Your job contains 1 sequence.
>psy2134
YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD
ALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2134
(104 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 180 7.3e-13 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 163 3.6e-11 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 163 3.8e-11 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 163 4.0e-11 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 163 4.0e-11 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 162 4.7e-11 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 159 9.8e-11 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 159 1.1e-10 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 159 1.1e-10 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 154 2.1e-10 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 154 3.5e-10 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 151 6.9e-10 1
FB|FBgn0086683 - symbol:Spf45 "Spf45" species:7227 "Droso... 86 7.1e-08 2
WB|WBGene00004389 - symbol:rnp-6 species:6239 "Caenorhabd... 113 1.4e-05 1
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 180 (68.4 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 45/99 (45%), Positives = 59/99 (59%)
Query: 9 IYNEKQSDDEAYGQVEKVVIYNEKQS---DDEASEVIVKIFVSFSKMQEAEYARDALNGR 65
+ E Q + +G V +V+I+NEKQ+ DD+ +E+IVKIFV FS G
Sbjct: 554 LQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSA------------G- 600
Query: 66 FFAEAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
AEA ++AL+GRFF GR V AELYDQ +FD D SG
Sbjct: 601 --AEAMRGKEALDGRFFGGRRVVAELYDQGIFDQGDLSG 637
Score = 114 (45.2 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 1 YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD 60
+G V +V+I+NEKQ+++E DD+ +E+IVKIFV FS EA ++
Sbjct: 565 FGTVSRVIIFNEKQTENE----------------DDDEAEIIVKIFVEFSAGAEAMRGKE 608
Query: 61 ALNGRFF 67
AL+GRFF
Sbjct: 609 ALDGRFF 615
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 163 (62.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 39/84 (46%), Positives = 51/84 (60%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 453 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA---------------SETHKAIQALNG 497
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
R+FAGR V AE+YDQ FD++D S
Sbjct: 498 RWFAGRKVVAEVYDQERFDNSDLS 521
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 163 (62.4 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 39/84 (46%), Positives = 51/84 (60%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 474 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 518
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
R+FAGR V AE+YDQ FD++D S
Sbjct: 519 RWFAGRKVVAEVYDQERFDNSDLS 542
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 163 (62.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 39/84 (46%), Positives = 51/84 (60%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 490 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 534
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
R+FAGR V AE+YDQ FD++D S
Sbjct: 535 RWFAGRKVVAEVYDQERFDNSDLS 558
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 163 (62.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 39/84 (46%), Positives = 51/84 (60%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 491 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 535
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
R+FAGR V AE+YDQ FD++D S
Sbjct: 536 RWFAGRKVVAEVYDQERFDNSDLS 559
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 162 (62.1 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 39/84 (46%), Positives = 51/84 (60%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 461 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVA---------------SETHKAIQALNG 505
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
R+FAGR V AE+YDQ FD++D S
Sbjct: 506 RWFAGRKVVAEVYDQERFDNSDLS 529
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 159 (61.0 bits), Expect = 9.8e-11, P = 9.8e-11
Identities = 39/84 (46%), Positives = 51/84 (60%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS E A +D LNG
