Query psy2134
Match_columns 104
No_of_seqs 112 out of 662
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 16:54:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ue2_A Poly(U)-binding-splicin 99.9 1.5E-22 5.1E-27 140.4 7.4 82 8-104 37-118 (118)
2 3v4m_A Splicing factor U2AF 65 99.8 3E-20 1E-24 125.3 6.8 79 7-102 26-104 (105)
3 3dxb_A Thioredoxin N-terminall 99.8 8.6E-20 2.9E-24 132.7 6.8 82 8-104 141-222 (222)
4 2pe8_A Splicing factor 45; RRM 99.8 2.5E-18 8.6E-23 116.1 8.8 79 8-104 25-103 (105)
5 3s6e_A RNA-binding protein 39; 99.7 7E-18 2.4E-22 116.4 5.3 71 6-99 27-97 (114)
6 1jmt_A Splicing factor U2AF 35 99.6 1.6E-14 5.5E-19 96.8 8.3 66 8-93 38-104 (104)
7 2dit_A HIV TAT specific factor 99.5 3.5E-13 1.2E-17 89.7 8.6 74 8-104 38-112 (112)
8 4fxv_A ELAV-like protein 1; RN 98.9 9.8E-09 3.4E-13 67.3 9.4 66 9-93 32-97 (99)
9 3s8s_A Histone-lysine N-methyl 98.9 1.1E-08 3.8E-13 68.5 9.2 67 8-93 18-84 (110)
10 2cqc_A Arginine/serine-rich sp 98.9 2E-08 6.8E-13 63.3 9.1 65 9-92 28-92 (95)
11 3md1_A Nuclear and cytoplasmic 98.9 2.9E-08 9.8E-13 61.1 9.2 68 8-94 13-80 (83)
12 3bs9_A Nucleolysin TIA-1 isofo 98.9 2.6E-08 8.9E-13 61.8 9.1 67 8-93 18-84 (87)
13 3mdf_A Peptidyl-prolyl CIS-tra 98.8 1.1E-08 3.9E-13 63.2 7.3 65 8-91 19-83 (85)
14 2e5h_A Zinc finger CCHC-type a 98.8 2E-08 7E-13 63.3 8.2 65 8-91 28-92 (94)
15 4a8x_A RNA-binding protein wit 98.8 2.2E-08 7.6E-13 62.1 7.5 69 8-94 16-84 (88)
16 3md3_A Nuclear and cytoplasmic 98.8 4E-08 1.4E-12 65.5 9.2 65 9-92 100-164 (166)
17 1whx_A Hypothetical protein ri 98.8 1.6E-08 5.3E-13 67.3 7.1 68 8-100 22-89 (111)
18 2ywk_A Putative RNA-binding pr 98.8 3.5E-08 1.2E-12 62.3 8.3 65 8-92 28-92 (95)
19 2krb_A Eukaryotic translation 98.8 6E-09 2E-13 64.9 4.7 59 9-88 20-79 (81)
20 3ns6_A Eukaryotic translation 98.8 9.5E-09 3.3E-13 66.9 5.3 69 7-94 23-92 (100)
21 2dgx_A KIAA0430 protein; RRM d 98.8 3.3E-08 1.1E-12 63.5 7.7 63 10-94 23-89 (96)
22 2dgo_A Cytotoxic granule-assoc 98.8 6.3E-08 2.1E-12 63.4 9.1 68 8-94 27-94 (115)
23 2cpi_A CCR4-NOT transcription 98.8 4.3E-08 1.5E-12 64.6 8.3 69 10-94 29-100 (111)
24 2cq0_A Eukaryotic translation 98.8 5.2E-08 1.8E-12 62.6 8.5 69 8-95 27-95 (103)
25 2qfj_A FBP-interacting repress 98.8 3.3E-08 1.1E-12 69.1 8.0 68 8-94 137-204 (216)
26 2cqi_A Nucleolysin TIAR; RNA r 98.8 1.1E-07 3.7E-12 61.1 9.7 68 8-96 27-94 (103)
27 2dnz_A Probable RNA-binding pr 98.7 3.8E-08 1.3E-12 62.1 7.4 68 8-94 17-84 (95)
28 1whw_A Hypothetical protein ri 98.7 5.9E-08 2E-12 61.8 8.4 69 8-95 20-88 (99)
29 3ulh_A THO complex subunit 4; 98.7 7.7E-08 2.6E-12 62.0 9.0 65 8-92 41-105 (107)
30 2nlw_A Eukaryotic translation 98.7 2.5E-08 8.5E-13 65.2 6.5 64 9-93 34-98 (105)
31 2g4b_A Splicing factor U2AF 65 98.7 5.6E-08 1.9E-12 65.7 8.5 64 9-91 107-170 (172)
32 2x1f_A MRNA 3'-END-processing 98.7 7.9E-08 2.7E-12 61.2 8.6 69 8-95 14-82 (96)
33 4f25_A Polyadenylate-binding p 98.7 7.3E-08 2.5E-12 64.0 8.7 65 9-94 18-82 (115)
34 2do4_A Squamous cell carcinoma 98.7 1E-07 3.5E-12 60.9 9.1 67 8-94 29-95 (100)
35 2cq3_A RNA-binding protein 9; 98.7 1.9E-07 6.4E-12 60.0 10.2 68 8-96 27-94 (103)
36 1p27_B RNA-binding protein 8A; 98.7 7.4E-08 2.5E-12 62.0 7.9 67 8-93 35-101 (106)
37 2cqb_A Peptidyl-prolyl CIS-tra 98.7 4.9E-08 1.7E-12 62.5 7.0 69 8-95 24-92 (102)
38 1x4a_A Splicing factor, argini 98.7 1.1E-07 3.9E-12 61.8 8.8 65 8-94 34-98 (109)
39 2do0_A HnRNP M, heterogeneous 98.7 1.5E-07 5.2E-12 61.2 9.4 67 8-94 27-93 (114)
40 3lqv_A PRE-mRNA branch site pr 98.7 7.3E-08 2.5E-12 63.0 7.6 65 8-94 20-84 (115)
41 2cpz_A CUG triplet repeat RNA- 98.7 9.5E-08 3.3E-12 62.6 8.2 69 8-95 37-105 (115)
42 1x5p_A Negative elongation fac 98.7 1.4E-07 4.8E-12 60.3 8.8 61 10-95 27-87 (97)
43 2e44_A Insulin-like growth fac 98.7 8.7E-08 3E-12 60.7 7.6 65 8-95 27-92 (96)
44 1x5s_A Cold-inducible RNA-bind 98.7 3.9E-08 1.3E-12 63.0 6.0 69 8-95 24-92 (102)
45 1fxl_A Paraneoplastic encephal 98.7 7.9E-08 2.7E-12 64.1 7.6 65 8-91 100-166 (167)
46 2khc_A Testis-specific RNP-typ 98.7 6.8E-08 2.3E-12 63.5 7.1 65 8-91 52-116 (118)
47 1p1t_A Cleavage stimulation fa 98.7 6.3E-08 2.1E-12 62.0 6.7 68 8-94 20-87 (104)
48 2dgv_A HnRNP M, heterogeneous 98.7 8.6E-08 2.9E-12 60.1 7.0 66 8-94 20-85 (92)
49 1x5t_A Splicing factor 3B subu 98.7 8.2E-08 2.8E-12 60.7 6.9 69 8-95 17-86 (96)
50 2d9p_A Polyadenylate-binding p 98.7 9.7E-08 3.3E-12 61.3 7.3 66 8-94 27-92 (103)
51 2cpf_A RNA binding motif prote 98.7 1.4E-07 4.7E-12 60.0 7.9 72 8-95 17-88 (98)
52 1b7f_A Protein (SXL-lethal pro 98.7 1E-07 3.5E-12 64.0 7.7 65 8-91 101-167 (168)
53 2ytc_A PRE-mRNA-splicing facto 98.7 1.3E-07 4.4E-12 58.6 7.6 59 8-91 24-83 (85)
54 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.6 1.2E-07 4E-12 63.3 7.8 65 8-91 75-139 (140)
55 1oo0_B CG8781-PA, drosophila Y 98.6 1.5E-07 5.3E-12 61.0 8.2 67 8-93 38-104 (110)
56 2dnm_A SRP46 splicing factor; 98.6 4.9E-08 1.7E-12 62.7 5.7 68 8-94 25-92 (103)
57 2dnp_A RNA-binding protein 14; 98.6 2.1E-07 7.2E-12 58.6 8.5 61 8-95 21-81 (90)
58 2la6_A RNA-binding protein FUS 98.6 1.1E-07 3.9E-12 60.8 7.4 65 8-91 25-97 (99)
59 1x5u_A Splicing factor 3B subu 98.6 8.8E-08 3E-12 61.6 6.8 68 8-94 27-94 (105)
60 2dgt_A RNA-binding protein 30; 98.6 2E-07 7E-12 58.9 8.3 61 8-95 22-82 (92)
61 1u6f_A Tcubp1, RNA-binding pro 98.6 1.4E-07 4.7E-12 63.5 7.9 69 8-95 54-122 (139)
62 2wbr_A GW182, gawky, LD47780P; 98.6 1E-07 3.4E-12 64.7 7.1 64 8-96 19-82 (89)
63 2cph_A RNA binding motif prote 98.6 1.3E-07 4.3E-12 60.8 7.3 69 8-95 27-97 (107)
64 3smz_A Protein raver-1, ribonu 98.6 1.4E-07 4.8E-12 69.4 8.4 68 9-96 198-265 (284)
65 2yh0_A Splicing factor U2AF 65 98.6 1.8E-07 6.3E-12 64.5 8.3 67 9-94 127-193 (198)
66 2ek1_A RNA-binding protein 12; 98.6 7E-08 2.4E-12 60.9 5.7 67 8-93 27-93 (95)
67 2err_A Ataxin-2-binding protei 98.6 9.3E-08 3.2E-12 63.0 6.5 66 8-94 41-106 (109)
68 2kt5_A RNA and export factor-b 98.6 1.8E-07 6.1E-12 62.2 7.9 67 8-94 47-113 (124)
69 3pgw_A U1-A; protein-RNA compl 98.6 1.6E-07 5.3E-12 69.1 8.3 61 8-92 219-280 (282)
70 3ex7_B RNA-binding protein 8A; 98.6 9.5E-08 3.3E-12 63.4 6.5 68 8-94 34-101 (126)
71 2jrs_A RNA-binding protein 39; 98.6 1.1E-07 3.8E-12 62.8 6.8 67 8-93 38-104 (108)
72 1h2v_Z 20 kDa nuclear CAP bind 98.6 2.9E-07 1E-11 63.3 9.1 68 8-94 51-118 (156)
73 4f02_A Polyadenylate-binding p 98.6 2.1E-07 7.3E-12 66.8 8.5 65 9-94 116-180 (213)
74 2fy1_A RNA-binding motif prote 98.6 2.4E-07 8.2E-12 61.9 8.1 70 8-97 19-88 (116)
75 1x4c_A Splicing factor, argini 98.6 2.5E-07 8.4E-12 60.5 7.9 61 8-94 27-92 (108)
76 3zzy_A Polypyrimidine tract-bi 98.6 2.5E-07 8.6E-12 65.5 8.5 64 9-95 41-106 (130)
77 2dnh_A Bruno-like 5, RNA bindi 98.6 2.7E-07 9.2E-12 59.3 7.9 68 8-95 27-97 (105)
78 2cpj_A Non-POU domain-containi 98.6 1.4E-07 4.8E-12 60.4 6.5 62 8-94 27-88 (99)
79 1x4g_A Nucleolysin TIAR; struc 98.6 2.5E-07 8.6E-12 60.3 7.7 61 9-94 38-98 (109)
80 1sjr_A Polypyrimidine tract-bi 98.6 1.5E-07 5.1E-12 69.2 7.3 65 8-95 58-124 (164)
81 2xnq_A Nuclear polyadenylated 98.6 2.9E-07 1E-11 59.6 7.8 59 8-93 35-93 (97)
82 1nu4_A U1A RNA binding domain; 98.6 1.1E-07 3.8E-12 60.2 5.6 63 10-94 22-88 (97)
83 3nmr_A Cugbp ELAV-like family 98.6 2.6E-07 9E-12 62.1 7.7 65 8-92 107-174 (175)
84 1why_A Hypothetical protein ri 98.6 2.3E-07 8E-12 59.1 7.1 62 8-94 29-92 (97)
85 3md3_A Nuclear and cytoplasmic 98.6 6.5E-07 2.2E-11 59.5 9.5 67 8-94 12-78 (166)
86 1x4h_A RNA-binding protein 28; 98.6 3E-07 1E-11 59.4 7.6 69 8-95 27-101 (111)
87 2cqd_A RNA-binding region cont 98.6 3.4E-07 1.2E-11 60.1 7.9 66 8-93 29-94 (116)
88 2a3j_A U1 small nuclear ribonu 98.6 1.4E-07 4.7E-12 65.4 6.3 64 9-94 46-109 (127)
89 3p5t_L Cleavage and polyadenyl 98.6 8.7E-08 3E-12 60.7 4.8 68 8-94 13-82 (90)
90 2dgu_A Heterogeneous nuclear r 98.5 4.8E-07 1.7E-11 58.4 8.4 61 8-95 23-83 (103)
91 2jvo_A Nucleolar protein 3; nu 98.5 2.1E-07 7.3E-12 61.6 6.7 60 8-94 43-102 (108)
92 2div_A TRNA selenocysteine ass 98.5 3.1E-07 1.1E-11 58.4 7.2 68 8-94 21-93 (99)
93 2kxn_B Transformer-2 protein h 98.5 1.9E-07 6.5E-12 63.9 6.6 68 8-94 58-125 (129)
94 1wex_A Hypothetical protein (r 98.5 3.6E-07 1.2E-11 61.1 7.7 66 8-98 27-94 (104)
95 2kn4_A Immunoglobulin G-bindin 98.5 3.2E-07 1.1E-11 62.8 7.6 69 8-95 82-150 (158)
96 2cqp_A RNA-binding protein 12; 98.5 1.7E-07 5.7E-12 59.6 5.6 66 8-92 27-92 (98)
97 2cpd_A Apobec-1 stimulating pr 98.5 5.6E-07 1.9E-11 57.5 8.0 61 8-95 27-89 (99)
98 2cpe_A RNA-binding protein EWS 98.5 2.7E-07 9.2E-12 60.1 6.5 68 8-94 27-102 (113)
99 1fxl_A Paraneoplastic encephal 98.5 1E-06 3.5E-11 58.7 9.4 67 9-94 15-81 (167)
100 2hvz_A Splicing factor, argini 98.5 1.1E-07 3.8E-12 60.9 4.6 63 8-94 12-74 (101)
101 2la4_A Nuclear and cytoplasmic 98.5 2.2E-07 7.6E-12 59.5 5.9 60 8-92 39-98 (101)
102 2dgp_A Bruno-like 4, RNA bindi 98.5 2.3E-07 8E-12 59.7 6.0 69 8-95 25-96 (106)
103 2dnq_A RNA-binding protein 4B; 98.5 6.5E-07 2.2E-11 56.3 7.5 61 8-95 20-80 (90)
104 1qm9_A Polypyrimidine tract-bi 98.5 1.9E-07 6.4E-12 65.2 5.4 63 8-94 132-196 (198)
105 2e5i_A Heterogeneous nuclear r 98.5 5.7E-07 1.9E-11 62.7 7.7 62 9-94 38-101 (124)
106 2cq1_A PTB-like protein L; RRM 98.5 1.4E-06 4.7E-11 58.1 9.3 67 8-99 27-95 (101)
107 3s7r_A Heterogeneous nuclear r 98.5 1.7E-06 5.8E-11 53.7 9.1 64 8-91 23-86 (87)
108 1rk8_A CG8781-PA, CG8781-PA pr 98.5 1.1E-06 3.9E-11 61.3 9.1 67 8-93 84-150 (165)
109 2lxi_A RNA-binding protein 10; 98.5 3E-07 1E-11 59.1 5.5 68 8-94 13-82 (91)
110 3ucg_A Polyadenylate-binding p 98.4 1.4E-06 4.6E-11 54.1 8.3 67 8-94 18-84 (89)
111 1x4e_A RNA binding motif, sing 98.4 1.3E-07 4.5E-12 58.7 3.6 63 8-89 17-79 (85)
112 1l3k_A Heterogeneous nuclear r 98.4 1.3E-06 4.4E-11 60.1 8.9 67 8-94 116-182 (196)
113 2kvi_A Nuclear polyadenylated 98.4 2.5E-07 8.5E-12 59.2 4.9 60 8-94 23-82 (96)
114 3r27_A HnRNP L, heterogeneous 98.4 9.4E-07 3.2E-11 60.0 8.0 61 8-93 33-95 (100)
115 1x4d_A Matrin 3; structural ge 98.4 5.2E-07 1.8E-11 60.7 6.5 60 9-93 29-90 (102)
116 2ki2_A SS-DNA binding protein 98.4 1.6E-07 5.6E-12 58.8 3.7 67 8-94 13-79 (90)
117 1wf1_A RNA-binding protein RAL 98.4 3.7E-07 1.3E-11 59.5 5.6 60 8-94 40-99 (110)
118 2cq2_A Hypothetical protein LO 98.4 7.5E-07 2.6E-11 61.7 7.3 62 8-94 39-105 (114)
119 3n9u_C Cleavage and polyadenyl 98.4 1.6E-06 5.4E-11 61.4 9.1 68 8-94 67-136 (156)
120 1b7f_A Protein (SXL-lethal pro 98.4 9.5E-07 3.2E-11 59.2 7.6 67 9-94 16-82 (168)
121 3tyt_A Heterogeneous nuclear r 98.4 7.5E-07 2.6E-11 65.0 7.6 61 9-93 18-78 (205)
122 2dhg_A TRNA selenocysteine ass 98.4 5.3E-07 1.8E-11 57.8 6.0 67 8-94 21-89 (104)
123 2dh8_A DAZ-associated protein 98.4 7.8E-07 2.7E-11 57.2 6.8 67 8-94 28-94 (105)
124 2i2y_A Fusion protein consists 98.4 4.3E-07 1.5E-11 62.1 5.8 62 9-94 86-147 (150)
125 1x5o_A RNA binding motif, sing 98.4 1.2E-06 4.2E-11 57.0 7.7 67 8-94 37-111 (114)
126 1fje_B Nucleolin RBD12, protei 98.4 1.1E-06 3.9E-11 59.7 7.7 61 9-93 112-172 (175)
127 2lkz_A RNA-binding protein 5; 98.4 5E-07 1.7E-11 59.5 5.7 66 8-92 21-92 (95)
128 2bz2_A Negative elongation fac 98.4 6.4E-07 2.2E-11 60.7 6.2 62 9-95 50-111 (121)
129 2adc_A Polypyrimidine tract-bi 98.4 6E-07 2.1E-11 65.1 6.5 62 9-94 164-227 (229)
130 1x4b_A Heterogeneous nuclear r 98.4 1.5E-06 5.2E-11 56.9 7.6 67 8-94 39-105 (116)
131 2mss_A Protein (musashi1); RNA 98.4 4.7E-07 1.6E-11 54.9 4.7 63 8-90 11-73 (75)
132 2jvr_A Nucleolar protein 3; RN 98.4 9.3E-07 3.2E-11 60.0 6.7 63 8-93 40-103 (111)
133 1uaw_A Mouse-musashi-1; RNP-ty 98.4 4.9E-07 1.7E-11 54.8 4.5 64 8-91 12-75 (77)
134 2dgs_A DAZ-associated protein 98.4 1.7E-06 5.9E-11 55.1 7.2 67 8-94 22-88 (99)
135 2jwn_A Embryonic polyadenylate 98.3 2.9E-06 9.9E-11 56.0 8.5 66 8-93 48-113 (124)
136 2lea_A Serine/arginine-rich sp 98.3 4.2E-07 1.5E-11 62.4 4.5 68 8-94 59-126 (135)
137 4f02_A Polyadenylate-binding p 98.3 3.1E-06 1.1E-10 60.7 9.1 67 8-93 27-93 (213)
138 2cjk_A Nuclear polyadenylated 98.3 1.4E-06 4.7E-11 58.5 6.7 67 8-94 99-165 (167)
139 2ad9_A Polypyrimidine tract-bi 98.3 1.5E-06 5E-11 60.4 6.9 66 8-98 43-110 (119)
140 3beg_B Splicing factor, argini 98.3 1.1E-06 3.7E-11 58.4 6.0 52 9-86 29-80 (115)
141 2cq4_A RNA binding motif prote 98.3 3.3E-06 1.1E-10 55.1 8.1 66 8-93 37-102 (114)
142 1sjq_A Polypyrimidine tract-bi 98.3 1.3E-06 4.3E-11 59.7 6.1 62 8-94 28-91 (105)
143 1wg1_A KIAA1579 protein, homol 98.3 2.3E-06 7.8E-11 53.9 6.9 64 8-97 17-80 (88)
144 1x4f_A Matrin 3; structural ge 98.3 5.9E-07 2E-11 61.8 4.4 60 9-93 39-100 (112)
145 2e5j_A Methenyltetrahydrofolat 98.3 6.4E-07 2.2E-11 57.2 4.3 63 8-94 31-93 (97)
146 2dis_A Unnamed protein product 98.3 2.2E-06 7.4E-11 55.3 6.7 69 8-95 20-92 (109)
147 3pgw_S U1-70K; protein-RNA com 98.3 2.5E-06 8.7E-11 69.4 8.4 68 8-94 114-181 (437)
148 2ghp_A U4/U6 snRNA-associated 98.3 3.6E-06 1.2E-10 62.1 8.5 67 8-93 223-289 (292)
149 2rs2_A Musashi-1, RNA-binding 98.3 4.7E-06 1.6E-10 54.9 8.0 66 8-93 37-102 (109)
150 2f3j_A RNA and export factor b 98.3 2E-06 6.9E-11 61.8 6.4 68 8-95 100-167 (177)
151 1s79_A Lupus LA protein; RRM, 98.2 2.9E-06 1E-10 56.1 6.5 63 8-91 23-85 (103)
152 2cqh_A IGF-II mRNA-binding pro 98.2 1.8E-06 6.2E-11 54.4 5.1 62 8-95 20-83 (93)
153 2qfj_A FBP-interacting repress 98.2 3.1E-06 1.1E-10 59.0 6.7 67 8-93 40-106 (216)
154 3pgw_A U1-A; protein-RNA compl 98.2 5E-06 1.7E-10 61.0 8.1 60 13-94 30-89 (282)
155 3smz_A Protein raver-1, ribonu 98.2 8.3E-06 2.9E-10 59.9 9.3 70 8-96 107-176 (284)
156 2cqg_A TDP-43, TAR DNA-binding 98.2 1.2E-05 4.2E-10 51.3 9.0 66 8-94 27-92 (103)
157 2dng_A Eukaryotic translation 98.2 1.2E-05 4E-10 51.6 8.8 67 8-95 27-93 (103)
158 2fc9_A NCL protein; structure 98.2 5.1E-06 1.8E-10 53.0 7.0 65 8-95 27-91 (101)
159 1wg5_A Heterogeneous nuclear r 98.2 4.4E-06 1.5E-10 54.3 6.7 69 8-97 27-96 (104)
160 1iqt_A AUF1, heterogeneous nuc 98.2 1.1E-06 3.7E-11 53.1 3.5 63 8-90 11-73 (75)
161 3q2s_C Cleavage and polyadenyl 98.2 3.6E-06 1.2E-10 62.7 7.1 67 8-93 80-148 (229)
162 1wi8_A EIF-4B, eukaryotic tran 98.2 9.1E-06 3.1E-10 52.2 8.0 68 8-95 27-94 (104)
163 2adc_A Polypyrimidine tract-bi 98.2 2.9E-06 9.9E-11 61.5 5.9 61 9-93 48-108 (229)
164 1qm9_A Polypyrimidine tract-bi 98.2 1.7E-06 5.7E-11 60.3 4.4 62 9-94 17-78 (198)
165 1fjc_A Nucleolin RBD2, protein 98.2 4.2E-06 1.4E-10 52.8 5.9 63 8-94 28-90 (96)
166 3egn_A RNA-binding protein 40; 98.2 6.5E-06 2.2E-10 55.8 7.0 64 8-93 57-128 (143)
167 1l3k_A Heterogeneous nuclear r 98.1 2.1E-05 7.1E-10 54.0 9.1 65 9-93 26-90 (196)
168 2cpy_A RNA-binding protein 12; 98.1 6.1E-06 2.1E-10 54.4 6.0 67 8-95 27-94 (114)
169 2cpx_A Hypothetical protein FL 98.1 3.8E-06 1.3E-10 54.6 4.8 65 8-95 37-105 (115)
170 2j76_E EIF-4B, EIF4B, eukaryot 98.1 4.8E-06 1.6E-10 53.6 5.0 65 9-93 32-96 (100)
171 3u1l_A PRE-mRNA-splicing facto 98.1 6.1E-06 2.1E-10 63.4 6.2 60 9-93 156-227 (240)
172 2lcw_A RNA-binding protein FUS 97.3 4.9E-07 1.7E-11 59.5 0.0 67 9-94 20-94 (116)
173 2fc8_A NCL protein; structure 98.0 2.4E-05 8.2E-10 49.8 7.6 64 9-94 28-91 (102)
174 2dgw_A Probable RNA-binding pr 98.0 4.9E-05 1.7E-09 47.5 8.9 65 8-94 22-86 (91)
175 2voo_A Lupus LA protein; RNA-b 98.0 3E-05 1E-09 56.2 8.9 62 9-91 122-183 (193)
176 2m2b_A RNA-binding protein 10; 98.0 1.6E-06 5.5E-11 58.5 1.9 66 9-94 36-107 (131)
177 2d9o_A DNAJ (HSP40) homolog, s 98.0 1.5E-05 5E-10 53.4 6.5 59 9-93 30-88 (100)
178 3sde_A Paraspeckle component 1 98.0 2.4E-05 8.3E-10 57.7 8.2 61 9-94 35-95 (261)
179 2diu_A KIAA0430 protein; struc 98.0 5.3E-06 1.8E-10 57.1 4.0 57 8-93 25-82 (96)
180 2hzc_A Splicing factor U2AF 65 98.0 3.1E-05 1.1E-09 47.6 7.2 56 9-90 19-85 (87)
181 2db1_A Heterogeneous nuclear r 98.0 2.4E-05 8.1E-10 52.2 7.1 67 8-95 29-98 (118)
182 2ghp_A U4/U6 snRNA-associated 98.0 1.9E-05 6.4E-10 58.2 7.1 67 8-94 129-196 (292)
183 3sde_A Paraspeckle component 1 98.0 2.7E-05 9.1E-10 57.5 7.8 67 8-94 108-178 (261)
184 2e5g_A U6 snRNA-specific termi 98.0 3.5E-05 1.2E-09 48.7 7.1 62 8-94 20-81 (94)
185 3nmr_A Cugbp ELAV-like family 97.9 3.8E-05 1.3E-09 51.4 7.2 53 9-63 16-68 (175)
186 2dnr_A Synaptojanin-1; RRM dom 97.9 6E-05 2E-09 51.3 7.3 59 8-94 27-85 (91)
187 2dnn_A RNA-binding protein 12; 97.8 6.1E-05 2.1E-09 50.6 7.2 63 9-93 29-91 (109)
188 1wez_A HnRNP H', FTP-3, hetero 97.8 5.2E-05 1.8E-09 49.6 6.7 65 8-94 27-91 (102)
189 3tht_A Alkylated DNA repair pr 97.8 5.7E-05 2E-09 60.7 7.8 47 8-64 32-78 (345)
190 2hgl_A HNRPF protein, heteroge 97.8 4.4E-05 1.5E-09 53.3 6.0 66 8-94 56-124 (136)
191 3tyt_A Heterogeneous nuclear r 97.8 6.4E-05 2.2E-09 54.7 6.8 56 9-85 136-193 (205)
192 2xs2_A Deleted in azoospermia- 97.8 7.1E-05 2.4E-09 47.7 6.2 48 8-60 21-68 (102)
193 1wel_A RNA-binding protein 12; 97.7 3.1E-05 1.1E-09 51.5 4.2 68 8-95 37-104 (124)
194 2dha_A FLJ20171 protein; RRM d 97.7 5.2E-05 1.8E-09 52.1 5.0 65 8-93 35-103 (123)
195 1ufw_A Synaptojanin 2; RNP dom 97.6 0.00012 4.2E-09 50.2 6.0 57 8-92 36-92 (95)
196 3d2w_A TAR DNA-binding protein 97.6 0.00028 9.7E-09 44.9 7.3 57 9-93 24-82 (89)
197 2cjk_A Nuclear polyadenylated 97.6 0.00017 5.7E-09 48.2 6.2 49 8-60 15-63 (167)
198 2dnl_A Cytoplasmic polyadenyla 97.6 0.00016 5.3E-09 47.5 6.0 73 8-94 20-100 (114)
199 2lmi_A GRSF-1, G-rich sequence 97.5 4.3E-05 1.5E-09 49.7 2.7 64 9-93 24-90 (107)
200 2hgn_A Heterogeneous nuclear r 97.5 3.9E-05 1.3E-09 53.9 2.4 65 8-94 58-122 (139)
201 2j8a_A Histone-lysine N-methyl 97.4 0.00075 2.6E-08 49.0 7.6 70 8-94 18-95 (136)
202 2g4b_A Splicing factor U2AF 65 97.4 0.00079 2.7E-08 45.1 7.2 59 8-92 16-85 (172)
203 1fj7_A Nucleolin RBD1, protein 97.3 3E-05 1E-09 49.3 0.1 65 8-93 29-93 (101)
204 2hgm_A HNRPF protein, heteroge 97.3 0.0002 7E-09 49.6 4.1 65 8-94 54-120 (126)
205 2yh0_A Splicing factor U2AF 65 97.3 0.00093 3.2E-08 45.7 7.2 59 9-93 17-86 (198)
206 1wf0_A TDP-43, TAR DNA-binding 97.3 0.00032 1.1E-08 43.6 4.0 61 8-94 17-77 (88)
207 1owx_A Lupus LA protein, SS-B, 96.9 0.002 7E-08 45.1 6.2 61 8-93 31-94 (121)
208 1fje_B Nucleolin RBD12, protei 96.9 0.00027 9.2E-09 47.8 1.4 65 9-94 26-90 (175)
209 2l9w_A U4/U6 snRNA-associated- 96.4 0.01 3.5E-07 42.3 6.6 47 21-92 51-97 (117)
210 1wwh_A Nucleoporin 35, nucleop 96.0 0.024 8.3E-07 40.0 7.1 58 9-92 36-94 (119)
211 1wey_A Calcipressin 1; structu 95.5 0.045 1.5E-06 37.9 6.5 59 10-93 24-82 (104)
212 3p3d_A Nucleoporin 53; structu 90.6 0.29 9.9E-06 35.2 4.1 71 9-95 19-99 (132)
213 2i2y_A Fusion protein consists 85.0 0.36 1.2E-05 32.3 1.6 35 42-92 13-48 (150)
214 2kn4_A Immunoglobulin G-bindin 70.5 3.4 0.00012 27.4 2.9 23 42-64 13-35 (158)
215 3pq1_A Poly(A) RNA polymerase; 66.2 3.8 0.00013 34.2 3.0 44 8-60 64-107 (464)
216 2e7g_A Putative ribosome-bindi 40.5 44 0.0015 22.7 4.5 49 20-80 43-92 (129)
217 3lpe_A Putative transcription 37.6 72 0.0025 20.3 5.0 29 23-60 40-68 (92)
218 1uw4_A UPF3X; nonsense mediate 35.6 41 0.0014 21.9 3.6 29 39-67 42-70 (91)
219 3p8b_B Transcription antitermi 32.6 76 0.0026 21.6 4.7 35 16-60 27-61 (152)
220 2kzf_A RBFA, ribosome-binding 31.6 81 0.0028 20.6 4.6 35 21-63 36-71 (106)
221 1jos_A RBFA, ribosome-binding 31.3 1.1E+02 0.0037 20.7 5.3 34 22-63 36-72 (128)
222 3fjv_A Uncharacterized novel p 29.0 35 0.0012 25.6 2.7 46 4-60 61-106 (194)
223 1whv_A Poly(A)-specific ribonu 28.8 89 0.003 21.3 4.4 40 11-62 30-69 (100)
224 2l08_A Regulator of nonsense t 21.4 71 0.0024 21.3 2.8 29 39-67 50-78 (97)
No 1
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.87 E-value=1.5e-22 Score=140.37 Aligned_cols=82 Identities=49% Similarity=0.761 Sum_probs=73.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
+|++|+++||++||+|.+|.|+.+..+........|.+||+|++.++|.+|+. +||||+|+||.|
T Consensus 37 dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~---------------~LnGr~f~GR~i 101 (118)
T 3ue2_A 37 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ---------------ALNGRWFAGRKV 101 (118)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHH---------------HHCCCEECCcEE
Confidence 58899999999999999999998765322334567999999999999999999 999999999999
Q ss_pred EEEEeccccccccCCCC
Q psy2134 88 RAELYDQSLFDHNDFSG 104 (104)
Q Consensus 88 ~a~~yd~~~f~~~~~~~ 104 (104)
.+.||+++.|.+++|+|
T Consensus 102 ~v~~~~~~~f~~~~~~~ 118 (118)
T 3ue2_A 102 VAEVYDQERFDNSDLSA 118 (118)
T ss_dssp EEEEECHHHHHTTCCCC
T ss_pred EEEEcChHhccccccCC
Confidence 99999999999999997
No 2
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.81 E-value=3e-20 Score=125.34 Aligned_cols=79 Identities=27% Similarity=0.393 Sum_probs=69.9
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.+|++|+++||++||+|++|.|+.+..+ ..+...|.+||+|++.++|.+|++ +||||+|+||.
