BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2134
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 79.3 bits (194), Expect = 7e-15, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 57/96 (59%), Gaps = 18/96 (18%)
Query: 12 EKQSDDEAYGQVEKVVIYNEKQS---DDEASEVIVKIFVSFSKMQEAEYARDALNGRFFA 68
E Q + +G V +V+I+NEKQ+ DD+ +E+IVKIFV FS A
Sbjct: 557 EIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAG---------------A 601
Query: 69 EAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
EA ++AL+GRFF GR V AELYDQ +FD D SG
Sbjct: 602 EAMRGKEALDGRFFGGRRVVAELYDQGIFDQGDLSG 637
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 15/85 (17%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 489 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 533
Query: 80 RFFAGRMVRAELYDQSLFDHNDFSG 104
R+FAGR V AE+YDQ FD++D S
Sbjct: 534 RWFAGRKVVAEVYDQERFDNSDLSA 558
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 15/85 (17%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 490 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 534
Query: 80 RFFAGRMVRAELYDQSLFDHNDFSG 104
R+FAGR V AE+YDQ FD++D S
Sbjct: 535 RWFAGRKVVAEVYDQERFDNSDLSA 559
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 15/85 (17%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 495 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------MASETHKAIQALNG 539
Query: 80 RFFAGRMVRAELYDQSLFDHNDFSG 104
R+F GR V AE+YDQ FD++D S
Sbjct: 540 RWFGGRKVVAEVYDQERFDNSDLSA 564
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 15/85 (17%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 495 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------MASETHKAIQALNG 539
Query: 80 RFFAGRMVRAELYDQSLFDHNDFSG 104
R+F GR V AE+YDQ FD++D S
Sbjct: 540 RWFGGRKVVAEVYDQERFDNSDLSA 564
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 15/85 (17%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A LNG
Sbjct: 461 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------VASETHKAIQDLNG 505
Query: 80 RFFAGRMVRAELYDQSLFDHNDFSG 104
R+FAGR V AE+YDQ FD++D S
Sbjct: 506 RWFAGRKVVAEVYDQERFDNSDLSA 530
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 15/85 (17%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
YG V +V+IY E+Q +++ +E+IVKIFV FS DA E A ALN
Sbjct: 447 YGAVNRVIIYQERQGEEDDAEIIVKIFVEFS---------DA------GEMNKAIQALNN 491
Query: 80 RFFAGRMVRAELYDQSLFDHNDFSG 104
R+FAGR V AELYDQ F+ +D +
Sbjct: 492 RWFAGRKVVAELYDQDRFNSSDLTA 516
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic
OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2
Length = 387
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
YG V +V+I+ + + E V+IFV FS+ +E A L+GR+F
Sbjct: 311 YGTVTRVLIFEITEPNFPVHEA-VRIFVQFSRPEETTKALVDLDGRYFG----------- 358
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
GR VRA YD+ F N+ +
Sbjct: 359 ----GRTVRATFYDEEKFSKNELA 378
>sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1
Length = 401
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 20/87 (22%)
Query: 12 EKQSDDEAYGQVEKVVIYN-EKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEA 70
E + + E YG+V K VI+ DDEA V+IF+ F +++ A A ++
Sbjct: 325 ETKEECEKYGKVGKCVIFEIPGAPDDEA----VRIFLEFERVESAIKA--VVD------- 371
Query: 71 EYARDALNGRFFAGRMVRAELYDQSLF 97
LNGR+F GR+V+A Y+ F
Sbjct: 372 ------LNGRYFGGRVVKACFYNLDKF 392
>sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1
Length = 405
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 20/87 (22%)
Query: 12 EKQSDDEAYGQVEKVVIYN-EKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEA 70
E + + E YG+V K VI+ DDEA V+IF+ F +++ A A ++
Sbjct: 329 ETKEECEKYGKVGKCVIFEIPGAPDDEA----VRIFLEFERVESAIKA--VVD------- 375
Query: 71 EYARDALNGRFFAGRMVRAELYDQSLF 97
LNGR+F GR+V+A Y+ F
Sbjct: 376 ------LNGRYFGGRVVKACFYNLDKF 396
>sp|Q87S63|CLPB_VIBPA Chaperone protein ClpB OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=clpB PE=3 SV=1
Length = 857
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 1 YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVK-IFVSFSKMQEAEYAR 59
YG++ ++ EKQ D +++++ + K +D+E +EV+ K + SKM EAE +
Sbjct: 503 YGRIPEL----EKQLDLATQAEMQEMTLLRNKVTDNEIAEVLSKQTGIPVSKMLEAEKEK 558
Query: 60 -----DALNGRFFAEAE 71
D L+ R ++E
Sbjct: 559 LLRMEDVLHNRVVGQSE 575
