Query psy2134
Match_columns 104
No_of_seqs 112 out of 662
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 16:54:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01645 half-pint poly-U bin 99.9 2.1E-22 4.6E-27 174.6 8.9 82 8-104 531-612 (612)
2 KOG0124|consensus 99.8 1.2E-21 2.6E-26 165.1 6.2 82 8-104 463-544 (544)
3 KOG1996|consensus 99.8 5.2E-20 1.1E-24 151.3 5.9 80 7-104 297-376 (378)
4 KOG0120|consensus 99.7 6.1E-17 1.3E-21 138.4 7.0 83 5-103 418-500 (500)
5 TIGR01642 U2AF_lg U2 snRNP aux 99.6 9.1E-16 2E-20 124.5 8.3 80 7-102 430-509 (509)
6 TIGR01622 SF-CC1 splicing fact 99.6 3.5E-15 7.5E-20 119.9 7.3 71 7-100 383-453 (457)
7 KOG0147|consensus 99.5 2.9E-14 6.2E-19 123.0 6.1 69 7-99 464-532 (549)
8 smart00361 RRM_1 RNA recogniti 99.5 3.3E-13 7.1E-18 85.7 8.3 66 8-90 4-70 (70)
9 KOG1548|consensus 99.5 1.4E-13 3.1E-18 114.4 7.6 65 8-95 288-352 (382)
10 PF13893 RRM_5: RNA recognitio 99.3 6.3E-11 1.4E-15 71.5 8.6 55 13-91 1-55 (56)
11 KOG2202|consensus 99.0 5.5E-11 1.2E-15 95.4 1.3 72 8-99 80-152 (260)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.6 1.8E-07 4E-12 72.5 8.8 67 9-94 282-348 (352)
13 PF14259 RRM_6: RNA recognitio 98.6 7.9E-07 1.7E-11 54.6 8.6 60 9-88 11-70 (70)
14 smart00360 RRM RNA recognition 98.5 1.6E-06 3.5E-11 50.0 7.6 62 9-89 9-70 (71)
15 PF00076 RRM_1: RNA recognitio 98.5 2.3E-06 5E-11 51.3 8.3 60 9-88 11-70 (70)
16 KOG0107|consensus 98.4 5.1E-07 1.1E-11 70.2 5.7 61 9-93 23-83 (195)
17 smart00362 RRM_2 RNA recogniti 98.4 3.9E-06 8.5E-11 48.7 7.8 60 9-89 12-71 (72)
18 PLN03134 glycine-rich RNA-bind 98.4 3.4E-06 7.3E-11 61.0 9.0 65 9-92 47-111 (144)
19 cd00590 RRM RRM (RNA recogniti 98.3 9.1E-06 2E-10 47.4 8.5 62 9-90 12-73 (74)
20 TIGR01628 PABP-1234 polyadenyl 98.2 6.9E-06 1.5E-10 68.7 8.2 66 8-93 297-362 (562)
21 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.2 1.3E-05 2.8E-10 62.3 8.7 66 9-93 16-81 (352)
22 TIGR01622 SF-CC1 splicing fact 97.9 8.6E-05 1.9E-09 60.0 8.9 65 10-93 200-264 (457)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.9 6.4E-05 1.4E-09 62.8 7.9 60 10-92 110-171 (481)
24 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.9 7.9E-05 1.7E-09 62.2 8.3 62 8-93 288-349 (481)
25 TIGR01659 sex-lethal sex-letha 97.8 6.8E-05 1.5E-09 61.4 7.6 65 9-92 120-184 (346)
26 TIGR01648 hnRNP-R-Q heterogene 97.8 7.4E-05 1.6E-09 65.4 8.0 58 10-94 247-306 (578)
27 TIGR01659 sex-lethal sex-letha 97.8 0.00016 3.5E-09 59.2 8.9 67 9-94 206-274 (346)
28 KOG0124|consensus 97.8 4.6E-06 9.9E-11 71.5 -0.1 69 1-98 475-543 (544)
29 TIGR01628 PABP-1234 polyadenyl 97.8 0.00014 3.1E-09 60.9 8.7 65 9-92 13-77 (562)
30 PLN03120 nucleic acid binding 97.7 0.00022 4.9E-09 57.5 8.2 63 8-93 16-78 (260)
31 KOG4207|consensus 97.7 6.6E-05 1.4E-09 60.2 4.9 65 8-91 25-89 (256)
32 TIGR01645 half-pint poly-U bin 97.6 0.00024 5.2E-09 62.8 7.5 65 8-91 119-183 (612)
33 TIGR01642 U2AF_lg U2 snRNP aux 97.6 0.00053 1.1E-08 56.1 8.9 64 10-92 309-372 (509)
34 KOG0125|consensus 97.6 0.00022 4.8E-09 60.0 6.5 61 11-93 111-172 (376)
35 COG0724 RNA-binding proteins ( 97.5 0.00093 2E-08 46.4 7.7 66 8-92 127-192 (306)
36 KOG0114|consensus 97.4 0.00071 1.5E-08 49.5 6.7 64 10-95 32-95 (124)
37 KOG0148|consensus 97.3 0.00084 1.8E-08 55.5 7.0 60 8-92 176-235 (321)
38 KOG0148|consensus 97.3 0.00061 1.3E-08 56.3 5.8 62 11-91 77-138 (321)
39 PLN03121 nucleic acid binding 97.1 0.0027 5.9E-08 51.0 8.1 64 7-93 16-79 (243)
40 KOG0108|consensus 97.1 0.0013 2.8E-08 56.2 6.5 71 5-94 27-97 (435)
41 KOG0127|consensus 97.0 0.0022 4.7E-08 57.2 7.1 61 11-91 132-192 (678)
42 KOG0123|consensus 96.8 0.0055 1.2E-07 50.9 7.5 56 17-94 97-152 (369)
43 COG5175 MOT2 Transcriptional r 96.8 0.0037 8E-08 53.5 6.3 59 17-91 141-199 (480)
44 KOG0144|consensus 96.7 0.0019 4.2E-08 56.1 3.9 59 3-66 131-189 (510)
45 KOG0113|consensus 96.6 0.01 2.2E-07 49.6 7.6 65 8-91 113-177 (335)
46 TIGR01648 hnRNP-R-Q heterogene 96.6 0.0073 1.6E-07 53.2 7.0 55 7-66 69-123 (578)
47 KOG0117|consensus 96.6 0.0069 1.5E-07 52.8 6.5 58 10-94 273-330 (506)
48 PLN03213 repressor of silencin 96.2 0.021 4.5E-07 51.1 7.3 62 8-92 22-85 (759)
49 KOG0122|consensus 96.0 0.03 6.4E-07 45.8 7.1 65 10-93 203-267 (270)
50 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.056 1.2E-06 37.8 7.6 68 9-92 18-89 (100)
51 KOG1456|consensus 95.9 0.012 2.6E-07 50.9 4.5 40 16-64 142-181 (494)
52 KOG0105|consensus 95.9 0.019 4.2E-07 45.8 5.4 62 10-93 20-81 (241)
53 KOG0109|consensus 95.8 0.015 3.3E-07 48.7 4.7 56 10-92 92-147 (346)
54 KOG4206|consensus 95.7 0.028 6.1E-07 44.7 5.7 55 16-92 33-87 (221)
55 KOG0144|consensus 95.5 0.034 7.4E-07 48.6 5.7 57 2-62 40-96 (510)
56 PF14605 Nup35_RRM_2: Nup53/35 95.0 0.068 1.5E-06 33.0 4.6 41 9-59 13-53 (53)
57 KOG0145|consensus 95.0 0.094 2E-06 43.9 6.7 67 10-95 55-121 (360)
58 KOG4660|consensus 94.8 0.015 3.2E-07 51.4 1.7 56 4-68 83-138 (549)
59 KOG0110|consensus 94.7 0.17 3.6E-06 46.2 8.0 68 10-93 529-596 (725)
60 KOG2314|consensus 94.6 0.056 1.2E-06 48.7 4.8 54 13-86 81-134 (698)
61 KOG4208|consensus 94.6 0.076 1.7E-06 42.2 5.1 56 21-95 75-130 (214)
62 KOG0123|consensus 94.5 0.13 2.9E-06 42.7 6.5 58 11-90 13-70 (369)
63 KOG0121|consensus 94.5 0.15 3.3E-06 38.6 6.1 63 9-90 49-111 (153)
64 KOG0145|consensus 94.3 0.17 3.7E-06 42.3 6.7 57 17-92 299-355 (360)
65 KOG4209|consensus 93.7 0.13 2.7E-06 40.5 4.7 72 1-92 106-177 (231)
66 KOG0117|consensus 92.3 0.65 1.4E-05 40.9 7.4 57 4-64 91-147 (506)
67 KOG0132|consensus 92.2 0.47 1E-05 44.1 6.6 64 2-90 427-490 (894)
68 PF08952 DUF1866: Domain of un 91.6 1.5 3.2E-05 33.0 7.6 60 8-95 48-107 (146)
69 KOG0149|consensus 91.5 0.45 9.8E-06 38.6 5.2 47 10-60 26-72 (247)
70 KOG1190|consensus 91.3 0.54 1.2E-05 41.2 5.8 53 17-93 319-371 (492)
71 KOG0127|consensus 91.3 0.86 1.9E-05 41.2 7.1 48 9-60 305-352 (678)
72 KOG0126|consensus 91.1 0.13 2.9E-06 40.8 1.7 55 17-90 56-110 (219)
73 PF08777 RRM_3: RNA binding mo 91.0 0.64 1.4E-05 32.2 5.0 43 10-62 15-57 (105)
74 PF15023 DUF4523: Protein of u 90.4 0.98 2.1E-05 34.7 5.9 53 11-90 105-157 (166)
75 KOG0131|consensus 90.2 0.55 1.2E-05 37.2 4.5 55 17-90 30-84 (203)
76 KOG0130|consensus 89.7 0.81 1.8E-05 35.1 4.9 63 10-91 86-148 (170)
77 KOG0146|consensus 89.4 0.81 1.8E-05 38.5 5.1 49 7-60 30-78 (371)
78 KOG4661|consensus 89.3 0.87 1.9E-05 41.8 5.5 62 11-91 420-481 (940)
79 KOG4285|consensus 89.2 1.1 2.4E-05 37.9 5.8 51 13-89 213-263 (350)
80 PF04847 Calcipressin: Calcipr 89.1 2.4 5.1E-05 32.4 7.1 63 8-95 7-71 (184)
81 KOG0533|consensus 88.3 1.6 3.4E-05 35.0 5.9 62 7-83 94-155 (243)
82 KOG0111|consensus 88.1 0.72 1.6E-05 37.9 3.9 62 19-99 33-94 (298)
83 KOG0106|consensus 87.0 0.63 1.4E-05 36.8 2.9 54 10-90 15-68 (216)
84 KOG4212|consensus 86.8 1.3 2.7E-05 39.5 4.9 56 13-92 553-608 (608)
85 KOG0415|consensus 84.5 2.1 4.5E-05 37.3 5.0 63 11-92 254-316 (479)
86 KOG0147|consensus 83.3 3.6 7.8E-05 36.8 6.1 61 13-92 295-355 (549)
87 KOG0146|consensus 82.1 1.9 4.2E-05 36.3 3.8 40 17-60 306-345 (371)
88 KOG0110|consensus 81.8 1.8 3.8E-05 39.8 3.7 62 11-91 628-689 (725)
89 KOG1190|consensus 81.0 1.3 2.9E-05 38.8 2.6 38 15-60 169-206 (492)
90 KOG0153|consensus 81.0 7.4 0.00016 33.4 6.9 67 4-95 236-302 (377)
91 PF11767 SET_assoc: Histone ly 80.4 3.4 7.4E-05 27.0 3.8 16 45-60 36-51 (66)
92 KOG0131|consensus 79.9 3.2 6.9E-05 32.9 4.2 58 17-92 117-174 (203)
93 KOG0109|consensus 79.5 5.1 0.00011 33.9 5.5 60 5-91 11-70 (346)
94 KOG0226|consensus 78.2 1.4 3.1E-05 36.4 1.8 32 43-89 233-264 (290)
95 KOG4454|consensus 75.5 4.4 9.6E-05 33.2 3.9 48 11-64 23-71 (267)
96 PF11608 Limkain-b1: Limkain b 73.6 5.9 0.00013 27.9 3.7 36 44-94 41-76 (90)
97 KOG0106|consensus 70.9 3.3 7.2E-05 32.8 2.2 56 10-92 113-168 (216)
98 KOG1457|consensus 69.3 5 0.00011 33.0 2.9 28 43-85 78-105 (284)
99 KOG2068|consensus 69.3 2.1 4.7E-05 35.9 0.8 58 18-91 102-159 (327)
100 PF07576 BRAP2: BRCA1-associat 66.7 24 0.00051 25.0 5.6 41 22-68 40-80 (110)
101 KOG1995|consensus 52.0 8.6 0.00019 32.7 1.5 48 25-91 103-150 (351)
102 KOG0151|consensus 48.9 33 0.00072 32.3 4.8 65 8-88 186-250 (877)
103 KOG0116|consensus 48.2 23 0.00049 30.6 3.5 47 10-60 302-348 (419)
104 KOG1548|consensus 48.1 67 0.0015 27.8 6.2 61 10-90 148-216 (382)
105 PF04059 RRM_2: RNA recognitio 47.1 94 0.002 21.5 5.9 51 7-63 16-66 (97)
106 KOG4212|consensus 47.0 52 0.0011 29.7 5.5 53 18-90 67-119 (608)
107 PRK13817 ribosome-binding fact 46.9 26 0.00056 24.9 3.1 37 19-63 30-66 (119)
108 KOG4574|consensus 46.4 8.7 0.00019 36.5 0.8 35 16-60 318-352 (1007)
109 TIGR00082 rbfA ribosome-bindin 41.0 49 0.0011 23.1 3.8 36 41-80 45-81 (114)
110 KOG4210|consensus 40.9 22 0.00048 28.7 2.2 64 11-94 200-263 (285)
111 PF12007 DUF3501: Protein of u 39.4 31 0.00066 27.0 2.7 46 4-60 60-105 (192)
112 PRK13818 ribosome-binding fact 38.4 56 0.0012 23.3 3.7 25 19-51 30-54 (121)
113 PF02033 RBFA: Ribosome-bindin 37.8 1.2E+02 0.0026 20.2 5.2 37 20-64 28-65 (104)
114 KOG1996|consensus 37.6 7.8 0.00017 33.0 -0.9 32 48-92 338-369 (378)
115 KOG4205|consensus 37.5 34 0.00074 28.3 2.9 50 7-60 17-66 (311)
116 KOG1456|consensus 37.2 1.3E+02 0.0029 26.6 6.5 52 19-94 311-362 (494)
117 PF11823 DUF3343: Protein of u 35.5 57 0.0012 20.6 3.1 29 44-87 3-31 (73)
118 COG0858 RbfA Ribosome-binding 33.2 74 0.0016 22.6 3.7 31 11-49 24-54 (118)
119 KOG4019|consensus 32.3 72 0.0016 25.3 3.7 41 41-96 50-90 (193)
120 KOG4205|consensus 32.2 68 0.0015 26.6 3.8 49 8-60 109-157 (311)
121 PF03880 DbpA: DbpA RNA bindin 32.0 1.1E+02 0.0024 19.3 4.1 41 22-90 32-72 (74)
122 KOG2416|consensus 31.5 16 0.00034 33.7 0.0 42 13-64 461-503 (718)
123 KOG4211|consensus 30.5 1.9E+02 0.0041 26.0 6.4 44 10-60 24-67 (510)
124 KOG1457|consensus 28.7 1.1E+02 0.0023 25.4 4.3 43 10-60 224-266 (284)
125 PRK00521 rbfA ribosome-binding 28.5 1E+02 0.0022 21.5 3.7 11 41-51 47-57 (120)
126 KOG4211|consensus 28.3 72 0.0016 28.6 3.5 18 43-60 146-163 (510)
127 KOG4307|consensus 26.2 89 0.0019 29.7 3.8 34 42-90 909-942 (944)
128 PF10309 DUF2414: Protein of u 22.8 85 0.0019 20.3 2.3 17 45-61 45-61 (62)
129 KOG0804|consensus 22.5 1.2E+02 0.0027 27.0 3.9 42 21-83 100-141 (493)
No 1
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=2.1e-22 Score=174.56 Aligned_cols=82 Identities=50% Similarity=0.801 Sum_probs=76.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
+|++||++||+|||.|++|+|+.+++.+..+.+++|+|||+|++.++|.+|++ .||||||+||+|
T Consensus 531 dl~eDV~eEC~K~G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~---------------~LnGR~F~GR~V 595 (612)
T TIGR01645 531 FLEGEIREECGKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKA---------------ALDGRFFGGRTV 595 (612)
T ss_pred HHHHHHHHHhhcCceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHH---------------HhcCCeECCeEE
Confidence 58999999999999999999999776545566789999999999999999999 999999999999
Q ss_pred EEEEeccccccccCCCC
Q psy2134 88 RAELYDQSLFDHNDFSG 104 (104)
Q Consensus 88 ~a~~yd~~~f~~~~~~~ 104 (104)
.|+|||+++|+++||+|
T Consensus 596 ~a~~yd~~~f~~~~l~~ 612 (612)
T TIGR01645 596 VAEAYDQILFDHADLSG 612 (612)
T ss_pred EEEEcCHHHhhccccCC
Confidence 99999999999999987
No 2
>KOG0124|consensus
Probab=99.85 E-value=1.2e-21 Score=165.07 Aligned_cols=82 Identities=50% Similarity=0.818 Sum_probs=79.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
+|+.||++||+|||.|.+|.||++++++.++.+-+|||||+|+...++.+|.. +||||||+||.|
T Consensus 463 ~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~---------------ALdGRfFgGr~V 527 (544)
T KOG0124|consen 463 DLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQ---------------ALDGRFFGGRKV 527 (544)
T ss_pred HHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHH---------------hhccceecCcee
Confidence 68999999999999999999999999988889999999999999999999999 899999999999
Q ss_pred EEEEeccccccccCCCC
Q psy2134 88 RAELYDQSLFDHNDFSG 104 (104)
Q Consensus 88 ~a~~yd~~~f~~~~~~~ 104 (104)
.|+.||+..|++.||||
T Consensus 528 vAE~YDQ~~FD~~Dlsg 544 (544)
T KOG0124|consen 528 VAEVYDQERFDNSDLSG 544 (544)
T ss_pred ehhhhhhhcccccccCC
Confidence 99999999999999997
No 3
>KOG1996|consensus
Probab=99.80 E-value=5.2e-20 Score=151.31 Aligned_cols=80 Identities=31% Similarity=0.560 Sum_probs=72.8
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
-+|++|+.+||+|||+|.+|.||..+..+ .+..|+|||+|+.+++|.+|+- .||||+|+||+
T Consensus 297 ~elede~keEceKyg~V~~viifeip~~p---~deavRiFveF~r~e~aiKA~V---------------dlnGRyFGGr~ 358 (378)
T KOG1996|consen 297 EELEDETKEECEKYGKVGNVIIFEIPSQP---EDEAVRIFVEFERVESAIKAVV---------------DLNGRYFGGRV 358 (378)
T ss_pred HHHHHHHHHHHHhhcceeeEEEEecCCCc---cchhheeeeeeccHHHHHHHHH---------------hcCCceeccee
Confidence 38999999999999999999999975543 3467999999999999999999 99999999999
Q ss_pred EEEEEeccccccccCCCC
Q psy2134 87 VRAELYDQSLFDHNDFSG 104 (104)
Q Consensus 87 V~a~~yd~~~f~~~~~~~ 104 (104)
|.|.||+.++|+.++|.+
T Consensus 359 v~A~Fyn~ekfs~~ela~ 376 (378)
T KOG1996|consen 359 VSACFYNLEKFSNLELAE 376 (378)
T ss_pred eeheeccHHhhhhhhhhh
Confidence 999999999999999863
No 4
>KOG0120|consensus
Probab=99.68 E-value=6.1e-17 Score=138.44 Aligned_cols=83 Identities=28% Similarity=0.453 Sum_probs=75.4
Q ss_pred ehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC
Q psy2134 5 EKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG 84 (104)
Q Consensus 5 erv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G 84 (104)
|..+|.++++.||+|||.|.+|.|+++.. ......|.|||||+|++.++|++|.. +|+||.|++
T Consensus 418 EyeeIlEdvr~ec~k~g~v~~v~ipr~~~-~~~~~~G~GkVFVefas~ed~qrA~~---------------~L~GrKF~n 481 (500)
T KOG0120|consen 418 EYEEILEDVRTECAKFGAVRSVEIPRPYP-DENPVPGTGKVFVEFADTEDSQRAME---------------ELTGRKFAN 481 (500)
T ss_pred HHHHHHHHHHHHhcccCceeEEecCCCCC-CCCcCCCcccEEEEecChHHHHHHHH---------------HccCceeCC
Confidence 45689999999999999999999998743 23456799999999999999999999 999999999
Q ss_pred eEEEEEEeccccccccCCC
Q psy2134 85 RMVRAELYDQSLFDHNDFS 103 (104)
Q Consensus 85 R~V~a~~yd~~~f~~~~~~ 103 (104)
|+|.|.|||+++|..++|+
T Consensus 482 RtVvtsYydeDkY~~r~~~ 500 (500)
T KOG0120|consen 482 RTVVASYYDEDKYHAREFE 500 (500)
T ss_pred cEEEEEecCHHHhhccccC
Confidence 9999999999999999874
No 5
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.63 E-value=9.1e-16 Score=124.49 Aligned_cols=80 Identities=25% Similarity=0.509 Sum_probs=69.8
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.+|.+||++||++||.|++|+|+.+.... ....+.|.+||+|.+.++|.+|+. +||||+|+||.