T Consensus 26 ~~~~~dl~~~f~k~G~V~~v~i~~~~~~--~~~~~~G~~fV~f~~~~~A~~Ai~---------------~lnG~~f~GR~ 88 (105)
T 3v4m_A 26 EEIVEDVRDECSKYGLVKSIEIPRPVDG--VEVPGCGKIFVEFTSVFDCQKAMQ---------------GLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCCCBTT--BCCTTTTEEEEEESSHHHHHHHHH---------------HHTTCEETTEE
T ss_pred HHHHHHHHHHHHccCCEEEEEEeccCCC--CCcCCcEEEEEEECCHHHHHHHHH---------------HhCCCEeCCCE
Confidence 4688999999999999999999876542 112356789999999999999999 99999999999
Q ss_pred EEEEEeccccccccCC
Q psy2134 87 VRAELYDQSLFDHNDF 102 (104)
Q Consensus 87 V~a~~yd~~~f~~~~~ 102 (104)
|.+.|+|++.|.+++|
T Consensus 89 i~v~~~~~~~f~~~~~ 104 (105)
T 3v4m_A 89 VVTKYCDPDSYHRRDF 104 (105)
T ss_dssp CEEEEECHHHHHTTCC
T ss_pred EEEEEeCHHHHhhccC
Confidence 9999999999999987
No 3
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.79 E-value=8.6e-20 Score=132.74 Aligned_cols=82 Identities=49% Similarity=0.761 Sum_probs=74.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
++.+|+.+||++||.|.+|.|+.+.....+.....|.+||+|++.++|.+|+. .||||+|+||+|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~---------------~l~gr~~~gr~i 205 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ---------------ALNGRWFAGRKV 205 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHH---------------HHTTCBSSSSBC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHH---------------HhcCceECCeEE
Confidence 57889999999999999999998766544455788999999999999999999 999999999999
Q ss_pred EEEEeccccccccCCCC
Q psy2134 88 RAELYDQSLFDHNDFSG 104 (104)
Q Consensus 88 ~a~~yd~~~f~~~~~~~ 104 (104)
.+.|||++.|.+++|++
T Consensus 206 ~~~~~~~~~f~~~~~~~ 222 (222)
T 3dxb_A 206 VAEVYDQERFDNSDLSA 222 (222)
T ss_dssp EEEECCHHHHHTTCCCC
T ss_pred EEEEcCHHHhhhcccCC
Confidence 99999999999999986
No 4
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.76 E-value=2.5e-18 Score=116.14 Aligned_cols=79 Identities=33% Similarity=0.548 Sum_probs=69.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
++++|++++|++||.|.+|.|+.++... ....|.+||+|++.++|.+|+. .||||+|+||.|
T Consensus 25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~---~~~~G~~FV~f~~~~~A~~Ai~---------------~lnG~~~~Gr~i 86 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVGKCVIFEIPGAP---DDEAVRIFLEFERVESAIKAVV---------------DLNGRYFGGRVV 86 (105)
T ss_dssp -CHHHHHHHGGGGSCEEEEEEEECSSCC---TTTSEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred HHHHHHHHHHHhcCCEEEEEEecCCCCC---CCCcEEEEEEECCHHHHHHHHH---------------HHCCCEECCcEE
Confidence 5789999999999999999998764321 1346899999999999999999 999999999999
Q ss_pred EEEEeccccccccCCCC
Q psy2134 88 RAELYDQSLFDHNDFSG 104 (104)
Q Consensus 88 ~a~~yd~~~f~~~~~~~ 104 (104)
.+.+++++.|..++|+.
T Consensus 87 ~v~~a~~~~f~~~~~~~ 103 (105)
T 2pe8_A 87 KACFYNLDKFRVLDLAE 103 (105)
T ss_dssp EEEECCHHHHHTTCCCC
T ss_pred EEEEcCHHHhhhhhccc
Confidence 99999999999999974
No 5
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.71 E-value=7e-18 Score=116.43 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=63.9
Q ss_pred hheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 6 KVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 6 rv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
.-+|++|+++||++||.|++|.|+.++ ..|.+||+|++.++|.+|++ .||||+|+||
T Consensus 27 ~~el~edl~~~f~kfG~V~~v~i~~~~--------~~G~~fV~f~~~e~A~~Ai~---------------~lnG~~f~GR 83 (114)
T 3s6e_A 27 DTEIKDDVIEECNKHGGVIHIYVDKNS--------AQGNVYVKCPSIAAAIAAVN---------------ALHGRWFAGK 83 (114)
T ss_dssp HHHHHHHHHHHHTTTTCCSEEEECTTC--------TTCCEEEECSSHHHHHHHHH---------------HHTTCEETTE
T ss_pred HHHHHHHHHHHHhccCCEEEEEEecCC--------CcEEEEEEECCHHHHHHHHH---------------HhCCCEECCE
Confidence 457999999999999999999997653 14679999999999999999 9999999999
Q ss_pred EEEEEEeccccccc
Q psy2134 86 MVRAELYDQSLFDH 99 (104)
Q Consensus 86 ~V~a~~yd~~~f~~ 99 (104)
.|.+.|++++.|..
T Consensus 84 ~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 84 MITAAYVPLPTYHN 97 (114)
T ss_dssp ECEEEEECHHHHHH
T ss_pred EEEEEEEcHHHHHH
Confidence 99999999998865
No 6
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=1.6e-14 Score=96.84 Aligned_cols=66 Identities=29% Similarity=0.517 Sum_probs=58.5
Q ss_pred eehhHHHHHh-hhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDD-EAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec-~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
+|++|+++|| ++||+|.+|.|+.... ....|.+||+|++.++|.+|+. .||||+|+||.
T Consensus 38 ~~~edl~~~f~~~~G~V~~v~i~~~~~-----~~~~G~~fV~f~~~~~A~~A~~---------------~lng~~~~Gr~ 97 (104)
T 1jmt_A 38 EFFEEVFTEMEEKYGEVEEMNVCDNLG-----DHLVGNVYVKFRREEDAEKAVI---------------DLNNRWFNGQP 97 (104)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECCSSS-----SSSEEEEEEEESCHHHHHHHHH---------------HHTTCEETTEE
T ss_pred HHHHHHHHHhhccCCceEEEEEEeCCC-----CCccEEEEEEECCHHHHHHHHH---------------HHCCCEECCEE
Confidence 5779999999 9999999999987543 1346899999999999999999 99999999999
Q ss_pred EEEEEec
Q psy2134 87 VRAELYD 93 (104)
Q Consensus 87 V~a~~yd 93 (104)
|.+.|.|
T Consensus 98 i~v~~sp 104 (104)
T 1jmt_A 98 IHAELSP 104 (104)
T ss_dssp CCEEECC
T ss_pred EEEEEcC
Confidence 9999875
No 7
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.5e-13 Score=89.72 Aligned_cols=74 Identities=27% Similarity=0.510 Sum_probs=64.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.+++|+++.|++||.|.+|.|+... ..+..||+|.+.++|.+|+. .|||+.|.||.|
T Consensus 38 ~~e~~l~~~f~~~G~v~~v~i~~~~--------~~G~afV~f~~~~~A~~Ai~---------------~lng~~~~gr~l 94 (112)
T 2dit_A 38 EIREDLRVECSKFGQIRKLLLFDRH--------PDGVASVSFRDPEEADYCIQ---------------TLDGRWFGGRQI 94 (112)
T ss_dssp HHHHHHHHHGGGTSCCSEEEEETTC--------TTCEEEEECSCHHHHHHHHH---------------HSTTCEETTEEC
T ss_pred HHHHHHHHHHHccCCEeEEEEecCC--------CCEEEEEEECCHHHHHHHHH---------------HcCCCEECCcEE
Confidence 4678999999999999999885432 13568999999999999999 999999999999
Q ss_pred EEEEecc-ccccccCCCC
Q psy2134 88 RAELYDQ-SLFDHNDFSG 104 (104)
Q Consensus 88 ~a~~yd~-~~f~~~~~~~ 104 (104)
.+.+.++ ..|..++.+|
T Consensus 95 ~v~~a~~~~~~~~~~~sg 112 (112)
T 2dit_A 95 TAQAWDGTTDYQSGPSSG 112 (112)
T ss_dssp EEEECCSCCCSSCCCCCC
T ss_pred EEEEeCCCCCcccCCCCC
Confidence 9999866 7898888876
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.92 E-value=9.8e-09 Score=67.34 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=55.5
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++||+|.+|.|..++.+. ...+-.||+|.+.++|.+|+. .|||..+.||.|.
T Consensus 32 te~~L~~~F~~~G~I~~v~i~~d~~tg----~~kG~afV~f~~~~~A~~Ai~---------------~lng~~~~gr~l~ 92 (99)
T 4fxv_A 32 TQDELRSLFSSIGEVESAKLIRDKVAG----HSLGYGFVNYVTAKDAERAIN---------------TLNGLRLQSKTIK 92 (99)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHHHhcCCEEEeEeeecCCCC----cccccEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence 467889899999999999998765421 234568999999999999999 9999999999999
Q ss_pred EEEec
Q psy2134 89 AELYD 93 (104)
Q Consensus 89 a~~yd 93 (104)
+.+-.
T Consensus 93 V~~Ak 97 (99)
T 4fxv_A 93 VSYAR 97 (99)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 98753
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.90 E-value=1.1e-08 Score=68.53 Aligned_cols=67 Identities=21% Similarity=0.161 Sum_probs=56.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++++++-+++||.|.+|.|..++.+. ...+-.||+|++.++|.+|+. .|||..+.||.|
T Consensus 18 ~te~~L~~~F~~~G~i~~v~i~~d~~tg----~~rG~aFV~f~~~~~A~~Ai~---------------~lng~~~~gr~i 78 (110)
T 3s8s_A 18 VRETFLKDMCRKYGEVEEVEILLHPRTR----KHLGLARVLFTSTRGAKETVK---------------NLHLTSVMGNII 78 (110)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEECCCCC----ceeeEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence 3467889999999999999998765421 235678999999999999999 999999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-+
T Consensus 79 ~V~~a~ 84 (110)
T 3s8s_A 79 HAQLDI 84 (110)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 998754
No 10
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2e-08 Score=63.26 Aligned_cols=65 Identities=25% Similarity=0.295 Sum_probs=55.2
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=.+|+++-+++||.|.+|.|...+.. ....+..||+|.+.++|.+|+. .|||..+.|+.|.
T Consensus 28 t~~~l~~~f~~~G~v~~v~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 28 TERDLREVFSKYGPIADVSIVYDQQS----RRSRGFAFVYFENVDDAKEAKE---------------RANGMELDGRRIR 88 (95)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSS----SSEEEEEEEEESSHHHHHHHHH---------------HHTTEEETTEEEE
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCC----CCcccEEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence 46788999999999999999876442 1235679999999999999999 9999999999999
Q ss_pred EEEe
Q psy2134 89 AELY 92 (104)
Q Consensus 89 a~~y 92 (104)
+.+-
T Consensus 89 v~~a 92 (95)
T 2cqc_A 89 VSGP 92 (95)
T ss_dssp EECC
T ss_pred EEec
Confidence 8864
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.85 E-value=2.9e-08 Score=61.11 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=56.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 13 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~---------------~l~g~~~~g~~l 73 (83)
T 3md1_A 13 VDDETLRNAFKDFPSYLSGHVMWDMQTG----SSRGYGFVSFTSQDDAQNAMD---------------SMQGQDLNGRPL 73 (83)
T ss_dssp CCHHHHHHHHTTSTTEEEEEEEECTTTC----CEEEEEEEEESCHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEcCCCC----CccceEEEEECCHHHHHHHHH---------------HhcCCeeCCcEE
Confidence 3467899999999999999998764421 235678999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-.+
T Consensus 74 ~v~~a~~ 80 (83)
T 3md1_A 74 RINWAAK 80 (83)
T ss_dssp EEEECCC
T ss_pred EEEecCc
Confidence 9987643
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.85 E-value=2.6e-08 Score=61.80 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=56.5
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...+.. ....+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 78 (87)
T 3bs9_A 18 ITTAAIAAAFAPFGRISDARVVKDMAT----GKSKGYGFVSFFNKWDAENAIQ---------------QMGGQWLGGRQI 78 (87)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCC----CccceEEEEEECCHHHHHHHHH---------------HcCCCEECCeEE
Confidence 456889999999999999999876432 1235678999999999999999 999999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
...+-.
T Consensus 79 ~v~~a~ 84 (87)
T 3bs9_A 79 RTNWAT 84 (87)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 988753
No 13
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.85 E-value=1.1e-08 Score=63.19 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=53.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|+.++... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 19 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 79 (85)
T 3mdf_A 19 VDDKVLHAAFIPFGDITDIQIPLDYETE----KHRGFAFVEFELAEDAAAAID---------------NMNESELFGRTI 79 (85)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHhccCCEEEEEEEECCCCC----ccccEEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence 3467899999999999999887654321 123568999999999999999 999999999999
Q ss_pred EEEE
Q psy2134 88 RAEL 91 (104)
Q Consensus 88 ~a~~ 91 (104)
.+.+
T Consensus 80 ~v~~ 83 (85)
T 3mdf_A 80 RVNL 83 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 14
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2e-08 Score=63.27 Aligned_cols=65 Identities=25% Similarity=0.369 Sum_probs=54.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.+. ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 28 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 88 (94)
T 2e5h_A 28 LTNNDLYRIFSKYGKVVKVTIMKDKDTR----KSKGVAFILFLDKDSAQNCTR---------------AINNKQLFGRVI 88 (94)
T ss_dssp SCHHHHHHHTTTTSCEEEEEECCCSSSC----CCTTCEEEEESCHHHHHHHHH---------------HTTTEEETTEEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCC----CcccEEEEEECCHHHHHHHHH---------------HcCCCeeCCcEE
Confidence 4568899999999999999998764421 122458999999999999999 999999999999
Q ss_pred EEEE
Q psy2134 88 RAEL 91 (104)
Q Consensus 88 ~a~~ 91 (104)
.+.+
T Consensus 89 ~v~~ 92 (94)
T 2e5h_A 89 KASI 92 (94)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9876
No 15
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.80 E-value=2.2e-08 Score=62.05 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=56.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|........ ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 16 ~t~~~l~~~F~~~G~i~~~~i~~~~~~~~---~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 77 (88)
T 4a8x_A 16 VTKDHIMEIFSTYGKIKMIDMPVERMHPH---LSKGYAYVEFENPDEAEKALK---------------HMDGGQIDGQEI 77 (88)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCEETTEEE---EECSEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhCCCEEEEEEEeCCCCCC---CCCcEEEEEEecHHHHHHHHH---------------HcCCCeECCeEE
Confidence 44678999999999999998876543210 124568999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+...
T Consensus 78 ~v~~a~~ 84 (88)
T 4a8x_A 78 TATAVLA 84 (88)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9998754
No 16
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.80 E-value=4e-08 Score=65.47 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=55.1
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=.+|+++.+++||.|.++.|...... ....+-.||+|.+.++|.+|+. .|||+.+.||.|.
T Consensus 100 t~~~l~~~f~~~G~i~~~~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~i~ 160 (166)
T 3md3_A 100 DDETLRNAFKDFPSYLSGHVMWDMQT----GSSRGYGFVSFTSQDDAQNAMD---------------SMQGQDLNGRPLR 160 (166)
T ss_dssp CHHHHHHHHTTSTTEEEEEEEECTTT----CCEEEEEEEEESCHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHHhccCCeeEEEEEecCCC----CCcceEEEEEeCCHHHHHHHHH---------------HhCCCccCCcEEE
Confidence 45789999999999999999876432 1234568999999999999999 9999999999999
Q ss_pred EEEe
Q psy2134 89 AELY 92 (104)
Q Consensus 89 a~~y 92 (104)
+.|-
T Consensus 161 v~~a 164 (166)
T 3md3_A 161 INWA 164 (166)
T ss_dssp EEES
T ss_pred EEec
Confidence 8864
No 17
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.80 E-value=1.6e-08 Score=67.28 Aligned_cols=68 Identities=19% Similarity=0.161 Sum_probs=58.5
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+ +..||+|.+.++|.+|+. .|||..|.||.|
T Consensus 22 ~te~~L~~~F~~~G~i~~v~i~~~~----------g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l 76 (111)
T 1whx_A 22 TLAAEIQETFSRFGSLGRVLLPEGG----------ITAIVEFLEPLEARKAFR---------------HLAYSKFHHVPL 76 (111)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCSSS----------SCEEEEESCHHHHHHHHH---------------HHTTCBSSSSBC
T ss_pred CCHHHHHHHHHhcCCEEEEEEeCCC----------CEEEEEeCCHHHHHHHHH---------------HhCCCEECCeEE
Confidence 4578899999999999998886422 248999999999999999 999999999999
Q ss_pred EEEEecccccccc
Q psy2134 88 RAELYDQSLFDHN 100 (104)
Q Consensus 88 ~a~~yd~~~f~~~ 100 (104)
...+-....|..+
T Consensus 77 ~V~~a~~~~~~~~ 89 (111)
T 1whx_A 77 YLEWAPIGVFGAA 89 (111)
T ss_dssp EEEEEETTTTCCC
T ss_pred EEEECCCCccCCC
Confidence 9999888777654
No 18
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.79 E-value=3.5e-08 Score=62.29 Aligned_cols=65 Identities=23% Similarity=0.167 Sum_probs=55.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...+.. ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 28 ~~~~~l~~~F~~~G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 87 (95)
T 2ywk_A 28 VREEILYELFLQAGPLTKVTICKDREG-----KPKSFGFVCFKHPESVSYAIA---------------LLNGIRLYGRPI 87 (95)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTS-----CEEEEEEEEESSTHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCC-----CCceEEEEEECCHHHHHHHHH---------------HhCCCEECCCEE
Confidence 346889999999999999999876431 235679999999999999999 999999999999
Q ss_pred EEEEe
Q psy2134 88 RAELY 92 (104)
Q Consensus 88 ~a~~y 92 (104)
.+.+-
T Consensus 88 ~V~~a 92 (95)
T 2ywk_A 88 NVSGP 92 (95)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 98764
No 19
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.79 E-value=6e-09 Score=64.85 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=48.5
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe-EE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR-MV 87 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR-~V 87 (104)
.++++++-+++||.|.+|.|+.... ...+-.||+|.+.++|.+|+. .|||+.+.|| .|
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g------~~~g~afV~f~~~~~A~~Ai~---------------~lng~~~~g~~~l 78 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDG------KTKGYIFLEYASPAHAVDAVK---------------NADGYKLDKQHTF 78 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTT------BCCCEEEEEESSHHHHHHHHT---------------TSSSCCCSSSSCC
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCC------cEeEEEEEEECCHHHHHHHHH---------------HhcCcccCCceeE
Confidence 5689999999999999998873221 224568999999999999999 8888888888 66
Q ss_pred E
Q psy2134 88 R 88 (104)
Q Consensus 88 ~ 88 (104)
+
T Consensus 79 ~ 79 (81)
T 2krb_A 79 R 79 (81)
T ss_dssp C
T ss_pred E
Confidence 4
No 20
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.77 E-value=9.5e-09 Score=66.87 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=57.3
Q ss_pred heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC-e
Q psy2134 7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG-R 85 (104)
Q Consensus 7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G-R 85 (104)
-..++++++-+++||.|.+|.|+..+.+. ...+-.||+|.+.++|.+|+. .|||..+.| |
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg----~~kG~afV~f~~~~~A~~Ai~---------------~lng~~~~g~r 83 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATG----KTKGFLFVECGSMNDAKKIIK---------------SFHGKRLDLKH 83 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHH---------------HHTTCBSSSSC
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCcccCCCe
Confidence 56678899999999999999998765421 123568999999999999999 999999999 9
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.|.+.+..+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999887643
No 21
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=3.3e-08 Score=63.50 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=53.4
Q ss_pred hhHHH----HHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 10 YNEKQ----SDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 10 ~~ev~----~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
++|++ +-+++||.|.+|.|...... .+..||+|.+.++|.+|+. .|||..+.||
T Consensus 23 ~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-------rg~afV~f~~~~~A~~Ai~---------------~l~g~~~~gr 80 (96)
T 2dgx_A 23 RKELQQLLQEAFARHGKVKSVELSPHTDY-------QLKAVVQMENLQDAIGAVN---------------SLHRYKIGSK 80 (96)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEECSCCST-------TCCEEEEESSHHHHHHHHH---------------HHTTEEETTE
T ss_pred HHHHHHHHHHhccccCcEEEEEEEeCCCC-------CeEEEEEECCHHHHHHHHH---------------HhCCCEECCe
Confidence 45565 88999999999999876542 2468999999999999999 9999999999
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.|++.+-..
T Consensus 81 ~l~V~~a~~ 89 (96)
T 2dgx_A 81 KILVSLATG 89 (96)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 999987643
No 22
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.76 E-value=6.3e-08 Score=63.36 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=57.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.. ....+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 87 (115)
T 2dgo_A 27 ITTEDIKAAFAPFGRISDARVVKDMAT----GKSKGYGFVSFFNKWDAENAIQ---------------QMGGQWLGGRQI 87 (115)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHH---------------HTTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEcCCC----CCcceEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence 346789999999999999999876432 1235678999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+...
T Consensus 88 ~V~~a~~ 94 (115)
T 2dgo_A 88 RTNWATR 94 (115)
T ss_dssp EEEESSC
T ss_pred EEEEccC
Confidence 9998754
No 23
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.76 E-value=4.3e-08 Score=64.62 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=55.1
Q ss_pred hhHHH---HHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 10 YNEKQ---SDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 10 ~~ev~---~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
++|++ +-+++||.|.+|.|....... ......+-.||+|.+.++|.+|+. .|||..+.||.
T Consensus 29 ~~~l~~~~~~F~~~G~i~~v~i~~~~~~~-~~~~~~G~afV~f~~~~~A~~Ai~---------------~lng~~~~gr~ 92 (111)
T 2cpi_A 29 DPEVLKRPEYFGKFGKIHKVVINNSTSYA-GSQGPSASAYVTYIRSEDALRAIQ---------------CVNNVVVDGRT 92 (111)
T ss_dssp CHHHHHSTTTTTTTSCEEEEEEECCSSCC-SSSCCCEEEEEEESSHHHHHHHHH---------------HHTTEEETTEE
T ss_pred HHHHHHHHHHhhccCCEEEEEEecCCCcC-ccCCCCeEEEEEECcHHHHHHHHH---------------HhCCCEECCEE
Confidence 46777 789999999999997654321 111224679999999999999999 99999999999
Q ss_pred EEEEEecc
Q psy2134 87 VRAELYDQ 94 (104)
Q Consensus 87 V~a~~yd~ 94 (104)
|.+.+-..
T Consensus 93 l~V~~a~~ 100 (111)
T 2cpi_A 93 LKASLGTT 100 (111)
T ss_dssp EEEESCCC
T ss_pred EEEEeccc
Confidence 99987644
No 24
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=5.2e-08 Score=62.63 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=57.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. .|||..|.|+.|
T Consensus 27 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 87 (103)
T 2cq0_A 27 TRETDLQELFRPFGSISRIYLAKDKTTG----QSKGFAFISFHRREDAARAIA---------------GVSGFGYDHLIL 87 (103)
T ss_dssp CCHHHHHTTSTTTCCEEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHHH---------------HTTTCEETTEEC
T ss_pred CCHHHHHHHHHhCCCeEEEEEeecCCCC----ceeeEEEEEECCHHHHHHHHH---------------HcCCCeeCCcEE
Confidence 4467888889999999999998765321 234678999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+....
T Consensus 88 ~v~~a~~~ 95 (103)
T 2cq0_A 88 NVEWAKPS 95 (103)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 99986543
No 25
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.75 E-value=3.3e-08 Score=69.07 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=57.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++.+++||.|.+|.|...... ....+..||+|.+.++|.+|+. .|||+.|.||.|
T Consensus 137 ~t~~~l~~~f~~~G~v~~v~i~~~~~~----g~~~g~afV~F~~~~~A~~A~~---------------~l~g~~~~g~~i 197 (216)
T 2qfj_A 137 LSDDDIKSVFEAFGKIKSATLARDPTT----GKHKGYGFIEYEKAQSSQDAVS---------------SMNLFDLGGQYL 197 (216)
T ss_dssp CCHHHHHHHHTTSSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHH---------------HHTTCBCSSSBC
T ss_pred CCHHHHHHHHhccCCeeEEEEEecCCC----CCcCceEEEEecCHHHHHHHHH---------------HccCCEeCCcEE
Confidence 347899999999999999999876432 1234678999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+...
T Consensus 198 ~V~~a~~ 204 (216)
T 2qfj_A 198 RVGKAVT 204 (216)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9987654
No 26
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.1e-07 Score=61.15 Aligned_cols=68 Identities=22% Similarity=0.162 Sum_probs=57.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.. ..+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~------~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 85 (103)
T 2cqi_A 27 VTEVLILQLFSQIGPCKSCKMITEHTS------NDPYCFVEFYEHRDAAAALA---------------AMNGRKILGKEV 85 (103)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEECCCCS------SCCEEEEEESSHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCC------CCCEEEEEECCHHHHHHHHH---------------HhCCCCcCCCeE
Confidence 346788989999999999999886442 23578999999999999999 999999999999
Q ss_pred EEEEecccc
Q psy2134 88 RAELYDQSL 96 (104)
Q Consensus 88 ~a~~yd~~~ 96 (104)
.+.+-....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2cqi_A 86 KVNWATTPS 94 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCc
Confidence 999876543
No 27
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=3.8e-08 Score=62.14 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=57.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.+. ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 17 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 77 (95)
T 2dnz_A 17 ITEDMLRGIFEPFGKIDNIVLMKDSDTG----RSKGYGFITFSDSECARRALE---------------QLNGFELAGRPM 77 (95)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEECCSSSC----CCCSEEEEEESCHHHHHHHHH---------------HHTTCCSSSSCC
T ss_pred CCHHHHHHHHHhcCCEeEEEEeecCCCC----ceeeEEEEEECCHHHHHHHHH---------------HhCCCeeCCcEE
Confidence 4568899999999999999998765421 223568999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+...
T Consensus 78 ~V~~a~~ 84 (95)
T 2dnz_A 78 RVGHVTE 84 (95)
T ss_dssp EEEESSC
T ss_pred EEEEccc
Confidence 9998754
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=5.9e-08 Score=61.81 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=56.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|....... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 20 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 80 (99)
T 1whw_A 20 SSEEDLEKLFSAYGPLSELHYPIDSLTK----KPKGFAFVTFMFPEHAVKAYA---------------EVDGQVFQGRML 80 (99)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCCCTTTC----CCCSEEEEEESSHHHHHHHHH---------------HTTTEESSSCEE
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCCC----CcCeEEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence 3467899999999999999987755321 223568999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+....
T Consensus 81 ~V~~a~~~ 88 (99)
T 1whw_A 81 HVLPSTIK 88 (99)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99987554
No 29
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.75 E-value=7.7e-08 Score=62.03 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=55.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.. ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 41 ~t~~~l~~~F~~~G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 100 (107)
T 3ulh_A 41 VSDADIQELFAEFGTLKKAAVHYDRSG-----RSLGTADVHFERKADALKAMK---------------QYNGVPLDGRPM 100 (107)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECTTS-----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCC-----CcceEEEEEECCHHHHHHHHH---------------HhCCCEeCCcEE
Confidence 346788888999999999999876521 235678999999999999999 999999999999
Q ss_pred EEEEe
Q psy2134 88 RAELY 92 (104)
Q Consensus 88 ~a~~y 92 (104)
.+.+-
T Consensus 101 ~V~~a 105 (107)
T 3ulh_A 101 NIQLV 105 (107)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98874
No 30
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.74 E-value=2.5e-08 Score=65.22 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=54.1
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe-EE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR-MV 87 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR-~V 87 (104)
.++++++-+++||.|.+|.|+.... ...+-.||+|.+.++|.+|+. .|||..|.|| .|
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g------~~~G~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~~l 92 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDG------KTKGYIFLEYASPAHAVDAVK---------------NADGYKLDKQHTF 92 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTT------BSCCEEEEEECSSSHHHHHHH---------------HCSSEECSTTCEE
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCC------CeeeEEEEEECCHHHHHHHHH---------------HhCCcccCCCceE
Confidence 5788999999999999998873211 223568999999999999999 9999999999 99
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+.+
T Consensus 93 ~V~~a~ 98 (105)
T 2nlw_A 93 RVNLFT 98 (105)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 998874
No 31
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.74 E-value=5.6e-08 Score=65.73 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=54.5
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=.+|+++-+++||.|.+|.|...+.. ....+..||+|.+.++|.+|+. .|||+.+.||.|.
T Consensus 107 t~~~l~~~f~~~G~v~~v~i~~~~~~----g~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l~ 167 (172)
T 2g4b_A 107 NDDQVKELLTSFGPLKAFNLVKDSAT----GLSKGYAFCEYVDINVTDQAIA---------------GLNGMQLGDKKLL 167 (172)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECTTT----CSEEEEEEEEESSTTHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHHHhcCCceEEEEEecCCC----CCcceEEEEEeCCHHHHHHHHH---------------HcCCCEECCeEEE
Confidence 36789999999999999999876432 1234679999999999999999 9999999999999
Q ss_pred EEE
Q psy2134 89 AEL 91 (104)
Q Consensus 89 a~~ 91 (104)
+.+
T Consensus 168 V~~ 170 (172)
T 2g4b_A 168 VQR 170 (172)
T ss_dssp EEE
T ss_pred EEe
Confidence 875
No 32
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.73 E-value=7.9e-08 Score=61.24 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=57.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.+. ...+..||+|.+.++|.+|+. .|||..+.|+.+
T Consensus 14 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l 74 (96)
T 2x1f_A 14 QTEEQILDLCSNVGPVINLKMMFDPQTG----RSKGYAFIEFRDLESSASAVR---------------NLNGYQLGSRFL 74 (96)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCTTTC----CBCSEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCeECCeEE
Confidence 3467889999999999999998764321 224568999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 75 ~V~~a~~~ 82 (96)
T 2x1f_A 75 KCGYSSNS 82 (96)
T ss_dssp EEEECSCS
T ss_pred EEEEcCCC
Confidence 99987554
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.73 E-value=7.3e-08 Score=64.04 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=55.9
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++||.|.+|.|..++.. ..+-.||+|.+.++|.+|+. .|||..+.||.|.
T Consensus 18 te~~L~~~F~~~G~v~~v~i~~d~~~------~kg~afV~f~~~~~A~~Ai~---------------~l~~~~~~g~~i~ 76 (115)
T 4f25_A 18 DNKALYDTFSAFGNILSCKVVCDENG------SKGYGFVHFETQEAAERAIE---------------KMNGMLLNDRKVF 76 (115)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEEETTE------EEEEEEEEESCHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHHhccCCEEEEEEeecCCC------CCceEEEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence 46788889999999999999876431 24678999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
+.+...
T Consensus 77 V~~a~~ 82 (115)
T 4f25_A 77 VGRFKS 82 (115)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 988754
No 34
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1e-07 Score=60.93 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=56.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...... ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 29 ~t~~~l~~~F~~~G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 88 (100)
T 2do4_A 29 CTKEELEEICKAHGTVKDLRLVTNRAG-----KPKGLAYVEYENESQASQAVM---------------KMDGMTIKENII 88 (100)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTS-----CEEEEEEEEESSHHHHHHHHH---------------HHTTEESSSCEE
T ss_pred CCHHHHHHHHHhCCCeEEEEEEECCCC-----CEEeEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence 346789999999999999999876521 234679999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 89 ~v~~a~~ 95 (100)
T 2do4_A 89 KVAISNS 95 (100)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9987643
No 35
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.9e-07 Score=60.00 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=57.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...... ..+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 27 ~t~~~l~~~f~~~G~v~~v~i~~~~~~------~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 85 (103)
T 2cq3_A 27 FRDPDLRQMFGQFGKILDVEIIFNERG------SKGFGFVTFENSADADRARE---------------KLHGTVVEGRKI 85 (103)
T ss_dssp CCHHHHHHHGGGTSCEEEEEEECCTTT------TCCEEEEEESCHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCC------CcEEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence 346788989999999999999876432 23568999999999999999 999999999999
Q ss_pred EEEEecccc
Q psy2134 88 RAELYDQSL 96 (104)
Q Consensus 88 ~a~~yd~~~ 96 (104)
.+.+-....
