGRGQDAQFRLPDTGVSRRHLEIRWDGQ--------VALLADLNSTNGTTVNNAPVQE-- 76
Query: 81 YVRIHVGHMLSFGSST 96
++ G ++ G S
Sbjct: 77 -WQLADGDVIRLGHSE 91
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
phosphoprotein, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Length = 164
Score = 55.8 bits (134), Expect = 3e-10
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 13/111 (11%)
Query: 15 TRSFYCVGRERNTHLNLL-HPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNR 73
+ + GR +L +S H + G + + ST+GT+LN
Sbjct: 62 IKKVWTFGRNPACDYHLGNISRLSNKHFQILLG--------EDGNLLLNDISTNGTWLNG 113
Query: 74 CKIKPKMYVRIHVGHMLSFGSSTR----FFILQGPSEDEEEESELSVSELK 120
K++ + G ++ G ++ + ++ + V ++
Sbjct: 114 QKVEKNSNQLLSQGDEITVGVGVESDILSLVIFINDKFKQCLEQNKVDRIR 164
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.50A {Synechocystis SP}
Length = 131
Score = 53.7 bits (129), Expect = 1e-09
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 15 TRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARG--FYVYDLGSTHGTFLN 72
T +FY +GR + + VSR HA+L KS+ D + R S +G +N
Sbjct: 28 TETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMIN 87
Query: 73 RCKIKPKMYVRIHVGHMLSFGSSTRFF 99
K++ I G + G
Sbjct: 88 GKKVQEH---IIQTGDEIVMGPQVSVR 111
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 52.9 bits (127), Expect = 2e-09
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 2 LKSGQIVNTIDLSTRSFYCVGRERNTHLNLL-HPTVSRYHAILQYKSTFDEKDPARGFYV 60
Q++ + + GR +L +S H + G +
Sbjct: 22 ADISQVLKEKRS-IKKVWTFGRNPACDYHLGNISRLSNKHFQILLG--------EDGNLL 72
Query: 61 YDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSS 95
+ ST+GT+LN K++ + G ++ G
Sbjct: 73 LNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVG 107
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 52.1 bits (125), Expect = 3e-09
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 2 LKSGQIVNTIDLSTRSFYCVGRERNTHLNLLH-PTVSRYHAILQYKSTFDEKDPARGFYV 60
L + + + L R + +GR R L+ VS H + DEK +
Sbjct: 10 LGAEEGEPHVLLRKRE-WTIGRRRGCDLSFPSNKLVSGDHCRI----VVDEKS--GQVTL 62
Query: 61 YDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSS 95
D ST GT +N+ K+ K + G ++
Sbjct: 63 EDT-STSGTVINKLKVVKKQTCPLQTGDVIYLVYR 96
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain,
BRCT domain, phosphoprotein binding, phosp binding, DNA
repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe}
PDB: 3hue_A* 3i0m_A* 3i0n_A*
Length = 325
Score = 52.9 bits (126), Expect = 1e-08
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 19 YCVGR---ERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARG---FYVYDLGSTHGTFLN 72
Y VGR + ++H+ ++ ++S+ HA + ++ G F V DL + GT +N
Sbjct: 23 YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVN 82
Query: 73 RCKIKPKMYVRIHVGHMLSFGSSTRFFILQ 102
+ + G
Sbjct: 83 EKVVGQNGDSYKEKDLKIQLGKCPFTINAY 112
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2;
phosphoprotein-binding domain, checkpoint kinase,
transferase; HET: TPO; 2.7A {Homo sapiens} SCOP:
b.26.1.2
Length = 149
Score = 49.7 bits (118), Expect = 4e-08
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 14/106 (13%)
Query: 15 TRSFYCVGRERNTHLNLLHP---------TVSRYHAILQYKSTFDEKDPARGFYVYDLGS 65
Y GR+++ P T S+ H + + + S
Sbjct: 46 VNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRI----FREVGPKNSYIAYIEDHS 101
Query: 66 THGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRF-FILQGPSEDEEE 110
+GTF+N + ++ ++ S F+ + D++
Sbjct: 102 GNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDDQS 147
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel
beta-sheets, transferase; NMR {Saccharomyces cerevisiae}
SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A*
1k2m_A* 1k2n_A*
Length = 158
Score = 42.1 bits (98), Expect = 2e-05
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 11/131 (8%)
Query: 19 YCVGRERNTHLNLLHPTVSRYHAILQYKSTF-------DEKDPARGFYVYDLGSTHGTFL 71
+ +GR + + + +SR H + K + T+ ++L
Sbjct: 29 FFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYL 87
Query: 72 NRCKIKPKMYVRIHVG---HMLSFGSSTRFFILQGPSEDEEEESELSVSELKEQRRQEKE 128
N ++ + G ++ ++ + D + L+EQR K+
Sbjct: 88 NNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDTTGLFNEGLGMLQEQRVVLKQ 147
Query: 129 KKEREALEKSL 139
E + L K L
Sbjct: 148 TAEEKDLVKKL 158
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2