T Consensus 430 ~~~~edl~~~f~~~G~v~~v~i~~~~~~~-~~~~~~G~~fV~F~~~e~A~~A~~---------------~lnGr~~~gr~ 493 (509)
T TIGR01642 430 EEIYEDVKTEFSKYGPLINIVIPRPNGDR-NSTPGVGKVFLEYADVRSAEKAME---------------GMNGRKFNDRV 493 (509)
T ss_pred HHHHHHHHHHHHhcCCeeEEEeeccCcCC-CcCCCcceEEEEECCHHHHHHHHH---------------HcCCCEECCeE
Confidence 45778999999999999999998763321 223578899999999999999999 99999999999
Q ss_pred EEEEEeccccccccCC
Q psy2134 87 VRAELYDQSLFDHNDF 102 (104)
Q Consensus 87 V~a~~yd~~~f~~~~~ 102 (104)
|.+.|||++.|..++|
T Consensus 494 v~~~~~~~~~~~~~~~ 509 (509)
T TIGR01642 494 VVAAFYGEDCYKAGDY 509 (509)
T ss_pred EEEEEeCHHHhhccCC
Confidence 9999999999998875
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.58 E-value=3.5e-15 Score=119.92 Aligned_cols=71 Identities=28% Similarity=0.505 Sum_probs=63.2
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.+|.+||++||++||.|++|.|..+.. .|.+||+|.+.++|..|++ +||||+|+||.
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~~~--------~G~~fV~F~~~e~A~~A~~---------------~lnGr~f~gr~ 439 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTKNS--------AGKIYLKFSSVDAALAAFQ---------------ALNGRYFGGKM 439 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCCCC--------ceeEEEEECCHHHHHHHHH---------------HhcCcccCCeE
Confidence 367899999999999999998875332 3789999999999999999 99999999999
Q ss_pred EEEEEecccccccc
Q psy2134 87 VRAELYDQSLFDHN 100 (104)
Q Consensus 87 V~a~~yd~~~f~~~ 100 (104)
|.+.|++++.|...
T Consensus 440 i~~~~~~~~~~~~~ 453 (457)
T TIGR01622 440 ITAAFVVNDVYDMS 453 (457)
T ss_pred EEEEEEcHHHHHhh
Confidence 99999999998764
No 7
>KOG0147|consensus
Probab=99.50 E-value=2.9e-14 Score=123.03 Aligned_cols=69 Identities=28% Similarity=0.391 Sum_probs=61.6
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.+|.+||.|||+|||.|.+ |++++++ .+.|||+|.+.+.|..|+. +||||||+|||
T Consensus 464 ~eI~edV~Eec~k~g~v~h--i~vd~ns-------~g~VYvrc~s~~~A~~a~~---------------alhgrWF~gr~ 519 (549)
T KOG0147|consen 464 QEIREDVIEECGKHGKVCH--IFVDKNS-------AGCVYVRCPSAEAAGTAVK---------------ALHGRWFAGRM 519 (549)
T ss_pred hHHHHHHHHHHHhcCCeeE--EEEccCC-------CceEEEecCcHHHHHHHHH---------------HHhhhhhccce
Confidence 4799999999999999966 7777764 2689999999999999999 99999999999
Q ss_pred EEEEEeccccccc
Q psy2134 87 VRAELYDQSLFDH 99 (104)
Q Consensus 87 V~a~~yd~~~f~~ 99 (104)
|.|.|.+...|..
T Consensus 520 Ita~~~~~~~Y~~ 532 (549)
T KOG0147|consen 520 ITAKYLPLERYHS 532 (549)
T ss_pred eEEEEeehhhhhh
Confidence 9999999887754
No 8
>smart00361 RRM_1 RNA recognition motif.
Probab=99.47 E-value=3.3e-13 Score=85.74 Aligned_cols=66 Identities=30% Similarity=0.523 Sum_probs=54.0
Q ss_pred eehhHHHHHhhhCCceeEEE-EecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVV-IYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~-I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
+|++++++||++||+|.+|. |+.+++.. .....+.+||+|.+.++|.+|+. .||||+|+||.
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~--~~~~rG~~fV~f~~~~dA~~A~~---------------~l~g~~~~gr~ 66 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGY--ENHKRGNVYITFERSEDAARAIV---------------DLNGRYFDGRT 66 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCC--CCCCcEEEEEEECCHHHHHHHHH---------------HhCCCEECCEE
Confidence 68899999999999999985 55544321 11234789999999999999999 99999999999
Q ss_pred EEEE
Q psy2134 87 VRAE 90 (104)
Q Consensus 87 V~a~ 90 (104)
|.++
T Consensus 67 l~~~ 70 (70)
T smart00361 67 VKAE 70 (70)
T ss_pred EEeC
Confidence 9873
No 9
>KOG1548|consensus
Probab=99.46 E-value=1.4e-13 Score=114.45 Aligned_cols=65 Identities=31% Similarity=0.574 Sum_probs=59.1
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
+|++|+++||+|||+|.+|+||..+|. |.+-|+|.+.++|..|++ .|+||||+||+|
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~hPd--------GvvtV~f~n~eeA~~ciq---------------~m~GR~fdgRql 344 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDRHPD--------GVVTVSFRNNEEADQCIQ---------------TMDGRWFDGRQL 344 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEeccCCC--------ceeEEEeCChHHHHHHHH---------------HhcCeeecceEE
Confidence 689999999999999999999987662 346789999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.|+.||..
T Consensus 345 ~A~i~DG~ 352 (382)
T KOG1548|consen 345 TASIWDGK 352 (382)
T ss_pred EEEEeCCc
Confidence 99999874
No 10
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=6.3e-11 Score=71.54 Aligned_cols=55 Identities=31% Similarity=0.515 Sum_probs=47.5
Q ss_pred HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEE
Q psy2134 13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAEL 91 (104)
Q Consensus 13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~ 91 (104)
+.+.|++||.|.+|.+...+. +.+||+|++.++|..|+. .|||+.|.|+.+.+.|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~---------~~a~V~f~~~~~A~~a~~---------------~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKR---------GFAFVEFASVEDAQKAIE---------------QLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTST---------TEEEEEESSHHHHHHHHH---------------HHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCC---------CEEEEEECCHHHHHHHHH---------------HhCCCEECCcEEEEEE
Confidence 356799999999999987651 369999999999999999 9999999999999875
No 11
>KOG2202|consensus
Probab=99.04 E-value=5.5e-11 Score=95.41 Aligned_cols=72 Identities=26% Similarity=0.521 Sum_probs=64.5
Q ss_pred eehhHHHHHhh-hCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDDE-AYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~-kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
+.++|+..|++ |||.|++++|...- ..+.++.|||+|...++|++|++ .||||||+|+.
T Consensus 80 efyEd~f~E~~~kygEiee~~Vc~Nl-----~~hl~GNVYV~f~~Ee~ae~a~~---------------~lnnRw~~G~p 139 (260)
T KOG2202|consen 80 EFYEDVFTELEDKYGEIEELNVCDNL-----GDHLVGNVYVKFRSEEDAEAALE---------------DLNNRWYNGRP 139 (260)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhccc-----chhhhhhhhhhcccHHHHHHHHH---------------HHcCccccCCc
Confidence 56899999999 99999999887643 34688999999999999999999 99999999999
Q ss_pred EEEEEeccccccc
Q psy2134 87 VRAELYDQSLFDH 99 (104)
Q Consensus 87 V~a~~yd~~~f~~ 99 (104)
|.|+|-+...|..
T Consensus 140 i~ae~~pvT~~re 152 (260)
T KOG2202|consen 140 IHAELSPVTDFRE 152 (260)
T ss_pred ceeeecCcCchhh
Confidence 9999999998864
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.65 E-value=1.8e-07 Score=72.54 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=56.6
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-.+++++-+++||.|++|.|..+..+. ...|-.||+|.+.++|..|+. +|||+.|+||.|+
T Consensus 282 ~e~~L~~~F~~fG~v~~v~i~~d~~t~----~skG~aFV~F~~~~~A~~Ai~---------------~lnG~~~~gr~i~ 342 (352)
T TIGR01661 282 DETVLWQLFGPFGAVQNVKIIRDLTTN----QCKGYGFVSMTNYDEAAMAIL---------------SLNGYTLGNRVLQ 342 (352)
T ss_pred CHHHHHHHHHhCCCeEEEEEeEcCCCC----CccceEEEEECCHHHHHHHHH---------------HhCCCEECCeEEE
Confidence 467888889999999999998765321 124568999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
..|...
T Consensus 343 V~~~~~ 348 (352)
T TIGR01661 343 VSFKTN 348 (352)
T ss_pred EEEccC
Confidence 998753
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.58 E-value=7.9e-07 Score=54.61 Aligned_cols=60 Identities=30% Similarity=0.388 Sum_probs=51.3
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=.+|+.+.++.||.|.+|.+...++ ....+..||+|+++++|..|++ .++|..|.||.|.
T Consensus 11 ~~~~l~~~f~~~g~v~~v~~~~~~~-----~~~~~~a~v~f~~~~~a~~al~---------------~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 11 TEEDLRNFFSRFGPVEKVRLIKNKD-----GQSRGFAFVEFSSEEDAKRALE---------------LLNGKEIDGRKLR 70 (70)
T ss_dssp -HHHHHHHCTTSSBEEEEEEEESTT-----SSEEEEEEEEESSHHHHHHHHH---------------HHTTEEETTEEEE
T ss_pred CHHHHHHHHHhcCCcceEEEEeeec-----cccCCEEEEEeCCHHHHHHHHH---------------HCCCcEECCEEcC
Confidence 3578999999999999999987644 1456789999999999999999 8889999999874
No 14
>smart00360 RRM RNA recognition motif.
Probab=98.48 E-value=1.6e-06 Score=50.04 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=50.7
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=.+|++.-++.||.|..+.|+..+.. ....+..||+|.+.++|..|+. .|+|..|.|+.+.
T Consensus 9 ~~~~l~~~f~~~g~v~~~~i~~~~~~----~~~~~~a~v~f~~~~~a~~a~~---------------~~~~~~~~~~~~~ 69 (71)
T smart00360 9 TEEELRELFSKFGKIESVRLVRDKDT----GKSKGFAFVEFESEEDAEKALE---------------ALNGKELDGRPLK 69 (71)
T ss_pred CHHHHHHHHHhhCCEeEEEEEeCCCC----CCCCceEEEEeCCHHHHHHHHH---------------HcCCCeeCCcEEE
Confidence 35788888999999999998875431 1234578999999999999999 8999999998886
Q ss_pred E
Q psy2134 89 A 89 (104)
Q Consensus 89 a 89 (104)
+
T Consensus 70 v 70 (71)
T smart00360 70 V 70 (71)
T ss_pred e
Confidence 4
No 15
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.47 E-value=2.3e-06 Score=51.30 Aligned_cols=60 Identities=25% Similarity=0.387 Sum_probs=50.4
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-.+|+++-.+.||.|..+.+..... ....+-.||+|.+.++|..|++ .|||..+.|+.|+
T Consensus 11 t~~~l~~~f~~~g~i~~~~~~~~~~-----~~~~~~a~V~F~~~~~a~~a~~---------------~l~g~~~~~~~ir 70 (70)
T PF00076_consen 11 TEEELRDFFSQFGKIESIKVMRNSS-----GKSKGYAFVEFESEEDAEKALE---------------ELNGKKINGRKIR 70 (70)
T ss_dssp SHHHHHHHHHTTSTEEEEEEEEETT-----SSEEEEEEEEESSHHHHHHHHH---------------HHTTEEETTEEEE
T ss_pred CHHHHHHHHHHhhhccccccccccc-----ccccceEEEEEcCHHHHHHHHH---------------HcCCCEECccCcC
Confidence 4578888899999999998887522 1245678999999999999999 9999999999875
No 16
>KOG0107|consensus
Probab=98.42 E-value=5.1e-07 Score=70.21 Aligned_cols=61 Identities=26% Similarity=0.323 Sum_probs=53.7
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-+.|++.+..+||++-+|+|-..++ +-.||+|+++.+|..|+. .|+|+.|.|..|+
T Consensus 23 ~k~eLE~~F~~yG~lrsvWvArnPP---------GfAFVEFed~RDA~DAvr---------------~LDG~~~cG~r~r 78 (195)
T KOG0107|consen 23 TKRELERAFSKYGPLRSVWVARNPP---------GFAFVEFEDPRDAEDAVR---------------YLDGKDICGSRIR 78 (195)
T ss_pred chHHHHHHHHhcCcceeEEEeecCC---------CceEEeccCcccHHHHHh---------------hcCCccccCceEE
Confidence 4678888999999999988877544 358999999999999999 9999999999999
Q ss_pred EEEec
Q psy2134 89 AELYD 93 (104)
Q Consensus 89 a~~yd 93 (104)
+++-.