>sp|Q9KU18|CLPB_VIBCH Chaperone protein ClpB OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=clpB PE=3 SV=1
Length = 857
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 1 YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVK-IFVSFSKMQEAEYAR 59
YG++ ++ EKQ D A +++++ + K +D E +EV+ K + SKM EAE +
Sbjct: 503 YGRIPEL----EKQLDLAAQAEMQEMTLLRNKVTDAEIAEVLSKQTGIPVSKMLEAEKEK 558
Query: 60 -----DALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQS 95
D L+ R + E N A R RA L D +
Sbjct: 559 LLRMEDVLHKRVIGQKEAVEVVAN----AIRRSRAGLSDPN 595
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 RFFAEAEYARDALNGRFFAGRMVRAELYD 93
R EA+Y L+GR+F GR + A+ +D
Sbjct: 320 RDPEEADYCIQTLDGRWFGGRQITAQAWD 348
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+GQ+ K+++++ + D AS VSF +EA+Y L+GR+F + A +G
Sbjct: 298 FGQIRKLLLFD-RHPDGVAS-------VSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 349
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 65 RFFAEAEYARDALNGRFFAGRMVRAELYD 93
R EA+Y L+GR+F GR + A+ +D
Sbjct: 320 RDPEEADYCIQTLDGRWFGGRQITAQAWD 348
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+GQ+ K+++++ + D AS VSF +EA+Y L+GR+F + A +G
Sbjct: 298 FGQIRKLLLFD-RHPDGVAS-------VSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 349
>sp|Q1ZXC2|PAP1B_DICDI Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum
GN=pabpc1B PE=3 SV=1
Length = 814
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 46 FVSFSKMQEAEYARDALNGRFFAEAE 71
F+SFS++QEA+ A D+LNG F +
Sbjct: 514 FISFSEIQEAQKALDSLNGFTFGSKQ 539
>sp|A1BJZ7|YIDC_CHLPD Membrane protein insertase YidC OS=Chlorobium phaeobacteroides
(strain DSM 266) GN=yidC PE=3 SV=1
Length = 579
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 6 KVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFV--SFSKM---QEAEYARD 60
K+ +N +E Q + ++Y+EK +DE+ + ++ SF K+ ++ E R+
Sbjct: 186 KLTGFNNALVGNEYQVQWDGGLVYSEKNREDESHNALAGSYLGGSFVKLDASKDKESYRE 245
Query: 61 ---------ALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSL 96
AL ++F A R A G F GR A ++ L
Sbjct: 246 EQSGLAKWVALRNKYFVAAIIPRGATEGIFLEGRKTAATHFEDYL 290
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFA 68
YG V + I + DD + K+FV F+ + + A+ AL GR FA
Sbjct: 422 YGIVRSLEI--PRPYDDHPVPGVGKVFVEFATTSDCQRAQAALTGRKFA 468
>sp|Q8DEV2|CLPB_VIBVU Chaperone protein ClpB OS=Vibrio vulnificus (strain CMCP6) GN=clpB
PE=3 SV=1
Length = 857
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 1 YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVK-IFVSFSKMQEAEYAR 59
YG++ ++ EKQ D +++++ + K +D+E +EV+ K + SKM EAE +
Sbjct: 503 YGRIPEL----EKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEK 558
Query: 60 -----DALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQS 95
+ L+ R + E N A R RA L D +
Sbjct: 559 LLRMEEVLHKRVIGQKEAVEVVAN----AIRRSRAGLSDPN 595
>sp|Q7MNK1|CLPB_VIBVY Chaperone protein ClpB OS=Vibrio vulnificus (strain YJ016) GN=clpB
PE=3 SV=1
Length = 857
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 1 YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVK-IFVSFSKMQEAEYAR 59
YG++ ++ EKQ D +++++ + K +D+E +EV+ K + SKM EAE +
Sbjct: 503 YGRIPEL----EKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEK 558
Query: 60 -----DALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQS 95
+ L+ R + E N A R RA L D +
Sbjct: 559 LLRMEEVLHKRVIGQKEAVEVVAN----AIRRSRAGLSDPN 595
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFA 68
I + +++ +G + VVI + E + + K+F+ ++ + + AR +LNG
Sbjct: 494 ILEDMRTECGKFGSLVNVVI-PRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNG---- 548
Query: 69 EAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
R F G V A Y ++ F D+ G
Sbjct: 549 -----------RKFGGNQVVAVFYPENKFYEGDYDG 573
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+GQ+ K+++++ + D AS VSF + +EA++ L+GR+F + A +G
Sbjct: 299 FGQIRKLLLFD-RHPDGVAS-------VSFREPEEADHCIQTLDGRWFGGRQITAQAWDG 350
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 73 ARDALNGRFFAGRMVRAELYDQSLFDHNDF 102
AR LNGR F G V A Y ++ F D+
Sbjct: 524 ARQGLNGRKFGGNQVVAVFYPENKFSEGDY 553
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,243,734
Number of Sequences: 539616
Number of extensions: 1246523
Number of successful extensions: 3564
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3486
Number of HSP's gapped (non-prelim): 90
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)