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999876543
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=7.4e-08 Score=62.03 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=55.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...+.+ ....+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 35 ~t~~~l~~~f~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 95 (106)
T 1p27_B 35 ATEEDIHDKFAEYGEIKNIHLNLDRRT----GYLKGYTLVEYETYKEAQAAME---------------GLNGQDLMGQPI 95 (106)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTT----SSEEEEEEEEESCHHHHHHHHH---------------HHTTCBSSSSBC
T ss_pred CCHHHHHHHHhccCCeEEEEEEecCCC----CceeeEEEEEECCHHHHHHHHH---------------HhcCCEECCcEE
Confidence 346789999999999999999876542 1235679999999999999999 899999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 96 ~V~~a~ 101 (106)
T 1p27_B 96 SVDWCF 101 (106)
T ss_dssp EEEESE
T ss_pred EEEeec
Confidence 988753
No 37
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=4.9e-08 Score=62.49 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=56.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 24 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 84 (102)
T 2cqb_A 24 VDDKVLHAAFIPFGDITDIQIPLDYETE----KHRGFAFVEFELAEDAAAAID---------------NMNESELFGRTI 84 (102)
T ss_dssp CCHHHHHHHHTTTSCCCCEECCCCSSSC----CCSSEEEECCSSHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred CCHHHHHHHhhccCCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence 3468899999999999999987754321 123568999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 85 ~V~~a~~~ 92 (102)
T 2cqb_A 85 RVNLAKPM 92 (102)
T ss_dssp EEEECCCC
T ss_pred EEEeCCCC
Confidence 99987554
No 38
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=1.1e-07 Score=61.77 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=55.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|..|.|.....+ .+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 34 ~t~~~l~~~F~~~G~v~~~~i~~~~~~-------~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 91 (109)
T 1x4a_A 34 IRTKDIEDVFYKYGAIRDIDLKNRRGG-------PPFAFVEFEDPRDAEDAVY---------------GRDGYDYDGYRL 91 (109)
T ss_dssp CCHHHHHHHHGGGSCEEEEEECCSSSS-------SCCEEEEESCHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCC-------CcEEEEEECCHHHHHHHHH---------------HcCCCEECCeEE
Confidence 346789999999999999999654332 3468999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 92 ~V~~a~~ 98 (109)
T 1x4a_A 92 RVEFPRS 98 (109)
T ss_dssp EEECCCC
T ss_pred EEEEccc
Confidence 9987654
No 39
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.5e-07 Score=61.23 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=56.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...... ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 27 ~~~~~l~~~f~~~G~i~~~~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 86 (114)
T 2do0_A 27 VGWKKLKEVFSMAGVVVRADILEDKDG-----KSRGIGTVTFEQSIEAVQAIS---------------MFNGQLLFDRPM 86 (114)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTC-----SEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCC-----CeeeEEEEEECCHHHHHHHHH---------------HhCCCEeCCCEE
Confidence 346789999999999999999876431 235679999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 87 ~v~~a~~ 93 (114)
T 2do0_A 87 HVKMDER 93 (114)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9998643
No 40
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.69 E-value=7.3e-08 Score=63.04 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=55.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|.....+ .+..||+|.+.++|.+|+. .|||..+.|+.+
T Consensus 20 ~t~~~l~~~F~~~G~v~~v~i~~~~~~-------~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 77 (115)
T 3lqv_A 20 ITAEEMYDIFGKYGPIRQIRVGNTPET-------RGTAYVVYEDIFDAKNAVD---------------HLSGFNVSNRYL 77 (115)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEECSTTT-------TTCEEEEESSHHHHHHHHH---------------HHTTCBSSSCBC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCCCC-------CcEEEEEECCHHHHHHHHH---------------HcCCCEECCeEE
Confidence 346788999999999999999865432 3458999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+...
T Consensus 78 ~v~~a~~ 84 (115)
T 3lqv_A 78 VVLYYNA 84 (115)
T ss_dssp EEEECCH
T ss_pred EEEEecC
Confidence 9998764
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.69 E-value=9.5e-08 Score=62.65 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=57.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.. ....+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 37 ~t~~~l~~~F~~~G~i~~v~i~~~~~~----g~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 97 (115)
T 2cpz_A 37 FGDQDLLQMFMPFGNVVSAKVFIDKQT----NLSKCFGFVSYDNPVSAQAAIQ---------------SMNGFQIGMKRL 97 (115)
T ss_dssp CCHHHHHHHHGGGSCCSEEEEEECSSS----CSEEEEEEEECSSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCC----CCcCccEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence 346789999999999999999876532 1234678999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 98 ~V~~a~~~ 105 (115)
T 2cpz_A 98 KVQLKRSK 105 (115)
T ss_dssp EEECCCCS
T ss_pred EEEEcCCC
Confidence 99976543
No 42
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.4e-07 Score=60.35 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=52.5
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
++|+++-+++||.|.+|.|...+ +..||+|.+.++|.+|+. .|||..+.|+.|.+
T Consensus 27 ~~~l~~~F~~~G~i~~v~i~~~~----------g~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 27 PTLLRGAFSPFGNIIDLSMDPPR----------NCAFVTYEKMESADQAVA---------------ELNGTQVESVQLKV 81 (97)
T ss_dssp HHHHHHHHTTTSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HTTTEEETTEEEEE
T ss_pred HHHHHHHHhhCCCEEEEEecCCC----------CEEEEEECCHHHHHHHHH---------------HhCCCeECCeEEEE
Confidence 57888899999999999985322 358999999999999999 99999999999999
Q ss_pred EEeccc
Q psy2134 90 ELYDQS 95 (104)
Q Consensus 90 ~~yd~~ 95 (104)
.+-...
T Consensus 82 ~~a~~~ 87 (97)
T 1x5p_A 82 NIARKQ 87 (97)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 876543
No 43
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=8.7e-08 Score=60.71 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=54.5
Q ss_pred eehhHHHHHhhhCCceeEE-EEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDDEAYGQVEKV-VIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV-~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.-.+|+++-+++||.|.+| .|...+.. ++.||+|.+.++|.+|+. .|||..+.||.
T Consensus 27 ~t~~~l~~~F~~~G~v~~~~~i~~~~~~--------~~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~ 83 (96)
T 2e44_A 27 LQWEVLDSLLVQYGVVESCEQVNTDSET--------AVVNVTYSSKDQARQALD---------------KLNGFQLENFT 83 (96)
T ss_dssp SCHHHHHHHHHHHSCEEEEEEECCSSSS--------EEEEEEESSHHHHHHHHH---------------HHTTCBCSSCB
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCC--------CEEEEEECCHHHHHHHHH---------------HhCCCEECCcE
Confidence 3467888889999999998 47664432 239999999999999999 99999999999
Q ss_pred EEEEEeccc
Q psy2134 87 VRAELYDQS 95 (104)
Q Consensus 87 V~a~~yd~~ 95 (104)
|.+.+....
T Consensus 84 l~V~~a~~~ 92 (96)
T 2e44_A 84 LKVAYIPDE 92 (96)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCcc
Confidence 999987654
No 44
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=3.9e-08 Score=62.98 Aligned_cols=69 Identities=25% Similarity=0.363 Sum_probs=57.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. .|||..|.|+.|
T Consensus 24 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 84 (102)
T 1x5s_A 24 TNEQSLEQVFSKYGQISEVVVVKDRETQ----RSRGFGFVTFENIDDAKDAMM---------------AMNGKSVDGRQI 84 (102)
T ss_dssp CCHHHHHHHHHHHSCCCEEEECCCSSSC----SCCSEEEEECSSHHHHHHHHH---------------HHTTCCTTSCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCC----CcccEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence 4467899999999999999998754321 123568999999999999999 899999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 85 ~v~~a~~~ 92 (102)
T 1x5s_A 85 RVDQAGKS 92 (102)
T ss_dssp EEEEEECC
T ss_pred EEEECCCC
Confidence 99987553
No 45
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.67 E-value=7.9e-08 Score=64.08 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=52.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE-
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM- 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~- 86 (104)
.-.+++++.+++||.|.++.|...... ....+..||+|.+.++|.+|+. .|||+.+.||.
T Consensus 100 ~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~~ 160 (167)
T 1fxl_A 100 MTQKELEQLFSQYGRIITSRILVDQVT----GVSRGVGFIRFDKRIEAEEAIK---------------GLNGQKPSGATE 160 (167)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHH---------------HHTTCCCTTCSS
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCC----CCccceEEEEeCCHHHHHHHHH---------------HhcCCccCCCcc
Confidence 346889999999999999999875432 1234678999999999999999 88888888875
Q ss_pred -EEEEE
Q psy2134 87 -VRAEL 91 (104)
Q Consensus 87 -V~a~~ 91 (104)
|...|
T Consensus 161 ~i~v~~ 166 (167)
T 1fxl_A 161 PITVKF 166 (167)
T ss_dssp CCEEEE
T ss_pred ceEEEe
Confidence 55543
No 46
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.67 E-value=6.8e-08 Score=63.45 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=54.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|...+.+. ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 52 ~t~~~l~~~F~~~G~i~~~~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 112 (118)
T 2khc_A 52 FTDTDLASTFLPFGNVISAKVFIDKQTS----LSKCFGFVSFDNPDSAQVAIK---------------AMNGFQVGTKRL 112 (118)
T ss_dssp CCHHHHHHHTTTSCEEEEEEECCCSSSS----CCCCEEEEEEESSHHHHHHHH---------------HCCCCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCC----CcCcEEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence 3467899999999999999998654321 224568999999999999999 999999999999
Q ss_pred EEEE
Q psy2134 88 RAEL 91 (104)
Q Consensus 88 ~a~~ 91 (104)
++++
T Consensus 113 ~V~~ 116 (118)
T 2khc_A 113 KVQL 116 (118)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 8875
No 47
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=6.3e-08 Score=62.00 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=56.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...... ....+..||+|.+.++|.+|+. .|||..|.|+.|
T Consensus 20 ~~~~~l~~~f~~~G~i~~~~i~~~~~~----g~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 80 (104)
T 1p1t_A 20 ATEEQLKDIFSEVGPVVSFRLVYDRET----GKPKGYGFCEYQDQETALSAMR---------------NLNGREFSGRAL 80 (104)
T ss_dssp SCHHHHHHHHHTTSCCSEEEEEEETTT----TEEEEEEEEECSCHHHHHHHHH---------------HSSSBSCSSSCB
T ss_pred CCHHHHHHHHHhcCCeeEEEEEeCCCC----CccceEEEEEECCHHHHHHHHH---------------HhCCCeeCCcEE
Confidence 446789999999999999999876432 1235679999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 81 ~v~~a~~ 87 (104)
T 1p1t_A 81 RVDNAAS 87 (104)
T ss_dssp EEEETTC
T ss_pred EEEeCCC
Confidence 9987654
No 48
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.66 E-value=8.6e-08 Score=60.14 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=55.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|..+.. ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 20 ~t~~~l~~~f~~~G~v~~~~i~~~~g------~~~g~afV~f~~~~~a~~a~~---------------~l~g~~~~g~~l 78 (92)
T 2dgv_A 20 FTWKMLKDKFNECGHVLYADIKMENG------KSKGCGVVKFESPEVAERACR---------------MMNGMKLSGREI 78 (92)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEESSS------CEEEEEEEEESSHHHHHHHHH---------------HHTTCCBTTBCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEccCC------CcceEEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence 34688999999999999999986321 234678999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 79 ~v~~a~~ 85 (92)
T 2dgv_A 79 DVRIDRN 85 (92)
T ss_dssp CCEECSC
T ss_pred EEEEcCC
Confidence 9887644
No 49
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=8.2e-08 Score=60.65 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=56.5
Q ss_pred eehhHHHHHhhhCCceeEE-EEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDDEAYGQVEKV-VIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV-~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.-++|+++-+++||.|.+| .|..++... ...+-.||+|.+.++|.+|+. .|||..+.|+.
T Consensus 17 ~t~~~l~~~F~~~G~i~~~~~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~ 77 (96)
T 1x5t_A 17 IDEKLLYDTFSAFGVILQTPKIMRDPDTG----NSKGYAFINFASFDASDAAIE---------------AMNGQYLCNRP 77 (96)
T ss_dssp CCHHHHHHHHHTTSCBSSCCEECCCTTTC----SCCSEEEEEBSSHHHHHHHHH---------------TTTTCEETTEE
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEEcCCCC----CcCeEEEEEECCHHHHHHHHH---------------HcCCCEECCEE
Confidence 3468899999999999998 887653321 123568999999999999999 99999999999
Q ss_pred EEEEEeccc
Q psy2134 87 VRAELYDQS 95 (104)
Q Consensus 87 V~a~~yd~~ 95 (104)
|.+.+-...
T Consensus 78 l~v~~a~~~ 86 (96)
T 1x5t_A 78 ITVSYAFKK 86 (96)
T ss_dssp CEEEESCCC
T ss_pred EEEEEeccc
Confidence 999987543
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=9.7e-08 Score=61.34 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=55.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|... . ....+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~-~-----g~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 85 (103)
T 2d9p_A 27 IDDERLRKAFSPFGTITSAKVMME-G-----GRSKGFGFVCFSSPEEATKAVT---------------EMNGRIVATKPL 85 (103)
T ss_dssp CCHHHHHHTTTTTSCEEEEEEEEC-S-----SSEEEEEEEEESSHHHHHHHHH---------------HHTTCBSSSSBC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEcC-C-----CCcCEEEEEEECCHHHHHHHHH---------------HhCCCEeCCcEE
Confidence 346788989999999999999875 1 1234678999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 86 ~V~~a~~ 92 (103)
T 2d9p_A 86 YVALAQR 92 (103)
T ss_dssp EEEECSS
T ss_pred EEEEecc
Confidence 9998654
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.65 E-value=1.4e-07 Score=60.00 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=57.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|........ .....+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 17 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~g-t~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 80 (98)
T 2cpf_A 17 TTEETLKGVFSKVGAIKSCTISKKKNKAG-VLLSMGFGFVEYKKPEQAQKALK---------------QLQGHTVDGHKL 80 (98)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEEEECTTC-CEEEEEEEEEEESSHHHHHHHHH---------------HSTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCC-CcCcccEEEEEECCHHHHHHHHH---------------HhCCCeeCCeEE
Confidence 34678899999999999999987543110 00234679999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 81 ~V~~a~~~ 88 (98)
T 2cpf_A 81 EVRISERA 88 (98)
T ss_dssp EEECSSCS
T ss_pred EEEEccCC
Confidence 99876543
No 52
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.65 E-value=1e-07 Score=64.00 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=53.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--e
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--R 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R 85 (104)
.-.+|+++-+++||.|..|.|+..+... ...+..||+|.+.++|.+|+. .|||+.+.| +
T Consensus 101 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~~ 161 (168)
T 1b7f_A 101 ITDDQLDTIFGKYGSIVQKNILRDKLTG----RPRGVAFVRYNKREEAQEAIS---------------ALNNVIPEGGSQ 161 (168)
T ss_dssp CCHHHHHHHHTSSSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCCCTTCSS
T ss_pred CCHHHHHHhhhcCCcEEEEEEEEcCCCC----CcceEEEEEECCHHHHHHHHH---------------HhcCCEecCCCe
Confidence 3467899999999999999998765321 234678999999999999999 888888877 8
Q ss_pred EEEEEE
Q psy2134 86 MVRAEL 91 (104)
Q Consensus 86 ~V~a~~ 91 (104)
.|...|
T Consensus 162 ~l~V~~ 167 (168)
T 1b7f_A 162 PLSVRL 167 (168)
T ss_dssp CCEEEE
T ss_pred EEEEEe
Confidence 887764
No 53
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1.3e-07 Score=58.55 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=51.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh-cCceeCCeE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL-NGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L-nGR~F~GR~ 86 (104)
.-.+|+++-+++||.|.+|.|...+ +..||+|.+.++|.+|+. .| ||..+.|+.
T Consensus 24 ~t~~~l~~~f~~~G~i~~~~~~~~k----------g~afV~f~~~~~A~~a~~---------------~l~~~~~~~g~~ 78 (85)
T 2ytc_A 24 ITETDLRNHFYQFGEIRTITVVQRQ----------QCAFIQFATRQAAEVAAE---------------KSFNKLIVNGRR 78 (85)
T ss_dssp SCHHHHHHHHHTTSCEEEEEEEGGG----------TEEEEEESSHHHHHHHHH---------------TTTTTCEETTEE
T ss_pred CCHHHHHHHHHhCCCEeEEEEECCC----------CEEEEEECCHHHHHHHHH---------------HhcCCeeECCCE
Confidence 3467888899999999999998632 368999999999999999 88 999999999
Q ss_pred EEEEE
Q psy2134 87 VRAEL 91 (104)
Q Consensus 87 V~a~~ 91 (104)
+...+
T Consensus 79 l~v~~ 83 (85)
T 2ytc_A 79 LNVKW 83 (85)
T ss_dssp CCEEE
T ss_pred EEEEe
Confidence 98775
No 54
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.65 E-value=1.2e-07 Score=63.29 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=54.1
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-.++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 75 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 135 (140)
T 2ku7_A 75 VDDKVLHAAFIPFGDITDIQIPLDYETE----KHRGFAFVEFELAEDAAAAID---------------NMNESELFGRTI 135 (140)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCCCTTTC----CCCSEEEEEESCHHHHHHHHH---------------HSTEEEETTEEE
T ss_pred CCHHHHHHHHHhcCCEEEEEEeecCCCC----CcCcEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence 4468899999999999999987764321 234568999999999999999 999999999999
Q ss_pred EEEE
Q psy2134 88 RAEL 91 (104)
Q Consensus 88 ~a~~ 91 (104)
.+.+
T Consensus 136 ~v~~ 139 (140)
T 2ku7_A 136 RVNL 139 (140)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8864
No 55
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.65 E-value=1.5e-07 Score=61.03 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=55.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|....... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 38 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l 98 (110)
T 1oo0_B 38 AQEDEIQEKFCDYGEIKNIHLNLDRRTG----FSKGYALVEYETHKQALAAKE---------------ALNGAEIMGQTI 98 (110)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCBCTTTS----SBCSEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHH---------------HcCCCEECCcEE
Confidence 3467889999999999999987654321 123568999999999999999 999999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 99 ~V~~a~ 104 (110)
T 1oo0_B 99 QVDWCF 104 (110)
T ss_dssp EEEESE
T ss_pred EEEEcc
Confidence 998754
No 56
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=4.9e-08 Score=62.74 Aligned_cols=68 Identities=25% Similarity=0.295 Sum_probs=56.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...+.+. ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 25 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 85 (103)
T 2dnm_A 25 TSPDSLRRVFEKYGRVGDVYIPREPHTK----APRGFAFVRFHDRRDAQDAEA---------------AMDGAELDGREL 85 (103)
T ss_dssp CCHHHHHHHHTTTSCEEEEECCBCSSSC----SBCSCEEEEESSSSHHHHHHH---------------HHSSCCBTTBCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCC----CCCeEEEEEECCHHHHHHHHH---------------HcCCCEECCcEE
Confidence 3467899999999999999988754321 123468999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 86 ~V~~a~~ 92 (103)
T 2dnm_A 86 RVQVARY 92 (103)
T ss_dssp EEEECSS
T ss_pred EEEECCc
Confidence 9998654
No 57
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=2.1e-07 Score=58.61 Aligned_cols=61 Identities=26% Similarity=0.297 Sum_probs=53.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=.+|+++-+++||.|.+|.|... ..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 21 ~t~~~l~~~F~~~G~v~~~~~~~~------------~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 73 (90)
T 2dnp_A 21 CTSQELRSLFERRGRVIECDVVKD------------YAFVHMEKEADAKAAIA---------------QLNGKEVKGKRI 73 (90)
T ss_dssp CCHHHHHHHHHHHSCEEEEEECSS------------CEEEEESCHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHcCCCEEEEEEECC------------EEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence 346788989999999999988742 48999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+....
T Consensus 74 ~v~~a~~~ 81 (90)
T 2dnp_A 74 NVELSTKG 81 (90)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99987654
No 58
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.64 E-value=1.1e-07 Score=60.78 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=54.3
Q ss_pred eehhHHHHHhhhCCceeE--------EEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcC
Q psy2134 8 VIYNEKQSDDEAYGQVEK--------VVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~k--------V~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnG 79 (104)
.-++|+++-+++||.|.+ |.|...+.+ ....+-.||+|.+.++|.+|+. .|||
T Consensus 25 ~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~----g~~~G~afV~f~~~~~a~~Ai~---------------~l~g 85 (99)
T 2la6_A 25 VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET----GKLKGEATVSFDDPPSAKAAID---------------WFDG 85 (99)
T ss_dssp CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTT----CSEEEEEEEEBSSHHHHHHHHH---------------HHTT
T ss_pred CCHHHHHHHHHHhCCEeeccccccccEEEEecCCC----CCeeeEEEEEECCHHHHHHHHH---------------HhCC
Confidence 346889999999999999 888876432 1235679999999999999999 9999
Q ss_pred ceeCCeEEEEEE
Q psy2134 80 RFFAGRMVRAEL 91 (104)
Q Consensus 80 R~F~GR~V~a~~ 91 (104)
..+.||.|.+.+
T Consensus 86 ~~~~g~~l~V~~ 97 (99)
T 2la6_A 86 KEFSGNPIKVSF 97 (99)
T ss_dssp CBSSSSBCEEEE
T ss_pred CEeCCcEEEEEe
Confidence 999999998875
No 59
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=8.8e-08 Score=61.56 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=56.1
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+++++-+++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 87 (105)
T 1x5u_A 27 VSEPLLWELFLQAGPVVNTHMPKDRVTG----QHQGYGFVEFLSEEDADYAIK---------------IMDMIKLYGKPI 87 (105)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCSSSC----SBCSCEEEEESSHHHHHHHHH---------------HSSSCBCSSCBC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC----cCCcEEEEEECCHHHHHHHHH---------------HhCCCeECCeEE
Confidence 3467889999999999999988765321 123468999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 88 ~v~~a~~ 94 (105)
T 1x5u_A 88 RVNKASA 94 (105)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9997654
No 60
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=2e-07 Score=58.88 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=53.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|... ..||+|.+.++|.+|+. .|||..+.|+.+
T Consensus 22 ~t~~~l~~~F~~~G~v~~v~~~~~------------~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 74 (92)
T 2dgt_A 22 CTNQELRAKFEEYGPVIECDIVKD------------YAFVHMERAEDAVEAIR---------------GLDNTEFQGKRM 74 (92)
T ss_dssp CCHHHHHHHHHTTSCCCEEEECSS------------EEEEEESCHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEECC------------EEEEEECCHHHHHHHHH---------------HhCCCeeCCcEE
Confidence 346788999999999999988742 58999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 75 ~V~~a~~~ 82 (92)
T 2dgt_A 75 HVQLSTSR 82 (92)
T ss_dssp EEEESSCC
T ss_pred EEEEccCC
Confidence 99987543
No 61
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.63 E-value=1.4e-07 Score=63.55 Aligned_cols=69 Identities=23% Similarity=0.216 Sum_probs=57.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.+ ....+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 54 ~~~~~l~~~F~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 114 (139)
T 1u6f_A 54 VDEVQLRQLFERYGPIESVKIVCDRET----RQSRGYGFVKFQSGSSAQQAIA---------------GLNGFNILNKRL 114 (139)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEEEETTT----TEEEEEEEEEESSHHHHHHHHH---------------HTTTEECSSCEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEcCCC----CCcceEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence 346789999999999999999876542 1235679999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 115 ~v~~a~~~ 122 (139)
T 1u6f_A 115 KVALAASG 122 (139)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 99987543
No 62
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.63 E-value=1e-07 Score=64.69 Aligned_cols=64 Identities=17% Similarity=0.078 Sum_probs=54.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++++++=|+.||+|.++.|..++ |-.||+|.+.++|.+|++ +|||..+.||.|
T Consensus 19 ~te~~L~~lF~q~G~V~~~~l~~~k----------GfaFVey~~~~eA~~Ai~---------------~Ln~~~l~gr~I 73 (89)
T 2wbr_A 19 IDGPTLRTLCMQHGPLVSFHPYLNQ----------GIALCKYTTREEANKAQM---------------ALNNCVLANTTI 73 (89)
T ss_dssp CCCHHHHHHHHHHSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred CCHHHHHHHHHhhCCEEEEEEcCCC----------cEEEEEECCHHHHHHHHH---------------HhcCCEECCcEE
Confidence 3457788889999999999987632 468999999999999999 999999999999
Q ss_pred EEEEecccc
Q psy2134 88 RAELYDQSL 96 (104)
Q Consensus 88 ~a~~yd~~~ 96 (104)
++.+-.+++
T Consensus 74 ~V~~A~e~~ 82 (89)
T 2wbr_A 74 FAESPSENE 82 (89)
T ss_dssp EEECCCHHH
T ss_pred EEEECCHHH
Confidence 998875543
No 63
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.63 E-value=1.3e-07 Score=60.84 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=56.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecC-CCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh-cCceeCCe
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNE-KQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL-NGRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~-~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L-nGR~F~GR 85 (104)
.-++|+++-+++||.|.+|.|... ... ....+..||+|.+.++|.+|+. .| ||..|.|+
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~~g~afV~f~~~~~a~~A~~---------------~l~~~~~~~g~ 87 (107)
T 2cph_A 27 ANQREIRELFSTFGELKTVRLPKKMTGT----GAHRGFGFVDFITKQDAKKAFN---------------ALCHSTHLYGR 87 (107)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCCCCSSS----CSSCSEEEEEESSHHHHHHHHH---------------HHHTCCBSSSC
T ss_pred CCHHHHHHHHHccCCeEEEEEecCCCCC----CCcCceEEEEECCHHHHHHHHH---------------HhccCCeECCC
Confidence 346789999999999999998765 221 1223568999999999999999 89 89999999
Q ss_pred EEEEEEeccc
Q psy2134 86 MVRAELYDQS 95 (104)
Q Consensus 86 ~V~a~~yd~~ 95 (104)
.|.+.+-...
T Consensus 88 ~l~v~~a~~~ 97 (107)
T 2cph_A 88 RLVLEWADSE 97 (107)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEeCCCC
Confidence 9999987654
No 64
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.62 E-value=1.4e-07 Score=69.36 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=58.1
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++++++-+++||.|.+|.|.....+ ...+..||+|.+.++|.+|+. .|||+.+.|+.|.
T Consensus 198 ~~~~l~~~f~~~G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l~ 257 (284)
T 3smz_A 198 DVDALCRALSAVHSPTFCQLACGQDG-----QLKGFAVLEYETAEMAEEAQQ---------------QADGLSLGGSHLR 257 (284)
T ss_dssp CHHHHHHHTCSSSCCSEEEEEECSSC-----CEEEEEEEECSSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHhhCCCCeEEEEEEECCCC-----CcccEEEEEeCCHHHHHHHHH---------------HhCCCccCCeEEE
Confidence 36899999999999999998875431 235679999999999999999 9999999999999
Q ss_pred EEEecccc
Q psy2134 89 AELYDQSL 96 (104)
Q Consensus 89 a~~yd~~~ 96 (104)
+.+.....
T Consensus 258 v~~a~~~~ 265 (284)
T 3smz_A 258 VSFCAPGP 265 (284)
T ss_dssp EEECCSSS
T ss_pred EEEecCCC
Confidence 99986643
No 65
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.62 E-value=1.8e-07 Score=64.45 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=56.6
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-.+|+++.+++||.|.+|.|...+.. ....+..||+|.+.++|.+|+. .|||..+.||.|.
T Consensus 127 ~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 127 NDDQVKELLTSFGPLKAFNLVKDSAT----GLSKGYAFCEYVDINVTDQAIA---------------GLNGMQLGDKKLL 187 (198)
T ss_dssp CHHHHHHHHHTBSCEEEEEEEECTTT----CSEEEEEEEEESSSSHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHHHHcCCccEEEEeecCCC----CCcceEEEEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence 46789999999999999999876432 1235679999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
+.+-..
T Consensus 188 v~~a~~ 193 (198)
T 2yh0_A 188 VQRASV 193 (198)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 987644
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.62 E-value=7e-08 Score=60.86 Aligned_cols=67 Identities=21% Similarity=0.096 Sum_probs=54.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.++.|...... ..-.+-.||+|.+.++|.+|+. .|||..+.||.|
T Consensus 27 ~t~~~l~~~F~~~G~i~~~~~~~~~~~----g~~~g~afV~f~~~~~a~~Ai~---------------~l~g~~~~gr~l 87 (95)
T 2ek1_A 27 VSIDEILDFFYGYQVIPGSVCLKYNEK----GMPTGEAMVAFESRDEATAAVI---------------DLNDRPIGSRKV 87 (95)
T ss_dssp CCHHHHHHHTTTSCBCTTCCEEEECTT----SCEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCccceEEEEeCCC----CCEeeEEEEEECCHHHHHHHHH---------------HhCCCeECCcEE
Confidence 346789999999999987767654332 1234679999999999999999 999999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
...+.+
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 998754
No 67
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=9.3e-08 Score=62.97 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=55.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|...... ..+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 41 ~te~~l~~~F~~~G~i~~v~i~~~~~~------~kg~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l 99 (109)
T 2err_A 41 FRDPDLRQMFGQFGKILDVEIIFNERG------SKGFGFVTFENSADADRARE---------------KLHGTVVEGRKI 99 (109)
T ss_dssp CCHHHHHHHGGGTCCCSCEEECCBTTB------CTTEEEEECCCSHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCC------CceEEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence 446788999999999999999875431 23568999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9987643
No 68
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.61 E-value=1.8e-07 Score=62.24 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=56.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...... ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 47 ~t~~~l~~~F~~~G~v~~v~i~~~~~g-----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l 106 (124)
T 2kt5_A 47 VSDADIQELFAEFGTLKKAAVDYDRSG-----RSLGTADVHFERRADALKAMK---------------QYKGVPLDGRPM 106 (124)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEECCSSS-----SCCSEEEEEESSHHHHHHHHH---------------HHTTEESSSCEE
T ss_pred CCHHHHHHHHHhcCCeeEEEEEECCCC-----CEeeEEEEEECCHHHHHHHHH---------------HcCCCEECCcEE
Confidence 346889999999999999999876521 123568999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 107 ~V~~a~~ 113 (124)
T 2kt5_A 107 DIQLVAS 113 (124)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9987654
No 69
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.61 E-value=1.6e-07 Score=69.08 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=53.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC-CeE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA-GRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~-GR~ 86 (104)
.-.+|+++.+++||.|.+|.|..... +..||+|.+.++|.+|+. .|||+.|. |+.
T Consensus 219 ~~~~~l~~~F~~~G~i~~v~~~~~~~---------g~afV~f~~~~~A~~A~~---------------~l~g~~~~~g~~ 274 (282)
T 3pgw_A 219 TNELMLSMLFNQFPGFKEVRLVPGRH---------DIAFVEFDNEVQAGAARD---------------ALQGFKITQNNA 274 (282)
T ss_pred CCHHHHHHHHHhcCCeEEEEEecCCC---------cEEEEEeCCHHHHHHHHH---------------HcCCcEeCCCCE
Confidence 34689999999999999999985432 468999999999999999 99999999 999
Q ss_pred EEEEEe
Q psy2134 87 VRAELY 92 (104)
Q Consensus 87 V~a~~y 92 (104)
|.+.|-
T Consensus 275 l~v~~a 280 (282)
T 3pgw_A 275 MKISFA 280 (282)
T ss_pred EEEEEe
Confidence 998863
No 70
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.61 E-value=9.5e-08 Score=63.38 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=55.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+... ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 34 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 94 (126)
T 3ex7_B 34 ATEEDIHDKFAEYGEIKNIHLNLDRRTG----YLKGYTLVEYETYKEAQAAME---------------GLNGQDLMGQPI 94 (126)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCTTTS----SBCSCEEEEESSHHHHHHHHH---------------HHTTCBSSSSBC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCeeCCeEE
Confidence 3467899999999999999987664321 123468999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 95 ~v~~a~~ 101 (126)
T 3ex7_B 95 SVDWCFV 101 (126)
T ss_dssp EEEESEE
T ss_pred EEEEecC
Confidence 9987643
No 71
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.61 E-value=1.1e-07 Score=62.82 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=56.1
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...+.+. ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 38 ~te~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~F~~~~~A~~Ai~---------------~l~g~~i~g~~l 98 (108)
T 2jrs_A 38 ITEDMLRGIFEPFGRIESIQLMMDSETG----RSKGYGFITFSDSECAKKALE---------------QLNGFELAGRPM 98 (108)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEEETTTT----EEEEEEEEEESCHHHHHHHHH---------------HHTTCCSSSSCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence 4467899999999999999998764421 234679999999999999999 999999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 99 ~V~~a~ 104 (108)
T 2jrs_A 99 KVGHVT 104 (108)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 988653
No 72
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.61 E-value=2.9e-07 Score=63.35 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=57.5
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.+. ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 51 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l 111 (156)
T 1h2v_Z 51 TTEEQIYELFSKSGDIKKIIMGLDKMKK----TACGFCFVEYYSRADAENAMR---------------YINGTRLDDRII 111 (156)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HTTTSEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence 4568899999999999999998765421 234678999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 112 ~V~~a~~ 118 (156)
T 1h2v_Z 112 RTDWDAG 118 (156)
T ss_dssp EEEEESC
T ss_pred EEEECCC
Confidence 9998643
No 73
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.60 E-value=2.1e-07 Score=66.79 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=55.8
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=.+|+++-+++||.|..|.|...... ..+-.||+|.+.++|.+|+. .|||..+.||.|.
T Consensus 116 t~~~l~~~F~~~G~i~~~~i~~d~~~------~~g~~fV~f~~~~~a~~Ai~---------------~lng~~~~g~~i~ 174 (213)
T 4f02_A 116 DNKALYDTFSAFGNILSCKVVCDENG------SKGYGFVHFETQEAAERAIE---------------KMNGMLLNDRKVF 174 (213)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEEETTE------EEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred HHHHHHHHHhhcCCeEEEEeeccCCC------CceEEEEEeCCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence 36788999999999999999865431 35678999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
+.+...