T Consensus 79 VE~S~ 83 (195)
T KOG0107|consen 79 VELST 83 (195)
T ss_pred EEeec
Confidence 99764
No 17
>smart00362 RRM_2 RNA recognition motif.
Probab=98.39 E-value=3.9e-06 Score=48.71 Aligned_cols=60 Identities=28% Similarity=0.355 Sum_probs=49.7
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-.+|+++-.++||.|..+.+...+. ...+..||+|.+..+|..|+. .|+|..|.|+.+.
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~~------~~~~~~~v~f~~~~~a~~a~~---------------~~~~~~~~~~~i~ 70 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDTG------KSKGFAFVEFESEEDAEKAIE---------------ALNGTKLGGRPLR 70 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCC------CCCceEEEEeCCHHHHHHHHH---------------HhCCcEECCEEEe
Confidence 3578888899999999988886541 234568999999999999999 8999999998886
Q ss_pred E
Q psy2134 89 A 89 (104)
Q Consensus 89 a 89 (104)
+
T Consensus 71 v 71 (72)
T smart00362 71 V 71 (72)
T ss_pred e
Confidence 5
No 18
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.38 E-value=3.4e-06 Score=61.01 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=55.0
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++||.|.+|.|..++.+. ...+-.||+|++.++|+.|++ .|||..+.||.|.
T Consensus 47 te~~L~~~F~~~G~I~~v~i~~d~~tg----~~kGfaFV~F~~~e~A~~Al~---------------~lng~~i~Gr~l~ 107 (144)
T PLN03134 47 DDASLRDAFAHFGDVVDAKVIVDRETG----RSRGFGFVNFNDEGAATAAIS---------------EMDGKELNGRHIR 107 (144)
T ss_pred CHHHHHHHHhcCCCeEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence 367899999999999999998765421 234678999999999999999 9999999999999
Q ss_pred EEEe
Q psy2134 89 AELY 92 (104)
Q Consensus 89 a~~y 92 (104)
..+=
T Consensus 108 V~~a 111 (144)
T PLN03134 108 VNPA 111 (144)
T ss_pred EEeC
Confidence 8764
No 19
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.33 E-value=9.1e-06 Score=47.37 Aligned_cols=62 Identities=32% Similarity=0.430 Sum_probs=51.8
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-.+++++-++.+|.|.++.+...+.. ...+..||+|.+.++|..|++ .|+|..|.|+.+.
T Consensus 12 ~~~~i~~~~~~~g~i~~~~~~~~~~~-----~~~~~~~v~f~s~~~a~~a~~---------------~~~~~~~~~~~~~ 71 (74)
T cd00590 12 TEEDLRELFSKFGKVESVRIVRDKDT-----KSKGFAFVEFEDEEDAEKALE---------------ALNGKELGGRPLR 71 (74)
T ss_pred CHHHHHHHHHhcCCEEEEEEeeCCCC-----CcceEEEEEECCHHHHHHHHH---------------HhCCCeECCeEEE
Confidence 35788888999999999888865432 234678999999999999999 9999999999988
Q ss_pred EE
Q psy2134 89 AE 90 (104)
Q Consensus 89 a~ 90 (104)
+.
T Consensus 72 v~ 73 (74)
T cd00590 72 VE 73 (74)
T ss_pred Ee
Confidence 65
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.20 E-value=6.9e-06 Score=68.69 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=54.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+++++.+++||.|.++.|..+... ...+-.||.|++.++|.+|+. .|||+.|.|+.+
T Consensus 297 ~~~~~L~~~F~~~G~i~~~~i~~d~~g-----~~~g~gfV~f~~~~~A~~A~~---------------~~~g~~~~gk~l 356 (562)
T TIGR01628 297 VTDEKLRELFSECGEITSAKVMLDEKG-----VSRGFGFVCFSNPEEANRAVT---------------EMHGRMLGGKPL 356 (562)
T ss_pred cCHHHHHHHHHhcCCeEEEEEEECCCC-----CcCCeEEEEeCCHHHHHHHHH---------------HhcCCeeCCcee
Confidence 346889999999999999999876321 123467999999999999999 999999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 357 ~V~~a~ 362 (562)
T TIGR01628 357 YVALAQ 362 (562)
T ss_pred EEEecc
Confidence 988754
No 21
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.17 E-value=1.3e-05 Score=62.27 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=55.4
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++||+|.+|.|..++... .-.+-.||+|.+.++|.+|+. .|||..+.|+.|.
T Consensus 16 ~e~~l~~~F~~~G~i~~v~i~~d~~~g----~s~g~afV~f~~~~~A~~Ai~---------------~l~g~~l~g~~i~ 76 (352)
T TIGR01661 16 TQEEIRSLFTSIGEIESCKLVRDKVTG----QSLGYGFVNYVRPEDAEKAVN---------------SLNGLRLQNKTIK 76 (352)
T ss_pred CHHHHHHHHHccCCEEEEEEEEcCCCC----ccceEEEEEECcHHHHHHHHh---------------hcccEEECCeeEE
Confidence 467889999999999999998765421 134678999999999999999 9999999999999
Q ss_pred EEEec
Q psy2134 89 AELYD 93 (104)
Q Consensus 89 a~~yd 93 (104)
.++-.
T Consensus 77 v~~a~ 81 (352)
T TIGR01661 77 VSYAR 81 (352)
T ss_pred EEeec
Confidence 88754
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.90 E-value=8.6e-05 Score=60.03 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=54.7
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
++++++-+++||.|.+|.|...... ....+-.||+|.+.++|.+|+. .|||-.+.|+.|.+
T Consensus 200 e~~l~~~f~~~G~i~~v~~~~d~~~----g~~~g~afV~f~~~e~A~~A~~---------------~l~g~~i~g~~i~v 260 (457)
T TIGR01622 200 EQELRQIFEPFGDIEDVQLHRDPET----GRSKGFGFIQFHDAEEAKEALE---------------VMNGFELAGRPIKV 260 (457)
T ss_pred HHHHHHHHHhcCCeEEEEEEEcCCC----CccceEEEEEECCHHHHHHHHH---------------hcCCcEECCEEEEE
Confidence 5788888999999999999865442 1234568999999999999999 99999999999999
Q ss_pred EEec
Q psy2134 90 ELYD 93 (104)
Q Consensus 90 ~~yd 93 (104)
.+-.
T Consensus 261 ~~a~ 264 (457)
T TIGR01622 261 GYAQ 264 (457)
T ss_pred EEcc
Confidence 9843
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.87 E-value=6.4e-05 Score=62.78 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=47.6
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--eEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--RMV 87 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R~V 87 (104)
.+++++-+++||.|.+|+|+.... .+..||+|.+.++|.+|+. .|||..+.| +.+
T Consensus 110 ~~~L~~~F~~~G~V~~v~i~~~~~--------~~~afVef~~~~~A~~A~~---------------~Lng~~i~~~~~~l 166 (481)
T TIGR01649 110 LDVLYQIFNPYGKVLRIVTFTKNN--------VFQALVEFESVNSAQHAKA---------------ALNGADIYNGCCTL 166 (481)
T ss_pred HHHHHHHHhccCCEEEEEEEecCC--------ceEEEEEECCHHHHHHHHH---------------HhcCCcccCCceEE
Confidence 467888899999999999986432 2468999999999999999 777777643 466
Q ss_pred EEEEe
Q psy2134 88 RAELY 92 (104)
Q Consensus 88 ~a~~y 92 (104)
+..|-
T Consensus 167 ~v~~s 171 (481)
T TIGR01649 167 KIEYA 171 (481)
T ss_pred EEEEe
Confidence 66653
No 24
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.86 E-value=7.9e-05 Score=62.22 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=53.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+++++-++.||.|.+|+|...+. +-.||+|.+.++|..|+. .|||..+.|+.+
T Consensus 288 vt~~~L~~lF~~yG~V~~vki~~~~~---------g~afV~f~~~~~A~~Ai~---------------~lng~~l~g~~l 343 (481)
T TIGR01649 288 VNCDRLFNLFCVYGNVERVKFMKNKK---------ETALIEMADPYQAQLALT---------------HLNGVKLFGKPL 343 (481)
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCC---------CEEEEEECCHHHHHHHHH---------------HhCCCEECCceE
Confidence 34578888899999999999987532 358999999999999999 999999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
...+-.
T Consensus 344 ~v~~s~ 349 (481)
T TIGR01649 344 RVCPSK 349 (481)
T ss_pred EEEEcc
Confidence 998753
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.85 E-value=6.8e-05 Score=61.37 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=53.0
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++||+|++|.|..+..+. .-.+-.||+|.+.++|.+|+. .|||..+.++.|.
T Consensus 120 te~~L~~lF~~~G~V~~v~i~~d~~tg----~srGyaFVeF~~~e~A~~Ai~---------------~LnG~~l~gr~i~ 180 (346)
T TIGR01659 120 TDRELYALFRTIGPINTCRIMRDYKTG----YSFGYAFVDFGSEADSQRAIK---------------NLNGITVRNKRLK 180 (346)
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCC----ccCcEEEEEEccHHHHHHHHH---------------HcCCCccCCceee
Confidence 367888889999999999997765421 123458999999999999999 8899999999998
Q ss_pred EEEe
Q psy2134 89 AELY 92 (104)
Q Consensus 89 a~~y 92 (104)
..+-
T Consensus 181 V~~a 184 (346)
T TIGR01659 181 VSYA 184 (346)
T ss_pred eecc
Confidence 8754
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.83 E-value=7.4e-05 Score=65.43 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=51.4
Q ss_pred hhHHHHHhhhC--CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 10 YNEKQSDDEAY--GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 10 ~~ev~~Ec~ky--G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
++++++.+++| |.|++|.+... -.||+|.+.++|.+|+. .|||..|.|+.|
T Consensus 247 ee~L~~~F~~f~~G~I~rV~~~rg------------fAFVeF~s~e~A~kAi~---------------~lnG~~i~Gr~I 299 (578)
T TIGR01648 247 EEIIEKSFSEFKPGKVERVKKIRD------------YAFVHFEDREDAVKAMD---------------ELNGKELEGSEI 299 (578)
T ss_pred HHHHHHHHHhcCCCceEEEEeecC------------eEEEEeCCHHHHHHHHH---------------HhCCCEECCEEE
Confidence 57899999999 99999877542 47999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
++.+-..
T Consensus 300 ~V~~Akp 306 (578)
T TIGR01648 300 EVTLAKP 306 (578)
T ss_pred EEEEccC
Confidence 9997754
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.79 E-value=0.00016 Score=59.18 Aligned_cols=67 Identities=25% Similarity=0.270 Sum_probs=51.6
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--eE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--RM 86 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R~ 86 (104)
=++|+++-+++||.|++|.|...+... .-.+..||+|.+.++|++|+. .|||..+.| +.
T Consensus 206 tee~L~~~F~~fG~V~~v~i~~d~~tg----~~kG~aFV~F~~~e~A~~Ai~---------------~lng~~~~g~~~~ 266 (346)
T TIGR01659 206 TDDQLDTIFGKYGQIVQKNILRDKLTG----TPRGVAFVRFNKREEAQEAIS---------------ALNNVIPEGGSQP 266 (346)
T ss_pred cHHHHHHHHHhcCCEEEEEEeecCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCccCCCcee
Confidence 367899999999999999998765321 123578999999999999999 777776655 56
Q ss_pred EEEEEecc
Q psy2134 87 VRAELYDQ 94 (104)
Q Consensus 87 V~a~~yd~ 94 (104)
+.+.+-.+
T Consensus 267 l~V~~a~~ 274 (346)
T TIGR01659 267 LTVRLAEE 274 (346)
T ss_pred EEEEECCc
Confidence 77665543
No 28
>KOG0124|consensus
Probab=97.79 E-value=4.6e-06 Score=71.52 Aligned_cols=69 Identities=38% Similarity=0.584 Sum_probs=59.7
Q ss_pred CCceehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc
Q psy2134 1 YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR 80 (104)
Q Consensus 1 ~g~verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR 80 (104)
||.|.||+|++|.+.|-+.-..|+| ||++... =+....|+.|++ ||||+ ||
T Consensus 475 fG~V~rViI~nekq~e~edaeiiVK--IFVefS~--------------~~e~~rak~ALd---GRfFg----------Gr 525 (544)
T KOG0124|consen 475 FGAVNRVIIYNEKQGEEEDAEIIVK--IFVEFSI--------------ASETHRAKQALD---GRFFG----------GR 525 (544)
T ss_pred ccceeEEEEEecccccccchhhhhe--eeeeech--------------hhHHHHHHHhhc---cceec----------Cc
Confidence 8999999999999999888777755 7776542 235688999999 99999 99
Q ss_pred eeCCeEEEEEEecccccc
Q psy2134 81 FFAGRMVRAELYDQSLFD 98 (104)
Q Consensus 81 ~F~GR~V~a~~yd~~~f~ 98 (104)
....+.++.+.||.++++
T Consensus 526 ~VvAE~YDQ~~FD~~Dls 543 (544)
T KOG0124|consen 526 KVVAEVYDQERFDNSDLS 543 (544)
T ss_pred eeehhhhhhhcccccccC
Confidence 999999999999999875
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.79 E-value=0.00014 Score=60.89 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=54.3
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++++.+-+++||.|.+|.|..+..+. ...+-.||.|.+.++|++|+. .||+..+.|+.|+
T Consensus 13 te~~L~~~F~~~G~v~~v~v~~d~~t~----~s~G~afV~F~~~~~A~~Al~---------------~ln~~~i~gk~i~ 73 (562)
T TIGR01628 13 TEAKLYDLFKPFGPVLSVRVCRDSVTR----RSLGYGYVNFQNPADAERALE---------------TMNFKRLGGKPIR 73 (562)
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHH---------------HhCCCEECCeeEE
Confidence 367888889999999999998865431 124578999999999999999 8999999999999
Q ss_pred EEEe
Q psy2134 89 AELY 92 (104)
Q Consensus 89 a~~y 92 (104)
..+.
T Consensus 74 i~~s 77 (562)
T TIGR01628 74 IMWS 77 (562)
T ss_pred eecc
Confidence 8654
No 30
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.69 E-value=0.00022 Score=57.46 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=52.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-.+.||.|++|.|+.+..+ -+--||.|.+.++|..|+. |||..+.||.|
T Consensus 16 tTE~dLrefFS~~G~I~~V~I~~d~~~-------~GfAFVtF~d~eaAe~All----------------LnG~~l~gr~V 72 (260)
T PLN03120 16 ATERDIKEFFSFSGDIEYVEMQSENER-------SQIAYVTFKDPQGAETALL----------------LSGATIVDQSV 72 (260)
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCC-------CCEEEEEeCcHHHHHHHHH----------------hcCCeeCCceE
Confidence 457899999999999999999876432 2468999999999999997 78888999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
....-+
T Consensus 73 ~Vt~a~ 78 (260)
T PLN03120 73 TITPAE 78 (260)
T ss_pred EEEecc
Confidence 988764
No 31
>KOG4207|consensus
Probab=97.68 E-value=6.6e-05 Score=60.25 Aligned_cols=65 Identities=28% Similarity=0.398 Sum_probs=54.1
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
+--+++.--.+|||.|..|.|+.+.-.. +--+-.||.|.+-.+|+.|++ +|+|+..+||-+
T Consensus 25 Tspd~LrrvFekYG~vgDVyIPrdr~Tr----~sRgFaFVrf~~k~daedA~d---------------amDG~~ldgRel 85 (256)
T KOG4207|consen 25 TSPDDLRRVFEKYGRVGDVYIPRDRYTR----QSRGFAFVRFHDKRDAEDALD---------------AMDGAVLDGREL 85 (256)
T ss_pred CCHHHHHHHHHHhCcccceecccccccc----cccceeEEEeeecchHHHHHH---------------hhcceeecccee
Confidence 3346778888999999999999876542 234678999999999999999 999999999999
Q ss_pred EEEE
Q psy2134 88 RAEL 91 (104)
Q Consensus 88 ~a~~ 91 (104)
.+++
T Consensus 86 rVq~ 89 (256)
T KOG4207|consen 86 RVQM 89 (256)
T ss_pred eehh
Confidence 6654
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=97.58 E-value=0.00024 Score=62.79 Aligned_cols=65 Identities=14% Similarity=0.280 Sum_probs=53.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++++++.+++||.|.+|.|..++.+. ...+-.||+|.+.++|.+|+. .|||..+.||.|
T Consensus 119 ~tEe~Lr~lF~~fG~I~sV~I~~D~~Tg----kskGfAFVeF~s~e~A~~Ai~---------------~lnG~~i~GR~I 179 (612)
T TIGR01645 119 LREDTIRRAFDPFGPIKSINMSWDPATG----KHKGFAFVEYEVPEAAQLALE---------------QMNGQMLGGRNI 179 (612)
T ss_pred CCHHHHHHHHHccCCEEEEEEeecCCCC----CcCCeEEEEeCcHHHHHHHHH---------------hcCCeEEeccee
Confidence 4467889899999999999997654321 234568999999999999999 899999999998
Q ss_pred EEEE
Q psy2134 88 RAEL 91 (104)
Q Consensus 88 ~a~~ 91 (104)
+...