Length = 182
Score = 41.8 bits (97), Expect = 4e-05
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 11/131 (8%)
Query: 19 YCVGRERNTHLNLLHPTVSRYHAILQYKSTF-------DEKDPARGFYVYDLGSTHGTFL 71
+ +GR + + + +SR H + K + T+ ++L
Sbjct: 53 FFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYL 111
Query: 72 NRCKIKPKMYVRIHVGHMLSF---GSSTRFFILQGPSEDEEEESELSVSELKEQRRQEKE 128
N ++ + G + ++ + D + L+EQR K+
Sbjct: 112 NNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDTTGLFNEGLGMLQEQRVVLKQ 171
Query: 129 KKEREALEKSL 139
E + L K L
Sbjct: 172 TAEEKDLVKKL 182
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 39.8 bits (92), Expect = 2e-04
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 100 ILQGPSEDEEEESELSVSELKEQR-RQEKEKKEREALEKSLEQEAKTEEEDEGISWGMGD 158
I Q +E ES +++ R Q K +E +A K +EQE + + + + W
Sbjct: 74 IAQADRLTQEPES------IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 159 DAEEETDLSENPYASTNNEELYLDDPKKTL 188
+ E + N ++ + P +
Sbjct: 128 SEQVEKNKINN----RIADKAFYQQPDADI 153
Score = 30.9 bits (69), Expect = 0.17
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 29/79 (36%)
Query: 121 EQRRQEKE--KKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEETDLSENPYASTNNEE 178
++ QE E +K RE EQ + +E D A + E+
Sbjct: 78 DRLTQEPESIRKWRE------EQRKRLQELDA---------ASKVM------------EQ 110
Query: 179 LYLDDPKKTLRGWFDREGK 197
+ + KK L W R+ +
Sbjct: 111 EWREKAKKDLEEWNQRQSE 129
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 37.2 bits (86), Expect = 8e-04
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 19 YCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKP 78
+G + + L + H I+ + G + TF+N +
Sbjct: 50 TLIGSANSQDIQLCGMGILPEHCIIDIT--------SEGQVMLTPQKNTRTFVNGSSVSS 101
Query: 79 KMYVRIHVGHMLSFGSSTRF 98
+++H G + +G++ F
Sbjct: 102 P--IQLHHGDRILWGNNHFF 119
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 36.2 bits (84), Expect = 0.004
Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 15/120 (12%)
Query: 9 NTIDLSTRSFYCVGRERNTHLNL---------LHPTVSRYHAILQYKSTFDEKDPARGFY 59
++ + Y GR+++ + T S+ H + + A Y
Sbjct: 21 ANLECVNDN-YWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIA---Y 76
Query: 60 VYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRF-FILQGPSEDEEEESELSVSE 118
+ D S +GTF+N + ++ ++ S F+ + D++ ++ +
Sbjct: 77 IEDH-SGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDDQSVYPKALRD 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.026
Identities = 43/236 (18%), Positives = 73/236 (30%), Gaps = 51/236 (21%)
Query: 13 LSTRSF-YCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVY-DLGSTHG-T 69
+ TR + R N + VSR L+ + E PA+ + LGS G T
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKT 164
Query: 70 FL--NRC---KIKPKMYVRIHVGHMLSFGSSTR----FFILQ----------GPSEDEEE 110
++ + C K++ KM +I L+ + +LQ D
Sbjct: 165 WVALDVCLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 111 ESELSVSELKEQ-RRQEKEKKEREAL-----------EKSLEQEAKT--EEEDEGISWGM 156
+L + ++ + RR K K L + K + ++ +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 157 GDDAEEETDLSENPYASTNNEEL-----YLDDPKKTLRGWFDREG-KGFPLFTFLI 206
L + T +E YLD + L RE P +I
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP----REVLTTNPRRLSII 333
Score = 32.1 bits (72), Expect = 0.14
Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 29/131 (22%)
Query: 23 RERNTHL-NLLHPTVSRYHAILQYKSTFDEKDPA--RGFYVYDLGSTHGTFLNRCKIKPK 79
R+ N H + I+ +S+ + +PA R + L F I
Sbjct: 338 RDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMF-DRLS----VFPPSAHIPTI 390
Query: 80 MYVRIHVGHMLSFGSSTRFFILQGPSEDEEEESELSVSELKEQRRQEKEKKEREALEKSL 139
+ I + + + + V++L + EK+ KE S+
Sbjct: 391 LLSLIW-------------------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 140 EQEAKTEEEDE 150
E K + E+E
Sbjct: 432 YLELKVKLENE 442
Score = 26.7 bits (58), Expect = 6.3
Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 35/184 (19%)
Query: 17 SFYCVGRERNTHLNLLHPT-VSRYHAILQYKSTFDEKDPARG-FYVYDLGSTHGTFLN-- 72
S Y + + + LH + V Y+ + S FY + +G H +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGH-HLKNIEHP 487
Query: 73 -RCKIKPKMYVRIHVGHMLSFGSSTRFF----ILQGPSEDEEEESELSVSELKEQRRQ-E 126
R + ++ L F RF + + ++ +LK +
Sbjct: 488 ERMTLFRMVF--------LDF----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 127 KEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEETDLSENPYA-STNNEELYLDDPK 185
