RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2133
(207 letters)
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 158
Score = 69.8 bits (170), Expect = 7e-16
Identities = 20/149 (13%), Positives = 53/149 (35%), Gaps = 10/149 (6%)
Query: 2 LKSGQIVNTIDLS-TRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEK-------D 53
L I ++++ + + +GR + + + +SR H + K K
Sbjct: 11 LPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQ 70
Query: 54 PARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSEDEEEESE 113
+ T+ ++LN ++ + G + + G + + +
Sbjct: 71 GLDDIWYCHT-GTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDTTG 129
Query: 114 LSVSELKEQRRQEKEKKEREALEKSLEQE 142
L +E ++++ ++ A EK L ++
Sbjct: 130 L-FNEGLGMLQEQRVVLKQTAEEKDLVKK 157
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 118
Score = 67.0 bits (163), Expect = 3e-15
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 2 LKSGQIVNTIDLSTRSFYCVGRE-RNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYV 60
+K + + +D S VGR R + + +S H ++ S + +
Sbjct: 18 VKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS--------GNWVI 69
Query: 61 YDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFI--LQGPS 105
DLGS++GT LN + P+ V + G ++ G T + + GPS
Sbjct: 70 QDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVSGPS 116
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 122
Score = 56.3 bits (135), Expect = 3e-11
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 14 STRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNR 73
S++ +GR + L L VS HA + + + + D+GS +GT +N
Sbjct: 27 SSKLPVKLGRVSPSDLALKDSEVSGKHAQITWN------STKFKWELVDMGSLNGTLVNS 80
Query: 74 CKIKPKMY--------VRIHVGHMLSFGSSTRFFI 100
I V + +++ G++T+ ++
Sbjct: 81 HSISHPDLGSRKWGNPVELASDDIITLGTTTKVYV 115
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 52.0 bits (124), Expect = 8e-10
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 10/97 (10%)
Query: 4 SGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDL 63
S ++ I VG+ + + L + H + + D +
Sbjct: 14 SECLLYHIK---DGVTRVGQV-DMDIKLTGQFIREQHCLFRSIPQPD----GEVVVTLEP 65
Query: 64 GSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFI 100
T++N + + + G+ + G + F
Sbjct: 66 CEGAETYVNGKLV--TEPLVLKSGNRIVMGKNHVFRF 100
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 50.2 bits (119), Expect = 6e-09
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 17/125 (13%)
Query: 3 KSGQIVNTIDLSTRSFYCVGRERNTHLNLLHP----TVSRYHAILQYKSTFDEKDPARGF 58
+ G + L VGR L+ +SR H +L+ +P +
Sbjct: 10 RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQ-------NPEGQW 62
Query: 59 YVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSEDEEEESELSVSE 118
+ D S +G +LNR +++P IH G + G + E+ E E E++ +
Sbjct: 63 TIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLG------VPLENKENAEYEYEVTEED 116
Query: 119 LKEQR 123
+
Sbjct: 117 WETIY 121
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 127
Score = 48.2 bits (114), Expect = 3e-08
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 13 LSTRSFYCVGRERNTHLNLL-HPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFL 71
S + + GR +L +S H + + + ST+GT+L
Sbjct: 32 RSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG--------NLLLNDISTNGTWL 83
Query: 72 NRCKIKPKMYVRIHVGHMLSFGSS 95
N K++ + G ++ G
Sbjct: 84 NGQKVEKNSNQLLSQGDEITVGVG 107
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
C-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 99
Score = 44.6 bits (105), Expect = 4e-07
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 1 ELKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYV 60
++ SG+ L + +GR + + L VSR+HA++ + +
Sbjct: 11 DIASGR---GYPLQAAA-TRIGRLHDNDIVLDSANVSRHHAVIVDTG--------TNYVI 58
Query: 61 YDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFF 99
DL S++G + +I+ V ++ G + F
Sbjct: 59 NDLRSSNGVHVQHERIRSA--VTLNDGDHIRICDHEFTF 95
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 38.7 bits (89), Expect = 5e-05
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 21 VGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKM 80
+ R + SR L DP + + ++KP +