T Consensus 180 kV~r 183 (612)
T TIGR01645 180 KVGR 183 (612)
T ss_pred eecc
Confidence 8763
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.58 E-value=0.00053 Score=56.09 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=52.7
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
.+++++-+++||.|..+.|....... ...+-.||+|.+.++|..|+. .|||..+.|+.|.+
T Consensus 309 ~~~l~~~f~~~G~i~~~~~~~~~~~g----~~~g~afv~f~~~~~a~~A~~---------------~l~g~~~~~~~l~v 369 (509)
T TIGR01642 309 EDQIKELLESFGDLKAFNLIKDIATG----LSKGYAFCEYKDPSVTDVAIA---------------ALNGKDTGDNKLHV 369 (509)
T ss_pred HHHHHHHHHhcCCeeEEEEEecCCCC----CcCeEEEEEECCHHHHHHHHH---------------HcCCCEECCeEEEE
Confidence 56788889999999999887654321 124568999999999999999 99999999999988
Q ss_pred EEe
Q psy2134 90 ELY 92 (104)
Q Consensus 90 ~~y 92 (104)
.+-
T Consensus 370 ~~a 372 (509)
T TIGR01642 370 QRA 372 (509)
T ss_pred EEC
Confidence 764
No 34
>KOG0125|consensus
Probab=97.56 E-value=0.00022 Score=60.00 Aligned_cols=61 Identities=28% Similarity=0.380 Sum_probs=50.1
Q ss_pred hHHHHHhhhCCceeEEEE-ecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 11 NEKQSDDEAYGQVEKVVI-YNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I-~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
.|++.=.+|||+|..|.| +++..|. |-=||.|+++++|.+|+. .|||-.+-||+|.+
T Consensus 111 pDL~aMF~kfG~VldVEIIfNERGSK-------GFGFVTmen~~dadRARa---------------~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 111 PDLRAMFEKFGKVLDVEIIFNERGSK-------GFGFVTMENPADADRARA---------------ELHGTVVEGRKIEV 168 (376)
T ss_pred ccHHHHHHhhCceeeEEEEeccCCCC-------ccceEEecChhhHHHHHH---------------HhhcceeeceEEEE
Confidence 467777899999999988 5555443 234999999999999999 99999999999987
Q ss_pred EEec
Q psy2134 90 ELYD 93 (104)
Q Consensus 90 ~~yd 93 (104)
..-.
T Consensus 169 n~AT 172 (376)
T KOG0125|consen 169 NNAT 172 (376)
T ss_pred eccc
Confidence 6543
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.47 E-value=0.00093 Score=46.39 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=55.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++...+||.|..|.|...... ..--+..||.|.+.++|..|+. .|||-.|.||.+
T Consensus 127 ~~~~~l~~~F~~~g~~~~~~~~~d~~~----~~~~g~~~v~f~~~~~~~~a~~---------------~~~~~~~~~~~~ 187 (306)
T COG0724 127 VTEEDLRELFKKFGPVKRVRLVRDRET----GKSRGFAFVEFESEESAEKAIE---------------ELNGKELEGRPL 187 (306)
T ss_pred CCHHHHHHHHHhcCceeEEEeeecccc----CccCceEEEEecCHHHHHHHHH---------------HcCCCeECCcee
Confidence 457889999999999999988876521 1224568999999999999999 999999999999
Q ss_pred EEEEe
Q psy2134 88 RAELY 92 (104)
Q Consensus 88 ~a~~y 92 (104)
....-
T Consensus 188 ~v~~~ 192 (306)
T COG0724 188 RVQKA 192 (306)
T ss_pred Eeecc
Confidence 98874
No 36
>KOG0114|consensus
Probab=97.39 E-value=0.00071 Score=49.55 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=54.8
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
.+|+-+=..+||+|..|.|=+++.. .|..||-++++.+|.+|++ .|+|=.+.+|-+.+
T Consensus 32 seemydlFGkyg~IrQIRiG~~k~T-------rGTAFVVYedi~dAk~A~d---------------hlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 32 SEEMYDLFGKYGTIRQIRIGNTKET-------RGTAFVVYEDIFDAKKACD---------------HLSGYNVDNRYLVV 89 (124)
T ss_pred HHHHHHHhhcccceEEEEecCccCc-------CceEEEEehHhhhHHHHHH---------------HhcccccCCceEEE
Confidence 4555555789999999999887664 3578999999999999999 99999999999999
Q ss_pred EEeccc
Q psy2134 90 ELYDQS 95 (104)
Q Consensus 90 ~~yd~~ 95 (104)
.||...
T Consensus 90 lyyq~~ 95 (124)
T KOG0114|consen 90 LYYQPE 95 (124)
T ss_pred EecCHH
Confidence 999764
No 37
>KOG0148|consensus
Probab=97.32 E-value=0.00084 Score=55.54 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=53.5
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-+++++.-.+.||+|..|.||.++ +-.||+|++-+.|.+|+. .+||-..+|..|
T Consensus 176 lte~~mr~~Fs~fG~I~EVRvFk~q----------GYaFVrF~tkEaAahAIv---------------~mNntei~G~~V 230 (321)
T KOG0148|consen 176 LTEDLMRQTFSPFGPIQEVRVFKDQ----------GYAFVRFETKEAAAHAIV---------------QMNNTEIGGQLV 230 (321)
T ss_pred ccHHHHHHhcccCCcceEEEEeccc----------ceEEEEecchhhHHHHHH---------------HhcCceeCceEE
Confidence 4467888889999999999999864 368999999999999999 999999999999
Q ss_pred EEEEe
Q psy2134 88 RAELY 92 (104)
Q Consensus 88 ~a~~y 92 (104)
+|..=
T Consensus 231 kCsWG 235 (321)
T KOG0148|consen 231 RCSWG 235 (321)
T ss_pred EEecc
Confidence 98743
No 38
>KOG0148|consensus
Probab=97.28 E-value=0.00061 Score=56.34 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=51.2
Q ss_pred hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
+++++-..+||.|...+|.++.+.. ...+--||+|-+.++|+.|++ .|||-|.++|.|+.-
T Consensus 77 e~lr~aF~pFGevS~akvirD~~T~----KsKGYgFVSf~~k~dAEnAI~---------------~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 77 EKLREAFAPFGEVSDAKVIRDMNTG----KSKGYGFVSFPNKEDAENAIQ---------------QMNGQWLGRRTIRTN 137 (321)
T ss_pred HHHHHHhccccccccceEeecccCC----cccceeEEeccchHHHHHHHH---------------HhCCeeeccceeecc
Confidence 4455556799999999998876532 345667999999999999999 999999999999975
Q ss_pred E
Q psy2134 91 L 91 (104)
Q Consensus 91 ~ 91 (104)
.
T Consensus 138 W 138 (321)
T KOG0148|consen 138 W 138 (321)
T ss_pred c
Confidence 3
No 39
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.15 E-value=0.0027 Score=50.97 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=54.2
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
..=++|+++-.+.||.|.+|.|..+... .+.-||+|.++++|..|+. |||-.+.++.
T Consensus 16 ~tTE~dLrefFS~~G~I~~V~I~~D~et-------~gfAfVtF~d~~aaetAll----------------LnGa~l~d~~ 72 (243)
T PLN03121 16 KATEKDVYDFFSHCGAIEHVEIIRSGEY-------ACTAYVTFKDAYALETAVL----------------LSGATIVDQR 72 (243)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEecCCCc-------ceEEEEEECCHHHHHHHHh----------------cCCCeeCCce
Confidence 3457889999999999999999876432 2468999999999999886 8999999999
Q ss_pred EEEEEec
Q psy2134 87 VRAELYD 93 (104)
Q Consensus 87 V~a~~yd 93 (104)
|...-+.
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 9998865
No 40
>KOG0108|consensus
Probab=97.13 E-value=0.0013 Score=56.21 Aligned_cols=71 Identities=21% Similarity=0.153 Sum_probs=58.0
Q ss_pred ehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC
Q psy2134 5 EKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG 84 (104)
Q Consensus 5 erv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G 84 (104)
-.-.-++++.+-|++.|.|..+++-.+..+.. -.|--|++|.++++|..|+. .|||+.|.|
T Consensus 27 p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~----~~G~~f~~~~~~~~~~~a~~---------------~lNg~~~~g 87 (435)
T KOG0108|consen 27 PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGK----PKGFGFCEFTDEETAERAIR---------------NLNGAEFNG 87 (435)
T ss_pred CCcccHHHHHHHHhccCccceeeecccccCCC----cCceeeEecCchhhHHHHHH---------------hcCCcccCC
Confidence 33456788999999999999988866655422 24567999999999999999 999999999
Q ss_pred eEEEEEEecc
Q psy2134 85 RMVRAELYDQ 94 (104)
Q Consensus 85 R~V~a~~yd~ 94 (104)
|.+++.|=..
T Consensus 88 r~l~v~~~~~ 97 (435)
T KOG0108|consen 88 RKLRVNYASN 97 (435)
T ss_pred ceEEeecccc
Confidence 9999886443
No 41
>KOG0127|consensus
Probab=97.03 E-value=0.0022 Score=57.22 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=52.6
Q ss_pred hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
.+++-=|++||.|..|+||..+.+. .-|-.||+|.+..+|..|+. .|||-.|+||.|-+.
T Consensus 132 ~dLk~vFs~~G~V~Ei~IP~k~dgk-----lcGFaFV~fk~~~dA~~Al~---------------~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 132 PDLKNVFSNFGKVVEIVIPRKKDGK-----LCGFAFVQFKEKKDAEKALE---------------FFNGNKIDGRPVAVD 191 (678)
T ss_pred HHHHHHHhhcceEEEEEcccCCCCC-----ccceEEEEEeeHHHHHHHHH---------------hccCceecCceeEEe
Confidence 4778889999999999999655432 23778999999999999999 999999999999887
Q ss_pred E
Q psy2134 91 L 91 (104)
Q Consensus 91 ~ 91 (104)
+
T Consensus 192 W 192 (678)
T KOG0127|consen 192 W 192 (678)
T ss_pred e
Confidence 5
No 42
>KOG0123|consensus
Probab=96.82 E-value=0.0055 Score=50.89 Aligned_cols=56 Identities=20% Similarity=0.385 Sum_probs=47.1
Q ss_pred hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEecc
Q psy2134 17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQ 94 (104)
Q Consensus 17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd~ 94 (104)
.+.||+|+++++-..+.. ..+. ||+|++.++|.+|+. .|||+.+.|..|-...+..
T Consensus 97 f~~~g~ilS~kv~~~~~g------~kg~-FV~f~~e~~a~~ai~---------------~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 97 FSEFGNILSCKVATDENG------SKGY-FVQFESEESAKKAIE---------------KLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred HHhhcCeeEEEEEEcCCC------ceee-EEEeCCHHHHHHHHH---------------HhcCcccCCCeeEEeeccc
Confidence 578999999999887664 4677 999999999999999 8888888888887766543
No 43
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.78 E-value=0.0037 Score=53.52 Aligned_cols=59 Identities=19% Similarity=0.463 Sum_probs=47.4
Q ss_pred hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEE
Q psy2134 17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAEL 91 (104)
Q Consensus 17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~ 91 (104)
.+.||.|.||+|-...++... ..+-+-|||.|++-++|.+|+. ..+|-..+||.++|.|
T Consensus 141 FGQyGkI~KIvvNkkt~s~ns-t~~h~gvYITy~~kedAarcIa---------------~vDgs~~DGr~lkatY 199 (480)
T COG5175 141 FGQYGKIKKIVVNKKTSSLNS-TASHAGVYITYSTKEDAARCIA---------------EVDGSLLDGRVLKATY 199 (480)
T ss_pred hhhccceeEEEeccccccccc-ccccceEEEEecchHHHHHHHH---------------HhccccccCceEeeec
Confidence 578999999888655443222 2233558999999999999999 9999999999999986
No 44
>KOG0144|consensus
Probab=96.67 E-value=0.0019 Score=56.11 Aligned_cols=59 Identities=27% Similarity=0.242 Sum_probs=46.9
Q ss_pred ceehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccch
Q psy2134 3 QVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRF 66 (104)
Q Consensus 3 ~verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~ 66 (104)
.+.+..-++||++=|++||.|+.+.|-+.... ---|.+||+|++-+.|..|+++|||-+
T Consensus 131 ~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~-----~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 131 MLSKQCTENEVREIFSRFGHIEDCYILRDPDG-----LSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred hccccccHHHHHHHHHhhCccchhhheecccc-----cccceeEEEEehHHHHHHHHHhhccce
Confidence 34455668899999999999999999875432 234679999999999999999666544
No 45
>KOG0113|consensus
Probab=96.61 E-value=0.01 Score=49.59 Aligned_cols=65 Identities=14% Similarity=0.287 Sum_probs=53.5
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
+-+.+++.|.++||+|.+|.|...+.+. .-.+-.||+|++..+...|.. ..+|-.++||.|
T Consensus 113 T~EskLrreF~~YG~IkrirlV~d~vTg----kskGYAFIeye~erdm~~AYK---------------~adG~~Idgrri 173 (335)
T KOG0113|consen 113 TSESKLRREFEKYGPIKRIRLVRDKVTG----KSKGYAFIEYEHERDMKAAYK---------------DADGIKIDGRRI 173 (335)
T ss_pred ccHHHHHHHHHhcCcceeEEEeeecccC----CccceEEEEeccHHHHHHHHH---------------hccCceecCcEE
Confidence 4467899999999999999887764431 234679999999999999999 888999999998
Q ss_pred EEEE
Q psy2134 88 RAEL 91 (104)
Q Consensus 88 ~a~~ 91 (104)
.+.+
T Consensus 174 ~VDv 177 (335)
T KOG0113|consen 174 LVDV 177 (335)
T ss_pred EEEe
Confidence 7654
No 46
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=96.60 E-value=0.0073 Score=53.17 Aligned_cols=55 Identities=20% Similarity=0.091 Sum_probs=42.8
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccch
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRF 66 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~ 66 (104)
..-++|+++-+++||+|.++.|..+... ...+-.||+|.+.++|.+|+..||+..
T Consensus 69 ~~tEd~L~~~F~~~G~I~~vrl~~D~sG-----~sRGfaFV~F~~~e~A~~Ai~~lng~~ 123 (578)
T TIGR01648 69 DLYEDELVPLFEKAGPIYELRLMMDFSG-----QNRGYAFVTFCGKEEAKEAVKLLNNYE 123 (578)
T ss_pred CCCHHHHHHHHHhhCCEEEEEEEECCCC-----CccceEEEEeCCHHHHHHHHHHcCCCe
Confidence 3457889999999999999999876321 123568999999999999999555443
No 47
>KOG0117|consensus
Probab=96.55 E-value=0.0069 Score=52.83 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=49.5
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
++-++.+.++||.|++|+.+++ -.||-|++-++|.+|++ .|||.-..|.+|.+
T Consensus 273 eE~lk~~F~~~G~veRVkk~rD------------YaFVHf~eR~davkAm~---------------~~ngkeldG~~iEv 325 (506)
T KOG0117|consen 273 EETLKKLFNEFGKVERVKKPRD------------YAFVHFAEREDAVKAMK---------------ETNGKELDGSPIEV 325 (506)
T ss_pred HHHHHHHHHhccceEEeecccc------------eeEEeecchHHHHHHHH---------------HhcCceecCceEEE
Confidence 3445566789999999999853 37999999999999999 99999999999999
Q ss_pred EEecc
Q psy2134 90 ELYDQ 94 (104)
Q Consensus 90 ~~yd~ 94 (104)
.+-.+
T Consensus 326 tLAKP 330 (506)
T KOG0117|consen 326 TLAKP 330 (506)
T ss_pred EecCC
Confidence 88543
No 48
>PLN03213 repressor of silencing 3; Provisional
Probab=96.15 E-value=0.021 Score=51.13 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=52.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCH--HHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKM--QEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~--~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
+-.+|++.=.+.||.|.+|.|++++. -+-.||+|... .++.+|+. .|||-.+.||
T Consensus 22 VTEDDLravFSeFGsVkdVEIpRETG--------RGFAFVEMssdddaEeeKAIS---------------aLNGAEWKGR 78 (759)
T PLN03213 22 VGRDDLLKIFSPMGTVDAVEFVRTKG--------RSFAYIDFSPSSTNSLTKLFS---------------TYNGCVWKGG 78 (759)
T ss_pred CCHHHHHHHHHhcCCeeEEEEecccC--------CceEEEEecCCcHHHHHHHHH---------------HhcCCeecCc
Confidence 44678888889999999999996543 56789999987 78999999 9999999999
Q ss_pred EEEEEEe
Q psy2134 86 MVRAELY 92 (104)
Q Consensus 86 ~V~a~~y 92 (104)
.++..--
T Consensus 79 ~LKVNKA 85 (759)
T PLN03213 79 RLRLEKA 85 (759)
T ss_pred eeEEeec
Confidence 9997643
No 49
>KOG0122|consensus
Probab=96.03 E-value=0.03 Score=45.76 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=50.5
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
++|+++=..+||.|.+|.|-.++... .-.|-.||.|.+-++|.+|++ .|||+-++.=.+++
T Consensus 203 E~dL~eLf~~fg~i~rvylardK~TG----~~kGFAFVtF~sRddA~rAI~---------------~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 203 EDDLEELFRPFGPITRVYLARDKETG----LSKGFAFVTFESRDDAARAIA---------------DLNGYGYDNLILRV 263 (270)
T ss_pred hhHHHHHhhccCccceeEEEEccccC----cccceEEEEEecHHHHHHHHH---------------HccCcccceEEEEE
Confidence 34454445699999999888877642 234678999999999999999 88888888877777
Q ss_pred EEec
Q psy2134 90 ELYD 93 (104)
Q Consensus 90 ~~yd 93 (104)
++-.
