BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2136
(166 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357631053|gb|EHJ78771.1| hypothetical protein KGM_03904 [Danaus plexippus]
Length = 591
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 108/121 (89%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQLSLEQ
Sbjct: 141 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLSLEQ 200
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVMLGGRNIKV VGRPSNMPQAQ+VIDEI EEAK YNRIYVASIHP+LTE+DI
Sbjct: 201 MNGVMLGGRNIKV------VGRPSNMPQAQAVIDEIQEEAKQYNRIYVASIHPELTEDDI 254
Query: 166 K 166
K
Sbjct: 255 K 255
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI EL ED I+ F FGPI +++ KHKG+ F+EY AA ++
Sbjct: 239 RIYVASIHPELTEDDIKNVFEAFGPITYCKLAYGASAHKHKGYGFIEYATLPAALEAIAS 298
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQA 134
MN LGG+ +++VGR P A
Sbjct: 299 MNLFDLGGQ-------YLRVGRAITPPNA 320
>gi|189234753|ref|XP_974490.2| PREDICTED: similar to STE20-like kinase (yeast) [Tribolium
castaneum]
Length = 1819
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQ+FLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 99 RVYVGSISFELKEDTIRQSFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 158
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQ+VIDEI EEAK YNRIYVASIHPDLTE+DI
Sbjct: 159 MNGVMIGGRNIKV------VGRPSNMPQAQAVIDEIQEEAKQYNRIYVASIHPDLTEDDI 212
Query: 166 K 166
K
Sbjct: 213 K 213
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L ED I+ F FGPI ++ KHKG+ F+EY+ +AA ++
Sbjct: 197 RIYVASIHPDLTEDDIKSVFEAFGPIIYCKLAQGSSGHKHKGYGFIEYETAQAANEAIAS 256
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 257 MNLFDLGGQYLRV 269
>gi|270001539|gb|EEZ97986.1| hypothetical protein TcasGA2_TC000381 [Tribolium castaneum]
Length = 591
Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQ+FLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 142 RVYVGSISFELKEDTIRQSFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 201
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQ+VIDEI EEAK YNRIYVASIHPDLTE+DI
Sbjct: 202 MNGVMIGGRNIKV------VGRPSNMPQAQAVIDEIQEEAKQYNRIYVASIHPDLTEDDI 255
Query: 166 K 166
K
Sbjct: 256 K 256
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L ED I+ F FGPI ++ KHKG+ F+EY+ +AA ++
Sbjct: 240 RIYVASIHPDLTEDDIKSVFEAFGPIIYCKLAQGSSGHKHKGYGFIEYETAQAANEAIAS 299
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 300 MNLFDLGGQYLRV 312
>gi|307195017|gb|EFN77085.1| Poly(U)-binding-splicing factor half pint [Harpegnathos saltator]
Length = 561
Score = 224 bits (572), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 107/121 (88%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 91 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 150
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTEEDI
Sbjct: 151 MNGVMIGGRNIKV------VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEEDI 204
Query: 166 K 166
K
Sbjct: 205 K 205
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L E+ I+ F FGPI ++ +HKG+ F+EY+ +AA ++
Sbjct: 189 RIYIASIHQDLTEEDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEYETMQAALEAIAS 248
Query: 106 MNGVMLGGRNIKVHF----PHVQVGRPSN 130
MN LGG+ ++V P+ +G PS
Sbjct: 249 MNLFDLGGQYLRVGRAITPPNALMGPPSG 277
>gi|322785180|gb|EFZ11893.1| hypothetical protein SINV_08068 [Solenopsis invicta]
Length = 545
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 74 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 133
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DI
Sbjct: 134 MNGVMIGGRNIKV------VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDI 187
Query: 166 K 166
K
Sbjct: 188 K 188
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L ED I+ F FGPI ++ +HKG+ F+EY+ +AA ++
Sbjct: 172 RIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEYETMQAALEAIAS 231
Query: 106 MNGVMLGGRNIKVHF----PHVQVGRPSN 130
MN LGG+ ++V P+ +G PS
Sbjct: 232 MNLFDLGGQYLRVGRAITPPNALMGPPSG 260
>gi|345484300|ref|XP_003424998.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
half pint-like [Nasonia vitripennis]
Length = 605
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/121 (88%), Positives = 112/121 (92%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 123 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPATQKHKGFAFVEYEIPEAAQLALEQ 182
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTEEDI
Sbjct: 183 MNGVMIGGRNIKV------VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEEDI 236
Query: 166 K 166
K
Sbjct: 237 K 237
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L E+ I+ F FGPI ++ +HKG+ F+EY+ ++A ++
Sbjct: 221 RIYIASIHQDLTEEDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEYESMQSALEAIAS 280
Query: 106 MNGVMLGGRNIKVHF----PHVQVGRPSN 130
MN LGG+ ++V P+ +G PS
Sbjct: 281 MNLFDLGGQYLRVGRAITPPNALMGPPSG 309
>gi|340725363|ref|XP_003401040.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Bombus
terrestris]
gi|350403872|ref|XP_003486932.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Bombus
impatiens]
Length = 592
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 121 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 180
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DI
Sbjct: 181 MNGVMIGGRNIKV------VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDI 234
Query: 166 K 166
K
Sbjct: 235 K 235
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L ED I+ F FGPI ++ +HKG+ F+EY+ +AA ++
Sbjct: 219 RIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEYETMQAALEAIAS 278
Query: 106 MNGVMLGGRNIKVHF----PHVQVGRPSN 130
MN LGG+ ++V P+ +G PS
Sbjct: 279 MNLFDLGGQYLRVGRAITPPNALMGPPSG 307
>gi|328783360|ref|XP_001121000.2| PREDICTED: poly(U)-binding-splicing factor half pint-like [Apis
mellifera]
Length = 592
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 121 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 180
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DI
Sbjct: 181 MNGVMIGGRNIKV------VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDI 234
Query: 166 K 166
K
Sbjct: 235 K 235
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L ED I+ F FGPI ++ +HKG+ F+EY+ +AA ++
Sbjct: 219 RIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEYETMQAALEAIAS 278
Query: 106 MNGVMLGGRNIKVHF----PHVQVGRPSN 130
MN LGG+ ++V P+ +G PS
Sbjct: 279 MNLFDLGGQYLRVGRAITPPNALMGPPSG 307
>gi|380016392|ref|XP_003692169.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Apis
florea]
Length = 592
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 121 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 180
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DI
Sbjct: 181 MNGVMIGGRNIKV------VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDI 234
Query: 166 K 166
K
Sbjct: 235 K 235
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L ED I+ F FGPI ++ +HKG+ F+EY+ +AA ++
Sbjct: 219 RIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEYETMQAALEAIAS 278
Query: 106 MNGVMLGGRNIKVHF----PHVQVGRPSN 130
MN LGG+ ++V P+ +G PS
Sbjct: 279 MNLFDLGGQYLRVGRAITPPNALMGPPSG 307
>gi|383861059|ref|XP_003706004.1| PREDICTED: poly(U)-binding-splicing factor half pint-like
[Megachile rotundata]
Length = 592
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 121 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 180
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DI
Sbjct: 181 MNGVMIGGRNIKV------VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDI 234
Query: 166 K 166
K
Sbjct: 235 K 235
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L ED I+ F FGPI ++ +HKG+ F+EY+ +AA ++
Sbjct: 219 RIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEYETMQAALEAIAS 278
Query: 106 MNGVMLGGRNIKVHF----PHVQVGRPSN 130
MN LGG+ ++V P+ +G PS
Sbjct: 279 MNLFDLGGQYLRVGRAITPPNALMGPPSG 307
>gi|332022211|gb|EGI62526.1| Poly(U)-binding-splicing factor half pint [Acromyrmex echinatior]
Length = 609
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 137 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 196
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DI
Sbjct: 197 MNGVMIGGRNIKV------VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDI 250
Query: 166 K 166
K
Sbjct: 251 K 251
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L ED I+ F FGPI ++ +HKG+ F+EY+ +AA ++
Sbjct: 235 RIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEYETMQAALEAIAS 294
Query: 106 MNGVMLGGRNIKVHF----PHVQVGRPSN 130
MN LGG+ ++V P+ +G PS
Sbjct: 295 MNLFDLGGQYLRVGRAITPPNALMGPPSG 323
>gi|242021379|ref|XP_002431122.1| Poly U-binding-splicing factor half pint, putative [Pediculus
humanus corporis]
gi|212516371|gb|EEB18384.1| Poly U-binding-splicing factor half pint, putative [Pediculus
humanus corporis]
Length = 571
Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 112/121 (92%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP+TQKHKGFAFVEYDIPEAAQL+LEQ
Sbjct: 103 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYDIPEAAQLALEQ 162
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIK VGRPSNMPQAQ+VIDEITEEAK YNRIYVASIH DLTE+DI
Sbjct: 163 MNGVMIGGRNIK-------VGRPSNMPQAQAVIDEITEEAKHYNRIYVASIHSDLTEQDI 215
Query: 166 K 166
+
Sbjct: 216 Q 216
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E I+ F FG IK ++ KHKG+ F+EY+ ++A ++
Sbjct: 200 RIYVASIHSDLTEQDIQSVFEAFGSIKYCKLAQGHAPNKHKGYGFIEYETLQSALEAIGS 259
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 260 MNLFDLGGQYLRV 272
>gi|307177474|gb|EFN66601.1| Poly(U)-binding-splicing factor half pint [Camponotus floridanus]
Length = 510
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 113/121 (93%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP+TQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 39 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 98
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIKV VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DI
Sbjct: 99 MNGVMIGGRNIKV------VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDI 152
Query: 166 K 166
K
Sbjct: 153 K 153
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L ED I+ F FGPI ++ +HKG+ F+EY+ +AA ++
Sbjct: 137 RIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGSSPHRHKGYGFIEYETMQAALEAIAS 196
Query: 106 MNGVMLGGRNIKVHF----PHVQVGRPSN 130
MN LGG+ ++V P+ +G PS
Sbjct: 197 MNLFDLGGQYLRVGRAITPPNALMGPPSG 225
>gi|157105905|ref|XP_001649078.1| fuse-binding protein-interacting repressor siahbp1 [Aedes aegypti]
gi|108879987|gb|EAT44212.1| AAEL004415-PA [Aedes aegypti]
Length = 672
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 105/121 (86%), Positives = 108/121 (89%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AFLPFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 187 RVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 246
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG MLGGRNIK VGRPSNMPQAQ VIDEI EEAK YNRIY+ASIHPDLTEEDI
Sbjct: 247 MNGAMLGGRNIK-------VGRPSNMPQAQQVIDEIQEEAKNYNRIYIASIHPDLTEEDI 299
Query: 166 K 166
K
Sbjct: 300 K 300
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L E+ I+ F FGPI + MS HKG+AF+EY ++A ++
Sbjct: 284 RIYIASIHPDLTEEDIKSVFEAFGPIVTCKMSQGSAAHTHKGYAFIEYQTNQSAIEAIAS 343
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 344 MNLFDLGGQLLRV 356
>gi|118785284|ref|XP_314526.3| AGAP010553-PA [Anopheles gambiae str. PEST]
gi|116128011|gb|EAA09944.4| AGAP010553-PA [Anopheles gambiae str. PEST]
Length = 643
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/121 (86%), Positives = 108/121 (89%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AFLPFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 161 RVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 220
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG MLGGRNIK VGRPSNMPQAQ VIDEI EEAK YNRIY+ASIHPDLTEEDI
Sbjct: 221 MNGAMLGGRNIK-------VGRPSNMPQAQQVIDEIQEEAKSYNRIYIASIHPDLTEEDI 273
Query: 166 K 166
K
Sbjct: 274 K 274
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L E+ I+ F FGPI + MS HKG+ F+EY ++A ++
Sbjct: 258 RIYIASIHPDLTEEDIKSVFEAFGPIMTCKMSQGNAVHTHKGYGFIEYQTNQSAIEAIAS 317
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 318 MNLFDLGGQLLRV 330
>gi|328696967|ref|XP_001951881.2| PREDICTED: poly(U)-binding-splicing factor half pint-like
[Acyrthosiphon pisum]
Length = 603
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/121 (87%), Positives = 111/121 (91%), Gaps = 6/121 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKED+I+QAF PFG IKSINMSWDPITQKHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 142 RVYVGSISFELKEDSIKQAFSPFGCIKSINMSWDPITQKHKGFAFVEYEIPEAAQLALEQ 201
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVMLGGRNIKV VGRPSNMPQAQSVIDEI EEAK YNRIYVASIHPDLTE+DI
Sbjct: 202 MNGVMLGGRNIKV------VGRPSNMPQAQSVIDEIQEEAKQYNRIYVASIHPDLTEDDI 255
Query: 166 K 166
K
Sbjct: 256 K 256
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L ED I+ F FGPI++ ++ +H+G+ F+EY+ +AA ++
Sbjct: 240 RIYVASIHPDLTEDDIKSVFEAFGPIRTCKLAQGSTPNRHRGYGFIEYEGRQAAIEAISS 299
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 300 MNLFDLGGQYLRV 312
>gi|170057956|ref|XP_001864710.1| fuse-binding protein-interacting repressor siahbp1 [Culex
quinquefasciatus]
gi|167877220|gb|EDS40603.1| fuse-binding protein-interacting repressor siahbp1 [Culex
quinquefasciatus]
Length = 661
Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 105/121 (86%), Positives = 108/121 (89%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AFLPFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 174 RVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 233
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG MLGGRNIK VGRPSNMPQAQ VIDEI EEAK YNRIY+ASIHPDLTEEDI
Sbjct: 234 MNGAMLGGRNIK-------VGRPSNMPQAQQVIDEIQEEAKNYNRIYIASIHPDLTEEDI 286
Query: 166 K 166
K
Sbjct: 287 K 287
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L E+ I+ F FG I + MS HKG+AF+EY ++A ++
Sbjct: 271 RIYIASIHPDLTEEDIKSVFEAFGAIATCKMSQGSSAHSHKGYAFIEYQTNQSAIEAIAS 330
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 331 MNLFDLGGQLLRV 343
>gi|289724641|gb|ADD18299.1| poly-U binding splicing factor [Glossina morsitans morsitans]
Length = 611
Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 102/121 (84%), Positives = 108/121 (89%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AFLPFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 101 RVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 160
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDEI EEAK +NRIYVASIHPDL+EEDI
Sbjct: 161 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEIQEEAKSFNRIYVASIHPDLSEEDI 213
Query: 166 K 166
K
Sbjct: 214 K 214
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 198 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAPGTSLHTHKGYGFIEYANKQAMDEAIAS 257
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 258 MNLFDLGGQLLRV 270
>gi|195427509|ref|XP_002061819.1| GK17204 [Drosophila willistoni]
gi|194157904|gb|EDW72805.1| GK17204 [Drosophila willistoni]
Length = 631
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 111 RVYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 170
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 171 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 223
Query: 166 K 166
K
Sbjct: 224 K 224
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 208 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 267
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 268 MNLFDLGGQLLRV 280
>gi|195167652|ref|XP_002024647.1| GL22585 [Drosophila persimilis]
gi|198467049|ref|XP_001354234.2| GA11385 [Drosophila pseudoobscura pseudoobscura]
gi|194108052|gb|EDW30095.1| GL22585 [Drosophila persimilis]
gi|198149485|gb|EAL31287.2| GA11385 [Drosophila pseudoobscura pseudoobscura]
Length = 653
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 191 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 288 MNLFDLGGQLLRV 300
>gi|194747299|ref|XP_001956090.1| GF25032 [Drosophila ananassae]
gi|190623372|gb|EDV38896.1| GF25032 [Drosophila ananassae]
Length = 643
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 130 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 189
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 190 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 242
Query: 166 K 166
K
Sbjct: 243 K 243
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 227 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 286
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 287 MNLFDLGGQLLRV 299
>gi|195586940|ref|XP_002083225.1| GD13472 [Drosophila simulans]
gi|194195234|gb|EDX08810.1| GD13472 [Drosophila simulans]
Length = 541
Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 110 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 169
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 170 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 222
Query: 166 K 166
K
Sbjct: 223 K 223
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 207 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 266
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 267 MNLFDLGGQLLRV 279
>gi|6118522|gb|AAF04132.1|AF190745_1 poly-U binding splicing factor [Drosophila melanogaster]
Length = 637
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 191 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 288 MNLFDLGGQLLRV 300
>gi|19224321|gb|AAL86452.1|AF479079_1 half pint [Drosophila melanogaster]
Length = 637
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 191 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 288 MNLFDLGGQLLRV 300
>gi|195490418|ref|XP_002093131.1| GE20955 [Drosophila yakuba]
gi|194179232|gb|EDW92843.1| GE20955 [Drosophila yakuba]
Length = 637
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 191 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 288 MNLFDLGGQLLRV 300
>gi|24655228|ref|NP_525123.2| poly U binding factor 68kD, isoform A [Drosophila melanogaster]
gi|41688713|sp|Q8T6B9.2|PUF68_DROME RecName: Full=Poly(U)-binding-splicing factor half pint;
Short=Protein half pint; AltName: Full=68 kDa
poly(U)-binding-splicing factor; AltName: Full=PUF60
homolog
gi|7292088|gb|AAF47501.1| poly U binding factor 68kD, isoform A [Drosophila melanogaster]
Length = 637
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 191 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 288 MNLFDLGGQLLRV 300
>gi|195336594|ref|XP_002034920.1| GM14211 [Drosophila sechellia]
gi|194128013|gb|EDW50056.1| GM14211 [Drosophila sechellia]
Length = 616
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 110 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 169
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 170 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 222
Query: 166 K 166
K
Sbjct: 223 K 223
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 207 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 266
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 267 MNLFDLGGQLLRV 279
>gi|24655233|ref|NP_728610.1| poly U binding factor 68kD, isoform B [Drosophila melanogaster]
gi|24655237|ref|NP_728611.1| poly U binding factor 68kD, isoform C [Drosophila melanogaster]
gi|24655242|ref|NP_728612.1| poly U binding factor 68kD, isoform D [Drosophila melanogaster]
gi|281365434|ref|NP_001163315.1| poly U binding factor 68kD, isoform E [Drosophila melanogaster]
gi|281365436|ref|NP_001163316.1| poly U binding factor 68kD, isoform F [Drosophila melanogaster]
gi|281365438|ref|NP_001163317.1| poly U binding factor 68kD, isoform G [Drosophila melanogaster]
gi|281365440|ref|NP_001163318.1| poly U binding factor 68kD, isoform H [Drosophila melanogaster]
gi|281365442|ref|NP_001163319.1| poly U binding factor 68kD, isoform I [Drosophila melanogaster]
gi|281365444|ref|NP_001163320.1| poly U binding factor 68kD, isoform J [Drosophila melanogaster]
gi|7292089|gb|AAF47502.1| poly U binding factor 68kD, isoform C [Drosophila melanogaster]
gi|10727221|gb|AAG22221.1| poly U binding factor 68kD, isoform B [Drosophila melanogaster]
gi|16768670|gb|AAL28554.1| HL02140p [Drosophila melanogaster]
gi|23092776|gb|AAG22222.2| poly U binding factor 68kD, isoform D [Drosophila melanogaster]
gi|27820105|gb|AAO25077.1| GH01086p [Drosophila melanogaster]
gi|220953270|gb|ACL89178.1| pUf68-PB [synthetic construct]
gi|272454997|gb|ACZ94587.1| poly U binding factor 68kD, isoform E [Drosophila melanogaster]
gi|272454998|gb|ACZ94588.1| poly U binding factor 68kD, isoform F [Drosophila melanogaster]
gi|272454999|gb|ACZ94589.1| poly U binding factor 68kD, isoform G [Drosophila melanogaster]
gi|272455000|gb|ACZ94590.1| poly U binding factor 68kD, isoform H [Drosophila melanogaster]
gi|272455001|gb|ACZ94591.1| poly U binding factor 68kD, isoform I [Drosophila melanogaster]
gi|272455002|gb|ACZ94592.1| poly U binding factor 68kD, isoform J [Drosophila melanogaster]
Length = 545
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 39 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 98
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 99 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 151
Query: 166 K 166
K
Sbjct: 152 K 152
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 136 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 195
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 196 MNLFDLGGQLLRV 208
>gi|195135155|ref|XP_002012000.1| GI16722 [Drosophila mojavensis]
gi|193918264|gb|EDW17131.1| GI16722 [Drosophila mojavensis]
Length = 616
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/121 (81%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 110 RVYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 169
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+E+DI
Sbjct: 170 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEDDI 222
Query: 166 K 166
K
Sbjct: 223 K 223
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L ED I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 207 RIYVASIHPDLSEDDIKSVFEAFGPILYCKLAQGTSVHTHKGYGFIEYANKQAMDEAIAS 266
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 267 MNLFDLGGQLLRV 279
>gi|195014784|ref|XP_001984080.1| GH15204 [Drosophila grimshawi]
gi|193897562|gb|EDV96428.1| GH15204 [Drosophila grimshawi]
Length = 643
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 99/121 (81%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 133 RVYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 192
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+E+DI
Sbjct: 193 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEDDI 245
Query: 166 K 166
K
Sbjct: 246 K 246
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L ED I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 230 RIYVASIHPDLSEDDIKSVFEAFGPILYCKLAQGSSVHTHKGYGFIEYANKQAMDEAIAS 289
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 290 MNLFDLGGQLLRV 302
>gi|195375406|ref|XP_002046492.1| GJ12466 [Drosophila virilis]
gi|194153650|gb|EDW68834.1| GJ12466 [Drosophila virilis]
Length = 645
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 99/121 (81%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 144 RVYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 203
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+E+DI
Sbjct: 204 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEDDI 256
Query: 166 K 166
K
Sbjct: 257 K 257
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L ED I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 241 RIYVASIHPDLSEDDIKSVFEAFGPILYCKLAQGTSVHTHKGYGFIEYANKQAMDEAIAS 300
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 301 MNLFDLGGQLLRV 313
>gi|194864858|ref|XP_001971142.1| GG14596 [Drosophila erecta]
gi|190652925|gb|EDV50168.1| GG14596 [Drosophila erecta]
Length = 731
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 225 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 284
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 285 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 337
Query: 166 K 166
K
Sbjct: 338 K 338
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 322 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 381
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 382 MNLFDLGGQLLRV 394
>gi|291231691|ref|XP_002735797.1| PREDICTED: poly-U binding splicing factor 60KDa-like [Saccoglossus
kowalevskii]
Length = 528
Score = 207 bits (528), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 95/121 (78%), Positives = 109/121 (90%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI+FEL+EDTI+QAFLPFGPIK+IN+SWDP+T KHKGFAFVEYD+PEAAQL+LEQ
Sbjct: 132 RVYVGSINFELREDTIKQAFLPFGPIKNINLSWDPVTMKHKGFAFVEYDLPEAAQLALEQ 191
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIK VGRPSNMPQAQ +ID++ EEAK YNRIYVAS+H DL+EEDI
Sbjct: 192 MNGVMIGGRNIK-------VGRPSNMPQAQPIIDQVMEEAKQYNRIYVASVHHDLSEEDI 244
Query: 166 K 166
K
Sbjct: 245 K 245
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L E+ I+ F FG IK +S D I KHKG+ F+EY+ ++AQ ++
Sbjct: 229 RIYVASVHHDLSEEDIKSVFEAFGKIKMCMLSTDSIPSKHKGYGFIEYERNQSAQDAIAS 288
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 289 MNLFDLGGQYLRV 301
>gi|321479211|gb|EFX90167.1| hypothetical protein DAPPUDRAFT_300177 [Daphnia pulex]
Length = 612
Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/121 (79%), Positives = 109/121 (90%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFEL+EDT+RQ+F PFGPIKSI MSWDPITQKHKGFAFVEY++PEAAQL+LEQ
Sbjct: 121 RVYVGSISFELREDTVRQSFHPFGPIKSITMSWDPITQKHKGFAFVEYELPEAAQLALEQ 180
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV++GGRNIK VGRPSNMPQAQ VIDEI EE++ YNRI++AS+HPDLTEEDI
Sbjct: 181 MNGVVIGGRNIK-------VGRPSNMPQAQPVIDEIMEESRHYNRIFIASVHPDLTEEDI 233
Query: 166 K 166
K
Sbjct: 234 K 234
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+++ S+ +L E+ I+ F FG IK ++ P KH+G+ F+EY+ ++A ++
Sbjct: 218 RIFIASVHPDLTEEDIKSVFEAFGKIKMCQLAQGPAPGKHRGYGFIEYETTQSAHDAIAS 277
Query: 106 MNGVMLGGRNIKV 118
MN LGG++++V
Sbjct: 278 MNMFDLGGQHLRV 290
>gi|427776743|gb|JAA53823.1| Putative polypyrimidine tract-binding protein puf60 rrm superfamily
[Rhipicephalus pulchellus]
Length = 579
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/121 (77%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTI+QAF PFGPIKSINMSWDP+TQKHKGFAFVEY++PEAAQL+LEQ
Sbjct: 75 RVYVGSISFELKEDTIKQAFRPFGPIKSINMSWDPVTQKHKGFAFVEYELPEAAQLALEQ 134
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV++GGRNIK VGRPSNMPQA ++D+I EEAK YNRIY+AS+H DLTE DI
Sbjct: 135 MNGVLIGGRNIK-------VGRPSNMPQAAPILDQIMEEAKTYNRIYIASVHQDLTESDI 187
Query: 166 K 166
+
Sbjct: 188 Q 188
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ S+ +L E I+ F FG I+S + KHK + F+EY+ A ++
Sbjct: 172 RIYIASVHQDLTESDIQSVFEAFGKIRSCKLIPSSTPGKHKEYGFIEYETNVGANEAIAS 231
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 232 MNLFDLGGQYLRV 244
>gi|346468399|gb|AEO34044.1| hypothetical protein [Amblyomma maculatum]
Length = 577
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/121 (77%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTI+QAF PFGPIKSINMSWDP+TQKHKGFAFVEY++PEAAQL+LEQ
Sbjct: 75 RVYVGSISFELKEDTIKQAFRPFGPIKSINMSWDPVTQKHKGFAFVEYELPEAAQLALEQ 134
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV++GGRNIK VGRPSNMPQA ++D+I EEAK YNRIY+AS+H DLTE DI
Sbjct: 135 MNGVLIGGRNIK-------VGRPSNMPQAAPILDQIMEEAKTYNRIYIASVHQDLTESDI 187
Query: 166 K 166
+
Sbjct: 188 Q 188
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ S+ +L E I+ F FG I+S + KHK + F+EY+ A ++
Sbjct: 172 RIYIASVHQDLTESDIQSVFEAFGKIRSCKLIPSSTPGKHKEYGFIEYETNVGANEAIAS 231
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 232 MNLFDLGGQYLRV 244
>gi|427794969|gb|JAA62936.1| Putative polypyrimidine tract-binding protein puf60 rrm
superfamily, partial [Rhipicephalus pulchellus]
Length = 416
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/121 (77%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTI+QAF PFGPIKSINMSWDP+TQKHKGFAFVEY++PEAAQL+LEQ
Sbjct: 155 RVYVGSISFELKEDTIKQAFRPFGPIKSINMSWDPVTQKHKGFAFVEYELPEAAQLALEQ 214
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV++GGRNIK VGRPSNMPQA ++D+I EEAK YNRIY+AS+H DLTE DI
Sbjct: 215 MNGVLIGGRNIK-------VGRPSNMPQAAPILDQIMEEAKTYNRIYIASVHQDLTESDI 267
Query: 166 K 166
+
Sbjct: 268 Q 268
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 28 DLKQVGPITPDVNSNSPL--RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI + + R+Y+ S+ +L E I+ F FG I+S + KH
Sbjct: 232 NMPQAAPILDQIMEEAKTYNRIYIASVHQDLTESDIQSVFEAFGKIRSCKLIPSSTPGKH 291
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
K + F+EY+ A ++ MN LGG+ ++V
Sbjct: 292 KEYGFIEYETNVGANEAIASMNLFDLGGQYLRV 324
>gi|241315296|ref|XP_002408027.1| RNA-binding protein, putative [Ixodes scapularis]
gi|215497243|gb|EEC06737.1| RNA-binding protein, putative [Ixodes scapularis]
Length = 509
Score = 201 bits (511), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 93/120 (77%), Positives = 106/120 (88%), Gaps = 7/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVGSISFELKEDTI+QAF PFGPIKSINMSWDP+TQKHKGFAFVEY++PEAAQL+LEQM
Sbjct: 77 VYVGSISFELKEDTIKQAFRPFGPIKSINMSWDPVTQKHKGFAFVEYELPEAAQLALEQM 136
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
NGV++GGRNIK VGRPSNMPQA ++D+I EEAK YNRIY+AS+H DLTE DI+
Sbjct: 137 NGVLIGGRNIK-------VGRPSNMPQAAPILDQIMEEAKTYNRIYIASVHQDLTEADIQ 189
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 28 DLKQVGPITPDVNSNSPL--RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI + + R+Y+ S+ +L E I+ F FG I++ + KH
Sbjct: 153 NMPQAAPILDQIMEEAKTYNRIYIASVHQDLTEADIQSVFEAFGKIRTCKLVPSSTPGKH 212
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
K + F+EY+ A ++ MN LGG+ ++V
Sbjct: 213 KEYGFIEYETNVGANEAIASMNLFDLGGQYLRV 245
>gi|390345175|ref|XP_785572.2| PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform 2
[Strongylocentrotus purpuratus]
Length = 574
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/121 (79%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAF PFGPIKSINMSWDPIT KHKGFAFVEYD+PEAAQL+LEQ
Sbjct: 112 RVYVGSISFELKEDTIRQAFHPFGPIKSINMSWDPITMKHKGFAFVEYDLPEAAQLALEQ 171
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIK VGRPSNMPQAQ V+D I EEAK RI++ SIH DL+ EDI
Sbjct: 172 MNGVMIGGRNIK-------VGRPSNMPQAQPVVDAIMEEAKHQPRIFITSIHSDLSSEDI 224
Query: 166 K 166
K
Sbjct: 225 K 225
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+++ SI +L + I+ F FG I S ++ D + KHKG +EYD ++A ++
Sbjct: 209 RIFITSIHSDLSSEDIKSVFEAFGKIISCSLPSDSVGGKHKGHGIIEYDSMQSASDAISS 268
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 269 MNLFDLGGQFLRV 281
>gi|443719882|gb|ELU09834.1| hypothetical protein CAPTEDRAFT_172934 [Capitella teleta]
Length = 635
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/121 (76%), Positives = 105/121 (86%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSI+FE+KEDTI+QAFLPFGPIKS+N+SWDPIT KHKGFAF+EYDIPEAAQLSLEQ
Sbjct: 146 RIYVGSINFEIKEDTIKQAFLPFGPIKSVNLSWDPITNKHKGFAFIEYDIPEAAQLSLEQ 205
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIK VGRPSNMPQAQ +I ++ EEAK YNRIYV SIH DL E D+
Sbjct: 206 MNGVMIGGRNIK-------VGRPSNMPQAQPIIAQLAEEAKTYNRIYVTSIHADLCESDV 258
Query: 166 K 166
+
Sbjct: 259 Q 259
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT-QKHKGFAFVEYDIPEAAQLSLE 104
R+YV SI +L E ++ F FG I + DP KH+G+ F+EYD +AA ++
Sbjct: 243 RIYVTSIHADLCESDVQSVFEAFGKIVMCQLQPDPAKPGKHRGYGFIEYDTNQAALDAVA 302
Query: 105 QMNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 303 SMNLFDLGGQYLRV 316
>gi|390345173|ref|XP_003726279.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform 1
[Strongylocentrotus purpuratus]
Length = 601
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 96/121 (79%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIRQAF PFGPIKSINMSWDPIT KHKGFAFVEYD+PEAAQL+LEQ
Sbjct: 155 RVYVGSISFELKEDTIRQAFHPFGPIKSINMSWDPITMKHKGFAFVEYDLPEAAQLALEQ 214
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVM+GGRNIK VGRPSNMPQAQ V+D I EEAK RI++ SIH DL+ EDI
Sbjct: 215 MNGVMIGGRNIK-------VGRPSNMPQAQPVVDAIMEEAKHQPRIFITSIHSDLSSEDI 267
Query: 166 K 166
K
Sbjct: 268 K 268
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+++ SI +L + I+ F FG I S ++ D + KHKG +EYD ++A ++
Sbjct: 252 RIFITSIHSDLSSEDIKSVFEAFGKIISCSLPSDSVGGKHKGHGIIEYDSMQSASDAISS 311
Query: 106 MNGVMLGGRNIKVH---FPHVQVGRPS 129
MN LGG+ ++V P G P+
Sbjct: 312 MNLFDLGGQFLRVGRAITPSTMTGFPT 338
>gi|348503274|ref|XP_003439190.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oreochromis
niloticus]
Length = 526
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 90/121 (74%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEYD+PEAAQL+LEQ
Sbjct: 100 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQ 159
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ YNRIYVAS+HPDL+++DI
Sbjct: 160 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDI 212
Query: 166 K 166
K
Sbjct: 213 K 213
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T +H+GF F+EY+ P++A ++
Sbjct: 197 RIYVASVHPDLSDDDIKSVFEAFGRIKSCTLARDPTTGRHRGFGFIEYEKPQSALDAVSS 256
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 257 MNLFDLGGQYLRV 269
>gi|410909355|ref|XP_003968156.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Takifugu
rubripes]
Length = 526
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/121 (73%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEYD+PEAAQL+LEQ
Sbjct: 100 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQ 159
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DI
Sbjct: 160 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDI 212
Query: 166 K 166
K
Sbjct: 213 K 213
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP + +H+GF F+EY+ P++A ++
Sbjct: 197 RIYVASVHPDLSDDDIKSVFEAFGRIKSCMLARDPTSGRHRGFGFIEYEKPQSALDAVSS 256
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 257 MNLFDLGGQYLRV 269
>gi|47221195|emb|CAG05516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 520
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/121 (73%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEYD+PEAAQL+LEQ
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQ 153
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DI
Sbjct: 154 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDI 206
Query: 166 K 166
K
Sbjct: 207 K 207
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP + +H+GF F+EY+ P++A ++
Sbjct: 191 RIYVASVHPDLSDDDIKSVFEAFGRIKSCMLARDPTSGRHRGFGFIEYEKPQSALDAVSS 250
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 251 MNLFDLGGQYLRV 263
>gi|317420076|emb|CBN82112.1| Poly(U)-binding-splicing factor PUF60 [Dicentrarchus labrax]
Length = 513
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/121 (73%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEYD+PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T +H+GF F+EY+ P++A ++
Sbjct: 184 RIYVASVHPDLSDDDIKSVFEAFGRIKSCTLARDPTTGRHRGFGFIEYEKPQSALDAVSS 243
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 244 MNLFDLGGQYLRV 256
>gi|134025329|gb|AAI35084.1| LOC562370 protein [Danio rerio]
Length = 379
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 88/121 (72%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 152
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DI
Sbjct: 153 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDI 205
Query: 166 K 166
K
Sbjct: 206 K 206
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 49/73 (67%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS +++ DP T KHKG+ F+EYD ++AQ ++
Sbjct: 190 RIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSS 249
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 250 MNLFDLGGQYLRV 262
>gi|432929636|ref|XP_004081203.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oryzias
latipes]
Length = 526
Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats.
