RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2134
(104 letters)
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 42.7 bits (100), Expect = 3e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 69 EAEYARDALNGRFFAGRMVRAELYDQSLFDHNDF 102
+ + A L GR FA R+V + D + DF
Sbjct: 70 DCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 103
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 32.2 bits (73), Expect = 0.003
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 28 IYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFF------AEAEYARDALNGRF 81
++ +E E + F ++++ +G EA+Y L+GR+
Sbjct: 22 FEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRW 81
Query: 82 FAGRMVRAELYD 93
F GR + A+ +D
Sbjct: 82 FGGRQITAQAWD 93
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.5 bits (71), Expect = 0.005
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALN-GRFFAE 69
N QS D V V + E EV ++ + +++E + +
Sbjct: 15 NSSQSADGLRSAVSDVEMQEHYDEFFE--EVFTEMEEKYGEVEEMNVCDNLGDHLVGNVY 72
Query: 70 AEY--------ARDALNGRFFAGRMVRAELY 92
++ A LN R+F G+ + AEL
Sbjct: 73 VKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 27.0 bits (59), Expect = 0.19
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 68 AEAEYARDALNGRFFAGRMVR 88
+ A+ A AL +M +
Sbjct: 51 SAAQKAVTALKASGVQAQMAK 71
Score = 22.4 bits (47), Expect = 7.2
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 46 FVSFSKMQEAEYARDALNGRFF 67
FV F A+ A AL
Sbjct: 44 FVDFDSPSAAQKAVTALKASGV 65
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 26.1 bits (57), Expect = 0.46
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 40 EVIVKIFVSFSKMQEAEYARDALNGRF----FAEAEYARDALNGRFFAGRMVR 88
+++ + F F ++ E + A +A ++NG G +V+
Sbjct: 33 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 85
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 25.8 bits (56), Expect = 0.53
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
+AE A + LNG + ++
Sbjct: 55 KDAEKAINTLNGLRLQTKTIKVSY 78
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 25.6 bits (56), Expect = 0.66
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
A A +GR AG+++ L
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINL 84
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 25.7 bits (56), Expect = 0.70
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 40 EVIVKIFVSFSKMQEAEYARDALNGRF----FAEAEYARDALNGRFFAGRMVRAEL 91
E + K+F + K E +D G AE A+ L+ G+ +R
Sbjct: 23 EEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 78
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 25.5 bits (55), Expect = 0.71
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 68 AEAEYARDALNGRFFAGRMVRAE 90
+A A++ALNG G+ ++ +
Sbjct: 60 KQALAAKEALNGAEIMGQTIQVD 82
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 25.8 bits (56), Expect = 0.72
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
A A ++G+ F GRM+
Sbjct: 61 EHAVKAYAEVDGQVFQGRMLHVLP 84
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 25.3 bits (55), Expect = 0.76
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 46 FVSFSKMQEAEYARDALNGRFF 67
FV ++K +EA+ A ALN
Sbjct: 52 FVRYNKREEAQEAISALNNVIP 73
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 25.4 bits (55), Expect = 0.78
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 68 AEAEYARDALNGRFFAGRMVR 88
+A+ A++ NG GR +R
Sbjct: 62 DDAKEAKERANGMELDGRRIR 82
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.5 bits (55), Expect = 0.82
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
A A LNGR F+GR +R +
Sbjct: 61 ETALSAMRNLNGREFSGRALRVDN 84
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.4 bits (55), Expect = 0.82
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
+A A ++G + ++ E
Sbjct: 61 EDAARAIAGVSGFGYDHLILNVEW 84
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.4 bits (55), Expect = 0.92
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
A+ A ++NG + ++ +L
Sbjct: 71 VSAQAAIQSMNGFQIGMKRLKVQL 94
Score = 23.1 bits (49), Expect = 7.1
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 45 IFVSFSKMQEAEYARDALNGRFF 67
FVS+ A+ A ++NG
Sbjct: 63 GFVSYDNPVSAQAAIQSMNGFQI 85