T Consensus 264 Ewsk 267 (270)
T KOG0122|consen 264 EWSK 267 (270)
T ss_pred EecC
Confidence 7543
No 50
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.03 E-value=0.056 Score=37.82 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=42.4
Q ss_pred ehhHHHHHhhhCCceeEEEEe-cCCC--CCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIY-NEKQ--SDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~-~~~~--~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
+.+.|-++.++||.|++..-. .... .+.+.+.+.--|.|+|++..+|.+|+. -||+.|+|.
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~----------------~NG~i~~g~ 81 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ----------------KNGTIFSGS 81 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT----------------TTTEEETTC
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH----------------hCCeEEcCc
Confidence 456788899999999775300 0000 000112233468999999999999998 689999886
Q ss_pred EEE-EEEe
Q psy2134 86 MVR-AELY 92 (104)
Q Consensus 86 ~V~-a~~y 92 (104)
.+. +.+.
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 444 4443
No 51
>KOG1456|consensus
Probab=95.89 E-value=0.012 Score=50.88 Aligned_cols=40 Identities=33% Similarity=0.501 Sum_probs=33.7
Q ss_pred HhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhcc
Q psy2134 16 DDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNG 64 (104)
Q Consensus 16 Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~ 64 (104)
=|.-.|+|.+|+|+... .+...|+|++++.|++|..+|||
T Consensus 142 Icnp~GkVlRIvIfkkn---------gVQAmVEFdsv~~AqrAk~alNG 181 (494)
T KOG1456|consen 142 ICNPQGKVLRIVIFKKN---------GVQAMVEFDSVEVAQRAKAALNG 181 (494)
T ss_pred hcCCCCceEEEEEEecc---------ceeeEEeechhHHHHHHHhhccc
Confidence 38999999999999752 25789999999999999994444
No 52
>KOG0105|consensus
Probab=95.88 E-value=0.019 Score=45.82 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=48.9
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
+.||+.=..|||.|..|.+-+++..+ .-.||+|+++.+|+.|+. .-||=-|+|-.+++
T Consensus 20 ekeieDlFyKyg~i~~ieLK~r~g~p-------pfafVeFEd~RDAeDAiy---------------gRdGYdydg~rLRV 77 (241)
T KOG0105|consen 20 EKEIEDLFYKYGRIREIELKNRPGPP-------PFAFVEFEDPRDAEDAIY---------------GRDGYDYDGCRLRV 77 (241)
T ss_pred hccHHHHHhhhcceEEEEeccCCCCC-------CeeEEEecCccchhhhhh---------------cccccccCcceEEE
Confidence 34666667899999998876655432 358999999999999999 55677799999999
Q ss_pred EEec
Q psy2134 90 ELYD 93 (104)
Q Consensus 90 ~~yd 93 (104)
+|=-
T Consensus 78 Efpr 81 (241)
T KOG0105|consen 78 EFPR 81 (241)
T ss_pred Eecc
Confidence 8743
No 53
>KOG0109|consensus
Probab=95.81 E-value=0.015 Score=48.66 Aligned_cols=56 Identities=27% Similarity=0.385 Sum_probs=49.6
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
-+|++.-.+|||+|+...|-+. -.||.|.-+++|..|+. .||||.|.|..+++
T Consensus 92 n~ElRa~fe~ygpviecdivkd------------y~fvh~d~~eda~~air---------------~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 92 NQELRAKFEKYGPVIECDIVKD------------YAFVHFDRAEDAVEAIR---------------GLDNTEFQGKRMHV 144 (346)
T ss_pred CHHHhhhhcccCCceeeeeecc------------eeEEEEeeccchHHHHh---------------cccccccccceeee
Confidence 4788888999999999888653 47999999999999999 99999999999998
Q ss_pred EEe
Q psy2134 90 ELY 92 (104)
Q Consensus 90 ~~y 92 (104)
.+-
T Consensus 145 q~s 147 (346)
T KOG0109|consen 145 QLS 147 (346)
T ss_pred eee
Confidence 865
No 54
>KOG4206|consensus
Probab=95.72 E-value=0.028 Score=44.72 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=44.8
Q ss_pred HhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134 16 DDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY 92 (104)
Q Consensus 16 Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y 92 (104)
=.+.||+|..|+.+...... |..||.|.+.+.|..|+. +|+|..|=|..++..|-
T Consensus 33 LFsqfG~ildI~a~kt~KmR-------GQA~VvFk~~~~As~A~r---------------~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 33 LFSQFGKILDISAFKTPKMR-------GQAFVVFKETEAASAALR---------------ALQGFPFYGKPMRIQYA 87 (221)
T ss_pred HHHhhCCeEEEEecCCCCcc-------CceEEEecChhHHHHHHH---------------HhcCCcccCchhheecc
Confidence 46789999999998776643 458999999999999999 77777777777776653
No 55
>KOG0144|consensus
Probab=95.46 E-value=0.034 Score=48.59 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=49.5
Q ss_pred CceehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhh
Q psy2134 2 GQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDAL 62 (104)
Q Consensus 2 g~verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~ 62 (104)
|+|-|.--+.|+++=.++||.|..|.|.+++... ...+..||+|.+.++|.+|++||
T Consensus 40 gqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~----~s~gcCFv~~~trk~a~~a~~Al 96 (510)
T KOG0144|consen 40 GQIPRTASEKDLRELFEKYGNVYEINLIKDKSTG----QSKGCCFVKYYTRKEADEAINAL 96 (510)
T ss_pred ccCCccccHHHHHHHHHHhCceeEEEeecccccC----cccceEEEEeccHHHHHHHHHHh
Confidence 6777888889999999999999999999987643 34678999999999999999955
No 56
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.01 E-value=0.068 Score=32.99 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=31.0
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHH
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYAR 59 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~ 59 (104)
..+++..-...+|.|+++.+....+ -+||+|.+..+|++|+
T Consensus 13 ~~~~vl~~F~~fGeI~~~~~~~~~~----------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 13 LAEEVLEHFASFGEIVDIYVPESTN----------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCCCc----------EEEEEECCHHHHHhhC
Confidence 3456666778899999866652222 4999999999999985
No 57
>KOG0145|consensus
Probab=94.97 E-value=0.094 Score=43.85 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=56.3
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
++|+++=.+..|.|+++++.+++... . ..+-=||-|.++++|++|++ .|||=..-...|+.
T Consensus 55 qdE~rSLF~SiGeiEScKLvRDKitG--q--SLGYGFVNYv~p~DAe~Ain---------------tlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 55 QDELRSLFGSIGEIESCKLVRDKITG--Q--SLGYGFVNYVRPKDAEKAIN---------------TLNGLRLQNKTIKV 115 (360)
T ss_pred HHHHHHHhhcccceeeeeeeeccccc--c--ccccceeeecChHHHHHHHh---------------hhcceeeccceEEE
Confidence 57888888899999999999987532 2 34556999999999999999 99999999999999
Q ss_pred EEeccc
Q psy2134 90 ELYDQS 95 (104)
Q Consensus 90 ~~yd~~ 95 (104)
+|--+|
T Consensus 116 SyARPS 121 (360)
T KOG0145|consen 116 SYARPS 121 (360)
T ss_pred EeccCC
Confidence 986554
No 58
>KOG4660|consensus
Probab=94.81 E-value=0.015 Score=51.39 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=41.0
Q ss_pred eehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhh
Q psy2134 4 VEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFA 68 (104)
Q Consensus 4 verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~ 68 (104)
|.+.+=++++..-.++||.|.. |-.... .++ -+||+|=|+.+|+.|+++||+|=++
T Consensus 83 l~~~Vsn~~L~~~f~~yGeir~--ir~t~~-----~~~--~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 83 LPRSVSNDTLLRIFGAYGEIRE--IRETPN-----KRG--IVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred cCCcCCHHHHHHHHHhhcchhh--hhcccc-----cCc--eEEEEEeehHhHHHHHHHHHHHHhh
Confidence 3455667888889999999988 433322 223 4899999999999999955555444
No 59
>KOG0110|consensus
Probab=94.66 E-value=0.17 Score=46.17 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=53.9
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
.++++....++|.|..+.|...+.+.. -....|-.||+|.++++|..|++ +|+|-..+|+.|.+
T Consensus 529 ~e~l~~~F~k~G~VlS~~I~kkkd~~~-k~lSmGfgFVEF~~~e~A~~a~k---------------~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 529 LEDLEDLFSKQGTVLSIEISKKKDPAN-KYLSMGFGFVEFAKPESAQAALK---------------ALQGTVLDGHKLEL 592 (725)
T ss_pred hhHHHHHHHhcCeEEEEEEeccccccc-cccccceeEEEecCHHHHHHHHH---------------HhcCceecCceEEE
Confidence 356677788999999998876544221 12234678999999999999999 99999999999999
Q ss_pred EEec
Q psy2134 90 ELYD 93 (104)
Q Consensus 90 ~~yd 93 (104)
.+-+
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 8765
No 60
>KOG2314|consensus
Probab=94.62 E-value=0.056 Score=48.67 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=42.4
Q ss_pred HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
+..=.+|+|+++++.+|.+..+ --.|-+|++|.++.+|..|++ .|||..++...
T Consensus 81 l~kvfsk~gk~vn~~~P~~e~g-----gtkG~lf~E~~~~~~A~~aVK---------------~l~G~~ldknH 134 (698)
T KOG2314|consen 81 LTKVFSKAGKIVNMYYPIDEEG-----GTKGYLFVEYASMRDAKKAVK---------------SLNGKRLDKNH 134 (698)
T ss_pred HHHHHHhhccccceeeccCccC-----CeeeEEEEEecChhhHHHHHH---------------hcccceecccc
Confidence 3445789999999888764432 146789999999999999999 88887777654
No 61
>KOG4208|consensus
Probab=94.62 E-value=0.076 Score=42.21 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=47.9
Q ss_pred CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEeccc
Q psy2134 21 GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQS 95 (104)
Q Consensus 21 G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd~~ 95 (104)
|.|.+++.-+.+.. .+ ..+-.||+|.+.+-|+-|.. .||+=.|.|+++.|++.+++
T Consensus 75 g~v~r~rlsRnkrT--GN--SKgYAFVEFEs~eVA~IaAE---------------TMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 75 GTVTRFRLSRNKRT--GN--SKGYAFVEFESEEVAKIAAE---------------TMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred CeeEEEEeeccccc--CC--cCceEEEEeccHHHHHHHHH---------------HhhhhhhhhheeeeEEeCch
Confidence 88888888666553 22 34568999999999999999 99999999999999999988
No 62
>KOG0123|consensus
Probab=94.46 E-value=0.13 Score=42.71 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=48.4
Q ss_pred hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
..+.+=.+.+|+|++|.|+++. + .++--||.|.++.+|++|++ .||.--+.|+.|+-.
T Consensus 13 ~~l~~~f~~~~~v~s~rvc~d~-t------slgy~yvnf~~~~da~~A~~---------------~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 13 AMLFDKFSPAGPVLSIRVCRDA-T------SLGYAYVNFQQPADAERALD---------------TMNFDVLKGKPIRIM 70 (369)
T ss_pred HHHHHHhcccCCceeEEEeecC-C------ccceEEEecCCHHHHHHHHH---------------HcCCcccCCcEEEee
Confidence 3444457899999999999976 3 46788999999999999999 888888888888854
No 63
>KOG0121|consensus
Probab=94.46 E-value=0.15 Score=38.63 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=49.1
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-++-|-+=.++.|.|.+|+.=.+.....+ -+-.||+|...++|..|++ -+||-..+.|.|+
T Consensus 49 tEEqiyELFs~cG~irriiMGLdr~kktp----CGFCFVeyy~~~dA~~Alr---------------yisgtrLddr~ir 109 (153)
T KOG0121|consen 49 TEEQIYELFSKCGDIRRIIMGLDRFKKTP----CGFCFVEYYSRDDAEDALR---------------YISGTRLDDRPIR 109 (153)
T ss_pred cHHHHHHHHHhccchheeEeccccCCcCc----cceEEEEEecchhHHHHHH---------------HhccCccccccee
Confidence 35666666899999999887555443332 3679999999999999999 7888888888887
Q ss_pred EE
Q psy2134 89 AE 90 (104)
Q Consensus 89 a~ 90 (104)
+.
T Consensus 110 ~D 111 (153)
T KOG0121|consen 110 ID 111 (153)
T ss_pred ee
Confidence 65
No 64
>KOG0145|consensus
Probab=94.30 E-value=0.17 Score=42.33 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=48.5
Q ss_pred hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134 17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY 92 (104)
Q Consensus 17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y 92 (104)
.+-||.|.+|+|.++.... .-.+--||...+-++|..|+. .|||-..++|.++..|=
T Consensus 299 FgpFGAv~nVKvirD~ttn----kCKGfgFVtMtNYdEAamAi~---------------sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 299 FGPFGAVTNVKVIRDFTTN----KCKGFGFVTMTNYDEAAMAIA---------------SLNGYRLGDRVLQVSFK 355 (360)
T ss_pred hCcccceeeEEEEecCCcc----cccceeEEEecchHHHHHHHH---------------HhcCccccceEEEEEEe
Confidence 5679999999999876532 234567999999999999999 99999999999999874
No 65
>KOG4209|consensus
Probab=93.71 E-value=0.13 Score=40.53 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=57.1
Q ss_pred CCceehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc
Q psy2134 1 YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR 80 (104)
Q Consensus 1 ~g~verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR 80 (104)
||.|+....-++++.+.+.+|+|.+|.|+.++... ...+..||+|.+....+.|+. |||=
T Consensus 106 v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~----~~k~~~yvef~~~~~~~~ay~----------------l~gs 165 (231)
T KOG4209|consen 106 VGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRG----HPKGFAYVEFSSYELVEEAYK----------------LDGS 165 (231)
T ss_pred EeccccccccchhhheeeccCCccceeeeccccCC----CcceeEEEecccHhhhHHHhh----------------cCCc
Confidence 46777777777899999999999999998876542 235679999999999999998 6677
Q ss_pred eeCCeEEEEEEe
Q psy2134 81 FFAGRMVRAELY 92 (104)
Q Consensus 81 ~F~GR~V~a~~y 92 (104)
.+.|+.+....+
T Consensus 166 ~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 166 EIPGPAIEVTLK 177 (231)
T ss_pred ccccccceeeee
Confidence 777777776654
No 66
>KOG0117|consensus
Probab=92.30 E-value=0.65 Score=40.86 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=45.4
Q ss_pred eehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhcc
Q psy2134 4 VEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNG 64 (104)
Q Consensus 4 verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~ 64 (104)
+=|-..++|+.-=|+|-|+|-.+.+-.++-+. +.-+-.||.|.+-++|+.|++.||.
T Consensus 91 IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG----~nRGYAFVtf~~Ke~Aq~Aik~lnn 147 (506)
T KOG0117|consen 91 IPRDVFEDELVPLFEKIGKIYELRLMMDPFSG----DNRGYAFVTFCTKEEAQEAIKELNN 147 (506)
T ss_pred CCccccchhhHHHHHhccceeeEEEeecccCC----CCcceEEEEeecHHHHHHHHHHhhC
Confidence 34556678888889999999999998775432 3567899999999999999994443
No 67
>KOG0132|consensus
Probab=92.18 E-value=0.47 Score=44.13 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=54.1
Q ss_pred CceehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCce
Q psy2134 2 GQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRF 81 (104)
Q Consensus 2 g~verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~ 81 (104)
|.|.+..-++|+.+=.+.||.|++|.+-.+. +..||+.-.-++|.+|++ +|+.=.