Identities = 90/121 (74%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEYD+PEAAQL+LEQ
Sbjct: 100 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQ 159
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ YNRIYVAS+HPDL+++DI
Sbjct: 160 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDI 212
Query: 166 K 166
K
Sbjct: 213 K 213
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP + +H+GF F+EY+ P++A ++
Sbjct: 197 RIYVASVHPDLSDDDIKSVFEAFGRIKSCMLARDPTSGRHRGFGFIEYEKPQSAVDAVSS 256
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 257 MNLFDLGGQYLRV 269
>gi|157743332|ref|NP_001099058.1| poly(U)-binding-splicing factor PUF60 [Danio rerio]
gi|157423233|gb|AAI53302.1| LOC562370 protein [Danio rerio]
Length = 518
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 88/121 (72%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 152
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DI
Sbjct: 153 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDI 205
Query: 166 K 166
K
Sbjct: 206 K 206
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 49/73 (67%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS +++ DP T KHKG+ F+EYD ++AQ ++
Sbjct: 190 RIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSS 249
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 250 MNLFDLGGQYLRV 262
>gi|328704296|ref|XP_001948399.2| PREDICTED: poly(U)-binding-splicing factor half pint-like
[Acyrthosiphon pisum]
Length = 572
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/122 (77%), Positives = 107/122 (87%), Gaps = 7/122 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVG+ISFELKED+I+QAF PFG IKSI+MSWDPIT+KHKG+AFVEY+IPEAAQL+LE
Sbjct: 108 RVYVGNISFELKEDSIKQAFSPFGFIKSIDMSWDPITRKHKGYAFVEYEIPEAAQLALEH 167
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAK-LYNRIYVASIHPDLTEED 164
MNGV+ GGRNIKV VGRPSNMPQAQSVIDEI EEAK YN +YVASIH +LTE+D
Sbjct: 168 MNGVVFGGRNIKV------VGRPSNMPQAQSVIDEIWEEAKQYYNFVYVASIHLNLTEDD 221
Query: 165 IK 166
IK
Sbjct: 222 IK 223
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYV SI L ED I+ F FGPI++ ++ + +H+G+ F+EY+ +AA ++ M
Sbjct: 208 VYVASIHLNLTEDDIKCVFEAFGPIRTCTLAKSRTSNRHRGYGFIEYEGHQAAIEAISSM 267
Query: 107 NGVMLGGRNIKV 118
N LGGR+++V
Sbjct: 268 NLFDLGGRSLRV 279
>gi|348541381|ref|XP_003458165.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oreochromis
niloticus]
Length = 513
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 90 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEMPEAAQLALEQ 149
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN V+LGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DI
Sbjct: 150 MNSVVLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDI 202
Query: 166 K 166
K
Sbjct: 203 K 203
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ +P T +HKG+ F+EY+ ++AQ ++
Sbjct: 187 RIYVASVHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGRHKGYGFIEYEKAQSAQDAVAS 246
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 247 MNLFDLGGQYLRV 259
>gi|187607191|ref|NP_001120082.1| poly-U binding splicing factor 60KDa [Xenopus (Silurana)
tropicalis]
gi|165971204|gb|AAI58522.1| LOC100145091 protein [Xenopus (Silurana) tropicalis]
Length = 507
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/121 (72%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 78 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 137
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL++EDI
Sbjct: 138 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARSFNRIYVASVHQDLSDEDI 190
Query: 166 K 166
K
Sbjct: 191 K 191
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L ++ I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 175 RIYVASVHQDLSDEDIKSVFEAFGKIKSCMLARDPTTGKHKGYGFIEYEKGQSSQDAVSS 234
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 235 MNLFDLGGQYLRV 247
>gi|426235336|ref|XP_004011640.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60 [Ovis aries]
Length = 506
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 84 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 143
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 144 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 196
Query: 166 K 166
K
Sbjct: 197 K 197
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 181 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 240
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 241 MNLFDLGGQYLRV 253
>gi|169404577|pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
gi|169404578|pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 30 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 90 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 142
Query: 166 K 166
K
Sbjct: 143 K 143
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 127 RIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 187 MNLFDLGGQYLRV 199
>gi|260828249|ref|XP_002609076.1| hypothetical protein BRAFLDRAFT_60256 [Branchiostoma floridae]
gi|229294430|gb|EEN65086.1| hypothetical protein BRAFLDRAFT_60256 [Branchiostoma floridae]
Length = 495
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSI +EL+EDT++QAF PFGPIK+I++SWDP+T KHKG+AF+EY+IPEAAQL+LEQ
Sbjct: 71 RIYVGSIYYELREDTLKQAFSPFGPIKNIDLSWDPLTMKHKGYAFIEYEIPEAAQLALEQ 130
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGVMLGGRNIK VGRPSNM AQ ++D++ EEAK YNRIYV+S+HPDL +DI
Sbjct: 131 MNGVMLGGRNIK-------VGRPSNMASAQPIVDQLVEEAKHYNRIYVSSVHPDLAADDI 183
Query: 166 K 166
K
Sbjct: 184 K 184
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L D I+ F FG IKS ++ D +T KHKG+ F+EY+ P++AQ ++
Sbjct: 168 RIYVSSVHPDLAADDIKSVFEAFGKIKSCELAPDAVTGKHKGYGFLEYEKPQSAQDAIAS 227
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 228 MNLFDLGGQYLRV 240
>gi|449279837|gb|EMC87291.1| Poly(U)-binding-splicing factor PUF60, partial [Columba livia]
Length = 513
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 152
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 153 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 205
Query: 166 K 166
K
Sbjct: 206 K 206
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 190 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 249
Query: 106 MNGVMLGGRN 115
MN LGG N
Sbjct: 250 MNLFDLGGVN 259
>gi|160332383|sp|Q6IQE0.2|PU60B_DANRE RecName: Full=Poly(U)-binding-splicing factor PUF60-B
Length = 516
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRP ++ QAQ +I+++ EEA+ YNRIYVASIHPDL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L +D I+ F FG IKS ++ +P T KHKGF F+EY+ P+++ ++
Sbjct: 184 RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSS 243
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 244 MNLFDLGGQYLRV 256
>gi|327290985|ref|XP_003230202.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Anolis
carolinensis]
Length = 541
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 109 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 168
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 169 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 221
Query: 166 K 166
K
Sbjct: 222 K 222
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 206 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 265
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 266 MNLFDLGGQYLRV 278
>gi|207079925|ref|NP_001128734.1| DKFZP468L0227 protein [Pongo abelii]
gi|402794126|ref|NP_001258026.1| poly(U)-binding-splicing factor PUF60 isoform e [Homo sapiens]
gi|426360969|ref|XP_004047700.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Gorilla
gorilla gorilla]
gi|441648309|ref|XP_003280820.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2
[Nomascus leucogenys]
gi|55725023|emb|CAH89379.1| hypothetical protein [Pongo abelii]
Length = 513
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 84 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 143
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 144 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 196
Query: 166 K 166
K
Sbjct: 197 K 197
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 181 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 240
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 241 MNLFDLGGQYLRV 253
>gi|403302944|ref|XP_003942108.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 509
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 244 MNLFDLGGQYLRV 256
>gi|296480748|tpg|DAA22863.1| TPA: poly(U)-binding-splicing factor PUF60 [Bos taurus]
Length = 530
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 161 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 213
Query: 166 K 166
K
Sbjct: 214 K 214
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 258 MNLFDLGGQYLRV 270
>gi|410042302|ref|XP_003951411.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 513
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 84 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 143
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 144 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 196
Query: 166 K 166
K
Sbjct: 197 K 197
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 181 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 240
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 241 MNLFDLGGQYLRV 253
>gi|71897303|ref|NP_001026551.1| poly(U)-binding-splicing factor PUF60 [Gallus gallus]
gi|60098673|emb|CAH65167.1| hypothetical protein RCJMB04_5e8 [Gallus gallus]
Length = 366
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 244 MNLFDLGGQYLRV 256
>gi|410042304|ref|XP_003951412.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 530
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 161 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 213
Query: 166 K 166
K
Sbjct: 214 K 214
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 258 MNLFDLGGQYLRV 270
>gi|403302946|ref|XP_003942109.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 492
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 130 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 182
Query: 166 K 166
K
Sbjct: 183 K 183
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 167 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 226
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 227 MNLFDLGGQYLRV 239
>gi|444722723|gb|ELW63400.1| Poly(U)-binding-splicing factor PUF60 [Tupaia chinensis]
Length = 577
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 149 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 208
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 209 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 261
Query: 166 K 166
K
Sbjct: 262 K 262
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 246 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 305
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 306 MNLFDLGGQYLRV 318
>gi|114051121|ref|NP_001039598.1| poly(U)-binding-splicing factor PUF60 [Bos taurus]
gi|122144872|sp|Q2HJG2.1|PUF60_BOVIN RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor
gi|88682957|gb|AAI05448.1| Poly-U binding splicing factor 60KDa [Bos taurus]
Length = 530
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 161 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 213
Query: 166 K 166
K
Sbjct: 214 K 214
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 258 MNLFDLGGQYLRV 270
>gi|449495396|ref|XP_002188522.2| PREDICTED: poly(U)-binding-splicing factor PUF60 [Taeniopygia
guttata]
Length = 514
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 244 MNLFDLGGQYLRV 256
>gi|402794180|ref|NP_001258028.1| poly(U)-binding-splicing factor PUF60 isoform g [Homo sapiens]
gi|426360971|ref|XP_004047701.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Gorilla
gorilla gorilla]
gi|441648312|ref|XP_003280819.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1
[Nomascus leucogenys]
Length = 530
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 161 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 213
Query: 166 K 166
K
Sbjct: 214 K 214
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 258 MNLFDLGGQYLRV 270
>gi|395512680|ref|XP_003760563.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Sarcophilus
harrisii]
Length = 553
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 124 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 183
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 184 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 236
Query: 166 K 166
K
Sbjct: 237 K 237
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 221 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 280
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 281 MNLFDLGGQYLRV 293
>gi|355714554|gb|AES05042.1| poly-U binding splicing factor 60KDa [Mustela putorius furo]
Length = 314
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 191 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 228 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 287
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 288 MNLFDLGGQYLRV 300
>gi|326918217|ref|XP_003205387.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Meleagris
gallopavo]
Length = 516
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 244 MNLFDLGGQYLRV 256
>gi|50344898|ref|NP_001002121.1| poly(U)-binding-splicing factor PUF60-B [Danio rerio]
gi|47940403|gb|AAH71467.1| Poly-U binding splicing factor b [Danio rerio]
Length = 502
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRP ++ QAQ +I+++ EEA+ YNRIYVASIHPDL+++DI
Sbjct: 130 MNSVMLGGRNIK-------VGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDI 182
Query: 166 K 166
K
Sbjct: 183 K 183
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L +D I+ F FG IKS ++ +P T KHKGF F+EY+ P+++ ++
Sbjct: 167 RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSS 226
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 227 MNLFDLGGQYLRV 239
>gi|432911999|ref|XP_004078817.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oryzias
latipes]
Length = 523
Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 88/121 (72%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEMPEAAQLALEQ 160
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN V+LGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL++EDI
Sbjct: 161 MNSVVLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDEDI 213
Query: 166 K 166
K
Sbjct: 214 K 214
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L ++ I+ F FG IKS ++ +P T +HKG+ F+EYD P+++ ++
Sbjct: 198 RIYVASVHPDLSDEDIKSVFEAFGRIKSCMLAREPTTGRHKGYGFIEYDKPQSSLDAVAS 257
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 258 MNLFDLGGQYLRV 270
>gi|344236628|gb|EGV92731.1| Poly(U)-binding-splicing factor PUF60 [Cricetulus griseus]
Length = 271
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 130 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 182
Query: 166 K 166
K
Sbjct: 183 K 183
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 167 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 226
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 227 MNLFDLGGQYLRV 239
>gi|338728501|ref|XP_001496155.3| PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform 1
[Equus caballus]
Length = 499
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 130 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 182
Query: 166 K 166
K
Sbjct: 183 K 183
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 167 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 226
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 227 MNLFDLGGQYLRV 239
>gi|402794208|ref|NP_001258029.1| poly(U)-binding-splicing factor PUF60 isoform h [Homo sapiens]
gi|109087698|ref|XP_001087484.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Macaca
mulatta]
gi|332263566|ref|XP_003280822.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 4
[Nomascus leucogenys]
gi|16307289|gb|AAH09734.1| PUF60 protein [Homo sapiens]
gi|119602596|gb|EAW82190.1| fuse-binding protein-interacting repressor, isoform CRA_g [Homo
sapiens]
gi|261859062|dbj|BAI46053.1| poly-U binding splicing factor 60KDa [synthetic construct]
Length = 499
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 130 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 182
Query: 166 K 166
K
Sbjct: 183 K 183
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 167 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 226
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 227 MNLFDLGGQYLRV 239
>gi|73974710|ref|XP_857040.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 6 [Canis
lupus familiaris]
Length = 543
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 174 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 226
Query: 166 K 166
K
Sbjct: 227 K 227
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 211 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 270
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 271 MNLFDLGGQYLRV 283
>gi|410042306|ref|XP_003951413.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 499
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 130 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 182
Query: 166 K 166
K
Sbjct: 183 K 183
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 167 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 226
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 227 MNLFDLGGQYLRV 239
>gi|410042300|ref|XP_003951410.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 516
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 244 MNLFDLGGQYLRV 256
>gi|359321052|ref|XP_848710.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Canis
lupus familiaris]
Length = 560
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 191 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 228 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 287
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 288 MNLFDLGGQYLRV 300
>gi|338728499|ref|XP_003365686.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform 2
[Equus caballus]
Length = 516
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 244 MNLFDLGGQYLRV 256
>gi|257196186|ref|NP_001158072.1| poly(U)-binding-splicing factor PUF60 isoform c [Mus musculus]
gi|14714891|gb|AAH10601.1| Puf60 protein [Mus musculus]
Length = 499
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 130 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 182
Query: 166 K 166
K
Sbjct: 183 K 183
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 167 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 226
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 227 MNLFDLGGQYLRV 239
>gi|395860114|ref|XP_003802360.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2
[Otolemur garnettii]
Length = 542
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 173 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 225
Query: 166 K 166
K
Sbjct: 226 K 226
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 210 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 269
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 270 MNLFDLGGQYLRV 282
>gi|209862867|ref|NP_001129505.1| poly(U)-binding-splicing factor PUF60 isoform c [Homo sapiens]
gi|109087696|ref|XP_001087604.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 3 [Macaca
mulatta]
gi|441648305|ref|XP_004090875.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Nomascus
leucogenys]
gi|15030041|gb|AAH11265.1| PUF60 protein [Homo sapiens]
gi|15080471|gb|AAH11979.1| PUF60 protein [Homo sapiens]
gi|119602595|gb|EAW82189.1| fuse-binding protein-interacting repressor, isoform CRA_f [Homo
sapiens]
Length = 516
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 244 MNLFDLGGQYLRV 256
>gi|440911935|gb|ELR61552.1| Poly(U)-binding-splicing factor PUF60, partial [Bos grunniens
mutus]
Length = 561
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 125 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 184
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 185 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 237
Query: 166 K 166
K
Sbjct: 238 K 238
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 222 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 281
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 282 MNLFDLGGQYLRV 294
>gi|332831342|ref|XP_528257.3| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Pan
troglodytes]
Length = 559
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 190 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 242
Query: 166 K 166
K
Sbjct: 243 K 243
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 227 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 286
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 287 MNLFDLGGQYLRV 299
>gi|431908112|gb|ELK11715.1| Poly(U)-binding-splicing factor PUF60 [Pteropus alecto]
Length = 501
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 72 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 131
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 132 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 184
Query: 166 K 166
K
Sbjct: 185 K 185
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 169 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 228
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 229 MNLFDLGGQYLRV 241
>gi|417402731|gb|JAA48201.1| Putative polypyrimidine tract-binding protein puf60 rrm superfamily
[Desmodus rotundus]
Length = 558
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 189 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 241
Query: 166 K 166
K
Sbjct: 242 K 242
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 226 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 285
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 286 MNLFDLGGQYLRV 298
>gi|380810662|gb|AFE77206.1| poly(U)-binding-splicing factor PUF60 isoform a [Macaca mulatta]
gi|383416607|gb|AFH31517.1| poly(U)-binding-splicing factor PUF60 isoform a [Macaca mulatta]
Length = 560
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 191 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 228 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 287
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 288 MNLFDLGGQYLRV 300
>gi|197100546|ref|NP_001127017.1| poly(U)-binding-splicing factor PUF60 [Pongo abelii]
gi|75040908|sp|Q5R469.1|PUF60_PONAB RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor
gi|55733539|emb|CAH93447.1| hypothetical protein [Pongo abelii]
Length = 558
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 189 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 241
Query: 166 K 166
K
Sbjct: 242 K 242
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 226 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 285
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 286 MNLFDLGGQYLRV 298
>gi|17978512|ref|NP_510965.1| poly(U)-binding-splicing factor PUF60 isoform a [Homo sapiens]
gi|397497388|ref|XP_003819493.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Pan
paniscus]
gi|402879352|ref|XP_003903307.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Papio
anubis]
gi|441648299|ref|XP_004090873.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Nomascus
leucogenys]
gi|74761960|sp|Q9UHX1.1|PUF60_HUMAN RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor; AltName:
Full=FUSE-binding protein-interacting repressor;
Short=FBP-interacting repressor; AltName:
Full=Ro-binding protein 1; Short=RoBP1; AltName:
Full=Siah-binding protein 1; Short=Siah-BP1
gi|6684440|gb|AAF23589.1|AF114818_1 Ro ribonucleoprotein-binding protein 1 [Homo sapiens]
gi|48146403|emb|CAG33424.1| SIAHBP1 [Homo sapiens]
gi|119602593|gb|EAW82187.1| fuse-binding protein-interacting repressor, isoform CRA_d [Homo
sapiens]
gi|158258178|dbj|BAF85062.1| unnamed protein product [Homo sapiens]
gi|410220384|gb|JAA07411.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
gi|410303418|gb|JAA30309.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
Length = 559
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 190 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 242
Query: 166 K 166
K
Sbjct: 243 K 243
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 227 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 286
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 287 MNLFDLGGQYLRV 299
>gi|417402525|gb|JAA48108.1| Putative polypyrimidine tract-binding protein puf60 rrm superfamily
[Desmodus rotundus]
Length = 541
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 172 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 224
Query: 166 K 166
K
Sbjct: 225 K 225
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 209 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 268
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 269 MNLFDLGGQYLRV 281
>gi|297300233|ref|XP_001087975.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 6 [Macaca
mulatta]
Length = 559
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 190 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 242
Query: 166 K 166
K
Sbjct: 243 K 243
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 227 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 286
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 287 MNLFDLGGQYLRV 299
>gi|402794155|ref|NP_001258027.1| poly(U)-binding-splicing factor PUF60 isoform f [Homo sapiens]
gi|119602601|gb|EAW82195.1| fuse-binding protein-interacting repressor, isoform CRA_l [Homo
sapiens]
Length = 558
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 189 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 241
Query: 166 K 166
K
Sbjct: 242 K 242
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 226 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 285
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 286 MNLFDLGGQYLRV 298
>gi|281341440|gb|EFB17024.1| hypothetical protein PANDA_011097 [Ailuropoda melanoleuca]
Length = 512
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSVI 138
MN LGG+ ++V P + P +P A +V+
Sbjct: 244 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVV 282
>gi|395860112|ref|XP_003802359.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1
[Otolemur garnettii]
Length = 558
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 189 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 241
Query: 166 K 166
K
Sbjct: 242 K 242
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 226 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 285
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 286 MNLFDLGGQYLRV 298
>gi|1809248|gb|AAB41656.1| siah binding protein 1 [Homo sapiens]
Length = 541
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 172 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 224
Query: 166 K 166
K
Sbjct: 225 K 225
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 209 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 268
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 269 MNLFDLGGQYLRV 281
>gi|332831344|ref|XP_003312009.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Pan
troglodytes]
Length = 542
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 173 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 225
Query: 166 K 166
K
Sbjct: 226 K 226
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 210 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 269
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 270 MNLFDLGGQYLRV 282
>gi|6176532|gb|AAF05605.1|AF190744_1 poly-U binding splicing factor PUF60 [Homo sapiens]
Length = 556
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 127 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 186
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 187 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 239
Query: 166 K 166
K
Sbjct: 240 K 240
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 224 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 283
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 284 MNLFDLGGQYLRV 296
>gi|380810660|gb|AFE77205.1| poly(U)-binding-splicing factor PUF60 isoform b [Macaca mulatta]
gi|383416605|gb|AFH31516.1| poly(U)-binding-splicing factor PUF60 isoform b [Macaca mulatta]
Length = 543
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 174 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 226
Query: 166 K 166
K
Sbjct: 227 K 227
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 211 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 270
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 271 MNLFDLGGQYLRV 283
>gi|17298690|ref|NP_055096.2| poly(U)-binding-splicing factor PUF60 isoform b [Homo sapiens]
gi|397497390|ref|XP_003819494.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Pan
paniscus]
gi|402879354|ref|XP_003903308.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Papio
anubis]
gi|441648302|ref|XP_004090874.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Nomascus
leucogenys]
gi|17152040|gb|AAF27522.2|AF217197_1 FBP-interacting repressor [Homo sapiens]
gi|14250810|gb|AAH08875.1| Poly-U binding splicing factor 60KDa [Homo sapiens]
gi|119602594|gb|EAW82188.1| fuse-binding protein-interacting repressor, isoform CRA_e [Homo
sapiens]
gi|410220382|gb|JAA07410.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
gi|410303416|gb|JAA30308.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
Length = 542
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 173 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 225
Query: 166 K 166
K
Sbjct: 226 K 226
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 210 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 269
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 270 MNLFDLGGQYLRV 282
>gi|390475872|ref|XP_002759200.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1
[Callithrix jacchus]
Length = 563
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 134 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 193
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 194 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 246
Query: 166 K 166
K
Sbjct: 247 K 247
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 231 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 290
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 291 MNLFDLGGQYLRV 303
>gi|326514938|dbj|BAJ99830.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 638
Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 106/121 (87%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+GSI+FEL E ++QAF PFGP+K++++++DP+T +HKGFAF+EY+IPEAAQLS+EQ
Sbjct: 128 RIYIGSINFELNEAMLKQAFQPFGPVKAVSLTFDPVTNRHKGFAFLEYEIPEAAQLSIEQ 187
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV+LGGRNIK VGRPSNMPQAQ +ID++TEEAK YNRIY+ASIHPDLTE DI
Sbjct: 188 MNGVILGGRNIK-------VGRPSNMPQAQPIIDQLTEEAKNYNRIYIASIHPDLTETDI 240
Query: 166 K 166
+
Sbjct: 241 Q 241
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ SI +L E I+ F FG IKS ++ D T KHKG+ F+EY +AAQ ++
Sbjct: 225 RIYIASIHPDLTETDIQSVFEAFGEIKSCVLAKDTATSKHKGYGFIEYGTVQAAQDAISA 284
Query: 106 MNGVMLGGRNIKV 118
MN LGG++++V
Sbjct: 285 MNLFDLGGQHLRV 297
>gi|297300235|ref|XP_001087851.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 5 [Macaca
mulatta]
Length = 542
Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 173 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 225
Query: 166 K 166
K
Sbjct: 226 K 226
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 210 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 269
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 270 MNLFDLGGQYLRV 282
>gi|402794118|ref|NP_001258025.1| poly(U)-binding-splicing factor PUF60 isoform d [Homo sapiens]
gi|119602600|gb|EAW82194.1| fuse-binding protein-interacting repressor, isoform CRA_k [Homo
sapiens]
Length = 541
Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 172 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 224
Query: 166 K 166
K
Sbjct: 225 K 225
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 209 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 268
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 269 MNLFDLGGQYLRV 281
>gi|300798352|ref|NP_001178809.1| poly(U)-binding-splicing factor PUF60 [Rattus norvegicus]
Length = 563
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 134 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 193
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 194 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 246
Query: 166 K 166
K
Sbjct: 247 K 247
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 231 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 290
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 291 MNLFDLGGQYLRV 303
>gi|257196183|ref|NP_082640.2| poly(U)-binding-splicing factor PUF60 isoform a [Mus musculus]
gi|158563798|sp|Q3UEB3.2|PUF60_MOUSE RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor
gi|158563997|sp|Q9WV25.2|PUF60_RAT RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor; AltName:
Full=RNA-binding protein Siah-BP; AltName:
Full=Siah-binding protein 1
gi|148697573|gb|EDL29520.1| RIKEN cDNA 2410104I19, isoform CRA_a [Mus musculus]
gi|149066142|gb|EDM16015.1| siah binding protein 1; FBP interacting repressor; pyrimidine tract
binding splicing factor; Ro ribonucleoprotein-binding
protein 1, isoform CRA_a [Rattus norvegicus]
Length = 564
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 195 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 247
Query: 166 K 166
K
Sbjct: 248 K 248
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 292 MNLFDLGGQYLRV 304
>gi|76677895|ref|NP_598452.2| poly(U)-binding-splicing factor PUF60 isoform b [Mus musculus]
gi|74195824|dbj|BAE30474.1| unnamed protein product [Mus musculus]
gi|74221976|dbj|BAE40622.1| unnamed protein product [Mus musculus]
gi|148697574|gb|EDL29521.1| RIKEN cDNA 2410104I19, isoform CRA_b [Mus musculus]
gi|149066143|gb|EDM16016.1| siah binding protein 1; FBP interacting repressor; pyrimidine tract
binding splicing factor; Ro ribonucleoprotein-binding
protein 1, isoform CRA_b [Rattus norvegicus]
Length = 547
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 118 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 177
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 178 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 230
Query: 166 K 166
K
Sbjct: 231 K 231
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 215 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 274
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 275 MNLFDLGGQYLRV 287
>gi|148697575|gb|EDL29522.1| RIKEN cDNA 2410104I19, isoform CRA_c [Mus musculus]
Length = 546
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 117 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 176
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 177 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 229
Query: 166 K 166
K
Sbjct: 230 K 230
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 214 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 273
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 274 MNLFDLGGQYLRV 286
>gi|351698432|gb|EHB01351.1| Poly(U)-binding-splicing factor PUF60, partial [Heterocephalus
glaber]
Length = 556
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 127 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 186
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 187 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 239
Query: 166 K 166
K
Sbjct: 240 K 240
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 224 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 283
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 284 MNLFDLGGQYLRV 296
>gi|5524727|gb|AAD44358.1|AF165892_1 RNA-binding protein SiahBP [Rattus norvegicus]
Length = 565
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 136 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 195
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 196 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 248
Query: 166 K 166
K
Sbjct: 249 K 249
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 233 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 292
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 293 MNLFDLGGQYLRV 305
>gi|148697576|gb|EDL29523.1| RIKEN cDNA 2410104I19, isoform CRA_d [Mus musculus]
Length = 553
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 124 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 183
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 184 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 236
Query: 166 K 166
K
Sbjct: 237 K 237
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 221 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 280
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 281 MNLFDLGGQYLRV 293
>gi|410987958|ref|XP_004000259.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Felis catus]
Length = 502
Score = 187 bits (476), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 73 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 132
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 133 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 185
Query: 166 K 166
K
Sbjct: 186 K 186
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 170 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 229
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 230 MNLFDLGGQYLRV 242
>gi|224156534|ref|XP_002199861.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like, partial
[Taeniopygia guttata]
Length = 156
Score = 187 bits (476), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 73
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 74 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 126
Query: 166 K 166
K
Sbjct: 127 K 127
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFV 91
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+
Sbjct: 111 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFI 156
>gi|303324711|pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
gi|303324712|pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 15 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 74
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 75 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 127
Query: 166 K 166
K
Sbjct: 128 K 128
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 112 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 171
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 172 MNLFDLGGQYLRV 184
>gi|355698276|gb|EHH28824.1| 60 kDa poly(U)-binding-splicing factor [Macaca mulatta]
Length = 568
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 139 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 198
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 199 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 251
Query: 166 K 166
K
Sbjct: 252 K 252
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 236 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 295
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 296 MNLFDLGGQYLRV 308
>gi|354491098|ref|XP_003507693.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Cricetulus
griseus]
Length = 582
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 153 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 212
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 213 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 265
Query: 166 K 166
K
Sbjct: 266 K 266
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 250 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 309
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 310 MNLFDLGGQYLRV 322
>gi|126323028|ref|XP_001370705.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Monodelphis
domestica]
Length = 637
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 208 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 267
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 268 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 320
Query: 166 K 166
K
Sbjct: 321 K 321
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 305 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 364
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 365 MNLFDLGGQYLRV 377
>gi|335310331|ref|XP_003361983.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Sus scrofa]
Length = 362
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 73
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 74 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 126
Query: 166 K 166
K
Sbjct: 127 K 127
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 111 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 170
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 171 MNLFDLGGQYLRV 183
>gi|301773444|ref|XP_002922145.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60-like [Ailuropoda melanoleuca]
Length = 577
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 139 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 198
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 199 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 251
Query: 166 K 166
K
Sbjct: 252 K 252
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 236 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 295
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 296 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 333
>gi|111185612|gb|AAI19438.1| Puf60 protein [Mus musculus]
gi|152060991|gb|AAI48275.1| Puf60 protein [Mus musculus]
Length = 241
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 44 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 103
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 104 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 156
Query: 166 K 166
K
Sbjct: 157 K 157
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 141 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 200
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSVI 138
MN LGG+ ++V P + P +P A +V+
Sbjct: 201 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVV 239
>gi|355780002|gb|EHH64478.1| 60 kDa poly(U)-binding-splicing factor [Macaca fascicularis]
Length = 521
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 173 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 225
Query: 166 K 166
K
Sbjct: 226 K 226
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 210 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 269
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 270 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 307
>gi|345315810|ref|XP_001511498.2| PREDICTED: poly(U)-binding-splicing factor PUF60-like
[Ornithorhynchus anatinus]
Length = 499
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 161 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 213
Query: 166 K 166
K
Sbjct: 214 K 214
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 239
>gi|74203983|dbj|BAE28998.1| unnamed protein product [Mus musculus]
Length = 564
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 102/121 (84%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVY GSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 135 RVYAGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 195 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 247
Query: 166 K 166
K
Sbjct: 248 K 248
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 292 MNLFDLGGQYLRV 304
>gi|348555826|ref|XP_003463724.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60-like [Cavia porcellus]
Length = 564
Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 132 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 191
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 192 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 244
Query: 166 K 166
K
Sbjct: 245 K 245
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 229 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 288
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 289 MNLFDLGGQYLRV 301
>gi|410925539|ref|XP_003976238.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Takifugu
rubripes]
Length = 506
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 86/121 (71%), Positives = 104/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MS+D +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSFDSVTMKHKGFAFVEYEMPEAAQLALEQ 152
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN V+LGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DI
Sbjct: 153 MNSVVLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDI 205
Query: 166 K 166
K
Sbjct: 206 K 206
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ +P T +HKG+ FVEYD ++AQ ++
Sbjct: 190 RIYVASVHPDLSDDDIKSVFEAFGRIKSCLLAREPTTGRHKGYGFVEYDKAQSAQDAVAS 249
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 250 MNLFDLGGQYLRV 262
>gi|156398787|ref|XP_001638369.1| predicted protein [Nematostella vectensis]
gi|156225489|gb|EDO46306.1| predicted protein [Nematostella vectensis]
Length = 504
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 100/121 (82%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI+FEL+E+ IR AF PFGPI I++SWDP+ KHKGFAFVEYD+PEAAQL+LEQ
Sbjct: 65 RVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQ 124
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV+LGGRNIK VGRPSN+PQA +I++ +EAK Y RIY+AS+HPDL E+DI
Sbjct: 125 MNGVLLGGRNIK-------VGRPSNVPQAAPLIEQFEQEAKKYARIYIASVHPDLLEDDI 177
Query: 166 K 166
K
Sbjct: 178 K 178
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ S+ +L ED I+ F FG + ++S +P+T KHKG+ F+EY+ ++A ++
Sbjct: 162 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 221
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 222 MNLFDLGGQFLRV 234
>gi|196009954|ref|XP_002114842.1| hypothetical protein TRIADDRAFT_64128 [Trichoplax adhaerens]
gi|190582904|gb|EDV22976.1| hypothetical protein TRIADDRAFT_64128 [Trichoplax adhaerens]
Length = 620
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISF+L+ED I+Q F PFGPIK+IN+SWD +T KHKGFAF+E++ PEAAQL+LEQ
Sbjct: 167 RIYVGSISFDLREDHIKQTFSPFGPIKNINLSWDTVTMKHKGFAFIEFETPEAAQLALEQ 226
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRP+ MPQA +I +I EEAK Y RIYVAS+HPDL+E DI
Sbjct: 227 MNGQLMGGRNIK-------VGRPTQMPQAGPLIQQIEEEAKNYARIYVASVHPDLSESDI 279
Query: 166 K 166
K
Sbjct: 280 K 280
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 31 QVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
Q GP+ + + R+YV S+ +L E I+ F FG IKS M D IT KH+G+
Sbjct: 247 QAGPLIQQIEEEAKNYARIYVASVHPDLSESDIKSVFEAFGKIKSCTMPLDNITGKHRGY 306
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
++E D ++A ++ MN LGG+ ++V
Sbjct: 307 CYIELDGLQSAMDAIASMNMFDLGGQYLRV 336