T Consensus 175 V~~a~~ 180 (213)
T 4f02_A 175 VGRFKS 180 (213)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 988753
No 74
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.59 E-value=2.4e-07 Score=61.90 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=58.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 19 ~t~~~l~~~F~~~G~i~~v~i~~~~~g-----~~~g~afV~F~~~~~A~~Ai~---------------~l~g~~~~g~~l 78 (116)
T 2fy1_A 19 TNEKMLKAVFGKHGPISEVLLIKDRTS-----KSRGFAFITFENPADAKNAAK---------------DMNGKSLHGKAI 78 (116)
T ss_dssp CCHHHHHHHHHTSSCCSEEEEECSTTT-----TCCCEEEEECSSHHHHHHHHH---------------HCSSCBCSSSBC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCC-----CcccEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence 456888989999999999999876521 234578999999999999999 999999999999
Q ss_pred EEEEeccccc
Q psy2134 88 RAELYDQSLF 97 (104)
Q Consensus 88 ~a~~yd~~~f 97 (104)
.+.+-.....
T Consensus 79 ~V~~a~~~~~ 88 (116)
T 2fy1_A 79 KVEQAKKPSF 88 (116)
T ss_dssp EEEECCCSSC
T ss_pred EEEECCCCCC
Confidence 9998765443
No 75
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.59 E-value=2.5e-07 Score=60.54 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=53.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC---
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--- 84 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--- 84 (104)
.=++|+++-+++||.|..|.|... +..||+|.+.++|.+|+. .|||..+.|
T Consensus 27 ~t~~~l~~~F~~~G~i~~~~i~~~-----------g~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~~ 80 (108)
T 1x4c_A 27 GSWQDLKDHMREAGDVCYADVYRD-----------GTGVVEFVRKEDMTYAVR---------------KLDNTKFRSHEG 80 (108)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEETT-----------TEEEEEESSHHHHHHHHH---------------HSSSEEEECTTS
T ss_pred CCHHHHHHHHHhcCCEeEEEEecC-----------CEEEEEECCHHHHHHHHH---------------HHCcCCccCCcC
Confidence 346788989999999999999764 358999999999999999 899999999
Q ss_pred --eEEEEEEecc
Q psy2134 85 --RMVRAELYDQ 94 (104)
Q Consensus 85 --R~V~a~~yd~ 94 (104)
+.|.+.+-..
T Consensus 81 ~~~~i~V~~a~~ 92 (108)
T 1x4c_A 81 ETAYIRVKVDGP 92 (108)
T ss_dssp CEEEEEEEESSC
T ss_pred cceEEEEEeCCC
Confidence 9999987654
No 76
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.59 E-value=2.5e-07 Score=65.50 Aligned_cols=64 Identities=13% Similarity=0.243 Sum_probs=52.9
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--eE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--RM 86 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R~ 86 (104)
=++++++-+++||.|.+|+|+.... -...||+|.+.++|.+|++ +|||+.+.| +.
T Consensus 41 te~~L~~lFs~yG~V~~V~i~~~~~--------gfqAFVef~~~~~A~~Ai~---------------~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 41 TLDVLHQIFSKFGTVLKIITFTKNN--------QFQALLQYADPVSAQHAKL---------------SLDGQNIYNACCT 97 (130)
T ss_dssp CHHHHHHHHTTSSCEEEEEEEEETT--------EEEEEEEESCHHHHHHHHH---------------HHTTCEEETTEEE
T ss_pred CHHHHHHHHhCcCCEEEEEEEcCCC--------CcEEEEEECCHHHHHHHHH---------------HcCCCeecCCCcE
Confidence 3567888899999999999986321 1348999999999999999 999999887 89
Q ss_pred EEEEEeccc
Q psy2134 87 VRAELYDQS 95 (104)
Q Consensus 87 V~a~~yd~~ 95 (104)
++.+|-...
T Consensus 98 LrI~~ak~~ 106 (130)
T 3zzy_A 98 LRIDFSKLT 106 (130)
T ss_dssp EEEEECSCS
T ss_pred EEEEecCCC
Confidence 999886543
No 77
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.58 E-value=2.7e-07 Score=59.26 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=55.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC---
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--- 84 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--- 84 (104)
.-++|+++-+++||.|.+|.|...+. ....+-.||+|.+.++|.+|+. .|||..+.|
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~-----g~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~gg~~ 86 (105)
T 2dnh_A 27 QSEEDVLRLFQPFGVIDECTVLRGPD-----GSSKGCAFVKFSSHTEAQAAIH---------------ALHGSQTMPGAS 86 (105)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECSS-----SCEEEEEEEEESSHHHHHHHHH---------------HHSSCCCCTTCS
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCC-----CCcCcEEEEEeCCHHHHHHHHH---------------HHcCCccCCCCC
Confidence 34678898999999999999987642 1235679999999999999999 888988888
Q ss_pred eEEEEEEeccc
Q psy2134 85 RMVRAELYDQS 95 (104)
Q Consensus 85 R~V~a~~yd~~ 95 (104)
+.|.+.+-...
T Consensus 87 ~~l~V~~a~~~ 97 (105)
T 2dnh_A 87 SSLVVKFADTD 97 (105)
T ss_dssp SCCEEEESCSS
T ss_pred ccEEEEECccC
Confidence 99998876543
No 78
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=1.4e-07 Score=60.35 Aligned_cols=62 Identities=23% Similarity=0.256 Sum_probs=53.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|...+ +..||+|.+.++|.+|+. .|||..+.|+.+
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~~~~~k----------g~afV~f~~~~~a~~a~~---------------~l~g~~~~g~~l 81 (99)
T 2cpj_A 27 ITEEEMRKLFEKYGKAGEVFIHKDK----------GFGFIRLETRTLAEIAKV---------------ELDNMPLRGKQL 81 (99)
T ss_dssp CCHHHHHHHTSTTCCCSEEEEETTT----------TEEEEECSSSHHHHHHHH---------------HHTTCCBTTBCC
T ss_pred CCHHHHHHHHhhcCCeEEEEEecCC----------CEEEEEECCHHHHHHHHH---------------HhCCCEeCCceE
Confidence 3467889899999999999987542 368999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 82 ~v~~a~~ 88 (99)
T 2cpj_A 82 RVRFACH 88 (99)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 9988654
No 79
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=2.5e-07 Score=60.27 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=53.4
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=.+|+++-+++||.|.+|.|...+ +-.||+|.+.++|.+|+. .|||..+.|+.|.
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~----------g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 38 TDQLMRQTFSPFGQIMEIRVFPEK----------GYSFVRFSTHESAAHAIV---------------SVNGTTIEGHVVK 92 (109)
T ss_dssp CHHHHHHHHHHHSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHHHhcCCeEEEEEeCCC----------CEEEEEECCHHHHHHHHH---------------HcCCCEECCcEEE
Confidence 467888889999999999998752 368999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
+.+-..
T Consensus 93 v~~a~~ 98 (109)
T 1x4g_A 93 CYWGKE 98 (109)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 987654
No 80
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.57 E-value=1.5e-07 Score=69.22 Aligned_cols=65 Identities=14% Similarity=0.257 Sum_probs=53.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--e
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--R 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R 85 (104)
+=++++++-+++||.|.+|.|+.... -+..||+|.+.++|..|+. .|||+.+.| +
T Consensus 58 vted~L~~~Fs~fG~V~~V~i~~k~~--------rgfAFVeF~d~~~A~~Ai~---------------~LnG~~i~g~g~ 114 (164)
T 1sjr_A 58 VTLDVLHQIFSKFGTVLKIITFTKNN--------QFQALLQYADPVSAQHAKL---------------SLDGQNIYNACC 114 (164)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEEESSS--------CEEEEEEESCHHHHHHHHH---------------HSTTBCSSSSCS
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCC--------CCEEEEEECCHHHHHHHHH---------------HhCCCEecCCCc
Confidence 34578888999999999999975321 2568999999999999999 889998854 9
Q ss_pred EEEEEEeccc
Q psy2134 86 MVRAELYDQS 95 (104)
Q Consensus 86 ~V~a~~yd~~ 95 (104)
.++.+|-...
T Consensus 115 ~L~V~~Ak~~ 124 (164)
T 1sjr_A 115 TLRIDFSKLT 124 (164)
T ss_dssp CEEEEECSSS
T ss_pred EEEEEEecCC
Confidence 9998876543
No 81
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.57 E-value=2.9e-07 Score=59.60 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=51.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|.. +-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 35 ~t~~~L~~~F~~~G~v~~v~i~~------------g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l 87 (97)
T 2xnq_A 35 VSKEDLFRIFSPYGHIMQINIKN------------AFGFIQFDNPQSVRDAIE---------------XESQEMNFGKKL 87 (97)
T ss_dssp CCHHHHHHHHGGGSCEEEEEECS------------SEEEEEESSHHHHHHHHH---------------HHTTSEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEeC------------CEEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence 44678899999999999988841 358999999999999999 999999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 88 ~V~~a~ 93 (97)
T 2xnq_A 88 ILEVSS 93 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 998753
No 82
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.56 E-value=1.1e-07 Score=60.16 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=51.2
Q ss_pred hhHHH----HHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 10 YNEKQ----SDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 10 ~~ev~----~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
.+|++ +-+++||.|.+|.|..... ..+..||+|.+.++|..|+. .|||..+.|+
T Consensus 22 ~~~l~~~l~~~f~~~G~i~~v~i~~~~~-------~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~ 79 (97)
T 1nu4_A 22 KDELKKSLHAIFSRFGQILDILVSRSLK-------MRGQAFVIFKEVSSATNALR---------------SMQGFPFYDK 79 (97)
T ss_dssp HHHHHHHHHHHHGGGSCEEEEECCHHHH-------HTTCEEEEESSHHHHHHHHH---------------HHTTCEETTE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEcCCC-------cCcEEEEEeCCHHHHHHHHH---------------HhCCCEECCc
Confidence 45555 8899999999988863211 12458999999999999999 9999999999
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.+.+.+-..
T Consensus 80 ~l~v~~a~~ 88 (97)
T 1nu4_A 80 PMRIQYAKT 88 (97)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEccC
Confidence 999987654
No 83
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.56 E-value=2.6e-07 Score=62.15 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=51.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC---C
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA---G 84 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~---G 84 (104)
.-.+|+++.+++||.|.+|.|...... ...+-.||+|.+.++|.+|+. .|||+.+. |
T Consensus 107 ~t~~~l~~~F~~~G~i~~v~~~~~~~g-----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~~g~~ 166 (175)
T 3nmr_A 107 CTENDIRVMFSSFGQIEECRILRGPDG-----LSRGCAFVTFTTRAMAQTAIK---------------AMHQAQTMEGCS 166 (175)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTS-----CEEEEEEEEESSHHHHHHHHH---------------HHTTSCCCTTCS
T ss_pred CCHHHHHHHHHhCCCEEEEEEEECCCC-----CEEEEEEEEECCHHHHHHHHH---------------HhcCCcccCCCC
Confidence 346889999999999999999876431 234668999999999999999 77777555 4
Q ss_pred eEEEEEEe
Q psy2134 85 RMVRAELY 92 (104)
Q Consensus 85 R~V~a~~y 92 (104)
|.|.+.|-
T Consensus 167 ~~l~V~~a 174 (175)
T 3nmr_A 167 SPMVVKFA 174 (175)
T ss_dssp SCCEEEEC
T ss_pred CCeEEEec
Confidence 88888764
No 84
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=2.3e-07 Score=59.12 Aligned_cols=62 Identities=10% Similarity=0.196 Sum_probs=52.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC--Ce
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA--GR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~--GR 85 (104)
.=++|+++-+++||.|.+|.|... .+..||+|.+.++|.+|+. .|||..+. |+
T Consensus 29 ~t~~~l~~~F~~~G~v~~v~~~~~----------~g~afV~f~~~~~A~~A~~---------------~l~g~~~~~~g~ 83 (97)
T 1why_A 29 TSLAALAREFDRFGSIRTIDHVKG----------DSFAYIQYESLDAAQAACA---------------KMRGFPLGGPDR 83 (97)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSS----------SCCEEEEESSHHHHHHHHH---------------HHTTCBCSSSSC
T ss_pred CCHHHHHHHHHhcCCeeEEEEeCC----------CCEEEEEECCHHHHHHHHH---------------HHCCCEeCCCCc
Confidence 346788989999999999888753 1358999999999999999 99999999 99
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.+.+.+-..
T Consensus 84 ~l~V~~a~~ 92 (97)
T 1why_A 84 RLRVDFAKS 92 (97)
T ss_dssp BCEEEECCC
T ss_pred EEEEEECCC
Confidence 999987643
No 85
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.56 E-value=6.5e-07 Score=59.53 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=56.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|...+.+ ...+-.||+|.+.++|.+|+. .|||..+.|+.+
T Consensus 12 ~t~~~l~~~f~~~G~i~~v~i~~~~~~-----~~~g~afV~f~~~~~a~~A~~---------------~l~~~~~~g~~i 71 (166)
T 3md3_A 12 ITEDILKQYFQVGGPIANIKIMIDKNN-----KNVNYAFVEYHQSHDANIALQ---------------TLNGKQIENNIV 71 (166)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEECCCC------CCEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCC-----CCCCEEEEEeCCHHHHHHHHH---------------HcCCCccCCCee
Confidence 346788999999999999999876542 235679999999999999999 899999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
...+...
T Consensus 72 ~v~~~~~ 78 (166)
T 3md3_A 72 KINWAFQ 78 (166)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9987644
No 86
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=3e-07 Score=59.39 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=56.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc------Cce
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN------GRF 81 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln------GR~ 81 (104)
.-++|+++-+++||.|..|.|...+.+. ...+-.||+|.+.++|.+|+. .|| |..
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~~~~~~~~~~~~ 87 (111)
T 1x4h_A 27 SEEEALGEVLQQFGDLKYVRVVLHPDTE----HSKGCAFAQFMTQEAAQKCLA---------------AASLEAEGGGLK 87 (111)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCSSSC----CBCSEEEEEESSHHHHHHHHH---------------HHCTTTTTCCEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC----CCccEEEEEECCHHHHHHHHH---------------HhccccccCCcE
Confidence 4467899999999999999998754421 124568999999999999999 888 999
Q ss_pred eCCeEEEEEEeccc
Q psy2134 82 FAGRMVRAELYDQS 95 (104)
Q Consensus 82 F~GR~V~a~~yd~~ 95 (104)
+.|+.|.+.+....
T Consensus 88 ~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 88 LDGRQLKVDLAVTR 101 (111)
T ss_dssp SSSCEEEEECCCCC
T ss_pred EcCEEEEEEECCCC
Confidence 99999999876543
No 87
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=3.4e-07 Score=60.06 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=54.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+... .-.+-.||+|.+.++|.+|+. .||| .|.|+.|
T Consensus 29 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~Ai~---------------~~~~-~~~g~~l 88 (116)
T 2cqd_A 29 TTDASLRKYFEGFGDIEEAVVITDRQTG----KSRGYGFVTMADRAAAERACK---------------DPNP-IIDGRKA 88 (116)
T ss_dssp CCHHHHHHHHHTTSCEEEEEESCCSSSC----CCCSEEEEEESSHHHHHHHHT---------------CSSC-EETTEEC
T ss_pred CCHHHHHHHHHhCCCeeEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHH---------------hCCC-cCCCEEE
Confidence 3467899999999999999998765421 123568999999999999999 9998 8999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 89 ~V~~a~ 94 (116)
T 2cqd_A 89 NVNLAY 94 (116)
T ss_dssp EEEEST
T ss_pred EEEEcc
Confidence 999863
No 88
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.55 E-value=1.4e-07 Score=65.37 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=51.0
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
|.+.+.+-+++||.|++|.|.....+ .|..||+|.+.++|..|+. .|||..+.||.|.
T Consensus 46 L~~~L~~~F~~~G~I~~v~i~~~~~~-------rG~aFV~F~~~~~A~~Ai~---------------~lng~~l~gr~l~ 103 (127)
T 2a3j_A 46 LQALLYALASSQGDILDIVVDLSDDN-------SGKAYIVFATQESAQAFVE---------------AFQGYPFQGNPLV 103 (127)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCCSS-------CCCEEEEESSHHHHHHHHH---------------HSTTCCCTTSCCE
T ss_pred HHHHHHHHhccCCCeEEEEeccCCCc-------CCEEEEEECCHHHHHHHHH---------------HHCCCEeCCCEEE
Confidence 44445566899999999888653221 3468999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
..+-..
T Consensus 104 V~~a~~ 109 (127)
T 2a3j_A 104 ITFSET 109 (127)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 987543
No 89
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.55 E-value=8.7e-08 Score=60.73 Aligned_cols=68 Identities=9% Similarity=0.102 Sum_probs=54.1
Q ss_pred eehhHHHHHhhhCC--ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 8 VIYNEKQSDDEAYG--QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG--~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
.-++|+++-+++|| .|.+|.|...+.+. ...+-.||+|.+.++|.+|+. .|||..+.||
T Consensus 13 ~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g----~~kG~afV~f~~~~~a~~Ai~---------------~l~g~~~~gr 73 (90)
T 3p5t_L 13 TTDEDLTEAVHSLGVNDILEIKFFENRANG----QSKGFALVGVGSEASSKKLMD---------------LLPKRELHGQ 73 (90)
T ss_dssp CCHHHHHHHHHTTTCCCCCCEEEEECTTTC----CEEEEEEECC-CHHHHHHHHH---------------HGGGSCSSSC
T ss_pred CCHHHHHHHHHHhCCCceEEEEEEecCCCC----ccCcEEEEEECCHHHHHHHHH---------------HcCCCeeCCE
Confidence 34678999999999 99999998765421 234678999999999999999 9999999999
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.|.+.+...
T Consensus 74 ~i~V~~~~~ 82 (90)
T 3p5t_L 74 NPVVTPSNK 82 (90)
T ss_dssp CCEECCC--
T ss_pred EEEEEECCC
Confidence 999876543
No 90
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.55 E-value=4.8e-07 Score=58.35 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=53.1
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|... ..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 23 ~t~~~l~~~F~~~G~i~~v~~~~~------------~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 75 (103)
T 2dgu_A 23 VTEEILEKAFSQFGKLERVKKLKD------------YAFIHFDERDGAVKAME---------------EMNGKDLEGENI 75 (103)
T ss_dssp CCHHHHHHHHHHHSCEEEEEECSS------------CEEEEESSHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred CCHHHHHHHHHhcCCEEEEEEECC------------EEEEEeCCHHHHHHHHH---------------HHCCCccCCCEE
Confidence 346788888999999999888742 47999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+....
T Consensus 76 ~v~~a~~~ 83 (103)
T 2dgu_A 76 EIVFAKPP 83 (103)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99987543
No 91
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.54 E-value=2.1e-07 Score=61.60 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=52.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|.. +-.||+|.+.++|.+|+. .|||..+.|+.+
T Consensus 43 ~t~~~L~~~F~~~G~i~~v~i~k------------g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l 95 (108)
T 2jvo_A 43 VQESELNEIFGPFGPMKEVKILN------------GFAFVEFEEAESAAKAIE---------------EVHGKSFANQPL 95 (108)
T ss_dssp CCHHHHHHHHTTTSCCCEEEEET------------TEEEEECSSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEC------------CEEEEEECCHHHHHHHHH---------------HcCCCEECCeEE
Confidence 34678999999999999999871 358999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 96 ~V~~a~~ 102 (108)
T 2jvo_A 96 EVVYSKL 102 (108)
T ss_dssp EEESCSC
T ss_pred EEEEecC
Confidence 9987644
No 92
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=3.1e-07 Score=58.39 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=55.7
Q ss_pred eehhHHHHHhhhCCcee-EEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDDEAYGQVE-KVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~-kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.-++|+++-+++||.|. +|.|...+... ...+-.||+|.+.++|.+|+. .|||..+.|+.
T Consensus 21 ~t~~~l~~~F~~~G~i~~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~ 81 (99)
T 2div_A 21 MDENFISRAFATMGETVMSVKIIRNRLTG----IPAGYCFVEFADLATAEKCLH---------------KINGKPLPGAT 81 (99)
T ss_dssp CCHHHHHHHHHHTTCCCCEEEEEECSSSC----CEEEEEEEECSCHHHHHHHHH---------------TTTTSEESSCS
T ss_pred CCHHHHHHHHHHhCCcceEEEEeecCCCC----CcCCEEEEEeCCHHHHHHHHH---------------HHcCCccCCCC
Confidence 45688999999999999 99998765321 234678999999999999999 99999999998
Q ss_pred ----EEEEEecc
Q psy2134 87 ----VRAELYDQ 94 (104)
Q Consensus 87 ----V~a~~yd~ 94 (104)
++..+-..
T Consensus 82 ~~~~l~v~~a~~ 93 (99)
T 2div_A 82 PAKRFKLNYATY 93 (99)
T ss_dssp SCEECCEEETTC
T ss_pred cceeEEEeecCC
Confidence 88776543
No 93
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.54 E-value=1.9e-07 Score=63.86 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=55.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 58 ~te~~L~~~F~~~G~I~~v~i~~d~~tg----~~~G~afV~F~~~~~A~~Ai~---------------~lng~~i~g~~l 118 (129)
T 2kxn_B 58 TTERDLREVFSKYGPIADVSIVYDQQSR----RSRGFAFVYFENVDDAKEAKE---------------RANGMELDGRRI 118 (129)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEECCSSSS----CCCCEEEEEESCHHHHHHHHH---------------HHTTCCSSSSCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence 3467899999999999999998764321 234568999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 119 ~V~~a~~ 125 (129)
T 2kxn_B 119 RVDFSIT 125 (129)
T ss_dssp EESCCSS
T ss_pred EEEEecC
Confidence 9876543
No 94
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=3.6e-07 Score=61.09 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=54.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc--eeCCe
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR--FFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR--~F~GR 85 (104)
.-++|+++-+++||.|.+|.|...+ +..||+|.+.++|.+|+. .|||. .+.||
T Consensus 27 ~te~~L~~~F~~fG~V~~v~i~~~k----------g~aFVef~~~~~A~~Ai~---------------~l~~~~~~i~Gr 81 (104)
T 1wex_A 27 VVEADLVEALEKFGTICYVMMMPFK----------RQALVEFENIDSAKECVT---------------FAADVPVYIAGQ 81 (104)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHHHSCCBSSSS
T ss_pred CCHHHHHHHHHhCCCEEEEEEECCC----------CEEEEEECCHHHHHHHHH---------------HhccCCceECCE
Confidence 3468899999999999999887532 358999999999999999 77665 48999
Q ss_pred EEEEEEecccccc
Q psy2134 86 MVRAELYDQSLFD 98 (104)
Q Consensus 86 ~V~a~~yd~~~f~ 98 (104)
.|...|-......
T Consensus 82 ~l~V~~a~~~~~~ 94 (104)
T 1wex_A 82 QAFFNYSTSKRIT 94 (104)
T ss_dssp BCEEEECSSSSCC
T ss_pred EEEEEEccCcccc
Confidence 9999987655443
No 95
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.53 E-value=3.2e-07 Score=62.78 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=57.1
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|..++.+. ...+-.||+|.+.++|.+|+. .|||..+.||.|
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 142 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTK----ESRGFAFVRFHDKRDAEDAMD---------------AMDGAVLDGREL 142 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCT----TSCCEEEEEESBHHHHHHHHH---------------HSTTEESSSSEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence 4578899999999999999988764321 234568999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 143 ~v~~a~~~ 150 (158)
T 2kn4_A 143 RVQMARYG 150 (158)
T ss_dssp EEEEECCS
T ss_pred EEEECCCC
Confidence 99987543
No 96
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.52 E-value=1.7e-07 Score=59.57 Aligned_cols=66 Identities=23% Similarity=0.122 Sum_probs=53.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|..+.|...... ..-.+..||+|.+.++|.+|+. .|||..+.||.|
T Consensus 27 ~t~~~l~~~F~~~G~v~~~~~~~~~~~----g~~~g~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~l 87 (98)
T 2cqp_A 27 VSIDEILDFFYGYQVIPGSVCLKYNEK----GMPTGEAMVAFESRDEATAAVI---------------DLNDRPIGSRKV 87 (98)
T ss_dssp CCHHHHHHHTTTSCCCTTTCEEEECSS----SCEEEEEEEEESCHHHHHHHHH---------------HTTTCEETTEEC
T ss_pred CCHHHHHHHHHHcCCccceEEEEECCC----CCeeeEEEEEECCHHHHHHHHH---------------HhCCCeeCCeEE
Confidence 346788989999999987666544332 1234679999999999999999 999999999999
Q ss_pred EEEEe
Q psy2134 88 RAELY 92 (104)
Q Consensus 88 ~a~~y 92 (104)
...+-
T Consensus 88 ~V~~a 92 (98)
T 2cqp_A 88 KLVLG 92 (98)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 99874
No 97
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=5.6e-07 Score=57.51 Aligned_cols=61 Identities=26% Similarity=0.294 Sum_probs=52.5
Q ss_pred eehhHHHHHhhhC--CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 8 VIYNEKQSDDEAY--GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~ky--G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
.-.+|+++-+++| |.|.+|.+.. +-.||+|.+.++|.+|+. .|||..+.|+
T Consensus 27 ~t~~~l~~~F~~~g~g~v~~~~~~~------------g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~ 79 (99)
T 2cpd_A 27 TSEEMIEKEFNNIKPGAVERVKKIR------------DYAFVHFSNREDAVEAMK---------------ALNGKVLDGS 79 (99)
T ss_dssp CCHHHHHHHHHTTSTTCEEEEEECS------------SEEEEEESSHHHHHHHHH---------------HHSSEEETTE
T ss_pred CCHHHHHHHHHhcCCcceEEEEEeC------------CeEEEEeCCHHHHHHHHH---------------HhCCCEeCCc
Confidence 3467889899999 9999987753 258999999999999999 9999999999
Q ss_pred EEEEEEeccc
Q psy2134 86 MVRAELYDQS 95 (104)
Q Consensus 86 ~V~a~~yd~~ 95 (104)
.|.+.+-...
T Consensus 80 ~l~v~~a~~~ 89 (99)
T 2cpd_A 80 PIEVTLAKPV 89 (99)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999976543
No 98
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=2.7e-07 Score=60.14 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=55.7
Q ss_pred eehhHHHHHhhhCCcee--------EEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcC
Q psy2134 8 VIYNEKQSDDEAYGQVE--------KVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~--------kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnG 79 (104)
.-.+|+++-+++||.|. +|.|+..+... ...+-.||+|.+.++|.+|+. .|||
T Consensus 27 ~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~---------------~l~g 87 (113)
T 2cpe_A 27 VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG----KPKGDATVSYEDPPTAKAAVE---------------WFDG 87 (113)
T ss_dssp CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTC----SBCSEEEEEBSSHHHHHHHHH---------------HHTT
T ss_pred CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCC----CeeeEEEEEECCHHHHHHHHH---------------HcCC
Confidence 34678999999999998 68888764321 224568999999999999999 9999
Q ss_pred ceeCCeEEEEEEecc
Q psy2134 80 RFFAGRMVRAELYDQ 94 (104)
Q Consensus 80 R~F~GR~V~a~~yd~ 94 (104)
..|.|+.|.+.+-..
T Consensus 88 ~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 88 KDFQGSKLKVSLARK 102 (113)
T ss_dssp CEETTEECEEECSSC
T ss_pred CccCCCEEEEEECCC
Confidence 999999999987644
No 99
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.51 E-value=1e-06 Score=58.65 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=56.4
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++||.|.+|.|...+.+. ...+-.||+|.+.++|.+|+. .|||..+.|+.+.
T Consensus 15 ~~~~l~~~f~~~G~i~~v~~~~~~~~~----~~~g~afV~f~~~~~A~~a~~---------------~l~~~~~~g~~l~ 75 (167)
T 1fxl_A 15 TQEEFRSLFGSIGEIESCKLVRDKITG----QSLGYGFVNYIDPKDAEKAIN---------------TLNGLRLQTKTIK 75 (167)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCC----cceeEEEEEECCHHHHHHHHH---------------HcCCCccCCceEE
Confidence 467888899999999999998765321 234679999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
+.+-..
T Consensus 76 v~~~~~ 81 (167)
T 1fxl_A 76 VSYARP 81 (167)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 987654
No 100
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.51 E-value=1.1e-07 Score=60.85 Aligned_cols=63 Identities=29% Similarity=0.310 Sum_probs=54.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+ .+-.||+|.+.++|.+|+. .|||..+.|+.+
T Consensus 12 ~t~~~l~~~F~~~G~i~~v~i~~~~---------~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 67 (101)
T 2hvz_A 12 AGKGELERAFSYYGPLRTVWIARNP---------PGFAFVEFEDPRDAEDAVR---------------GLDGKVICGSRV 67 (101)
T ss_dssp CSHHHHHHHHHHHCCCSEEEEESSS---------SSEEEEECSSHHHHHHHHH---------------HHHHSCSSSCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCC---------CCEEEEEECCHHHHHHHHH---------------HHCCCeECCcEE
Confidence 3467889999999999999998751 2368999999999999999 899999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 68 ~V~~a~~ 74 (101)
T 2hvz_A 68 RVELSTG 74 (101)
T ss_dssp EEEESSS
T ss_pred EEEEccC
Confidence 9998754
No 101
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.51 E-value=2.2e-07 Score=59.45 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=51.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+ +-.||+|.+.++|.+|+. .|||..+.|+.+
T Consensus 39 ~~~~~l~~~f~~~G~i~~~~~~~~~----------g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l 93 (101)
T 2la4_A 39 ATEADLIPLFQNFGFILDFKHYPEK----------GCCFIKYDTHEQAAVCIV---------------ALANFPFQGRNL 93 (101)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEETTT----------TEEEEECSSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred cCHHHHHHHHHhCCCEEEEEEecCC----------CEEEEEECCHHHHHHHHH---------------HhCCCeECCeEE
Confidence 4467889999999999999997422 358999999999999999 999999999998
Q ss_pred EEEEe
Q psy2134 88 RAELY 92 (104)
Q Consensus 88 ~a~~y 92 (104)
.+.+-
T Consensus 94 ~V~~a 98 (101)
T 2la4_A 94 RTGWG 98 (101)
T ss_dssp CCCBC
T ss_pred EEEec
Confidence 87653
No 102
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.51 E-value=2.3e-07 Score=59.66 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=55.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee---CC
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF---AG 84 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F---~G 84 (104)
.=++|+++-+++||.|.+|.|...+.+. ...+-.||+|.+.++|.+|+. .|||..+ .|
T Consensus 25 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~~~~g 85 (106)
T 2dgp_A 25 LDEKDLKPLFEEFGKIYELTVLKDRFTG----MHKGCAFLTYCERESALKAQS---------------ALHEQKTLPGMN 85 (106)
T ss_dssp CCHHHHHHHHHHHSCCCEEECCCCSSSC----SCCSEEEEEESSHHHHHHHHH---------------HHTTTCCCTTCS
T ss_pred CCHHHHHHHHHhcCCeeEEEEEecCCCC----CcceEEEEEECCHHHHHHHHH---------------HhcCCcccCCCC
Confidence 3467899999999999999987754321 123568999999999999999 8888887 88
Q ss_pred eEEEEEEeccc
Q psy2134 85 RMVRAELYDQS 95 (104)
Q Consensus 85 R~V~a~~yd~~ 95 (104)
+.|.+.+-...
T Consensus 86 ~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 RPIQVKPADSE 96 (106)
T ss_dssp SCCEEEECCCC
T ss_pred ceEEEEECCcc
Confidence 99999887543
No 103
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=6.5e-07 Score=56.33 Aligned_cols=61 Identities=25% Similarity=0.157 Sum_probs=52.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|.. +-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 20 ~t~~~l~~~F~~~G~i~~v~~~~------------g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 72 (90)
T 2dnq_A 20 ATEQEIRSLFEQYGKVLECDIIK------------NYGFVHIEDKTAAEDAIR---------------NLHHYKLHGVNI 72 (90)
T ss_dssp CCHHHHHHHHHTSSCEEEEEEET------------TEEEEEESSHHHHHHHHH---------------HHTTCBCSSCBC
T ss_pred CCHHHHHHHHHhCCCEEEEEEEC------------CEEEEEECCHHHHHHHHH---------------HhcCCccCCcEE
Confidence 34678898999999999999872 258999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+....
T Consensus 73 ~v~~a~~~ 80 (90)
T 2dnq_A 73 NVEASKNK 80 (90)
T ss_dssp EEECSSCC
T ss_pred EEEECCCC
Confidence 99986543
No 104
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.48 E-value=1.9e-07 Score=65.17 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=53.1
Q ss_pred eehhHHHHHhhhCC-ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC-Ce
Q psy2134 8 VIYNEKQSDDEAYG-QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA-GR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG-~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~-GR 85 (104)
.-.+++++.+++|| .|.+|.|.... .+..||+|.+.++|.+|+. .|||+.++ |+
T Consensus 132 ~~~~~l~~~f~~~G~~v~~v~i~~~~---------~g~afV~f~~~~~A~~A~~---------------~l~g~~~~~g~ 187 (198)
T 1qm9_A 132 VSEEDLKVLFSSNGGVVKGFKFFQKD---------RKMALIQMGSVEEAVQALI---------------DLHNHDLGENH 187 (198)
T ss_dssp CCHHHHHHHHHHTTSCCCEEEESSTT---------SSCEEEECSSHHHHHHHHH---------------HHTSSCCSSCC
T ss_pred CCHHHHHHHHHHcCCCceEEEEEeCC---------CcEEEEEeCCHHHHHHHHH---------------HhcCCccCCCC
Confidence 34688999999999 99999986532 1358999999999999999 89999999 99
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.|.+.|-..