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 25.0 bits (54), Expect = 0.95
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 40 EVIVKIFVSFSKMQEAEYARDALNGRFF----------AEAEYARDALNGRFFAGRMVRA 89
+ +F + + RD G + +++ A LNG + ++
Sbjct: 17 RELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 76
Query: 90 EL 91
Sbjct: 77 SY 78
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 25.4 bits (55), Expect = 1.0
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 46 FVSFSKMQEAEYARDALNGRFF 67
+V + + +A+ A D L+G
Sbjct: 50 YVVYEDIFDAKNACDHLSGFNV 71
Score = 25.4 bits (55), Expect = 1.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 68 AEAEYARDALNGRFFAGRMVRAELYDQ 94
+A+ A D L+G R + Y+
Sbjct: 57 FDAKNACDHLSGFNVCNRYLVVLYYNA 83
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 25.6 bits (55), Expect = 1.1
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 67 FAEAEYARDALNGRFFAGRMVRAEL 91
+ A+ A LNG + ++ L
Sbjct: 94 GSSAQQAIAGLNGFNILNKRLKVAL 118
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 25.0 bits (54), Expect = 1.1
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 40 EVIVKIFVSFSKMQEAEYARDALNGRFF--------AEAEYARDALNGRFFAGRMVRAEL 91
+ ++F F K+ + E + + F A+A+ AR+ L+G GR +
Sbjct: 26 PDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 85
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 24.9 bits (54), Expect = 1.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
A+A A NG GR + +L
Sbjct: 52 ADALKAMKQYNGVPLDGRPMNIQL 75
Score = 23.7 bits (51), Expect = 2.8
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 45 IFVSFSKMQEAEYARDALNGRFF 67
V F + +A A NG
Sbjct: 44 ADVHFERKADALKAMKQYNGVPL 66
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 25.0 bits (54), Expect = 1.3
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 30 NEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFF-------AEAEYARDALNGRFF 82
NEK DE + + IF F ++ + +R + A A ++ G F
Sbjct: 12 NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF 71
Query: 83 AGRMVRAEL 91
+ +R +
Sbjct: 72 YDKPMRIQY 80
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 25.1 bits (54), Expect = 1.4
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 46 FVSFSKMQEAEYARDALNGR 65
F + +E++ A LNG+
Sbjct: 60 FARYRTTEESKRAYVTLNGK 79
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 24.6 bits (53), Expect = 1.4
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
+A A D +N GR +R L
Sbjct: 58 EDAAAAIDNMNESELFGRTIRVNL 81
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 24.6 bits (53), Expect = 1.5
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 65 RFFAEAEYARDALNGRFFAGRMVRAEL 91
+ A+AE + G GR V
Sbjct: 61 KSEADAEKNLEEKQGAEIDGRSVSLYY 87
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 24.6 bits (53), Expect = 1.5
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 12/83 (14%)
Query: 16 DDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRF-------FA 68
D++ V+ + + N S E I F+ ++ R +
Sbjct: 1 DEDTMSSVKILYVRNLMLSTSEEM-----IEKEFNNIKPGAVERVKKIRDYAFVHFSNRE 55
Query: 69 EAEYARDALNGRFFAGRMVRAEL 91
+A A ALNG+ G + L
Sbjct: 56 DAVEAMKALNGKVLDGSPIEVTL 78
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 24.7 bits (53), Expect = 1.6
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 69 EAEYARDALNGRFFAGRMVRAEL 91
+A+ A + F G+ + +L
Sbjct: 52 QAQNAIQMFHQYSFRGKDLIVQL 74
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 24.5 bits (53), Expect = 1.7
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 18 EAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFF 67
G + + + + + + +V+F + +AE A D +N
Sbjct: 22 SPAGPILSIRVCRDMITRRS----LGYAYVNFQQPADAERALDTMNFDVI 67
Score = 24.1 bits (52), Expect = 2.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 68 AEAEYARDALNGRFFAGRMVR 88
A+AE A D +N G+ VR
Sbjct: 53 ADAERALDTMNFDVIKGKPVR 73
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 24.2 bits (52), Expect = 2.0
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
AE A + +NG R V
Sbjct: 59 EAAERAIEKMNGMLLNDRKVFVGR 82
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 24.2 bits (52), Expect = 2.2
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
+A+ A L G G + +
Sbjct: 54 EQAQKALKQLQGHTVDGHKLEVRI 77