>gi|371927697|pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 100/121 (82%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+ SWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQ 73
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
N V LGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 74 XNSVXLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 126
Query: 166 K 166
K
Sbjct: 127 K 127
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 111 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 170
Query: 106 MNGVMLGGRNIKV 118
N LGG+ ++V
Sbjct: 171 XNLFDLGGQYLRV 183
>gi|393909310|gb|EFO18950.2| Poly(U)-binding-splicing factor half pint [Loa loa]
Length = 769
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/121 (66%), Positives = 102/121 (84%), Gaps = 3/121 (2%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVY+GSISFE++E+ I+ AF FGPIKSINMSWD +T HKGFAF+EY+IPEAA L+ E
Sbjct: 127 RVYIGSISFEVREEMIKNAFGVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLAQES 186
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV++GGRN+KV +V VGRPSNMPQAQ +I+ + +EAK Y+R+YVAS+HPDL+E D+
Sbjct: 187 MNGVLMGGRNLKV---NVLVGRPSNMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDL 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP---ITQKHKGFAFVEYDIPEAAQLS 102
RVYV S+ +L E ++ F FG + ++ H+GF ++E+ ++A +
Sbjct: 228 RVYVASVHPDLSESDLKSVFEAFGEVTKCQLARATGPNAGSGHRGFGYLEFSNAQSANEA 287
Query: 103 LEQMNGVMLGGRNIKV 118
+ MN LGG+ ++V
Sbjct: 288 IAGMNMFDLGGQYLRV 303
>gi|324503561|gb|ADY41546.1| Poly(U)-binding-splicing factor half pint [Ascaris suum]
Length = 832
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/121 (65%), Positives = 102/121 (84%), Gaps = 3/121 (2%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVY+GSISFE++E+ I+ +F FGPIKSINMSWD +T HKGFAF+EY+IPEAA L+ E
Sbjct: 155 RVYIGSISFEVREEMIKNSFSVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLAQES 214
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV++GGRN+KV +V VGRPSNMPQAQ +I+ + +EAK Y+R+YVAS+HPDL+E D+
Sbjct: 215 MNGVLMGGRNLKV---NVLVGRPSNMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDL 271
Query: 166 K 166
K
Sbjct: 272 K 272
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP---ITQKHKGFAFVEYDIPEAAQLS 102
RVYV S+ +L E ++ F FG + ++ H+GF ++E+ +A +
Sbjct: 256 RVYVASVHPDLSESDLKSVFEAFGEVTKCQLARATGPNAGSGHRGFGYIEFGNAASAAEA 315
Query: 103 LEQMNGVMLGGRNIKV 118
+ MN LGG+ ++V
Sbjct: 316 IAGMNMFDLGGQYLRV 331
>gi|170595691|ref|XP_001902483.1| Rnp [Brugia malayi]
gi|158589826|gb|EDP28670.1| Rnp, putative [Brugia malayi]
Length = 636
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 78/121 (64%), Positives = 99/121 (81%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVY+GSISFE++E+ I+ AF FGPIKSINMSWD +T HKGFAF+EY+IPEAA L+ E
Sbjct: 127 RVYIGSISFEVREEMIKNAFGVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLAQES 186
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV++GGRN+K VGRPSNMPQAQ +I+ + +EAK Y+R+YVAS+HPDL+E D+
Sbjct: 187 MNGVLMGGRNLK-------VGRPSNMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDL 239
Query: 166 K 166
K
Sbjct: 240 K 240
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP---ITQKHKGFAFVEYDIPEAAQLS 102
RVYV S+ +L E ++ F FG + ++ H+GF ++E+ ++A +
Sbjct: 224 RVYVASVHPDLSESDLKSVFEAFGEVTKCQLARATGPNAGSGHRGFGYLEFSNAQSANEA 283
Query: 103 LEQMNGVMLGGRNIKV 118
+ MN LGG+ ++V
Sbjct: 284 IAGMNMFDLGGQYLRV 299
>gi|312086552|ref|XP_003145121.1| Poly(U)-binding-splicing factor half pint [Loa loa]
gi|393909311|gb|EJD75402.1| Poly(U)-binding-splicing factor half pint, variant [Loa loa]
Length = 765
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/121 (64%), Positives = 99/121 (81%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVY+GSISFE++E+ I+ AF FGPIKSINMSWD +T HKGFAF+EY+IPEAA L+ E
Sbjct: 127 RVYIGSISFEVREEMIKNAFGVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLAQES 186
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV++GGRN+K VGRPSNMPQAQ +I+ + +EAK Y+R+YVAS+HPDL+E D+
Sbjct: 187 MNGVLMGGRNLK-------VGRPSNMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDL 239
Query: 166 K 166
K
Sbjct: 240 K 240
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP---ITQKHKGFAFVEYDIPEAAQLS 102
RVYV S+ +L E ++ F FG + ++ H+GF ++E+ ++A +
Sbjct: 224 RVYVASVHPDLSESDLKSVFEAFGEVTKCQLARATGPNAGSGHRGFGYLEFSNAQSANEA 283
Query: 103 LEQMNGVMLGGRNIKV 118
+ MN LGG+ ++V
Sbjct: 284 IAGMNMFDLGGQYLRV 299
>gi|449667931|ref|XP_002156035.2| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Hydra
magnipapillata]
Length = 597
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/121 (65%), Positives = 99/121 (81%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R Y+GSI+F+L E+++R +FLPFGPIK I++SWD T KHKGFAFVEY+IPEAAQL+LEQ
Sbjct: 140 RTYIGSINFQLNEESVRASFLPFGPIKMIDLSWDSATMKHKGFAFVEYEIPEAAQLALEQ 199
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN V++GGRNIK VGRPSN+PQA I++I +EA+ Y RIYV+SIHPDL+E DI
Sbjct: 200 MNNVLMGGRNIK-------VGRPSNVPQAAPWIEQILQEARQYARIYVSSIHPDLSESDI 252
Query: 166 K 166
K
Sbjct: 253 K 253
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E I+ F FG I S ++ D +T KHKG+ F+EY +A ++
Sbjct: 237 RIYVSSIHPDLSESDIKSVFEAFGEILSCKLAPDQLTGKHKGYGFIEYANQSSANDAIVA 296
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ I+V
Sbjct: 297 MNLFDLGGQYIRV 309
>gi|391343712|ref|XP_003746150.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Metaseiulus
occidentalis]
Length = 562
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/120 (65%), Positives = 99/120 (82%), Gaps = 7/120 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFELKED +R AF PFGP+K+INMS+D IT +HKGFAFVE+++PEAAQL+LEQ
Sbjct: 120 RIYVGSISFELKEDAVRTAFKPFGPVKAINMSYDTITSRHKGFAFVEFELPEAAQLALEQ 179
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV +GGRNIK VGRPSNMPQA ++++I EE+K RIY+ASIH DL++ D+
Sbjct: 180 MNGVFMGGRNIK-------VGRPSNMPQAAPILEQIMEESKSSPRIYIASIHQDLSDADV 232
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 28 DLKQVGPITPDV--NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMS-WDPITQK 84
++ Q PI + S S R+Y+ SI +L + + F FG IKS ++ +K
Sbjct: 197 NMPQAAPILEQIMEESKSSPRIYIASIHQDLSDADVHSVFEAFGKIKSCKLAPGMTAAEK 256
Query: 85 HKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
H+ F F+EY+ +AA ++ MN LGG+ ++V
Sbjct: 257 HREFGFIEYETSQAAADAIASMNMFDLGGQLVRV 290
>gi|339244819|ref|XP_003378335.1| poly(U)-binding-splicing factor half pint [Trichinella spiralis]
gi|316972769|gb|EFV56420.1| poly(U)-binding-splicing factor half pint [Trichinella spiralis]
Length = 609
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 96/114 (84%), Gaps = 7/114 (6%)
Query: 53 SFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG 112
SFEL+E+T++ AF FGPIKSINMSWDPIT HKGFAF+EY++PEAA L+ +QMNGV++G
Sbjct: 125 SFELREETVKGAFQVFGPIKSINMSWDPITGHHKGFAFLEYEVPEAATLAQDQMNGVLIG 184
Query: 113 GRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
GRNIK VGRPSNMPQAQ +I+ I EEAKL++RIYV+SIHPDLTE D+K
Sbjct: 185 GRNIK-------VGRPSNMPQAQPIIESIIEEAKLHHRIYVSSIHPDLTESDVK 231
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 28 DLKQVGPITPDVNSNSPL--RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI + + L R+YV SI +L E ++ F FG I ++++ + KH
Sbjct: 195 NMPQAQPIIESIIEEAKLHHRIYVSSIHPDLTESDVKSVFEAFGNIINVDLPKGQLHGKH 254
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVI 138
KG+A++++D +AA ++ MN LGG+ ++ VGR P AQ I
Sbjct: 255 KGYAYIDFDSAKAALDAVSSMNMFDLGGQLLR-------VGRAITPPMAQQFI 300
>gi|17510025|ref|NP_491176.1| Protein RNP-6, isoform b [Caenorhabditis elegans]
gi|373220165|emb|CCD72565.1| Protein RNP-6, isoform b [Caenorhabditis elegans]
Length = 749
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 98/122 (80%), Gaps = 1/122 (0%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE++ED +R+AF PFGPIKSINMSWDP T HK FAFVEY++PEAA L+ E
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 106 MNGVMLGGRNIKVHFPHVQVGR-PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
MNG MLGGRN+KV+ Q R P NMPQAQ +ID + ++AK Y R+YV+S+HPDL+E D
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETD 222
Query: 165 IK 166
+K
Sbjct: 223 LK 224
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 28 DLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI V ++ RVYV S+ +L E ++ F FG I ++ P + H
Sbjct: 188 NMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGH 247
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+GF ++E++ + ++ MN LGG+ ++V
Sbjct: 248 RGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRV 280
>gi|17510027|ref|NP_491177.1| Protein RNP-6, isoform a [Caenorhabditis elegans]
gi|373220164|emb|CCD72564.1| Protein RNP-6, isoform a [Caenorhabditis elegans]
Length = 339
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 98/122 (80%), Gaps = 1/122 (0%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE++ED +R+AF PFGPIKSINMSWDP T HK FAFVEY++PEAA L+ E
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 106 MNGVMLGGRNIKVHFPHVQVGR-PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
MNG MLGGRN+KV+ Q R P NMPQAQ +ID + ++AK Y R+YV+S+HPDL+E D
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETD 222
Query: 165 IK 166
+K
Sbjct: 223 LK 224
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 28 DLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI V ++ RVYV S+ +L E ++ F FG I ++ P + H
Sbjct: 188 NMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGH 247
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+GF ++E++ + ++ MN LGG+ ++V
Sbjct: 248 RGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRV 280
>gi|25141353|ref|NP_740829.1| Protein RNP-6, isoform c [Caenorhabditis elegans]
gi|373220166|emb|CCD72566.1| Protein RNP-6, isoform c [Caenorhabditis elegans]
Length = 346
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 98/122 (80%), Gaps = 1/122 (0%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE++ED +R+AF PFGPIKSINMSWDP T HK FAFVEY++PEAA L+ E
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 106 MNGVMLGGRNIKVHFPHVQVGR-PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
MNG MLGGRN+KV+ Q R P NMPQAQ +ID + ++AK Y R+YV+S+HPDL+E D
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETD 222
Query: 165 IK 166
+K
Sbjct: 223 LK 224
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 28 DLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI V ++ RVYV S+ +L E ++ F FG I ++ P + H
Sbjct: 188 NMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGH 247
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117
+GF ++E++ + ++ MN LGG+ ++
Sbjct: 248 RGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLR 279
>gi|341882558|gb|EGT38493.1| hypothetical protein CAEBREN_09163 [Caenorhabditis brenneri]
Length = 757
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE++ED +R+AF PFGPIKSINMSWDP T HK FAFVEY+IPEAA L+ E
Sbjct: 103 RIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGHHKTFAFVEYEIPEAALLAQES 162
Query: 106 MNGVMLGGRNIKVHFPHVQVGR-PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
MNG MLGGRN+KV+ Q R P NMPQAQ +ID + ++AK Y R+YVAS+HPDL+E +
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVASVHPDLSESE 222
Query: 165 I 165
+
Sbjct: 223 L 223
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 28 DLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI V ++ RVYV S+ +L E + F FG I ++ P + H
Sbjct: 188 NMPQAQPIIDMVQKDAKKYFRVYVASVHPDLSESELAGVFEAFGQIIKCQLARTPTGRGH 247
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+GF ++E++ + ++ MN LGG+ ++V
Sbjct: 248 RGFGYIEFNNVTSQNEAIAGMNMFDLGGQYLRV 280
>gi|341895702|gb|EGT51637.1| CBN-RNP-6 protein [Caenorhabditis brenneri]
Length = 757
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE++ED +R+AF PFGPIKSINMSWDP T HK FAFVEY+IPEAA L+ E
Sbjct: 103 RIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGHHKTFAFVEYEIPEAALLAQES 162
Query: 106 MNGVMLGGRNIKVHFPHVQVGR-PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
MNG MLGGRN+KV+ Q R P NMPQAQ +ID + ++AK Y R+YVAS+HPDL+E +
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVASVHPDLSESE 222
Query: 165 I 165
+
Sbjct: 223 L 223
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 28 DLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI V ++ RVYV S+ +L E + F FG I ++ P + H
Sbjct: 188 NMPQAQPIIDMVQKDAKKYFRVYVASVHPDLSESELAGVFEAFGQIIKCQLARTPTGRGH 247
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+GF ++E++ + ++ MN LGG+ ++V
Sbjct: 248 RGFGYIEFNNVTSQNEAIAGMNMFDLGGQYLRV 280
>gi|268564468|ref|XP_002639117.1| C. briggsae CBR-RNP-6 protein [Caenorhabditis briggsae]
Length = 744
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE++ED +R+AF PFGPIKSINMSWDP T HK FAFVEY+IPEAA L+ E
Sbjct: 103 RIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGHHKTFAFVEYEIPEAALLAQES 162
Query: 106 MNGVMLGGRNIKVHFPHVQVGR-PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
MNG MLGGRN+KV+ Q R P NMPQAQ +ID + ++AK Y R+YVAS+HPDL+E +
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVASVHPDLSESE 222
Query: 165 I 165
+
Sbjct: 223 L 223
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
RVYV S+ +L E + F FG I ++ P + H+GF ++E++ + ++
Sbjct: 207 FRVYVASVHPDLSESELAGVFEAFGQIIKCQLARTPTGRGHRGFGYIEFNNMNSQNEAIA 266
Query: 105 QMNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 267 GMNMFDLGGQYLRV 280
>gi|198424504|ref|XP_002131946.1| PREDICTED: similar to poly-U binding splicing factor 60KDa [Ciona
intestinalis]
Length = 491
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI ++LKE+ IR AF PFGP KSINMS+DPIT KHKGFAF+EY+ PEAAQLSL+Q
Sbjct: 99 RVYVGSIYYDLKEEIIRNAFSPFGPFKSINMSFDPITGKHKGFAFIEYETPEAAQLSLDQ 158
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
M GVMLGGR+IK VGRP+NMPQ+ VID + +E+K+ RIY++S+H DL ED+
Sbjct: 159 MGGVMLGGRSIK-------VGRPANMPQSHPVIDLLLDESKMQKRIYISSVHTDLNTEDL 211
Query: 166 K 166
K
Sbjct: 212 K 212
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+ S+ +L + ++ F FG I S + D +T KHKG+ F+EYD +AA ++
Sbjct: 196 RIYISSVHTDLNTEDLKSVFSAFGNILSCALVPDVLTGKHKGYGFIEYDTLQAANDAVAS 255
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 256 MNLFDLGGQYLRV 268
>gi|256072869|ref|XP_002572756.1| fuse-binding protein-interacting repressor siahbp1 [Schistosoma
mansoni]
Length = 520
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 96/120 (80%), Gaps = 7/120 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI++++KED+++Q F PFGPIKS+N+SWDP TQKHKGFAF+E++ PEAAQL+++Q
Sbjct: 96 RVYVGSIAYDVKEDSLKQVFSPFGPIKSVNLSWDPSTQKHKGFAFLEFEYPEAAQLAIDQ 155
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG GGR +K VGRPSN+ A+ VI+E+ E L+NRIYVA IH DLTE+D+
Sbjct: 156 MNGTSFGGRQLK-------VGRPSNLTNAEPVINELVNEHNLHNRIYVAGIHLDLTEDDV 208
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT-QKHKGFAFVEYDIPEAAQLSLE 104
R+YV I +L ED + F FG I + DP +H+GF ++EY+ ++A ++
Sbjct: 193 RIYVAGIHLDLTEDDVSLVFEAFGKIVFCKLQPDPTRPMRHRGFGYIEYESTQSAADAVG 252
Query: 105 QMNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 253 SMNQFNLGGQLLRV 266
>gi|353229125|emb|CCD75296.1| putative fuse-binding protein-interacting repressor siahbp1
[Schistosoma mansoni]
Length = 520
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 96/120 (80%), Gaps = 7/120 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI++++KED+++Q F PFGPIKS+N+SWDP TQKHKGFAF+E++ PEAAQL+++Q
Sbjct: 96 RVYVGSIAYDVKEDSLKQVFSPFGPIKSVNLSWDPSTQKHKGFAFLEFEYPEAAQLAIDQ 155
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG GGR +K VGRPSN+ A+ VI+E+ E L+NRIYVA IH DLTE+D+
Sbjct: 156 MNGTSFGGRQLK-------VGRPSNLTNAEPVINELVNEHNLHNRIYVAGIHLDLTEDDV 208
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT-QKHKGFAFVEYDIPEAAQLSLE 104
R+YV I +L ED + F FG I + DP +H+GF ++EY+ ++A ++
Sbjct: 193 RIYVAGIHLDLTEDDVSLVFEAFGKIVFCKLQPDPTRPMRHRGFGYIEYESTQSAADAVG 252
Query: 105 QMNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 253 SMNQFNLGGQLLRV 266
>gi|308505212|ref|XP_003114789.1| CRE-RNP-6 protein [Caenorhabditis remanei]
gi|308258971|gb|EFP02924.1| CRE-RNP-6 protein [Caenorhabditis remanei]
Length = 817
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 98/136 (72%), Gaps = 16/136 (11%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT---------------QKHKGFAF 90
R+YVGSISFE++ED +R+AF PFGPIKSINMSWDP T Q HK FAF
Sbjct: 133 RIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGVSCDRCLNISISSFQHHKTFAF 192
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGR-PSNMPQAQSVIDEITEEAKLYN 149
VEY+IPEAA L+ E MNG MLGGRN+KV+ Q R P NMPQAQ +ID + ++AK Y
Sbjct: 193 VEYEIPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYF 252
Query: 150 RIYVASIHPDLTEEDI 165
R+YVAS+HPDL+E ++
Sbjct: 253 RVYVASVHPDLSESEL 268
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 28 DLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI V ++ RVYV S+ +L E + F FG I ++ P + H
Sbjct: 233 NMPQAQPIIDMVQKDAKKYFRVYVASVHPDLSESELGGVFEAFGQIIKCQLARTPTGRGH 292
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+GF ++E++ + ++ MN LGG+ ++V
Sbjct: 293 RGFGYIEFNNVNSQNEAIAGMNMFDLGGQYLRV 325
>gi|358335955|dbj|GAA54545.1| poly(U)-binding-splicing factor PUF60 [Clonorchis sinensis]
Length = 511
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 94/120 (78%), Gaps = 7/120 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSIS++LKED+I+ AF PFGPI+++ MSWD TQKHKGFAF+E++ PEAA L++EQ
Sbjct: 77 RIYVGSISYDLKEDSIKTAFQPFGPIRTVTMSWDAATQKHKGFAFIEFEFPEAAHLAVEQ 136
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN LGGR +K VGRPSN+PQA +I+E+ E KL ++YVA +HPDL+E+D+
Sbjct: 137 MNNASLGGRQLK-------VGRPSNLPQADPLINELVTEYKLEKKVYVAGVHPDLSEDDL 189
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 28 DLKQVGPITPDVNSNSPL--RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPI-TQK 84
+L Q P+ ++ + L +VYV + +L ED + F FG I S + DP QK
Sbjct: 154 NLPQADPLINELVTEYKLEKKVYVAGVHPDLSEDDLALVFEAFGKITSCKLHVDPTKAQK 213
Query: 85 HKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
H+GF ++EY+ +AA ++ MN LGG+ ++V
Sbjct: 214 HRGFGYIEYESEQAANDAVASMNMFDLGGQFLRV 247
>gi|358334696|dbj|GAA40294.2| poly(U)-binding-splicing factor PUF60, partial [Clonorchis
sinensis]
Length = 519
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 95/120 (79%), Gaps = 7/120 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI++++KED+++Q+F PFGP+K+++MSWDP TQKHKGFAF+E++ PEAAQL+++Q
Sbjct: 100 RVYVGSIAYDVKEDSLKQSFSPFGPLKTVSMSWDPATQKHKGFAFLEFEYPEAAQLAIDQ 159
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN GGR +K VGRPSN+ A +VI E+ E KL NRIYV+ IH DLTE+DI
Sbjct: 160 MNNASFGGRQLK-------VGRPSNLTNADTVIAELVAEYKLENRIYVSGIHVDLTEDDI 212
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP-ITQKHKGFAFVEYDIPEAAQLSLE 104
R+YV I +L ED I F FG I + DP T++H+GF ++EY ++A ++
Sbjct: 197 RIYVSGIHVDLTEDDISLVFEAFGKIVFCRLVVDPESTERHRGFGYIEYQNSQSAADAVA 256
Query: 105 QMNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 257 SMNQFNLGGQLLRV 270
>gi|226467496|emb|CAX69624.1| Poly U-binding-splicing factor half pint [Schistosoma japonicum]
Length = 411
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 91/121 (75%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE+ E+ IR+ F PFGPIKS+ +SWD + QKHKGFAFVE+++PEAA L+LEQ
Sbjct: 94 RIYVGSISFEIGEEEIRKTFSPFGPIKSVALSWDTVLQKHKGFAFVEFEVPEAASLALEQ 153
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG L GRN+K VGRPSN PQ ++ E+ E+ R+Y+AS+HP+LTE DI
Sbjct: 154 MNGYTLAGRNLK-------VGRPSNAPQTAALEAELRAESSTKPRVYIASVHPELTESDI 206
Query: 166 K 166
+
Sbjct: 207 Q 207
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP-ITQKHKGFAFVEYDIPEAAQLSLE 104
RVY+ S+ EL E I+ F FG + S ++ DP +H+GF +++++ EAA ++
Sbjct: 191 RVYIASVHPELTESDIQTVFEAFGKVNSCSLYPDPKCPGRHRGFGYIDFESEEAAIAAVS 250
Query: 105 QMNGVMLGGRNIKV 118
MN L G+ ++V
Sbjct: 251 SMNCFDLAGQQLRV 264
>gi|340384945|ref|XP_003390971.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like, partial
[Amphimedon queenslandica]
Length = 342
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 91/121 (75%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+GSI+FEL E+ +R AF PFG IK+INMSWD T KHKG+AFVE++ EAAQL+LEQ
Sbjct: 95 RIYIGSINFELGEEAVRVAFSPFGTIKTINMSWDSATMKHKGYAFVEFETAEAAQLALEQ 154
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
M GV++GGRNIK VGRP+N+PQA +I I E A RIYVASIH DL+ +D+
Sbjct: 155 MTGVIIGGRNIK-------VGRPNNVPQAAPIIASIQESAAKLPRIYVASIHKDLSAKDV 207
Query: 166 K 166
K
Sbjct: 208 K 208
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 28 DLKQVGPITPDVNSNSPL--RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI + ++ R+YV SI +L ++ F FG IK + ++ D KH
Sbjct: 172 NVPQAAPIIASIQESAAKLPRIYVASIHKDLSAKDVKSVFEAFGKIKKVELAPDTAPGKH 231
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+G+ F++Y+ ++A ++ MN LGG+ ++V
Sbjct: 232 RGWGFIDYENHKSAADAISSMNLFDLGGQFLRV 264
>gi|256073105|ref|XP_002572873.1| fuse-binding protein-interacting repressor siahbp1 [Schistosoma
mansoni]
Length = 534
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 90/121 (74%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE+ E+ IR+ F PFGPIKS+ +SWD + QKHKGFAFVE+++PEAA L+L+Q
Sbjct: 106 RIYVGSISFEIGEEEIRKTFSPFGPIKSVALSWDTVLQKHKGFAFVEFEVPEAASLALDQ 165
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG L GRN+K VGRPSN PQ ++ E+ E R+Y+AS+HP+LTE DI
Sbjct: 166 MNGYTLAGRNLK-------VGRPSNAPQTAALEAELRAEVSTKPRVYIASVHPELTESDI 218
Query: 166 K 166
+
Sbjct: 219 Q 219
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP-ITQKHKGFAFVEYDIPEAAQLSLE 104
RVY+ S+ EL E I+ F FG + S ++ DP + +H+GF +++++ EAA ++
Sbjct: 203 RVYIASVHPELTESDIQTVFEAFGKVNSCSLYPDPKCSGRHRGFGYIDFESEEAAIAAVS 262
Query: 105 QMNGVMLGGRNIKV 118
MN L G+ ++V
Sbjct: 263 SMNCFDLAGQQLRV 276
>gi|350646433|emb|CCD58930.1| fuse-binding protein-interacting repressor siahbp1, putative
[Schistosoma mansoni]
Length = 522
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 90/121 (74%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE+ E+ IR+ F PFGPIKS+ +SWD + QKHKGFAFVE+++PEAA L+L+Q
Sbjct: 94 RIYVGSISFEIGEEEIRKTFSPFGPIKSVALSWDTVLQKHKGFAFVEFEVPEAASLALDQ 153
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG L GRN+K VGRPSN PQ ++ E+ E R+Y+AS+HP+LTE DI
Sbjct: 154 MNGYTLAGRNLK-------VGRPSNAPQTAALEAELRAEVSTKPRVYIASVHPELTESDI 206
Query: 166 K 166
+
Sbjct: 207 Q 207
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP-ITQKHKGFAFVEYDIPEAAQLSLE 104
RVY+ S+ EL E I+ F FG + S ++ DP + +H+GF +++++ EAA ++
Sbjct: 191 RVYIASVHPELTESDIQTVFEAFGKVNSCSLYPDPKCSGRHRGFGYIDFESEEAAIAAVS 250
Query: 105 QMNGVMLGGRNIKV 118
MN L G+ ++V
Sbjct: 251 SMNCFDLAGQQLRV 264
>gi|198416925|ref|XP_002124386.1| PREDICTED: similar to poly-U binding splicing factor 60 [Ciona
intestinalis]
Length = 511
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 92/121 (76%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +++ + +++AF PFGPIKS++MS+DPIT KHKG+ F++Y+IPEAA L+ EQ
Sbjct: 94 RVYVGSIYYDIAQSMVQEAFTPFGPIKSMDMSFDPITGKHKGYCFIDYEIPEAAHLAAEQ 153
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
M LGGR IK VGRPSN+ QAQ +ID++ E+ YNRIYVASIHPDL E D+
Sbjct: 154 MMIAQLGGRTIK-------VGRPSNIGQAQPIIDQLASESNNYNRIYVASIHPDLEESDL 206
Query: 166 K 166
+
Sbjct: 207 R 207
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 28 DLKQVGPITPDV--NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI + SN+ R+YV SI +L+E +R F FG I S M D +T++H
Sbjct: 171 NIGQAQPIIDQLASESNNYNRIYVASIHPDLEESDLRSVFQAFGKILSCQMDRDFVTRRH 230
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+G+AF+EY++ ++ Q ++ MN LGG+ ++V
Sbjct: 231 RGYAFIEYELKQSCQDAVASMNMFDLGGQYLRV 263
>gi|358339509|dbj|GAA27913.2| poly(U)-binding-splicing factor PUF60-B [Clonorchis sinensis]
Length = 512
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 68/121 (56%), Positives = 88/121 (72%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE+ ED +R+ F PFGPIKS+ +SWD QKHKGFAFVE+++PEAA L+LEQ
Sbjct: 93 RIYVGSISFEVGEDELRRTFGPFGPIKSVALSWDATLQKHKGFAFVEFEVPEAASLALEQ 152
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG L GR +K VGRPSN PQ ++ E+ + R+YVAS+HP+LTE D+
Sbjct: 153 MNGHTLAGRTLK-------VGRPSNAPQTGNLESELRSDENTRCRVYVASVHPELTEADM 205
Query: 166 K 166
+
Sbjct: 206 Q 206
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 31 QVGPITPDVNS--NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP-ITQKHKG 87
Q G + ++ S N+ RVYV S+ EL E ++ F FG ++ + DP +H+G
Sbjct: 173 QTGNLESELRSDENTRCRVYVASVHPELTEADMQTVFEAFGKVEECLLYPDPKCPGRHRG 232
Query: 88 FAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
F ++ + E A ++ MNG L G ++V
Sbjct: 233 FGYIYFHSEEEAIAAVTSMNGFDLAGLQLRV 263
>gi|119602591|gb|EAW82185.1| fuse-binding protein-interacting repressor, isoform CRA_b [Homo
sapiens]
Length = 171
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 77/92 (83%), Gaps = 7/92 (7%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
MN VMLGGRNIK VGRPSN+ QAQ +
Sbjct: 147 MNSVMLGGRNIK-------VGRPSNIGQAQPI 171
>gi|363745135|ref|XP_423964.3| PREDICTED: poly(U)-binding-splicing factor PUF60-like, partial
[Gallus gallus]
Length = 158
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/72 (83%), Positives = 66/72 (91%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIK 117
MN VMLGGRNIK
Sbjct: 147 MNSVMLGGRNIK 158
>gi|313228939|emb|CBY18091.1| unnamed protein product [Oikopleura dioica]
Length = 505
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 87/121 (71%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++++E+ E T++ +F FGP++S++M +D T +HKGFAFVE++ PEAA L+ E
Sbjct: 128 RIYVGAVNYEVGEATVKTSFETFGPVRSVDMIYDINTGRHKGFAFVEFETPEAAHLACED 187
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
M G +GGR++K VGR SNM A+ I + +EA YNRIYVAS+H +L+++DI
Sbjct: 188 MQGATVGGRSVK-------VGRTSNMGMAEHFISQFAQEAARYNRIYVASVHENLSDDDI 240
Query: 166 K 166
+
Sbjct: 241 R 241
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT-QKHKGFAFVEYDIPEAAQLSLE 104
R+YV S+ L +D IR F FG + S ++ D + H G+ ++E++ PE+ +++
Sbjct: 225 RIYVASVHENLSDDDIRAVFEAFGRVVSCSLVRDVSEPETHCGYGYIEFENPESMDEAVK 284
Query: 105 QMNGVMLGGRNIKV 118
M+ LGG+ ++V
Sbjct: 285 AMDQYDLGGKMLRV 298
>gi|47212475|emb|CAF90271.1| unnamed protein product [Tetraodon nigroviridis]
Length = 579
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 58/72 (80%), Positives = 66/72 (91%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MS+D +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 117 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSFDSVTMKHKGFAFVEYEMPEAAQLALEQ 176
Query: 106 MNGVMLGGRNIK 117
MN V+LGGRNIK
Sbjct: 177 MNSVVLGGRNIK 188
>gi|313244755|emb|CBY15469.1| unnamed protein product [Oikopleura dioica]
Length = 2588
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 85/123 (69%), Gaps = 9/123 (7%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVGSI +E+ E TIRQ+F FGP++SI+MS+D T +HKGF F+E++ PEAA L+LE
Sbjct: 2220 KIYVGSIYYEIGEATIRQSFETFGPVRSIDMSYDQGTNRHKGFCFLEFECPEAAFLALEH 2279
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQ--AQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
M + +GGR +K VGR SN+ Q AQ I + EA Y+R+Y+A+IH ++ +
Sbjct: 2280 MQSITIGGRAVK-------VGRLSNIGQVAAQHFIAQFGNEAAKYHRVYIANIHVNIVDT 2332
Query: 164 DIK 166
DIK
Sbjct: 2333 DIK 2335
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVY+ +I + + I+ F FG + S + + T +HK + FVEYD ++ + ++
Sbjct: 2319 RVYIANIHVNIVDTDIKAVFESFGRVLSCQLVKNVDTGRHKNYGFVEYDNSQSMKEAISA 2378
Query: 106 MNGVMLGGRNIKV----------HFPHVQVGRPSNMPQAQSVIDEITEEAK 146
MNG LGG+ I+V + P V G S + E+ ++ K
Sbjct: 2379 MNGFDLGGQCIRVGPCVVPPSMHNIPTVAPGNASTALSGAKAVQEMLKKKK 2429
>gi|402585183|gb|EJW79123.1| hypothetical protein WUBG_09969 [Wuchereria bancrofti]
Length = 114
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 64/74 (86%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVY+GSISFE++E+ I+ AF FGPIKSINMSWD +T HKGFAF+EY+IPEAA L+ E
Sbjct: 37 RVYIGSISFEVREEMIKNAFGVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLAQES 96
Query: 106 MNGVMLGGRNIKVH 119
MNGV++GGRN+KV+
Sbjct: 97 MNGVLMGGRNLKVN 110
>gi|167517167|ref|XP_001742924.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778023|gb|EDQ91638.1| predicted protein [Monosiga brevicollis MX1]
Length = 231
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 76/121 (62%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVG I F+ E I +AF PFG I+ ++D KHKGF FVEYD PEAA L+LEQ
Sbjct: 20 RVYVGGIPFDAGEQEIAEAFRPFGAIQQCAFTYDQALNKHKGFCFVEYDAPEAALLALEQ 79
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
M + GR +K +GRP+N PQA ++ + +A +RIYV+SIHPDL E +I
Sbjct: 80 MTSYNIKGRTLK-------IGRPNNAPQALPYLETLAAKAAEAHRIYVSSIHPDLGELEI 132
Query: 166 K 166
K
Sbjct: 133 K 133
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQ-KHKGFAFVEYDIPEAAQLSLE 104
R+YV SI +L E I+ F FGP+ + ++ + H+G+ +V+++ ++ +++
Sbjct: 117 RIYVSSIHPDLGELEIKSVFESFGPVTRVILAPGAEGKGNHRGYGWVDFEEQKSVPDAIK 176
Query: 105 QMNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 177 SMNLFDLGGQFLRV 190
>gi|328771203|gb|EGF81243.1| hypothetical protein BATDEDRAFT_87866 [Batrachochytrium
dendrobatidis JAM81]
Length = 574
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 82/120 (68%), Gaps = 9/120 (7%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+GSI F++ E+ +R AFLPFG IKSI+M+ DP T +HKGF F+EYD+P++A ++E+
Sbjct: 187 RIYIGSIPFDMLEENVRVAFLPFGCIKSISMTLDPATNRHKGFCFLEYDVPDSAHYAIER 246
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG+ +GGR ++ VGRPSN + + + L R++++++ ++E+DI
Sbjct: 247 MNGLDMGGRALR-------VGRPSNFSNFD--VSTLPQPMPLNTRLFISNVSEIVSEDDI 297
>gi|440797518|gb|ELR18604.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 696
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 56/183 (30%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N R+YVGS++FEL E+ I+ AF PFGP+KS++++ DP+TQ+ KGFAFVEY P+AA
Sbjct: 246 NQQLACRIYVGSLNFELSEEDIKTAFSPFGPVKSVSLTKDPLTQRSKGFAFVEYAYPDAA 305
Query: 100 QLSLEQMNGVMLGGRNIKVHFPH-----------------------------VQVGRPSN 130
+L+ MNG ML GR +KV PH + V PS
Sbjct: 306 TAALKHMNGFMLAGRQLKVGRPHTPGAGLPGMPGMPGVMMPGLSPFPQLNPSLPVMNPSI 365
Query: 131 MPQAQ--------------------SVIDEITE-------EAKLYNRIYVASIHPDLTEE 163
+ QA ++ E T+ +A NRIYV SIH DLT +
Sbjct: 366 LLQANAAIEAQKAAAAAANGSQPTPEMMQEFTKLTGKTAADATASNRIYVGSIHWDLTSD 425
Query: 164 DIK 166
DIK
Sbjct: 426 DIK 428
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 30 KQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
K G D +++ R+YVGSI ++L D I+ F FG +KS + +P T KHKG+
Sbjct: 398 KLTGKTAADATASN--RIYVGSIHWDLTSDDIKTVFEAFGTVKSCVLMPNPETGKHKGYG 455
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
FVEY+ ++A+ +++QMNG LGGR IKV
Sbjct: 456 FVEYEESKSAEEAIQQMNGWDLGGRPIKV 484
>gi|395507287|ref|XP_003757958.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60-like [Sarcophilus harrisii]
Length = 463
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 75/120 (62%), Gaps = 16/120 (13%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+V VGSI ++L ED I QAF PF PIK+INMSW+ T KHK AFVE ++PE AQL+L
Sbjct: 78 QVSVGSIYYKLGEDIICQAFAPFEPIKNINMSWNSDTMKHKALAFVECEVPEVAQLALXX 137
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN V LG R K+ V RP ITEE + +N IY+AS+H DL+ +DI
Sbjct: 138 MNSVRLGVRITKMD----XVYRP------------ITEEVRAFNCIYMASVHKDLSGDDI 181
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
PIT +V + + +Y+ S+ +L D I F F IKS ++WDP + + GF Y
Sbjct: 156 PITEEVRAFNC--IYMASVHKDLSGDDIXHVFEAFEKIKSCILTWDPXHKDYDGFC--XY 211
Query: 94 DIPEAAQLSLEQMNGVMLG 112
+ ++ Q ++ MN + LG
Sbjct: 212 EKAQSTQDAISFMNXINLG 230
>gi|313219857|emb|CBY30773.1| unnamed protein product [Oikopleura dioica]
Length = 219
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+V++GSI +E+ E +R AF PFG I +N++ DP+T KHKGFAF+ +++ EAAQL++EQ
Sbjct: 73 QVFIGSIFYEVSEVQLRDAFSPFGIINVVNLNLDPVTGKHKGFAFIWFELAEAAQLAIEQ 132
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG + GR IK VGRP+ I+E ++K IYVA I PD+ + DI
Sbjct: 133 MNGANMWGRPIK-------VGRPTQAQPYLKTIEEAVYDSKRSTCIYVAGIQPDMDDTDI 185
Query: 166 K 166
+
Sbjct: 186 R 186
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
+YV I ++ + IR F PFG IK + ++ D ++ +KG AF+EY +
Sbjct: 171 IYVAGIQPDMDDTDIRDLFSPFGEIKKMQLTKDDVSNVNKGNAFIEYTL 219
>gi|313232466|emb|CBY24134.1| unnamed protein product [Oikopleura dioica]
Length = 219
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+V++GSI +E+ E +R AF PFG I +N++ DP+T KHKGFAF+ +++ EAAQL++EQ
Sbjct: 73 QVFIGSIFYEVSEVQLRDAFSPFGIINVVNLNLDPVTGKHKGFAFIWFELAEAAQLAIEQ 132
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG + GR IK VGRP+ I+E ++K IYVA I PD+ + DI
Sbjct: 133 MNGANMWGRPIK-------VGRPTQAQPYLKTIEEAVYDSKRSTCIYVAGIQPDMDDTDI 185
Query: 166 K 166
+
Sbjct: 186 R 186
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
+YV I ++ + IR F PFG IK + ++ D ++ +KG AF+EY +
Sbjct: 171 IYVAGIQPDMDDTDIRGLFSPFGEIKKMQLTKDDVSNVNKGNAFIEYTL 219
>gi|326427574|gb|EGD73144.1| hypothetical protein PTSG_04857 [Salpingoeca sp. ATCC 50818]
Length = 2295
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 79/121 (65%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+G++S E+ E +R+AF +G I+ ++ + KG+AF+ +D PEAA L+L +
Sbjct: 1898 RIYIGNLSREVTEFDLRKAFRKYGGIRECSVKHETTGTSFKGYAFLHFDAPEAAMLALSE 1957
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV++GGRNI +GRP+N +A ++ + + A NRIYV S+H DL+++DI
Sbjct: 1958 MNGVIIGGRNII-------LGRPNNSDRAMEFLEPLAQAAAEANRIYVTSLHADLSQDDI 2010
Query: 166 K 166
K
Sbjct: 2011 K 2011
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK---HKGFAFVEYDIPEAAQLS 102
R+YV S+ +L +D I+ F FG I+SI + P + H+G+ ++EY+ A
Sbjct: 1995 RIYVTSLHADLSQDDIKTVFEGFGAIRSIEVM--PGVEGRGLHQGYGWIEYEDNSALAAV 2052
Query: 103 LEQMNGVMLGGRNIKV 118
+ L G+ +K+
Sbjct: 2053 MMCATNFELAGQFVKM 2068
>gi|320165239|gb|EFW42138.1| hypothetical protein CAOG_07523 [Capsaspora owczarzaki ATCC 30864]
Length = 598
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 10/123 (8%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT-QKHKGFAFVEYDIPEAAQLSLE 104
RVYVGSI FE E +R A GPI+S++ DP+ +HKGF FVEY+ PE+ + L
Sbjct: 211 RVYVGSIPFEAGEREVRAAMSECGPIRSVSFVNDPVAPTRHKGFGFVEYEYPESGDIVLS 270
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPSNMPQA-QSVIDEITEEAKLYNRIYVASIHPDLTEE 163
QM+ +G R +K P N PQ Q +I+E+ +E + ++VA+IHP+L+E
Sbjct: 271 QMHHARIGDRQLKFGTP--------NAPQPMQVLIEELRKEGSTFPHVFVANIHPELSES 322
Query: 164 DIK 166
DI+
Sbjct: 323 DIR 325
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V +I EL E IR+ F FGP+ + D +T +HKG +V+++ + A+ ++ +
Sbjct: 310 VFVANIHPELSESDIREVFQSFGPVAYCILMVDLVTGRHKGCGYVQFESLQTAKDAIAAL 369
Query: 107 NGVMLGG 113
N + LGG
Sbjct: 370 NRLDLGG 376
>gi|320165216|gb|EFW42115.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 570
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 10/123 (8%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT-QKHKGFAFVEYDIPEAAQLSLE 104
RVYVGSI FE E +R A GPI+S++ DP+ +HKGF FVEY+ PE+ + L
Sbjct: 198 RVYVGSIPFEAGEREVRAAMSECGPIRSVSFVNDPVAPTRHKGFGFVEYEYPESGDIVLS 257
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPSNMPQA-QSVIDEITEEAKLYNRIYVASIHPDLTEE 163
QM+ +G R +K P N PQ Q +I+E+ +E + ++VA+IHP+L+E
Sbjct: 258 QMHHARIGDRQLKFGTP--------NAPQPMQVLIEELRKEGSTFPHVFVANIHPELSES 309
Query: 164 DIK 166
DI+
Sbjct: 310 DIR 312
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V +I EL E IR+ F FGP+ + D +T +HKG +V+++ + A+ ++ +
Sbjct: 297 VFVANIHPELSESDIREVFQSFGPVAYCILMVDLVTGRHKGCGYVQFESLQTAKDAIAAL 356
Query: 107 NGVMLGG 113
N + LGG
Sbjct: 357 NRLDLGG 363
>gi|402580127|gb|EJW74077.1| hypothetical protein WUBG_15015 [Wuchereria bancrofti]
Length = 233
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 53/67 (79%), Gaps = 7/67 (10%)
Query: 85 HKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
HKGFAF+EY+IPEAA L+ E MNGV++GGRN+K VGRPSNMPQAQ +I+ + +E
Sbjct: 170 HKGFAFLEYEIPEAALLAQESMNGVLMGGRNLK-------VGRPSNMPQAQPIIEMVMQE 222
Query: 145 AKLYNRI 151
AK Y+R+
Sbjct: 223 AKAYHRL 229
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 49/61 (80%), Gaps = 7/61 (11%)
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNGV++GGRN+KV GRPSNMPQAQ +I+ + +EAK Y+R+YVAS+HPDL+E D+
Sbjct: 1 MNGVLMGGRNLKV-------GRPSNMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDL 53
Query: 166 K 166
K
Sbjct: 54 K 54
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP---ITQKHKGFAFVEYDIPEAAQLS 102
RVYV S+ +L E ++ F FG + ++ H+GF ++E+ ++A +
Sbjct: 38 RVYVASVHPDLSESDLKSVFEAFGEVTKCQLARATGPNAGSGHRGFGYLEFSNAQSANEA 97
Query: 103 LEQMNGVMLGGRNIKV 118
+ MN LGG+ ++V
Sbjct: 98 IAGMNMFDLGGQYLRV 113
>gi|353238006|emb|CCA69965.1| related to splicing factor HCC1 [Piriformospora indica DSM 11827]
Length = 543
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 59/82 (71%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+ P+++YVGS+ F+L E+ I+Q F PFG ++ +++ DP T + KG+ F++Y PE A+
Sbjct: 301 SHGPMQLYVGSLHFQLTEEEIKQVFEPFGELEFVDLHRDPATGRSKGYCFIQYRRPEDAK 360
Query: 101 LSLEQMNGVMLGGRNIKVHFPH 122
++LEQM+G L GR ++V+ H
Sbjct: 361 MALEQMDGFELAGRQLRVNTVH 382
>gi|281209343|gb|EFA83511.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 1109
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+G+I F L E + F PFGPIKS+++S DP T K KG+ F+EY PEAA ++
Sbjct: 686 RIYIGNIHFNLTETDLTSIFSPFGPIKSLSLSKDPATGKSKGYCFIEYSYPEAANNAISH 745
Query: 106 MNGVMLGGRNIKVHFPHV 123
MN L GR IKV P++
Sbjct: 746 MNHQSLAGRQIKVGRPYI 763
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSI + + ED I+ F G + S ++ + + +HKGF F++YD ++A+ ++
Sbjct: 874 RIYVGSIPWNVNEDQIKVIFSSIGNVVSCSLMPNLESGRHKGFGFIDYDNSKSAEDAIAT 933
Query: 106 MNGVMLGGRNIKVHFP 121
+NG +GGR +KV P
Sbjct: 934 LNGYDIGGRQLKVGRP 949
>gi|428182175|gb|EKX51036.1| hypothetical protein GUITHDRAFT_134574 [Guillardia theta CCMP2712]
Length = 458
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGS+ F+LKE +R F PFGPIK+I MS++P T K KG+AF+EY A +
Sbjct: 99 RLYVGSLHFDLKEADVRAIFQPFGPIKTIEMSYEPTTGKSKGYAFIEYMNDAQADACEKA 158
Query: 106 MNGVMLGGRNIKVHFPH 122
M+G M+ GR IKV PH
Sbjct: 159 MDGFMIAGRPIKVGRPH 175
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P R+Y+GS+ F++KE ++Q F FG IK I+M +P KHKG+ F+EY+ + A ++
Sbjct: 230 PARIYIGSVLFDVKESEVKQIFQVFGSIKQISMIPNPENGKHKGYGFIEYEKHDDAVQAI 289
Query: 104 EQMNGVMLGGRNIK 117
+ MNG L GR +K
Sbjct: 290 QAMNGFQLAGRPLK 303
>gi|384498450|gb|EIE88941.1| hypothetical protein RO3G_13652 [Rhizopus delemar RA 99-880]
Length = 454
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+GS+ F L E+ +RQ F PFGP+ +N+ DP T + KGF F++Y A+ +LE+
Sbjct: 225 RLYIGSLHFSLTENDVRQIFEPFGPLDFVNLHKDPETGRSKGFGFIQYKNANDAKQALEK 284
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
MNG L GRN+KV V S + +D+ E N + A + L D
Sbjct: 285 MNGFELAGRNLKVGL----VSEKSGTTMSTFGLDDEETEGLALNSLSRAELMAKLAARD 339
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L F G ++ + D ++K KG +VE+ + Q +L +
Sbjct: 126 VFVTQLAARLTTREFDAFFSQAGRVREAKIITDRNSRKSKGCGYVEFYDETSVQNAL-AL 184
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G + V + R + M ++ + TE LY R+Y+ S+H LTE D++
Sbjct: 185 SGQKLLGIPVLVQLSEAEKNRLA-MAAQRNAMGVTTE--PLYQRLYIGSLHFSLTENDVR 241
>gi|440791603|gb|ELR12841.1| splicing factor, CC1like subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 594
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
++P R+YVG++ +L ED +R F PFG I+ IN+ DP T + KGFAFV+Y PE A+
Sbjct: 268 SAPTRLYVGNLHTDLAEDDLRTVFEPFGDIQQINLHIDPETGRSKGFAFVQYKSPEDAKK 327
Query: 102 SLEQMNGVMLGGRNIKV 118
+L+ NG+ L GR +KV
Sbjct: 328 ALQHCNGMELAGRQLKV 344
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ ++ E + + F G + I + D ++K KGF ++EY + L+L Q+
Sbjct: 171 VFASNLPIRASESELFEFFGKAGKVHDIRLITDRNSRKSKGFGYIEYLDKSSVPLALHQL 230
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
NG G+ + V + R + A + + A R+YV ++H DL E+D++
Sbjct: 231 NGTQCKGQTVLVQITQAEKNRAAAAAAAAAANAPPSLSAP--TRLYVGNLHTDLAEDDLR 288
>gi|328865553|gb|EGG13939.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 949
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 35/156 (22%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+G+I F L E I AF PFGPIKS+++S DP T + +GF F+EY PEAA +++
Sbjct: 604 RIYIGNIHFNLTEADIVAAFSPFGPIKSLSLSKDPATGRSRGFCFIEYTYPEAAINAIQN 663
Query: 106 MNGVMLGGRNIKVHFPHV--------------------QVGRPSNMPQ------------ 133
MN + GR IKV P + ++ +P+ +P
Sbjct: 664 MNQKTISGRQIKVRQPSIPVINPAATGVSVGMGGGGMSEILQPNIIPSNTFLSSTSVASS 723
Query: 134 --AQSVIDEI-TEEAKLYNRIYVASIHPDLTEEDIK 166
+Q++++ +E NR+YV S+ + TE+ IK
Sbjct: 724 FSSQALLNNTPVKERDNDNRVYVGSVPWNATEDQIK 759
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGS+ + ED I+ F G + S ++ + T +H G+ F++YD P++A+ ++
Sbjct: 743 RVYVGSVPWNATEDQIKTIFSSIGNVVSCSLKPNLETGRHMGYGFIDYDNPKSAEDAIST 802
Query: 106 MNGVMLGGRNIKVHFP 121
NG + GR +KV P
Sbjct: 803 FNGYDINGRQLKVRKP 818
>gi|443921112|gb|ELU40879.1| splicing factor, CC1-like family protein [Rhizoctonia solani AG-1
IA]
Length = 399
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+++YVGS+ F L E IRQ F PFG + +++ DP T K KG+ F++Y PE A+++LE
Sbjct: 170 MQLYVGSLHFNLTESDIRQVFEPFGELDFVDLHRDPATGKSKGYCFIQYKRPEDARMALE 229
Query: 105 QMNGVMLGGRNIKVHFPH 122
QM G L GR ++V+ H
Sbjct: 230 QMEGFELAGRQLRVNTVH 247
>gi|409051610|gb|EKM61086.1| hypothetical protein PHACADRAFT_247456 [Phanerochaete carnosa
HHB-10118-sp]
Length = 584
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 35 ITPDVNSN-SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+ P V+S+ +++YVGS+ F L E IRQ F PFG ++ +++ DP+T + KG+AFV+Y
Sbjct: 347 LPPGVSSHHGGMQLYVGSLHFNLTESDIRQVFEPFGELEFVDLHRDPMTGRSKGYAFVQY 406
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQ 133
E A+++LEQM G L GR ++V+ H + G PQ
Sbjct: 407 KRGEDAKMALEQMEGFELAGRTLRVNTVH-EKGNVRYTPQ 445
>gi|298710792|emb|CBJ32209.1| RNA-binding protein SiahBP [Ectocarpus siliculosus]
Length = 696
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 11/100 (11%)
Query: 31 QVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
Q P P ++P R+YVGS+ +ELKE I F FG +K ++MS D T +HKGF F
Sbjct: 277 QTAPAQP----SNPRRIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCF 332
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
+EY ++A +L MNG L GR IK VGRP N
Sbjct: 333 IEYVDVKSADAALRAMNGFELAGRAIK-------VGRPLN 365
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQ-KHKGFAFVEYDIPEAAQLSLE 104
++YVG++ + + I+ F PFG + M DP HKGF F++Y A+ ++
Sbjct: 427 KIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVID 486
Query: 105 QMNGVMLGGRNIKVHFPHVQ 124
M+ L GR ++V + Q
Sbjct: 487 TMSSFELAGRTLRVAWAQDQ 506
>gi|449551106|gb|EMD42070.1| hypothetical protein CERSUDRAFT_90674 [Ceriporiopsis subvermispora
B]
Length = 623
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+ +++YVGS+ F L E I+Q F PFG ++ +++ DP+T + KG+AFV+Y E A+
Sbjct: 393 SHGGMQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRSEDAR 452
Query: 101 LSLEQMNGVMLGGRNIKVHFPH 122
++LEQM G L GR ++V+ H
Sbjct: 453 MALEQMEGFELAGRTLRVNTVH 474
>gi|395334381|gb|EJF66757.1| splicing factor CC1-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 624
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 55/78 (70%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+++YVGS+ F L E I+Q F PFG ++ +++ DP+T + KG+AFV+Y E A+++LE
Sbjct: 398 MQLYVGSLHFNLSESDIKQVFEPFGELEFVDLHRDPVTGRSKGYAFVQYKRAEDAKMALE 457
Query: 105 QMNGVMLGGRNIKVHFPH 122
QM+G L GR ++V+ H
Sbjct: 458 QMDGFELAGRTLRVNTVH 475
>gi|392571432|gb|EIW64604.1| splicing factor CC1-like protein [Trametes versicolor FP-101664
SS1]
Length = 344
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+++YVGS+ F L E I+Q F PFG ++ +++ DP+T + KG+AFV+Y E A+++LE
Sbjct: 118 MQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRAEDAKMALE 177
Query: 105 QMNGVMLGGRNIKVHFPH 122
QM G L GR ++V+ H
Sbjct: 178 QMEGFELAGRTLRVNTVH 195
>gi|325191168|emb|CCA25956.1| Poly(U)bindingsplicing factor PUF60 putative [Albugo laibachii
Nc14]
Length = 454
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ +ELKED IR F PFG I SI++S +P T + KGF F+E++ AA+ +++
Sbjct: 137 RLYVGNLYYELKEDDIRNVFAPFGAIHSIDLSMEPGTGRSKGFCFLEFNDVLAAESAVQV 196
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNR----IYVASIHPDLT 161
+NG + R IKV PH R + P+ I +EA + N +Y+ + +L
Sbjct: 197 LNGSTMANRAIKVGRPH----RGNQNPKDSEAAVNIGKEA-IRNVPTKCVYIGGVRTELN 251
Query: 162 EEDIK 166
I+
Sbjct: 252 SRHIE 256
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK--HKGFAFVEYDIPEAAQLSLE 104
VY+G + EL I F PFG IK M+ ++ H+G+ F+E+ A +++
Sbjct: 241 VYIGGVRTELNSRHIESIFAPFGEIKHCVMTAVSSSESGVHRGYGFIEFGDEICAMNAIQ 300
Query: 105 QMNGVMLGGRNIKV 118
MNG L G+ +KV
Sbjct: 301 HMNGFELAGQTLKV 314
>gi|302695543|ref|XP_003037450.1| hypothetical protein SCHCODRAFT_80935 [Schizophyllum commune H4-8]
gi|300111147|gb|EFJ02548.1| hypothetical protein SCHCODRAFT_80935 [Schizophyllum commune H4-8]
Length = 409
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+++YVGS+ F L E I+Q F PFG ++ +++ DP T + KG+AFV+Y E A++
Sbjct: 179 GGAMQLYVGSLHFNLTEADIKQVFEPFGELEFVDLHRDPTTGRSKGYAFVQYKRAEDARM 238
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVG 126
++EQM G L GR +KV+ H + G
Sbjct: 239 AMEQMEGFELAGRQLKVNTVHDKGG 263
>gi|402217675|gb|EJT97754.1| splicing factor CC1-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 640
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 35 ITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
+ P V + P +++YVGS+ F L E ++Q F PFG ++ +++ DP+T + KGFAFV+
Sbjct: 397 LPPGVTAPPPGSMQLYVGSLHFNLTESDVKQVFEPFGELEFVDLHRDPLTGRSKGFAFVQ 456
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDE 140
Y E A+++L+ M+G L GR +KV+ H + G Q+ S +DE
Sbjct: 457 YKRSEDARMALQSMDGFDLAGRQLKVNTVHEKGGAIRYQSQSDS-LDE 503
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 37 PDVNSNSPLR-VYVGSISFELKEDTIRQAF---LPFGPIKSINMSWDPITQKHKGFAFVE 92
P+ + +S LR V+V ++ L + F L G ++ + + D ++++ KG A+VE
Sbjct: 294 PEHSEDSELRSVFVSQLAARLTARDLGYFFEEKLGEGSVRDVRIVTDRVSRRSKGIAYVE 353
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIY 152
+ ++ + G ++ G I V + + + + + +T ++Y
Sbjct: 354 LSSIDMVSRAI-ALTGTIVMGLPIMVQLTESERNKVAASGSSMHLPPGVTAPPPGSMQLY 412
Query: 153 VASIHPDLTEEDIK 166
V S+H +LTE D+K
Sbjct: 413 VGSLHFNLTESDVK 426
>gi|170083917|ref|XP_001873182.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650734|gb|EDR14974.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 448
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P V ++ +YVGS+ F L E I+Q F PFG ++ +++ DP+T + KG+AFV+Y
Sbjct: 214 PGVTASHGAILYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRS 273
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPH 122
E A+++LEQM G L GR ++V+ H
Sbjct: 274 EDARMALEQMEGFELAGRTLRVNTVH 299
>gi|392597434|gb|EIW86756.1| splicing factor CC1-like protein [Coniophora puteana RWD-64-598
SS2]
Length = 360
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+ +++YVGS+ F L E I+Q F PFG ++ +++ D T + KG+AFV+Y PE A++
Sbjct: 132 HGAMQLYVGSLHFNLTEADIKQVFEPFGDLEFVDLHRDSTTGRSKGYAFVQYKRPEDAKM 191
Query: 102 SLEQMNGVMLGGRNIKVHFPH 122
+LEQM+G L GR ++V+ H
Sbjct: 192 ALEQMDGFELAGRTLRVNTVH 212
>gi|390604396|gb|EIN13787.1| splicing factor CC1-like protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 433
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
++ P ++YVGS+ F L E I+Q F PFG ++ +++ DP+T + KG+ F++Y E A
Sbjct: 203 GTHGPRQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYCFIQYKRAEDA 262
Query: 100 QLSLEQMNGVMLGGRNIKVHFPH 122
+++LEQM G L GR ++V+ H
Sbjct: 263 KMALEQMEGFELAGRTLRVNTVH 285
>gi|336389603|gb|EGO30746.1| hypothetical protein SERLADRAFT_455043 [Serpula lacrymans var.