T Consensus 427 G~i~k~v~e~dL~~~feefGeiqSi~li~~R----------~cAfI~M~~RqdA~kalq---------------kl~n~k 481 (894)
T KOG0132|consen 427 GGIPKNVTEQDLANLFEEFGEIQSIILIPPR----------GCAFIKMVRRQDAEKALQ---------------KLSNVK 481 (894)
T ss_pred ccccchhhHHHHHHHHHhcccceeEeeccCC----------ceeEEEEeehhHHHHHHH---------------HHhccc
Confidence 6788888999999999999999998775532 358999999999999999 888888
Q ss_pred eCCeEEEEE
Q psy2134 82 FAGRMVRAE 90 (104)
Q Consensus 82 F~GR~V~a~ 90 (104)
+++++|+..
T Consensus 482 v~~k~Iki~ 490 (894)
T KOG0132|consen 482 VADKTIKIA 490 (894)
T ss_pred ccceeeEEe
Confidence 888888643
No 68
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.56 E-value=1.5 Score=33.03 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=44.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.|..++-+....||.|+=|.+..+ +.+|.|.+-++|.+|+. |+|-.+.|+.+
T Consensus 48 ~l~~~ll~~~~~~GevvLvRfv~~------------~mwVTF~dg~sALaals----------------~dg~~v~g~~l 99 (146)
T PF08952_consen 48 NLMDELLQKFAQYGEVVLVRFVGD------------TMWVTFRDGQSALAALS----------------LDGIQVNGRTL 99 (146)
T ss_dssp HHHHHHHHHHHCCS-ECEEEEETT------------CEEEEESSCHHHHHHHH----------------GCCSEETTEEE
T ss_pred HHHHHHHHHHHhCCceEEEEEeCC------------eEEEEECccHHHHHHHc----------------cCCcEECCEEE
Confidence 355677778889999876544431 48999999999999987 89999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
+..+=+++
T Consensus 100 ~i~LKtpd 107 (146)
T PF08952_consen 100 KIRLKTPD 107 (146)
T ss_dssp EEEE----
T ss_pred EEEeCCcc
Confidence 98876543
No 69
>KOG0149|consensus
Probab=91.46 E-value=0.45 Score=38.59 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=37.3
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
.++++.=.+.||.|+..+|.-++... -+ .|-=||.|.+.++|.+|+.
T Consensus 26 ~~~l~~yFeqfGeI~eavvitd~~t~--rs--kGyGfVTf~d~~aa~rAc~ 72 (247)
T KOG0149|consen 26 KETLRRYFEQFGEIVEAVVITDKNTG--RS--KGYGFVTFRDAEAATRACK 72 (247)
T ss_pred hHHHHHHHHHhCceEEEEEEeccCCc--cc--cceeeEEeecHHHHHHHhc
Confidence 46777778999999998887776542 23 3456999999999999998
No 70
>KOG1190|consensus
Probab=91.32 E-value=0.54 Score=41.17 Aligned_cols=53 Identities=28% Similarity=0.448 Sum_probs=44.9
Q ss_pred hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEec
Q psy2134 17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYD 93 (104)
Q Consensus 17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd 93 (104)
.+-||.|.+|+|...+.. ..-|++++.+.|.-|.. .|+|-..=|+.++..+-.
T Consensus 319 FgvYGdVqRVkil~nkkd---------~ALIQmsd~~qAqLA~~---------------hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 319 FGVYGDVQRVKILYNKKD---------NALIQMSDGQQAQLAME---------------HLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred HhhhcceEEEEeeecCCc---------ceeeeecchhHHHHHHH---------------HhhcceecCceEEEeecc
Confidence 467999999999887662 36789999999999999 888988888999988753
No 71
>KOG0127|consensus
Probab=91.26 E-value=0.86 Score=41.22 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=39.0
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
-++|+.+..++||.|.-+.|...+.+. ...|..||.|.+..+|..|+.
T Consensus 305 tEEel~~~fskFG~v~ya~iV~~k~T~----~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 305 TEEELKEHFSKFGEVKYAIIVKDKDTG----HSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cHHHHHHHHHhhccceeEEEEeccCCC----CcccceEEEeccHHHHHHHHH
Confidence 367899999999999987776655432 235679999999999999999
No 72
>KOG0126|consensus
Probab=91.07 E-value=0.13 Score=40.85 Aligned_cols=55 Identities=22% Similarity=0.390 Sum_probs=47.8
Q ss_pred hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
.+.||.|+.|.+.+++... ...|-.|+.|++..+..-|++ .|||=.+.||+|+..
T Consensus 56 FSqyGe~vdinLiRDk~TG----KSKGFaFLcYEDQRSTILAVD---------------N~NGiki~gRtirVD 110 (219)
T KOG0126|consen 56 FSQYGEIVDINLIRDKKTG----KSKGFAFLCYEDQRSTILAVD---------------NLNGIKILGRTIRVD 110 (219)
T ss_pred eeccCceEEEEEEecCCCC----cccceEEEEecCccceEEEEe---------------ccCCceecceeEEee
Confidence 4789999999999887642 345679999999999999999 999999999999864
No 73
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=91.05 E-value=0.64 Score=32.25 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=26.5
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhh
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDAL 62 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~ 62 (104)
.+++++.++.||.|.=|.+-. |-..-||+|.+++.|+.|+.++
T Consensus 15 re~iK~~f~~~g~V~yVD~~~----------G~~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 15 REDIKEAFSQFGEVAYVDFSR----------GDTEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp HHHHHHHT-SS--EEEEE--T----------T-SEEEEEESS---HHHHHHHH
T ss_pred HHHHHHHHHhcCCcceEEecC----------CCCEEEEEECCcchHHHHHHHH
Confidence 789999999999886543322 2224799999999999999943
No 74
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.44 E-value=0.98 Score=34.75 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=41.1
Q ss_pred hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
..|-..-++||+|.+|..+-.. ..-|.|.++.+|.+|+. ++.-| -.|.+++|.
T Consensus 105 ~sV~~~Ls~fGpI~SVT~cGrq-----------savVvF~d~~SAC~Av~---------------Af~s~-~pgtm~qCs 157 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLCGRQ-----------SAVVVFKDITSACKAVS---------------AFQSR-APGTMFQCS 157 (166)
T ss_pred HHHHHHHHhcCCcceeeecCCc-----------eEEEEehhhHHHHHHHH---------------hhcCC-CCCceEEee
Confidence 4556678899999998876432 25689999999999999 77664 477888876
No 75
>KOG0131|consensus
Probab=90.24 E-value=0.55 Score=37.16 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=40.4
Q ss_pred hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
|-.-|+|+++.||.+.-.. .-.+--|++|.+.++|.+|++ .||+=..=||.|+..
T Consensus 30 ~iqagpVv~i~iPkDrv~~----~~qGygF~Ef~~eedadYAik---------------iln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 30 FIQAGPVVNLHIPKDRVTQ----KHQGYGFAEFRTEEDADYAIK---------------ILNMVKLYGRPIRVN 84 (203)
T ss_pred HHhcCceeeeecchhhhcc----cccceeEEEEechhhhHHHHH---------------HHHHHHhcCceeEEE
Confidence 5689999998888765432 234678999999999999999 555555555555543
No 76
>KOG0130|consensus
Probab=89.69 E-value=0.81 Score=35.13 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=44.9
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
++||+.-...||.|.++.+--+..+ -=..+-.-|+|.+.++|..|+. +|||--.-|..|.+
T Consensus 86 Eedi~d~F~dyGeiKNihLNLDRRt----Gy~KGYaLvEYet~keAq~A~~---------------~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 86 EEDIHDKFADYGEIKNIHLNLDRRT----GYVKGYALVEYETLKEAQAAID---------------ALNGAELLGQNVSV 146 (170)
T ss_pred HHHHHHHHhhcccccceeecccccc----ccccceeeeehHhHHHHHHHHH---------------hccchhhhCCceeE
Confidence 4556666678999999665433322 1134567799999999999999 77877777777766
Q ss_pred EE
Q psy2134 90 EL 91 (104)
Q Consensus 90 ~~ 91 (104)
.+
T Consensus 147 Dw 148 (170)
T KOG0130|consen 147 DW 148 (170)
T ss_pred EE
Confidence 54
No 77
>KOG0146|consensus
Probab=89.38 E-value=0.81 Score=38.53 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=39.7
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
-.=++|++.=..-||.+..+.+-+.... ...|..||+|++-.+|..|++
T Consensus 30 qq~e~dvrrlf~pfG~~~e~tvlrg~dg-----~sKGCAFVKf~s~~eAqaAI~ 78 (371)
T KOG0146|consen 30 QQSEDDVRRLFQPFGNIEECTVLRGPDG-----NSKGCAFVKFSSHAEAQAAIN 78 (371)
T ss_pred cccHHHHHHHhcccCCcceeEEecCCCC-----CCCCceEEEeccchHHHHHHH
Confidence 3446788877789999999999875432 345689999999999999999
No 78
>KOG4661|consensus
Probab=89.28 E-value=0.87 Score=41.80 Aligned_cols=62 Identities=23% Similarity=0.250 Sum_probs=47.3
Q ss_pred hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
-|++.=.+|||+|+--+|.....+++ .-.-=||.+++..+|.+|+. .|+---.-||||.++
T Consensus 420 tDLKnlFSKyGKVvGAKVVTNaRsPG----aRCYGfVTMSts~eAtkCI~---------------hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 420 TDLKNLFSKYGKVVGAKVVTNARSPG----ARCYGFVTMSTSAEATKCIE---------------HLHRTELHGRMISVE 480 (940)
T ss_pred hHHHHHHHHhcceeceeeeecCCCCC----cceeEEEEecchHHHHHHHH---------------Hhhhhhhcceeeeee
Confidence 35666689999999877766554433 22345899999999999999 888777888888776
Q ss_pred E
Q psy2134 91 L 91 (104)
Q Consensus 91 ~ 91 (104)
-
T Consensus 481 k 481 (940)
T KOG4661|consen 481 K 481 (940)
T ss_pred e
Confidence 4
No 79
>KOG4285|consensus
Probab=89.18 E-value=1.1 Score=37.86 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=39.2
Q ss_pred HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
|-.+.++||.|++++-....+ -++|+|+..-+|.+|+. -||+.|+|.++..
T Consensus 213 vL~~F~~cG~Vvkhv~~~ngN----------wMhirYssr~~A~KALs----------------kng~ii~g~vmiG 263 (350)
T KOG4285|consen 213 VLNLFSRCGEVVKHVTPSNGN----------WMHIRYSSRTHAQKALS----------------KNGTIIDGDVMIG 263 (350)
T ss_pred HHHHHHhhCeeeeeecCCCCc----------eEEEEecchhHHHHhhh----------------hcCeeeccceEEe
Confidence 456789999999965553222 48999999999999998 4688888876653
No 80
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.11 E-value=2.4 Score=32.44 Aligned_cols=63 Identities=21% Similarity=0.194 Sum_probs=43.5
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc--CceeCCe
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN--GRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln--GR~F~GR 85 (104)
++.+.+++=..+|+.+....+.... .+|-|.|.+.+.|..|+. .|+ |-.|.|.
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF----------rRi~v~f~~~~~A~~~r~---------------~l~~~~~~~~g~ 61 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF----------RRIRVVFESPESAQRARQ---------------LLHWDGTSFNGK 61 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT----------TEEEEE-SSTTHHHHHHH---------------TST--TSEETTE
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC----------CEEEEEeCCHHHHHHHHH---------------HhcccccccCCC
Confidence 3455666667789999887666544 389999999999999999 888 9999999
Q ss_pred EEEEEEeccc
Q psy2134 86 MVRAELYDQS 95 (104)
Q Consensus 86 ~V~a~~yd~~ 95 (104)
.++..|-...
T Consensus 62 ~l~~yf~~~~ 71 (184)
T PF04847_consen 62 RLRVYFGQPT 71 (184)
T ss_dssp E-EEE----S
T ss_pred ceEEEEcccc
Confidence 9888776443
No 81
>KOG0533|consensus
Probab=88.26 E-value=1.6 Score=35.05 Aligned_cols=62 Identities=27% Similarity=0.340 Sum_probs=47.6
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA 83 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~ 83 (104)
.++..|+++=.+.||.+.+|-|+....+. +.|. .=|.|..-++|..|+..+|| + .|+||...
T Consensus 94 ~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~---s~Gt--a~v~~~r~~DA~~avk~~~g--v--------~ldG~~mk 155 (243)
T KOG0533|consen 94 GVIDADLKELFAEFGELKRVAVHYDRAGR---SLGT--ADVSFNRRDDAERAVKKYNG--V--------ALDGRPMK 155 (243)
T ss_pred CcchHHHHHHHHHhccceEEeeccCCCCC---CCcc--ceeeecchHhHHHHHHHhcC--c--------ccCCceee
Confidence 46788999999999999999997765432 3344 44689999999999997777 5 67777633
No 82
>KOG0111|consensus
Probab=88.05 E-value=0.72 Score=37.90 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=49.5
Q ss_pred hCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEecccccc
Q psy2134 19 AYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLFD 98 (104)
Q Consensus 19 kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd~~~f~ 98 (104)
-||.|..|.||-+-.+ ..--+--||+|...++|..|++ .||+--.-||+|++.|--+..-.
T Consensus 33 PFGDI~dIqiPlDyes----qkHRgFgFVefe~aEDAaaAiD---------------NMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 33 PFGDIKDIQIPLDYES----QKHRGFGFVEFEEAEDAAAAID---------------NMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred cccchhhcccccchhc----ccccceeEEEeeccchhHHHhh---------------cCchhhhcceeEEEeecCCcccc
Confidence 5999999888765332 2234567999999999999999 99999999999999987665544
Q ss_pred c
Q psy2134 99 H 99 (104)
Q Consensus 99 ~ 99 (104)
.
T Consensus 94 e 94 (298)
T KOG0111|consen 94 E 94 (298)
T ss_pred C
Confidence 3
No 83
>KOG0106|consensus
Probab=86.96 E-value=0.63 Score=36.83 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=40.5
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
+.++..=..+||++..+.+-+ +-+||.|.+..+|..|+. .|||+-|.|..+..
T Consensus 15 ~~d~E~~f~~yg~~~d~~mk~------------gf~fv~fed~rda~Dav~---------------~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 15 ERDVERFFKGYGKIPDADMKN------------GFGFVEFEDPRDADDAVH---------------DLDGKELCGERLVV 67 (216)
T ss_pred hhHHHHHHhhccccccceeec------------ccceeccCchhhhhcccc---------------hhcCceecceeeee
Confidence 345544456899998754432 235999999999999999 88899888888554
Q ss_pred E
Q psy2134 90 E 90 (104)
Q Consensus 90 ~ 90 (104)
+
T Consensus 68 e 68 (216)
T KOG0106|consen 68 E 68 (216)
T ss_pred e
Confidence 4
No 84
>KOG4212|consensus
Probab=86.77 E-value=1.3 Score=39.48 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=41.5
Q ss_pred HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134 13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY 92 (104)
Q Consensus 13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y 92 (104)
++.-...||.|.-..|-.+.. +.+ -|+|.++++|++|+. .|||-...||.|++.|+
T Consensus 553 lrDKfre~G~v~yadime~Gk-----skG----VVrF~s~edAEra~a---------------~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 553 LRDKFREIGHVLYADIMENGK-----SKG----VVRFFSPEDAERACA---------------LMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HHHHHHhccceehhhhhccCC-----ccc----eEEecCHHHHHHHHH---------------HhccCcccCceeeeeeC
Confidence 344456678887666632222 223 479999999999999 99999999999998864
No 85
>KOG0415|consensus
Probab=84.48 E-value=2.1 Score=37.25 Aligned_cols=63 Identities=10% Similarity=0.262 Sum_probs=52.1
Q ss_pred hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
+|+.-=.+.||+|.++.|.+...+. +..--.||+|.+.+++++|.- .|..=.++.|.|.+.
T Consensus 254 eDLeiIFSrFG~i~sceVIRD~ktg----dsLqyaFiEFen~escE~AyF---------------KMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 254 EDLEIIFSRFGKIVSCEVIRDRKTG----DSLQYAFIEFENKESCEQAYF---------------KMDNVLIDDRRIHVD 314 (479)
T ss_pred cchhhHHhhcccceeeeEEeccccc----chhheeeeeecchhhHHHHHh---------------hhcceeeccceEEee
Confidence 4444457899999999998877643 245578999999999999988 999999999999988
Q ss_pred Ee
Q psy2134 91 LY 92 (104)
Q Consensus 91 ~y 92 (104)
|-
T Consensus 315 FS 316 (479)
T KOG0415|consen 315 FS 316 (479)
T ss_pred hh
Confidence 63
No 86
>KOG0147|consensus
Probab=83.34 E-value=3.6 Score=36.80 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=41.1
Q ss_pred HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134 13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY 92 (104)
Q Consensus 13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y 92 (104)
++.=.+-||.|+.|.++..... ..+ .+-=||+|.+.+.|.+|+. .|||=-.+||.|++...