T Consensus 188 ~l~v~~a~~ 196 (198)
T 1qm9_A 188 HLRVSFSKS 196 (198)
T ss_dssp SCCEEEECC
T ss_pred eEEEEeecc
Confidence 999887543
No 105
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.47 E-value=5.7e-07 Score=62.72 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=50.6
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--eE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--RM 86 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R~ 86 (104)
=++++++-+++||.|.+|+|+.. . |. ..||+|++.++|..|+. +|||+.+.| +.
T Consensus 38 t~~~L~~~Fs~yG~V~~v~i~~~-~-------Gf-~aFVef~~~~~A~~A~~---------------~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 38 TVDVLYTVCNPVGKVQRIVIFKR-N-------GI-QAMVEFESVLCAQKAKA---------------ALNGADIYAGCCT 93 (124)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEES-S-------SE-EEEEEESSHHHHHHHHH---------------HHTTCCCBTTBSE
T ss_pred CHHHHHHHHHhcCCEEEEEEEeC-C-------CC-EEEEEECCHHHHHHHHH---------------HhCCCEecCCCeE
Confidence 35788999999999999999752 1 21 48999999999999999 889988877 68
Q ss_pred EEEEEecc
Q psy2134 87 VRAELYDQ 94 (104)
Q Consensus 87 V~a~~yd~ 94 (104)
++..|-..
T Consensus 94 l~V~~Ak~ 101 (124)
T 2e5i_A 94 LKIEYARP 101 (124)
T ss_dssp EEEECCSC
T ss_pred EEEEEecC
Confidence 88887543
No 106
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=1.4e-06 Score=58.05 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=54.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh--cCceeCCe
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL--NGRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L--nGR~F~GR 85 (104)
.-++|+++-++.||.|.+|.|...+ +-.||+|.+.++|..|+. .| +|..+.||
T Consensus 27 ~te~~L~~~F~~fG~v~~v~i~~~k----------g~aFVef~~~~~A~~Ai~---------------~l~~~~~~~~Gr 81 (101)
T 2cq1_A 27 VTETEVIALGLPFGKVTNILMLKGK----------NQAFLELATEEAAITMVN---------------YYSAVTPHLRNQ 81 (101)
T ss_dssp CCHHHHHHTTTTTSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHHHSCCEETTE
T ss_pred CCHHHHHHHHHhcCCEEEEEEECCC----------CEEEEEECCHHHHHHHHH---------------HhccCCceECCc
Confidence 3467889899999999999887642 358999999999999999 65 46789999
Q ss_pred EEEEEEeccccccc
Q psy2134 86 MVRAELYDQSLFDH 99 (104)
Q Consensus 86 ~V~a~~yd~~~f~~ 99 (104)
.|.+.|-.......
T Consensus 82 ~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 82 PIYIQYSNHKELKT 95 (101)
T ss_dssp ECEEEECSCSSCCC
T ss_pred EEEEEEcCcccCcC
Confidence 99999876655443
No 107
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.47 E-value=1.7e-06 Score=53.75 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=51.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++++++-+++||.|.+|.|...+.+. ...+-.||+|.+.++|.+|+. . +|..+.|+.|
T Consensus 23 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~---------------~-~~~~~~g~~i 82 (87)
T 3s7r_A 23 TSKKDLKDYFTKFGEVVDCTIKMDPNTG----RSRGFGFILFKDAASVEKVLD---------------Q-KEHRLDGRVI 82 (87)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTTC----CEEEEEEEEESSTHHHHHHHH---------------S-SCEEETTEEE
T ss_pred CCHHHHHHHHHhCCCEEEEEEeecCCCC----ccccEEEEEECCHHHHHHHHH---------------h-CCCEECCEEE
Confidence 3467889999999999999998765421 234678999999999999998 5 6677899998
Q ss_pred EEEE
Q psy2134 88 RAEL 91 (104)
Q Consensus 88 ~a~~ 91 (104)
....
T Consensus 83 ~v~~ 86 (87)
T 3s7r_A 83 DPKK 86 (87)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8753
No 108
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.46 E-value=1.1e-06 Score=61.34 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=56.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+++++-+++||.|..|.|...+.+. ...+-.||+|.+.++|.+|+. .|||..|.|+.|
T Consensus 84 ~t~~~L~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l 144 (165)
T 1rk8_A 84 AQEDEIQEKFCDYGEIKNIHLNLDRRTG----FSKGYALVEYETHKQALAAKE---------------ALNGAEIMGQTI 144 (165)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTS----SEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHhhcCCCEEEEEEEecCCCC----cEeeEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence 3467889899999999999998764421 234678999999999999999 999999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 145 ~V~~a~ 150 (165)
T 1rk8_A 145 QVDWCF 150 (165)
T ss_dssp EEEESE
T ss_pred EEEEec
Confidence 998754
No 109
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.45 E-value=3e-07 Score=59.08 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=53.4
Q ss_pred eehhHHHHHhhhCC-ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc-CceeCCe
Q psy2134 8 VIYNEKQSDDEAYG-QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN-GRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG-~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln-GR~F~GR 85 (104)
.=++|+++-+++|| +|.+|.|...+.+. ...+-.||+|.+.++|.+|+. .|+ |-.+.||
T Consensus 13 ~te~~l~~~F~~~G~~v~~v~i~~d~~t~----~~rg~aFV~F~~~~~A~~Ai~---------------~~~~~~~~~gr 73 (91)
T 2lxi_A 13 ATEDDIRGQLQSHGVQAREVRLMRNKSSG----QSRGFAFVEFSHLQDATRWME---------------ANQHSLNILGQ 73 (91)
T ss_dssp CCHHHHHHHHHHHTCCCSBCCSSSCSSSC----CCSSEEEEECSSHHHHHHHHH---------------TTTTEEEETTE
T ss_pred CCHHHHHHHHHHhCCEeEEEEEEecCCCC----CcCceEEEEecCHHHHHHHHH---------------hcCCCeEECCE
Confidence 34688999999999 89998887654421 123468999999999999999 774 5579999
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.|...+-.+
T Consensus 74 ~i~V~~a~~ 82 (91)
T 2lxi_A 74 KVSMHYSDP 82 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEEEcCC
Confidence 999987644
No 110
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.45 E-value=1.4e-06 Score=54.11 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=52.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...+.+. ...+-.||+|.+.++|.+|+. |||..+.|+.|
T Consensus 18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~----------------~~g~~~~g~~l 77 (89)
T 3ucg_A 18 ATAEELEAHFHGCGSVNRVTILCDKFSG----HPKGFAYIEFSDKESVRTSLA----------------LDESLFRGRQI 77 (89)
T ss_dssp CCHHHHHHHHGGGCCEEEEEEEESCSSS----SCCEEEEEEESSTHHHHHHGG----------------GTTCEETTEEC
T ss_pred CCHHHHHHHHHhCCCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHh----------------cCCCEECCcEE
Confidence 3467899999999999999998764321 234678999999999999884 56777889999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 78 ~V~~a~~ 84 (89)
T 3ucg_A 78 KVIPKRT 84 (89)
T ss_dssp EEEETTT
T ss_pred EEEEccC
Confidence 9886543
No 111
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=1.3e-07 Score=58.67 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=49.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.+. ...+-.||+|.+.++|.+|+. .|||..+.||.+
T Consensus 17 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~~ 77 (85)
T 1x4e_A 17 TTDQDLVKLCQPYGKIVSTKAILDKTTN----KCKGYGFVDFDSPSAAQKAVT---------------ALKASGVQAQMA 77 (85)
T ss_dssp CCHHHHHTTSTTTSCEEEEEEECCSSSC----SCCSEEEEEESCHHHHHHHHH---------------HHHHHTCCEESC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC----CcCcEEEEEECCHHHHHHHHH---------------HhcCCeEeeEEE
Confidence 3467888889999999999998765421 123468999999999999999 788888888877
Q ss_pred EE
Q psy2134 88 RA 89 (104)
Q Consensus 88 ~a 89 (104)
+.
T Consensus 78 ~~ 79 (85)
T 1x4e_A 78 KQ 79 (85)
T ss_dssp CS
T ss_pred ee
Confidence 54
No 112
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.45 E-value=1.3e-06 Score=60.10 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=54.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...... ....+..||+|.+.++|.+|+. . ||+.+.|+.|
T Consensus 116 ~t~~~l~~~F~~~G~i~~v~i~~~~~~----g~~~g~afV~F~~~~~A~~A~~---------------~-~~~~~~G~~i 175 (196)
T 1l3k_A 116 TEEHHLRDYFEQYGKIEVIEIMTDRGS----GKKRGFAFVTFDDHDSVDKIVI---------------Q-KYHTVNGHNC 175 (196)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHH---------------C-SCCEETTEEC
T ss_pred CCHHHHHHHHhcCCCeEEEEEeecCCC----CCccceEEEEECCHHHHHHHHH---------------h-CCcEECCEEE
Confidence 346789999999999999999876432 1235678999999999999999 7 7999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
...+...
T Consensus 176 ~v~~a~~ 182 (196)
T 1l3k_A 176 EVRKALS 182 (196)
T ss_dssp EEEECC-
T ss_pred EEEecCC
Confidence 9987644
No 113
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=2.5e-07 Score=59.22 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=51.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|.. +-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 23 ~t~~~l~~~F~~~G~v~~v~i~~------------g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 75 (96)
T 2kvi_A 23 VSKEDLFRIFSPYGHIMQINIKN------------AFGFIQFDNPQSVRDAIE---------------CESQEMNFGKKL 75 (96)
T ss_dssp CCHHHHHHHHTTTCCCCEEEEET------------TEEEEEESCHHHHHHHHH---------------HHTCSSCBTTTB
T ss_pred CCHHHHHHHHHhcCCEEEEEEeC------------CEEEEEECCHHHHHHHHH---------------HcCCCeeCCcEE
Confidence 44678899999999999998852 358999999999999999 899999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+++-..
T Consensus 76 ~V~~a~~ 82 (96)
T 2kvi_A 76 ILEVSSS 82 (96)
T ss_dssp CEEEEEC
T ss_pred EEEEcCc
Confidence 9887643
No 114
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.44 E-value=9.4e-07 Score=59.99 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=51.5
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCce--eCCe
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRF--FAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~--F~GR 85 (104)
.-++|+++-++.||+|.+|.|...+ +-.||+|++.++|..|++ .|||.. +.||
T Consensus 33 ~te~~L~~lF~~fG~V~~v~i~~~k----------g~AFVef~~~~~A~~Av~---------------~ln~~~~~i~Gr 87 (100)
T 3r27_A 33 VVEADLVEALQEFGPISYVVVMPKK----------RQALVEFEDVLGACNAVN---------------YAADNQIYIAGH 87 (100)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHHHSCEEETTE
T ss_pred CCHHHHHHHHhccCCEEEEEEEcCC----------CEEEEEECCHHHHHHHHH---------------HhcCCCceeCCc
Confidence 3467899999999999999987532 358999999999999999 888874 7899
Q ss_pred EEEEEEec
Q psy2134 86 MVRAELYD 93 (104)
Q Consensus 86 ~V~a~~yd 93 (104)
.|...|-.
T Consensus 88 ~i~V~~S~ 95 (100)
T 3r27_A 88 PAFVNYST 95 (100)
T ss_dssp EEEEEECS
T ss_pred EEEEEecc
Confidence 99998754
No 115
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=5.2e-07 Score=60.70 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=50.2
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc--eeCCeE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR--FFAGRM 86 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR--~F~GR~ 86 (104)
=++|+++-++.||.|.+|.|...+ +-.||+|++.++|..|+. .|||. .+.||.
T Consensus 29 te~dL~~lF~~fG~V~~v~i~~~k----------g~aFVef~~~~~A~~Ai~---------------~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 29 LRYQLLQLVEPFGVISNHLILNKI----------NEAFIEMATTEDAQAAVD---------------YYTTTPALVFGKP 83 (102)
T ss_dssp HHHHHHTTTGGGSCEEEEEECSSS----------SCEEEEESSHHHHHHHHH---------------HHHHSCCEETTEE
T ss_pred CHHHHHHHHHhcCCEEEEEEEcCC----------CEEEEEECCHHHHHHHHH---------------HHcCCCceECCcE
Confidence 357888889999999999987543 237999999999999999 88764 599999
Q ss_pred EEEEEec
Q psy2134 87 VRAELYD 93 (104)
Q Consensus 87 V~a~~yd 93 (104)
|...+-.
T Consensus 84 l~V~~a~ 90 (102)
T 1x4d_A 84 VRVHLSQ 90 (102)
T ss_dssp CEEEEEC
T ss_pred EEEEECC
Confidence 9998764
No 116
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.43 E-value=1.6e-07 Score=58.78 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=53.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.+. ...+-.||+|.+.+ |.+|+. .|||..+.|+.|
T Consensus 13 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~-a~~a~~---------------~l~g~~~~g~~l 72 (90)
T 2ki2_A 13 ATSEQVKELFSQFGKVFNVKLIYDRETK----KPKGFGFVEMQEES-VSEAIA---------------KLDNTDFMGRTI 72 (90)
T ss_dssp SSHHHHTTTHHHHTCCSEEEECCCSSSC----CCCEEEEEEECTTH-HHHHHH---------------TSCSSCCSSSSC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEEcCCCC----CcceEEEEEECCHH-HHHHHH---------------HhCCCEECCeEE
Confidence 3457788888999999999998765421 23467899999999 999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 73 ~V~~a~~ 79 (90)
T 2ki2_A 73 RVTEANP 79 (90)
T ss_dssp SEEEC--
T ss_pred EEEEcCC
Confidence 9887543
No 117
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.43 E-value=3.7e-07 Score=59.51 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=52.1
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|.. +-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 40 ~t~~~l~~~F~~~G~v~~v~i~~------------g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 92 (110)
T 1wf1_A 40 VKKSDVETIFSKYGRVAGCSVHK------------GYAFVQYSNERHARAAVL---------------GENGRVLAGQTL 92 (110)
T ss_dssp CCHHHHHHHHGGGSCCSEEEEET------------TEEEEECSSSHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhCCCeEEEEEeC------------CEEEEEECCHHHHHHHHH---------------HcCCCEECCeEE
Confidence 34678898999999999998821 358999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 93 ~V~~a~~ 99 (110)
T 1wf1_A 93 DINMAGE 99 (110)
T ss_dssp CEEESCC
T ss_pred EEEECCC
Confidence 9998753
No 118
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=7.5e-07 Score=61.72 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=51.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee-----
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF----- 82 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F----- 82 (104)
.-++++++.+++||.|.+|.|+.. .+-.||+|++.++|.+|+. .|||+.+
T Consensus 39 ~te~~L~~~F~~fG~v~~v~i~~~----------rgfaFV~f~~~~~A~~Ai~---------------~lnG~~~~~~lg 93 (114)
T 2cq2_A 39 VSRNQLLPVLEKCGLVDALLMPPN----------KPYSFARYRTTEESKRAYV---------------TLNGKEVVDDLG 93 (114)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCTT----------CSCEEEEESSHHHHHHHHH---------------HTTTCEEECTTS
T ss_pred CCHHHHHHHHHhcCCeEEEEEeCC----------CCEEEEEECCHHHHHHHHH---------------HhCCCEEccccC
Confidence 456889999999999999888642 2357999999999999999 8888887
Q ss_pred CCeEEEEEEecc
Q psy2134 83 AGRMVRAELYDQ 94 (104)
Q Consensus 83 ~GR~V~a~~yd~ 94 (104)
.|+.+...|-..
T Consensus 94 ~g~~l~v~~a~~ 105 (114)
T 2cq2_A 94 QKITLYLNFVEK 105 (114)
T ss_dssp CEEECEEEEESC
T ss_pred CCcEEEEEeccc
Confidence 688888887643
No 119
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.42 E-value=1.6e-06 Score=61.37 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=56.8
Q ss_pred eehhHHHHHhhhCC--ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 8 VIYNEKQSDDEAYG--QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG--~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
.=++|+++-+++|| .|.+|.|..++... ...|-.||+|.+.++|.+|+. .|||..+.||
T Consensus 67 ~te~~L~~~F~~~G~i~v~~v~i~~d~~tg----~skGfaFV~f~~~~~A~~Ai~---------------~lng~~~~Gr 127 (156)
T 3n9u_C 67 TTDQQLIQVIRSIGVYDVVELKFAENRANG----QSKGYAEVVVASENSVHKLLE---------------LLPGKVLNGE 127 (156)
T ss_dssp CCHHHHHHHHHHTTCCCEEEEEEEECTTTC----CEEEEEEEEESCHHHHHHHHH---------------HSTTCEETTE
T ss_pred CCHHHHHHHHHHHCCccEEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HcCCCEECCe
Confidence 34678999999999 99999998765421 235678999999999999999 9999999999
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.|.+.+-..
T Consensus 128 ~l~V~~a~~ 136 (156)
T 3n9u_C 128 KVDVRPATR 136 (156)
T ss_dssp ECEEEECCH
T ss_pred EeEEEEcCC
Confidence 999987643
No 120
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.42 E-value=9.5e-07 Score=59.22 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=55.4
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++||.|.+|.|...+.+. ...+-.||+|.+.++|.+|+. .|||..+.|+.+.
T Consensus 16 ~~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~a~~---------------~l~~~~~~g~~l~ 76 (168)
T 1b7f_A 16 TDRELYALFRAIGPINTCRIMRDYKTG----YSYGYAFVDFTSEMDSQRAIK---------------VLNGITVRNKRLK 76 (168)
T ss_dssp CHHHHHHHHHTTSCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHHHhcCCeeEEEEEEeCCCC----ccceEEEEEECCHHHHHHHHH---------------hcCCCEeCCcEEE
Confidence 367889999999999999987754321 123468999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
+.+-..
T Consensus 77 v~~~~~ 82 (168)
T 1b7f_A 77 VSYARP 82 (168)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 987654
No 121
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.42 E-value=7.5e-07 Score=64.97 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=52.3
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=.+++++-+++||.|.+|.|...+. +-.||+|.+.++|.+|+. .|||..+.||.|.
T Consensus 18 ~~~~L~~~F~~~G~v~~v~i~~~~~---------g~afV~f~~~~~A~~Ai~---------------~lng~~~~g~~l~ 73 (205)
T 3tyt_A 18 NCDRVFNVFCLYGNVEKVKFMKSKP---------GAAMVEMADGYAVDRAIT---------------HLNNNFMFGQKMN 73 (205)
T ss_dssp CHHHHHHHHTTTSCEEEEEECTTST---------TCEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHHHhcCCeEEEEEecCCC---------CEEEEEECCHHHHHHHHH---------------HhCCCEECCceEE
Confidence 3567888899999999999976432 347999999999999999 9999999999999
Q ss_pred EEEec
Q psy2134 89 AELYD 93 (104)
Q Consensus 89 a~~yd 93 (104)
..+-.
T Consensus 74 v~~s~ 78 (205)
T 3tyt_A 74 VCVSK 78 (205)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 98753
No 122
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=5.3e-07 Score=57.76 Aligned_cols=67 Identities=15% Similarity=0.002 Sum_probs=55.1
Q ss_pred eehhHHHHHhhh-CCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCce-eCCe
Q psy2134 8 VIYNEKQSDDEA-YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRF-FAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~k-yG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~-F~GR 85 (104)
.-++|+++-+++ ||.|.+|.|...... ...+-.||+|.+.++|.+|+. .|||.. +.|+
T Consensus 21 ~t~~~l~~~F~~~~G~v~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~~g~ 80 (104)
T 2dhg_A 21 VDDGMLYEFFVKVYPSCRGGKVVLDQTG-----VSKGYGFVKFTDELEQKRALT---------------ECQGAVGLGSK 80 (104)
T ss_dssp CCHHHHHHHHHHHCTTEEEEEEEECTTC-----CEEEEEEEEESCHHHHHHHHH---------------HTTTCCSSSSS
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEECCCC-----CccceEEEEECCHHHHHHHHH---------------HccCCcccCCE
Confidence 346788888999 999999999876521 235678999999999999999 888888 8999
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.|.+.+-..
T Consensus 81 ~l~v~~a~~ 89 (104)
T 2dhg_A 81 PVRLSVAIP 89 (104)
T ss_dssp CCCCCBCCC
T ss_pred eEEEEEccC
Confidence 998877644
No 123
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=7.8e-07 Score=57.22 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=55.5
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. . ||..+.|+.|
T Consensus 28 ~t~~~l~~~F~~~G~v~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~a~~---------------~-~~~~~~g~~l 87 (105)
T 2dh8_A 28 TTQETLRSYFSQYGEVVDCVIMKDKTTN----QSRGFGFVKFKDPNCVGTVLA---------------S-RPHTLDGRNI 87 (105)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECSSSC----CEEEEEEEEESSTTHHHHHHH---------------H-CSEEETTEEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCCCCC----CcceEEEEEECCHHHHHHHHH---------------h-CCCeECCEEE
Confidence 4467899999999999999998764321 234678999999999999999 8 9999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+...
T Consensus 88 ~V~~a~~ 94 (105)
T 2dh8_A 88 DPKPCTP 94 (105)
T ss_dssp BCCCSCC
T ss_pred EEEEccC
Confidence 9887643
No 124
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.41 E-value=4.3e-07 Score=62.14 Aligned_cols=62 Identities=27% Similarity=0.297 Sum_probs=53.0
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-.+|+++-+++||.|.+|.|...+ .+-.||+|.+.++|.+|+. .|||..+.|+.|.
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~~---------~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARNP---------PGFAFVEFEDPRDAADAVR---------------ELDGRTLCGCRVR 141 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSSS---------CSEEEEEESSHHHHHHHHH---------------HHSSSCSSSSCCE
T ss_pred CHHHHHHHHHhhCCEEEEEEeeCC---------CcEEEEEECCHHHHHHHHH---------------HcCCCEECCeEEE
Confidence 357888889999999999998652 2368999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
+.+-..
T Consensus 142 v~~a~~ 147 (150)
T 2i2y_A 142 VELSNG 147 (150)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 987543
No 125
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=1.2e-06 Score=57.04 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=53.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee-----
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF----- 82 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F----- 82 (104)
.=.+|+++-+++||.|.+|.|...+.. ...+-.||+|.+.++|.+|+. .|||..+
T Consensus 37 ~t~~~l~~~F~~~G~i~~~~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~~~~~ 96 (114)
T 1x5o_A 37 MDEQELENMLKPFGQVISTRILRDSSG-----TSRGVGFARMESTEKCEAVIG---------------HFNGKFIKTPPG 96 (114)
T ss_dssp CCHHHHHHTTTTTSCEEEEEEEECSSS-----CEEEEEEEEESCHHHHHHHHH---------------HHBTCCCCCCTT
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCC-----CcceEEEEEECCHHHHHHHHH---------------HhCCCEEcCCcc
Confidence 346788888999999999999876421 234678999999999999999 6666666
Q ss_pred ---CCeEEEEEEecc
Q psy2134 83 ---AGRMVRAELYDQ 94 (104)
Q Consensus 83 ---~GR~V~a~~yd~ 94 (104)
.|+.+.+.|-++
T Consensus 97 ~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGP 111 (114)
T ss_dssp SCCCSSCBEEEECCC
T ss_pred ccCCCCceeEEccCC
Confidence 677888887654
No 126
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.40 E-value=1.1e-06 Score=59.72 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=49.7
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-.+|+++.+++||.|..+ .... ...+..||+|.+.++|.+|+. .|||+.+.||.|.
T Consensus 112 t~~~l~~~F~~~g~v~~~--~~~~-------~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~i~ 167 (175)
T 1fje_B 112 TEDELKEVFEDALEIRLV--SQDG-------KSKGIAYIEFKSEADAEKNLE---------------EKQGAEIDGRSVS 167 (175)
T ss_dssp CHHHHHHHCTTCSEEEEE--CSSS-------SCCSEEEEECSSHHHHHHHHH---------------HHTEEEETTEEEE
T ss_pred CHHHHHHHHHhcCeEEEe--cCCC-------CCceEEEEEECCHHHHHHHHH---------------HhCCCEECCeEEE
Confidence 467899999999999764 1111 123568999999999999999 9999999999999
Q ss_pred EEEec
Q psy2134 89 AELYD 93 (104)
Q Consensus 89 a~~yd 93 (104)
+.|-.
T Consensus 168 v~~a~ 172 (175)
T 1fje_B 168 LYYTG 172 (175)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 98764
No 127
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.40 E-value=5e-07 Score=59.50 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=51.7
Q ss_pred eehhHHHHHhhhCCc--eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc----e
Q psy2134 8 VIYNEKQSDDEAYGQ--VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR----F 81 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~--V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR----~ 81 (104)
.=++++++-+++||. |.+|.|..++.+. ...+-.||+|.+.++|.+|++ .|||. .
T Consensus 21 ~tee~L~~~F~~~G~i~v~~v~i~~d~~tg----~srG~aFV~f~~~~~A~~Ai~---------------~lng~~~~~~ 81 (95)
T 2lkz_A 21 TVVDSIMTALSPYASLAVNNIRLIKDKQTQ----QNRGFAFVQLSSAMDASQLLQ---------------ILQSLHPPLK 81 (95)
T ss_dssp CCHHHHHHHSTTTCCCCGGGEECCCCSSSS----SCSSEEEEECSSSHHHHHHHH---------------HHHSSSSCEE
T ss_pred CCHHHHHHHHHhhCCccEEEEEEEecCCCC----CCceEeEEEECCHHHHHHHHH---------------HhcCCCCCce
Confidence 346889999999995 6688887765421 123468999999999999999 77776 5
Q ss_pred eCCeEEEEEEe
Q psy2134 82 FAGRMVRAELY 92 (104)
Q Consensus 82 F~GR~V~a~~y 92 (104)
++||.|.+.|-
T Consensus 82 i~Gr~i~V~~A 92 (95)
T 2lkz_A 82 IDGKTIGVDFA 92 (95)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCEEEEEEEc
Confidence 89999998864
No 128
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.39 E-value=6.4e-07 Score=60.75 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=52.8
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-++|+++-+++||.|.+|.|...+ +..||+|.+.++|.+|+. .|||..+.|+.|.
T Consensus 50 te~~L~~~F~~~G~I~~v~i~~~k----------g~aFV~f~~~~~A~~Ai~---------------~lng~~~~g~~l~ 104 (121)
T 2bz2_A 50 TPTLLRGAFSPFGNIIDLSMDPPR----------NCAFVTYEKMESADQAVA---------------ELNGTQVESVQLK 104 (121)
T ss_dssp CHHHHHHHHSTTCCCSCEEEETTT----------TEEEEECSSHHHHHHHHH---------------HHTTCBCSSCBCE
T ss_pred CHHHHHHHHHccCCEEEEEEeCCC----------CEEEEEECCHHHHHHHHH---------------HhCCCEECCeEEE
Confidence 367889899999999999886321 358999999999999999 9999999999999
Q ss_pred EEEeccc
Q psy2134 89 AELYDQS 95 (104)
Q Consensus 89 a~~yd~~ 95 (104)
+.+-...
T Consensus 105 V~~a~~~ 111 (121)
T 2bz2_A 105 VNIARKQ 111 (121)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 9876543
No 129
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.39 E-value=6e-07 Score=65.08 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=52.5
Q ss_pred ehhHHHHHhhhCC-ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC-CeE
Q psy2134 9 IYNEKQSDDEAYG-QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA-GRM 86 (104)
Q Consensus 9 i~~ev~~Ec~kyG-~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~-GR~ 86 (104)
-.+++++.+++|| .|..|.|..... +..||+|.+.++|.+|+. .|||+.+. |+.
T Consensus 164 t~~~l~~~f~~~G~~i~~v~i~~~~~---------g~afV~f~~~~~A~~Ai~---------------~l~g~~~~~g~~ 219 (229)
T 2adc_A 164 SEEDLKVLFSSNGGVVKGFKFFQKDR---------KMALIQMGSVEEAVQALI---------------DLHNHDLGENHH 219 (229)
T ss_dssp CHHHHHHHHHTTSCCEEEEEECSSST---------TCEEEEESSHHHHHHHHH---------------HHTTCBSSSSCB
T ss_pred CHHHHHHHHHHcCCCeeEEEEEECCC---------cEEEEEECCHHHHHHHHH---------------HHCCCccCCCCe
Confidence 4688999999999 999999854221 358999999999999999 99999999 999
Q ss_pred EEEEEecc
Q psy2134 87 VRAELYDQ 94 (104)
Q Consensus 87 V~a~~yd~ 94 (104)
|.+.|-..
T Consensus 220 l~v~~a~~ 227 (229)
T 2adc_A 220 LRVSFSKS 227 (229)
T ss_dssp CEEEECSS
T ss_pred EEEEEecC
Confidence 99987543
No 130
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=1.5e-06 Score=56.90 Aligned_cols=67 Identities=22% Similarity=0.239 Sum_probs=54.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++++++-+++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. . ||..+.|+.|
T Consensus 39 ~te~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~Ai~---------------~-~~~~~~g~~l 98 (116)
T 1x4b_A 39 TTEESLRNYYEQWGKLTDCVVMRDPASK----RSRGFGFVTFSSMAEVDAAMA---------------A-RPHSIDGRVV 98 (116)
T ss_dssp CCHHHHHHHHTSSCCCSEEEEECCTTTS----SCCSEEEEECSSHHHHHHHHT---------------S-CSEEETTEEE
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCCC----CcCceEEEEeCCHHHHHHHHH---------------h-CCcEECCEEE
Confidence 3467889899999999999998764421 123568999999999999999 7 9999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 99 ~V~~a~~ 105 (116)
T 1x4b_A 99 EPKRAVA 105 (116)
T ss_dssp EEECCSS
T ss_pred EEEECCC
Confidence 9987643
No 131
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.38 E-value=4.7e-07 Score=54.93 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=49.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=.+|+++-+++||.|.+|.|+..+.+. ...+-.||+|.+.++|.+|+. |||..+.|+.|
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~----------------~~~~~~~g~~l 70 (75)
T 2mss_A 11 TTVEDVKHYFEQFGKVDDAMLMFDKTTN----RHRGFGFVTFESEDIVEKVCE----------------IHFHEINNKMV 70 (75)
T ss_dssp CCHHHHHHHHHTTSCCSEECCCBCSSST----TSCBEEEEECSCHHHHHHHHS----------------SSCCCSSSCCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCC----CcCcEEEEEECCHHHHHHHHH----------------CCCCEECCEEE
Confidence 3467889999999999999887765321 234578999999999998876 57777788887
Q ss_pred EEE
Q psy2134 88 RAE 90 (104)
Q Consensus 88 ~a~ 90 (104)
.+.
T Consensus 71 ~v~ 73 (75)
T 2mss_A 71 ECK 73 (75)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 132
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.37 E-value=9.3e-07 Score=60.03 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=52.2
Q ss_pred eehhHHHHHhhhCC-ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDDEAYG-QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG-~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.-.+|+++-+++|| .|..+.|+... + .+..||+|++.++|.+|+. .|||..+.||.
T Consensus 40 ~te~dL~~~F~~~G~~v~~v~i~~~~-~-------rGfaFV~F~~~e~A~~Ai~---------------~lng~~l~Gr~ 96 (111)
T 2jvr_A 40 CSWQDLKDLARENSLETTFSSVNTRD-F-------DGTGALEFPSEEILVEALE---------------RLNNIEFRGSV 96 (111)
T ss_dssp CCHHHHHHHHHHHTCCCSEEECSSCS-S-------SCCEEEEESSHHHHHHHHH---------------HTTTEEETTEE
T ss_pred CCHHHHHHHHHHhCCeeEEEEEEcCC-C-------CCEEEEEECCHHHHHHHHH---------------HcCCCEECCeE
Confidence 34678888899999 89998886321 1 2357999999999999999 99999999999
Q ss_pred EEEEEec
Q psy2134 87 VRAELYD 93 (104)
Q Consensus 87 V~a~~yd 93 (104)
|.+.+-.