lacrymans S7.9]
Length = 583
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 35 ITPDVNS-NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+ P V++ + +++YVGS+ F L E I+Q F PFG ++ +++ DP+T + KG+AFV+Y
Sbjct: 347 LPPGVSAPHGAMQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQY 406
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122
E A+++LEQM G L GR ++V+ H
Sbjct: 407 KRAEDARMALEQMEGFELAGRTLRVNTVH 435
>gi|336376609|gb|EGO04944.1| hypothetical protein SERLA73DRAFT_174031 [Serpula lacrymans var.
lacrymans S7.3]
Length = 583
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 35 ITPDVNS-NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+ P V++ + +++YVGS+ F L E I+Q F PFG ++ +++ DP+T + KG+AFV+Y
Sbjct: 347 LPPGVSAPHGAMQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQY 406
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122
E A+++LEQM G L GR ++V+ H
Sbjct: 407 KRAEDARMALEQMEGFELAGRTLRVNTVH 435
>gi|403412344|emb|CCL99044.1| predicted protein [Fibroporia radiculosa]
Length = 599
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 54/78 (69%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+++YVGS+ F L E I+Q F PFG ++ +++ DP+T + KG+AFV+Y E A+++LE
Sbjct: 373 MQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRAEDARMALE 432
Query: 105 QMNGVMLGGRNIKVHFPH 122
QM G L GR ++V+ H
Sbjct: 433 QMEGFELAGRTLRVNTVH 450
>gi|299755304|ref|XP_002912089.1| hypothetical protein CC1G_13622 [Coprinopsis cinerea okayama7#130]
gi|298411164|gb|EFI28595.1| hypothetical protein CC1G_13622 [Coprinopsis cinerea okayama7#130]
Length = 580
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
+ P V ++ + +YVGS+ F L E I+Q F PFG ++ +++ DP+T + KG+AFV+Y
Sbjct: 346 LPPGVTASGAI-LYVGSLHFNLTESDIKQVFEPFGELEFVDLHKDPMTGRSKGYAFVQYK 404
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPH 122
E A+++LEQM G L GR ++V+ H
Sbjct: 405 RAEDARMALEQMEGFELAGRTLRVNTVH 432
>gi|331242735|ref|XP_003334013.1| RNA-binding protein rsd1 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 546
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Query: 27 YDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHK 86
Y+L + GP D NS + R+YVGS++F L +D IRQ F PFG I+ +++ D IT K K
Sbjct: 409 YELNR-GPGPNDPNSYA--RLYVGSLNFNLTDDDIRQVFQPFGDIEYVDLHRDQITGKSK 465
Query: 87 GFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
G+AFV++ A+ ++E+MNG L GR ++V
Sbjct: 466 GYAFVQFKNMHDAKNAMEKMNGFQLAGRALRV 497
>gi|403175151|ref|XP_003889057.1| hypothetical protein PGTG_22242 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171476|gb|EHS64385.1| hypothetical protein PGTG_22242 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 705
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GP P NS R+YVGS++F L +D IRQ F PFG I+ +++ D IT K KG+AFV+
Sbjct: 442 GPNDP----NSYARLYVGSLNFNLTDDDIRQVFQPFGDIEYVDLHRDQITGKSKGYAFVQ 497
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ A+ ++E+MNG L GR ++V
Sbjct: 498 FKNMHDAKNAMEKMNGFQLAGRALRV 523
>gi|403178034|ref|XP_003336468.2| hypothetical protein PGTG_18139 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173310|gb|EFP92049.2| hypothetical protein PGTG_18139 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 705
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GP P NS R+YVGS++F L +D IRQ F PFG I+ +++ D IT K KG+AFV+
Sbjct: 442 GPNDP----NSYARLYVGSLNFNLTDDDIRQVFQPFGDIEYVDLHRDQITGKSKGYAFVQ 497
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ A+ ++E+MNG L GR ++V
Sbjct: 498 FKNMHDAKNAMEKMNGFQLAGRALRV 523
>gi|348676634|gb|EGZ16451.1| hypothetical protein PHYSODRAFT_314245 [Phytophthora sojae]
Length = 449
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+G++ ++LKE+ IR AF PFG I SI++S +P + KGF F+EY+ AA+ +++
Sbjct: 121 RLYIGNLYYDLKEEDIRSAFAPFGAIHSIDLSLEPGASRSKGFCFLEYEDVLAAESAVQV 180
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN-MPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
+NG L R ++V PH P++ + Q I + + IY+A++ +L +
Sbjct: 181 LNGTPLANRAMRVGRPHRGNTNPNDSLSIGQEAIKNVPTKC-----IYIANVRVELNSQH 235
Query: 165 IK 166
++
Sbjct: 236 LE 237
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSW-DPITQK-HKGFAFVEYDIPEAAQLSLE 104
+Y+ ++ EL + F PFG I+S M+ P+ H+G+ F+E+ A +++
Sbjct: 222 IYIANVRVELNSQHLESIFSPFGAIRSSVMAAVSPLESGVHRGYGFMEFVEESCAASAIQ 281
Query: 105 QMNGVMLGGRNIKV 118
MNG L G+ +KV
Sbjct: 282 HMNGFELAGQPLKV 295
>gi|323507689|emb|CBQ67560.1| related to RNA-binding region containing protein 2 [Sporisorium
reilianum SRZ2]
Length = 659
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GP P N+ R+YVGS+ F L ++ ++ F PFG I+ +++ +P T K KGF F++
Sbjct: 401 GPNMP----NTEARLYVGSLHFSLTDENVKAVFEPFGEIEYVDLHREPGTGKSKGFCFIQ 456
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ PE A+ +LEQMNG +L R I+V
Sbjct: 457 FKYPEDAKKALEQMNGFVLAERAIRV 482
>gi|126277401|ref|XP_001369188.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Monodelphis
domestica]
Length = 415
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + DP T + KGF F+ + E A
Sbjct: 234 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECA 293
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 294 RRALEQLNGFELAGRPMRV 312
>gi|126277398|ref|XP_001369153.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Monodelphis
domestica]
Length = 433
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + DP T + KGF F+ + E A
Sbjct: 252 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECA 311
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 312 RRALEQLNGFELAGRPMRV 330
>gi|395503034|ref|XP_003755878.1| PREDICTED: probable RNA-binding protein 23 [Sarcophilus harrisii]
Length = 451
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + DP T + KGF F+ + E A
Sbjct: 270 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECA 329
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 330 RRALEQLNGFELAGRPMRV 348
>gi|126277396|ref|XP_001369125.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Monodelphis
domestica]
Length = 449
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + DP T + KGF F+ + E A
Sbjct: 268 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECA 327
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 328 RRALEQLNGFELAGRPMRV 346
>gi|195996811|ref|XP_002108274.1| hypothetical protein TRIADDRAFT_37071 [Trichoplax adhaerens]
gi|190589050|gb|EDV29072.1| hypothetical protein TRIADDRAFT_37071 [Trichoplax adhaerens]
Length = 351
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P R+Y+GS+ + + ED +R F PFG ++++N+ D T KG+ F++Y P++A+ +
Sbjct: 90 GPTRLYIGSLHYNINEDMLRAIFEPFGLVENVNIIRDSDTNVSKGYGFIQYKEPDSARRA 149
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
LEQ+NG+ + GR IKV R +++ ++ D+ TE +
Sbjct: 150 LEQLNGLEVAGRPIKV---GTVTDRSADLSAMSALDDDDTERGGI 191
>gi|221041852|dbj|BAH12603.1| unnamed protein product [Homo sapiens]
Length = 337
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 88 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 147
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 148 KKALEQLNGFELAGRPMKV 166
>gi|452820290|gb|EME27334.1| RNA-binding protein [Galdieria sulphuraria]
Length = 596
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
G +P+ N + ++YVGSI F + ED +R F PFG + S+ + DP T + +GF FV+
Sbjct: 294 GDTSPNSNPLTFTKLYVGSIHFSISEDDLRTIFEPFGEVISLQLHKDPETGRSRGFGFVQ 353
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKV 118
Y E A+ + EQ+NG+ L GR +KV
Sbjct: 354 YKNHEDAKKAFEQLNGLDLAGRPLKV 379
>gi|395505312|ref|XP_003756986.1| PREDICTED: RNA-binding protein 39 [Sarcophilus harrisii]
Length = 557
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 278 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 337
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 338 KKALEQLNGFELAGRPMKV 356
>gi|393247915|gb|EJD55422.1| splicing factor, CC1-like protein [Auricularia delicata TFB-10046
SS5]
Length = 581
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 52/75 (69%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+++YVGS+ F L E I+Q F PFG + +++ DP T + KG+AFV+Y E A+++LE
Sbjct: 354 MQLYVGSLHFNLTEQDIKQVFEPFGELDFVDLHRDPGTGRSKGYAFVQYKRAEDAKMALE 413
Query: 105 QMNGVMLGGRNIKVH 119
QM+G L GR ++V+
Sbjct: 414 QMDGFELAGRTLRVN 428
>gi|355715684|gb|AES05403.1| RNA binding motif protein 39 [Mustela putorius furo]
Length = 271
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 125 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 184
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 185 KKALEQLNGFELAGRPMKV 203
>gi|194386804|dbj|BAG61212.1| unnamed protein product [Homo sapiens]
Length = 502
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 223 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 282
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 283 KKALEQLNGFELAGRPMKV 301
>gi|184185564|gb|ACC68962.1| RNA binding motif protein 39 isoform a (predicted) [Rhinolophus
ferrumequinum]
Length = 498
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|336176064|ref|NP_001229528.1| RNA-binding protein 39 isoform c [Homo sapiens]
gi|296199707|ref|XP_002747281.1| PREDICTED: RNA-binding protein 39 isoform 4 [Callithrix jacchus]
gi|332858228|ref|XP_003316932.1| PREDICTED: uncharacterized protein LOC458443 isoform 2 [Pan
troglodytes]
gi|335304745|ref|XP_003360013.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719242|ref|XP_003363966.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|345789990|ref|XP_003433300.1| PREDICTED: RNA-binding protein 39 [Canis lupus familiaris]
gi|426391511|ref|XP_004062116.1| PREDICTED: RNA-binding protein 39 isoform 3 [Gorilla gorilla
gorilla]
gi|124297482|gb|AAI31544.1| RBM39 protein [Homo sapiens]
gi|194389138|dbj|BAG61586.1| unnamed protein product [Homo sapiens]
Length = 508
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 223 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 282
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 283 KKALEQLNGFELAGRPMKV 301
>gi|34365067|emb|CAE45890.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 88 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 147
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 148 KKALEQLNGFELAGRPMKV 166
>gi|410055058|ref|XP_003316934.2| PREDICTED: uncharacterized protein LOC458443 isoform 4 [Pan
troglodytes]
gi|410055062|ref|XP_003953767.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391515|ref|XP_004062118.1| PREDICTED: RNA-binding protein 39 isoform 5 [Gorilla gorilla
gorilla]
gi|426391519|ref|XP_004062120.1| PREDICTED: RNA-binding protein 39 isoform 7 [Gorilla gorilla
gorilla]
gi|119596566|gb|EAW76160.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
gi|119596571|gb|EAW76165.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
Length = 373
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 88 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 147
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 148 KKALEQLNGFELAGRPMKV 166
>gi|336176066|ref|NP_001229529.1| RNA-binding protein 39 isoform d [Homo sapiens]
gi|73991836|ref|XP_865202.1| PREDICTED: RNA-binding protein 39 isoform 16 [Canis lupus
familiaris]
gi|296199705|ref|XP_002747280.1| PREDICTED: RNA-binding protein 39 isoform 3 [Callithrix jacchus]
gi|332858230|ref|XP_003316933.1| PREDICTED: uncharacterized protein LOC458443 isoform 3 [Pan
troglodytes]
gi|335304749|ref|XP_003360015.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719245|ref|XP_003363967.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|426391513|ref|XP_004062117.1| PREDICTED: RNA-binding protein 39 isoform 4 [Gorilla gorilla
gorilla]
Length = 502
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 223 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 282
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 283 KKALEQLNGFELAGRPMKV 301
>gi|410055060|ref|XP_003953766.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391517|ref|XP_004062119.1| PREDICTED: RNA-binding protein 39 isoform 6 [Gorilla gorilla
gorilla]
gi|20988961|gb|AAH30493.1| Rbm39 protein [Mus musculus]
gi|34364789|emb|CAE45833.1| hypothetical protein [Homo sapiens]
gi|111598490|gb|AAH82607.1| Rbm39 protein [Mus musculus]
gi|119596570|gb|EAW76164.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_d [Homo
sapiens]
gi|149030835|gb|EDL85862.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_g [Rattus
norvegicus]
Length = 367
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 88 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 147
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 148 KKALEQLNGFELAGRPMKV 166
>gi|430811846|emb|CCJ30702.1| unnamed protein product [Pneumocystis jirovecii]
Length = 486
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 41 SNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S++P R+YVG+I F L ED +RQ F PFG ++ + + +P T + +G+ FV+Y P A
Sbjct: 221 SDAPFHRLYVGNIHFNLTEDDLRQIFEPFGELEFVQLQKEPDTGRSRGYGFVQYRDPAQA 280
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LE+MNG L GR I+V
Sbjct: 281 RDALEKMNGFELAGRAIRV 299
>gi|190402270|gb|ACE77680.1| RNA binding motif protein 39 isoform a (predicted) [Sorex araneus]
Length = 435
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|31873732|emb|CAD97833.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 88 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 147
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 148 KKALEQLNGFELAGRPMKV 166
>gi|449265754|gb|EMC76900.1| RNA-binding protein 39, partial [Columba livia]
Length = 423
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 146 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 205
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 206 KKALEQLNGFELAGRPMKV 224
>gi|126291195|ref|XP_001371651.1| PREDICTED: RNA-binding protein 39 isoform 1 [Monodelphis domestica]
Length = 524
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|224077247|ref|XP_002192236.1| PREDICTED: RNA-binding protein 39 [Taeniopygia guttata]
Length = 522
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|432101442|gb|ELK29624.1| RNA-binding protein 39 [Myotis davidii]
Length = 491
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 223 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 282
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 283 KKALEQLNGFELAGRPMKV 301
>gi|296199709|ref|XP_002747282.1| PREDICTED: RNA-binding protein 39 isoform 5 [Callithrix jacchus]
Length = 504
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 219 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 278
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 279 KKALEQLNGFELAGRPMKV 297
>gi|194386036|dbj|BAG59582.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 218 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 277
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 278 KKALEQLNGFELAGRPMKV 296
>gi|118100450|ref|XP_425690.2| PREDICTED: RNA-binding protein 39 [Gallus gallus]
gi|363741409|ref|XP_003642487.1| PREDICTED: RNA-binding protein 39-like [Gallus gallus]
Length = 522
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|189237575|ref|XP_974855.2| PREDICTED: similar to splicing factor [Tribolium castaneum]
Length = 501
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + E A
Sbjct: 236 NMTGPMRLYVGSLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFRNCEDA 295
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 296 KKALEQLNGFELAGRPMKV 314
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V +S ++ + + F G ++ + + T++ KG A++E+ PE+ L+L +
Sbjct: 145 VFVMQLSQRIRARDLEEFFSSVGKVRDVRLIVCNKTRRFKGIAYIEFKDPESVTLAL-GL 203
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G I V + R N S+ + + + R+YV S+H ++TE+ ++
Sbjct: 204 SGQKLLGVPIIVQHTQAEKNRMGN-----SMPNLMPKNMTGPMRLYVGSLHFNITEDMLR 258
>gi|281346065|gb|EFB21649.1| hypothetical protein PANDA_004543 [Ailuropoda melanoleuca]
Length = 497
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 212 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 271
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 272 KKALEQLNGFELAGRPMKV 290
>gi|330688445|ref|NP_001193433.1| RNA-binding protein 39 [Bos taurus]
Length = 530
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 251 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 310
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 311 KKALEQLNGFELAGRPMKV 329
>gi|193785136|dbj|BAG54289.1| unnamed protein product [Homo sapiens]
Length = 506
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 221 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 280
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 281 KKALEQLNGFELAGRPMKV 299
>gi|270007747|gb|EFA04195.1| hypothetical protein TcasGA2_TC014444 [Tribolium castaneum]
Length = 522
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + E A
Sbjct: 257 NMTGPMRLYVGSLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFRNCEDA 316
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 317 KKALEQLNGFELAGRPMKV 335
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V +S ++ + + F G ++ + + T++ KG A++E+ PE+ L+L +
Sbjct: 166 VFVMQLSQRIRARDLEEFFSSVGKVRDVRLIVCNKTRRFKGIAYIEFKDPESVTLAL-GL 224
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G I V + R N S+ + + + R+YV S+H ++TE+ ++
Sbjct: 225 SGQKLLGVPIIVQHTQAEKNRMGN-----SMPNLMPKNMTGPMRLYVGSLHFNITEDMLR 279
>gi|13278367|gb|AAH04000.1| Rbm39 protein [Mus musculus]
Length = 429
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 144 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 203
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 204 KKALEQLNGFELAGRPMKV 222
>gi|88682991|gb|AAI05542.1| RBM39 protein [Bos taurus]
Length = 528
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 249 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 308
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 309 KKALEQLNGFELAGRPMKV 327
>gi|35493811|ref|NP_909122.1| RNA-binding protein 39 isoform a [Homo sapiens]
gi|281182530|ref|NP_001162566.1| RNA-binding protein 39 [Papio anubis]
gi|284004921|ref|NP_001164806.1| RNA-binding protein 39 [Oryctolagus cuniculus]
gi|149733225|ref|XP_001501869.1| PREDICTED: RNA-binding protein 39 isoform 1 [Equus caballus]
gi|296199703|ref|XP_002747279.1| PREDICTED: RNA-binding protein 39 isoform 2 [Callithrix jacchus]
gi|332858224|ref|XP_003316931.1| PREDICTED: uncharacterized protein LOC458443 isoform 1 [Pan
troglodytes]
gi|335304742|ref|XP_003360012.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|344279919|ref|XP_003411733.1| PREDICTED: RNA-binding protein 39 isoform 1 [Loxodonta africana]
gi|345789986|ref|XP_864959.2| PREDICTED: RNA-binding protein 39 isoform 3 [Canis lupus
familiaris]
gi|354477982|ref|XP_003501196.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Cricetulus
griseus]
gi|397523808|ref|XP_003831910.1| PREDICTED: RNA-binding protein 39 [Pan paniscus]
gi|426391507|ref|XP_004062114.1| PREDICTED: RNA-binding protein 39 isoform 1 [Gorilla gorilla
gorilla]
gi|28201880|sp|Q14498.2|RBM39_HUMAN RecName: Full=RNA-binding protein 39; AltName: Full=Hepatocellular
carcinoma protein 1; AltName: Full=RNA-binding motif
protein 39; AltName: Full=RNA-binding region-containing
protein 2; AltName: Full=Splicing factor HCC1
gi|405194|gb|AAA16347.1| splicing factor [Homo sapiens]
gi|119596565|gb|EAW76159.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|119596567|gb|EAW76161.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|146327034|gb|AAI41836.1| RNA binding motif protein 39 [Homo sapiens]
gi|164623752|gb|ABY64678.1| RNA binding motif protein 39, isoform 1 (predicted) [Papio anubis]
gi|165971473|gb|AAI58173.1| RNA binding motif protein 39 [Homo sapiens]
gi|166831598|gb|ABY90123.1| RNA binding motif protein 39 isoform a (predicted) [Callithrix
jacchus]
gi|169731519|gb|ACA64891.1| RNA binding motif protein 39 isoform a (predicted) [Callicebus
moloch]
gi|197215647|gb|ACH53039.1| RNA binding motif protein 39 isoform a (predicted) [Otolemur
garnettii]
gi|217038339|gb|ACJ76632.1| RNA binding motif protein 39 isoform a (predicted) [Oryctolagus
cuniculus]
gi|229368730|gb|ACQ63013.1| RNA binding motif protein 39 isoform a (predicted) [Dasypus
novemcinctus]
gi|351702535|gb|EHB05454.1| RNA-binding protein 39 [Heterocephalus glaber]
gi|380783277|gb|AFE63514.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|383408125|gb|AFH27276.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|384939254|gb|AFI33232.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|410218746|gb|JAA06592.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255434|gb|JAA15684.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292900|gb|JAA25050.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292904|gb|JAA25052.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350859|gb|JAA42033.1| RNA binding motif protein 39 [Pan troglodytes]
gi|440902514|gb|ELR53299.1| RNA-binding protein 39 [Bos grunniens mutus]
Length = 530
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|417411216|gb|JAA52053.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 499
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 214 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 273
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 274 KKALEQLNGFELAGRPMKV 292
>gi|194384132|dbj|BAG64839.1| unnamed protein product [Homo sapiens]
Length = 521
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 236 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 295
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 296 KKALEQLNGFELAGRPMKV 314
>gi|349604477|gb|AEQ00017.1| RNA-binding protein 39-like protein, partial [Equus caballus]
Length = 374
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 228 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 287
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 288 KKALEQLNGFELAGRPMKV 306
>gi|126291198|ref|XP_001371677.1| PREDICTED: RNA-binding protein 39 isoform 2 [Monodelphis domestica]
Length = 533
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|4757926|ref|NP_004893.1| RNA-binding protein 39 isoform b [Homo sapiens]
gi|197097940|ref|NP_001125339.1| RNA-binding protein 39 [Pongo abelii]
gi|149733223|ref|XP_001501876.1| PREDICTED: RNA-binding protein 39 isoform 2 [Equus caballus]
gi|194044529|ref|XP_001925282.1| PREDICTED: RNA-binding protein 39 isoform 2 [Sus scrofa]
gi|296199701|ref|XP_002747278.1| PREDICTED: RNA-binding protein 39 isoform 1 [Callithrix jacchus]
gi|301762104|ref|XP_002916459.1| PREDICTED: RNA-binding protein 39-like [Ailuropoda melanoleuca]
gi|332858226|ref|XP_514808.3| PREDICTED: uncharacterized protein LOC458443 isoform 5 [Pan
troglodytes]
gi|344279921|ref|XP_003411734.1| PREDICTED: RNA-binding protein 39 isoform 2 [Loxodonta africana]
gi|345789988|ref|XP_865124.2| PREDICTED: RNA-binding protein 39 isoform 12 [Canis lupus
familiaris]
gi|354477984|ref|XP_003501197.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Cricetulus
griseus]
gi|426391509|ref|XP_004062115.1| PREDICTED: RNA-binding protein 39 isoform 2 [Gorilla gorilla
gorilla]
gi|75070825|sp|Q5RC80.1|RBM39_PONAB RecName: Full=RNA-binding protein 39; AltName: Full=RNA-binding
motif protein 39
gi|405192|gb|AAA16346.1| splicing factor [Homo sapiens]
gi|55727753|emb|CAH90627.1| hypothetical protein [Pongo abelii]
gi|119596568|gb|EAW76162.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|119596569|gb|EAW76163.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|296480931|tpg|DAA23046.1| TPA: RNA binding motif protein 39 [Bos taurus]
gi|307686241|dbj|BAJ21051.1| RNA binding motif protein 39 [synthetic construct]
gi|344246681|gb|EGW02785.1| RNA-binding protein 39 [Cricetulus griseus]
gi|380783275|gb|AFE63513.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|383408127|gb|AFH27277.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|384939256|gb|AFI33233.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|410218748|gb|JAA06593.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255438|gb|JAA15686.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292902|gb|JAA25051.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350855|gb|JAA42031.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350863|gb|JAA42035.1| RNA binding motif protein 39 [Pan troglodytes]
Length = 524
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|399218373|emb|CCF75260.1| unnamed protein product [Babesia microti strain RI]
Length = 485
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 41 SNSPLRVYVGSISFEL---KEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
S PLR+YVG + L E+ +RQ F+PFG I S+ + DP T K KGFAF+EY
Sbjct: 215 SEMPLRLYVGGLVDSLVNISENELRQLFVPFGEILSVELHRDPFTGKPKGFAFIEYKRAS 274
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRI 151
A+ ++ M+G + GRNIKV+ N P A + ++ + K+ N +
Sbjct: 275 EAREAMLAMDGFEISGRNIKVNLT------SDNRPNAYTALNGLNNAQKITNDL 322
>gi|52545994|emb|CAH18281.2| hypothetical protein [Homo sapiens]
Length = 513
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 228 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 287
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 288 KKALEQLNGFELAGRPMKV 306
>gi|410953912|ref|XP_003983612.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39 [Felis
catus]
Length = 523
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 244 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 303
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 304 KKALEQLNGFELAGRPMKV 322
>gi|355784531|gb|EHH65382.1| RNA-binding motif protein 39 [Macaca fascicularis]
Length = 530
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|148674239|gb|EDL06186.1| RNA binding motif protein 39, isoform CRA_d [Mus musculus]
Length = 507
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 228 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 287
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 288 KKALEQLNGFELAGRPMKV 306
>gi|118403314|ref|NP_573505.2| RNA-binding protein 39 [Mus musculus]
gi|392346872|ref|XP_003749653.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Rattus
norvegicus]
gi|341941811|sp|Q8VH51.2|RBM39_MOUSE RecName: Full=RNA-binding protein 39; AltName: Full=Coactivator of
activating protein 1 and estrogen receptors;
Short=Coactivator of AP-1 and ERs; AltName:
Full=RNA-binding motif protein 39; AltName:
Full=RNA-binding region-containing protein 2; AltName:
Full=Transcription coactivator CAPER
gi|55991480|gb|AAH86645.1| RNA binding motif protein 39 [Mus musculus]
gi|74151058|dbj|BAE27657.1| unnamed protein product [Mus musculus]
gi|148674237|gb|EDL06184.1| RNA binding motif protein 39, isoform CRA_b [Mus musculus]
Length = 530
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|17063213|gb|AAL32373.1| transcription coactivator CAPER [Mus musculus]
Length = 530
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|74179655|dbj|BAE22477.1| unnamed protein product [Mus musculus]
Length = 521
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 242 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 302 KKALEQLNGFELAGRPMKV 320
>gi|417411155|gb|JAA52027.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 491
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 212 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 271
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 272 KKALEQLNGFELAGRPMKV 290
>gi|61557287|ref|NP_001013225.1| RNA-binding protein 39 [Rattus norvegicus]
gi|392346874|ref|XP_003749654.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Rattus
norvegicus]
gi|60552170|gb|AAH91394.1| RNA binding motif protein 39 [Rattus norvegicus]
gi|74196119|dbj|BAE32977.1| unnamed protein product [Mus musculus]
gi|149030834|gb|EDL85861.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Rattus
norvegicus]
Length = 524
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|326931688|ref|XP_003211958.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like
[Meleagris gallopavo]
Length = 571
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 294 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 353
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 354 KKALEQLNGFELAGRPMKV 372
>gi|301624539|ref|XP_002941556.1| PREDICTED: RNA-binding protein 39 [Xenopus (Silurana) tropicalis]
Length = 420
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I++I + +P T + KGF F+ + E A+ +
Sbjct: 245 GPMRLYVGSLHFNITEDMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRA 304
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 305 LEQLNGFELAGRPMKV 320
>gi|242015973|ref|XP_002428613.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
gi|212513276|gb|EEB15875.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
Length = 593
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%)
Query: 32 VGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFV 91
P+ + P+R+YVGS+ F + ED +R F PFG I SI + DP T + KG+ F+
Sbjct: 252 TAPMMMPSDMRGPMRLYVGSLHFNITEDMLRGIFEPFGKIDSIQLIMDPETGRSKGYGFI 311
Query: 92 EYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ + A+ +LEQ+NG L GR +KV
Sbjct: 312 TFHSADDAKKALEQLNGFELAGRPMKV 338
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 21 FLSTPLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP 80
+ +P + + +TP+ V+ +S ++ + + F G ++ + +
Sbjct: 144 YRKSPTFSKLPIDDLTPEERDQRT--VFCMQLSQRIRGRDLEEFFSSVGKVRDVKLITCN 201
Query: 81 ITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDE 140
T++ KG A+VE+ PE+ L++ + G L G I V + R N + +
Sbjct: 202 KTRRFKGIAYVEFKDPESVPLAM-GLTGQKLLGIPISVQPTQAEKNRQGNSTAPMMMPSD 260
Query: 141 ITEEAKLYNRIYVASIHPDLTEEDIK 166
+ R+YV S+H ++TE+ ++
Sbjct: 261 MRGPM----RLYVGSLHFNITEDMLR 282
>gi|431894348|gb|ELK04148.1| RNA-binding protein 39 [Pteropus alecto]
Length = 601
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 322 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 381
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 382 KKALEQLNGFELAGRPMKV 400
>gi|119596572|gb|EAW76166.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_e [Homo
sapiens]
Length = 445
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|403281374|ref|XP_003932163.1| PREDICTED: RNA-binding protein 39 [Saimiri boliviensis boliviensis]
Length = 502
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|332249061|ref|XP_003273679.1| PREDICTED: RNA-binding protein 39 [Nomascus leucogenys]
Length = 432
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 153 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 212
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 213 KKALEQLNGFELAGRPMKV 231
>gi|119596573|gb|EAW76167.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Homo
sapiens]
Length = 423
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>gi|388852481|emb|CCF53883.1| related to RNA-binding region containing protein 2 [Ustilago
hordei]
Length = 678
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GP P N+ R+YVGS+ F L ++ ++ F PFG I+ +++ +P T K KGF F++
Sbjct: 419 GPNMP----NTEARLYVGSLHFSLTDENVKAVFEPFGEIEYVDLHREPGTGKSKGFCFIQ 474
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ E A+ +LEQMNG L GR I+V
Sbjct: 475 FKHAEDAKKALEQMNGFELAGRAIRV 500
>gi|327271618|ref|XP_003220584.1| PREDICTED: RNA-binding protein 39-like [Anolis carolinensis]
Length = 578
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 301 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 360
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 361 KKALEQLNGFELAGRPMKV 379
>gi|158429066|pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 81
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 82 KKALEQLNGFELAGRPMKV 100
>gi|170284570|gb|AAI61141.1| rbm23 protein [Xenopus (Silurana) tropicalis]
Length = 272
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I++I + +P T + KGF F+ + E A+ +
Sbjct: 97 GPMRLYVGSLHFNITEDMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRA 156
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 157 LEQLNGFELAGRPMKV 172
>gi|357612395|gb|EHJ67964.1| putative RNA-binding region-containing protein [Danaus plexippus]
Length = 536
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 31 QVGPITPDV---NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
+VG P++ SN P R+YVGS+ F + ED +R F PFG I I + DP T K KG
Sbjct: 263 RVGNTLPNLAPKTSNGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPDTGKSKG 322
Query: 88 FAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ F+ + A+ ++EQ+NG L GR +KV
Sbjct: 323 YGFLTFHHATDAKKAMEQLNGFELAGRPMKV 353
>gi|324510042|gb|ADY44204.1| Nucleolysin TIAR [Ascaris suum]
Length = 367
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P V+++ V+VG ++ E+ + ++ AF +G I + DP T K KG+ FV +
Sbjct: 126 PKVDTSKHFHVFVGDLATEIDNNALKAAFAAYGEISEAKVIRDPQTMKSKGYGFVSFPSK 185
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYN-RIYVAS 155
E+A+ ++ MNG ++G R I+ ++ + + DE+ + N +YV +
Sbjct: 186 ESAEKAIAGMNGQLIGRRQIRTNWASRKPASAEEAHTKEQTFDEVFNATRADNTSVYVGN 245
Query: 156 IHPDLTEEDIK 166
+H TEED++
Sbjct: 246 VHSSTTEEDLR 256
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG++ E+ +R+AF G I + + K +G+AFV Y EAA ++ QM
Sbjct: 241 VYVGNVHSSTTEEDLREAFASIGAISEVRIF------KQQGYAFVRYATKEAATRAIMQM 294
Query: 107 NGVMLGGRNIKVHF 120
NG + G+NIK +
Sbjct: 295 NGKEINGQNIKCSW 308
>gi|426241414|ref|XP_004014586.1| PREDICTED: RNA-binding protein 39 isoform 7 [Ovis aries]
Length = 367
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 88 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 147
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 148 KKALEQLNGFELTGRPMKV 166
>gi|426241412|ref|XP_004014585.1| PREDICTED: RNA-binding protein 39 isoform 6 [Ovis aries]
gi|426241416|ref|XP_004014587.1| PREDICTED: RNA-binding protein 39 isoform 8 [Ovis aries]
Length = 373
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 88 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 147
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 148 KKALEQLNGFELTGRPMKV 166
>gi|426241408|ref|XP_004014583.1| PREDICTED: RNA-binding protein 39 isoform 4 [Ovis aries]
Length = 508
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 223 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 282
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 283 KKALEQLNGFELTGRPMKV 301
>gi|426241406|ref|XP_004014582.1| PREDICTED: RNA-binding protein 39 isoform 3 [Ovis aries]
Length = 502
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 223 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 282
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 283 KKALEQLNGFELTGRPMKV 301
>gi|328859425|gb|EGG08534.1| hypothetical protein MELLADRAFT_84729 [Melampsora larici-populina
98AG31]
Length = 649
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GP P NS R+YVGS++F L +D +RQ F PFG I+ +++ D IT K KG+AFV+
Sbjct: 425 GPNDP----NSYARLYVGSLNFNLTDDDLRQVFQPFGDIEYVDLHRDQITGKSKGYAFVQ 480
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ A+ ++E+MNG L GR ++V
Sbjct: 481 FKNMHDAKNAMEKMNGFQLAGRALRV 506
>gi|426241410|ref|XP_004014584.1| PREDICTED: RNA-binding protein 39 isoform 5 [Ovis aries]
Length = 530
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 251 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 310
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 311 KKALEQLNGFELTGRPMKV 329
>gi|426241402|ref|XP_004014580.1| PREDICTED: RNA-binding protein 39 isoform 1 [Ovis aries]
Length = 530
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELTGRPMKV 323
>gi|59858555|ref|NP_001012304.1| RNA-binding protein 39 [Danio rerio]
gi|27882534|gb|AAH44487.1| RNA binding motif protein 39a [Danio rerio]
gi|182892014|gb|AAI65689.1| Rbm39a protein [Danio rerio]
Length = 523
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I SI + D T + KG+ F+ + E A
Sbjct: 241 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECA 300
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 301 KKALEQLNGFELAGRPMKV 319
>gi|426241404|ref|XP_004014581.1| PREDICTED: RNA-binding protein 39 isoform 2 [Ovis aries]
Length = 524
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELTGRPMKV 323
>gi|148226721|ref|NP_001086950.1| RNA binding motif protein 39 [Xenopus laevis]
gi|50414893|gb|AAH77813.1| Rnpc2-prov protein [Xenopus laevis]
Length = 540
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+ +
Sbjct: 247 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 306
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 307 LEQLNGFELAGRPMKV 322
>gi|62857615|ref|NP_001016788.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|62201342|gb|AAH93451.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|89273890|emb|CAJ83908.1| RNA-binding region (RNP1, RRM) containing 2 [Xenopus (Silurana)
tropicalis]
Length = 542
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+ +
Sbjct: 249 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 308
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 309 LEQLNGFELAGRPMKV 324
>gi|260834973|ref|XP_002612484.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
gi|229297861|gb|EEN68493.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
Length = 466
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 139 GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLMKDSETGRSKGYGFITFHDAECA 198
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
+ +LEQ+NG L GR +KV V S+ A S +D
Sbjct: 199 KKALEQLNGFELAGRPMKVG----HVTERSDAGAATSFLD 234
Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V +S ++ + F G ++ + + D +++HKG A+ E+ +++
Sbjct: 49 VFVMQLSQRVRPKDLEDFFSSVGKVREVRLIADRNSRRHKGIAYCEFTDASCVPMAIGLT 108
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
N +LG P + + +A + + + + R+YV S+H ++TE+ ++
Sbjct: 109 NQKLLG-------VPIIVQASQAEKNRAAANSQNLQKGSSGPMRLYVGSLHFNITEDMLR 161
>gi|147900472|ref|NP_001086350.1| MGC81970 protein [Xenopus laevis]
gi|49522239|gb|AAH75146.1| MGC81970 protein [Xenopus laevis]
Length = 512
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+ +
Sbjct: 221 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 280
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 281 LEQLNGFELAGRPMKV 296
>gi|209155056|gb|ACI33760.1| RNA-binding protein 39 [Salmo salar]
Length = 535
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+ +L
Sbjct: 252 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETARSKGYGFISFADAECAKKAL 311