T Consensus 295 lr~ifepfg~Ie~v~l~~d~~t--G~s--kgfGfi~f~~~~~ar~a~e---------------~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 295 LRGIFEPFGKIENVQLTKDSET--GRS--KGFGFITFVNKEDARKALE---------------QLNGFELAGRLIKVSVV 355 (549)
T ss_pred HhhhccCcccceeeeecccccc--ccc--cCcceEEEecHHHHHHHHH---------------HhccceecCceEEEEEe
Confidence 3334567999999877765421 122 3345899999999999999 55554456666665544
No 87
>KOG0146|consensus
Probab=82.10 E-value=1.9 Score=36.34 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=30.5
Q ss_pred hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
.--||.|++-+||++.-.. ....-=||+|+++.+|..|+.
T Consensus 306 F~PFGhivSaKVFvDRATN----QSKCFGFVSfDNp~SaQaAIq 345 (371)
T KOG0146|consen 306 FLPFGHIVSAKVFVDRATN----QSKCFGFVSFDNPASAQAAIQ 345 (371)
T ss_pred hccccceeeeeeeehhccc----cccceeeEecCCchhHHHHHH
Confidence 4469999999998865421 122345899999999999999
No 88
>KOG0110|consensus
Probab=81.80 E-value=1.8 Score=39.81 Aligned_cols=62 Identities=27% Similarity=0.231 Sum_probs=46.8
Q ss_pred hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
.||+.=...||+|..|.||..... ...-|.-||.|-++++|..|.+ +|.+--+=||.+.-+
T Consensus 628 rEVr~LF~aFGqlksvRlPKK~~k----~a~rGF~Fv~f~t~~ea~nA~~---------------al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 628 REVRKLFTAFGQLKSVRLPKKIGK----GAHRGFGFVDFLTPREAKNAFD---------------ALGSTHLYGRRLVLE 688 (725)
T ss_pred HHHHHHHhcccceeeeccchhhcc----hhhccceeeeccCcHHHHHHHH---------------hhcccceechhhhee
Confidence 466666789999999999986331 2345678999999999999999 666666666665555
Q ss_pred E
Q psy2134 91 L 91 (104)
Q Consensus 91 ~ 91 (104)
+
T Consensus 689 w 689 (725)
T KOG0110|consen 689 W 689 (725)
T ss_pred h
Confidence 3
No 89
>KOG1190|consensus
Probab=81.05 E-value=1.3 Score=38.76 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 15 SDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 15 ~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
.=.++||.|.|+.-|....+ . ..-|+|.++..|..|..
T Consensus 169 qvFS~fG~VlKIiTF~Knn~--F------QALvQy~d~~sAq~AK~ 206 (492)
T KOG1190|consen 169 QVFSKFGFVLKIITFTKNNG--F------QALVQYTDAVSAQAAKL 206 (492)
T ss_pred HHHhhcceeEEEEEEecccc--h------hhhhhccchhhHHHHHH
Confidence 34789999999888865442 2 35689999999999999
No 90
>KOG0153|consensus
Probab=80.95 E-value=7.4 Score=33.41 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=51.6
Q ss_pred eehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134 4 VEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA 83 (104)
Q Consensus 4 verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~ 83 (104)
+...++++||+.-.-+||.|..+.|..... -.||.|.+-.+|+.|.. ..+|-=.+.
T Consensus 236 l~d~v~e~dIrdhFyqyGeirsi~~~~~~~----------CAFv~ftTR~aAE~Aae--------------~~~n~lvI~ 291 (377)
T KOG0153|consen 236 LNDEVLEQDIRDHFYQYGEIRSIRILPRKG----------CAFVTFTTREAAEKAAE--------------KSFNKLVIN 291 (377)
T ss_pred cccchhHHHHHHHHhhcCCeeeEEeecccc----------cceeeehhhHHHHHHHH--------------hhcceeeec
Confidence 344678899999999999999998876432 58999999999999988 145544567
Q ss_pred CeEEEEEEeccc
Q psy2134 84 GRMVRAELYDQS 95 (104)
Q Consensus 84 GR~V~a~~yd~~ 95 (104)
|+.|... |...
T Consensus 292 G~Rl~i~-Wg~~ 302 (377)
T KOG0153|consen 292 GFRLKIK-WGRP 302 (377)
T ss_pred ceEEEEE-eCCC
Confidence 8777766 5444
No 91
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.41 E-value=3.4 Score=26.99 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=15.8
Q ss_pred EEEEeCCHHHHHHHHH
Q psy2134 45 IFVSFSKMQEAEYARD 60 (104)
Q Consensus 45 ifV~F~~~~~A~~A~~ 60 (104)
.||-|.+..+|++|..
T Consensus 36 fYIvF~~~~Ea~rC~~ 51 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFR 51 (66)
T ss_pred EEEEECChHHHHHHHH
Confidence 8999999999999999
No 92
>KOG0131|consensus
Probab=79.95 E-value=3.2 Score=32.94 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=40.5
Q ss_pred hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134 17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY 92 (104)
Q Consensus 17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y 92 (104)
.++||++.+ -|.....++ ....-+--||.|++-+.+.+|+. +|||-..+.|.|..++.
T Consensus 117 FsafG~l~~--~P~i~rd~~-tg~~~~~g~i~~~sfeasd~ai~---------------s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 117 FSAFGVLIS--PPKIMRDPD-TGNPKGFGFINYASFEASDAAIG---------------SMNGQYLCNRPITVSYA 174 (203)
T ss_pred HHhcccccc--CCccccccc-CCCCCCCeEEechhHHHHHHHHH---------------HhccchhcCCceEEEEE
Confidence 689999964 222111111 01223346899999999999999 99999999999998865
No 93
>KOG0109|consensus
Probab=79.52 E-value=5.1 Score=33.93 Aligned_cols=60 Identities=27% Similarity=0.230 Sum_probs=50.3
Q ss_pred ehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC
Q psy2134 5 EKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG 84 (104)
Q Consensus 5 erv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G 84 (104)
-+..=.+|+++=.++||+|+.+-|...- -||-.++-+.|+.|++ .|||=...|
T Consensus 11 p~~~~~~elr~lFe~ygkVlECDIvKNY------------gFVHiEdktaaedair---------------NLhgYtLhg 63 (346)
T KOG0109|consen 11 PREATEQELRSLFEQYGKVLECDIVKNY------------GFVHIEDKTAAEDAIR---------------NLHGYTLHG 63 (346)
T ss_pred CcccchHHHHHHHHhhCceEeeeeeccc------------ceEEeecccccHHHHh---------------hcccceecc
Confidence 3445578899999999999998886532 4899999999999999 999999999
Q ss_pred eEEEEEE
Q psy2134 85 RMVRAEL 91 (104)
Q Consensus 85 R~V~a~~ 91 (104)
-.|..+-
T Consensus 64 ~nInVea 70 (346)
T KOG0109|consen 64 VNINVEA 70 (346)
T ss_pred eEEEEEe
Confidence 9888764
No 94
>KOG0226|consensus
Probab=78.17 E-value=1.4 Score=36.44 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=28.1
Q ss_pred EEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 43 VKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 43 vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
+-=||+|.++.++..|.. .|||++.+-|.|.+
T Consensus 233 gygfVSf~~pad~~rAmr---------------em~gkyVgsrpikl 264 (290)
T KOG0226|consen 233 GYGFVSFRDPADYVRAMR---------------EMNGKYVGSRPIKL 264 (290)
T ss_pred cceeeeecCHHHHHHHHH---------------hhcccccccchhHh
Confidence 345999999999999999 99999999888764
No 95
>KOG4454|consensus
Probab=75.47 E-value=4.4 Score=33.19 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=34.5
Q ss_pred hHHHHHh-hhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhcc
Q psy2134 11 NEKQSDD-EAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNG 64 (104)
Q Consensus 11 ~ev~~Ec-~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~ 64 (104)
+|+-+|. -.-|+|.||.|+....+. - --+||.|.+.-+-..|.+++||
T Consensus 23 eelL~ElfiqaGPV~kv~ip~~~d~~-----~-kFa~v~f~~E~sv~~a~~L~ng 71 (267)
T KOG4454|consen 23 EELLSELFIQAGPVYKVGIPSGQDQE-----Q-KFAYVFFPNENSVQLAGQLENG 71 (267)
T ss_pred HHHHHHHhhccCceEEEeCCCCccCC-----C-ceeeeecccccchhhhhhhccc
Confidence 3444443 368999999998765532 1 1499999999999999994443
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=73.59 E-value=5.9 Score=27.89 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=27.4
Q ss_pred EEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEecc
Q psy2134 44 KIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQ 94 (104)
Q Consensus 44 kifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd~ 94 (104)
...|+|.+.+.|.+|+. -|+|--.=|+.|.+.|.+.
T Consensus 41 tAilrF~~~~~A~RA~K---------------RmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 41 TAILRFPNQEFAERAQK---------------RMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp -EEEEESSHHHHHHHHH---------------HHTT--SSSS--EEESS--
T ss_pred EEEEEeCCHHHHHHHHH---------------hhcccccccceEEEEEcCC
Confidence 36899999999999999 9999999999999998864
No 97
>KOG0106|consensus
Probab=70.86 E-value=3.3 Score=32.78 Aligned_cols=56 Identities=25% Similarity=0.346 Sum_probs=43.6
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
.+++..=...+|++..+.+ . ...-||+|++..+|.+|+. .|+|-.+.|+.|..
T Consensus 113 ~qdl~d~~~~~g~~~~~~~-~-----------~~~~~v~Fs~~~da~ra~~---------------~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 113 WQDLKDHFRPAGEVTYVDA-R-----------RNFAFVEFSEQEDAKRALE---------------KLDGKKLNGRRISV 165 (216)
T ss_pred HHHHhhhhcccCCCchhhh-h-----------ccccceeehhhhhhhhcch---------------hccchhhcCceeee
Confidence 3666666778999854433 1 1246899999999999999 99999999999988
Q ss_pred EEe
Q psy2134 90 ELY 92 (104)
Q Consensus 90 ~~y 92 (104)
...
T Consensus 166 ~~~ 168 (216)
T KOG0106|consen 166 EKN 168 (216)
T ss_pred ccc
Confidence 444
No 98
>KOG1457|consensus
Probab=69.30 E-value=5 Score=33.05 Aligned_cols=28 Identities=36% Similarity=0.332 Sum_probs=22.9
Q ss_pred EEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 43 VKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 43 vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
..-|+.|.+-++|..|.+ +|||=.|+-+
T Consensus 78 pvaFatF~s~q~A~aamn---------------aLNGvrFDpE 105 (284)
T KOG1457|consen 78 PVAFATFTSHQFALAAMN---------------ALNGVRFDPE 105 (284)
T ss_pred ceEEEEecchHHHHHHHH---------------HhcCeeeccc
Confidence 357999999999999999 7777776643
No 99
>KOG2068|consensus
Probab=69.26 E-value=2.1 Score=35.93 Aligned_cols=58 Identities=22% Similarity=0.472 Sum_probs=41.6
Q ss_pred hhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEE
Q psy2134 18 EAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAEL 91 (104)
Q Consensus 18 ~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~ 91 (104)
..||.|.+|.+........ .+.+-..+||.|...++|..|++ ..+|=..+||.+.|.+
T Consensus 102 gqygki~ki~~~~~~S~~s-~~~~~~s~yITy~~~eda~rci~---------------~v~g~~~dg~~lka~~ 159 (327)
T KOG2068|consen 102 GQYGKINKIVKNKDPSSSS-SSGGTCSVYITYEEEEDADRCID---------------DVDGFVDDGRALKASL 159 (327)
T ss_pred cccccceEEeecCCccccc-CCCCCCcccccccchHhhhhHHH---------------HhhhHHhhhhhhHHhh
Confidence 3688999998887552111 11233448999999999999999 7777777777766654
No 100
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=66.71 E-value=24 Score=24.97 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=28.1
Q ss_pred ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhh
Q psy2134 22 QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFA 68 (104)
Q Consensus 22 ~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~ 68 (104)
.|..+.|.+...+ ..=-|-++|.+.+.|..=....|||-|.
T Consensus 40 ~i~~~riird~~p------nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 40 DIEHIRIIRDGTP------NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred cEEEEEEeeCCCC------ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 5677778775432 2335778999999999999944444443
No 101
>KOG1995|consensus
Probab=51.97 E-value=8.6 Score=32.71 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=35.4
Q ss_pred EEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEE
Q psy2134 25 KVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAEL 91 (104)
Q Consensus 25 kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~ 91 (104)
+|.||.++... ...+..-|+|.++..|+.|+. .++||-|.|..|...+
T Consensus 103 ki~~y~dkeT~----~~KGeatvS~~D~~~akaai~---------------~~agkdf~gn~ikvs~ 150 (351)
T KOG1995|consen 103 KIKIYTDKETG----APKGEATVSYEDPPAAKAAIE---------------WFAGKDFCGNTIKVSL 150 (351)
T ss_pred chhcccccccc----CcCCceeeeecChhhhhhhhh---------------hhccccccCCCchhhh
Confidence 45566665432 234567789999999999999 7779999997776543
No 102
>KOG0151|consensus
Probab=48.89 E-value=33 Score=32.28 Aligned_cols=65 Identities=20% Similarity=0.149 Sum_probs=45.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.+++.+-...+.||+|..|+|..+..... -.-.--.-||.|-+-.+|++|+. .|+|+.+-++.+
T Consensus 186 v~E~~ll~tfGrfgPlasvKimwpRtEeE-k~r~r~cgfvafmnR~D~era~k---------------~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 186 VDENFLLRTFGRFGPLASVKIMWPRTEEE-KRRERNCGFVAFMNRADAERALK---------------ELQGIIVMEYEM 249 (877)
T ss_pred ccHHHHHHHhcccCcccceeeecccchhh-hccccccceeeehhhhhHHHHHH---------------Hhcceeeeeeee
Confidence 55667766778899999999977644211 11112235899999999999999 777776666555
Q ss_pred E
Q psy2134 88 R 88 (104)
Q Consensus 88 ~ 88 (104)
+
T Consensus 250 K 250 (877)
T KOG0151|consen 250 K 250 (877)
T ss_pred e
Confidence 4
No 103
>KOG0116|consensus
Probab=48.17 E-value=23 Score=30.59 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=36.8
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
..+++++...||.|.+.-|.+..... ... .--||+|.+..++..|+.
T Consensus 302 ~~~l~~~Fk~FG~Ik~~~I~vr~~~~---~~~-~fgFV~f~~~~~~~~~i~ 348 (419)
T KOG0116|consen 302 PAELEEVFKQFGPIKEGGIQVRSPGG---KNP-CFGFVEFENAAAVQNAIE 348 (419)
T ss_pred HHHHHHHHhhcccccccceEEeccCC---CcC-ceEEEEEeecchhhhhhh
Confidence 45788999999999999998865211 111 345999999999999998
No 104
>KOG1548|consensus
Probab=48.09 E-value=67 Score=27.78 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=46.1
Q ss_pred hhHHHHHhhhCCcee--------EEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCce
Q psy2134 10 YNEKQSDDEAYGQVE--------KVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRF 81 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~--------kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~ 81 (104)
.+|+.+..+|+|.|. +|++|++.++ .-.|---+.|.+.++-.-|++ .|++=-
T Consensus 148 ~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G-----~lKGDaLc~y~K~ESVeLA~~---------------ilDe~~ 207 (382)
T KOG1548|consen 148 VDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQG-----KLKGDALCCYIKRESVELAIK---------------ILDEDE 207 (382)
T ss_pred HHHHHHHHHhcceEeccCCCCCeeEEEEecCCC-----CccCceEEEeecccHHHHHHH---------------HhCccc
Confidence 467888999999886 4677776653 122334567888888899999 888888
Q ss_pred eCCeEEEEE
Q psy2134 82 FAGRMVRAE 90 (104)
Q Consensus 82 F~GR~V~a~ 90 (104)
|.|+.|+++
T Consensus 208 ~rg~~~rVe 216 (382)
T KOG1548|consen 208 LRGKKLRVE 216 (382)
T ss_pred ccCcEEEEe
Confidence 889999876
No 105
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=47.09 E-value=94 Score=21.52 Aligned_cols=51 Identities=16% Similarity=0.095 Sum_probs=35.0
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhc
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALN 63 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~ 63 (104)
..|.+++.+.|. |..-=+.+|.+... ..-.|-.||-|.+++.|.+-.++.|
T Consensus 16 ~~L~~~l~~~~~--g~yDF~YLPiDf~~----~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 16 EMLIQILDEHFK--GKYDFFYLPIDFKN----KCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred HHHHHHHHHhcc--CcceEEEeeeeccC----CCceEEEEEEcCCHHHHHHHHHHHc
Confidence 356677766653 55555555555432 2357899999999999999999333
No 106
>KOG4212|consensus
Probab=47.01 E-value=52 Score=29.68 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=38.2
Q ss_pred hhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 18 EAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 18 ~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
+|-|.|+=|.+..+.... .-+..-|+|.+++.+++|+. .||-=...||.+.+.