+ E L ++ EE+ S + TDL A +E ++ + K
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICS--------KYTDLLR--IALMAEDEAIFEEAHK 585
Query: 186 KTLR 189
+ R
Sbjct: 586 QVQR 589
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 33.6 bits (77), Expect = 0.037
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 104 PSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGI-SWGMGDDAEE 162
+E E +E + E + E +E + E+ AK E DE + + + AEE
Sbjct: 107 IEREELPLPEDVNAEAVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELETALAAEAAEE 166
Query: 163 ETDLSENPYASTNNEELYLDDPKKTLRGWFDREGKG 198
+ EE+ + K T G+F R +
Sbjct: 167 AVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARLKRS 202
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 30.6 bits (69), Expect = 0.23
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 75 KIKPKMYVRIHVGHMLSFGSSTRFF------ILQGPSEDEEEESELSVSELKEQRRQEKE 128
++KP++ H+ +S GSS FF L+ E + + L+ +
Sbjct: 11 EVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI 70
Query: 129 KKEREALEKSLEQEAKTEEEDEGISW 154
+ ++ + +E E E I
Sbjct: 71 QADQTPEDLDMEDNDIIEAHREQIGG 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.23
Identities = 37/242 (15%), Positives = 69/242 (28%), Gaps = 86/242 (35%)
Query: 2 LKSGQIVNTIDLSTRSFYCVGRERNTHLNLLH-PT---------------VSRYHAILQY 45
L G + + + + T SF+ + + +L PT V ++ L Y
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF---LGY 67
Query: 46 KSTFDEKDPA---------------RGF--------YVYDLGSTHGTFLNRCKIKPKMYV 82
S+ E + L + T L + K K Y+
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 83 --RIHVGHMLSFGSS-----------TRFFIL---QGPSED--EE-----EESELSVSEL 119
RI S+ + + QG ++D EE + + V +L
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 120 KEQRRQEKEKKEREALEKSLEQEAKTEEEDE-----GI---SWGMGDDAEEETD-LSENP 170
+ ++L + +T + E G+ W + D L P
Sbjct: 188 I------------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 171 YA 172
+
Sbjct: 236 IS 237
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease,
amyloidos apoptosis, cell adhesion, disease mutation;
NMR {Homo sapiens}
Length = 176
Score = 30.7 bits (68), Expect = 0.25
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 102 QGPSEDEEEESELSVSELKEQRRQEKEKKE--REALEKSLEQEAKTEEEDEGISWGMGD 158
D+ SE ++ + E E S A + E+ G+ G+GD
Sbjct: 36 TVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAAVQELSSSILAGEDPEERGVKLGLGD 94
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 30.3 bits (68), Expect = 0.31
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 100 ILQGPSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGIS--WGMG 157
+L+ + S+ R +E +++ A E + E+ + E ++E
Sbjct: 181 VLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEAT 240
Query: 158 DDAEEETDLSE 168
+ AEE D E
Sbjct: 241 EWAEENADNVE 251
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.1 bits (68), Expect = 0.61
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 101 LQGPSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
++ ++ + E+E VSELKEQ K E+E L + + +AK E
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQ--NTLLKTEKEELNRRIHDQAKEITETM 1057
Score = 29.7 bits (67), Expect = 0.84
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 108 EEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEE 148
+E+ E K + E E L +E+ +EEE
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978
Score = 28.9 bits (65), Expect = 1.3
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 105 SEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEED 149
E +L S+++ R E+E K SL++E ++
Sbjct: 956 ITYSTETEKLR-SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999
Score = 27.8 bits (62), Expect = 3.0
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
E++ + + + E ++ + EK LE + E + D
Sbjct: 927 ENKIMQLQRKIDEQNKEYKSLLEKMNN--LEITYSTETEKLRSDV 969
Score = 26.6 bits (59), Expect = 8.0
Identities = 9/61 (14%), Positives = 22/61 (36%)
Query: 108 EEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEETDLS 167
+ + +R +K K E ++E+ + E + + + + +E L
Sbjct: 889 AIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948
Query: 168 E 168
E
Sbjct: 949 E 949
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 29.0 bits (64), Expect = 0.92
Identities = 8/54 (14%), Positives = 25/54 (46%)