Query: 104 EQMNGVMLGGRNIKV 118
EQ+NG L GR +KV
Sbjct: 312 EQLNGFELAGRPMKV 326
>gi|118788821|ref|XP_317010.3| AGAP008433-PA [Anopheles gambiae str. PEST]
gi|116122929|gb|EAA12873.4| AGAP008433-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P+ P N + P+R+YVGS+ F + ED + F PFG I +I + D T + KG+ F+ +
Sbjct: 258 PVAPPKNPSGPMRLYVGSLHFNITEDMLNGIFEPFGKIDNIQLIMDADTGRSKGYGFITF 317
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKV 118
+ A+ +LEQ+NG L GR +KV
Sbjct: 318 HNADDAKKALEQLNGFELAGRPMKV 342
>gi|380012525|ref|XP_003690330.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like [Apis
florea]
Length = 506
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 243 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPXTGRSKGYGFLTFRNADDAKKA 302
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 303 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 335
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 149 VFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 207
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 208 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 257
Query: 162 EEDIK 166
E+ ++
Sbjct: 258 EDMLR 262
>gi|410899827|ref|XP_003963398.1| PREDICTED: RNA-binding protein 39-like [Takifugu rubripes]
Length = 500
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + E+ +R F PFG I+ I + D T + KG+ F+ + E A
Sbjct: 224 GSSGPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECA 283
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
+ +LEQ+NG L GR +KV V S+ A S++D
Sbjct: 284 KKALEQLNGFELAGRPMKVG----HVTERSDSSTASSILD 319
>gi|195155759|ref|XP_002018768.1| GL25979 [Drosophila persimilis]
gi|194114921|gb|EDW36964.1| GL25979 [Drosophila persimilis]
Length = 289
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F++ E+ +R F PFG I +I + D T + KG+ F+ Y E A+ +
Sbjct: 27 GPMRLYVGSLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKA 86
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 87 LEQLNGFELAGRPMKV 102
>gi|47223170|emb|CAG11305.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + E+ +R F PFG I+ I + D T + KG+ F+ + E A
Sbjct: 239 GSSGPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECA 298
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
+ +LEQ+NG L GR +KV V S+ A S++D
Sbjct: 299 KKALEQLNGFELAGRPMKVG----HVTERSDSSTASSILD 334
>gi|24582417|ref|NP_723245.1| CG11266, isoform C [Drosophila melanogaster]
gi|24582419|ref|NP_723246.1| CG11266, isoform D [Drosophila melanogaster]
gi|24582421|ref|NP_723247.1| CG11266, isoform F [Drosophila melanogaster]
gi|24582423|ref|NP_723248.1| CG11266, isoform G [Drosophila melanogaster]
gi|45550943|ref|NP_723244.2| CG11266, isoform E [Drosophila melanogaster]
gi|22945836|gb|AAN10616.1| CG11266, isoform C [Drosophila melanogaster]
gi|22945837|gb|AAN10617.1| CG11266, isoform D [Drosophila melanogaster]
gi|22945838|gb|AAN10618.1| CG11266, isoform F [Drosophila melanogaster]
gi|22945839|gb|AAN10619.1| CG11266, isoform G [Drosophila melanogaster]
gi|45445036|gb|AAN10615.2| CG11266, isoform E [Drosophila melanogaster]
Length = 287
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 29 LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
L+ P + P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+
Sbjct: 12 LQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGY 71
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
F+ Y + A+ +LEQ+NG L GR +KV
Sbjct: 72 GFITYHNADDAKKALEQLNGFELAGRLMKV 101
>gi|307195359|gb|EFN77277.1| RNA-binding protein 39 [Harpegnathos saltator]
Length = 370
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 107 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 166
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 167 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 199
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 13 VFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 71
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 72 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 121
Query: 162 EEDIK 166
E+ ++
Sbjct: 122 EDMLR 126
>gi|328781105|ref|XP_624668.3| PREDICTED: RNA-binding protein 39-like [Apis mellifera]
Length = 506
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 243 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 302
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 303 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 335
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 149 VFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 207
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 208 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 257
Query: 162 EEDIK 166
E+ ++
Sbjct: 258 EDMLR 262
>gi|432858816|ref|XP_004068953.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Oryzias latipes]
Length = 529
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I++I + D T + KG+ F+ + E A+ +
Sbjct: 250 GPMRLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKA 309
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 310 LEQLNGFELAGRPMKV 325
>gi|340718898|ref|XP_003397899.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus
terrestris]
Length = 520
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 257 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 316
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 317 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 349
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 163 VFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 221
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 222 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 271
Query: 162 EEDIK 166
E+ ++
Sbjct: 272 EDMLR 276
>gi|156363387|ref|XP_001626026.1| predicted protein [Nematostella vectensis]
gi|156212886|gb|EDO33926.1| predicted protein [Nematostella vectensis]
Length = 468
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P R+YVGS+ F + E ++ F PFG + S+ + +D T + KG+ FV++ EAA+ ++
Sbjct: 214 PTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAM 273
Query: 104 EQMNGVMLGGRNIKV 118
EQMNG L GR +K+
Sbjct: 274 EQMNGFELAGRPLKI 288
>gi|383864352|ref|XP_003707643.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Megachile
rotundata]
Length = 530
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 267 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 326
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 327 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 359
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 173 VFCMQLSQRIRARDLEDFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 231
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 232 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 281
Query: 162 EEDIK 166
E+ ++
Sbjct: 282 EDMLR 286
>gi|350410161|ref|XP_003488967.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus impatiens]
Length = 508
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 245 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 304
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 305 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 337
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 151 VFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 209
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 210 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 259
Query: 162 EEDIK 166
E+ ++
Sbjct: 260 EDMLR 264
>gi|340718900|ref|XP_003397900.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus
terrestris]
Length = 508
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 245 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 304
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 305 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 337
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 151 VFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 209
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 210 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 259
Query: 162 EEDIK 166
E+ ++
Sbjct: 260 EDMLR 264
>gi|350410158|ref|XP_003488966.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus impatiens]
Length = 532
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 269 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 328
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 329 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 361
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 175 VFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 233
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 234 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 283
Query: 162 EEDIK 166
E+ ++
Sbjct: 284 EDMLR 288
>gi|62122939|ref|NP_001014392.1| RNA binding motif protein 39b [Danio rerio]
gi|61402832|gb|AAH91794.1| RNA binding motif protein 39b [Danio rerio]
Length = 539
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P+R+YVGS+ F + ED +R F PFG I+ I + D T + KG+ F+ + E A+ +L
Sbjct: 263 PMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKAL 322
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
EQ+NG L GR +KV V S+ A S +D
Sbjct: 323 EQLNGFELAGRPMKVG----HVTERSDASSASSFLD 354
>gi|383864354|ref|XP_003707644.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Megachile
rotundata]
Length = 507
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 244 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 303
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 304 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 336
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 150 VFCMQLSQRIRARDLEDFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 208
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 209 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 258
Query: 162 EEDIK 166
E+ ++
Sbjct: 259 EDMLR 263
>gi|313225726|emb|CBY07200.1| unnamed protein product [Oikopleura dioica]
Length = 247
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y GS+S++ E+ I++ F +G I S+ MS+D + HKGFAFVEY EAA L+L++
Sbjct: 30 RLYAGSLSYDTTEEEIKELFESYGEITSLTMSYDVEKKHHKGFAFVEYATAEAAALALKK 89
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
+ GV L R +K +GRP + Q+++ ++ + + R+Y+ ++ D++ E I
Sbjct: 90 LKGVTLNDRRMK-------LGRPQAALRYQTLLAQLEMDGRASARVYLGNLPKDVSLEKI 142
Query: 166 K 166
+
Sbjct: 143 E 143
>gi|307180960|gb|EFN68748.1| RNA-binding protein 39 [Camponotus floridanus]
Length = 529
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 266 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 325
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 326 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 358
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 172 VFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 230
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 231 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 280
Query: 162 EEDIK 166
E+ ++
Sbjct: 281 EDMLR 285
>gi|71003261|ref|XP_756311.1| hypothetical protein UM00164.1 [Ustilago maydis 521]
gi|46096316|gb|EAK81549.1| hypothetical protein UM00164.1 [Ustilago maydis 521]
Length = 640
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GP P N+ R+YVGS+ F L ++ ++ F PFG I+ +++ +P T K KGF F++
Sbjct: 394 GPNMP----NTEARLYVGSLHFSLTDEAVKTVFEPFGEIEYVDLHREPETGKSKGFCFIQ 449
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ E A+ +LEQMNG +L R I+V
Sbjct: 450 FKKAEDAKKALEQMNGFVLADRAIRV 475
>gi|313212200|emb|CBY36213.1| unnamed protein product [Oikopleura dioica]
Length = 247
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y GS+S++ E+ I++ F +G I S+ MS+D + HKGFAFVEY EAA L+L++
Sbjct: 30 RLYAGSLSYDTTEEEIKELFESYGEITSLTMSYDVEKKHHKGFAFVEYATAEAAALALKK 89
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
+ GV L R +K +GRP + Q+++ ++ + + R+Y+ ++ D++ E I
Sbjct: 90 LKGVTLNDRRMK-------LGRPQAALRYQTLLAQLEMDGRASARVYLGNLPKDVSLEKI 142
Query: 166 K 166
+
Sbjct: 143 E 143
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F++ E+ +R F PFG I +I + D T + KG+ F+ Y E A+ +
Sbjct: 363 GPMRLYVGSLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKA 422
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 423 LEQLNGFELAGRPMKV 438
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E++ PE+ L+L +
Sbjct: 269 VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFEDPESVALAL-GL 327
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMP---QAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
+G L G I V + R N Q +S + + R+YV S+H D+TEE
Sbjct: 328 SGQRLLGVPIMVQHTQAEKNRLQNATPAFQPKSHVGPM--------RLYVGSLHFDITEE 379
Query: 164 DIK 166
++
Sbjct: 380 MLR 382
>gi|301101828|ref|XP_002900002.1| Poly(U)-binding-splicing factor PUF60, putative [Phytophthora
infestans T30-4]
gi|262102577|gb|EEY60629.1| Poly(U)-binding-splicing factor PUF60, putative [Phytophthora
infestans T30-4]
Length = 444
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+G++ ++LKE+ I F PFG I+SI++S +P + KGF F+EY+ AA+ +++
Sbjct: 119 RLYIGNLYYDLKEEDISNVFAPFGTIRSIDLSLEPGASRSKGFCFLEYEDVLAAESAVQV 178
Query: 106 MNGVMLGGRNIKVHFPHV-QVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
+NG L R I+V PH ++ Q I + + IYVA++ +L +
Sbjct: 179 LNGTPLANRAIRVGRPHRGNTNSNDSLSIGQEAIKNVPTKC-----IYVANVRVELNSQH 233
Query: 165 IK 166
++
Sbjct: 234 LE 235
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSW-DPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+YV ++ EL + F PFG I S M+ P+ H+G+ F+ + A +++
Sbjct: 220 IYVANVRVELNSQHLESIFSPFGAIHSCVMTAVSPLESGHRGYGFMRFVEESCALSAIQH 279
Query: 106 MNGVMLGGRNIKV 118
MNG L G+ +KV
Sbjct: 280 MNGFELAGQALKV 292
>gi|332019312|gb|EGI59819.1| RNA-binding protein 39 [Acromyrmex echinatior]
Length = 528
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + DP T + KG+ F+ + + A+ +
Sbjct: 265 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKA 324
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 325 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 357
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A+VE+ PE+ L+L +
Sbjct: 171 VFCMQLSQRIRARDLEEFFSSVGKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GL 229
Query: 107 NGVMLGGRNIKVHFPHVQVGR-----PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+G L G I V + R P+ MP+ Q+ R+YV S+H ++T
Sbjct: 230 SGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTG----------PMRLYVGSLHFNIT 279
Query: 162 EEDIK 166
E+ ++
Sbjct: 280 EDMLR 284
>gi|195116809|ref|XP_002002944.1| GI10246 [Drosophila mojavensis]
gi|193913519|gb|EDW12386.1| GI10246 [Drosophila mojavensis]
Length = 617
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P P ++ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ Y
Sbjct: 348 PFQPKAHT-GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITY 406
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKV 118
+ A+ +LEQ+NG L GR +KV
Sbjct: 407 HNADDAKKALEQLNGFELAGRPMKV 431
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E++ PE+ L+L +
Sbjct: 262 VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFEDPESVALAL-GL 320
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMP---QAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
+G L G I V + R + P Q ++ + R+YV S+H ++TE+
Sbjct: 321 SGQRLLGVPIMVQHTQAEKNRLQSAPPPFQPKAHTGPM--------RLYVGSLHFNITED 372
Query: 164 DIK 166
++
Sbjct: 373 MLR 375
>gi|19920866|ref|NP_609095.1| CG11266, isoform B [Drosophila melanogaster]
gi|24582412|ref|NP_723243.1| CG11266, isoform A [Drosophila melanogaster]
gi|7297213|gb|AAF52478.1| CG11266, isoform A [Drosophila melanogaster]
gi|15292031|gb|AAK93284.1| LD35730p [Drosophila melanogaster]
gi|22945834|gb|AAN10614.1| CG11266, isoform B [Drosophila melanogaster]
gi|220946034|gb|ACL85560.1| CG11266-PA [synthetic construct]
gi|220955788|gb|ACL90437.1| CG11266-PA [synthetic construct]
Length = 594
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 29 LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
L+ P + P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+
Sbjct: 319 LQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGY 378
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
F+ Y + A+ +LEQ+NG L GR +KV
Sbjct: 379 GFITYHNADDAKKALEQLNGFELAGRLMKV 408
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E+D PE+ L+L +
Sbjct: 239 VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALAL-GL 297
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G I V + R N A + + R+YV S+H ++TE+ ++
Sbjct: 298 SGQRLLGVPIMVQHTQAEKNRLQN---AAPAFQPKSHTGPM--RLYVGSLHFNITEDMLR 352
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+++ V+VG +S E+ +R+AF+PFG + + D T K KG+ FV Y E
Sbjct: 125 IDTTRHFHVFVGDLSSEVDNQKLREAFIPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREE 184
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVG---RPSNMPQAQSVIDEITEEAKLYN-RIYVA 154
A+ ++EQMNG LG R I+ ++ + G +PSN + DE+ + N +YV
Sbjct: 185 AERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSNYN--EKSYDEVYNQTSGDNTSVYVG 242
Query: 155 SIHPDLTEEDIK 166
+I +LTE++I+
Sbjct: 243 NI-ANLTEDEIR 253
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L ED IRQAF +G I + + K +G+AFV+++ AA ++ +M
Sbjct: 239 VYVGNIA-NLTEDEIRQAFASYGRISEVRIF------KMQGYAFVKFENKNAAAKAITEM 291
Query: 107 NGVMLGGRNIK 117
N +GG+ ++
Sbjct: 292 NNQDVGGQMVR 302
>gi|348503003|ref|XP_003439056.1| PREDICTED: RNA-binding protein 39-like [Oreochromis niloticus]
Length = 498
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + E+ +R F PFG I+ I + D T + KG+ F+ + E A
Sbjct: 222 GSSGPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECA 281
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 282 KKALEQLNGFELAGRPMKV 300
>gi|221111756|ref|XP_002159647.1| PREDICTED: RNA-binding protein 39-like [Hydra magnipapillata]
Length = 528
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V P+++YVGS+ + + E +R F PFG ++S+ + +D T + KGF FV + A
Sbjct: 274 VKPQGPMKLYVGSLHYNITEPMLRAIFEPFGTVESVQLQYDSETNRSKGFGFVNFREAGA 333
Query: 99 AQLSLEQMNGVMLGGRNIKVH 119
A+ ++EQMNG L GR +KV+
Sbjct: 334 AKRAMEQMNGFELAGRPMKVN 354
>gi|432858814|ref|XP_004068952.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Oryzias latipes]
Length = 502
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I++I + D T + KG+ F+ + E A+ +
Sbjct: 223 GPMRLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKA 282
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 283 LEQLNGFELAGRPMKV 298
>gi|194758325|ref|XP_001961412.1| GF14957 [Drosophila ananassae]
gi|190615109|gb|EDV30633.1| GF14957 [Drosophila ananassae]
Length = 594
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 29 LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
L+ P + P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+
Sbjct: 319 LQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGY 378
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
F+ Y + A+ +LEQ+NG L GR +KV
Sbjct: 379 GFITYHNADDAKKALEQLNGFELAGRLMKV 408
Score = 39.3 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E++ PE+ L+L +
Sbjct: 239 VFCIQLSQRVRARDLEEFFSSVGKVRDVRLILCNKTKRFKGIAYIEFEDPESVALAL-GL 297
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G I V + R N A + + R+YV S+H ++TE+ ++
Sbjct: 298 SGQRLLGVPIMVQHTQAEKNRLQN---AAPAFQPKSHTGPM--RLYVGSLHFNITEDMLR 352
>gi|194862772|ref|XP_001970115.1| GG10454 [Drosophila erecta]
gi|190661982|gb|EDV59174.1| GG10454 [Drosophila erecta]
Length = 593
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 29 LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
L+ P + P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+
Sbjct: 318 LQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGY 377
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
F+ Y + A+ +LEQ+NG L GR +KV
Sbjct: 378 GFITYHNADDAKKALEQLNGFELAGRLMKV 407
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E++ PE+ L+L +
Sbjct: 238 VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFEDPESVALAL-GL 296
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G I V + R N A + + R+YV S+H ++TE+ ++
Sbjct: 297 SGQRLLGVPIMVQHTQAEKNRLQN---AAPAFQPKSHTGPM--RLYVGSLHFNITEDMLR 351
>gi|195471585|ref|XP_002088083.1| GE14328 [Drosophila yakuba]
gi|194174184|gb|EDW87795.1| GE14328 [Drosophila yakuba]
Length = 590
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 29 LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
L+ P + P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+
Sbjct: 315 LQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGY 374
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
F+ Y + A+ +LEQ+NG L GR +KV
Sbjct: 375 GFITYHNADDAKKALEQLNGFELAGRLMKV 404
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E++ PE+ L+L +
Sbjct: 235 VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFEDPESVALAL-GL 293
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G I V + R N A + + R+YV S+H ++TE+ ++
Sbjct: 294 SGQRLLGVPIMVQHTQAEKNRLQN---AAPAFQPKSHTGPM--RLYVGSLHFNITEDMLR 348
>gi|195577213|ref|XP_002078467.1| GD23448 [Drosophila simulans]
gi|194190476|gb|EDX04052.1| GD23448 [Drosophila simulans]
Length = 608
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ Y + A+ +
Sbjct: 347 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKA 406
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 407 LEQLNGFELAGRLMKV 422
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E+D PE+ L+L +
Sbjct: 253 VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALAL-GL 311
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G I V + R N A + + R+YV S+H ++TE+ ++
Sbjct: 312 SGQRLLGVPIMVQHTQAEKNRLQN---ATPAFQPKSHTGPM--RLYVGSLHFNITEDMLR 366
>gi|373854326|ref|ZP_09597124.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391231688|ref|ZP_10267894.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
gi|372472193|gb|EHP32205.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391221349|gb|EIP99769.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
Length = 122
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SNS L YVG++SF+ ED +R AF FG + + ++ D +T + +GFAFV PE A+
Sbjct: 2 SNSKL--YVGNMSFKTSEDELRSAFGQFGNVTDVYVAMDKMTGRPRGFAFVTMSTPEEAK 59
Query: 101 LSLEQMNGVMLGGRNIKVH 119
++ E++NGV LGGR + V+
Sbjct: 60 IAAEKLNGVDLGGRALTVN 78
>gi|393218616|gb|EJD04104.1| splicing factor, CC1-like protein [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVGS+ F L E I+Q F PFG + +++ D T + KG+AF+ Y E A+++LEQM
Sbjct: 240 LYVGSLHFNLTESDIKQVFEPFGELDFVDLHKDSATGRSKGYAFIHYKRAEDAKMALEQM 299
Query: 107 NGVMLGGRNIKVHFPH 122
G L GR ++V+ H
Sbjct: 300 EGFELAGRTLRVNTVH 315
>gi|195338839|ref|XP_002036031.1| GM16278 [Drosophila sechellia]
gi|194129911|gb|EDW51954.1| GM16278 [Drosophila sechellia]
Length = 596
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ Y + A+ +
Sbjct: 335 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKA 394
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 395 LEQLNGFELAGRLMKV 410
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E+D PE+ L+L +
Sbjct: 241 VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALAL-GL 299
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G I V + R N A + + R+YV S+H ++TE+ ++
Sbjct: 300 SGQRLLGVPIMVQHTQAEKNRLQN---ATPAFQPKSHTGPM--RLYVGSLHFNITEDMLR 354
>gi|321472566|gb|EFX83536.1| hypothetical protein DAPPUDRAFT_194972 [Daphnia pulex]
Length = 366
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N P+R+YVGS+ F + ED +R F PFG I+ + + D T + KG+ F+ + E A+
Sbjct: 107 NGPMRLYVGSLHFNITEDMLRSIFEPFGKIEHMQLMIDTETGRSKGYGFITFRNAEDAKK 166
Query: 102 SLEQMNGVMLGGRNIKVH 119
++EQ+NG L GR +K++
Sbjct: 167 AMEQLNGFELAGRPMKIN 184
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG +VE+ PE+ L++ +
Sbjct: 11 VFCMQLSQRIRARDLEEFFSAVGKVRDVRLITCNKTRRFKGLCYVEFAEPESVPLAI-AL 69
Query: 107 NGVMLGGRNIKVHFPHVQVGR--PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
G L G I V + R SNMP S + R+YV S+H ++TE+
Sbjct: 70 TGQRLCGVPIVVQPTQAEKNRLAGSNMPAMSS----FNKGPNGPMRLYVGSLHFNITEDM 125
Query: 165 IK 166
++
Sbjct: 126 LR 127
>gi|432865706|ref|XP_004070573.1| PREDICTED: RNA-binding protein 39-like [Oryzias latipes]
Length = 516
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + E+ +R F PFG I+ I + D T + KG+ F+ + E A
Sbjct: 241 GSAGPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECA 300
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 301 KKALEQLNGFELAGRPMKV 319
>gi|444728803|gb|ELW69245.1| putative RNA-binding protein 23 [Tupaia chinensis]
Length = 450
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 246 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 305
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 306 RRALEQLNGFELAGRPMRV 324
>gi|149756182|ref|XP_001494921.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Equus
caballus]
Length = 412
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 227 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 286
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 287 RRALEQLNGFELAGRPMRV 305
>gi|301781272|ref|XP_002926047.1| PREDICTED: probable RNA-binding protein 23-like isoform 3
[Ailuropoda melanoleuca]
Length = 412
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 226 GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 285
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 286 RRALEQLNGFELAGRPMRV 304
>gi|301781270|ref|XP_002926046.1| PREDICTED: probable RNA-binding protein 23-like isoform 2
[Ailuropoda melanoleuca]
Length = 430
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 244 GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 303
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 304 RRALEQLNGFELAGRPMRV 322
>gi|301781268|ref|XP_002926045.1| PREDICTED: probable RNA-binding protein 23-like isoform 1
[Ailuropoda melanoleuca]
Length = 446
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 260 GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 319
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 320 RRALEQLNGFELAGRPMRV 338
>gi|197102126|ref|NP_001124751.1| probable RNA-binding protein 23 [Pongo abelii]
gi|55725769|emb|CAH89665.1| hypothetical protein [Pongo abelii]
Length = 423
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 242 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 13 VVTKCTYPFLSTPLYDLKQVGPITPDVNSNSPLR-----VYVGSISFELKEDTIRQAFLP 67
+ T Y +P + K+ P+ +++ SP V+ ++ ++ + F
Sbjct: 115 LATGYRYGHSKSPHF--KEKSPVREPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSA 172
Query: 68 FGPIKSINMSWDPITQKHKGFAFVEY----DIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123
G ++ + + D +++ KG A+VE+ +P A L+ +++ GV I V
Sbjct: 173 VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGV-----PIIVQASQA 227
Query: 124 QVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+ RP+ M + + + + R+YV S+H ++TE+ ++
Sbjct: 228 EKNRPAAM------ANNLQKGSGGPMRLYVGSLHFNITEDMLR 264
>gi|431907193|gb|ELK11259.1| Putative RNA-binding protein 23 [Pteropus alecto]
Length = 914
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 238 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSESECA 297
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 298 RRALEQLNGFELAGRPMRV 316
>gi|410961884|ref|XP_003987508.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Felis catus]
Length = 411
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 225 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 284
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 285 RRALEQLNGFELAGRPMRV 303
>gi|148231281|ref|NP_001085808.1| RNA binding motif protein 23 [Xenopus laevis]
gi|49118375|gb|AAH73374.1| MGC80803 protein [Xenopus laevis]
Length = 416
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + E+ +R F PFG I++I + +P T + KGF F+ + E A+ +
Sbjct: 248 GPMRLYVGSLHFNITEEMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRA 307
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVG 126
LEQ+NG L G+ +KV HV G
Sbjct: 308 LEQLNGFELAGKPMKV--GHVTGG 329
>gi|73962357|ref|XP_537365.2| PREDICTED: probable RNA-binding protein 23 isoform 1 [Canis lupus
familiaris]
Length = 445
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 259 GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 318
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 319 RRALEQLNGFELAGRPMRV 337
>gi|281343373|gb|EFB18957.1| hypothetical protein PANDA_015655 [Ailuropoda melanoleuca]
Length = 369
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 183 GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 242
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 243 RRALEQLNGFELAGRPMRV 261
>gi|73962355|ref|XP_848788.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Canis lupus
familiaris]
Length = 429
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 243 GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 302
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 303 RRALEQLNGFELAGRPMRV 321
>gi|410961882|ref|XP_003987507.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Felis catus]
Length = 429
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 243 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 302
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 303 RRALEQLNGFELAGRPMRV 321
>gi|345804022|ref|XP_003435135.1| PREDICTED: probable RNA-binding protein 23 [Canis lupus familiaris]
Length = 411
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 225 GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 284
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 285 RRALEQLNGFELAGRPMRV 303
>gi|149756178|ref|XP_001494868.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Equus
caballus]
Length = 446
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 261 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 320
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 321 RRALEQLNGFELAGRPMRV 339
>gi|149756180|ref|XP_001494897.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Equus
caballus]
Length = 430
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 245 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 305 RRALEQLNGFELAGRPMRV 323
>gi|410961880|ref|XP_003987506.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Felis catus]
Length = 445
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 259 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 318
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 319 RRALEQLNGFELAGRPMRV 337
>gi|387539272|gb|AFJ70263.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 439
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 258 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|355693134|gb|EHH27737.1| hypothetical protein EGK_18008 [Macaca mulatta]
Length = 441
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 258 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|380814242|gb|AFE78995.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
gi|383419605|gb|AFH33016.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 242 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|387539270|gb|AFJ70262.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 423
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 242 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|355778434|gb|EHH63470.1| hypothetical protein EGM_16442, partial [Macaca fascicularis]
Length = 366
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 183 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 242
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 243 RRALEQLNGFELAGRPMRV 261
>gi|66809079|ref|XP_638262.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60466725|gb|EAL64776.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 1035
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGS+ F L ED IR F FG IKS+ + D + K KG+AF+EYD E+A +L+
Sbjct: 589 RIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKD-ASGKSKGYAFIEYDNQESAAKALQS 647
Query: 106 MNGVMLGGRNIKVHFPHVQVG 126
M ++ GR IKV P G
Sbjct: 648 MTNYVMCGRAIKVARPFTGTG 668
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%)
Query: 25 PLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK 84
P D+ + P V N R+Y+GSI++ + ED +R F FG + S + + T K
Sbjct: 749 PTPDVPKPNESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGK 808
Query: 85 HKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121
HKGF FV++++ ++A ++ MNG L GR+IKV P
Sbjct: 809 HKGFGFVDFELKKSADDAIATMNGFELLGRSIKVGRP 845
>gi|388490330|ref|NP_001253303.1| probable RNA-binding protein 23 [Macaca mulatta]
gi|380814244|gb|AFE78996.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
gi|384947950|gb|AFI37580.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 258 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|384947948|gb|AFI37579.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 242 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|383419607|gb|AFH33017.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 258 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|332222976|ref|XP_003260645.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Nomascus
leucogenys]
Length = 442
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 258 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|332222974|ref|XP_003260644.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Nomascus
leucogenys]
Length = 426
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 242 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|195397963|ref|XP_002057597.1| GJ18017 [Drosophila virilis]
gi|194141251|gb|EDW57670.1| GJ18017 [Drosophila virilis]
Length = 599
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P P ++ P+R+YVGS+ F + ED +R F PFG I I + D T + KG+ F+ Y
Sbjct: 330 PFQPKAHT-GPMRLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITY 388
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKV 118
+ A+ +LEQ+NG L GR +KV
Sbjct: 389 HNADDAKKALEQLNGFELAGRPMKV 413
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E++ PE+ L+L +
Sbjct: 244 VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFEDPESVALAL-GL 302
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMP---QAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
+G L G I V + R + P Q ++ + R+YV S+H ++TE+
Sbjct: 303 SGQRLLGVPIMVQHTQAEKNRLQSAPPPFQPKAHTGPM--------RLYVGSLHFNITED 354
Query: 164 DIK 166
++
Sbjct: 355 MLR 357
>gi|195434196|ref|XP_002065089.1| GK15272 [Drosophila willistoni]
gi|194161174|gb|EDW76075.1| GK15272 [Drosophila willistoni]
Length = 612
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%)
Query: 29 LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
L+ P + P+R+YVGS+ F + ED +R F PFG I I + D T + KG+
Sbjct: 337 LQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGY 396
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
F+ Y + A+ +LEQ+NG L GR +KV
Sbjct: 397 GFITYHNADDAKKALEQLNGFELAGRPMKV 426
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + M T++ KG A++E++ PE+ L+L +
Sbjct: 257 VFCIQLSQRVRARDLEEFFSSVGKVRDVRMITCNKTKRFKGIAYIEFEDPESVSLAL-GL 315
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMP---QAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
+G L G I V + R N Q +S + R+YV S+H ++TE+
Sbjct: 316 SGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPM--------RLYVGSLHFNITED 367
Query: 164 DIK 166
++
Sbjct: 368 MLR 370
>gi|193582455|ref|XP_001947710.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like
[Acyrthosiphon pisum]
Length = 298
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG ++ E+ + +R AF+PFG I + M D ++KH+GFAFVE++ PE A S++ M
Sbjct: 15 VYVGGLAEEVDDKVLRSAFIPFGDIVDVQMPLDYESEKHRGFAFVEFEQPEDALDSIDNM 74
Query: 107 NGVMLGGRNIKVHFPHVQ-VGRPSNMP 132
N + GR I+V+ Q + R S P
Sbjct: 75 NEAEIFGRTIRVNLAKPQKINRGSTRP 101
>gi|291403539|ref|XP_002718108.1| PREDICTED: RNA binding motif protein 23 isoform 1 [Oryctolagus
cuniculus]
Length = 410
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S PLR+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E
Sbjct: 226 GSGGPLRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECG 285
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 286 RRALEQLNGFELAGRPMRV 304
>gi|195050249|ref|XP_001992854.1| GH13506 [Drosophila grimshawi]
gi|193899913|gb|EDV98779.1| GH13506 [Drosophila grimshawi]
Length = 628
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P P +++ P+R+YVGS+ F + ED +R F PFG I I + D T + KG+ F+ Y
Sbjct: 359 PFQPKLHT-GPMRLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDNETGRSKGYGFITY 417
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKV 118
+ A+ +LEQ+NG L GR +KV
Sbjct: 418 HNADDAKKALEQLNGFELAGRPMKV 442
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E++ PE+ L+L +
Sbjct: 273 VFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFEDPESVALAL-GL 331
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYN---RIYVASIHPDLTEE 163
+G L G I V + R + P + KL+ R+YV S+H ++TE+
Sbjct: 332 SGQRLLGVPIMVQHTQAEKNRLQSAPPPF--------QPKLHTGPMRLYVGSLHFNITED 383
Query: 164 DIK 166
++
Sbjct: 384 MLR 386
>gi|239791068|dbj|BAH72048.1| ACYPI010179 [Acyrthosiphon pisum]
Length = 298
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG ++ E+ + +R AF+PFG I + M D ++KH+GFAFVE++ PE A S++ M
Sbjct: 15 VYVGGLAEEVDDKVLRSAFIPFGDIVDVQMPLDYESEKHRGFAFVEFEQPEDALDSIDNM 74
Query: 107 NGVMLGGRNIKVHFPHVQ-VGRPSNMP 132
N + GR I+V+ Q + R S P
Sbjct: 75 NEAEIFGRTIRVNLAKPQKINRGSTRP 101
>gi|388583572|gb|EIM23873.1| splicing factor, CC1-like protein [Wallemia sebi CBS 633.66]
Length = 459
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 41 SNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+N P +VYVGS+S+ LKE +R F PFG I+ + +S D + KG+A+V+Y E
Sbjct: 219 ANDPTLYKVYVGSLSYTLKEYDVRSVFEPFGEIEDVELSVDD-QNRSKGYAYVKYKRMED 277
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDE 140
++++ EQMN L GR +KV + G P MP+ QS+ +E
Sbjct: 278 SRMACEQMNRFELAGRTLKVQLVNY-YGDPVRMPE-QSIENE 317
>gi|291403543|ref|XP_002718110.1| PREDICTED: RNA binding motif protein 23 isoform 3 [Oryctolagus
cuniculus]
Length = 428
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S PLR+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E
Sbjct: 244 GSGGPLRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECG 303
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 304 RRALEQLNGFELAGRPMRV 322
>gi|410931844|ref|XP_003979305.1| PREDICTED: RNA-binding protein 39-like, partial [Takifugu rubripes]
Length = 324
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
PLR+YVGS+ F + E+ +R F PFG I++I + D T + KG+ F+ + E A+ +
Sbjct: 140 GPLRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDTDTGRSKGYGFITFADAECAKKA 199