T Consensus 97 i~V~~a~ 103 (111)
T 2jvr_A 97 ITVERDD 103 (111)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9998653
No 133
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.36 E-value=4.9e-07 Score=54.76 Aligned_cols=64 Identities=8% Similarity=0.112 Sum_probs=50.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|+..+.+. ...+-.||+|.+.++|.+|+. .|| ..+.|+.+
T Consensus 12 ~t~~~l~~~F~~~G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~---------------~~~-~~~~g~~l 71 (77)
T 1uaw_A 12 TTQEGLREYFGQFGEVKECLVMRDPLTK----RSRGFGFVTFMDQAGVDKVLA---------------QSR-HELDSKTI 71 (77)
T ss_dssp CCSHHHHHHHTTTSCCCCEEEECCCCSS----SCSSEEEECCCCTTHHHHHHH---------------TTT-CCCSSCCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCCCC----CcCceEEEEEcCHHHHHHHHH---------------hCC-CccCCEEE
Confidence 3467889999999999999998765421 123568999999999999999 777 77888887
Q ss_pred EEEE
Q psy2134 88 RAEL 91 (104)
Q Consensus 88 ~a~~ 91 (104)
...+
T Consensus 72 ~v~~ 75 (77)
T 1uaw_A 72 DPKV 75 (77)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 134
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=1.7e-06 Score=55.07 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=52.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. |||..+.|+.|
T Consensus 22 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~----------------~~~~~~~g~~l 81 (99)
T 2dgs_A 22 CGETELREYFKKFGVVTEVVMIYDAEKQ----RPRGFGFITFEDEQSVDQAVN----------------MHFHDIMGKKV 81 (99)
T ss_dssp CCHHHHHHHHSSSSCEEEEEECCCTTTC----SCCSEEEEEESSHHHHHHHHH----------------HCCCBSSSCBC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCC----CCCceEEEEECCHHHHHHHHH----------------hCCCEECCeEE
Confidence 4467889899999999999998764321 123568999999999999987 46777788899
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 82 ~V~~a~~ 88 (99)
T 2dgs_A 82 EVKRAEP 88 (99)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9887654
No 135
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.35 E-value=2.9e-06 Score=56.00 Aligned_cols=66 Identities=14% Similarity=0.249 Sum_probs=52.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+... ...+..||+|.+.++|.+|+. |||..|.|+.|
T Consensus 48 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~----------------l~g~~~~g~~l 107 (124)
T 2jwn_A 48 STAQDLEAHFSSCGSINRITILCDKFSG----HPKGYAYIEFAERNSVDAAVA----------------MDETVFRGRTI 107 (124)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEEECTTS----SCEEEEEEEESSHHHHHHHHT----------------TTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCC----CcccEEEEEECCHHHHHHHHh----------------cCCCeECCeEE
Confidence 3467889899999999999998754321 235678999999999999984 56777889999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 108 ~V~~a~ 113 (124)
T 2jwn_A 108 KVLPKR 113 (124)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 988754
No 136
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.35 E-value=4.2e-07 Score=62.40 Aligned_cols=68 Identities=28% Similarity=0.362 Sum_probs=55.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...+... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 59 ~te~~L~~~F~~~G~i~~v~i~~~~~~g----~~~G~afV~F~~~~~A~~Ai~---------------~l~g~~i~g~~l 119 (135)
T 2lea_A 59 TSPDTLRRVFEKYGRVGDVYIPRDRYTK----ESRGFAFVRFHDKRDAEDAMD---------------AMDGAVLDGREL 119 (135)
T ss_dssp CHHHHHHHHHGGGSCCSEEECCCCSSSS----SCCSCCEEECSCHHHHHHHHT---------------TTTTCCSSSSCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence 3467889999999999999987654321 123458999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 120 ~V~~a~~ 126 (135)
T 2lea_A 120 RVQMARY 126 (135)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9987654
No 137
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.34 E-value=3.1e-06 Score=60.70 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=55.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++++++-+++||.|++|.|..++.+. ...+-.||+|.+.++|.+|+. .|||..+.|+.+
T Consensus 27 ~te~~L~~~F~~~G~I~~v~i~~d~~tg----~~~G~afV~F~~~~~A~~Ai~---------------~~~~~~~~g~~i 87 (213)
T 4f02_A 27 VTEAMLYEKFSPAGPILSIRVCRDMITR----RSLGYAYVNFQQPADAERALD---------------TMNFDVIKGKPV 87 (213)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhhCCEEEEEEecccCCC----CccccccceeCCHHHHHHHHH---------------HhhhhhcCCccc
Confidence 3467889999999999999998765421 235678999999999999999 899999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
+...-.
T Consensus 88 ~~~~~~ 93 (213)
T 4f02_A 88 RIMWSQ 93 (213)
T ss_dssp EEEECC
T ss_pred cccccc
Confidence 877543
No 138
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.33 E-value=1.4e-06 Score=58.52 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=52.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...+.. ....+..||+|.+.++|.+|+. |||..+.||.|
T Consensus 99 ~t~~~l~~~F~~~G~i~~~~i~~~~~~----g~~~g~afV~f~~~~~a~~A~~----------------~~~~~~~g~~i 158 (167)
T 2cjk_A 99 VRPKEFEEFFSQWGTIIDAQLMLDKDT----GQSRGFGFVTYDSADAVDRVCQ----------------NKFIDFKDRKI 158 (167)
T ss_dssp CCHHHHHHHHHTTSCCSEEECCCSSSS----STTSEEEEEEESSHHHHHHHHH----------------CSEECSSSSCE
T ss_pred CCHHHHHHHHHhCccEEEEEEEEcCCC----CccceEEEEEECCHHHHHHHHh----------------CCCEEeCCeEE
Confidence 346789999999999999998776432 1234578999999999999987 47888889999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-.+
T Consensus 159 ~V~~a~p 165 (167)
T 2cjk_A 159 EIKRAEP 165 (167)
T ss_dssp EEEECCC
T ss_pred EEeecCC
Confidence 9887543
No 139
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=1.5e-06 Score=60.35 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=54.5
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc--CceeCCe
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN--GRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln--GR~F~GR 85 (104)
.-++|+++-+++||.|.+|.|...+ +-.||+|++.++|.+|+. .|| |..+.||
T Consensus 43 vte~dL~~lF~~fG~V~~v~i~~~k----------G~AFVeF~~~e~A~~Ai~---------------~l~~~~~~l~Gr 97 (119)
T 2ad9_A 43 VTEGEVISLGLPFGKVTNLLMLKGK----------NQAFIEMNTEEAANTMVN---------------YYTSVTPVLRGQ 97 (119)
T ss_dssp CCHHHHHHHHTTTSCCCEEEEEGGG----------TEEEEECSCHHHHHHHHH---------------HHHHHCCCBTTB
T ss_pred CCHHHHHHHHHhcCCEEEEEEeCCC----------CEEEEEECCHHHHHHHHH---------------HhccCCceECCe
Confidence 4568899999999999999998642 468999999999999999 776 4689999
Q ss_pred EEEEEEecccccc
Q psy2134 86 MVRAELYDQSLFD 98 (104)
Q Consensus 86 ~V~a~~yd~~~f~ 98 (104)
.|.+.+-......
T Consensus 98 ~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 98 PIYIQFSNHKELK 110 (119)
T ss_dssp CCEEEECSSSSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999987654443
No 140
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.32 E-value=1.1e-06 Score=58.44 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=45.6
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
=++|+++-+++||.|..|.|..+ +..||+|.+.++|.+|+. .|||..+.|+.
T Consensus 29 t~~~l~~~F~~~G~v~~~~i~~~-----------g~afV~f~~~~~a~~Ai~---------------~l~g~~~~gr~ 80 (115)
T 3beg_B 29 SWQDLKDHMREAGDVCYADVYRD-----------GTGVVEFVRKEDMTYAVR---------------KLDNTKFRSHE 80 (115)
T ss_dssp CTTHHHHHHGGGSCEEEEEECTT-----------SEEEEEESSHHHHHHHHH---------------HHTTCBCCCTT
T ss_pred CHHHHHHHHHhcCCeEEEEEecC-----------CEEEEEECCHHHHHHHHH---------------HhCCCEECCcE
Confidence 36788989999999999988753 468999999999999999 88888888877
No 141
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=3.3e-06 Score=55.15 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=51.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...+... ...+..||+|.+.++|.+|+. |||..|.|+.|
T Consensus 37 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~----------------l~g~~~~g~~l 96 (114)
T 2cq4_A 37 IRPRDLEDFFSAVGKVRDVRIISDRNSR----RSKGIAYVEFCEIQSVPLAIG----------------LTGQRLLGVPI 96 (114)
T ss_dssp CCHHHHHHHHTTTSCEEEEEECCSCCSS----SCCCCEEEEESCGGGHHHHHH----------------HTTEEETTEEE
T ss_pred CCHHHHHHHHHhCCCEeEEEEEecCCCC----ccCcEEEEEeCcHHHHHHHHH----------------cCCCEeCCeEE
Confidence 3467889899999999999998755421 123568999999999999984 45777788999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+..
T Consensus 97 ~V~~a~ 102 (114)
T 2cq4_A 97 IVQASQ 102 (114)
T ss_dssp EEEEHH
T ss_pred EEEecC
Confidence 888753
No 142
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=1.3e-06 Score=59.71 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=51.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc--CceeCCe
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN--GRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln--GR~F~GR 85 (104)
.=++|+++-+++||.|.+|.|...+ +-.||+|++.++|..|+. .|+ |..+.||
T Consensus 28 vte~dL~~lF~~fG~V~~v~i~~~k----------GfaFVeF~~~~~A~~Ai~---------------~l~~~~~~l~Gr 82 (105)
T 1sjq_A 28 VTEGEVISLGLPFGKVTNLLMLKGK----------NQAFIEMNTEEAANTMVN---------------YYTSVTPVLRGQ 82 (105)
T ss_dssp SCHHHHHHHHHHHCCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHTTSCCEETTE
T ss_pred CCHHHHHHHHHhcCCEEEEEEEcCC----------CEEEEEECCHHHHHHHHH---------------HhccCCceECCE
Confidence 3467889999999999999998642 358999999999999999 775 4789999
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.|...+-..
T Consensus 83 ~l~V~~A~~ 91 (105)
T 1sjq_A 83 PIYIQFSNH 91 (105)
T ss_dssp ECCBCCCSS
T ss_pred EEEEEEcCC
Confidence 998876544
No 143
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.31 E-value=2.3e-06 Score=53.87 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=53.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++| .|.+|.|.. ..+-.||+|.+.++|.+|+. .|||..+.||.+
T Consensus 17 ~t~~~l~~~F~~~-~v~~~~i~~----------~~g~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~l 70 (88)
T 1wg1_A 17 SNCQEVHDLLKDY-DLKYCYVDR----------NKRTAFVTLLNGEQAQNAIQ---------------MFHQYSFRGKDL 70 (88)
T ss_dssp CCHHHHHHHTCSS-CCCCEEEEG----------GGTEEEECCSCHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred CCHHHHHHHHhhC-CeEEEEEeC----------CCcEEEEEECCHHHHHHHHH---------------HhCCCeECCcEE
Confidence 3467888889999 999998851 12368999999999999999 999999999999
Q ss_pred EEEEeccccc
Q psy2134 88 RAELYDQSLF 97 (104)
Q Consensus 88 ~a~~yd~~~f 97 (104)
...+-+.+.+
T Consensus 71 ~V~~a~~~~~ 80 (88)
T 1wg1_A 71 IVQLQPTDAL 80 (88)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCce
Confidence 9998776554
No 144
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=5.9e-07 Score=61.78 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=50.0
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc--CceeCCeE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN--GRFFAGRM 86 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln--GR~F~GR~ 86 (104)
-++|+++-|++||.|.+|.|...+ +-.||+|.+.++|..|+. .|| +..+.||.
T Consensus 39 te~~L~~lF~~fG~V~~v~i~~~k----------g~aFVef~~~~~A~~Ai~---------------~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 39 SDSAVLKLAEPYGKIKNYILMRMK----------SQAFIEMETREDAMAMVD---------------HCLKKALWFQGRC 93 (112)
T ss_dssp CSHHHHTTTTTTSCCSEEEEETTT----------TEEEEECSSHHHHHHHHH---------------HHHHSCCCSSSSC
T ss_pred CHHHHHHHHHhcCCEEEEEEecCC----------CEEEEEECCHHHHHHHHH---------------HhccCCceECCEE
Confidence 457889999999999999997532 358999999999999999 765 45689999
Q ss_pred EEEEEec
Q psy2134 87 VRAELYD 93 (104)
Q Consensus 87 V~a~~yd 93 (104)
|.+.+-.
T Consensus 94 l~V~~a~ 100 (112)
T 1x4f_A 94 VKVDLSE 100 (112)
T ss_dssp CEEEEEC
T ss_pred EEEEECc
Confidence 9998753
No 145
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=6.4e-07 Score=57.21 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=50.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=.+|+++-+++||.|. +.|..... .+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 31 ~t~~~l~~~F~~~G~v~-~~~~~~~~--------~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 86 (97)
T 2e5j_A 31 ARVSDLKRALRELGSVP-LRLTWQGP--------RRRAFLHYPDSAAAQQAVS---------------CLQGLRLGTDTL 86 (97)
T ss_dssp CCHHHHHHHHHHTTCCC-SEEEEETT--------TTEEEEECSSHHHHHHHHH---------------HHTTCCSSSSCC
T ss_pred CcHHHHHHHHHhcCCEE-EEEEcCCC--------CcEEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence 34678898999999996 44543221 2358999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 87 ~V~~a~~ 93 (97)
T 2e5j_A 87 RVALARQ 93 (97)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9887543
No 146
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=2.2e-06 Score=55.28 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=54.0
Q ss_pred eehhHHHHHhhhCCc-eeEEEEe-cCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc--CceeC
Q psy2134 8 VIYNEKQSDDEAYGQ-VEKVVIY-NEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN--GRFFA 83 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~-V~kV~I~-~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln--GR~F~ 83 (104)
.-.+|+++-+++||. |.+|.|+ .+..+ ....+-.||+|.+.++|.+|+. .|| +..+.
T Consensus 20 ~t~~~l~~~f~~~G~~v~~v~i~~~~~~~----g~~~g~afV~f~~~~~A~~A~~---------------~l~~g~~~~~ 80 (109)
T 2dis_A 20 KKREEILEEIAKVTEGVLDVIVYASAADK----MKNRGFAFVEYESHRAAAMARR---------------KLMPGRIQLW 80 (109)
T ss_dssp SCHHHHHHHHHHHSTTEEEEECCSSSCTT----TTTCCEEEEEESSHHHHHHHHT---------------TTTTCCSCBT
T ss_pred CCHHHHHHHHHHhcCCceEEEEEccCCCC----CCcCcEEEEEecCHHHHHHHHH---------------HhhCCCceec
Confidence 346789999999998 9999887 33321 1123568999999999999999 885 47899
Q ss_pred CeEEEEEEeccc
Q psy2134 84 GRMVRAELYDQS 95 (104)
Q Consensus 84 GR~V~a~~yd~~ 95 (104)
|+.|.+.+-...
T Consensus 81 g~~l~V~~a~~~ 92 (109)
T 2dis_A 81 GHQIAVDWAEPE 92 (109)
T ss_dssp TBCCEEEESCSS
T ss_pred CCeEEEEEcCCC
Confidence 999999887543
No 147
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.28 E-value=2.5e-06 Score=69.38 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=56.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
+-.++|++.+++||.|+.|.|+..+.+. ...+-.||+|.+.++|..|+. .|||..|.|+.|
T Consensus 114 ~te~~L~~~F~~~G~I~~v~i~~d~~tg----~~kG~aFV~F~~~e~A~~Ai~---------------~lng~~i~gr~i 174 (437)
T 3pgw_S 114 TTESKLRREFEVYGPIKRIHMVYSKRSG----KPRGYAFIEYEHERDMHSAYK---------------HADGKKIDGRRV 174 (437)
T ss_pred CCHHHHHHHHHHcCCeeEEEeeccCCCC----CccceEEEeeccHHHHHHHHH---------------HcCCCEECCEEE
Confidence 3467899999999999999997654321 124568999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 175 ~V~~a~~ 181 (437)
T 3pgw_S 175 LVDVERG 181 (437)
T ss_pred EEEEeCC
Confidence 9998653
No 148
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.28 E-value=3.6e-06 Score=62.05 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=50.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+++++.+++||.|.+|.|+...... ....+..||+|.+.++|.+|+ +| ||+.+.||.|
T Consensus 223 ~t~~~l~~~F~~~G~v~~v~i~~~~~~t---g~~~g~afV~F~~~~~A~~A~-~l---------------~g~~~~g~~i 283 (292)
T 2ghp_A 223 LDENLLRESFEGFGSIEKINIPAGQKEH---SFNNCCAFMVFENKDSAERAL-QM---------------NRSLLGNREI 283 (292)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCSCCC------CCCEEEEEEESSHHHHHHHG-GG---------------TTEEETTEEE
T ss_pred CCHHHHHHHHhccCCeeEEEEEecCCcC---CCCceEEEEEeCCHHHHHHHH-Hh---------------cCCEECCcEE
Confidence 3467899999999999999887754300 123467899999999999998 44 5666689999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 284 ~V~~a~ 289 (292)
T 2ghp_A 284 SVSLAD 289 (292)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 988754
No 149
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.27 E-value=4.7e-06 Score=54.86 Aligned_cols=66 Identities=8% Similarity=0.068 Sum_probs=52.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|.....+. ...+-.||+|.+.++|.+|+. .+ |..+.||.|
T Consensus 37 ~te~~L~~~F~~~G~i~~v~i~~~~~tg----~~kg~afV~f~~~~~A~~Ai~---------------~~-~~~l~g~~l 96 (109)
T 2rs2_A 37 TTQEGLREYFGQFGEVKECLVMRDPLTK----RSRGFGFVTFMDQAGVDKVLA---------------QS-RHELDSKTI 96 (109)
T ss_dssp CCHHHHHHHHTTTSCEEEEEECCCTTTC----CCTTCEEEEESSHHHHHHHHH---------------SS-CEEETTEEE
T ss_pred CCHHHHHHHHHccCCeEEEEEEECCCCC----CcCcEEEEEECCHHHHHHHHH---------------HC-CCcCCCEEE
Confidence 3467889999999999999998764321 123458999999999999999 76 488999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 97 ~V~~a~ 102 (109)
T 2rs2_A 97 DPKVAF 102 (109)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 988754
No 150
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.25 E-value=2e-06 Score=61.79 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=56.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|...... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 100 ~te~~L~~~F~~~G~I~~v~i~~d~~g-----~~kG~afV~F~~~~~A~~Ai~---------------~lng~~l~Gr~l 159 (177)
T 2f3j_A 100 VSDADIQELFAEFGTLKKAAVDYDRSG-----RSLGTADVHFERRADALKAMK---------------QYKGVPLDGRPM 159 (177)
T ss_dssp CCHHHHHHHHHHTSCCSEEEECCCTTS-----SCSCCEEEEESCHHHHHHHHH---------------HSTTCBCSSSBC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCC-----CEeeEEEEEeCCHHHHHHHHH---------------HhCCCEECCEEE
Confidence 346889999999999999999875421 123458999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 160 ~V~~a~~~ 167 (177)
T 2f3j_A 160 DIQLVASQ 167 (177)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 99886543
No 151
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=2.9e-06 Score=56.13 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=50.1
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+++++-+++||+|.+|.|+..+.. ...|-.||+|++.++|.+|+. +||..|.||.|
T Consensus 23 ~te~~L~~~F~~~G~v~~v~i~~d~~g-----~~rG~aFV~F~~~e~a~~Ai~----------------~~~~~~~gr~l 81 (103)
T 1s79_A 23 ATLDDIKEWLEDKGQVLNIQMRRTLHK-----AFKGSIFVVFDSIESAKKFVE----------------TPGQKYKETDL 81 (103)
T ss_dssp CCHHHHHHHHHTSSCEEEEEEECCCTT-----SCCCEEEEEESSHHHHHHHHT----------------SSCCCCTTTTC
T ss_pred CCHHHHHHHHhhcCCEEEEEEEECCCC-----CCccEEEEEECCHHHHHHHHH----------------cCCCEECCEEE
Confidence 346788999999999999999876531 123568999999999999997 46777788888
Q ss_pred EEEE
Q psy2134 88 RAEL 91 (104)
Q Consensus 88 ~a~~ 91 (104)
...+
T Consensus 82 ~V~~ 85 (103)
T 1s79_A 82 LILF 85 (103)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 152
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=1.8e-06 Score=54.38 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=50.4
Q ss_pred eehhHHHHHhhhCCc-eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcC-ceeCCe
Q psy2134 8 VIYNEKQSDDEAYGQ-VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG-RFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~-V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnG-R~F~GR 85 (104)
.=++|+++-+++||. |..+.|.. .+-.||+|.+.++|.+|+. .||| ..+.|+
T Consensus 20 ~t~~~l~~~F~~~G~vv~~~~~~~-----------~g~afV~f~~~~~A~~A~~---------------~l~g~~~~~g~ 73 (93)
T 2cqh_A 20 VTADDLRQLFGDRKLPLAGQVLLK-----------SGYAFVDYPDQNWAIRAIE---------------TLSGKVELHGK 73 (93)
T ss_dssp CCHHHHHHHHHHTTCCCSSCEEEE-----------TTEEEECCSCHHHHHHHHH---------------HHTTTCEETTE
T ss_pred CCHHHHHHHHHHcCCceEEEEEcC-----------CCEEEEEECCHHHHHHHHH---------------HccCCeeECCE
Confidence 346788999999999 66555531 1358999999999999999 9999 899999
Q ss_pred EEEEEEeccc
Q psy2134 86 MVRAELYDQS 95 (104)
Q Consensus 86 ~V~a~~yd~~ 95 (104)
.|.+.+-...
T Consensus 74 ~l~v~~a~~~ 83 (93)
T 2cqh_A 74 IMEVDYSVSK 83 (93)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEccCc
Confidence 9999876543
No 153
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.22 E-value=3.1e-06 Score=59.00 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=52.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|...+... ...+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 40 ~t~~~l~~~f~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~l~~~~~~g~~l 100 (216)
T 2qfj_A 40 LGEDTIRQAFAPFGPIKSIDMSWDSVTM----KHKGFAFVEYEVPEAAQLALE---------------QMNSVMLGGRNI 100 (216)
T ss_dssp CCHHHHHHHHGGGSCEEEEEECCC-CC-----CCCSEEEEEESSHHHHHHHHH---------------HHSSCCCC-CCC
T ss_pred CCHHHHHHHHHhCCCEEEEEEeecCCCC----ccCceEEEEeCCHHHHHHHHH---------------HccCCeeCCeeE
Confidence 3467899999999999999997654321 124568999999999999999 889999999999
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+..
T Consensus 101 ~v~~~~ 106 (216)
T 2qfj_A 101 KVGRPS 106 (216)
T ss_dssp EEECCS
T ss_pred EEecCC
Confidence 886543
No 154
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.22 E-value=5e-06 Score=61.00 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=50.5
Q ss_pred HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134 13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY 92 (104)
Q Consensus 13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y 92 (104)
+.+-+++||.|.+|.|..... ..+-.||+|.+.++|.+|+. .|||..+.||.|.+.+-
T Consensus 30 L~~~F~~~G~i~~v~~~~~~~-------~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 30 LYAIFSQFGQILDILVSRSLK-------MRGQAFVIFKEVSSATNALR---------------SMQGFPFYDKPMRIQYA 87 (282)
T ss_pred HHHHHhccCCeEEEEEcCCCC-------cceEEEEEECCHHHHHHHHH---------------HhcCCeeCCcEEEEEEe
Confidence 447899999999998876332 23578999999999999999 99999999999999876
Q ss_pred cc
Q psy2134 93 DQ 94 (104)
Q Consensus 93 d~ 94 (104)
..
T Consensus 88 ~~ 89 (282)
T 3pgw_A 88 KT 89 (282)
T ss_pred cc
Confidence 44
No 155
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.22 E-value=8.3e-06 Score=59.85 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=57.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|.+|.|....... ...+-.||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 107 ~t~~~l~~~f~~~G~i~~~~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~---------------~l~~~~~~g~~i 167 (284)
T 3smz_A 107 LTQQQFEELVRPFGSLERCFLVYSERTG----QSKGYGFAEYMKKDSAARAKS---------------DLLGKPLGPRTL 167 (284)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEeeCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCEeCCcEE
Confidence 3467899999999999999887654321 234678999999999999999 999999999999
Q ss_pred EEEEecccc
Q psy2134 88 RAELYDQSL 96 (104)
Q Consensus 88 ~a~~yd~~~ 96 (104)
.+.+-+...
T Consensus 168 ~v~~a~~~~ 176 (284)
T 3smz_A 168 YVHWTDAGQ 176 (284)
T ss_dssp EEEECCGGG
T ss_pred EEEECCCCC
Confidence 998876543
No 156
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=1.2e-05 Score=51.35 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=52.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|...+.+. ...+-.||+|.+.++|.+|+. . |..+.|+.|
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~---------------~--~~~~~g~~l 85 (103)
T 2cqg_A 27 TTEQDLKEYFSTFGEVLMVQVKKDLKTG----HSKGFGFVRFTEYETQVKVMS---------------Q--RHMIDGRWC 85 (103)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHHH---------------S--CEEETTEEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC----CccceEEEEECCHHHHHHHHH---------------c--CCeeCCeEE
Confidence 3467889999999999999998765421 234678999999999999999 4 668899999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 86 ~v~~a~~ 92 (103)
T 2cqg_A 86 DCKLPNS 92 (103)
T ss_dssp EEECCCT
T ss_pred EEEecCC
Confidence 9887643
No 157
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.21 E-value=1.2e-05 Score=51.61 Aligned_cols=67 Identities=13% Similarity=0.270 Sum_probs=52.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++|| |.+|.|...+.+. ...+-.||+|.+.++|.+|+. |||..+.|+.|
T Consensus 27 ~t~~~l~~~F~~~g-i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~----------------l~g~~~~g~~l 85 (103)
T 2dng_A 27 TVQGDIDAIFKDLS-IRSVRLVRDKDTD----KFKGFCYVEFDEVDSLKEALT----------------YDGALLGDRSL 85 (103)
T ss_dssp CCHHHHHHHTTTSC-EEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHGG----------------GTTCEETTEEC
T ss_pred CCHHHHHHHHHhCC-ceEEEEeecCCCC----ccceEEEEEECCHHHHHHHHh----------------hCCCeECCeEE
Confidence 44678898999998 9999998765421 234678999999999999984 56778889999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 86 ~V~~a~~~ 93 (103)
T 2dng_A 86 RVDIAEGR 93 (103)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99876543
No 158
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=5.1e-06 Score=52.99 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=50.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.| .|..... ....+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 27 ~t~~~l~~~F~~~g~v---~~~~~~~-----g~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l 83 (101)
T 2fc9_A 27 ATEETLQEVFEKATFI---KVPQNQN-----GKSKGYAFIEFASFEDAKEALN---------------SCNKREIEGRAI 83 (101)
T ss_dssp CCHHHHHHHCSSCSEE---ECCBCSS-----SCBCSEEEEECSSHHHHHHHHH---------------HTSSEEETTEEE
T ss_pred CCHHHHHHHHHhCCEE---EEEECCC-----CCEeeEEEEEECCHHHHHHHHH---------------HhCCCEeCCeEE
Confidence 3467888889999988 2443321 1223568999999999999999 999999999999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 84 ~v~~a~~~ 91 (101)
T 2fc9_A 84 RLELQGPR 91 (101)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 99987543
No 159
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=4.4e-06 Score=54.29 Aligned_cols=69 Identities=14% Similarity=0.029 Sum_probs=53.8
Q ss_pred eehhHHHHHhhhCCceeE-EEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDDEAYGQVEK-VVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~k-V~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.-++|+++-+++||.|.+ |.|...... .-.+-.||+|++.++|.+|+. . ||..+.||.
T Consensus 27 ~te~~l~~~F~~~G~v~~~v~i~~~~~g-----~~~G~afV~F~~~~~a~~A~~---------------~-~~~~~~gr~ 85 (104)
T 1wg5_A 27 CSKEEIVQFFSGLEIVPNGMTLPVDFQG-----RSTGEAFVQFASQEIAEKALK---------------K-HKERIGHRY 85 (104)
T ss_dssp CCHHHHHHHTTTCCEEEEEEECCBCSSS-----CBCSEEEEEESSHHHHHHHHT---------------T-TTCCSSSSC
T ss_pred CCHHHHHHHHHhcCCcceeEEEEECCCC-----CcceEEEEEECCHHHHHHHHH---------------h-CcchhCCcE
Confidence 346789999999999987 777654221 123568999999999999999 7 888999999
Q ss_pred EEEEEeccccc
Q psy2134 87 VRAELYDQSLF 97 (104)
Q Consensus 87 V~a~~yd~~~f 97 (104)
|....-....+
T Consensus 86 i~v~~~~~~~~ 96 (104)
T 1wg5_A 86 IEIFKSSRAEV 96 (104)
T ss_dssp CEEEEECTTTS
T ss_pred EEEEECCHHHH
Confidence 98877655544
No 160
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.20 E-value=1.1e-06 Score=53.14 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=49.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+|.|+..+.+. ...+-.||+|.+.++|.+|+. . +|..+.|+.+
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~Ai~---------------~-~~~~~~g~~l 70 (75)
T 1iqt_A 11 TPEEKIREYFGGFGEVESIELPMDNKTN----KRRGFCFITFKEEEPVKKIME---------------K-KYHNVGLSKC 70 (75)
T ss_dssp CCHHHHHHHHHHHSCCSEECCCCSCCCS----SSCCCEEEECSSSHHHHHHHT---------------T-SSCCBTTBCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC----CcCCEEEEEECCHHHHHHHHH---------------h-CCCeECCEEE
Confidence 3467888889999999998887654421 123468999999999999998 5 7777888877
Q ss_pred EEE
Q psy2134 88 RAE 90 (104)
Q Consensus 88 ~a~ 90 (104)
...
T Consensus 71 ~v~ 73 (75)
T 1iqt_A 71 EIK 73 (75)
T ss_dssp CEE
T ss_pred EEE
Confidence 654
No 161
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.20 E-value=3.6e-06 Score=62.70 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=56.2
Q ss_pred eehhHHHHHhhhCC--ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 8 VIYNEKQSDDEAYG--QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG--~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
.=++|+++-+++|| .|.+|.|...+.+. .-.+-.||+|.+.++|.+|+. .|||..|.||
T Consensus 80 ~te~~L~~~F~~~G~~~v~~v~i~~d~~tg----~skGfaFV~f~~~~~a~~Ai~---------------~lng~~~~Gr 140 (229)
T 3q2s_C 80 TTDEDLTEAVHSLGVNDILEIKFFENRANG----QSKGFALVGVGSEASSKKLMD---------------LLPKRELHGQ 140 (229)
T ss_dssp CCHHHHHHHHHTTTCCCEEEEEEEECTTTC----CEEEEEEEEESCTTHHHHHHT---------------TSTTSCBTTB
T ss_pred CCHHHHHHHHHHHCCcceEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HcCCCeECCE
Confidence 34678999999999 99999998765421 234678999999999999999 9999999999
Q ss_pred EEEEEEec
Q psy2134 86 MVRAELYD 93 (104)
Q Consensus 86 ~V~a~~yd 93 (104)
.|.+.+-.
T Consensus 141 ~l~V~~a~ 148 (229)
T 3q2s_C 141 NPVVTPVN 148 (229)
T ss_dssp CCEEEECC
T ss_pred EeEEEECC
Confidence 99998754
No 162
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=9.1e-06 Score=52.21 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=51.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++|| |.+|.|...+.... .-.+-.||+|.+.++|.+|+. |||..+.|+.|
T Consensus 27 ~t~~~l~~~F~~~G-i~~v~i~~~~~~~g---~~~g~afV~f~~~~~a~~A~~----------------l~g~~~~g~~l 86 (104)
T 1wi8_A 27 VTEESIKEFFRGLN-ISAVRLPREPSNPE---RLKGFGYAEFEDLDSLLSALS----------------LNEESLGNKRI 86 (104)
T ss_dssp CCHHHHHHHTTTSC-EEEEECCBCSSCTT---SBCSCEEEEESSHHHHHHHHG----------------GGTCEETTEEC
T ss_pred CCHHHHHHHHHHCC-ceEEEEecCCCCCC---CcCeEEEEEECCHHHHHHHHh----------------cCCCEeCCcEE
Confidence 34678999999999 99999987654211 123458999999999999983 55777789999
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
.+.+-...
T Consensus 87 ~V~~a~~~ 94 (104)
T 1wi8_A 87 RVDVADQA 94 (104)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 98876553
No 163
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.17 E-value=2.9e-06 Score=61.47 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=53.0
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++||.|.+|.|...+. +-.||+|.+.++|.+|+. .|||..+.|+.|.
T Consensus 48 te~~L~~~F~~~G~i~~v~i~~~~~---------g~afV~F~~~~~A~~Ai~---------------~l~g~~~~g~~l~ 103 (229)
T 2adc_A 48 TPQSLFILFGVYGDVQRVKILFNKK---------ENALVQMADGNQAQLAMS---------------HLNGHKLHGKPIR 103 (229)
T ss_dssp CHHHHHHHHHHHTCEEEEEECCTTS---------CCEEEEESCHHHHHHHHH---------------HHTTCBCSSSBCE
T ss_pred CHHHHHHHHHhCCCeEEEEEEECCC---------CEEEEEECCHHHHHHHHH---------------HhCCCeECCeEEE
Confidence 4578888899999999999987542 348999999999999999 8999999999999
Q ss_pred EEEec
Q psy2134 89 AELYD 93 (104)
Q Consensus 89 a~~yd 93 (104)
+.+-.
T Consensus 104 v~~a~ 108 (229)
T 2adc_A 104 ITLSK 108 (229)
T ss_dssp EECCS
T ss_pred EEEec
Confidence 98764
No 164
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.17 E-value=1.7e-06 Score=60.33 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=53.1
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++++++-+++||.|.+|.|...+. +-.||+|.+.++|.+|+. .|||..+.|+.+.