Query: 104 PSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGISWGMG 157
P E + E++++ E + + + ++ + + E+ +++DE +G
Sbjct: 292 PEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAGDALG 345
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 28.6 bits (63), Expect = 1.5
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
+ E++ + + + E ++ E+EA + Q+ + E E
Sbjct: 656 RSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE 700
Score = 28.6 bits (63), Expect = 1.8
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
+ E+E+ + K + E EK +E LE A +
Sbjct: 678 QRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNA 722
Score = 28.2 bits (62), Expect = 2.0
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 109 EEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEE 148
E E + ++LK Q + + E E ++K E E
Sbjct: 736 EGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARA 775
Score = 27.5 bits (60), Expect = 4.1
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEE 163
+ + + SV E +E + ++ LEQEA+ E + I D +E E
Sbjct: 648 QRTRDALQRSVQLAIEITTNSQEAAAKHEAQR-LEQEARGRLERQKIL----DQSEAE 700
Score = 27.1 bits (59), Expect = 4.8
Identities = 8/45 (17%), Positives = 14/45 (31%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
E E+ EL E + + EA ++ + E
Sbjct: 698 EAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVL 742
Score = 26.7 bits (58), Expect = 7.9
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
+ E E++ + EL+ + +A +S + A+ E E
Sbjct: 696 QSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGS 740
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 28.6 bits (64), Expect = 1.5
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 103 GPSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEE 162
GPS+D+ ESE E+ E E S + + + + + E
Sbjct: 1 GPSDDDLLESEDDYGS-------EEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLE 53
Query: 163 ETDLSENPYASTNNEE 178
E + E NN +
Sbjct: 54 EGKVLEKTVPDLNNCK 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.6
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 128 EKKEREALEKSLEQEA 143
EK+ + L+ SL+ A
Sbjct: 18 EKQALKKLQASLKLYA 33
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 28.5 bits (64), Expect = 1.6
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 16/77 (20%)
Query: 21 VGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80
+GR + + L VSR+HA++ D + + DL S++G +
Sbjct: 310 IGRLHDNDIVLDSANVSRHHAVIV--------DTGTNYVINDLRSSNGVHVQH------- 354
Query: 81 YVRIHVGHMLSFGSSTR 97
RI L+ G R
Sbjct: 355 -ERIRSAVTLNDGDHIR 370
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 27.6 bits (60), Expect = 2.3
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 117 SELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEETDLSENPYASTNN 176
+LK E + E+ E+ A+ EE++E D+ E+E D ++
Sbjct: 11 EQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEE 70
Query: 177 EELYLDDPKKTLR 189
EE + D + LR
Sbjct: 71 EE--VTDQLEDLR 81
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.3 bits (63), Expect = 2.4
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEETD 165
+ + E +SEL+ R +KE+K R+ LEK K E E + + + + +
Sbjct: 1031 TKLKNKHESMISELEV--RLKKEEKSRQELEKIKR---KLEGESSDLHEQIAELQAQIAE 1085
Query: 166 LSEN 169
L
Sbjct: 1086 LKAQ 1089
Score = 27.1 bits (60), Expect = 4.6
Identities = 8/50 (16%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 106 EDEEEESELSVSELKEQRRQEKEK-----KEREALEKSLEQEAKTEEEDE 150
+ E+ ++ + ++++ +++ KER+ LE+ + E+E
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024
Score = 26.7 bits (59), Expect = 6.8
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
E EE E +L+ +++ K +++ LE+ LE+E ++ +
Sbjct: 933 EARIEEEEERSQQLQAEKK--KMQQQMLDLEEQLEEEEAARQKLQ 975
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 27.6 bits (60), Expect = 2.8
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 100 ILQGPSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEE 148
I Q +E ES E + +R QE + + ++ E+ K EE
Sbjct: 89 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 137
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.1 bits (59), Expect = 5.2
Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 13/112 (11%)
Query: 76 IKPKMYVRIHVGHM----LSFGSSTR--FFILQGPSEDEEEES-------ELSVSELKEQ 122
P + I + F E+ + LS + +