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 200 LEQLNGFELAGRPMKV 215
>gi|291403541|ref|XP_002718109.1| PREDICTED: RNA binding motif protein 23 isoform 2 [Oryctolagus
cuniculus]
Length = 444
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S PLR+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E
Sbjct: 260 GSGGPLRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECG 319
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 320 RRALEQLNGFELAGRPMRV 338
>gi|157108428|ref|XP_001650224.1| splicing factor [Aedes aegypti]
gi|108879330|gb|EAT43555.1| AAEL005046-PA [Aedes aegypti]
Length = 544
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
++ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + + A+
Sbjct: 283 TSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAK 342
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 343 KALEQLNGFELAGRPMKV 360
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E+ PE+ L+L +
Sbjct: 191 VFCMQLSQRIRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFKDPESVALAL-GL 249
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G I V + R ++ P ++T R+YV S+H ++TE+ ++
Sbjct: 250 SGQRLLGIPISVQHTQAEKNRMASTPPQPPP--KVTSGPM---RLYVGSLHFNITEDMLR 304
>gi|402589265|gb|EJW83197.1| RNA recognition domain-containing protein, partial [Wuchereria
bancrofti]
Length = 231
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
+P V+++ V+VG +S E+ T++ AF FG I + DP T K KG+ FV + +
Sbjct: 12 SPKVDTSKNYHVFVGDLSTEVNNCTLKAAFESFGEISEAKVIRDPQTLKSKGYGFVSFPV 71
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYN-RIYVA 154
E AQ ++E+MNG M+G R I+ ++ + D I N +YV
Sbjct: 72 KENAQKAIEEMNGQMIGRRQIRTNWAVRRFDGGEENAMKPPTYDNIFNATHAANTSVYVG 131
Query: 155 SIHPDLTEEDI 165
I P T+E++
Sbjct: 132 GISPVTTDEEL 142
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG IS ++ + Q+F + + + K +G+AFV Y +AA ++ M
Sbjct: 128 VYVGGISPVTTDEELMQSFSAIATVIEVRLF------KQQGYAFVRYLNKDAAARAIMSM 181
Query: 107 NGVMLGGRNIKVHFPH 122
NG ++ G+ I+ +
Sbjct: 182 NGKVINGQKIRCSWSR 197
>gi|339237675|ref|XP_003380392.1| RNA-binding protein 39 [Trichinella spiralis]
gi|316976770|gb|EFV59992.1| RNA-binding protein 39 [Trichinella spiralis]
Length = 680
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+ P+++YVGS+ F + E+ +R F PFG I+SI + DP T + +G+ F+ + E
Sbjct: 321 TQNRGPMKLYVGSLHFNITEEMLRGIFEPFGKIESIQLLKDPETSRSRGYGFITFYNSED 380
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ ++EQ+NG L GR +KV
Sbjct: 381 AKRAMEQLNGFELAGRPMKV 400
>gi|313212201|emb|CBY36214.1| unnamed protein product [Oikopleura dioica]
Length = 290
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y GS+S++ E+ I++ F +G I S+ MS+D + HKGFAFVEY EAA L+L++
Sbjct: 30 RLYAGSLSYDTTEEEIKELFELYGEITSLTMSYDVEKKHHKGFAFVEYATAEAAALALKK 89
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
+ GV L R +K +GRP + Q+++ ++ + + R+Y+ ++ D++ E I
Sbjct: 90 LKGVTLNDRRMK-------LGRPQAALRYQTLLAQLEMDGRASARVYLGNLPKDVSLEKI 142
Query: 166 K 166
+
Sbjct: 143 E 143
>gi|209154564|gb|ACI33514.1| RNA-binding protein 39 [Salmo salar]
Length = 525
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + E+ +R F PFG I+SI + D T + KG+ F+ + E A+ +
Sbjct: 247 GPMRLYVGSLHFNITEEMLRGIFEPFGKIESIQLMMDSETGRSKGYGFITFSDTECAKKA 306
Query: 103 LEQMNGVMLGGRNIKV 118
L+Q+NG L GR +KV
Sbjct: 307 LDQLNGFELAGRPMKV 322
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 33/134 (24%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY----DIPEAAQLS 102
V+ ++ ++ + + F G ++ + M D +++ KG A++E+ +P A LS
Sbjct: 152 VFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEANSVPLAIGLS 211
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYN----------RIY 152
+++ GV + + QA V+ E A + N R+Y
Sbjct: 212 GQRLLGVPI-------------------IVQASQVMAEKNRAAAMANNLQKGNAGPMRLY 252
Query: 153 VASIHPDLTEEDIK 166
V S+H ++TEE ++
Sbjct: 253 VGSLHFNITEEMLR 266
>gi|157138134|ref|XP_001664142.1| peptidyl-prolyl cis-trans isomerase e, ppie [Aedes aegypti]
gi|108869557|gb|EAT33782.1| AAEL013948-PA [Aedes aegypti]
Length = 304
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VYVG +S E+ E I AF+PFG + I M D +QKH+GFAF+E++ E A
Sbjct: 2 SNDKRTVYVGGLSDEVTEKLINDAFIPFGDLVDIQMPVDYESQKHRGFAFIEFESAEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQ-VGRPSNMP 132
+++ MN L GR I+V+ Q + SN P
Sbjct: 62 AAVDNMNDSELCGRTIRVNIAKPQRIKEGSNKP 94
>gi|408794570|ref|ZP_11206175.1| hypothetical protein LEP1GSC017_3646 [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408461805|gb|EKJ85535.1| hypothetical protein LEP1GSC017_3646 [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 89
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++ F LKE+ IRQ F +G I+ + M D T +GFAF+ Y PE A+ ++ Q
Sbjct: 5 KIYVGNLKFTLKEENIRQIFSVYGVIQDLKMIHDRETGNFRGFAFITYANPEEAEEAVTQ 64
Query: 106 MNGVMLGGRNIKVHFPH 122
MNG + GRN+KV F
Sbjct: 65 MNGQPVDGRNLKVTFAE 81
>gi|344298613|ref|XP_003420986.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Loxodonta
africana]
Length = 434
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I I ++ D T KG+ F+ + E A+
Sbjct: 246 SGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECAR 305
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR ++V
Sbjct: 306 RALEQLNGFELAGRPMRV 323
>gi|330793087|ref|XP_003284617.1| hypothetical protein DICPUDRAFT_148416 [Dictyostelium purpureum]
gi|325085416|gb|EGC38823.1| hypothetical protein DICPUDRAFT_148416 [Dictyostelium purpureum]
Length = 829
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVY+G++ F L ED I QAF FG +KSI + D K KG+AF+EY+ P++A ++E
Sbjct: 464 RVYIGNLHFSLAEDAIIQAFSQFGTVKSILLGKD-ANGKSKGYAFIEYESPDSATKAIES 522
Query: 106 MNGVMLGGRNIKVHFP 121
M+ ++ GR IKV+ P
Sbjct: 523 MSNYVMAGRVIKVNRP 538
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
I P VN + R+Y+GSI++ + E+ IR F FG I S + + T KHKG+ F++++
Sbjct: 614 IAPAVNEAN--RIYIGSINWNVTEEQIRGIFSQFGKIISCFLMQNTETGKHKGYGFIDFE 671
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
++A +L MNG L GR +K VGRP+ A ++ + ++ L
Sbjct: 672 NKKSADDALA-MNGFELLGRAMK-------VGRPTKGASANTISNGSIDKTSL 716
>gi|344298617|ref|XP_003420988.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Loxodonta
africana]
Length = 416
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I I ++ D T KG+ F+ + E A+
Sbjct: 228 SGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECAR 287
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR ++V
Sbjct: 288 RALEQLNGFELAGRPMRV 305
>gi|344298615|ref|XP_003420987.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Loxodonta
africana]
Length = 450
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I I ++ D T KG+ F+ + E A+
Sbjct: 262 SGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECAR 321
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR ++V
Sbjct: 322 RALEQLNGFELAGRPMRV 339
>gi|393907830|gb|EFO21360.2| hypothetical protein LOAG_07126 [Loa loa]
Length = 317
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
+P VN+N V+VG ++ E+ T++ AF FG I + DP T K K + FV + +
Sbjct: 122 SPKVNTNKNFHVFVGDLATEVDSCTLKAAFESFGEISEAKVIRDPQTLKSKSYGFVSFAV 181
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYN-RIYVA 154
E A+ ++E+MNG M+G R I+ ++ + D I N +YV
Sbjct: 182 KENAEKAIEKMNGQMIGRRPIRTNWAVRRFDGGEEYAMKPPTYDNIFNATHATNTSVYVG 241
Query: 155 SIHPDLTEEDI 165
I P T+E++
Sbjct: 242 GISPATTDEEL 252
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG IS ++ + Q F + + + K +G+AFV Y +AA ++ M
Sbjct: 238 VYVGGISPATTDEELMQPFSAIATVTEVRLF------KQQGYAFVRYLTKDAATRAIMFM 291
Query: 107 NGVMLGGRNIK 117
+G + G+ IK
Sbjct: 292 HGKEINGQKIK 302
>gi|312080690|ref|XP_003142708.1| hypothetical protein LOAG_07126 [Loa loa]
Length = 366
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
+P VN+N V+VG ++ E+ T++ AF FG I + DP T K K + FV + +
Sbjct: 122 SPKVNTNKNFHVFVGDLATEVDSCTLKAAFESFGEISEAKVIRDPQTLKSKSYGFVSFAV 181
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYN-RIYVA 154
E A+ ++E+MNG M+G R I+ ++ + D I N +YV
Sbjct: 182 KENAEKAIEKMNGQMIGRRPIRTNWAVRRFDGGEEYAMKPPTYDNIFNATHATNTSVYVG 241
Query: 155 SIHPDLTEEDI 165
I P T+E++
Sbjct: 242 GISPATTDEEL 252
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG IS ++ + Q F + + + K +G+AFV Y +AA ++ M
Sbjct: 238 VYVGGISPATTDEELMQPFSAIATVTEVRLF------KQQGYAFVRYLTKDAATRAIMFM 291
Query: 107 NGVMLGGRNIK 117
+G + G+ IK
Sbjct: 292 HGKEINGQKIK 302
>gi|170071297|ref|XP_001869868.1| splicing factor [Culex quinquefasciatus]
gi|167867202|gb|EDS30585.1| splicing factor [Culex quinquefasciatus]
Length = 524
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + + A+ +
Sbjct: 265 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKA 324
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 325 LEQLNGFELAGRPMKV 340
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E+ PE+ L+L +
Sbjct: 171 VFCMQLSQRIRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFRDPESVALAL-GL 229
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNM---PQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
+G L G I V + R +N+ P + ++ + R+YV S+H ++TE+
Sbjct: 230 SGQRLLGIPISVQHTQAEKNRLANIPPPPPPKVIVGPM--------RLYVGSLHFNITED 281
Query: 164 DIK 166
++
Sbjct: 282 MLR 284
>gi|7022544|dbj|BAA91638.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 224 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 283
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 284 RRALEQLNGFELAGRPMRV 302
>gi|346465875|gb|AEO32782.1| hypothetical protein [Amblyomma maculatum]
Length = 558
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED ++ F PFG I I + D T + KG+ F+ + E A+ +
Sbjct: 297 GPMRLYVGSLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKA 356
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ QA S +D
Sbjct: 357 LEQLNGFELAGRPMKVG----HVTERTDVSQAPSFLD 389
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + D T++ KG A+VE+ E+ L++ +
Sbjct: 199 VFCMQLSQRIRARDLEEFFSAVGKVRDVRLIMDNKTRRSKGIAYVEFLDVESVPLAM-GL 257
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLY-NRIYVASIHPDLTEEDI 165
NG L G I + Q R Q S + + R+YV S+H ++TE+ +
Sbjct: 258 NGQKLFG--IPIVVQPTQAERNRAAAQNASTSSSTLQRGNVGPMRLYVGSLHFNITEDML 315
Query: 166 K 166
K
Sbjct: 316 K 316
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 28/146 (19%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
V+VG +S E+ +R+AFLPFG + + D T K KG+ FV Y E A+ ++E
Sbjct: 132 FHVFVGDLSAEIDSTKLREAFLPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIE 191
Query: 105 QMNGVMLGGRNIKVHF-----------------------PHVQVGRPSNMPQAQSVIDEI 141
QMNG LG R I+ ++ PH GR + + DE+
Sbjct: 192 QMNGQWLGRRTIRTNWATRKPEEEGGERRERDRNERGDRPHRGEGRHHHF---EKTYDEV 248
Query: 142 TEEAKLYN-RIYVASIHPDLTEEDIK 166
EA N +YV +I+ LTE++I+
Sbjct: 249 FREAAADNTSVYVGNINS-LTEDEIR 273
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L ED IR+ F FG I + + K +G+AFV+++ E+A ++ QM
Sbjct: 259 VYVGNIN-SLTEDEIRRGFERFGQIVEVRIF------KSQGYAFVKFEQKESAARAIVQM 311
Query: 107 NGVMLGGRNIK 117
N + G+ ++
Sbjct: 312 NNQDVSGQMVR 322
>gi|125554762|gb|EAZ00368.1| hypothetical protein OsI_22384 [Oryza sativa Indica Group]
Length = 213
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSW-DPITQKHKGFAFVEYDIP 96
DVN VYVG+I+F E +R A GP++S+ ++ DP T K KG+AFVEY
Sbjct: 3 DVNCRCSRVVYVGNIAFHASEAELRDACELIGPVRSLRLAAADPATSKRKGYAFVEYADD 62
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASI 156
E A+ +L ++G +L GR ++V RPS + + V D E + + ++ AS+
Sbjct: 63 ETARSALRNLHGHLLRGRELRVGL----AARPST--RRRGVGDAEREPVGMEDAVHAASL 116
>gi|261858408|dbj|BAI45726.1| RNA binding motif protein 23 [synthetic construct]
Length = 406
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 224 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 283
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 284 RRALEQLNGFELAGRPMRV 302
>gi|402875680|ref|XP_003901625.1| PREDICTED: probable RNA-binding protein 23 [Papio anubis]
Length = 497
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T KG+ F+ + E A
Sbjct: 313 GSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECA 372
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 373 RRALEQLNGFELAGRPMRV 391
>gi|116734698|ref|NP_001070820.1| probable RNA-binding protein 23 isoform 3 [Homo sapiens]
gi|119586628|gb|EAW66224.1| RNA binding motif protein 23, isoform CRA_c [Homo sapiens]
Length = 405
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 224 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 283
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 284 RRALEQLNGFELAGRPMRV 302
>gi|12803481|gb|AAH02566.1| RNA binding motif protein 23 [Homo sapiens]
gi|189055004|dbj|BAG37988.1| unnamed protein product [Homo sapiens]
gi|312151810|gb|ADQ32417.1| RNA binding motif protein 23 [synthetic construct]
Length = 424
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 242 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|168048203|ref|XP_001776557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672148|gb|EDQ58690.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 372
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S R+YVG++ F + ED +RQ F PFGP++ + + D T + KG+ FV+Y E A+
Sbjct: 68 SGGARRLYVGNLHFNMTEDQLRQVFEPFGPVELVQLPSDIETGQSKGYGFVQYARLEDAR 127
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVG 126
+ + +NG+ L GR IKV Q+G
Sbjct: 128 AAQQNLNGLELAGRPIKVSAVSDQIG 153
>gi|429329604|gb|AFZ81363.1| RNA recognition motif domain-containing protein [Babesia equi]
Length = 494
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+GS+ ++KE+ IR F FG I I M DP T K KG+ FVEY E+A +++
Sbjct: 153 RIYIGSLDPDVKEEDIRTIFSSFGEITCIEMPRDPSTNKSKGYCFVEYRKKESADVAIVS 212
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPS 129
M G + GR IK+ P+ G+ S
Sbjct: 213 MQGFQIKGRPIKLGKPNAATGQGS 236
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 32 VGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAF 90
+GP P++N RV++ ++ FEL I++ F PFG I + + D + G +
Sbjct: 309 IGPTPPEMNGK---RVHLENVPFELGSQDIKKIFEPFGTIINCVLIPRDMLPGSFYGCGY 365
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID----------E 140
++++ P+ AQ+ MNG + G ++V + PSN+ +++D E
Sbjct: 366 IDFESPQVAQIVSSAMNGFEIAGAKVQVTMAPSSL-EPSNVIVLCNMVDPKLVDEELPNE 424
Query: 141 ITEEAKLYNRIYVASIH 157
+ EE Y + +H
Sbjct: 425 VKEECSKYGTVTSVYLH 441
>gi|221044666|dbj|BAH14010.1| unnamed protein product [Homo sapiens]
Length = 270
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 88 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 147
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 148 RRALEQLNGFELAGRPMRV 166
>gi|119586631|gb|EAW66227.1| RNA binding motif protein 23, isoform CRA_f [Homo sapiens]
Length = 269
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 88 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 147
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 148 RRALEQLNGFELAGRPMRV 166
>gi|116734694|ref|NP_060577.3| probable RNA-binding protein 23 isoform 2 [Homo sapiens]
gi|18848317|gb|AAH24208.1| RNA binding motif protein 23 [Homo sapiens]
gi|119586627|gb|EAW66223.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
gi|119586633|gb|EAW66229.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
Length = 423
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 242 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|10880789|gb|AAG24388.1|AF275678_1 PP239 protein [Homo sapiens]
Length = 418
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 236 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 295
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 296 RRALEQLNGFELAGRPMRV 314
>gi|183221265|ref|YP_001839261.1| RNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
gi|189911356|ref|YP_001962911.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167776032|gb|ABZ94333.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167779687|gb|ABZ97985.1| RNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
Length = 89
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++ F LKE+ IRQ F +G I+ + M D T +GFAF+ Y P A+ ++ Q
Sbjct: 5 KIYVGNLKFSLKEENIRQIFSVYGAIQDLKMIHDRETGNFRGFAFITYASPSEAEEAVAQ 64
Query: 106 MNGVMLGGRNIKVHFPH 122
MNG + GRN+KV F
Sbjct: 65 MNGQPIDGRNLKVTFAE 81
>gi|426376374|ref|XP_004054976.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Gorilla
gorilla gorilla]
Length = 403
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 224 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 283
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 284 RRALEQLNGFELAGRPMRV 302
>gi|116734696|ref|NP_001070819.1| probable RNA-binding protein 23 isoform 1 [Homo sapiens]
gi|34925229|sp|Q86U06.1|RBM23_HUMAN RecName: Full=Probable RNA-binding protein 23; AltName:
Full=RNA-binding motif protein 23; AltName:
Full=RNA-binding region-containing protein 4; AltName:
Full=Splicing factor SF2
gi|28071058|emb|CAD61910.1| unnamed protein product [Homo sapiens]
gi|119586629|gb|EAW66225.1| RNA binding motif protein 23, isoform CRA_d [Homo sapiens]
Length = 439
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 258 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|289742363|gb|ADD19929.1| cyclophilin-type peptidyl-prolyl cis-trans isomerase [Glossina
morsitans morsitans]
Length = 305
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VY+GS++ E+ E + AF+PFG I I + D +QKH+GFAF+EY+ E A
Sbjct: 3 SNDKRTVYIGSLADEVTEKLLNNAFIPFGDIADIQIPVDYESQKHRGFAFIEYESAEDAA 62
Query: 101 LSLEQMNGVMLGGRNIKVHFP 121
+++ MN L GR I+V+
Sbjct: 63 SAIDNMNDSELCGRTIRVNLA 83
>gi|426376370|ref|XP_004054974.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Gorilla
gorilla gorilla]
Length = 421
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 242 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|391332510|ref|XP_003740677.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 341
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 32 VGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFV 91
G PD N + ++VG +S +++ +R+AF PFG I + DP TQK KG+ FV
Sbjct: 37 AGSTKPDTNKH--FHIFVGDLSSDVETQQLREAFTPFGEISDCRVVRDPQTQKSKGYGFV 94
Query: 92 EYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS-----------VIDE 140
+ + A+ ++ MNG LGGR I+ ++ + +N Q S DE
Sbjct: 95 SFLRKQDAETAINAMNGQWLGGRVIRTNWATRRPASNANNQQEGSQGNSTPKYTPLTFDE 154
Query: 141 ITEEAKLYN-RIYVASIHPDLTEEDIK 166
+ +A N +Y + L+EE I+
Sbjct: 155 VYNQASPTNCTVYCGGLGQGLSEELIQ 181
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 23 STPLYDLKQVGPITPD--VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSW 78
STP Y P+T D N SP VY G + L E+ I++ F +G I+ I +
Sbjct: 143 STPKYT-----PLTFDEVYNQASPTNCTVYCGGLGQGLSEELIQKTFSSYGIIQEIRVF- 196
Query: 79 DPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVI 138
K KG+AFV + E+A ++ ++ + G+ +K + G+ S+ P Q V
Sbjct: 197 -----KDKGYAFVRFATKESATHAIVAVHNTDVNGQIVKCSW-----GKESSDPNNQQVQ 246
Query: 139 DEI 141
I
Sbjct: 247 HTI 249
>gi|168061001|ref|XP_001782480.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666033|gb|EDQ52699.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 363
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S R+YVG++ F + ED +RQ F PFGP++ + + D T + KG+ FV+Y E A+
Sbjct: 68 SGGARRLYVGNLHFNMTEDQLRQVFEPFGPVELVQLPSDIETGQSKGYGFVQYARLEDAR 127
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVG 126
+ + +NG+ L GR IKV Q+G
Sbjct: 128 AAQQNLNGLELAGRPIKVSAVSDQIG 153
>gi|426376372|ref|XP_004054975.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Gorilla
gorilla gorilla]
Length = 437
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 258 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|397473315|ref|XP_003808160.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Pan paniscus]
Length = 408
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 224 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 283
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 284 RRALEQLNGFELAGRPMRV 302
>gi|397473313|ref|XP_003808159.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Pan paniscus]
Length = 442
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 258 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|170058744|ref|XP_001865056.1| splicing factor [Culex quinquefasciatus]
gi|167877732|gb|EDS41115.1| splicing factor [Culex quinquefasciatus]
Length = 546
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 48/75 (64%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + + A+ +L
Sbjct: 288 PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKAL 347
Query: 104 EQMNGVMLGGRNIKV 118
EQ+NG L GR +KV
Sbjct: 348 EQLNGFELAGRPMKV 362
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 29 LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
L+++ P D+ + V+ +S ++ + + F G ++ + + T++ KG
Sbjct: 180 LEELSPEERDMRT-----VFCMQLSQRIRARDLEEFFSSVGKVRDVRLITCNKTKRFKGI 234
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM---PQAQSVIDEITEEA 145
A++E+ PE+ L+L ++G L G I V + R +N+ P + ++ +
Sbjct: 235 AYIEFRDPESVALAL-GLSGQRLLGIPISVQHTQAEKNRLANIPPPPPPKVIVGPM---- 289
Query: 146 KLYNRIYVASIHPDLTEEDIK 166
R+YV S+H ++TE+ ++
Sbjct: 290 ----RLYVGSLHFNITEDMLR 306
>gi|119586634|gb|EAW66230.1| RNA binding motif protein 23, isoform CRA_h [Homo sapiens]
Length = 467
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 286 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 345
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 346 RRALEQLNGFELAGRPMRV 364
>gi|335310533|ref|XP_003362077.1| PREDICTED: probable RNA-binding protein 23 [Sus scrofa]
Length = 443
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 260 GTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 319
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +++
Sbjct: 320 RRALEQLNGFELAGRPMRI 338
>gi|119586630|gb|EAW66226.1| RNA binding motif protein 23, isoform CRA_e [Homo sapiens]
Length = 449
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 268 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 327
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 328 RRALEQLNGFELAGRPMRV 346
>gi|195335275|ref|XP_002034300.1| GM21798 [Drosophila sechellia]
gi|194126270|gb|EDW48313.1| GM21798 [Drosophila sechellia]
Length = 301
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN +YVG ++ E+ E + AF+PFG I I M D +Q+H+GFAF+EY+ E A
Sbjct: 2 SNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 AAMDNMNDSELCGRTIRVNL 81
>gi|397473311|ref|XP_003808158.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Pan paniscus]
Length = 426
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 242 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|119586626|gb|EAW66222.1| RNA binding motif protein 23, isoform CRA_a [Homo sapiens]
Length = 483
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 302 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 361
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 362 RRALEQLNGFELAGRPMRV 380
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+++ V+VG +S E+ +R+AF PFG + + D T K KG+ FV Y E
Sbjct: 125 IDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREE 184
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN-MPQAQSVIDEITEEAKLYN-RIYVASI 156
A+ ++EQMNG LG R I+ ++ + G + + DEI + N +YV +I
Sbjct: 185 AERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPVHYNEKSYDEIYNQTSGDNTSVYVGNI 244
Query: 157 HPDLTEEDIK 166
+L+EEDI+
Sbjct: 245 -ANLSEEDIR 253
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L E+ IRQAF +G I + + K +G+AFV++D +AA ++ QM
Sbjct: 239 VYVGNIA-NLSEEDIRQAFASYGRISEVRIF------KMQGYAFVKFDNKDAAAKAIVQM 291
Query: 107 NGVMLGGRNIK 117
N +GG+ ++
Sbjct: 292 NNQEVGGQLVR 302
>gi|17647301|ref|NP_523773.1| cyclophilin-33 [Drosophila melanogaster]
gi|13124101|sp|Q9V3G3.1|PPIE_DROME RecName: Full=Peptidyl-prolyl cis-trans isomerase E; Short=PPIase
E; AltName: Full=Cyclophilin 33; AltName:
Full=Cyclophilin E; AltName: Full=Rotamase E
gi|6007764|gb|AAF01031.1|AF182826_1 cyclophilin-33 [Drosophila melanogaster]
gi|7302761|gb|AAF57839.1| cyclophilin-33 [Drosophila melanogaster]
gi|16769500|gb|AAL28969.1| LD35248p [Drosophila melanogaster]
gi|220954214|gb|ACL89650.1| cyp33-PA [synthetic construct]
Length = 300
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN +YVG ++ E+ E + AF+PFG I I M D +Q+H+GFAF+EY+ E A
Sbjct: 2 SNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 AAIDNMNDSELCGRTIRVNL 81
>gi|195584258|ref|XP_002081931.1| GD11288 [Drosophila simulans]
gi|194193940|gb|EDX07516.1| GD11288 [Drosophila simulans]
Length = 301
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN +YVG ++ E+ E + AF+PFG I I M D +Q+H+GFAF+EY+ E A
Sbjct: 2 SNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 AAIDNMNDSELCGRTIRVNL 81
>gi|7446337|pir||T15542 hypothetical protein C18A3.5 - Caenorhabditis elegans
Length = 448
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
G +++ V+VG +S E+ +R+AF PFG + + D T K KG+ FV
Sbjct: 163 GQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVS 222
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVG---RPSNMPQAQSVIDEITEEAKLYN 149
Y E A+ ++EQMNG LG R I+ ++ + G +PS+ + DEI + N
Sbjct: 223 YPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKS--YDEIYNQTSGDN 280
Query: 150 -RIYVASIHPDLTEEDIK 166
+YV +I LTE++I+
Sbjct: 281 TSVYVGNI-ASLTEDEIR 297
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L ED IRQ F FG I + + K +G+AFV++D +AA ++ QM
Sbjct: 283 VYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQM 335
Query: 107 NGVMLGGRNIK 117
N +GG+ ++
Sbjct: 336 NNQDVGGQLVR 346
>gi|125808073|ref|XP_001360625.1| GA18502 [Drosophila pseudoobscura pseudoobscura]
gi|54635797|gb|EAL25200.1| GA18502 [Drosophila pseudoobscura pseudoobscura]
Length = 302
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VYVG ++ E+ E + AF+PFG I I M D +Q+H+GFAF+EY+ E A
Sbjct: 2 SNDKRTVYVGGLADEVTERLLNNAFIPFGDIADIQMPVDYESQRHRGFAFIEYEQAEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 SAIDNMNDSELCGRTIRVNL 81
>gi|196009388|ref|XP_002114559.1| hypothetical protein TRIADDRAFT_28438 [Trichoplax adhaerens]
gi|190582621|gb|EDV22693.1| hypothetical protein TRIADDRAFT_28438 [Trichoplax adhaerens]
Length = 292
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 41 SNSPLR-------VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+NS +R ++VG +S ++ +R AF FG + + D T K +G+ FV Y
Sbjct: 80 TNSSMRKDTNHYHIFVGDLSPDIDTTLLRSAFNQFGHVSDARVVKDSATGKPRGYGFVSY 139
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV------IDEITEEAKL 147
A+ +++ MNG LGGRNI+ ++ + G +N + S DEI + +
Sbjct: 140 QFKHEAENAMQSMNGAWLGGRNIRTNWATRKPGATTNRQNSDSSSTKSLNYDEIYLQTAV 199
Query: 148 YN-RIYVASIHPDLTEEDIK 166
YN +YV ++ TEE ++
Sbjct: 200 YNCTVYVGNLSAGTTEETLR 219
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG---FAFVEYDIPEAAQLSLE 104
Y+G++ + E +I + F FG IK + IT+ H G + FVEY +A +L+
Sbjct: 8 YIGNLDRQTTEQSIGELFAKFGAIKRCKL----ITE-HGGNDPYGFVEYAEKNSAARALD 62
Query: 105 QMNGVMLGGRNIKVHFP 121
MNG G R IKV++
Sbjct: 63 AMNGYSFGSRAIKVNWA 79
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG++S E+T+R+ F+PFGPI I + D K +AF+ Y + A ++ +
Sbjct: 204 VYVGNLSAGTTEETLRRIFIPFGPIADIRVFPD------KNYAFIRYMSHDHATNAIVVI 257
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMP 132
+G + G +K + G+ +N P
Sbjct: 258 HGTAVEGSQVKCSW-----GKEANDP 278
>gi|391330532|ref|XP_003739714.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase
E-like [Metaseiulus occidentalis]
Length = 324
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN+ +YVG ++ E+ E+ +R AF PFG I I + D +KH+GFAF+E+++ E A
Sbjct: 17 SNNKKLIYVGGLAEEVDENVLRAAFNPFGDINGIQIPLDYEXEKHRGFAFIEFELAEDAA 76
Query: 101 LSLEQMNGVMLGGRNIKVHFP 121
+++ MN L GR I+V+
Sbjct: 77 AAMDNMNDGELFGRTIRVNLA 97
>gi|195025318|ref|XP_001986035.1| GH20760 [Drosophila grimshawi]
gi|193902035|gb|EDW00902.1| GH20760 [Drosophila grimshawi]
Length = 304
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VYVG ++ E+ E + AF+PFG I I M D +QKH+GFAF+EY+ E A
Sbjct: 2 SNDKRTVYVGGLADEVTERLLNNAFIPFGDIADIQMPVDYESQKHRGFAFIEYENYEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 SAIDNMNDSELCGRTIRVNL 81
>gi|195123191|ref|XP_002006092.1| GI20843 [Drosophila mojavensis]
gi|193911160|gb|EDW10027.1| GI20843 [Drosophila mojavensis]
Length = 303
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VYVG ++ E+ E + AF+PFG I I M D +QKH+GFAF+EY+ E A
Sbjct: 2 SNDKRTVYVGGLADEVTERLLNNAFIPFGDIADIQMPVDYESQKHRGFAFIEYENYEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 SAIDNMNDSELCGRTIRVNL 81
>gi|195150527|ref|XP_002016202.1| GL11464 [Drosophila persimilis]
gi|194110049|gb|EDW32092.1| GL11464 [Drosophila persimilis]
Length = 302
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VYVG ++ E+ E + AF+PFG I I M D +Q+H+GFAF+EY+ E A
Sbjct: 2 SNDKRTVYVGGLADEVTERLLNNAFIPFGDIADIQMPVDYESQRHRGFAFIEYEQAEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 SAIDNMNDSELCGRTIRVNL 81
>gi|17531963|ref|NP_495120.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
gi|373219011|emb|CCD65016.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
Length = 376
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
G +++ V+VG +S E+ +R+AF PFG + + D T K KG+ FV
Sbjct: 91 GQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVS 150
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVG---RPSNMPQAQSVIDEITEEAKLYN 149
Y E A+ ++EQMNG LG R I+ ++ + G +PS+ + DEI + N
Sbjct: 151 YPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKS--YDEIYNQTSGDN 208
Query: 150 -RIYVASIHPDLTEEDIK 166
+YV +I LTE++I+
Sbjct: 209 TSVYVGNI-ASLTEDEIR 225
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L ED IRQ F FG I + + K +G+AFV++D +AA ++ QM
Sbjct: 211 VYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQM 263
Query: 107 NGVMLGGRNIK 117
N +GG+ ++
Sbjct: 264 NNQDVGGQLVR 274
>gi|32564506|ref|NP_871980.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
gi|373219014|emb|CCD65019.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
Length = 295
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
G +++ V+VG +S E+ +R+AF PFG + + D T K KG+ FV
Sbjct: 10 GQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVS 69
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVG---RPSNMPQAQSVIDEITEEAKLYN 149
Y E A+ ++EQMNG LG R I+ ++ + G +PS+ + DEI + N
Sbjct: 70 YPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN--EKSYDEIYNQTSGDN 127
Query: 150 -RIYVASIHPDLTEEDIK 166
+YV +I LTE++I+
Sbjct: 128 TSVYVGNI-ASLTEDEIR 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L ED IRQ F FG I + + K +G+AFV++D +AA ++ QM
Sbjct: 130 VYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQM 182
Query: 107 NGVMLGGRNIK 117
N +GG+ ++
Sbjct: 183 NNQDVGGQLVR 193
>gi|32564504|ref|NP_495123.2| Protein TIAR-1, isoform e [Caenorhabditis elegans]
gi|373219013|emb|CCD65018.1| Protein TIAR-1, isoform e [Caenorhabditis elegans]
Length = 305
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
G +++ V+VG +S E+ +R+AF PFG + + D T K KG+ FV
Sbjct: 20 GQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVS 79
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVG---RPSNMPQAQSVIDEITEEAKLYN 149
Y E A+ ++EQMNG LG R I+ ++ + G +PS+ + DEI + N
Sbjct: 80 YPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN--EKSYDEIYNQTSGDN 137
Query: 150 -RIYVASIHPDLTEEDIK 166
+YV +I LTE++I+
Sbjct: 138 TSVYVGNI-ASLTEDEIR 154
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L ED IRQ F FG I + + K +G+AFV++D +AA ++ QM
Sbjct: 140 VYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQM 192
Query: 107 NGVMLGGRNIK 117
N +GG+ ++
Sbjct: 193 NNQDVGGQLVR 203
>gi|291245050|ref|XP_002742404.1| PREDICTED: MGC81970 protein-like isoform 1 [Saccoglossus
kowalevskii]
Length = 556
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
++ P+R+YVGS+ F + E+ +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 251 GNSGPMRLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDA 310
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 311 KKALEQLNGFELAGRPMKV 329
>gi|332376136|gb|AEE63208.1| unknown [Dendroctonus ponderosae]
Length = 371
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 7/133 (5%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P ++++ ++VG +S E++ DT+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKTDTSNHHHIFVGDLSPEIETDTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF-----PHVQVGRPSNMPQAQSVIDEITEEAKLYN-R 150
A+ +++ MNG LG R+I+ ++ P + +P N + Q DE+ + N
Sbjct: 148 AEAENAIQAMNGQWLGSRSIRTNWSTRKPPPPRAEKP-NQSKKQITFDEVYNQTSPTNTT 206
Query: 151 IYVASIHPDLTEE 163
+Y LT++
Sbjct: 207 VYCGGFASGLTDD 219
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++ ++ED + F GP+K + +P + +AFVE+ ++A +L
Sbjct: 7 PKTLYVGNLDISVQEDLLCALFSQIGPVKGCKIIREP---GNDPYAFVEFTNHQSASTAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MN + + +KV++ P N P+ + ++ I+V + P++ +
Sbjct: 64 IAMNKRVFLDKEMKVNW----ATSPGNQPKT---------DTSNHHHIFVGDLSPEIETD 110
Query: 164 DIK 166
++
Sbjct: 111 TLR 113
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 40 NSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
N SP VY G + L +D + + F FG I+ I + K KG+AF+++ E
Sbjct: 198 NQTSPTNTTVYCGGFASGLTDDLVTKTFSRFGAIQDIRVF------KDKGYAFIKFVSKE 251
Query: 98 AAQLSLEQMNGVMLGGRNIKVHF 120
+A ++E ++ + G +K +
Sbjct: 252 SATHAIENIHNTEINGHTVKCFW 274
>gi|195382061|ref|XP_002049750.1| GJ20579 [Drosophila virilis]
gi|194144547|gb|EDW60943.1| GJ20579 [Drosophila virilis]
Length = 302
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VYVG ++ E+ E + AF+PFG I I M D +QKH+GFAF+EY+ E A
Sbjct: 2 SNDKRTVYVGGLADEVTERLLNNAFIPFGDIADIQMPVDYESQKHRGFAFIEYENYEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 SAIDNMNDSELCGRTIRVNL 81
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
G +++ V+VG +S E+ +R+AF PFG + + D T K KG+ FV
Sbjct: 123 GQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVS 182
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVG---RPSNMPQAQSVIDEITEEAKLYN 149
Y E A+ ++EQMNG LG R I+ ++ + G +PS+ + DEI + N
Sbjct: 183 YPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKS--YDEIYNQTSGDN 240
Query: 150 -RIYVASIHPDLTEEDIK 166
+YV +I LTE++I+
Sbjct: 241 TSVYVGNI-ASLTEDEIR 257
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L ED IRQ F FG I + + K +G+AFV++D +AA ++ QM
Sbjct: 243 VYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQM 295
Query: 107 NGVMLGGRNIK 117
N +GG+ ++
Sbjct: 296 NNQDVGGQLVR 306
>gi|215820610|ref|NP_001135964.1| RNA binding motif protein 39 [Nasonia vitripennis]
Length = 516
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + E+ ++ F PFG I++I + DP T + KG+ F+ + + A+ +
Sbjct: 253 GPMRLYVGSLLFNITEEMLKGIFEPFGKIENIQLIMDPETGRSKGYGFLTFRNADDAKKA 312
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ Q S++D
Sbjct: 313 LEQLNGFELAGRPMKVG----NVTERTDLIQGPSLLD 345
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 22/162 (13%)
Query: 12 IVVTKCTYPFL--STPLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFG 69
I +++ PF+ ++PL + + +TP+ ++ +S ++ + + F G
Sbjct: 126 ITLSRSRQPFIKGASPLTN--RSDELTPE--ERDARTIFCMQLSQRIRARDLEEFFSSVG 181
Query: 70 PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGR-- 127
++ + + T++ KG A+VE+ PE+ L+L ++G L G I V + R
Sbjct: 182 KVQDVRLITCNKTRRFKGIAYVEFKDPESVTLAL-GLSGQKLLGVPIVVQHTQAEKNRMG 240
Query: 128 ---PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
P+ MP+ Q+ R+YV S+ ++TEE +K
Sbjct: 241 NSMPNLMPKGQTG----------PMRLYVGSLLFNITEEMLK 272
>gi|291245052|ref|XP_002742405.1| PREDICTED: MGC81970 protein-like isoform 2 [Saccoglossus
kowalevskii]
Length = 444
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
++ P+R+YVGS+ F + E+ +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 139 GNSGPMRLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDA 198
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 199 KKALEQLNGFELAGRPMKV 217
>gi|195487862|ref|XP_002092072.1| GE11871 [Drosophila yakuba]
gi|194178173|gb|EDW91784.1| GE11871 [Drosophila yakuba]
Length = 300
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+N VYVG ++ E+ E + AF+PFG I I M D +Q+H+GFAF+EY+ E A
Sbjct: 2 ANDKRTVYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 AAIDNMNDSELCGRTIRVNL 81
>gi|195430772|ref|XP_002063422.1| GK21899 [Drosophila willistoni]
gi|194159507|gb|EDW74408.1| GK21899 [Drosophila willistoni]
Length = 223
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VYVG ++ E+ E + AF+PFG I I M D +QKH+GFAF+EY+ E A
Sbjct: 2 SNDKRTVYVGGLADEVTERLLNNAFIPFGDIADIQMPVDYESQKHRGFAFIEYEQFEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 SAIDNMNDSELCGRTIRVNL 81
>gi|10801574|dbj|BAB16700.1| TIA-1 like protein [Bombyx mori]
Length = 285
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P ++++ ++VG +S E++ + +R+AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFP-------HVQVGRPSNMPQAQSVIDEITEEAKLYN 149
A+ +++ MNG LG R+I+ ++ V G PS+ Q DE+ ++ N
Sbjct: 148 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTN 207
Query: 150 -RIYVASIHPDLTEEDI 165
+Y ++ E++
Sbjct: 208 TTVYCGGFTSNIITEEL 224
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 40 NSNSPLR--VYVGSISFEL-KEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
N +SP VY G + + E+ ++ F FG I+ I + D KG+AF+ +
Sbjct: 201 NQSSPTNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRD------KGYAFIRFTTK 254
Query: 97 EAAQLSLEQMNGVMLGGRNIK 117
EAA ++E + + G +K
Sbjct: 255 EAAAHAIEATHNTEISGHTVK 275
>gi|194756974|ref|XP_001960745.1| GF11346 [Drosophila ananassae]
gi|190622043|gb|EDV37567.1| GF11346 [Drosophila ananassae]
Length = 394
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VYVG ++ E+ E + AF+PFG I I M D +Q+H+GFAF+EY+ E A
Sbjct: 96 SNDKRTVYVGGLADEVTERLLNNAFIPFGDIADIQMPVDYESQRHRGFAFIEYEQGEDAA 155
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 156 SAIDNMNDSELCGRTIRVNL 175
>gi|47212427|emb|CAF93583.1| unnamed protein product [Tetraodon nigroviridis]
Length = 500
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
PLR+YVGS+ F + E+ +R F PFG I++I + D T + KG+ F+ + E A+ +L
Sbjct: 230 PLRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMVDSDTGRSKGYGFITFADAECAKKAL 289
Query: 104 EQMNGVMLGGRNIKV 118
EQ+NG L GR +KV
Sbjct: 290 EQLNGFELAGRPMKV 304
Score = 35.8 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 36 TPDVNSNSPLRVYVGSISF--ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+P SP+R +S+ L+ + F G ++ + M D +++ KG A++E+
Sbjct: 117 SPARKEKSPVRREKSPVSWLPGLRPRDLEDFFSAVGKVRDVRMISDRSSRRSKGIAYIEF 176
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
+ L++ + G L G I V + R + A + + + + R+YV
Sbjct: 177 VEASSVPLAI-GLTGQRLLGVPIIVQASQAEKNRAAAAAAAAAAANNLQKGMMGPLRLYV 235
Query: 154 ASIHPDLTEEDIK 166
S+H ++TEE ++
Sbjct: 236 GSLHFNITEEMLR 248
>gi|426201409|gb|EKV51332.1| hypothetical protein AGABI2DRAFT_189584 [Agaricus bisporus var.