Sbjct: 24 LVLGRGPLTQVTDRKCSRTQVELVA-------DPETRTVAVKQLGVNPSTTGTQELKPGL 76
Query: 81 YVRIHVGHMLSFGSSTRFFILQ 102
+ VG L + L+
Sbjct: 77 EGSLGVGDTLYLVNGLHPLTLR 98
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 27.7 bits (61), Expect = 0.85
Identities = 5/45 (11%), Positives = 13/45 (28%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
E +++ + Q R + ER+ + +
Sbjct: 212 EAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIA 256
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 26.8 bits (59), Expect = 1.3
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
+ EE + EK + ERE ++K++E+ + +
Sbjct: 51 LEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAK 95
Score = 25.2 bits (55), Expect = 4.2
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 102 QGPSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
+ PS +E ++ + E ++ + E K E E E K EE+
Sbjct: 40 RDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENN 88
Score = 24.8 bits (54), Expect = 5.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 99 FILQGPSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
IL+ PS D E S+ ++ +E +KK A E+ QEA+ +
Sbjct: 19 VILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA 70
Score = 24.8 bits (54), Expect = 6.1
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 105 SEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
E E E + ++ E + KEK ++ +EA E
Sbjct: 73 REHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLE 118
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 27.0 bits (58), Expect = 1.9
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 91 SFGSSTRFFILQGPSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEE 148
+ + + F LQ P D E L + +L ++ + E L + + +
Sbjct: 18 TMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQ-SGELSPEAVFFTYLGKAWEVNKG 74
>d1dvoa_ a.136.1.1 (A:) Repressor of bacterial conjugation FinO
{Escherichia coli [TaxId: 562]}
Length = 152
Score = 26.4 bits (58), Expect = 2.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 108 EEEESELSVSELKEQRRQEKEKKEREA 134
+EE + L + RRQ + K E +A
Sbjct: 123 SQEEEVYAAERLDKIRRQNRIKAELQA 149
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 26.2 bits (57), Expect = 3.0
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 106 EDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDE 150
E+ E +E +Q EK E + ++ EQE + +
Sbjct: 228 RKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 272
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 25.4 bits (55), Expect = 3.8
Identities = 10/66 (15%), Positives = 25/66 (37%)
Query: 97 RFFILQGPSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGISWGM 156
+ +L P E ++ E + ++ Q+ +E L + +++ G+
Sbjct: 21 KIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI 80
Query: 157 GDDAEE 162
D A+
Sbjct: 81 DDMAQH 86
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Length = 297
Score = 24.9 bits (54), Expect = 7.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 116 VSELKEQRRQEKEKKEREALEKSLE 140
VS+ R++EKEK E+EAL K+ E
Sbjct: 87 VSQFLLFRKEEKEKNEKEALLKASE 111
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 197
Score = 24.5 bits (53), Expect = 8.4
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 101 LQGPSEDEEEESELSVSELKEQRRQE--KEKKEREALEKSLEQEAKTEEEDEGISWGMGD 158
G + E + ++ + ELK++ E +E R + K L++ A+ + M D
Sbjct: 11 TVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSD 70
Query: 159 DAEEETDLSENPYAS 173
+ Y S
Sbjct: 71 GMARDAGGKIFTYGS 85
>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus
subtilis [TaxId: 1423]}
Length = 315
Score = 24.6 bits (53), Expect = 9.5
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 146 EEEDEGISWGMGDDAEEETDLSENPYASTNNEELYLDDPKKTLRGWFDREGKGFP-LFTF 204
E G W + + + ++ PY EL+ + + + EG FP L
Sbjct: 30 PSESTGECWAISAHPKGPSTVANGPYKGKTLIELWEEHREV----FGGVEGDRFPLLTKL 85
Query: 205 L 205
L
Sbjct: 86 L 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.133 0.383
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 767,119
Number of extensions: 35077
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 48
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)