Sbjct: 764 FTPTTVIGIRGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKA 823
Query: 123 RRQEKEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEETDLSENPYAST 174
R ++ +K++ E+ ++ + E+E E G+ + E + + +N Y+S
Sbjct: 824 RAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSK 875
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 26.8 bits (59), Expect = 6.0
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKE-REALEKSLEQEAKTEEEDEGISWGMGDDAEEET 164
++ +++L+V + + +R+ +EKK E+ E+E K + E + +EE
Sbjct: 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQ 321
Query: 165 DLSENPYASTNNEE 178
+ S E
Sbjct: 322 KSNTAGSQSQVETE 335
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 26.9 bits (60), Expect = 6.2
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 108 EEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
E + E E + + L + E TE +D
Sbjct: 929 EAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPE-LTERKDT 970
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 26.7 bits (58), Expect = 6.5
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 101 LQGPSEDEEEESELSVSELKEQRRQ-EKEKKEREALEKSLEQEAKTEE 147
LQ E ++ E EL+E+RRQ E EK EA ++ LEQ+ +
Sbjct: 360 LQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRT 407
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 26.5 bits (59), Expect = 6.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 105 SEDEEEESELS-VSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
+D+ E ELS V EL R + K RE EK ++ K E+E +
Sbjct: 204 VKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESD 250
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase;
HET: PLP; 1.90A {Homo sapiens}
Length = 471
Score = 26.5 bits (59), Expect = 7.1
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 23 RERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGS 65
+ L + + Q + D FYV DLG
Sbjct: 15 GNEEFDCHFLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGD 57
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule
binding domain, protein binding; 1.75A {Homo sapiens}
PDB: 3nry_A
Length = 130
Score = 25.7 bits (56), Expect = 7.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 116 VSELKEQRRQEKEKKEREALEKSLEQEAKTEEE 148
+ + EQ + +KER E+ L+ + +TE E
Sbjct: 93 MEYVAEQWEMHRLEKERAKQERQLKNKKQTETE 125
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 7.9
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 173 STNNEEL-YLDDPKKTLRGWFDREGKGF 199
S EE + P + R GF
Sbjct: 1151 SNTLEEFEHGRTPAEMSRP-ATTTRNGF 1177
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 26.3 bits (58), Expect = 8.2
Identities = 7/64 (10%), Positives = 27/64 (42%)
Query: 107 DEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEETDL 166
+ + E+++ E + R K+ L + + ++ + + W ++ + ++
Sbjct: 156 NIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNM 215
Query: 167 SENP 170
++ P
Sbjct: 216 ADEP 219
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm,
transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus aureus}
PDB: 2hro_A
Length = 572
Score = 26.3 bits (59), Expect = 8.6
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 104 PSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKT 145
P+EDE Q ++E+ +++ L+K + + T
Sbjct: 233 PTEDELIAY---------QDKRERYFADKKELQKLRDADTVT 265
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.2 bits (57), Expect = 8.9
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 105 SEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEET 164
+E+E+EL +E + + ++ KK + +K LE + K +DE ++ A E
Sbjct: 348 QRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLE-DKKKSLDDEVNAFKQRKTAAELL 406
Query: 165 DLSENPYASTNNEE 178
+ + +
Sbjct: 407 QSQGSQAGGSQTLK 420
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 26.4 bits (59), Expect = 9.2
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 104 PSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKT 145
P+ + ++ + QE+ E+ L K + A T
Sbjct: 231 PTNEVIDKM---------RAVQEQVASEKAELAKLKDLPAIT 263
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.383
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,107,050
Number of extensions: 175893
Number of successful extensions: 778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 184
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.9 bits)