Sbjct: 461 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKA--------------IQD-LNG 505
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
R+FAGR V AE+YDQ FD++D S
Sbjct: 506 RWFAGRKVVAEVYDQERFDNSDLS 529
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 38/84 (45%), Positives = 50/84 (59%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 495 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA---------------SETHKAIQALNG 539
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
R+F GR V AE+YDQ FD++D S
Sbjct: 540 RWFGGRKVVAEVYDQERFDNSDLS 563
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 38/84 (45%), Positives = 50/84 (59%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNG
Sbjct: 495 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA---------------SETHKAIQALNG 539
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
R+F GR V AE+YDQ FD++D S
Sbjct: 540 RWFGGRKVVAEVYDQERFDNSDLS 563
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 154 (59.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 38/81 (46%), Positives = 49/81 (60%)
Query: 23 VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF 82
V +V+IY EKQ ++E +E+IVKIFV FS +E A ALNGR+F
Sbjct: 340 VNRVIIYQEKQGEEEDAEIIVKIFVEFSVA---------------SETHKAIQALNGRWF 384
Query: 83 AGRMVRAELYDQSLFDHNDFS 103
AGR V AE+YDQ FD++D S
Sbjct: 385 AGRKVVAEVYDQERFDNSDLS 405
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 154 (59.3 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 39/84 (46%), Positives = 50/84 (59%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
+G V +V+IY EKQ ++E +EVIVKIFV FS E +N A ALN
Sbjct: 469 FGAVNRVIIYQEKQGEEEDAEVIVKIFVEFSAASE-------MNK--------AIQALNN 513
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
R+F GR V AE+YDQ FD++D S
Sbjct: 514 RWFGGRKVIAEVYDQERFDNSDLS 537
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 151 (58.2 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 38/84 (45%), Positives = 50/84 (59%)
Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
YG V +V+IY E+Q +++ +E+IVKIFV FS DA E A ALN
Sbjct: 447 YGAVNRVIIYQERQGEEDDAEIIVKIFVEFS---------DA------GEMNKAIQALNN 491
Query: 80 RFFAGRMVRAELYDQSLFDHNDFS 103
R+FAGR V AELYDQ F+ +D +
Sbjct: 492 RWFAGRKVVAELYDQDRFNSSDLT 515
>FB|FBgn0086683 [details] [associations]
symbol:Spf45 "Spf45" species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IGI] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174 SMART:SM00360
SMART:SM00443 EMBL:AE014134 GO:GO:0000166 GO:GO:0006281
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
HSSP:Q01081 GO:GO:0000381 KO:K12840 InterPro:IPR016967
PIRSF:PIRSF031066 GeneTree:ENSGT00390000008837 UniGene:Dm.7003
GeneID:3355114 KEGG:dme:Dmel_CG17540 CTD:3355114
FlyBase:FBgn0086683 GenomeRNAi:3355114 NextBio:850653 EMBL:DQ295864
EMBL:BT044104 RefSeq:NP_001036426.1 SMR:Q7PL83 IntAct:Q7PL83
MINT:MINT-964924 STRING:Q7PL83 EnsemblMetazoa:FBtr0111239
UCSC:CG17540-RA InParanoid:Q7PL83 OMA:RAGFYNQ Uniprot:Q7PL83
Length = 403
Score = 86 (35.3 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 2 GQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDA 61
G V++ + K + YG+V V+I+ +S E VKIFV F +++ A A
Sbjct: 320 GDVDEELEPEVKDECNTKYGEVNSVIIH---ESFGTVPEDAVKIFVEFRRIESAIKAVVD 376
Query: 62 LNGRFF 67
LNGRFF
Sbjct: 377 LNGRFF 382
Score = 66 (28.3 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 77 LNGRFFAGRMVRAELYDQSLF 97
LNGRFF GR VRA Y+ F
Sbjct: 377 LNGRFFGGRQVRAGFYNYDKF 397
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 38 ASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLF 97
AS +VKIFV +S D++ + + A+ AL+GRFF G V+AE YDQ LF
Sbjct: 698 ASSGLVKIFVKYS---------DSM------QVDRAKAALDGRFFGGNTVKAEAYDQILF 742
Query: 98 DHNDFSG 104
DH D++G
Sbjct: 743 DHADYTG 749
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.364 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 104 104 0.00091 102 3 11 22 0.43 30
29 0.50 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 414 (44 KB)
Total size of DFA: 83 KB (2067 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.58u 0.10s 11.68t Elapsed: 00:00:02
Total cpu time: 11.58u 0.11s 11.69t Elapsed: 00:00:02
Start: Thu Aug 15 11:22:18 2013 End: Thu Aug 15 11:22:20 2013