bisporus H97]
Length = 563
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
+ P V++ +YVGS+ F L E I+Q F FG ++ +++ D +T + KG+AFV+Y
Sbjct: 327 LPPGVSAPHGAILYVGSLHFNLTESDIKQVFEVFGELEFVDLHRDAMTGRSKGYAFVQYK 386
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPH 122
E A+++L+QM G L GR ++V+ H
Sbjct: 387 RAEDARMALQQMEGFELAGRTLRVNTVH 414
>gi|409083550|gb|EKM83907.1| hypothetical protein AGABI1DRAFT_110515 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 563
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
+ P V++ +YVGS+ F L E I+Q F FG ++ +++ D +T + KG+AFV+Y
Sbjct: 327 LPPGVSAPHGAILYVGSLHFNLTESDIKQVFEVFGELEFVDLHRDAMTGRSKGYAFVQYK 386
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPH 122
E A+++L+QM G L GR ++V+ H
Sbjct: 387 RAEDARMALQQMEGFELAGRTLRVNTVH 414
>gi|159474538|ref|XP_001695382.1| nuclear cap-binding protein [Chlamydomonas reinhardtii]
gi|158275865|gb|EDP01640.1| nuclear cap-binding protein [Chlamydomonas reinhardtii]
Length = 143
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+N +YVG + + E T+ AFLPFG IK +NM D T H+GF FVEY+ + A
Sbjct: 12 GTNPKTTLYVGGLEESVNEATLHAAFLPFGEIKEVNMPIDHATGTHRGFGFVEYEEKDDA 71
Query: 100 QLSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR +KV++
Sbjct: 72 AAAIDNMNNAELFGRVLKVNY 92
>gi|114652071|ref|XP_522797.2| PREDICTED: probable RNA-binding protein 23 isoform 12 [Pan
troglodytes]
Length = 408
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T KG+ F+ + E A
Sbjct: 224 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECA 283
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 284 RRALEQLNGFELAGRPMRV 302
>gi|114652057|ref|XP_001159475.1| PREDICTED: probable RNA-binding protein 23 isoform 10 [Pan
troglodytes]
Length = 442
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T KG+ F+ + E A
Sbjct: 258 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|194880756|ref|XP_001974528.1| GG21795 [Drosophila erecta]
gi|190657715|gb|EDV54928.1| GG21795 [Drosophila erecta]
Length = 300
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+N VYVG ++ E+ E + AF+PFG I I M D +Q+H+GFAF+EY+ E A
Sbjct: 2 ANDKRTVYVGGLADEVTERLLNNAFIPFGDIADIQMPADFESQRHRGFAFIEYEQSEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 AAIDNMNDSELCGRTIRVNL 81
>gi|114652069|ref|XP_001159523.1| PREDICTED: probable RNA-binding protein 23 isoform 11 [Pan
troglodytes]
Length = 426
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T KG+ F+ + E A
Sbjct: 242 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|390341388|ref|XP_799104.3| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like
[Strongylocentrotus purpuratus]
Length = 313
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+SN+ YVG ++ E+ E T+ AF+PFG I I + D T+KH+GFAFVE++ E
Sbjct: 3 SSNTKRIAYVGGLAEEVTEKTLHAAFIPFGDIMDIQIPLDYETEKHRGFAFVEFEFAEDC 62
Query: 100 QLSLEQMNGVMLGGRNIKVHFP 121
S++ MN L GR I+V+
Sbjct: 63 AASIDNMNDSELFGRTIRVNLA 84
>gi|410261842|gb|JAA18887.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349771|gb|JAA41489.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T KG+ F+ + E A
Sbjct: 258 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|410218752|gb|JAA06595.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307724|gb|JAA32462.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307728|gb|JAA32464.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T KG+ F+ + E A
Sbjct: 258 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>gi|410261840|gb|JAA18886.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349769|gb|JAA41488.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349773|gb|JAA41490.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T KG+ F+ + E A
Sbjct: 242 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|410218750|gb|JAA06594.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307726|gb|JAA32463.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T KG+ F+ + E A
Sbjct: 242 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|395859409|ref|XP_003802032.1| PREDICTED: probable RNA-binding protein 23 [Otolemur garnettii]
Length = 449
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+ ++VGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 263 GSSGPMHLFVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 322
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 323 RRALEQLNGFELAGRPMKV 341
>gi|52076765|dbj|BAD45709.1| hypothetical protein [Oryza sativa Japonica Group]
gi|52076787|dbj|BAD45731.1| hypothetical protein [Oryza sativa Japonica Group]
gi|52076962|dbj|BAD45972.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125596715|gb|EAZ36495.1| hypothetical protein OsJ_20826 [Oryza sativa Japonica Group]
Length = 214
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMS-WDPITQKHKGFAFVEYDIP 96
DVN VYVG+I+F E +R A GP++S+ ++ DP T K KG+AFVEY
Sbjct: 3 DVNCRCSRVVYVGNIAFHATEAELRDACELIGPVRSLRLAALDPATNKRKGYAFVEYADD 62
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPS 129
E A+ +L ++G +L GR ++V RPS
Sbjct: 63 ETARSALRNLHGHLLRGRELRVGL----AARPS 91
>gi|442761059|gb|JAA72688.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Ixodes ricinus]
Length = 235
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + ED ++ F PFG I I + D T + KG+ F+ + E A+ +
Sbjct: 143 GPMRLYVGSLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKA 202
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 203 LEQLNGFELAGRPMKV 218
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + D T++ KG A+VE+ E+ L++ +
Sbjct: 45 VFCMQLSQRIRARDLEEFFSAVGKVRDVRLIMDNKTRRSKGIAYVEFQDVESVPLAM-GL 103
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLY-NRIYVASIHPDLTEEDI 165
NG L G I + Q R Q+ S + + R+YV S+H ++TE+ +
Sbjct: 104 NGQKLFG--IPIVVQPTQAERNRAAAQSASTSSSTLQRGNIGPMRLYVGSLHFNITEDML 161
Query: 166 K 166
K
Sbjct: 162 K 162
>gi|296214508|ref|XP_002753659.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Callithrix
jacchus]
Length = 439
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 257 GTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 316
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +++Q+NG L GR ++V
Sbjct: 317 RRAMDQLNGFELAGRPMRV 335
>gi|256082942|ref|XP_002577710.1| splicing factor [Schistosoma mansoni]
gi|360043601|emb|CCD81147.1| putative splicing factor [Schistosoma mansoni]
Length = 327
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + P+++Y+GS+ + + E+ ++ F PFG I+ I + DP T + +G+ FV Y
Sbjct: 59 PSQQNRGPMKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNS 118
Query: 97 EAAQLSLEQMNGVMLGGRNIKVH 119
+ A+ +L+Q+NG L GR +KV+
Sbjct: 119 DDAKKALDQLNGFELAGRPMKVN 141
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
D T++ KG A+VE+ E+AQL+L + G L G I++ H + R S P
Sbjct: 1 MDNKTKRSKGIAYVEFREVESAQLAL-GLTGTRLLGVPIQIQQSHAEKNRVSATPS---- 55
Query: 138 IDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+ +++ + ++Y+ S+H ++TEE +K
Sbjct: 56 LPRPSQQNRGPMKLYIGSLHYNITEEMLK 84
>gi|226469234|emb|CAX70096.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 327
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + P+++Y+GS+ + + E+ ++ F PFG I+ I + DP T + +G+ FV Y
Sbjct: 59 PSQQNKGPMKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNS 118
Query: 97 EAAQLSLEQMNGVMLGGRNIKVH 119
+ A+ +L+Q+NG L GR +KV+
Sbjct: 119 DDAKKALDQLNGFELAGRPMKVN 141
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
D T++ KG A+VE+ E+AQL+L + G L G I++ H + R S P
Sbjct: 1 MDNKTKRSKGIAYVEFREVESAQLAL-GLTGTRLLGVPIQIQQSHAEKNRVSATPS---- 55
Query: 138 IDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+ +++ K ++Y+ S+H ++TEE +K
Sbjct: 56 LPRPSQQNKGPMKLYIGSLHYNITEEMLK 84
>gi|170046410|ref|XP_001850759.1| peptidyl-prolyl cis-trans isomerase E [Culex quinquefasciatus]
gi|167869182|gb|EDS32565.1| peptidyl-prolyl cis-trans isomerase E [Culex quinquefasciatus]
Length = 308
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+N VYVG +S E+ E I AF+PFG + I M D +QKH+GFAF+E++ E A
Sbjct: 2 ANDKRTVYVGGLSDEVTEKLINDAFIPFGDLVDIQMPVDYESQKHRGFAFIEFENAEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQ-VGRPSNMP 132
+++ MN L GR ++V+ Q + SN P
Sbjct: 62 AAVDNMNDSELCGRTVRVNVAKPQRIKEGSNKP 94
>gi|427792527|gb|JAA61715.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 497
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + E+ ++ F PFG I I + D T + KG+ F+ + E A+ +
Sbjct: 238 GPMRLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKA 297
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ QA S +D
Sbjct: 298 LEQLNGFELAGRPMKVG----HVTERTDVSQAPSFLD 330
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + D T++ KG A+VE+ E+ L++ +
Sbjct: 140 VFCMQLSQRIRARDLEEFFSAVGKVRDVRLIMDNKTRRSKGIAYVEFQDVESVPLAM-GL 198
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLY-NRIYVASIHPDLTEEDI 165
NG L G I + Q R Q S + + + R+YV S+H ++TEE +
Sbjct: 199 NGQKLFG--IPIVVQPTQAERNRAAAQNASTSNSTLQRGNVGPMRLYVGSLHFNITEEML 256
Query: 166 K 166
K
Sbjct: 257 K 257
>gi|256082940|ref|XP_002577709.1| splicing factor [Schistosoma mansoni]
gi|360043602|emb|CCD81148.1| putative splicing factor [Schistosoma mansoni]
Length = 463
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + P+++Y+GS+ + + E+ ++ F PFG I+ I + DP T + +G+ FV Y
Sbjct: 195 PSQQNRGPMKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNS 254
Query: 97 EAAQLSLEQMNGVMLGGRNIKVH 119
+ A+ +L+Q+NG L GR +KV+
Sbjct: 255 DDAKKALDQLNGFELAGRPMKVN 277
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V +S +++ + F G I+ + + D T++ KG A+VE+ E+AQL+L +
Sbjct: 106 VFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVESAQLAL-GL 164
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G L G I++ H + R S P + +++ + ++Y+ S+H ++TEE +K
Sbjct: 165 TGTRLLGVPIQIQQSHAEKNRVSATPS----LPRPSQQNRGPMKLYIGSLHYNITEEMLK 220
>gi|301624824|ref|XP_002941698.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Xenopus
(Silurana) tropicalis]
Length = 301
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAFVE+++PE A +++ M
Sbjct: 8 LYVGGLAEEVDEKILHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELPEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|395863338|ref|XP_003803853.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Otolemur
garnettii]
gi|395863342|ref|XP_003803855.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Otolemur
garnettii]
Length = 487
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ + E +R F PFG ++SI + D T + KG+ F+ + E A+ +
Sbjct: 206 GPMRLYVGSLHLNITEAMLRGIFEPFGRLESIQLMKDSETGRSKGYGFITFSDSECAKKA 265
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVG 126
LEQ+NG+ L GR +KV HV G
Sbjct: 266 LEQLNGLELAGRPMKVG--HVTEG 287
>gi|427794973|gb|JAA62938.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 509
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + E+ ++ F PFG I I + D T + KG+ F+ + E A+ +
Sbjct: 250 GPMRLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKA 309
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
LEQ+NG L GR +KV V +++ QA S +D
Sbjct: 310 LEQLNGFELAGRPMKVG----HVTERTDVSQAPSFLD 342
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + D T++ KG A+VE+ E+ L++ +
Sbjct: 152 VFCMQLSQRIRARDLEEFFSAVGKVRDVRLIMDNKTRRSKGIAYVEFQDVESVPLAM-GL 210
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLY-NRIYVASIHPDLTEEDI 165
NG L G I + Q R Q S + + + R+YV S+H ++TEE +
Sbjct: 211 NGQKLFG--IPIVVQPTQAERNRAAAQNASTSNSTLQRGNVGPMRLYVGSLHFNITEEML 268
Query: 166 K 166
K
Sbjct: 269 K 269
>gi|226469236|emb|CAX70097.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 463
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + P+++Y+GS+ + + E+ ++ F PFG I+ I + DP T + +G+ FV Y
Sbjct: 195 PSQQNKGPMKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNS 254
Query: 97 EAAQLSLEQMNGVMLGGRNIKVH 119
+ A+ +L+Q+NG L GR +KV+
Sbjct: 255 DDAKKALDQLNGFELAGRPMKVN 277
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V +S +++ + F G I+ + + D T++ KG A+VE+ E+AQL+L +
Sbjct: 106 VFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVESAQLAL-GL 164
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G L G I++ H + R S P + +++ K ++Y+ S+H ++TEE +K
Sbjct: 165 TGTRLLGVPIQIQQSHAEKNRVSATPS----LPRPSQQNKGPMKLYIGSLHYNITEEMLK 220
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V++ V+VG +S E+ +R+AF PFG + + D T K KG+ FV Y E
Sbjct: 127 VDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREE 186
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVG---RPSNMPQAQSVIDEITEEAKLYN-RIYVA 154
A+ ++EQMNG LG R I+ ++ + G +P++ + DEI + N +YV
Sbjct: 187 AERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPTHYN--EKSFDEIYNQTSGDNTSVYVG 244
Query: 155 SIHPDLTEEDIK 166
+I +L+E++I+
Sbjct: 245 NI-ANLSEDEIR 255
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L ED IRQAF +G I + + K +G+AFV++D +AA ++ QM
Sbjct: 241 VYVGNIA-NLSEDEIRQAFASYGRISEVRIF------KMQGYAFVKFDNKDAAAKAIVQM 293
Query: 107 NGVMLGGRNIK 117
N +GG+ ++
Sbjct: 294 NNQEVGGQLVR 304
>gi|425770690|gb|EKV09156.1| RNA splicing factor (Pad-1), putative [Penicillium digitatum Pd1]
gi|425772037|gb|EKV10463.1| RNA splicing factor (Pad-1), putative [Penicillium digitatum PHI26]
Length = 556
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ F + ED + F PFG ++ + + D T + KG+AFV++ PE A+ +LE+
Sbjct: 266 RLYVGNVHFSITEDDLTNVFEPFGELEFVQLQKDE-TGRSKGYAFVQFANPEQARDALEK 324
Query: 106 MNGVMLGGRNIKVHF------PHVQVGRPS 129
MNG L GR I+V P RPS
Sbjct: 325 MNGFELAGRAIRVGLGNDKFTPDAHANRPS 354
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 36 TPDVNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+P++N + R ++V ++ L+ + F GP+K + D ++ + KG +VE+
Sbjct: 155 SPELNEDERDRRTIFVQQLAARLRIKDLFTFFEKAGPVKDAQIVKDRVSGRSKGVGYVEF 214
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
E+ ++ ++ G ML G I + R + P+A + + ++R+YV
Sbjct: 215 KNEESVAAAI-RLTGQMLLGIPIIAQLTEAEKNRQARNPEATAG----NQHTAPFHRLYV 269
Query: 154 ASIHPDLTEEDI 165
++H +TE+D+
Sbjct: 270 GNVHFSITEDDL 281
>gi|259648115|dbj|BAI40365.1| TIA-1 homologue [Bombyx mori]
Length = 402
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P ++++ ++VG +S E++ + +R+AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFP-------HVQVGRPSNMPQAQSVIDEITEEAKLYN 149
A+ +++ MNG LG R+I+ ++ V G PS+ Q DE+ ++ N
Sbjct: 148 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTN 207
Query: 150 -RIYVASIHPDLTEEDI 165
+Y ++ E++
Sbjct: 208 TTVYCGGFTSNIITEEL 224
>gi|48146631|emb|CAG33538.1| RNPC4 [Homo sapiens]
Length = 423
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ + + E A
Sbjct: 242 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGLITFSDSECA 301
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 302 RRALEQLNGFELAGRPMRV 320
>gi|255726450|ref|XP_002548151.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134075|gb|EER33630.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 472
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 31 QVGPITPDVNSNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
Q I +NS PL ++VG +S E+ ++ +R AF FG +K ++ WD T + +G+
Sbjct: 160 QSAAIASTLNSEEPLFNIFVGDLSPEVNDEGLRNAFSKFGSLKQAHVMWDMQTSRSRGYG 219
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
FV + A+L+L+ MNG LGGR I+ ++
Sbjct: 220 FVTFSEQADAELALQTMNGEWLGGRAIRCNW 250
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 19/124 (15%)
Query: 47 VYVGSISFELKEDTIRQAFLPFG-PIKSINMSWDPITQKHKG---FAFVEYDIPEAAQLS 102
+YVG++ E+ ++ F G PIK+I + + K+K +AF+EYD + A ++
Sbjct: 84 LYVGNLPKSASEEMVKDLFSVGGNPIKTIKL----LNDKNKAGFNYAFIEYDSNDTADMA 139
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTE 162
L +NG ++ IKV++ + Q+ ++ + E L+N I+V + P++ +
Sbjct: 140 LNTLNGRVIDESEIKVNWAY----------QSAAIASTLNSEEPLFN-IFVGDLSPEVND 188
Query: 163 EDIK 166
E ++
Sbjct: 189 EGLR 192
>gi|312370863|gb|EFR19173.1| hypothetical protein AND_22952 [Anopheles darlingi]
Length = 259
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VY+G +S E+ + I AF+PFG + I M D +QKH+GFAF+E++ E A
Sbjct: 2 SNDKRTVYIGGLSEEVTDKLITDAFIPFGDLVDIQMPIDYESQKHRGFAFIEFENAEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQ-VGRPSNMP 132
+++ MN L GR I+V+ Q + SN P
Sbjct: 62 AAVDNMNDSELCGRTIRVNTARPQRIKEGSNRP 94
>gi|38141765|dbj|BAD00701.1| TIA-1 homologue [Bombyx mori]
Length = 388
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P ++++ ++VG +S E++ + +R+AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFP-------HVQVGRPSNMPQAQSVIDEITEEAKLYN 149
A+ +++ MNG LG R+I+ ++ V G PS+ Q DE+ ++ N
Sbjct: 148 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTN 207
Query: 150 -RIYVASIHPDLTEEDI 165
+Y ++ E++
Sbjct: 208 TTVYCGGFTSNIITEEL 224
>gi|168033388|ref|XP_001769197.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679462|gb|EDQ65909.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 83
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 50/78 (64%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N VYVG +S+E EDT+++AF+ FG + S+ + +D + + +GF FV + P +A +
Sbjct: 2 NDANSVYVGGLSYESSEDTVKKAFMEFGEVVSVKIVYDRESGESRGFGFVSFTNPRSATM 61
Query: 102 SLEQMNGVMLGGRNIKVH 119
++ M+G + GR I+V+
Sbjct: 62 AIRDMDGGQIEGRTIRVN 79
>gi|118918389|ref|NP_001036895.2| TIA1 cytotoxic granule-associated RNA binding protein [Bombyx mori]
gi|111608113|gb|ABH10800.1| nucleolysin TIAR protein [Bombyx mori]
Length = 402
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P ++++ ++VG +S E++ + +R+AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFP-------HVQVGRPSNMPQAQSVIDEITEEAKLYN 149
A+ +++ MNG LG R+I+ ++ V G PS+ Q DE+ ++ N
Sbjct: 148 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTN 207
Query: 150 -RIYVASIHPDLTEEDI 165
+Y ++ E++
Sbjct: 208 TTVYCGGFTSNIITEEL 224
>gi|443896055|dbj|GAC73399.1| transcriptional coactivator CAPER [Pseudozyma antarctica T-34]
Length = 662
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GP P N+ R+YVGS+ F L ++ ++ F PFG I+ +++ +P T K KGF F++
Sbjct: 406 GPNMP----NTEARLYVGSLHFSLTDENVKAVFEPFGEIEYVDLHREPGTGKSKGFCFIQ 461
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ + A+ + E MNG L GR I+V
Sbjct: 462 FKHADDARKAHEAMNGFELAGRAIRV 487
>gi|430811054|emb|CCJ31450.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 484
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 41 SNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S++P R+YVG+I F L ED +RQ F PFG ++ + + +P T + +G+ FV+ P A
Sbjct: 208 SDAPFHRLYVGNIHFNLTEDDLRQIFEPFGELEFVQLQKEPDTGRSRGYGFVQ--DPAQA 265
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LE+MNG L GR I+V
Sbjct: 266 RDALEKMNGFELAGRAIRV 284
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L+ + F GP++ + D ++ + KG +VE+ E+ ++ M
Sbjct: 114 VFVQQLAARLRTRELIAFFEKVGPVRDAQVVKDRVSGRSKGVGYVEFRDEESVHKAI-NM 172
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL-YNRIYVASIHPDLTEEDI 165
G L G I V + R + +A++++ ++ ++R+YV +IH +LTE+D+
Sbjct: 173 TGQRLLGIPIIVQLTEAEKNRQA---KAEAMLSSGGRQSDAPFHRLYVGNIHFNLTEDDL 229
Query: 166 K 166
+
Sbjct: 230 R 230
>gi|395863336|ref|XP_003803852.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Otolemur
garnettii]
gi|395863340|ref|XP_003803854.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Otolemur
garnettii]
Length = 514
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P+R+YVGS+ + E +R F PFG ++SI + D T + KG+ F+ + E A+ +L
Sbjct: 234 PMRLYVGSLHLNITEAMLRGIFEPFGRLESIQLMKDSETGRSKGYGFITFSDSECAKKAL 293
Query: 104 EQMNGVMLGGRNIKV 118
EQ+NG+ L GR +KV
Sbjct: 294 EQLNGLELAGRPMKV 308
>gi|259648117|dbj|BAI40366.1| TIA-1 homologue [Bombyx mori]
Length = 402
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P ++++ ++VG +S E++ + +R+AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFP-------HVQVGRPSNMPQAQSVIDEITEEAKLYN 149
A+ +++ MNG LG R+I+ ++ V G PS+ Q DE+ ++ N
Sbjct: 148 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTN 207
Query: 150 -RIYVASIHPDLTEEDI 165
+Y ++ E++
Sbjct: 208 TTVYCGGFTSNIITEEL 224
>gi|426232774|ref|XP_004010395.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Ovis aries]
Length = 463
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T KG+ F+ + E A
Sbjct: 273 GSGGPVRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSETGCSKGYGFITFSDSECA 332
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +++
Sbjct: 333 RRALEQLNGFELAGRPMRI 351
>gi|405968843|gb|EKC33872.1| Peptidyl-prolyl cis-trans isomerase E [Crassostrea gigas]
Length = 302
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG ++ E+ E T+ AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 9 VYVGGLAEEVDEKTLHAAFIPFGDILDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 68
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N + GR ++V+ + +P + + S
Sbjct: 69 NDSEMFGRTLRVN-----MAKPMKLKEGSS 93
>gi|426232776|ref|XP_004010396.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Ovis aries]
Length = 447
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I +I + D T KG+ F+ + E A
Sbjct: 257 GSGGPVRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSETGCSKGYGFITFSDSECA 316
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +++
Sbjct: 317 RRALEQLNGFELAGRPMRI 335
>gi|300193098|pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 66 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 125
Query: 107 NGVMLGGRNIKVHFP 121
N L GR I+V+
Sbjct: 126 NESELFGRTIRVNLA 140
>gi|405963791|gb|EKC29337.1| RNA-binding protein 39 [Crassostrea gigas]
Length = 557
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+R+YVGS+ F + E+ +R F PFG I I + D T + +G+ F+ + E A+ +
Sbjct: 258 GPMRLYVGSLHFNITEEMLRGIFEPFGKIDDIKLIRDHETNRSQGYGFITFHDSEDAKKA 317
Query: 103 LEQMNGVMLGGRNIKV 118
LEQ+NG L GR +KV
Sbjct: 318 LEQLNGFELAGRPMKV 333
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 24 TPLYDLKQVGP-ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT 82
+P+ +Q GP +TP+ V+ +S ++ + + F G ++ + + D T
Sbjct: 143 SPMRYTRQPGPELTPE--ERDARTVFCMQLSARIRPRDLEEFFSSVGKVRDVRLIMDNKT 200
Query: 83 QKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ-----VGRPSNMPQAQSV 137
++ KG ++VE+ ++ L++ N +LG + + H Q VG P+++
Sbjct: 201 RRSKGISYVEFQDTDSVPLAIGLTNQKLLG---VPIIVQHSQAEKNRVGNPTSI------ 251
Query: 138 IDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+T+ R+YV S+H ++TEE ++
Sbjct: 252 ---LTKGNIGPMRLYVGSLHFNITEEMLR 277
>gi|341886179|gb|EGT42114.1| CBN-CYN-13 protein [Caenorhabditis brenneri]
Length = 334
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N +YVG + E+ E + AF+PFG + +I++ D T KH+GF FVE+D+ E A +
Sbjct: 8 NRKRTLYVGGFTEEVTEKVLMAAFIPFGDVVAISIPMDYETGKHRGFGFVEFDMAEDAAM 67
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
+++ MN L G+ I+V+F P ++Q + E K Y R A+ D
Sbjct: 68 AIDNMNESELFGKTIRVNFARP----PKATERSQKPVWADDEWLKKYGRGGEAAGEDD 121
>gi|195110141|ref|XP_001999640.1| GI22960 [Drosophila mojavensis]
gi|193916234|gb|EDW15101.1| GI22960 [Drosophila mojavensis]
Length = 475
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
TP + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 86 TPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVK 145
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G RNI+ ++
Sbjct: 146 KAEAENAIQSMNGQWIGSRNIRTNW 170
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFGKMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ASTALTAMNKRVFLDKEIKVNW----ATSPGNTPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 40 NSNSPLR--VYVGSISFE-LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
N +SP VY G + ++ + + F+ FGPI+ + + K KGFAF+++
Sbjct: 217 NQSSPTNTTVYCGGFPPNVISDELMHKHFMQFGPIQDVRVF------KDKGFAFIKFVTK 270
Query: 97 EAAQLSLEQMNGVMLGGRNIK 117
EAA ++E + + G ++K
Sbjct: 271 EAAARAIEHTHNSEVHGNHVK 291
>gi|255941952|ref|XP_002561745.1| Pc16g14480 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586368|emb|CAP94118.1| Pc16g14480 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 562
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ F + E+ + F PFG ++ + + D T + KG+AFV++ PE A+ +LE+
Sbjct: 273 RLYVGNVHFSITEEDLTNVFEPFGELEFVQLQKDE-TGRSKGYAFVQFANPEQARDALEK 331
Query: 106 MNGVMLGGRNIKVHF------PHVQVGRPS----NMPQAQ 135
MNG L GR I+V P RPS N P Q
Sbjct: 332 MNGFELAGRAIRVGLGNDKFTPDTHANRPSGASTNQPNFQ 371
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 36 TPDVNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+P++N + R ++V ++ L+ + F GP+K + D ++ + KG +VE+
Sbjct: 162 SPELNEDERDRRTIFVQQLAARLRIKDLFTFFEKAGPVKDAQIVKDRVSGRSKGVGYVEF 221
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
E+ ++ ++ G ML G I + R + ++ S ++R+YV
Sbjct: 222 KNEESVAAAI-RLTGQMLLGIPIIAQLTEAEKNRQARNTESTSG----HHHTAPFHRLYV 276
Query: 154 ASIHPDLTEEDI 165
++H +TEED+
Sbjct: 277 GNVHFSITEEDL 288
>gi|358342556|dbj|GAA49996.1| RNA-binding protein 39 [Clonorchis sinensis]
Length = 730
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + P+++Y+GS+ + + E+ ++ F PFG I I + DP T + +G+ FV Y
Sbjct: 170 PTQQNRGPMKLYIGSLHYNITEEMLKGIFEPFGKIDDIKLIKDPATGRSQGYGFVTYANS 229
Query: 97 EAAQLSLEQMNGVMLGGRNIKVH 119
+ A+ +L+Q+NG L GR +KV+
Sbjct: 230 DDAKKALDQLNGFELAGRPMKVN 252
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 78/152 (51%), Gaps = 11/152 (7%)
Query: 16 KCTYPFLSTPLYDLK-QVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSI 74
K + L+ LY + ++ P D + V+V +S +++ + F G I+ +
Sbjct: 54 KLSLSILAVELYSCRPELTPEERDART-----VFVWQLSARIRQRDLEDFFTSVGKIRDV 108
Query: 75 NMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA 134
+ D T++ KG A+VE+ E+AQL+L + G L G I++ H + R + +P
Sbjct: 109 RLIMDNKTKRSKGIAYVEFREVESAQLAL-GLTGTRLLGVPIQIQQSHAEKNRMNAIPS- 166
Query: 135 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+ + T++ + ++Y+ S+H ++TEE +K
Sbjct: 167 ---VPKPTQQNRGPMKLYIGSLHYNITEEMLK 195
>gi|428175470|gb|EKX44360.1| hypothetical protein GUITHDRAFT_50524, partial [Guillardia theta
CCMP2712]
Length = 81
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG + E+ DT+R AF+PFG + +N+ D T KH+GF FVEY+ P+ A ++ M
Sbjct: 4 LYVGGLDEEVNVDTLRAAFIPFGELVDVNIPLDNETGKHRGFGFVEYEFPDDAAEAIFNM 63
Query: 107 NGVMLGGRNIKVHF 120
N L GR + V+
Sbjct: 64 NNGELNGRVLSVNL 77
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+++YVG++S+E+ ED +RQAF G + S+++ D + + KGF FVE AQ ++E
Sbjct: 1 MKIYVGNLSYEVNEDDLRQAFEQLGKVDSVSIINDKYSGRSKGFGFVEMSSDAEAQAAIE 60
Query: 105 QMNGVMLGGRNIKVH 119
+NG L GR I V+
Sbjct: 61 GLNGKELKGRAINVN 75
>gi|56755023|gb|AAW25694.1| SJCHGC05278 protein [Schistosoma japonicum]
Length = 323
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG +S ++ +R AF+PFG I SINM D T+KH+GFAFVE++ E A +++ M
Sbjct: 22 IYVGGLSEQVDVPLVRAAFIPFGDIVSINMPMDYQTEKHRGFAFVEFEEVEDAMSAIDNM 81
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N + GR I+V+ V RP + + S
Sbjct: 82 NESEIFGRTIRVN-----VARPVRIREGWS 106
>gi|307189573|gb|EFN73937.1| Peptidyl-prolyl cis-trans isomerase E [Camponotus floridanus]
Length = 293
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ N+ +YVG ++ E+ E + AF+PFG I + + D ++KH+GFAF+E+++ E
Sbjct: 1 MSGNTKRTIYVGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFEMAED 60
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A +++ MN L GR I+V+ + +P + + S
Sbjct: 61 AAAAIDNMNDSELFGRTIRVN-----IAKPQKIKEGSS 93
>gi|332375218|gb|AEE62750.1| unknown [Dendroctonus ponderosae]
Length = 223
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG ++ E+ E+ ++ AF+PFG I I + D ++KH+GFAF+E++ E A +++ M
Sbjct: 9 VYVGGLAEEICEEVLKAAFIPFGDIVDIQIPLDYESEKHRGFAFIEFETSEDAGAAVDNM 68
Query: 107 NGVMLGGRNIKVHFPHVQ 124
N L GR I+V+ Q
Sbjct: 69 NDAELFGRTIRVNLAKPQ 86
>gi|302829787|ref|XP_002946460.1| hypothetical protein VOLCADRAFT_79186 [Volvox carteri f.
nagariensis]
gi|300268206|gb|EFJ52387.1| hypothetical protein VOLCADRAFT_79186 [Volvox carteri f.
nagariensis]
Length = 186
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+N +YVG + + E T+ AFLPFG IK +N+ D T H+GF FVEY+ E A
Sbjct: 13 GTNPKTTLYVGGLEETVNEATLHAAFLPFGEIKEVNIPLDHATGTHRGFGFVEYEEKEDA 72
Query: 100 QLSLEQMNGVMLGGRNIKVHF 120
+++ M+ L GR +KV++
Sbjct: 73 AAAIDNMHNAELFGRVLKVNY 93
>gi|148236416|ref|NP_001090502.1| peptidylprolyl isomerase E (cyclophilin E) [Xenopus laevis]
gi|114107971|gb|AAI23372.1| MGC154898 protein [Xenopus laevis]
Length = 294
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G ++ E+ E + AF+PFG I I + D T+KH+GFAFVE+++PE A +++ M
Sbjct: 1 MYLGGLAEEVDEKILHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELPEDAAAAIDNM 60
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 61 NESELFGRTIRVNL 74
>gi|312374824|gb|EFR22303.1| hypothetical protein AND_15459 [Anopheles darlingi]
Length = 560
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + + A+ +LE
Sbjct: 303 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDTDTGRSKGYGFITFHNADDAKKALE 362
Query: 105 QMNGVMLGGRNIKV 118
Q+NG L GR +KV
Sbjct: 363 QLNGFELAGRPMKV 376
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + + T++ KG A++E+ PE+ L+L
Sbjct: 207 VFCMQLSQRIRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFKDPESVALALGLS 266
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+LG I + H Q + + M + R+YV S+H ++TE+ ++
Sbjct: 267 GQRLLG---IPISVQHTQAEK-NRMANQPPPAPPKNPAGPM--RLYVGSLHFNITEDMLR 320
>gi|158298753|ref|XP_318916.3| AGAP009810-PA [Anopheles gambiae str. PEST]
gi|157014037|gb|EAA14200.3| AGAP009810-PA [Anopheles gambiae str. PEST]
Length = 306
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG +S E+ E I AF+PFG + I M D +QKH+GFAF+E++ E A +++ M
Sbjct: 8 VYVGGLSEEVTEKLITDAFIPFGDLVDIQMPIDYESQKHRGFAFIEFENAEDAAAAVDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQ-VGRPSNMP 132
N L GR I+V+ Q + SN P
Sbjct: 68 NDSELCGRTIRVNTAKPQRIKEGSNRP 94
>gi|328848768|gb|EGF97966.1| hypothetical protein MELLADRAFT_84111 [Melampsora larici-populina
98AG31]
Length = 695
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 11/93 (11%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF-- 90
GP P NS R+YVGS++F L +D +RQ F PFG I+ +++ D IT K KG+AF
Sbjct: 425 GPNDP----NSYARLYVGSLNFNLTDDDLRQVFQPFGDIEYVDLHRDQITGKSKGYAFTL 480
Query: 91 -----VEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ + A+ ++E+MNG L GR ++V
Sbjct: 481 LTCVNIRFKNMHDAKNAMEKMNGFQLAGRALRV 513
>gi|256088546|ref|XP_002580392.1| PPIase E; cyclophilin E; peptidyl-prolyl cis-trans isomerase
(PPIase) E; rotamase E [Schistosoma mansoni]
gi|360044542|emb|CCD82090.1| peptidyl-prolyl cis-trans isomerase (PPIase) E [Schistosoma
mansoni]
Length = 329
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG +S ++ +R AF+PFG I SINM D T+KH+GFAFVE++ E A +++ M
Sbjct: 28 IYVGGLSEQVDVPLVRAAFIPFGDIVSINMPMDYQTEKHRGFAFVEFEEVEDAMSAIDNM 87
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N + GR I+V+ V RP + + S
Sbjct: 88 NESEIFGRTIRVN-----VARPVRIREGWS 112
>gi|312066701|ref|XP_003136395.1| cytosolic cyclophilin [Loa loa]
gi|307768442|gb|EFO27676.1| cytosolic cyclophilin [Loa loa]
Length = 322
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
+T + N +YVG E+ E ++ F+PFG I SI++ D T KH+GF FVEY+
Sbjct: 3 LTTNFPHNKKRTLYVGGFGEEVNEKVLQAGFVPFGEIVSISIPLDYETGKHRGFGFVEYE 62
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPH 122
+ E A +++ MN L GR I+ +F
Sbjct: 63 LAEDAAAAIDNMNDSELFGRTIRCNFAR 90
>gi|195573327|ref|XP_002104645.1| GD18328 [Drosophila simulans]
gi|194200572|gb|EDX14148.1| GD18328 [Drosophila simulans]
Length = 824
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 68/129 (52%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASI 156
A+ +++ MNG +G R+I+ ++ ++ P + + + + +Y
Sbjct: 147 AEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKXXXXXEVYNQSSPTNTTVYCGGF 206
Query: 157 HPDLTEEDI 165
P++ +D+
Sbjct: 207 PPNVISDDL 215
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ASTALTAMNKRLFLEKEIKVNW----ATSPGNQPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
>gi|449488973|ref|XP_004186222.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase
E [Taeniopygia guttata]
Length = 271
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|253683353|dbj|BAH84828.1| TIA-1-related RNA binding protein [Spodoptera frugiperda]
Length = 283
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P ++++ ++VG +S E++ +R AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKTDTSNHHHIFVGDLSPEIETHILRDAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQ------VGRPSNMPQAQSVIDEITEEAKLYN- 149
A+ +++ MNG LG R+I+ ++ + G PS+ Q DE+ ++ N
Sbjct: 148 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPSKPNEGAPSSKRAKQPTFDEVYNQSSPTNT 207
Query: 150 RIYVASIHPDLTEEDI 165
+Y ++ ED+
Sbjct: 208 TVYCGGFTSNVITEDL 223
>gi|304445488|pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S + +YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A
Sbjct: 1 GSTTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 100 QLSLEQMNGVMLGGRNIKVHFP 121
+++ MN L GR I+V+
Sbjct: 61 AAAIDNMNESELFGRTIRVNLA 82
>gi|91086169|ref|XP_970456.1| PREDICTED: similar to TIA-1 homolog [Tribolium castaneum]
gi|270010230|gb|EFA06678.1| hypothetical protein TcasGA2_TC009608 [Tribolium castaneum]
Length = 364
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P ++++ ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKQDTSNHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV----IDEITEEAKLYN-RI 151
A+ +++ MNG LG R+I+ ++ + P AQ DE+ ++ N +
Sbjct: 148 AEAENAIQAMNGQWLGSRSIRTNWSTRKPPPPKTEKAAQRAKQPTFDEVYNQSSPTNCTV 207
Query: 152 YVASIHPDLTEE 163
Y LTE+
Sbjct: 208 YCGGFTTGLTED 219
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++ + ED + F GP+K + +P + +AFVE+ ++A +L
Sbjct: 7 PKTLYVGNLDPSVSEDLLCTLFSQIGPVKGCKIIREP---GNDPYAFVEFTNHQSASTAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MN + + +KV++ P N P+ ++ ++ I+V + P++ E
Sbjct: 64 AAMNKRLFLDKEMKVNW----ATSPGNQPK---------QDTSNHHHIFVGDLSPEIETE 110
Query: 164 DIK 166
++
Sbjct: 111 TLR 113
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 40 NSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
N +SP VY G + L ED +++ F FG I+ I + K KG+AF+++ E
Sbjct: 198 NQSSPTNCTVYCGGFTTGLTEDLMQKTFSQFGVIQDIRVF------KDKGYAFIKFATKE 251
Query: 98 AAQLSLEQMNGVMLGGRNIKVHF 120
+A ++E ++ + G+ +K +
Sbjct: 252 SATHAIETIHNTEINGQMVKCFW 274
>gi|295982539|pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
gi|295982540|pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 10 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 69
Query: 107 NGVMLGGRNIKVHFP 121
N L GR I+V+
Sbjct: 70 NESELFGRTIRVNLA 84
>gi|383862957|ref|XP_003706949.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase
E-like, partial [Megachile rotundata]
Length = 326
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 21 FLSTPLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP 80
F S + K+ I+ +++N+ +YVG ++ E+ E + AF+PFG I + + D
Sbjct: 16 FYSKHIQKNKKSINISYIMSTNTKRTIYVGGLAEEVDEKILHAAFIPFGEIVDVQIPLDY 75
Query: 81 ITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
++KH+GFAF+E++ E A +++ MN L GR I+V+ + +P + + S
Sbjct: 76 ESEKHRGFAFIEFESAEDAATAIDNMNDSELFGRTIRVN-----IAKPQKIKEGSS 126
>gi|332028166|gb|EGI68217.1| Peptidyl-prolyl cis-trans isomerase E [Acromyrmex echinatior]
Length = 293
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ N+ +YVG ++ E+ E + AF+PFG I + + D ++KH+GFAF+E++ E
Sbjct: 1 MSGNTKRTIYVGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFETAED 60
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A +++ MN L GR I+V+ + +P + + S
Sbjct: 61 AAAAIDNMNDSELFGRTIRVN-----IAKPQKIKEGSS 93
>gi|300193226|pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
gi|300193227|pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 5 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 64
Query: 107 NGVMLGGRNIKVHFP 121
N L GR I+V+
Sbjct: 65 NESELFGRTIRVNLA 79
>gi|328782599|ref|XP_003250169.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 1
[Apis mellifera]
Length = 331
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+++N+ +YVG ++ E+ E + AF+PFG I + + D ++KH+GFAF+E++ E
Sbjct: 39 MSTNTKRTIYVGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFESAED 98
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A +++ MN L GR I+V+ + +P + + S
Sbjct: 99 AAAAIDNMNDSELFGRTIRVN-----IAKPQKIKEGSS 131
>gi|350410727|ref|XP_003489121.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase
E-like [Bombus impatiens]
Length = 361
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+++N+ +YVG ++ E+ E + AF+PFG I + + D ++KH+GFAF+E++ E
Sbjct: 69 MSTNTKRTIYVGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFESAED 128
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A +++ MN L GR I+V+ + +P + + S
Sbjct: 129 AAAAIDNMNDSELFGRTIRVN-----IAKPQKIKEGSS 161
>gi|221115228|ref|XP_002154334.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Hydra
magnipapillata]
Length = 297
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G ++ E++E + AF+PFG I +N+ D T KH+GFAF+E+++ E A +++ M
Sbjct: 7 IYIGGLAEEVEEKILHAAFIPFGDIIDVNIPIDYETSKHRGFAFMEFELAEDAAAAIDNM 66
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L GR I+V+ + +P P++ S
Sbjct: 67 NESELYGRTIRVN-----LAKPMKNPESAS 91
>gi|242012725|ref|XP_002427078.1| peptidyl-prolyl cis-trans isomerase E, putative [Pediculus humanus
corporis]
gi|212511336|gb|EEB14340.1| peptidyl-prolyl cis-trans isomerase E, putative [Pediculus humanus
corporis]
Length = 158
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+N +Y G ++ E+ E+ + AF+PFG I I + D T+KH+GFAF+E++ E A
Sbjct: 3 TNQKRTIYAGGLAEEVDENVLNAAFIPFGDIIDIQIPLDYETEKHRGFAFIEFESAEDAA 62
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQ 124
+++ MN L GR I+V+ Q
Sbjct: 63 AAIDNMNDSELFGRTIRVNLAKPQ 86
>gi|170594273|ref|XP_001901888.1| cyclophilin-type peptidyl-prolyl cis-trans isomerase-13, Bmcyp-13
[Brugia malayi]
gi|158590832|gb|EDP29447.1| cyclophilin-type peptidyl-prolyl cis-trans isomerase-13, Bmcyp-13
[Brugia malayi]
Length = 316
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N +YVG E+ E ++ F+PFG I SI++ D T KH+GF FVEY++ E A
Sbjct: 10 NKKRTLYVGGFGEEVNEKILQAGFIPFGEIVSISIPLDYETGKHRGFGFVEYELAEDAAA 69
Query: 102 SLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+ +F
Sbjct: 70 AIDNMNDSELFGRTIRCNF 88
>gi|340720106|ref|XP_003398484.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase
E-like [Bombus terrestris]
Length = 331
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+++N+ +YVG ++ E+ E + AF+PFG I + + D ++KH+GFAF+E++ E
Sbjct: 39 MSTNTKRTIYVGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFESAED 98
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A +++ MN L GR I+V+ + +P + + S
Sbjct: 99 AAAAIDNMNDSELFGRTIRVN-----IAKPQKIKEGSS 131
>gi|348501352|ref|XP_003438234.1| PREDICTED: cold-inducible RNA-binding protein A-like [Oreochromis
niloticus]
Length = 183
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SFE ED++ AF +G I+ +++ D T + +GF FV+YD E A+ +L+
Sbjct: 6 KLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDA 65
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 66 MNGKTLDGRAIRV 78
>gi|237836525|ref|XP_002367560.1| RNA-binding protein, putative [Toxoplasma gondii ME49]
gi|211965224|gb|EEB00420.1| RNA-binding protein, putative [Toxoplasma gondii ME49]
gi|221484014|gb|EEE22318.1| hypothetical protein TGGT1_018190 [Toxoplasma gondii GT1]
gi|221505287|gb|EEE30941.1| RNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 532
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGS+ + L E I+ F FG I S++M + + KGF FVEY PEAA+++L
Sbjct: 76 RIYVGSLDYYLTELEIKSVFQAFGTIVSVDMPKE--GDRSKGFCFVEYASPEAAEMALST 133
Query: 106 MNGVMLGGRNIKVHFPHV------QVGRPS-NMPQAQSV 137
M +L GR IKV P Q+ RP+ MP SV
Sbjct: 134 MQNFVLKGRTIKVGRPTAVGTGGQQLQRPAMMMPTVGSV 172
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINM---SWDPITQKHKGFAFVEYDIPEAAQLS 102
RVY+G++ F + +++ F+ FGPI S + +P Q+H+G+ F+EY +AA+L+