T Consensus 17 ~~~~l~~~F~~~G~i~~v~i~~~~~---------g~afV~f~~~~~a~~A~~---------------~l~~~~~~g~~l~ 72 (198)
T 1qm9_A 17 TPQSLFILFGVYGDVQRVKILFNKK---------ENALVQMADGNQAQLAMS---------------HLNGHKLHGKPIR 72 (198)
T ss_dssp CHHHHHHHHHTTCCCSEEECSTTCS---------SCCEEECTTTHHHHHHHH---------------HHTTCCCSSCCCE
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCC---------CEEEEEECCHHHHHHHHH---------------HhCCCeecCeEEE
Confidence 3578888899999999998877542 247999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
+.+-..
T Consensus 73 v~~a~~ 78 (198)
T 1qm9_A 73 ITLSKH 78 (198)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 987643
No 165
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.17 E-value=4.2e-06 Score=52.80 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=50.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++||.|..+ ... ....+..||+|.+.++|.+|+. .|||..+.|+.|
T Consensus 28 ~t~~~l~~~F~~~g~v~~~--~~~-------~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l 83 (96)
T 1fjc_A 28 ITEDELKEVFEDALEIRLV--SQD-------GKSKGIAYIEFKSEADAEKNLE---------------EKQGAEIDGRSV 83 (96)
T ss_dssp CCHHHHHHHHCSEEEECCE--EET-------TEEEEEEEEEESSHHHHHHHHH---------------HTTEEEETTEEE
T ss_pred CCHHHHHHHHhhCCcEEEe--CCC-------CCcceEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence 3467888889999998764 111 1234679999999999999999 999999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-.+
T Consensus 84 ~v~~a~~ 90 (96)
T 1fjc_A 84 SLYYTGE 90 (96)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 9987643
No 166
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.15 E-value=6.5e-06 Score=55.79 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=51.4
Q ss_pred eehhHHHHHhhhCCceeEE--------EEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcC
Q psy2134 8 VIYNEKQSDDEAYGQVEKV--------VIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV--------~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnG 79 (104)
.-.+++++-+++||.|..+ .+..... ..+-.||.|.+.++|.+|+. .|||
T Consensus 57 ~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~-------~~g~afV~f~~~~~A~~Ai~---------------~lng 114 (143)
T 3egn_A 57 VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGR-------MKGQAFIGLPNEKAAAKALK---------------EANG 114 (143)
T ss_dssp CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETT-------TEEEEEEECSSHHHHHHHHH---------------HHTT
T ss_pred CCHHHHHHHHHHhCCcccccccceeeEEeccCCC-------cccEEEEEeCCHHHHHHHHH---------------HhCC
Confidence 3467888899999998763 3333222 34679999999999999999 9999
Q ss_pred ceeCCeEEEEEEec
Q psy2134 80 RFFAGRMVRAELYD 93 (104)
Q Consensus 80 R~F~GR~V~a~~yd 93 (104)
..+.|+.|.+.+-.
T Consensus 115 ~~~~g~~l~V~~a~ 128 (143)
T 3egn_A 115 YVLFGKPMVVQFAR 128 (143)
T ss_dssp BEETTEECEEEECC
T ss_pred CEeCCcEEEEEECC
Confidence 99999999998763
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.12 E-value=2.1e-05 Score=53.97 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=53.4
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++||.|.+|.|...+.+. ...+-.||+|.+.++|.+|+. . +|..+.|+.+.
T Consensus 26 te~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 26 TDESLRSHFEQWGTLTDCVVMRDPNTK----RSRGFGFVTYATVEEVDAAMN---------------A-RPHKVDGRVVE 85 (196)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------T-CSCEETTEECE
T ss_pred CHHHHHHHHHhCCCEEEEEEEEcCCCC----CccceEEEEeCCHHHHHHHHh---------------c-CCCEECCEEee
Confidence 467889999999999999998765421 234678999999999999999 5 78889999999
Q ss_pred EEEec
Q psy2134 89 AELYD 93 (104)
Q Consensus 89 a~~yd 93 (104)
..+..
T Consensus 86 v~~~~ 90 (196)
T 1l3k_A 86 PKRAV 90 (196)
T ss_dssp EEECC
T ss_pred eeccc
Confidence 88754
No 168
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=6.1e-06 Score=54.41 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=53.6
Q ss_pred eehhHHHHHhhhCCce-eEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDDEAYGQV-EKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V-~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.-++|+++-+++||.| .+|.|...+.. ...+-.||+|.+.++|.+|+. . ||..+.||.
T Consensus 27 ~t~~~l~~~F~~~g~v~~~v~i~~d~~g-----~~~G~afV~F~~~~~a~~Al~---------------~-~~~~~~gr~ 85 (114)
T 2cpy_A 27 ITKMDVLQFLEGIPVDENAVHVLVDNNG-----QGLGQALVQFKNEDDARKSER---------------L-HRKKLNGRE 85 (114)
T ss_dssp SCHHHHHHHTTTSCCCSTTEEECCCTTS-----SCSSCEEEECSSHHHHHHHGG---------------G-CSEEETTEE
T ss_pred CCHHHHHHHHHhCCCcCCeEEEEECCCC-----CcceEEEEEECCHHHHHHHHH---------------h-CCCccCCeE
Confidence 3467888889999999 78888765421 123468999999999999998 7 999999999
Q ss_pred EEEEEeccc
Q psy2134 87 VRAELYDQS 95 (104)
Q Consensus 87 V~a~~yd~~ 95 (104)
|.+.+-...
T Consensus 86 i~v~~a~~~ 94 (114)
T 2cpy_A 86 AFVHVVTLE 94 (114)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999876543
No 169
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=3.8e-06 Score=54.62 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=50.9
Q ss_pred eehhHHHHHhhhCCce----eEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134 8 VIYNEKQSDDEAYGQV----EKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA 83 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V----~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~ 83 (104)
.-++|+++-+++||.| ..+.+... . ..+-.||+|.+.++|.+|+. .|||..+.
T Consensus 37 ~t~~~l~~~f~~~G~v~~~~~~~~~~~g-~-------~~g~afV~f~~~~~a~~Ai~---------------~l~g~~~~ 93 (115)
T 2cpx_A 37 VTERDLVSLFARFQEKKGPPIQFRMMTG-R-------MRGQAFITFPNKEIAWQALH---------------LVNGYKLY 93 (115)
T ss_dssp CCHHHHHHHTHHHHHSSSSCCEEEEECS-S-------SCSEEEEECSSHHHHHHHHH---------------HSTTCBCS
T ss_pred CCHHHHHHHHHHhCCccceEEEEEcCCC-c-------cceEEEEEECCHHHHHHHHH---------------HhCCCEeC
Confidence 3467888889999999 44444411 1 13468999999999999999 99999999
Q ss_pred CeEEEEEEeccc
Q psy2134 84 GRMVRAELYDQS 95 (104)
Q Consensus 84 GR~V~a~~yd~~ 95 (104)
|+.|.+.+-...
T Consensus 94 g~~l~v~~a~~~ 105 (115)
T 2cpx_A 94 GKILVIEFGKNK 105 (115)
T ss_dssp SCBCEEEECCCC
T ss_pred CcEEEEEEccCC
Confidence 999999986543
No 170
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.09 E-value=4.8e-06 Score=53.63 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=47.0
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++|| |.+|.|....... . ...+-.||+|.+.++|.+|+ .| ||..|.||.|.
T Consensus 32 t~~~l~~~F~~~G-i~~v~i~~~~~~~-g--~~~g~afV~f~~~~~a~~Ai-~l---------------~g~~~~g~~l~ 91 (100)
T 2j76_E 32 TEESIKEFFRGLN-ISAVRLPREPSNP-E--RLKGFGYAEFEDLDSLLSAL-SL---------------NEESLGNRRIR 91 (100)
T ss_dssp SSSHHHHHSCSSC-EEEEECSCCTTTT-C--CCCSCEEEEECCHHHHHHHH-HT---------------TTCCBTTBCCC
T ss_pred CHHHHHHHHHhcC-CeEEEEEecCCcC-C--ccCeEEEEEECCHHHHHHHH-hc---------------CCCEECCeEEE
Confidence 3578888999999 9999987754211 1 12346899999999999999 44 45556677777
Q ss_pred EEEec
Q psy2134 89 AELYD 93 (104)
Q Consensus 89 a~~yd 93 (104)
+.+-.
T Consensus 92 V~~a~ 96 (100)
T 2j76_E 92 VDVAD 96 (100)
T ss_dssp CEECC
T ss_pred EEecc
Confidence 66543
No 171
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.07 E-value=6.1e-06 Score=63.44 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=51.7
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee------
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF------ 82 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F------ 82 (104)
.++++++..++||.|++|.|...+ +-.||+|.+.++|+.|+. +|||+.+
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~~k----------G~AFV~F~~~~~Ae~A~~---------------am~g~~l~~~~~~ 210 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVESK----------NCGFVKFKYQANAEFAKE---------------AMSNQTLLLPSDK 210 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEGGG----------TEEEEEESSHHHHHHHHH---------------HHTTCCCCCTTST
T ss_pred cHHHHHHHHHccCCEEEEEEECCC----------CEEEEEeCCHHHHHHHHH---------------HhCCCEEeccccc
Confidence 588999999999999999987532 368999999999999999 8888888
Q ss_pred ------CCeEEEEEEec
Q psy2134 83 ------AGRMVRAELYD 93 (104)
Q Consensus 83 ------~GR~V~a~~yd 93 (104)
.|+.|.+.+-.
T Consensus 211 e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWAN 227 (240)
T ss_dssp TGGGGGGSCCCEEEECC
T ss_pred cccccCCCCEEEEEEcc
Confidence 88888887643
No 172
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.34 E-value=4.9e-07 Score=59.47 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=52.9
Q ss_pred ehhHHHHHhhhCCceeE--------EEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc
Q psy2134 9 IYNEKQSDDEAYGQVEK--------VVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR 80 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~k--------V~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR 80 (104)
-.+|+++-+++||.|.. |.|+..+.. ....+-.||+|.+.++|.+|+. .|||.
T Consensus 20 t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~----g~~~g~afV~f~~~~~A~~Ai~---------------~l~g~ 80 (116)
T 2lcw_A 20 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRET----GKLKGEATVSFDDPPSAKAAID---------------WFDGK 80 (116)
Confidence 35678888999999988 777665332 1123568999999999999999 89999
Q ss_pred eeCCeEEEEEEecc
Q psy2134 81 FFAGRMVRAELYDQ 94 (104)
Q Consensus 81 ~F~GR~V~a~~yd~ 94 (104)
.+.|+.|.+.+-..
T Consensus 81 ~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 81 EFSGNPIKVSFATR 94 (116)
Confidence 99999999887543
No 173
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=2.4e-05 Score=49.75 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=48.4
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=++|+++-+++|+. |.|...... ....+-.||+|.+.++|.+|+. .|||..+.|+.|.
T Consensus 28 t~~~l~~~F~~~~~---~~~~~~~~~----~~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 28 TEETLKESFDGSVR---ARIVTDRET----GSSKGFGFVDFNSEEDAKAAKE---------------AMEDGEIDGNKVT 85 (102)
T ss_dssp CHHHHHHTSTTCSE---EEEEECSSS----CSEEEEEEEECSSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHhcCCeE---EEEEecCCC----CCcCcEEEEEECCHHHHHHHHH---------------HhCCCeECCeEEE
Confidence 45778877887754 445443321 1234679999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
+.+-..
T Consensus 86 V~~a~~ 91 (102)
T 2fc8_A 86 LDWAKP 91 (102)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 988644
No 174
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=4.9e-05 Score=47.49 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=50.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-.+|+++-+++| .|.+|.|...... ...+..||+|.+.++|.+|+. |||..+.||.|
T Consensus 22 ~t~~~l~~~F~~~-~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~----------------~~g~~~~gr~i 79 (91)
T 2dgw_A 22 VTEKNVMEFLAPL-KPVAIRIVRNAHG-----NKTGYIFVDFSNEEEVKQALK----------------CNREYMGGRYI 79 (91)
T ss_dssp CCHHHHHHHHTTS-CCSEEEEEECTTS-----CEEEEEEEECSSHHHHHHHHH----------------SCSEEETTEEE
T ss_pred CCHHHHHHHHhhC-CceEEEEEECCCC-----CCceEEEEEECCHHHHHHHHH----------------hCCceeCCcEE
Confidence 3467888889999 9999999876221 235679999999999999987 56777788999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
...+-..
T Consensus 80 ~v~~a~~ 86 (91)
T 2dgw_A 80 EVFREKS 86 (91)
T ss_dssp EEEEESS
T ss_pred EEEECCc
Confidence 8887643
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.03 E-value=3e-05 Score=56.18 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=51.6
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-.+++++-+++||.|..|.|+..... ...|-.||+|++.++|.+|+. .++. .|.||.|.
T Consensus 122 t~~~L~~~F~~~G~v~~v~i~~~~~~-----~~kG~aFVeF~~~e~A~~A~~---------------~~~~-~~~Gr~l~ 180 (193)
T 2voo_A 122 TLDDIKEWLEDKGQVLNIQMRRTLHK-----AFKGSIFVVFDSIESAKKFVE---------------TPGQ-KYKETDLL 180 (193)
T ss_dssp CHHHHHHHHTTSCCEEEEEEEECTTC-----CEEEEEEEEESSHHHHHHHHH---------------CTTC-EETTEECE
T ss_pred CHHHHHHHHhcCCCEEEEEEEECCCC-----CcccEEEEEECCHHHHHHHHH---------------hCCC-eECCEEEE
Confidence 45788888999999999999875431 235789999999999999999 7765 89999998
Q ss_pred EEE
Q psy2134 89 AEL 91 (104)
Q Consensus 89 a~~ 91 (104)
+..
T Consensus 181 V~~ 183 (193)
T 2voo_A 181 ILF 183 (193)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 176
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.02 E-value=1.6e-06 Score=58.47 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=52.9
Q ss_pred ehhHHHHHhhhCCceeE--EEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc----ee
Q psy2134 9 IYNEKQSDDEAYGQVEK--VVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR----FF 82 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~k--V~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR----~F 82 (104)
-++|+++-+++||.|.. |.|...+... ...+-.||+|.+. +|.+|+. .|||. .+
T Consensus 36 te~~L~~~F~~~G~v~~~~v~i~~d~~tg----~~rG~aFV~f~~~-~a~~Ai~---------------~l~g~~~~~~~ 95 (131)
T 2m2b_A 36 TMDSILGALAPYAVLSSSNVRVIKDKQTQ----LNRGFAFIQLSTI-EAAQLLQ---------------ILQALHPPLTI 95 (131)
T ss_dssp CSHHHHHHHGGGCCCCTTTEECCBCSSSS----SBCSCEEEECCHH-HHHHHHH---------------HHTTCCCSCCG
T ss_pred CHHHHHHHHHHhCCcceeeEEEEEcCCCC----CcceEEEEEECCH-HHHHHHH---------------HhcCCCCCccC
Confidence 46789999999999966 8887765321 1235689999999 9999999 88898 88
Q ss_pred CCeEEEEEEecc
Q psy2134 83 AGRMVRAELYDQ 94 (104)
Q Consensus 83 ~GR~V~a~~yd~ 94 (104)
.||.|.+.+-..
T Consensus 96 ~gr~l~V~~a~~ 107 (131)
T 2m2b_A 96 DGKTINVEFAKG 107 (131)
T ss_dssp GGCCCCCEECCC
T ss_pred CCEEEEEEECCC
Confidence 999998887644
No 177
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1.5e-05 Score=53.36 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=47.3
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-++++++-+++||.|..|.|...+ .+-.||+|.+.++|..|+. .++| +.|+.++
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~---------rGfaFVeF~~~~~A~~Ai~---------------~~~~--~~g~~l~ 83 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKK---------PGTAVVEFATVKAAELAVQ---------------NEVG--LVDNPLK 83 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSS---------SSEEEEEESCHHHHHHHHH---------------TCCB--CSSSBCE
T ss_pred CHHHHHHHHHhcCCEEEEEEccCC---------CCEEEEEECCHHHHHHHHH---------------hcCC--CCCCeEE
Confidence 367889889999999999987422 2468999999999999999 6555 5688888
Q ss_pred EEEec
Q psy2134 89 AELYD 93 (104)
Q Consensus 89 a~~yd 93 (104)
..+-.
T Consensus 84 V~~a~ 88 (100)
T 2d9o_A 84 ISWLE 88 (100)
T ss_dssp EECSS
T ss_pred EEEcc
Confidence 77653
No 178
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.01 E-value=2.4e-05 Score=57.74 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=52.8
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
=.+|+++-+++||.|.+|.|...+ +-.||+|.+.++|.+|+. .|||..+.|+.+.
T Consensus 35 te~~l~~~F~~~G~i~~v~i~~~k----------g~afV~f~~~~~A~~A~~---------------~l~g~~i~g~~l~ 89 (261)
T 3sde_A 35 TEEDFKRLFERYGEPSEVFINRDR----------GFGFIRLESRTLAEIAKA---------------ELDGTILKSRPLR 89 (261)
T ss_dssp CHHHHHHHTGGGCCCSEEEEETTT----------TEEEEECSSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCC----------cEEEEEECCHHHHHHHHH---------------HcCCcEECCceeE
Confidence 467889899999999999986532 358999999999999999 9999999999999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
+.+-..
T Consensus 90 v~~a~~ 95 (261)
T 3sde_A 90 IRFATH 95 (261)
T ss_dssp EEECCC
T ss_pred eeeccc
Confidence 987643
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=5.3e-06 Score=57.07 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=48.1
Q ss_pred eehhHHHHHhhhC-CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDDEAY-GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~ky-G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.|.+.+++=+++| |+|.+|. + |..||.|.+.++|.+|++ .|||..+.||.
T Consensus 25 ~lk~~L~~lF~~yGG~Vl~Vt-------------g-G~AfV~F~~~esA~~A~~---------------~l~G~~l~gr~ 75 (96)
T 2diu_A 25 SVSNRLRRLSDNCGGKVLSIT-------------G-CSAILRFINQDSAERAQK---------------RMENEDVFGNR 75 (96)
T ss_dssp HHHHHHHHHHHTTTCCEEECC-------------T-TCEEEEESSHHHHHHHHH---------------HHTTCCSSSSC
T ss_pred HHHHHHHHHHHHcCCeeEEEe-------------c-CEEEEEECCHHHHHHHHH---------------HhcCCccCCce
Confidence 4566677889999 5998861 0 458999999999999999 99999999999
Q ss_pred EEEEEec
Q psy2134 87 VRAELYD 93 (104)
Q Consensus 87 V~a~~yd 93 (104)
|+..|-.
T Consensus 76 i~v~~A~ 82 (96)
T 2diu_A 76 IIVSFTP 82 (96)
T ss_dssp CEEESSC
T ss_pred EEEEecC
Confidence 9998754
No 180
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.99 E-value=3.1e-05 Score=47.65 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=44.6
Q ss_pred ehhHHHHHhhhC----C-------ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh
Q psy2134 9 IYNEKQSDDEAY----G-------QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL 77 (104)
Q Consensus 9 i~~ev~~Ec~ky----G-------~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L 77 (104)
=.+|+++-+++| | .|.++.|..++ +-.||+|.+.++|.+|+ . |
T Consensus 19 t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k----------g~afV~f~~~~~a~~A~-~---------------l 72 (87)
T 2hzc_A 19 TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----------NFAFLEFRSVDETTQAM-A---------------F 72 (87)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS----------SEEEEEESSHHHHHHHG-G---------------G
T ss_pred CHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC----------cEEEEEcCCHHHHHHHH-h---------------c
Confidence 467888889999 8 99998887542 46899999999999998 3 5
Q ss_pred cCceeCCeEEEEE
Q psy2134 78 NGRFFAGRMVRAE 90 (104)
Q Consensus 78 nGR~F~GR~V~a~ 90 (104)
||..+.||.+...
T Consensus 73 ~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 73 DGIIFQGQSLKIR 85 (87)
T ss_dssp TTCEETTEECEEE
T ss_pred CCCEECCeEEEEe
Confidence 5666778877764
No 181
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.99 E-value=2.4e-05 Score=52.22 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=53.3
Q ss_pred eehhHHHHHhhhCCc---eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC
Q psy2134 8 VIYNEKQSDDEAYGQ---VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG 84 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~---V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G 84 (104)
.-++|+++-+++||. |..|.|...+.. .-.+-.||+|.+.++|.+|+. |||..+.|
T Consensus 29 ~te~~l~~~F~~~G~~~~v~~v~i~~~~~g-----~~~G~afV~F~~~~~a~~Al~----------------~~g~~~~g 87 (118)
T 2db1_A 29 CSIEDVQNFLSDCTIHDGVAGVHFIYTREG-----RQSGEAFVELESEDDVKLALK----------------KDRESMGH 87 (118)
T ss_dssp CCHHHHHHHTTTSCBTTGGGGEEEEECSSS-----CEEEEEEEEBSSHHHHHHHGG----------------GTTEEETT
T ss_pred CCHHHHHHHHHHcCCccCceeEEEEECCCC-----CCCeEEEEEECCHHHHHHHHh----------------cCCCeECC
Confidence 446789999999999 889988765431 235679999999999999987 57888899
Q ss_pred eEEEEEEeccc
Q psy2134 85 RMVRAELYDQS 95 (104)
Q Consensus 85 R~V~a~~yd~~ 95 (104)
|.|....-...
T Consensus 88 r~i~V~~a~~~ 98 (118)
T 2db1_A 88 RYIEVFKSHRT 98 (118)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEECCHH
Confidence 99998765443
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.98 E-value=1.9e-05 Score=58.18 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=52.7
Q ss_pred eehhHHHHHhhhCC-ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134 8 VIYNEKQSDDEAYG-QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM 86 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG-~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~ 86 (104)
.-.+++++-+++|| .|.+|.|...... ...+-.||+|.+.++|.+|+. .|||..+.|+.
T Consensus 129 ~t~~~l~~~f~~~G~~i~~v~i~~~~~~-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~ 188 (292)
T 2ghp_A 129 YTQRNIRDLLQDINVVALSIRLPSLRFN-----TSRRFAYIDVTSKEDARYCVE---------------KLNGLKIEGYT 188 (292)
T ss_dssp CCHHHHHHHHHHTTCCCCEEECC------------CCEEEEECSSHHHHHHHHH---------------HHTTCEETTEE
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEeCCCC-----CcceEEEEEECCHHHHHHHHH---------------HhCCCEeCCcE
Confidence 34678999999999 9999988765431 123568999999999999999 99999999999
Q ss_pred EEEEEecc
Q psy2134 87 VRAELYDQ 94 (104)
Q Consensus 87 V~a~~yd~ 94 (104)
|...+-..
T Consensus 189 l~v~~a~~ 196 (292)
T 2ghp_A 189 LVTKVSNP 196 (292)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99987643
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.97 E-value=2.7e-05 Score=57.54 Aligned_cols=67 Identities=27% Similarity=0.303 Sum_probs=52.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh-cCceeC---
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL-NGRFFA--- 83 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L-nGR~F~--- 83 (104)
.-.+++++-+++||.|.+|.|..+... ...+..||+|.+.++|.+|+. .| +|.++.
T Consensus 108 ~t~~~l~~~F~~~G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~A~~A~~---------------~l~~~~~~~~~~ 167 (261)
T 3sde_A 108 VSNELLEQAFSQFGPVEKAVVVVDDRG-----RATGKGFVEFAAKPPARKALE---------------RCGDGAFLLTTT 167 (261)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEEETTS-----CEEEEEEEEESSHHHHHHHHH---------------HHHHSCEESSSS
T ss_pred CCHHHHHHHHHhcCCeEEEEeeeCCCC-----CcCcEEEEEeCCHHHHHHHHH---------------HhcCCeEEecCC
Confidence 346789999999999999999876321 235678999999999999999 77 444554
Q ss_pred CeEEEEEEecc
Q psy2134 84 GRMVRAELYDQ 94 (104)
Q Consensus 84 GR~V~a~~yd~ 94 (104)
||.|.+.+...
T Consensus 168 ~r~i~v~~~~~ 178 (261)
T 3sde_A 168 PRPVIVEPMEQ 178 (261)
T ss_dssp CCBCEEEECCC
T ss_pred CceEEEeeccc
Confidence 88888887754
No 184
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=3.5e-05 Score=48.70 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=46.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|.+| +..... +. -.||+|.+.++|.+|+. |||..+.|+.|
T Consensus 20 ~t~~~l~~~F~~~G~v~~v-~~~~~~-------g~-~afV~f~~~~~a~~ai~----------------l~g~~~~g~~l 74 (94)
T 2e5g_A 20 VDSAQLSEYFLAFGPVASV-VMDKDK-------GV-FAIVEMGDVGAREAVLS----------------QSQHSLGGHRL 74 (94)
T ss_dssp CCHHHHHHHGGGTSCEEEE-EECSSS-------CC-EEEEEESSHHHHHHHHT----------------CSCCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEE-EEcCCC-------Cc-EEEEEECCHHHHHHHHh----------------cCCeEECCEEE
Confidence 3467889999999999997 333221 11 68999999999999987 56777788888
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
.+.+-..
T Consensus 75 ~V~~a~~ 81 (94)
T 2e5g_A 75 RVRPREQ 81 (94)
T ss_dssp CCBCSCC
T ss_pred EEEECCc
Confidence 8765443
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.92 E-value=3.8e-05 Score=51.42 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=41.2
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhc
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALN 63 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~ 63 (104)
=++|+++-+++||.|.+|.|...+.+.. ....+-.||+|.+.++|.+|+..||
T Consensus 16 te~~l~~~F~~~G~i~~v~i~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~ 68 (175)
T 3nmr_A 16 SEKDLRELFEQYGAVYEINVLRDRSQNP--PQSKGCCFVTFYTRKAALEAQNALH 68 (175)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEECSSSS--CEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCEEEEEEEecCCCCC--CCcceEEEEEECCHHHHHHHHHHhc
Confidence 3678888899999999999987654310 1235678999999999999999333
No 186
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=6e-05 Score=51.30 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=49.8
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.|..++....+.||.|..|+|..+ +.||+|.+.++|.+|+. |||-.+.||.+
T Consensus 27 ~l~~~L~~~F~~~G~Vi~vr~~~d------------~~fVtF~d~~sAlaAi~----------------mnG~~v~Gr~L 78 (91)
T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVED------------KMWVTFLEGSSALNVLS----------------LNGKELLNRTI 78 (91)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSS------------SEEEEESSHHHHHHGGG----------------GTTCEETTEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEEecC------------CEEEEECChHHHHHHHh----------------cCCeEeCCeEE
Confidence 467789999999999999988763 26999999888888776 88999999999
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
+..+=.+
T Consensus 79 kV~lkt~ 85 (91)
T 2dnr_A 79 TIALKSP 85 (91)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9887543
No 187
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=6.1e-05 Score=50.59 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=49.1
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-++|+++-++.| .|.+|.|...... .-.+-.||+|.+.++|.+|+. |||..+.||.|.
T Consensus 29 te~dl~~~F~~~-~v~~v~i~~d~~g-----~~~G~afV~F~~~~~a~~Al~----------------~~~~~~~gr~i~ 86 (109)
T 2dnn_A 29 MENDVRDFFHGL-RVDAVHLLKDHVG-----RNNGNGLVKFLSPQDTFEALK----------------RNRMLMIQRYVE 86 (109)
T ss_dssp CHHHHHHHTTTS-CCCEEEECCCTTC-----CCCSEEEEECSSHHHHHHHHH----------------TTTEEETTEEEE
T ss_pred CHHHHHHHhccC-CeeEEEEEECCCC-----CCCeEEEEEECCHHHHHHHHh----------------cCCCeECCeEEE
Confidence 467899999999 8999988765431 123568999999999999986 578888899888
Q ss_pred EEEec
Q psy2134 89 AELYD 93 (104)
Q Consensus 89 a~~yd 93 (104)
...-.
T Consensus 87 V~~a~ 91 (109)
T 2dnn_A 87 VSPAT 91 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 75443
No 188
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=5.2e-05 Score=49.58 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=49.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.| +|.|...+.. .-.+-.||+|++.++|.+|+. . ||..+.||.|
T Consensus 27 ~te~~l~~~F~~~G~~-~v~i~~d~~g-----~~~G~afV~F~~~~~a~~Al~---------------~-~~~~~~gr~i 84 (102)
T 1wez_A 27 ATENDIYNFFSPLNPM-RVHIEIGPDG-----RVTGEADVEFATHEDAVAAMA---------------K-DKANMQHRYV 84 (102)
T ss_dssp CCHHHHHHSSCSCCCS-EEEEEESSSS-----CEEEEEEEECSSSHHHHHHHT---------------T-SSCCSSSSCC
T ss_pred CCHHHHHHHHHHcCce-EEEEEECCCC-----CEeeEEEEEECCHHHHHHHHH---------------h-CCCeECCcEE
Confidence 3468888889999955 8888775421 234678999999999999997 4 7777788888
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
....-..
T Consensus 85 ~V~~~~~ 91 (102)
T 1wez_A 85 ELFLNST 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 8765443
No 189
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.81 E-value=5.7e-05 Score=60.72 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=38.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhcc
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNG 64 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~ 64 (104)
.=++|+++.+++||.|.+|.|+.. .+-.||+|++.++|++|+++|||
T Consensus 32 ~te~~L~~~F~~~G~V~~v~~~~~----------kgfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 32 VSRNQLLPVLEKCGLVDALLMPPN----------KPYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCTT----------CSEEEEEESSHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHhcCCeEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCC
Confidence 446889999999999999887641 24789999999999999993333
No 190
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.79 E-value=4.4e-05 Score=53.29 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=51.0
Q ss_pred eehhHHHHHhhhCCc---eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC
Q psy2134 8 VIYNEKQSDDEAYGQ---VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG 84 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~---V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G 84 (104)
.-++|+++-++.||. |.+|.|...+.. ...+-.||+|++.++|.+|+. |||..+.|
T Consensus 56 ~te~dL~~~F~~~G~v~~v~~v~i~~d~~g-----~srG~aFV~F~~~e~a~~Al~----------------~~g~~l~g 114 (136)
T 2hgl_A 56 CSVEDVQNFLSDCTIHDGAAGVHFIYTREG-----RQSGEAFVELGSEDDVKMALK----------------KDRESMGH 114 (136)
T ss_dssp CCHHHHHHHTTTCCCSSSSTTEEEEECSSS-----CEEEEEEEECSSHHHHHHHHT----------------TTEEESSS
T ss_pred CCHHHHHHHHHHhCCcCceeEEEEEECCCC-----CCCeEEEEEECCHHHHHHHHh----------------cCCCEECC
Confidence 446789999999999 888888765431 235678999999999999987 56667778
Q ss_pred eEEEEEEecc
Q psy2134 85 RMVRAELYDQ 94 (104)
Q Consensus 85 R~V~a~~yd~ 94 (104)
|.|....-..
T Consensus 115 r~i~V~~a~~ 124 (136)
T 2hgl_A 115 RYIEVFKSHR 124 (136)
T ss_dssp SEEEEEECCH
T ss_pred EEEEEEECCh
Confidence 8888765443
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.77 E-value=6.4e-05 Score=54.68 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=46.3
Q ss_pred ehhHHHHHhhhCCce--eEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 9 IYNEKQSDDEAYGQV--EKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V--~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
=.+++++-++.||.| .+|.|+..... ..+--||+|++.++|.+|+. .|||..+.|+
T Consensus 136 t~~~L~~~F~~~G~v~~~~v~~~~~~~~------~~g~gfV~f~~~~~A~~Ai~---------------~lng~~~~g~ 193 (205)
T 3tyt_A 136 TEENFFEICDELGVKRPTSVKVFSGKSE------RSSSGLLEWDSKSDALETLG---------------FLNHYQMKNP 193 (205)
T ss_dssp CHHHHHHHHHHHTCCCCSEEEECSCCSS------SSEEEEEECSSHHHHHHHHH---------------HHTTCEECCS
T ss_pred CHHHHHHHHHhcCCcceEEEEEEcCCCC------CceEEEEEeCCHHHHHHHHH---------------HhCCCCccCC
Confidence 367899999999999 89998875421 12568999999999999999 8888888887
No 192
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.77 E-value=7.1e-05 Score=47.67 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=39.2
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
.-++|+++-+++||.|.+|.|..... ....+-.||+|.+.++|.+|+.
T Consensus 21 ~t~~~l~~~F~~~G~i~~v~i~~~~~-----g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 21 MDETEIRSFFARYGSVKEVKIITDRT-----GVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTT-----SCEEEEEEEEESSCCCHHHHTT
T ss_pred CCHHHHHHHHHhCCCeEEEEEEECCC-----CCccceEEEEECCHHHHHHHHh
Confidence 34678888899999999999987652 1235678999999999999887
No 193
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=3.1e-05 Score=51.53 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=48.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++||.|..+.+...... ..-.+-.||+|.+.++|.+|+. |||..+.||.|
T Consensus 37 ~te~~l~~~F~~~G~v~~~~~~~~~~~----g~~~G~afV~F~~~~~a~~Al~----------------~~g~~~~gr~i 96 (124)
T 1wel_A 37 AENKHVIDFFKKLDIVEDSIYIAYGPN----GKATGEGFVEFRNEADYKAALC----------------RHKQYMGNRFI 96 (124)
T ss_dssp CCHHHHHHHSCSSCBCTTTCEEEECTT----SSEEEEEEEEBSSSHHHHHHHT----------------SCSBCSTTSCB
T ss_pred CCHHHHHHHHHhcCCccceEEEEECCC----CCCCeEEEEEECCHHHHHHHHH----------------hCCCeECCcEE
Confidence 346788988999999987333322221 1235679999999999999998 46666678888
Q ss_pred EEEEeccc
Q psy2134 88 RAELYDQS 95 (104)
Q Consensus 88 ~a~~yd~~ 95 (104)
...+-...