T Consensus 67 ekvGev~yveLl~D~~GK-----~rGcavVEFk~~E~~qKa~E---------------~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 67 EKVGEVEYVELLFDESGK-----ARGCAVVEFKDPENVQKALE---------------KLNKYEVNGRELVVK 119 (608)
T ss_pred HhcCceEeeeeecccCCC-----cCCceEEEeeCHHHHHHHHH---------------HhhhccccCceEEEe
Confidence 578889888887654321 23456789999999999999 666666666666553
No 107
>PRK13817 ribosome-binding factor A; Provisional
Probab=46.95 E-value=26 Score=24.86 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=21.0
Q ss_pred hCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhc
Q psy2134 19 AYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALN 63 (104)
Q Consensus 19 kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~ 63 (104)
+.-.|.+|.+-.+ -...+||+++-..++...++.+||
T Consensus 30 ~~vtVt~V~vS~D--------l~~AkVyvs~~~~~~~~~~~~~L~ 66 (119)
T PRK13817 30 SKISLTAVSISPD--------LKQAKVFYSLLENQNEKEVQKALN 66 (119)
T ss_pred CceEEeEEEECCC--------CCEEEEEEEECCCccHHHHHHHHH
Confidence 4456666665433 246789998854343444555444
No 108
>KOG4574|consensus
Probab=46.43 E-value=8.7 Score=36.48 Aligned_cols=35 Identities=29% Similarity=0.307 Sum_probs=27.4
Q ss_pred HhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 16 DDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 16 Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
=|++||.|....--++.. ..-|+|+..+.|..|++
T Consensus 318 l~s~yg~v~s~wtlr~~N----------~alvs~~s~~sai~a~d 352 (1007)
T KOG4574|consen 318 LCSDYGSVASAWTLRDLN----------MALVSFSSVESAILALD 352 (1007)
T ss_pred HHHhhcchhhheeccccc----------chhhhhHHHHHHHHhhh
Confidence 499999998855444433 25679999999999999
No 109
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=41.03 E-value=49 Score=23.14 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=19.9
Q ss_pred ceEEEEEEeCC-HHHHHHHHHhhccchhhhhhhhhhhhcCc
Q psy2134 41 VIVKIFVSFSK-MQEAEYARDALNGRFFAEAEYARDALNGR 80 (104)
Q Consensus 41 ~~vkifV~F~~-~~~A~~A~~~~~~r~f~~~~~~~~~LnGR 80 (104)
...+|||++-. .++...++.+||. .+.+.|..|..|
T Consensus 45 ~~AkVyvs~~~~~~~~~~~l~~L~~----~~g~iR~~l~k~ 81 (114)
T TIGR00082 45 QHAKVFVDCYGDEEAIDRVVKALNK----AKGFIRSLLGQA 81 (114)
T ss_pred CEEEEEEEECCChhhHHHHHHHHHH----HHHHHHHHHHhh
Confidence 46799999873 3333555555543 233444455444
No 110
>KOG4210|consensus
Probab=40.88 E-value=22 Score=28.70 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=46.6
Q ss_pred hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
+|++++-...|.|.+|.++...++.. +. +.-|+.|.....+..|+. . ..+..+|+.+...
T Consensus 200 d~~~~~~~~~~~i~~~r~~~~~~s~~--~k--g~a~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 200 DDLKEHFVSSGEITSVRLPTDEESGD--SK--GFAYVDFSAGNSKKLALN---------------D-QTRSIGGRPLRLE 259 (285)
T ss_pred HHHhhhccCcCcceeeccCCCCCccc--hh--hhhhhhhhhchhHHHHhh---------------c-ccCcccCcccccc
Confidence 45556677889999888776655432 22 345899999999999999 7 7888888877766
Q ss_pred Eecc
Q psy2134 91 LYDQ 94 (104)
Q Consensus 91 ~yd~ 94 (104)
+=+.
T Consensus 260 ~~~~ 263 (285)
T KOG4210|consen 260 EDEP 263 (285)
T ss_pred cCCC
Confidence 4433
No 111
>PF12007 DUF3501: Protein of unknown function (DUF3501); InterPro: IPR021890 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are about 200 amino acids in length. The structure of protein of unknown function (YP_111841.1) from B. pseudomallei has been solved. ; PDB: 3FJV_B.
Probab=39.39 E-value=31 Score=26.97 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=33.3
Q ss_pred eehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 4 VEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 4 verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
+||..=.++|++|-..|.+. ||..+ +...-.||++.+.++-...+.
T Consensus 60 iEri~~~~~I~~Ei~aYnpL----iP~~~-------~l~ATl~IE~~d~~~r~~~L~ 105 (192)
T PF12007_consen 60 IERIFDEEGIQEEIDAYNPL----IPDGG-------NLKATLMIEIPDEDERRRELA 105 (192)
T ss_dssp HHT--SHHHHHHHHHHHGGG----S--SS-------EEEEEEEE--SSHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHhccc----CCCCC-------cEEEEEEEEcCCHHHHHHHHH
Confidence 56777778899999999998 55432 356679999999999999999
No 112
>PRK13818 ribosome-binding factor A; Provisional
Probab=38.37 E-value=56 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=16.2
Q ss_pred hCCceeEEEEecCCCCCcccccceEEEEEEeCC
Q psy2134 19 AYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSK 51 (104)
Q Consensus 19 kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~ 51 (104)
+.-.|..|.+-.+- ...+|||++-.
T Consensus 30 ~~vtVt~V~lS~Dl--------~~AkVyvs~~~ 54 (121)
T PRK13818 30 SDVTITAVECTNDL--------SYATVYYSLLT 54 (121)
T ss_pred CceEEeEEEECCCC--------CEEEEEEEeCC
Confidence 45566666664432 36799999864
No 113
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=37.83 E-value=1.2e+02 Score=20.21 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCceeEEEEecCCCCCcccccceEEEEEEeC-CHHHHHHHHHhhcc
Q psy2134 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFS-KMQEAEYARDALNG 64 (104)
Q Consensus 20 yG~V~kV~I~~~~~~~~~~~~~~vkifV~F~-~~~~A~~A~~~~~~ 64 (104)
.=.|.+|.+-.+. ...+||+++- +..+-..++.+||.
T Consensus 28 ~vtIt~V~ls~Dl--------~~a~Vy~~~~~~~~~~~~~~~~L~~ 65 (104)
T PF02033_consen 28 LVTITRVELSPDL--------SHAKVYVSILGDEEEQEEVLEALNK 65 (104)
T ss_dssp CEEEEEEEECTTS--------SEEEEEEEESSSHHHHHHHHHHHHH
T ss_pred eEEEEEEEECCCC--------CEEEEEEEEecCchhHHHHHHHHHH
Confidence 3456665554332 3679999996 66666677776653
No 114
>KOG1996|consensus
Probab=37.56 E-value=7.8 Score=33.02 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=21.6
Q ss_pred EeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134 48 SFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY 92 (104)
Q Consensus 48 ~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y 92 (104)
.-...-.|.--++ ||||+ ||....--+..+=|
T Consensus 338 r~e~aiKA~Vdln---GRyFG----------Gr~v~A~Fyn~ekf 369 (378)
T KOG1996|consen 338 RVESAIKAVVDLN---GRYFG----------GRVVSACFYNLEKF 369 (378)
T ss_pred cHHHHHHHHHhcC---Cceec----------ceeeeheeccHHhh
Confidence 4445567777889 99998 88766555444433
No 115
>KOG4205|consensus
Probab=37.52 E-value=34 Score=28.30 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=38.3
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
-+-++.+++-++.||.|..++|-.+..+ ....+--||+|+++..-..++.
T Consensus 17 ~ttee~Lr~yf~~~Gev~d~~vm~d~~t----~rsrgFgfv~f~~~~~v~~vl~ 66 (311)
T KOG4205|consen 17 ETTEESLREYFSQFGEVTDCVVMRDPST----GRSRGFGFVTFATPEGVDAVLN 66 (311)
T ss_pred cccHHHHHHHhcccCceeeEEEeccCCC----CCcccccceecCCCcchheeec
Confidence 3456778888999999999999876654 2345667999998887776665
No 116
>KOG1456|consensus
Probab=37.23 E-value=1.3e+02 Score=26.59 Aligned_cols=52 Identities=25% Similarity=0.287 Sum_probs=40.5
Q ss_pred hCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEecc
Q psy2134 19 AYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQ 94 (104)
Q Consensus 19 kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd~ 94 (104)
-||.|++|+.-..++. -..|+..+..+-++|+. .||+=..-|-++...+-.|
T Consensus 311 lYGNV~rvkFmkTk~g---------tamVemgd~~aver~v~---------------hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 311 LYGNVERVKFMKTKPG---------TAMVEMGDAYAVERAVT---------------HLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred hcCceeeEEEeecccc---------eeEEEcCcHHHHHHHHH---------------HhccCccccceEEEeeccc
Confidence 4999999988877663 35789999999999999 8888766666666655444
No 117
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.49 E-value=57 Score=20.58 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=23.2
Q ss_pred EEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 44 KIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 44 kifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
+.++.|.+..+|.+|-+ .|...-+.+|.+
T Consensus 3 ~~~i~F~st~~a~~~ek---------------~lk~~gi~~~li 31 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEK---------------LLKKNGIPVRLI 31 (73)
T ss_pred eEEEEECCHHHHHHHHH---------------HHHHCCCcEEEe
Confidence 46899999999999999 666666666655
No 118
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=33.18 E-value=74 Score=22.65 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=18.6
Q ss_pred hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEe
Q psy2134 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSF 49 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F 49 (104)
.||+..--+.+.|++|.+-.+- ...+|||++
T Consensus 24 ~eikDprl~~~~Vt~V~vS~Dl--------~~A~Vyvt~ 54 (118)
T COG0858 24 REIKDPRLGLVTVTDVEVSKDL--------SHAKVYVTV 54 (118)
T ss_pred HHccCCCcCceEEEEEEEcCCC--------ceEEEEEEe
Confidence 3444333356667777664432 356899997
No 119
>KOG4019|consensus
Probab=32.28 E-value=72 Score=25.26 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=32.9
Q ss_pred ceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEecccc
Q psy2134 41 VIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSL 96 (104)
Q Consensus 41 ~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd~~~ 96 (104)
+..++=|.|+++..|..|+. .|+++.|.|...--.|+.+..
T Consensus 50 sfrrvRi~f~~p~~a~~a~i---------------~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARI---------------KLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred hhceeEEeccChhHHHHHHH---------------HhhhcccCCCceEEEEEccCC
Confidence 34678889999999999999 999999999955445555544
No 120
>KOG4205|consensus
Probab=32.24 E-value=68 Score=26.58 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=36.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
.-+.|.++..++||.|..+.|.-++.... +.+ -=||.|.+.+...+++.
T Consensus 109 ~~e~~~r~yfe~~g~v~~~~~~~d~~~~~--~rg--Fgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 109 TTEEDFKDYFEQFGKVADVVIMYDKTTSR--PRG--FGFVTFDSEDSVDKVTL 157 (311)
T ss_pred CchHHHhhhhhccceeEeeEEeecccccc--ccc--ceeeEeccccccceecc
Confidence 44678888899999999998877655321 223 35889998888888776
No 121
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=32.00 E-value=1.1e+02 Score=19.30 Aligned_cols=41 Identities=32% Similarity=0.556 Sum_probs=20.3
Q ss_pred ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 22 QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 22 ~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
.|-+|.|..... ||+-.. +.|..++. .|++..+.|+.+.++
T Consensus 32 ~IG~I~I~~~~S------------~vev~~-~~a~~v~~---------------~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 32 DIGRIDIFDNFS------------FVEVPE-EVAEKVLE---------------ALNGKKIKGKKVRVE 72 (74)
T ss_dssp GEEEEEE-SS-E------------EEEE-T-T-HHHHHH---------------HHTT--SSS----EE
T ss_pred hEEEEEEeeeEE------------EEEECH-HHHHHHHH---------------HhcCCCCCCeeEEEE
Confidence 456666765432 444432 46777788 888999999998876
No 122
>KOG2416|consensus
Probab=31.51 E-value=16 Score=33.66 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=28.3
Q ss_pred HHHHhh-hCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhcc
Q psy2134 13 KQSDDE-AYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNG 64 (104)
Q Consensus 13 v~~Ec~-kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~ 64 (104)
++++.. +-|.|+...|-.. ..++||.|++.++|..-+.||||
T Consensus 461 LkelL~rtgg~Vee~WmDkI----------KShCyV~yss~eEA~atr~Alhn 503 (718)
T KOG2416|consen 461 LKELLGRTGGNVEEFWMDKI----------KSHCYVSYSSVEEAAATREALHN 503 (718)
T ss_pred HHHHHhhccCchHHHHHHHh----------hcceeEecccHHHHHHHHHHHhc
Confidence 445555 5666666433222 23699999999999999994443
No 123
>KOG4211|consensus
Probab=30.52 E-value=1.9e+02 Score=26.01 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=29.6
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
++||++=.+ --.|+++++.+...-+ .+..||+|.+.++.++|++
T Consensus 24 ~~ei~~Ff~-~~~I~~~~~~r~~Gr~------sGeA~Ve~~seedv~~Alk 67 (510)
T KOG4211|consen 24 EKEILDFFS-NCGIENLEIPRRNGRP------SGEAYVEFTSEEDVEKALK 67 (510)
T ss_pred HHHHHHHHh-cCceeEEEEeccCCCc------CcceEEEeechHHHHHHHH
Confidence 345553222 3367888888762211 2348999999999999998
No 124
>KOG1457|consensus
Probab=28.74 E-value=1.1e+02 Score=25.43 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=33.5
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
++|++.=.+.|--...++|..... .-..|+.|++++.|..|..
T Consensus 224 ed~l~~~~~~~~gf~~l~~~~~~g--------~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 224 EDELKQLLSRYPGFHILKIRARGG--------MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred HHHHHHHHHhCCCceEEEEecCCC--------cceEeecHHHHHHHHHHHH
Confidence 566777778888777777876543 3468999999999999999
No 125
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=28.49 E-value=1e+02 Score=21.49 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=8.1
Q ss_pred ceEEEEEEeCC
Q psy2134 41 VIVKIFVSFSK 51 (104)
Q Consensus 41 ~~vkifV~F~~ 51 (104)
...+||+++-.
T Consensus 47 ~~AkVyvs~~~ 57 (120)
T PRK00521 47 AHAKVYVTVLG 57 (120)
T ss_pred CEEEEEEEECC
Confidence 45789999853
No 126
>KOG4211|consensus
Probab=28.32 E-value=72 Score=28.56 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=16.6
Q ss_pred EEEEEEeCCHHHHHHHHH
Q psy2134 43 VKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 43 vkifV~F~~~~~A~~A~~ 60 (104)
+-.||+|++++.|++|++
T Consensus 146 GEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 146 GEAFVQFESQESAEIALG 163 (510)
T ss_pred cceEEEecCHHHHHHHHH
Confidence 558999999999999998
No 127
>KOG4307|consensus
Probab=26.24 E-value=89 Score=29.70 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=30.2
Q ss_pred eEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134 42 IVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE 90 (104)
Q Consensus 42 ~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~ 90 (104)
.+..-|-|++.++|..|.. .|+||.+..|+|...
T Consensus 909 TGe~mvAfes~~eAr~A~~---------------dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 909 TGECMVAFESQEEARRASM---------------DLDGQKIRNRVVSLR 942 (944)
T ss_pred ccceeEeecCHHHHHhhhh---------------ccccCcccceeEEEE
Confidence 3557899999999999999 999999999999754
No 128
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=22.83 E-value=85 Score=20.29 Aligned_cols=17 Identities=29% Similarity=0.114 Sum_probs=14.6
Q ss_pred EEEEeCCHHHHHHHHHh
Q psy2134 45 IFVSFSKMQEAEYARDA 61 (104)
Q Consensus 45 ifV~F~~~~~A~~A~~~ 61 (104)
+=|-|.+...|.+|+.+
T Consensus 45 cNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 45 CNVVFKDEETAARALVA 61 (62)
T ss_pred EEEEECCHHHHHHHHHc
Confidence 45789999999999984
No 129
>KOG0804|consensus
Probab=22.55 E-value=1.2e+02 Score=27.00 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=30.6
Q ss_pred CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134 21 GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA 83 (104)
Q Consensus 21 G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~ 83 (104)
-+|..+.|-+.+. +---.|-++|.+..+|..-.. .+||+.|+
T Consensus 100 ~~I~~irivRd~~------pnrymvLIkFr~q~da~~Fy~---------------efNGk~Fn 141 (493)
T KOG0804|consen 100 KQISDIRIVRDGM------PNRYMVLIKFRDQADADTFYE---------------EFNGKQFN 141 (493)
T ss_pred hhhheeEEeecCC------CceEEEEEEeccchhHHHHHH---------------HcCCCcCC
Confidence 4677777877432 223468899999999998888 77777775
Done!