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 24.2 bits (52), Expect = 2.6
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
+A A A+NGR G+ V+
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNW 82
Score = 22.7 bits (48), Expect = 9.0
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 15 SDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFF 67
++ ++ + E + FV F + ++A A A+NGR
Sbjct: 21 TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI 73
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 23.8 bits (51), Expect = 2.6
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 46 FVSFSKMQEAEYARDALNGRFF 67
F + + + A LNG
Sbjct: 47 FCEYVDINVTDQAIAGLNGMQL 68
Score = 23.4 bits (50), Expect = 4.4
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
+ A LNG + + +
Sbjct: 54 NVTDQAIAGLNGMQLGDKKLLVQR 77
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 24.0 bits (51), Expect = 3.0
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
A+ A + +G+ F G ++ L
Sbjct: 69 PTAKAAVEWFDGKDFQGSKLKVSL 92
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 23.8 bits (51), Expect = 3.0
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 68 AEAEYARDALNGRFFAGRMVR 88
+A+YA ++ G+ +R
Sbjct: 62 EDADYAIKIMDMIKLYGKPIR 82
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 24.4 bits (53), Expect = 3.3
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 22 QVEKVVIYNEKQSDDEASEVIVKIF 46
+ V+I + + ++AS+++ K
Sbjct: 116 KEAAVIICIKNKEFEKASKILKKHM 140
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 23.6 bits (50), Expect = 4.1
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 68 AEAEYARDALNGRFFAGRMVR 88
+ E NG+F
Sbjct: 70 EKCEAVIGHFNGKFIKTPPGV 90
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 23.4 bits (50), Expect = 4.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
A+AE A +NG R++R +
Sbjct: 60 ADAENAMRYINGTRLDDRIIRTDW 83
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 23.4 bits (50), Expect = 4.9
Identities = 4/20 (20%), Positives = 13/20 (65%)
Query: 46 FVSFSKMQEAEYARDALNGR 65
+ ++ A++A+ +L+G+
Sbjct: 49 LLQYADPVSAQHAKLSLDGQ 68
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 204
Score = 23.6 bits (51), Expect = 5.1
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 22 QVEKVVIYNEKQSDDEASEVIVKIF 46
+++ + + E + EA EV +IF
Sbjct: 116 KIQAIAVCMENGNFKEAEEVFERIF 140
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 23.1 bits (49), Expect = 5.3
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 70 AEYARDALNGRFFAGRMVRAEL 91
AE A +G + G +R E
Sbjct: 66 AEDAVYGRDGYDYDGYRLRVEF 87
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 23.2 bits (49), Expect = 5.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 69 EAEYARDALNGRFFAGRMVRA 89
+A A +N GR ++A
Sbjct: 68 DALRAIQCVNNVVVDGRTLKA 88
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 22.7 bits (48), Expect = 6.3
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 4/56 (7%)
Query: 40 EVIVKIFVSFSKMQEAEYARDALNGR----FFAEAEYARDALNGRFFAGRMVRAEL 91
++ F F + + A+ A LNG ++ +
Sbjct: 18 TLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 73
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 22.7 bits (48), Expect = 6.8
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 71 EYARDALNGRFFAGRMVRAEL 91
A LN R R V+ L
Sbjct: 65 TAAVIDLNDRPIGSRKVKLVL 85
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 22.8 bits (48), Expect = 7.4
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 9/57 (15%)
Query: 35 DDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAEL 91
+ F F + A+ A + G GR ++ +L
Sbjct: 43 HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAE---------GGGLKLDGRQLKVDL 90
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 22.4 bits (47), Expect = 8.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 68 AEAEYARDALNGRFFAGRMVRAEL 91
+A Y + LNG G + ++
Sbjct: 54 EDARYCVEKLNGLKIEGYTLVTKV 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.364
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,983
Number of extensions: 15239
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 60
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)