T Consensus 97 ~V~~a~~~ 104 (124)
T 1wel_A 97 QVHPITKK 104 (124)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 88765543
No 194
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=5.2e-05 Score=52.12 Aligned_cols=65 Identities=12% Similarity=0.020 Sum_probs=49.9
Q ss_pred eehhHHHHHhhhCCce----eEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134 8 VIYNEKQSDDEAYGQV----EKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA 83 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V----~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~ 83 (104)
.=++||++-+++||.| ..|.|...... .-.+-.||+|++.++|.+|+. . ||..+.
T Consensus 35 ~te~dl~~~F~~~g~v~g~v~~v~i~~d~~g-----r~~G~aFV~F~~~~~A~~Al~---------------~-~~~~l~ 93 (123)
T 2dha_A 35 ATAEEVVAFFGQHCPITGGKEGILFVTYPDG-----RPTGDAFVLFACEEYAQNALR---------------K-HKDLLG 93 (123)
T ss_dssp CCHHHHHHHHHTTSCCTTGGGGEEEEECTTS-----CEEEEEEECCSSHHHHHHHHT---------------T-TTEESS
T ss_pred CCHHHHHHHHHhhCCccCCcceEEEEECCCC-----CEeeEEEEEECCHHHHHHHHH---------------h-CCCeeC
Confidence 3467899999999986 57878764321 124678999999999999999 6 888888
Q ss_pred CeEEEEEEec
Q psy2134 84 GRMVRAELYD 93 (104)
Q Consensus 84 GR~V~a~~yd 93 (104)
||.|....-.
T Consensus 94 gR~i~V~~a~ 103 (123)
T 2dha_A 94 KRYIELFRST 103 (123)
T ss_dssp SCEECCEEEC
T ss_pred CeEEEEEECC
Confidence 8888765443
No 195
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.62 E-value=0.00012 Score=50.20 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=48.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.|..++.+..+.||.|..|+|..+ +.||+|.+.++|.+|+. |||..+.||.+
T Consensus 36 ~l~~~L~~~F~~~G~Vilvr~v~d------------~~fVtF~d~~sAl~AI~----------------ldG~~v~Gr~L 87 (95)
T 1ufw_A 36 DLRTELMQTLGSYGTIVLVRINQG------------QMLVTFADSHSALSVLD----------------VDGMKVKGRAV 87 (95)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEETT------------EEEEECSCSHHHHHHHH----------------GGGSEETTEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEecC------------cEEEEEcChHHHHHHHh----------------cCCeeeCCeEE
Confidence 356778888999999999988763 38999999999999987 78999999999
Q ss_pred EEEEe
Q psy2134 88 RAELY 92 (104)
Q Consensus 88 ~a~~y 92 (104)
+..+=
T Consensus 88 ~V~~k 92 (95)
T 1ufw_A 88 KISGP 92 (95)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 98753
No 196
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.61 E-value=0.00028 Score=44.86 Aligned_cols=57 Identities=26% Similarity=0.187 Sum_probs=42.4
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCce--eCCeE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRF--FAGRM 86 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~--F~GR~ 86 (104)
=++++++-+++||.|.+|.|...+ .|-.||+|++.++|.+ |+|.. +.|+.
T Consensus 24 te~~L~~~F~~~G~i~~v~i~~~s---------rGfaFV~F~~~~~A~~-------------------~~~~~~~~~g~~ 75 (89)
T 3d2w_A 24 TAEELQQFFCQYGEVVDVFIPKPF---------RAFAFVTFADDKVAQS-------------------LCGEDLIIKGIS 75 (89)
T ss_dssp CHHHHHHHHTTTSCEEEEECCSSC---------CSEEEEEESCHHHHHH-------------------HTTCEEEETTEE
T ss_pred CHHHHHHHHhccCCEEEEEEeeCC---------CCEEEEEECCHHHHHH-------------------HcCCCcccCCEE
Confidence 467899999999999999887642 2457999999999872 22433 35888
Q ss_pred EEEEEec
Q psy2134 87 VRAELYD 93 (104)
Q Consensus 87 V~a~~yd 93 (104)
|...+-.
T Consensus 76 v~v~~a~ 82 (89)
T 3d2w_A 76 VHISNAE 82 (89)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 8877643
No 197
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.59 E-value=0.00017 Score=48.21 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=38.9
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
.=++|+++-+++||.|.+|.|...+.+. ...+-.||+|.+.++|..|+.
T Consensus 15 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~ 63 (167)
T 2cjk_A 15 TTEDNLREYFGKYGTVTDLKIMKDPATG----RSRGFGFLSFEKPSSVDEVVK 63 (167)
T ss_dssp CCHHHHHHHHTTTCCEEEEECCCCTTTS----SCCSCEEEEESSTHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCEEEEEEEECCCCC----CccceEEEEEccHHHHHHHHh
Confidence 3467889899999999999987754321 123458999999999999999
No 198
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.00016 Score=47.54 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=48.6
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc-------
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR------- 80 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR------- 80 (104)
.-++|+++-+++||.|. +.+........ .....+-.||+|.+.++|.+|+++|| .|||+
T Consensus 20 ~te~~L~~~F~~~G~i~-~~~~~~~~~~~-~g~~~G~aFV~f~~~~~a~~Ai~~~~------------~~~G~~~~~~~~ 85 (114)
T 2dnl_A 20 IDEDEITASFRRFGPLV-VDWPHKAESKS-YFPPKGYAFLLFQEESSVQALIDACL------------EEDGKLYLCVSS 85 (114)
T ss_dssp CCHHHHHHHTTTTCCCC-EECTTSSSSCC-CSCTTSEEEECCSSHHHHHHHHHHSE------------EETTEEEEEECC
T ss_pred CCHHHHHHHHHhcCCEE-EEEeecCCCCC-CCCcccEEEEEECCHHHHHHHHHhhh------------hcCCcEEEeccC
Confidence 44678898999999999 66655433210 00123568999999999999999551 12555
Q ss_pred -eeCCeEEEEEEecc
Q psy2134 81 -FFAGRMVRAELYDQ 94 (104)
Q Consensus 81 -~F~GR~V~a~~yd~ 94 (104)
...++.+...=|..
T Consensus 86 ~~~~~~~~~v~p~~~ 100 (114)
T 2dnl_A 86 PTIKDKPVQIRPWNL 100 (114)
T ss_dssp SSSCSEEEEEECCCC
T ss_pred CCcCCCeeeccCCcc
Confidence 45667776664443
No 199
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.54 E-value=4.3e-05 Score=49.75 Aligned_cols=64 Identities=6% Similarity=0.019 Sum_probs=46.9
Q ss_pred ehhHHHHHhhhCCc---eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 9 IYNEKQSDDEAYGQ---VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 9 i~~ev~~Ec~kyG~---V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
-++|+++-++.||. |.+|.|...... ...+-.||+|.+.++|.+|+. | ||..+.||
T Consensus 24 te~~l~~~F~~~g~~~~v~~v~i~~~~~g-----~~~G~afV~F~~~~~a~~Al~-~---------------~~~~~~gr 82 (107)
T 2lmi_A 24 TMEDVLNFFSDCRIRNGENGIHFLLNRDG-----KRRGDALIEMESEQDVQKALE-K---------------HRMYMGQR 82 (107)
T ss_dssp CSHHHHHHTTTSCBTTTTTTEECCCCTTS-----TTCSEEEEEBSSHHHHHHHHT-T---------------TTCCSSSS
T ss_pred CHHHHHHHHHhcCCcCCcceEEEEECCCC-----CEeeEEEEEECCHHHHHHHHH-h---------------CcceeCCe
Confidence 35788888899888 889888765431 123568999999999999998 4 55556677
Q ss_pred EEEEEEec
Q psy2134 86 MVRAELYD 93 (104)
Q Consensus 86 ~V~a~~yd 93 (104)
.|....-.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 77665543
No 200
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.52 E-value=3.9e-05 Score=53.89 Aligned_cols=65 Identities=17% Similarity=0.021 Sum_probs=47.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.-++|+++-+++|| |++|.|...+.. .-.+-.||+|++.++|.+|+. |||..+.||.|
T Consensus 58 ~te~dL~~~F~~~G-i~~v~i~~d~~g-----~srGfaFV~F~~~e~A~~Al~----------------~~g~~l~gR~i 115 (139)
T 2hgn_A 58 ATENDIYNFFSPLN-PVRVHIEIGPDG-----RVTGEADVEFATHEEAVAAMS----------------KDRANMQHRYI 115 (139)
T ss_dssp CCHHHHHHHHCSCC-CSEEECCCSSSS-----CSSCCCEEECSHHHHHHHHTT----------------CCSCSSSSCCC
T ss_pred CCHHHHHHHHHhcC-CeEEEEEECCCC-----CCceEEEEEeCCHHHHHHHHh----------------hCCCEECCEEE
Confidence 45789999999999 668888765431 123457999999999999985 35666667776
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
....-..
T Consensus 116 ~V~~a~~ 122 (139)
T 2hgn_A 116 ELFLNST 122 (139)
T ss_dssp CCEECCC
T ss_pred EEEECCC
Confidence 6654443
No 201
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00075 Score=49.01 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=50.3
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCC----HHH----HHHHHHhhccchhhhhhhhhhhhcC
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSK----MQE----AEYARDALNGRFFAEAEYARDALNG 79 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~----~~~----A~~A~~~~~~r~f~~~~~~~~~LnG 79 (104)
+=++++++=.+.||.|.++.+..++.+. .-.|--||+|.+ +++ |.+|+. +-.|||
T Consensus 18 tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg----~slGfgfVef~d~~g~~d~a~kAA~kAi~-------------~~~lng 80 (136)
T 2j8a_A 18 IQDISIKNYFKKYGEISHFEAFNDPNSA----LPLHVYLIKYASSDGKINDAAKAAFSAVR-------------KHESSG 80 (136)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEEECTTTC----CEEEEEEEECC------CCHHHHHHHHHH-------------HTTTTC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC----ceeeEEEEEECCCCCCcchHHHHHHHHHH-------------HhhhcC
Confidence 3467788889999999999999876642 235668999997 544 344433 116899
Q ss_pred ceeCCeEEEEEEecc
Q psy2134 80 RFFAGRMVRAELYDQ 94 (104)
Q Consensus 80 R~F~GR~V~a~~yd~ 94 (104)
..++||.|++.+=+.
T Consensus 81 ~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 81 CFIMGFKFEVILNKH 95 (136)
T ss_dssp EEETTEEEEEEECCT
T ss_pred CeecCcEEEEEECcc
Confidence 999999999986443
No 202
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.35 E-value=0.00079 Score=45.08 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=45.4
Q ss_pred eehhHHHHHhhhC----C-------ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhh
Q psy2134 8 VIYNEKQSDDEAY----G-------QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDA 76 (104)
Q Consensus 8 ~i~~ev~~Ec~ky----G-------~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~ 76 (104)
.=++|+++-+++| | .|.++.+...+ +-.||+|.+.++|.+|+.
T Consensus 16 ~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~----------g~afV~f~~~~~A~~A~~---------------- 69 (172)
T 2g4b_A 16 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----------NFAFLEFRSVDETTQAMA---------------- 69 (172)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT----------TEEEEEESSHHHHHHHGG----------------
T ss_pred cCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC----------CEEEEEeCCHHHHHHHHH----------------
Confidence 3467888888998 7 78887776532 358999999999999984
Q ss_pred hcCceeCCeEEEEEEe
Q psy2134 77 LNGRFFAGRMVRAELY 92 (104)
Q Consensus 77 LnGR~F~GR~V~a~~y 92 (104)
|||..+.|+.+...+-
T Consensus 70 ~~~~~~~g~~i~v~~~ 85 (172)
T 2g4b_A 70 FDGIIFQGQSLKIRRP 85 (172)
T ss_dssp GTTCEETTEECEEECC
T ss_pred hCCcEecCceeeecCC
Confidence 5677778888887753
No 203
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.35 E-value=3e-05 Score=49.33 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=44.7
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=.+|+++-+++||.|.. .+...... ....+-.||+|.+.++|.+|+. | ||..+.|+.|
T Consensus 29 ~t~~~l~~~F~~~G~v~~-~~~~~~~~----g~~~g~afV~f~~~~~a~~A~~-l---------------~g~~~~g~~l 87 (101)
T 1fj7_A 29 KSVAELKVAISELFAKND-LAVVDVRT----GTNRKFGYVDFESAEDLEKALE-L---------------TGLKVFGNEI 87 (101)
T ss_dssp SCHHHHHHHHHHHHHHHT-CCCCEEEE----ETTTTEEEEEESSHHHHHHHHH-G---------------GGCCBTTBCC
T ss_pred CCHHHHHHHHHHhCCcce-EEEecCCC----CCcCcEEEEEECCHHHHHHHHh-c---------------CCcEECCcEE
Confidence 346788888999999877 23222110 1123468999999999999997 4 4555678888
Q ss_pred EEEEec
Q psy2134 88 RAELYD 93 (104)
Q Consensus 88 ~a~~yd 93 (104)
.+.+-.
T Consensus 88 ~V~~a~ 93 (101)
T 1fj7_A 88 KLEKPK 93 (101)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 877653
No 204
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.32 E-value=0.0002 Score=49.60 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=47.9
Q ss_pred eehhHHHHHhhhCCcee--EEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134 8 VIYNEKQSDDEAYGQVE--KVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR 85 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~--kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR 85 (104)
.-++|+++-++.| .|+ .|.|...+.. ...+-.||+|++.++|.+|+. . +|..+.||
T Consensus 54 ~te~dL~~~F~~~-~i~~~~v~i~~d~~G-----rsrGfaFV~F~~~e~A~~Al~---------------~-~~~~l~gR 111 (126)
T 2hgm_A 54 CTKEEIVQFFSGL-EIVPNGITLPVDPEG-----KITGEAFVQFASQELAEKALG---------------K-HKERIGHR 111 (126)
T ss_dssp CCHHHHHHHTTTS-CEEEEEEECCCCSSS-----SSCSEEEEEESSTTHHHHHHT---------------T-TTCCBTTB
T ss_pred CCHHHHHHHHhcC-CceeeEEEEEECCCC-----CCceEEEEEECCHHHHHHHHH---------------H-CCCEECCE
Confidence 4467899899999 455 7888765431 124568999999999999999 5 55778888
Q ss_pred EEEEEEecc
Q psy2134 86 MVRAELYDQ 94 (104)
Q Consensus 86 ~V~a~~yd~ 94 (104)
.|....-..
T Consensus 112 ~I~V~~a~~ 120 (126)
T 2hgm_A 112 YIEVFKSSQ 120 (126)
T ss_dssp CCCCEEECH
T ss_pred EEEEEECCH
Confidence 877655443
No 205
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.30 E-value=0.00093 Score=45.70 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=45.4
Q ss_pred ehhHHHHHhhhC----C-------ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh
Q psy2134 9 IYNEKQSDDEAY----G-------QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL 77 (104)
Q Consensus 9 i~~ev~~Ec~ky----G-------~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L 77 (104)
=++|+++-+++| | .|.++.+...+ +-.||+|.+.++|.+|+. |
T Consensus 17 te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~----------g~afV~F~~~~~A~~Al~----------------l 70 (198)
T 2yh0_A 17 TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----------NFAFLEFRSVDETTQAMA----------------F 70 (198)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTT----------TEEEEEESCSHHHHHHGG----------------G
T ss_pred CHHHHHHHHHHHHhhcccccCCCCceEEeEecCCC----------CEEEEEeCCHHHHHHHHH----------------h
Confidence 467888889999 5 67776665432 358999999999999984 5
Q ss_pred cCceeCCeEEEEEEec
Q psy2134 78 NGRFFAGRMVRAELYD 93 (104)
Q Consensus 78 nGR~F~GR~V~a~~yd 93 (104)
||..+.|+.|...+-.
T Consensus 71 ~g~~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 71 DGIIFQGQSLKIRRPH 86 (198)
T ss_dssp TTEEETTEEEEEECCC
T ss_pred cCCEEcCceEEEeCCC
Confidence 6777788999888643
No 206
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.00032 Score=43.61 Aligned_cols=61 Identities=21% Similarity=0.167 Sum_probs=44.1
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV 87 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V 87 (104)
.=++|+++-+++||.|.+|.|...+. +-.||+|.+.++|++|.. . +-.+.|+.|
T Consensus 17 ~te~~l~~~F~~~G~i~~v~i~~~~~---------g~afV~f~~~~~a~~~~~---------------~--~~~~~g~~l 70 (88)
T 1wf0_A 17 MTEDELREFFSQYGDVMDVFIPKPFR---------AFAFVTFADDQIAQSLCG---------------E--DLIIKGISV 70 (88)
T ss_dssp SCHHHHHHHSTTTSCCCEEECCSSCC---------SCCEEECSCHHHHHHTTT---------------C--EEEETTEEE
T ss_pred CCHHHHHHHHHHcCCeeEEEEecCCC---------CEEEEEECCHHHHHHHhc---------------C--CceeCCEEE
Confidence 34678898999999999998876422 347999999999964322 1 223488888
Q ss_pred EEEEecc
Q psy2134 88 RAELYDQ 94 (104)
Q Consensus 88 ~a~~yd~ 94 (104)
...+-..
T Consensus 71 ~v~~a~~ 77 (88)
T 1wf0_A 71 HISNAEP 77 (88)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 8876544
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.95 E-value=0.002 Score=45.06 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=47.4
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCC-HHHHHHHHHhhccchhhhhhhhhhhh--cCceeCC
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSK-MQEAEYARDALNGRFFAEAEYARDAL--NGRFFAG 84 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~-~~~A~~A~~~~~~r~f~~~~~~~~~L--nGR~F~G 84 (104)
.-.+++++-+++||.|..|.+..... .-||+|.+ ..+|..|+. +| +|..+.|
T Consensus 31 ~sredLke~F~~~G~V~~Vd~~~g~~----------tgfVrf~~~~~~A~~av~---------------~ln~~~~~i~g 85 (121)
T 1owx_A 31 TCREDLHILFSNHGEIKWIDFVRGAK----------EGIILFKEKAKEALGKAK---------------DANNGNLQLRN 85 (121)
T ss_dssp CCHHHHHHHTCSSCCEEEEECCTTCS----------EEEEEESSCHHHHHHHHH---------------HTTTSCBCTTS
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCC----------EEEEEECCChHHHHHHHH---------------HhhcCCcEEeC
Confidence 45789999999999999877755322 27999999 799999999 66 3667777
Q ss_pred eEEEEEEec
Q psy2134 85 RMVRAELYD 93 (104)
Q Consensus 85 R~V~a~~yd 93 (104)
..++.+...
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 777776543
No 208
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.92 E-value=0.00027 Score=47.83 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=44.4
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR 88 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~ 88 (104)
-++|+++-.++||.|..+.|..... ....+..||+|.+.++|.+|+. |||..+.|+.+.
T Consensus 26 t~~~l~~~f~~~g~~~~~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~----------------l~g~~~~g~~l~ 84 (175)
T 1fje_B 26 SVAELKVAISELFAKNDLAVVDVRT-----GTNRKFGYVDFESAEDLEKALE----------------LTGLKVFGNEIK 84 (175)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCEEEE-----ETTTTEEEEEESSHHHHHHHHH----------------GGGEEETTEEEE
T ss_pred CHHHHHHHHHHhCCcceEEEEECCC-----CccccEEEEEECCHHHHHHHHh----------------cCCCEeCCeEEE
Confidence 3567777778888766522222111 1123468999999999999996 567777889999
Q ss_pred EEEecc
Q psy2134 89 AELYDQ 94 (104)
Q Consensus 89 a~~yd~ 94 (104)
..+...
T Consensus 85 v~~~~~ 90 (175)
T 1fje_B 85 LEKPKG 90 (175)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 887653
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.01 Score=42.30 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=41.4
Q ss_pred CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134 21 GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY 92 (104)
Q Consensus 21 G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y 92 (104)
|.+.||++..++++ ..|+|.+...|-+|.- +|||=.|+||.+++.-.
T Consensus 51 g~i~KI~L~pDH~G----------Aivef~d~~~AgKasL---------------aL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 51 KDIRKILLVSDFNG----------AIIIFRDSKFAAKMLM---------------ILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTCSEEEEETTTTE----------EEEECSCHHHHHHHHH---------------HHSSEEETTEEEEEECH
T ss_pred cceeEEEEecCCCc----------eEEEEccchhhHHHHh---------------hcCCeeecCeEEEecCH
Confidence 99999888777662 6899999999999999 99999999999998643
No 210
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.04 E-value=0.024 Score=39.96 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=43.6
Q ss_pred ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC-eEE
Q psy2134 9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG-RMV 87 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G-R~V 87 (104)
..+.|-.+.++||.|++...+.. .--|.|+|++..+|++|+. .||+.++| -||
T Consensus 36 ~~~~VL~~F~~~G~Iv~~~~~~~----------~NWihI~Y~s~~~A~rAL~----------------kNG~ii~g~~mI 89 (119)
T 1wwh_A 36 SASYILLQFAQYGNILKHVMSNT----------GNWMHIRYQSKLQARKALS----------------KDGRIFGESIMI 89 (119)
T ss_dssp GHHHHHHHHHTTSCEEEEEECSS----------SSEEEEEESSHHHHHHHHT----------------TTTCEETTTEEC
T ss_pred HHHHHHHHHHhhCcEEEeccCCC----------CCeEEEEeCCHHHHHHHHH----------------hCCeEecCCEEE
Confidence 35677889999999998665211 1258999999999999998 48888875 566
Q ss_pred EEEEe
Q psy2134 88 RAELY 92 (104)
Q Consensus 88 ~a~~y 92 (104)
-+.-+
T Consensus 90 GV~p~ 94 (119)
T 1wwh_A 90 GVKPC 94 (119)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 55544
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.49 E-value=0.045 Score=37.92 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=46.9
Q ss_pred hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134 10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA 89 (104)
Q Consensus 10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a 89 (104)
+..+++=...|+............ +|-|.|+++++|.+|+. .|+|-.|.|+.+++
T Consensus 24 k~~~e~Lf~~~~~~~tF~~lkSFR----------Rirv~F~~~~~A~~AR~---------------~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 24 RAKFESLFRTYDKDTTFQYFKSFK----------RVRINFSNPLSAADARL---------------RLHKTEFLGKEMKL 78 (104)
T ss_dssp HHHHHHHHHTTCSSCEEEEETTTT----------EEEEECSSTTHHHHHHH---------------TSTTSEETTEECEE
T ss_pred HHHHHHHHHhhCcCcceeecCcce----------EEEEEeCChHHHHHHHH---------------HhccceecCceeEE
Confidence 344444456899998865555433 89999999999999999 99999999999997
Q ss_pred EEec
Q psy2134 90 ELYD 93 (104)
Q Consensus 90 ~~yd 93 (104)
.|=.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 7643
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.59 E-value=0.29 Score=35.15 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=48.1
Q ss_pred ehhHHHHHhhhCCceeEE-EEecCCC---------CCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc
Q psy2134 9 IYNEKQSDDEAYGQVEKV-VIYNEKQ---------SDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN 78 (104)
Q Consensus 9 i~~ev~~Ec~kyG~V~kV-~I~~~~~---------~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln 78 (104)
+..-|-.+.++||.|.+- .+..+.. ..-+...+--=|.|+|++..+|.+|++ -|
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~----------------~N 82 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL----------------EN 82 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT----------------TT
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH----------------hC
Confidence 445677789999998661 1111000 000000133458899999999999998 68
Q ss_pred CceeCCeEEEEEEeccc
Q psy2134 79 GRFFAGRMVRAELYDQS 95 (104)
Q Consensus 79 GR~F~GR~V~a~~yd~~ 95 (104)
|+.|+|-||-+.-|+.+
T Consensus 83 G~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp TCEETTEECEEEECCHH
T ss_pred CeEeCcEEEEEEECCHH
Confidence 99999999999998764
No 213
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=85.04 E-value=0.36 Score=32.29 Aligned_cols=35 Identities=11% Similarity=-0.136 Sum_probs=29.4
Q ss_pred eEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh-cCceeCCeEEEEEEe
Q psy2134 42 IVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL-NGRFFAGRMVRAELY 92 (104)
Q Consensus 42 ~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L-nGR~F~GR~V~a~~y 92 (104)
.|..+|+|.+.++|++|+. .| ||..+.| .+...+-
T Consensus 13 ~G~~~ve~~~~~~A~~a~~---------------~~~ng~~~~G-~~~~~~a 48 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFK---------------QYANDNGVDG-EWTYDDA 48 (150)
T ss_dssp CEEEEEECSSHHHHTTTHH---------------HHHHHHTCCC-EEEEETT
T ss_pred cccceeeecCHHHHHHHHH---------------HHhcCCCCCC-ceecccc
Confidence 4677999999999999999 88 8888888 7777643
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=70.49 E-value=3.4 Score=27.40 Aligned_cols=23 Identities=9% Similarity=-0.133 Sum_probs=19.8
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcc
Q psy2134 42 IVKIFVSFSKMQEAEYARDALNG 64 (104)
Q Consensus 42 ~vkifV~F~~~~~A~~A~~~~~~ 64 (104)
.|.-||+|.+.++|++|+..+|+
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcc
Confidence 57789999999999999995554
No 215
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=66.24 E-value=3.8 Score=34.20 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=31.0
Q ss_pred eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
.=+.|+.+=|+.||+|.++..|..+. .-+-|+|++.+++..++.
T Consensus 64 ~~~~~l~~y~~~~g~i~~~~~~~~~g---------~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 64 ISENKFLKYLSQFGPINNHFFYESFG---------LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp ---CHHHHHHGGGSCCCCEEEECSSS---------EEEEEECC---CCHHHHS
T ss_pred CCHHHHHHHHHhcCCcceEEEEccCC---------eEEEEEeCCHHHHHHHHh
Confidence 34678888899999999988886432 578899999998887765
No 216
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=40.47 E-value=44 Score=22.69 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=28.7
Q ss_pred CCceeEEEEecCCCCCcccccceEEEEEE-eCCHHHHHHHHHhhccchhhhhhhhhhhhcCc
Q psy2134 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVS-FSKMQEAEYARDALNGRFFAEAEYARDALNGR 80 (104)
Q Consensus 20 yG~V~kV~I~~~~~~~~~~~~~~vkifV~-F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR 80 (104)
.=+|.+|.+-.+-. ..+|||+ |-+.++...++.+||. -+.+.|..|..|
T Consensus 43 ~vtVt~V~vS~Dl~--------~AkVyvs~~~~~~~~~~~~~~L~~----a~g~iR~~l~~~ 92 (129)
T 2e7g_A 43 NVELSKVSLTPDFS--------ACRAYWKTTLSAEQNAHMEAVLQR----SAAHMRHLLMSQ 92 (129)
T ss_dssp TCCEEEEEECTTSC--------CEEEEECCCSCHHHHHHHHHHHHH----THHHHHHHHHTC
T ss_pred eeEEEEEEECCCCc--------EEEEEEEecCChhhHHHHHHHHHH----hHHHHHHHHHhh
Confidence 45788887765433 5689999 7665554555554542 233444455444
No 217
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.61 E-value=72 Score=20.30 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=23.8
Q ss_pred eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 23 VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 23 V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
|..|.++...+ |-|||++...++...+++
T Consensus 40 i~~v~vP~~fP---------GYVfVe~~~~~~~~~~I~ 68 (92)
T 3lpe_A 40 VYSILASESLK---------GYVLVEAETKGDVEELIK 68 (92)
T ss_dssp EEEEEECTTST---------TEEEEEESSHHHHHHHHT
T ss_pred EEEEEEecccC---------CEEEEEEecchhHHHHHH
Confidence 77777876544 579999999999998888
No 218
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=35.63 E-value=41 Score=21.93 Aligned_cols=29 Identities=17% Similarity=0.497 Sum_probs=22.0
Q ss_pred ccceEEEEEEeCCHHHHHHHHHhhccchh
Q psy2134 39 SEVIVKIFVSFSKMQEAEYARDALNGRFF 67 (104)
Q Consensus 39 ~~~~vkifV~F~~~~~A~~A~~~~~~r~f 67 (104)
+..-.+.||.|.+.++...-.+.++|.-|
T Consensus 42 ~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 42 PHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp TCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 45668999999999999988884444433
No 219
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=32.65 E-value=76 Score=21.56 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=25.9
Q ss_pred HhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 16 DDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 16 Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
++..-. |.+|.++...+ |-|||++...++.+.+++
T Consensus 27 ~~~~l~-i~~v~vp~~fP---------GYVfVe~~~~~~~~~~v~ 61 (152)
T 3p8b_B 27 RTYNLP-IYAILAPSRVK---------GYIFVEAPNKGVVDEAIR 61 (152)
T ss_dssp HHHTCC-CCEEEECTTCC---------SEEEEEESSHHHHHHHHT
T ss_pred hhcCCc-EEEEEeecCCC---------cEEEEEEEchHHHHHHHh
Confidence 343333 77777775544 579999999999999998
No 220
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=31.57 E-value=81 Score=20.62 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=22.0
Q ss_pred CceeEEEEecCCCCCcccccceEEEEEEeCC-HHHHHHHHHhhc
Q psy2134 21 GQVEKVVIYNEKQSDDEASEVIVKIFVSFSK-MQEAEYARDALN 63 (104)
Q Consensus 21 G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~-~~~A~~A~~~~~ 63 (104)
=.|.+|.+-.+- ...+|||++-. .++...++.+||
T Consensus 36 vtVt~V~vs~Dl--------~~AkVyvs~~g~~~~~~~~~~~L~ 71 (106)
T 2kzf_A 36 VTFSRVELSKDK--------RYADVYVSFLGTPEERKETVEILN 71 (106)
T ss_dssp CCEEEEEECTTS--------CEEEEEECCSSCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCC--------CEEEEEEEeCCChhhHHHHHHHHH
Confidence 467777775433 35789998763 555555555554
No 221
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=31.26 E-value=1.1e+02 Score=20.74 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=20.5
Q ss_pred ceeEEEEecCCCCCcccccceEEEEEEeCC---HHHHHHHHHhhc
Q psy2134 22 QVEKVVIYNEKQSDDEASEVIVKIFVSFSK---MQEAEYARDALN 63 (104)
Q Consensus 22 ~V~kV~I~~~~~~~~~~~~~~vkifV~F~~---~~~A~~A~~~~~ 63 (104)
+|.+|.+-.+- ...+|||++-. .++...++.+||
T Consensus 36 tVt~V~vS~Dl--------~~AkVyvs~~g~~~~~~~~~~~~~L~ 72 (128)
T 1jos_A 36 TVSDVEVSSDL--------SYAKIFVTFLFDHDEMAIEQGMKGLE 72 (128)
T ss_dssp EEEEEEECTTS--------CEEEEEEEESCCSCHHHHHHHHHHHH
T ss_pred EEeEEEECCCC--------CEEEEEEEeCCCCchhhHHHHHHHHH
Confidence 55565554332 35799999875 555555555554
No 222
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=28.98 E-value=35 Score=25.60 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=36.7
Q ss_pred eehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134 4 VEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60 (104)
Q Consensus 4 verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~ 60 (104)
+||..=.++|++|-..|.+. ||..+ +...-.||++.+.++-...+.
T Consensus 61 iEri~~~~~I~~Ei~aYnpL----iP~~~-------~l~ATl~IE~~d~~er~~~L~ 106 (194)
T 3fjv_A 61 IEKIFDEDGIQAELDAYLPL----VPDGS-------NLKATLQIEYENETQRRAALA 106 (194)
T ss_dssp HHTCCSHHHHHHHHHHHGGG----CCCSS-------EEEEEEEECCSSHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHhccc----CCCCC-------cEEEEEEEEcCCHHHHHHHHH
Confidence 45555568999999999998 55432 356679999999999999999
No 223
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=28.80 E-value=89 Score=21.25 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=28.1
Q ss_pred hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhh
Q psy2134 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDAL 62 (104)
Q Consensus 11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~ 62 (104)
.||..=.+.||.|. |. +.+.. ..||.|.+++.|..|++++
T Consensus 30 ~DI~~lFs~fggv~-I~-WidDT----------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 30 SDLYQLFSAFGNIQ-IS-WIDDT----------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp HHHHHHHTTTCSCC-CE-EEETT----------EEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCEE-EE-EEcCC----------eEEEEecCHHHHHHHHHhc
Confidence 46666678898664 22 22211 3899999999999999965
No 224
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=21.41 E-value=71 Score=21.33 Aligned_cols=29 Identities=17% Similarity=0.467 Sum_probs=21.2
Q ss_pred ccceEEEEEEeCCHHHHHHHHHhhccchh
Q psy2134 39 SEVIVKIFVSFSKMQEAEYARDALNGRFF 67 (104)
Q Consensus 39 ~~~~vkifV~F~~~~~A~~A~~~~~~r~f 67 (104)
+..-.+.||.|.+.++...-.+..+|.-|
T Consensus 50 ~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 50 PHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred CCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 34556899999999999988883333333
Done!