Sbjct: 250 RVYIGNVPFGFSSEDLKKIFVVFGPILSCQLLPSQENP--QQHRGYGFIEYATADAAKLA 307
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRP 128
+E MNG + G+ +KV+F P
Sbjct: 308 IETMNGFEVAGKQLKVNFATAMRNSP 333
>gi|357635466|ref|ZP_09133344.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|386393370|ref|ZP_10078151.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
gi|357584020|gb|EHJ49353.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|385734248|gb|EIG54446.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
Length = 98
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++SF ED IR F FG + S+N+ D T + +GF FVE D E A+ +++
Sbjct: 4 KLYVGNLSFNSTEDDIRTQFATFGEVISVNLITDRETGRLRGFGFVEMD-EEGARAAIQG 62
Query: 106 MNGVMLGGRNIKVH 119
M+G GGRN+KV+
Sbjct: 63 MDGKDFGGRNLKVN 76
>gi|118101790|ref|XP_423739.2| PREDICTED: peptidyl-prolyl cis-trans isomerase E [Gallus gallus]
Length = 301
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|395526569|ref|XP_003765433.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E [Sarcophilus
harrisii]
Length = 301
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|225713872|gb|ACO12782.1| Peptidyl-prolyl cis-trans isomerase E [Lepeophtheirus salmonis]
Length = 311
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 52/80 (65%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+N+ +YVG ++ E++E ++ AF+PFG I + + D T+KH+GFAF+EY+ P A
Sbjct: 4 ANTKKTLYVGGLAEEVEEKVLKAAFIPFGEITEVQIPIDYQTEKHRGFAFIEYEEPRDAT 63
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ M+ L GR ++V+
Sbjct: 64 AAIDNMHDSELFGRTLRVNL 83
>gi|401406015|ref|XP_003882457.1| GA11385, related [Neospora caninum Liverpool]
gi|325116872|emb|CBZ52425.1| GA11385, related [Neospora caninum Liverpool]
Length = 564
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGS+ + L E I+ F FG I S++M + + KGF FVEY PEAA+++L
Sbjct: 78 RIYVGSLDYYLTELEIKSVFQAFGTIVSVDMPKE--GDRSKGFCFVEYASPEAAEMALST 135
Query: 106 MNGVMLGGRNIKVHFPHV------QVGRPSNM 131
M +L GR IKV P Q+ RP+ M
Sbjct: 136 MQNFVLKGRTIKVGRPTAVGTGGQQLQRPAMM 167
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINM---SWDPITQKHKGFAFVEYDIPEAAQLS 102
RVY+G++ F + +++ F+ FGPI S + +P Q+H+G+ F+EY +AA+L+
Sbjct: 273 RVYIGNVPFGFSSEDLKKIFVVFGPILSCQLLPSQENP--QQHRGYGFIEYATADAAKLA 330
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRP 128
+E MNG + G+ +KV+F P
Sbjct: 331 IETMNGFEVAGKQLKVNFATAMRNSP 356
>gi|390342940|ref|XP_001198098.2| PREDICTED: RNA-binding protein 39-like [Strongylocentrotus
purpuratus]
Length = 666
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
VNS P+R+YVGS+ + + E +R F PFG I +I + D + KG+ F+ + E
Sbjct: 300 VNS-GPMRLYVGSLHYNITEAMLRGIFEPFGKIDNIQLMMDTDANRSKGYGFITFHDAED 358
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
A+ +L+Q+NG L GR +KV+ HV R QA S +D
Sbjct: 359 AKRALDQLNGFELAGRPMKVN--HV-TERNEQGQQAPSFLD 396
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 30 KQVGPI--TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
K++ P+ PD ++ V+V +S KE +++ F G ++++ + D +++ KG
Sbjct: 191 KEISPVRDDPDADTRDARTVFVMQLSQRAKERELKEFFSSVGKVRTVKIITDRNSRRSKG 250
Query: 88 FAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
+VEYD+ ++ L+L +N L G I V H + R + Q+V + +
Sbjct: 251 VGYVEYDVADSVPLAL-GLNNQKLLGVPIIVQPSHAEKNRSA----GQNVTLQKVNSGPM 305
Query: 148 YNRIYVASIHPDLTE 162
R+YV S+H ++TE
Sbjct: 306 --RLYVGSLHYNITE 318
>gi|392578419|gb|EIW71547.1| hypothetical protein TREMEDRAFT_56482 [Tremella mesenterica DSM
1558]
Length = 223
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
S +VYVG++S+ +DT+R AF+ FG + SI M D T + +GF FV + E A++
Sbjct: 2 SGAKVYVGNLSWNTTDDTLRDAFMQFGQVLDSIVMK-DRETGRSRGFGFVTFSTAEEAEI 60
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQ 124
S++QMN L GRNI+V+ + +
Sbjct: 61 SIQQMNEQPLDGRNIRVNMANAK 83
>gi|225711114|gb|ACO11403.1| Peptidyl-prolyl cis-trans isomerase E [Caligus rogercresseyi]
Length = 313
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
NS +YVG ++ E+ E ++ AF+PFG I + + D T+KH+GFAF+EY+ P A
Sbjct: 4 GNSKKTLYVGGLAEEVDEKVLKGAFIPFGEITEVQVPIDYQTEKHRGFAFIEYEEPRDAA 63
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ M+ L GR ++V+
Sbjct: 64 AAIDNMHDSELYGRTLRVNL 83
>gi|380015375|ref|XP_003691678.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase
E-like [Apis florea]
Length = 293
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+++N+ +YVG ++ E+ E + AF+PFG I + + D ++KH+GFAF+E++ E
Sbjct: 1 MSTNTKRTIYVGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFESAED 60
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A +++ MN L GR I+V+ + +P + + S
Sbjct: 61 AAAAIDNMNDSELFGRTIRVN-----IAKPQKIKEGSS 93
>gi|291222246|ref|XP_002731128.1| PREDICTED: peptidylprolyl isomerase E-like [Saccoglossus
kowalevskii]
Length = 307
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG ++ E+ E + AF+PFG + I + D T+KH+GF+FVE++ PE A +++ M
Sbjct: 8 VYVGGLAEEVDEKVLHAAFIPFGDLVDIQIPLDYETEKHRGFSFVEFENPEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFP 121
N L GR I+V+
Sbjct: 68 NDSELFGRTIRVNLA 82
>gi|126330203|ref|XP_001365208.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Monodelphis
domestica]
Length = 301
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|226528044|dbj|BAH56564.1| TIA-1-related RNA binding protein [Spodoptera litura]
Length = 388
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P ++++ ++VG +S E++ +R AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKTDTSNHHHIFVGDLSPEIETHILRDAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQ------VGRPSNMPQAQSVIDEITEEAKLYN- 149
A+ +++ MNG LG R+I+ ++ + G PS+ Q DE+ ++ N
Sbjct: 148 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPSKPNEGAPSSKRAKQPTFDEVYNQSSPTNT 207
Query: 150 RIYVASIHPDLTEEDI 165
+Y ++ ED+
Sbjct: 208 TVYCGGFTSNVITEDL 223
>gi|159163861|pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 15 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 74
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 75 NESELFGRTIRVNL 88
>gi|301792689|ref|XP_002931311.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Ailuropoda
melanoleuca]
Length = 116
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 68/130 (52%), Gaps = 2/130 (1%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V+++ V++G +S E+ ++ AF PFG + + D T K KG+ FV Y E
Sbjct: 25 VDTSKHFHVFIGDLSPEVDNKALKDAFAPFGEVSDAKVIRDSTTLKSKGYGFVSYPKREE 84
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQ-VGRPSNMPQAQSVIDEITEEAKLYN-RIYVASI 156
A+ ++EQMNG LG R I+ ++ + G + + D++ + N +Y+ ++
Sbjct: 85 AERAIEQMNGQWLGRRTIRTNWATRKPTGTDGQQSKPELSYDDVFNQTGPDNTSVYIGNV 144
Query: 157 HPDLTEEDIK 166
+ + +ED++
Sbjct: 145 NQSVNDEDLR 154
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY+G+++ + ++ +R AF FG I + + K +GFAFV +D ++A ++ +M
Sbjct: 139 VYIGNVNQSVNDEDLRAAFDKFGRIVEVRIF------KTQGFAFVRFDKKDSACNAIVKM 192
Query: 107 NGVMLGGRNIK 117
NG +GG+ +K
Sbjct: 193 NGTEIGGQTVK 203
>gi|346467825|gb|AEO33757.1| hypothetical protein [Amblyomma maculatum]
Length = 306
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+ + S VYVG ++ E+ E + AF+PFG + + + D TQKH+GFAFVE++ E
Sbjct: 1 MTTTSKRMVYVGGLAEEVDEKVLHAAFIPFGDLVDVQIPLDYETQKHRGFAFVEFEQAED 60
Query: 99 AQLSLEQMNGVMLGGRNIKVH 119
A +++ MN L GR I+V+
Sbjct: 61 AAAAIDNMNDSELFGRTIRVN 81
>gi|402586187|gb|EJW80125.1| cyclophilin-type peptidyl-prolyl cis-trans isomerase-13, partial
[Wuchereria bancrofti]
Length = 187
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N +YVG E+ E ++ F+PFG I SI++ D T KH+GF FVEY++ E A
Sbjct: 10 NKKRTLYVGGFGEEVNEKILQAGFIPFGEIVSISIPLDYETGKHRGFGFVEYELAEDAAA 69
Query: 102 SLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+ +F
Sbjct: 70 AIDNMNDSELFGRTIRCNF 88
>gi|268534532|ref|XP_002632397.1| C. briggsae CBR-CYN-13 protein [Caenorhabditis briggsae]
Length = 332
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N +YVG S ++ E + AF+PFG + +I++ D + KH+GF FVE+D+ E A +
Sbjct: 8 NRKRTLYVGGFSEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAM 67
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+++ MN L G+ I+V+F P ++Q + E K Y R A+ D
Sbjct: 68 AIDNMNESELFGKTIRVNFARP----PKATERSQKPVWADDEWLKKYGRGGEAAPGDDAD 123
Query: 162 EE 163
E
Sbjct: 124 GE 125
>gi|146328793|ref|YP_001209360.1| RNA recognition motif-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232263|gb|ABQ13241.1| RNA recognition motif protein [Dichelobacter nodosus VCS1703A]
Length = 95
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++S+ ED +R AF FG +++ ++ D + + KGF FVE EAA+ ++E +
Sbjct: 4 IYVGNLSYRTTEDELRNAFSQFGDVQNASIIKDRDSGRSKGFGFVEMPDAEAAKKAIESL 63
Query: 107 NGVMLGGRNIKVHFPHVQVGRP 128
N LGGRN+K++ + RP
Sbjct: 64 NDKDLGGRNLKINEARPREMRP 85
>gi|392902210|ref|NP_001255925.1| Protein CYN-13, isoform a [Caenorhabditis elegans]
gi|5832813|emb|CAB55151.1| Protein CYN-13, isoform a [Caenorhabditis elegans]
Length = 331
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N +YVG + ++ E + AF+PFG + +I++ D + KH+GF FVE+D+ E A +
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAM 67
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+++ MN L G+ I+V+F P ++Q + E K Y R A+ D
Sbjct: 68 AIDNMNESELFGKTIRVNFARP----PKATERSQKPVWADDEWLKKYGRGGEAAAEEDGD 123
Query: 162 EE 163
E
Sbjct: 124 AE 125
>gi|340371235|ref|XP_003384151.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Amphimedon
queenslandica]
Length = 306
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG +S E+ E + AF+PFG I I++ D +QKH+GFAFVE++ E A +++ M
Sbjct: 12 LYVGGLSEEVNEKILHSAFIPFGDIVDISIPLDYSSQKHRGFAFVEFEATEDAAAAIDNM 71
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
+ + GR I+V+ + RP + + S
Sbjct: 72 DNSEIFGRTIRVN-----IARPKMLKEGSS 96
>gi|402587661|gb|EJW81596.1| nucleolysin TIAR [Wuchereria bancrofti]
Length = 440
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V+++ V+VG +S E+ ++ AF PFG + + D T K KG+ FV Y E
Sbjct: 175 VDTSKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREE 234
Query: 99 AQLSLEQMNGVMLGGRNIKVHF----PHVQVGRPSNMPQAQSVIDEITEEAKLYN-RIYV 153
A+ ++EQMNG LG R I+ ++ P +++ D++ + N +YV
Sbjct: 235 AERAIEQMNGQWLGRRTIRTNWATRKPTGTGAGDGQYGRSELNYDDVYNQTGPDNTSVYV 294
Query: 154 ASIHPDLTEEDIK 166
+++ + +ED++
Sbjct: 295 GNVNSNANDEDLR 307
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+++ ++ +R AF FG I + + K +G+AFV +D ++A ++ +M
Sbjct: 292 VYVGNVNSNANDEDLRAAFDKFGRILEVRIF------KSQGYAFVRFDKKDSACNAICKM 345
Query: 107 NGVMLGGRNIKVHF-----PHVQVGRPSNMPQ 133
NG L G+NIK + H Q N Q
Sbjct: 346 NGQELCGQNIKCSWGRTPEGHNQQANAYNQAQ 377
>gi|345319884|ref|XP_001515609.2| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 1
[Ornithorhynchus anatinus]
Length = 300
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAF+E+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|209881578|ref|XP_002142227.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209557833|gb|EEA07878.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 533
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 9/85 (10%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGS+ + L E +RQ F FG I +I+M + + KGF F+EY E+A+++L
Sbjct: 157 RIYVGSLDYSLSEADLRQVFGSFGTIVNIDMPRE--GNRSKGFCFIEYTTQESAEMALAT 214
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MN +L GR IK VGRP+N
Sbjct: 215 MNRFVLKGRPIK-------VGRPTN 232
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK---HKGFAFVEYDIPEAAQLS 102
R+Y+GS+ + D +R F FG I S + P +K H+G+ F+E+ P+ A+L+
Sbjct: 279 RIYIGSVPYSFTPDDLRHIFKAFGVILSCQLI--PSVEKPGTHRGYGFIEFGTPDQAKLA 336
Query: 103 LEQMNGVMLGGRNIKVH 119
+E MNG +GG+ +KV+
Sbjct: 337 IETMNGFEVGGKQLKVN 353
>gi|189242406|ref|XP_001810193.1| PREDICTED: similar to putative peptidyl-prolyl cis-trans isomerase
E [Tribolium castaneum]
gi|270016278|gb|EFA12724.1| hypothetical protein TcasGA2_TC002359 [Tribolium castaneum]
Length = 302
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+++ S +YVG ++ E+ + + AF+PFG I I + D T+KH+GFAF+E++ E
Sbjct: 1 MSTGSKRTIYVGGLAEEVDDKVLNAAFIPFGDIVDIQIPLDYETEKHRGFAFIEFESAED 60
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQ 124
A +++ MN L GR I+V+ Q
Sbjct: 61 AAAAIDNMNDSELFGRTIRVNLAKPQ 86
>gi|66362264|ref|XP_628096.1| Ro ribonucleoprotein-binding protein 1, RNA binding protein with 3x
RRM domains [Cryptosporidium parvum Iowa II]
gi|46227417|gb|EAK88352.1| Ro ribonucleoprotein-binding protein 1, RNA binding protein with 3x
RRM domains [Cryptosporidium parvum Iowa II]
gi|323508937|dbj|BAJ77361.1| cgd1_2730 [Cryptosporidium parvum]
gi|323510323|dbj|BAJ78055.1| cgd1_2730 [Cryptosporidium parvum]
Length = 693
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 9/85 (10%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGS+ + L E ++Q F FGPI +I+M + + KGF F+EY E+A+++L
Sbjct: 291 RIYVGSLDYSLNEADLKQVFGSFGPIVNIDMPRE--GNRSKGFCFIEYTSQESAEMALAT 348
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MN +L GR I+ VGRP+N
Sbjct: 349 MNRFVLKGRPIR-------VGRPTN 366
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK---HKGFAFVEYDIPEAAQLS 102
R+Y+GS+ + D +R F FG I S + P +K H+G+ F+E+ + A+L+
Sbjct: 425 RIYIGSVPYSFTTDDLRHIFKTFGVILSCQLI--PSIEKPGTHRGYGFIEFGTADQAKLA 482
Query: 103 LEQMNGVMLGGRNIKVH 119
+E MNG +GG+ +KV+
Sbjct: 483 IETMNGFEVGGKQLKVN 499
>gi|67624203|ref|XP_668384.1| RNA-binding protein SiahBP [Cryptosporidium hominis TU502]
gi|54659576|gb|EAL38146.1| RNA-binding protein SiahBP [Cryptosporidium hominis]
Length = 615
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 9/85 (10%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGS+ + L E ++Q F FGPI +I+M + + KGF F+EY E+A+++L
Sbjct: 213 RIYVGSLDYSLNEADLKQVFGSFGPIVNIDMPRE--GNRSKGFCFIEYTSQESAEMALAT 270
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MN +L GR I+ VGRP+N
Sbjct: 271 MNRFVLKGRPIR-------VGRPTN 288
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK---HKGFAFVEYDIPEAAQLS 102
R+Y+GS+ + D +R F FG I S + P +K H+G+ F+E+ + A+L+
Sbjct: 347 RIYIGSVPYSFTTDDLRHIFKTFGVILSCQLI--PSIEKPGTHRGYGFIEFGTADQAKLA 404
Query: 103 LEQMNGVMLGGRNIKVH 119
+E MNG +GG+ +KV+
Sbjct: 405 IETMNGFEVGGKQLKVN 421
>gi|345497985|ref|XP_001603213.2| PREDICTED: nucleolysin TIA-1 isoform p40-like [Nasonia vitripennis]
Length = 386
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
VN + ++VG +S E++ T+R+AF PFG I + DP T K KG+ FV +
Sbjct: 53 SVNKSEHYHIFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTMKSKGYGFVSFVKKA 112
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV-IDEITEEAKLYN-RIYVAS 155
A+ ++ MNG LG R+I+ ++ + P + + + DE+ ++ N +Y
Sbjct: 113 EAESAIGAMNGQWLGSRSIRTNWATRKPPAPKSEANTKPLTFDEVYNQSSPTNCTVYCGG 172
Query: 156 IHPDLTEE 163
+ LTEE
Sbjct: 173 LTNGLTEE 180
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 34 PITPD--VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
P+T D N +SP VY G ++ L E+ +++ F PFG I+ I + K KG+A
Sbjct: 151 PLTFDEVYNQSSPTNCTVYCGGLTNGLTEELMQKTFSPFGSIQEIRVF------KDKGYA 204
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEIT 142
F+ + E+A ++ ++ + G+ +K + + G P+N Q + T
Sbjct: 205 FIRFSTKESATHAIVAVHNTDINGQTVKCSWGK-ESGDPNNAQQTGQALSSAT 256
>gi|351697087|gb|EHB00006.1| Putative RNA-binding protein 23 [Heterocephalus glaber]
Length = 436
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P R+YVG + F + ED +R F PFG I++I + D T KG+ F+ + E A
Sbjct: 258 GSGGPKRLYVGCLHFNITEDMLRGIFEPFGKIENIVLMKDSETGHSKGYGFITFSESECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ ++EQ+NG L GR ++V
Sbjct: 318 RRAVEQLNGFELAGRPMRV 336
>gi|327285414|ref|XP_003227428.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Anolis
carolinensis]
Length = 301
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAF+E+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDERVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|432915990|ref|XP_004079241.1| PREDICTED: cold-inducible RNA-binding protein-like [Oryzias
latipes]
Length = 174
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SFE ED++ AF +G I+ +++ D T + +GF FV+YD E A+ +L+
Sbjct: 6 KLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAKDALDA 65
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 66 MNGKTLDGRAIRV 78
>gi|225716982|gb|ACO14337.1| Peptidyl-prolyl cis-trans isomerase E [Esox lucius]
Length = 302
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAF+E+++ E A +++ M
Sbjct: 8 LYVGGLTEEVDEKVLHAAFIPFGDITDIQIPIDYETEKHRGFAFIEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L GR I+V+ + +P + + S
Sbjct: 68 NESELFGRTIRVN-----IAKPMRIKEGSS 92
>gi|308482576|ref|XP_003103491.1| CRE-CYN-13 protein [Caenorhabditis remanei]
gi|308259912|gb|EFP03865.1| CRE-CYN-13 protein [Caenorhabditis remanei]
Length = 337
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N +YVG + E+ E + AF+PFG + +I++ D + KH+GF FVE+D+ E A +
Sbjct: 8 NRKRTLYVGGFTEEVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAM 67
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNR 150
+++ MN L G+ I+V+F P ++Q + E K Y R
Sbjct: 68 AIDNMNESELFGKTIRVNFARP----PKATERSQKPVWADDEWLKKYGR 112
>gi|229366886|gb|ACQ58423.1| Peptidyl-prolyl cis-trans isomerase E [Anoplopoma fimbria]
Length = 302
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAF+E+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELGEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVH 119
N L GR I+V+
Sbjct: 68 NESELFGRTIRVN 80
>gi|327289313|ref|XP_003229369.1| PREDICTED: probable RNA-binding protein 23-like [Anolis
carolinensis]
Length = 445
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ + ++ +R F PFG I SI + D T + KG+ F+ + E A
Sbjct: 261 GSGGPMRLYVGSLHCNITKEMLRGIFEPFGKIDSIVLMRDQDTGQSKGYGFITFSEAECA 320
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 321 RRALEQLNGFELAGRPMRV 339
>gi|229367642|gb|ACQ58801.1| Cold-inducible RNA-binding protein [Anoplopoma fimbria]
Length = 179
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 49/73 (67%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SFE E+++ AF +G I+ +++ D T+K +GF FV+YD E A+ +++
Sbjct: 6 KLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDRETEKSRGFGFVKYDNAEDAKDAMDG 65
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 66 MNGQTLDGRTIRV 78
>gi|195037090|ref|XP_001989998.1| GH19101 [Drosophila grimshawi]
gi|193894194|gb|EDV93060.1| GH19101 [Drosophila grimshawi]
Length = 476
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
TP + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 86 TPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVK 145
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 146 KAEAENAIQAMNGQWIGSRSIRTNW 170
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + E+ + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDGTVSEELLVALFGKMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ASTALTAMNKRVFLDKEIKVNW----ATSPGNTPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 56 LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRN 115
+ ++ + + F+ FGPI+ + + K KGFAF+++ EAA ++E + + G +
Sbjct: 236 ISDELMHKHFMQFGPIQDVRVF------KDKGFAFIKFVAKEAAARAIEHTHNTEVHGNH 289
Query: 116 IK 117
+K
Sbjct: 290 VK 291
>gi|403346976|gb|EJY72898.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 310
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++V + +E +ED I F FG IKSI +S++ T++ KGFA++ + ++A+ +L +M
Sbjct: 185 LFVKGLPYEFREDDIGDRFRKFGEIKSIRLSYNWQTKQFKGFAYLTFGNHQSAKKALLEM 244
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNR 150
NG + GR IKV + VQ P+ ++ E+ KLYN+
Sbjct: 245 NGKEVKGRQIKVDYDVVQ------EPKQGYKVNLNNEKNKLYNK 282
>gi|375144998|ref|YP_005007439.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361059044|gb|AEV98035.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 82
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 50/75 (66%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YV ++SF ++ D +R+ F +G + S+N+ D +T + +GFAF+E +AA+ ++
Sbjct: 1 MNIYVSNLSFSVQNDDLRKHFSEYGEVDSVNVIIDKVTNRSRGFAFIEMKDNQAAEKAIR 60
Query: 105 QMNGVMLGGRNIKVH 119
++NG+ + R IKV+
Sbjct: 61 ELNGLTIDNRAIKVN 75
>gi|114145536|ref|NP_001041333.1| peptidyl-prolyl cis-trans isomerase E [Rattus norvegicus]
gi|33086482|gb|AAP92553.1| Ab1-210 [Rattus norvegicus]
Length = 255
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|328792887|ref|XP_624017.2| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1 [Apis
mellifera]
Length = 367
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N + ++VG +S E++ T+R+AF PFG I + DP T K KG+ FV + A
Sbjct: 50 NKSEHYHIFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFVKKAEA 109
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV-IDEITEEAKLYN-RIYVASIH 157
+ ++ MNG LG R+I+ ++ + P + A+ + DE+ ++ N +Y +
Sbjct: 110 ESAIGAMNGQWLGSRSIRTNWATRKPPAPKSEANAKPLTFDEVYNQSSPTNCTVYCGGLT 169
Query: 158 PDLTEE 163
LTEE
Sbjct: 170 NGLTEE 175
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 34 PITPD--VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
P+T D N +SP VY G ++ L E+ +++ F PFG I+ I + K KG+A
Sbjct: 146 PLTFDEVYNQSSPTNCTVYCGGLTNGLTEELMQKTFSPFGSIQEIRVF------KDKGYA 199
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEIT 142
F+ + E+A ++ ++ + G+ +K + + G P+N Q + T
Sbjct: 200 FIRFSTKESATHAIVAVHNTDINGQTVKCSWGK-ESGDPNNAQQTGQALSSAT 251
>gi|167521049|ref|XP_001744863.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776477|gb|EDQ90096.1| predicted protein [Monosiga brevicollis MX1]
Length = 307
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E+ +R AF+PFG I + + D TQ HKGFAF+EY E A+ +++ M
Sbjct: 10 LYVGGLAEEVTEEVLRDAFVPFGDILELQLPLDFQTQDHKGFAFIEYATLEDAEAAIDNM 69
Query: 107 NGVMLGGRNIKVHFPHV 123
+ L GR ++V+ +V
Sbjct: 70 HESELYGRTLRVNVANV 86
>gi|158259649|dbj|BAF85783.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH 122
N L GR I+V+ +
Sbjct: 68 NESELFGRTIRVNLAN 83
>gi|431922548|gb|ELK19491.1| Peptidyl-prolyl cis-trans isomerase E [Pteropus alecto]
Length = 301
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|303245896|ref|ZP_07332178.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
gi|302492679|gb|EFL52547.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
Length = 94
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++SF ED IR F FG + S+N+ D T + +GF FVE D E A+ ++
Sbjct: 4 KLYVGNLSFNSSEDDIRTQFSNFGEVISVNLITDRETGRLRGFGFVEMD-DEGARAAIAG 62
Query: 106 MNGVMLGGRNIKVH 119
M+G GGRN+KV+
Sbjct: 63 MDGQEFGGRNLKVN 76
>gi|296488946|tpg|DAA31059.1| TPA: peptidylprolyl isomerase E [Bos taurus]
Length = 301
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|195400098|ref|XP_002058655.1| GJ14540 [Drosophila virilis]
gi|194142215|gb|EDW58623.1| GJ14540 [Drosophila virilis]
Length = 472
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
TP + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 86 TPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVK 145
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 146 KAEAENAIQAMNGQWIGSRSIRTNW 170
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDGSVSEDLLIALFGKMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ASTALTAMNKRVFLDKEIKVNW----ATSPGNTPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
>gi|162450147|ref|YP_001612514.1| RNA-binding protein [Sorangium cellulosum So ce56]
gi|161160729|emb|CAN92034.1| RNA-binding protein [Sorangium cellulosum So ce56]
Length = 95
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++SF +T+ AF G ++ I M D T + +GFAFV +AA ++ Q
Sbjct: 4 RLYVGNLSFNTTRETLESAFAAAGEVREIAMPTDRETGQPRGFAFVTMGTAQAANSAISQ 63
Query: 106 MNGVMLGGRNIKVH 119
+NG ML GR +KV+
Sbjct: 64 LNGAMLDGRTLKVN 77
>gi|194334049|ref|YP_002015909.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
gi|194311867|gb|ACF46262.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
Length = 90
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +Y+G++ + + E+ +R+AF FG + S N+ D T + KGF FVE + A ++E
Sbjct: 1 MNIYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIE 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPSNMPQ 133
+N L GR IKV+ + RP+ Q
Sbjct: 61 SLNDTDLNGRTIKVNEAKPRAERPARRYQ 89
>gi|197098002|ref|NP_001126436.1| peptidyl-prolyl cis-trans isomerase E [Pongo abelii]
gi|75041350|sp|Q5R723.1|PPIE_PONAB RecName: Full=Peptidyl-prolyl cis-trans isomerase E; Short=PPIase
E; AltName: Full=Cyclophilin E; AltName: Full=Rotamase E
gi|55731450|emb|CAH92437.1| hypothetical protein [Pongo abelii]
Length = 301
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|291399196|ref|XP_002715239.1| PREDICTED: peptidylprolyl isomerase E [Oryctolagus cuniculus]
Length = 296
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|148238144|ref|NP_001091630.1| peptidyl-prolyl cis-trans isomerase E [Bos taurus]
gi|251823903|ref|NP_001156520.1| peptidyl-prolyl cis-trans isomerase E [Ovis aries]
gi|182676483|sp|A4FV72.1|PPIE_BOVIN RecName: Full=Peptidyl-prolyl cis-trans isomerase E; Short=PPIase
E; AltName: Full=Cyclophilin E; AltName: Full=Rotamase E
gi|133777612|gb|AAI23819.1| PPIE protein [Bos taurus]
gi|238799776|gb|ACR55760.1| peptidylprolyl isomerase E [Ovis aries]
Length = 301
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|444706912|gb|ELW48229.1| Peptidyl-prolyl cis-trans isomerase E [Tupaia chinensis]
Length = 301
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|432095454|gb|ELK26650.1| Peptidyl-prolyl cis-trans isomerase E [Myotis davidii]
Length = 301
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|149693768|ref|XP_001503477.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 1
[Equus caballus]
Length = 301
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|149693770|ref|XP_001503484.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 2
[Equus caballus]
Length = 296
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|109002460|ref|XP_001113613.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 3 [Macaca
mulatta]
gi|332248422|ref|XP_003273362.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 1
[Nomascus leucogenys]
gi|402854044|ref|XP_003891690.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E [Papio anubis]
Length = 301
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|440898130|gb|ELR49690.1| Peptidyl-prolyl cis-trans isomerase E, partial [Bos grunniens
mutus]
Length = 280
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|2828149|gb|AAC00006.1| cyclophilin-33A [Homo sapiens]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|5174637|ref|NP_006103.1| peptidyl-prolyl cis-trans isomerase E isoform 1 [Homo sapiens]
gi|332808526|ref|XP_001171465.2| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 8 [Pan
troglodytes]
gi|397488858|ref|XP_003815459.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Pan
paniscus]
gi|426329070|ref|XP_004025567.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 1 [Gorilla
gorilla gorilla]
gi|13124097|sp|Q9UNP9.1|PPIE_HUMAN RecName: Full=Peptidyl-prolyl cis-trans isomerase E; Short=PPIase
E; AltName: Full=Cyclophilin E; AltName:
Full=Cyclophilin-33; AltName: Full=Rotamase E
gi|4406227|gb|AAD19906.1| peptidyl-prolyl cis-trans isomerase E [Homo sapiens]
gi|13436167|gb|AAH04898.1| Peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
gi|14250089|gb|AAH08451.1| Peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
gi|78395107|gb|AAI07737.1| Peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
gi|119627660|gb|EAX07255.1| peptidylprolyl isomerase E (cyclophilin E), isoform CRA_a [Homo
sapiens]
gi|189053911|dbj|BAG36418.1| unnamed protein product [Homo sapiens]
gi|312150756|gb|ADQ31890.1| peptidylprolyl isomerase E (cyclophilin E) [synthetic construct]
gi|410226048|gb|JAA10243.1| peptidylprolyl isomerase E (cyclophilin E) [Pan troglodytes]
gi|410268072|gb|JAA22002.1| peptidylprolyl isomerase E (cyclophilin E) [Pan troglodytes]
gi|410307918|gb|JAA32559.1| peptidylprolyl isomerase E (cyclophilin E) [Pan troglodytes]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|149693777|ref|XP_001503512.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 1
[Equus caballus]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|395853060|ref|XP_003799038.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E [Otolemur
garnettii]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|348553004|ref|XP_003462317.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Cavia
porcellus]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|344287649|ref|XP_003415565.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Loxodonta
africana]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|354485865|ref|XP_003505102.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Cricetulus
griseus]
gi|344236478|gb|EGV92581.1| Peptidyl-prolyl cis-trans isomerase E [Cricetulus griseus]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|320163233|gb|EFW40132.1| RNA binding domain-containing protein 39 [Capsaspora owczarzaki
ATCC 30864]
Length = 600
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGS+ F L E ++ F P G + S+ ++ D K KG+AFV++ AA+L++E
Sbjct: 356 RVYVGSLDFALTEADVKSLFSPCGEVISVTLNRD--NGKSKGYAFVQFADAGAAKLAME- 412
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQA 134
+NGV + GR +KV+F GR N P A
Sbjct: 413 LNGVEVAGRPLKVNFATDPEGRFLNAPNA 441
>gi|313244810|emb|CBY15509.1| unnamed protein product [Oikopleura dioica]
Length = 360
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 40/53 (75%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
++G + + + +R+AF PFG +K++N+ DP+T +HKG+A+VEYD+PE +Q
Sbjct: 41 FIGGLDYNVGMREVREAFAPFGILKAVNLDIDPLTGRHKGYAYVEYDLPEGSQ 93
>gi|241149709|ref|XP_002406178.1| cyclophilin type peptidyl-prolyl cis-trans isomerase, putative
[Ixodes scapularis]
gi|215493819|gb|EEC03460.1| cyclophilin type peptidyl-prolyl cis-trans isomerase, putative
[Ixodes scapularis]
Length = 292
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+S VYVG ++ E+ E + AF+PFG + + + D T+KH+GFAFVE++ E A
Sbjct: 3 SSSKRIVYVGGLAEEVDEKVLHAAFIPFGDVVDVQIPLDYETEKHRGFAFVEFEQAEDAV 62
Query: 101 LSLEQMNGVMLGGRNIKVH 119
+++ MN L GR I+V+
Sbjct: 63 AAIDNMNDSELFGRTIRVN 81
>gi|170592088|ref|XP_001900801.1| RNA recognition motif. [Brugia malayi]
gi|158591668|gb|EDP30272.1| RNA recognition motif [Brugia malayi]
Length = 421
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V+++ V+VG +S E+ ++ AF PFG + + D T K KG+ FV Y E
Sbjct: 156 VDTSKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREE 215
Query: 99 AQLSLEQMNGVMLGGRNIKVHF----PHVQVGRPSNMPQAQSVIDEITEEAKLYN-RIYV 153
A+ ++EQMNG LG R I+ ++ P +++ D++ + N +YV
Sbjct: 216 AERAIEQMNGQWLGRRTIRTNWATRKPTGTGAGDGQYGRSELNYDDVYNQTGPDNTSVYV 275
Query: 154 ASIHPDLTEEDIK 166
+++ +ED++
Sbjct: 276 GNVNSSANDEDLR 288
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+++ ++ +R AF FG I + + K +G+AFV +D ++A ++ +M
Sbjct: 273 VYVGNVNSSANDEDLRAAFDKFGRILEVRIF------KSQGYAFVRFDKKDSACNAICKM 326
Query: 107 NGVMLGGRNIKVHF---PHVQVGRPSNMPQAQ 135
NG L G+NIK + P + S QAQ
Sbjct: 327 NGQELCGQNIKCSWGRTPEGHSQQASAYNQAQ 358
>gi|403292044|ref|XP_003937068.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 1 [Saimiri
boliviensis boliviensis]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|296207581|ref|XP_002750690.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 1
[Callithrix jacchus]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|213512892|ref|NP_001134807.1| peptidyl-prolyl cis-trans isomerase E [Salmo salar]
gi|209736222|gb|ACI68980.1| Peptidyl-prolyl cis-trans isomerase E [Salmo salar]
Length = 302
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG + I + D T+KH+GFAF+E+++ E A +++ M
Sbjct: 8 LYVGGLTEEVDEKVLHAAFIPFGDVTDIQIPIDYETEKHRGFAFIEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L GR I+V+ + +P + + S
Sbjct: 68 NESELFGRTIRVN-----IAKPMRIKEGSS 92
>gi|73976759|ref|XP_848739.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 2 [Canis
lupus familiaris]
gi|410966850|ref|XP_003989940.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 1 [Felis
catus]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|311258960|ref|XP_003127865.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 1
[Sus scrofa]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|149023873|gb|EDL80370.1| peptidylprolyl isomerase E (cyclophilin E) [Rattus norvegicus]
gi|165970632|gb|AAI58561.1| Ppie protein [Rattus norvegicus]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|354545437|emb|CCE42165.1| hypothetical protein CPAR2_807140 [Candida parapsilosis]
Length = 420
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++VG +S E+ ++ +++AF F K ++ WD T + +G+ FV + E A+L+L+ M
Sbjct: 148 LFVGDLSSEVNDEALKKAFNKFDSFKEAHVMWDMQTSRSRGYGFVTFSKQEDAELALQTM 207
Query: 107 NGVMLGGRNIKVHF-PHVQV 125
NG LGGR I+ ++ H QV
Sbjct: 208 NGAWLGGRAIRCNWAAHKQV 227
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHK---GFAFVEYDIPEAAQLSL 103
+YVG++ E+ I + F PIKSI + + K+K +AF+E+D + A ++L
Sbjct: 56 LYVGNLPKSASEEQISELFSVSKPIKSIKL----LNDKNKLGFNYAFIEFDDNQEADMAL 111
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
+NG +L I+V++ + Q+ ++ T E YN ++V + ++ +E
Sbjct: 112 STLNGKLLNNCEIRVNWAY----------QSATIASSSTPEDPTYN-LFVGDLSSEVNDE 160
Query: 164 DIK 166
+K
Sbjct: 161 ALK 163
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY+G+I+ ++ + FG I ++ + P KG AFV+YD E A L++ Q+
Sbjct: 334 VYLGNIAHATQQQEMLPLLQNFGFI--VDFKFHP----EKGCAFVKYDSHERAALAIIQL 387
Query: 107 NGVMLGGRNIKVHF-----PHVQVGRPSNMPQAQ 135
G L GR +K + P Q R SN Q +
Sbjct: 388 AGFNLNGRPLKCGWGKERPPQFQ-NRTSNYGQGR 420
>gi|237832541|ref|XP_002365568.1| peptidyl-prolyl cis-trans isomerase E, putative [Toxoplasma gondii
ME49]
gi|211963232|gb|EEA98427.1| peptidyl-prolyl cis-trans isomerase E, putative [Toxoplasma gondii
ME49]
gi|221488019|gb|EEE26233.1| dc50, putative [Toxoplasma gondii GT1]
gi|221508540|gb|EEE34109.1| fuse-binding protein-interacting repressor siahbp1, putative
[Toxoplasma gondii VEG]
Length = 145
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 49/76 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ +++E+ +R AFLPFG IK + + D T H+GF FVE++ + A+ ++E M
Sbjct: 23 LYVGGLAEQVEEEVLRAAFLPFGDIKQLEIPKDKTTGLHRGFGFVEFEEEDDAKEAMENM 82
Query: 107 NGVMLGGRNIKVHFPH 122
+ L GR ++V+
Sbjct: 83 DNAELYGRTLRVNLSR 98
>gi|45439316|ref|NP_982281.1| peptidyl-prolyl cis-trans isomerase E isoform 2 [Homo sapiens]
gi|2828151|gb|AAC00007.1| cyclophilin-33B [Homo sapiens]
gi|4406229|gb|AAD19907.1| peptidyl-prolyl cis-trans isomerase E [Homo sapiens]
Length = 296
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|355713007|gb|AES04539.1| peptidylprolyl isomerase E [Mustela putorius furo]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|332248424|ref|XP_003273363.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 2
[Nomascus leucogenys]
Length = 314
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|14196340|ref|NP_062362.1| peptidyl-prolyl cis-trans isomerase E [Mus musculus]
gi|37154834|sp|Q9QZH3.2|PPIE_MOUSE RecName: Full=Peptidyl-prolyl cis-trans isomerase E; Short=PPIase
E; AltName: Full=Cyclophilin E; AltName:
Full=Cyclophilin-33; AltName: Full=Rotamase E
gi|12842203|dbj|BAB25512.1| unnamed protein product [Mus musculus]
gi|28278787|gb|AAH45154.1| Peptidylprolyl isomerase E (cyclophilin E) [Mus musculus]
gi|148698442|gb|EDL30389.1| peptidylprolyl isomerase E (cyclophilin E) [Mus musculus]
Length = 301
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|386394474|ref|ZP_10079255.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
gi|385735352|gb|EIG55550.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
Length = 108
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++SF ED +R F P+G + S+N+ D T + +GF FVE D E A +++
Sbjct: 4 KLYVGNLSFSSSEDDVRDHFAPYGEVISVNLITDRETGRLRGFGFVEMD-DEGANAAIQA 62
Query: 106 MNGVMLGGRNIKVH 119
++G LGGR +KV+
Sbjct: 63 LDGKELGGRTLKVN 76
>gi|357634909|ref|ZP_09132787.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|357583463|gb|EHJ48796.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
Length = 107
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++SF ED +R F P+G + S+N+ D T + +GF FVE D E A +++
Sbjct: 4 KLYVGNLSFSSSEDDVRDHFAPYGEVISVNLITDRETGRLRGFGFVEMD-DEGANAAIQA 62
Query: 106 MNGVMLGGRNIKVH 119
++G LGGR +KV+
Sbjct: 63 LDGKELGGRTLKVN 76
>gi|225156280|ref|ZP_03724758.1| RNP-1 like RNA-binding protein [Diplosphaera colitermitum TAV2]
gi|224803012|gb|EEG21257.1| RNP-1 like RNA-binding protein [Diplosphaera colitermitum TAV2]
Length = 106
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++SF E +R AF G + + ++ D T + +GFAFV +D E +QL+ E+
Sbjct: 4 KLYVGNLSFNTSEADLRTAFSTCGTLTDVFLATDRETGRPRGFAFVTFDTAEESQLATEK 63
Query: 106 MNGVMLGGRNIKVH 119
+NG LGGR I V+
Sbjct: 64 LNGTDLGGRAITVN 77
>gi|410966852|ref|XP_003989941.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 2 [Felis
catus]
Length = 296
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|303305009|ref|NP_001181936.1| peptidyl-prolyl cis-trans isomerase E isoform 4 [Homo sapiens]
gi|208967014|dbj|BAG73521.1| peptidylprolyl isomerase E [synthetic construct]
Length = 314
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|73917051|gb|AAZ93379.1| cyclophilin-33B [Homo sapiens]
Length = 314
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|121543726|gb|ABM55548.1| putative peptidyl-prolyl cis-trans isomerase E [Maconellicoccus
hirsutus]
Length = 291
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ EL E + FL FG I I + D T+KH+GFAF+E++ PE A +++ M
Sbjct: 9 IYVGGLADELDEKILNNVFLTFGDILDIQIPLDYETEKHRGFAFIEFEAPEDAAAAIDNM 68
Query: 107 NGVMLGGRNIKVHFPHVQ 124
N L GR ++V+ Q
Sbjct: 69 NESELFGRTMRVNLAKPQ 86
>gi|332248426|ref|XP_003273364.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E isoform 3
[Nomascus leucogenys]
Length = 296
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|119627661|gb|EAX07256.1| peptidylprolyl isomerase E (cyclophilin E), isoform CRA_b [Homo
sapiens]
gi|410226050|gb|JAA10244.1| peptidylprolyl isomerase E (cyclophilin E) [Pan troglodytes]
gi|410268070|gb|JAA22001.1| peptidylprolyl isomerase E (cyclophilin E) [Pan troglodytes]
gi|410307920|gb|JAA32560.1| peptidylprolyl isomerase E (cyclophilin E) [Pan troglodytes]
Length = 296
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|387017750|gb|AFJ50993.1| Peptidyl-prolyl cis-trans isomerase E-like [Crotalus adamanteus]
Length = 301
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
++S +YVG ++ E+ E + AF+PFG + I + D T+KH+GFAF+E+++ E A
Sbjct: 2 ASSKRVLYVGGLAEEVDERVLHAAFIPFGDLTDIQIPLDYETEKHRGFAFIEFELAEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 AAIDNMNESELFGRTIRVNL 81
>gi|351713681|gb|EHB16600.1| Peptidyl-prolyl cis-trans isomerase E [Heterocephalus glaber]
Length = 301
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|115497272|ref|NP_001069104.1| probable RNA-binding protein 23 [Bos taurus]
gi|113911797|gb|AAI22594.1| RNA binding motif protein 23 [Bos taurus]
Length = 463
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ + ED +R PFG I +I + D T + KG+ F+ + E A
Sbjct: 273 GSGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECA 332
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +++
Sbjct: 333 RRALEQLNGFELAGRPMRI 351
>gi|296483628|tpg|DAA25743.1| TPA: RNA binding motif protein 23 [Bos taurus]
Length = 463
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ + ED +R PFG I +I + D T + KG+ F+ + E A
Sbjct: 273 GSGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECA 332
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +++
Sbjct: 333 RRALEQLNGFELAGRPMRI 351
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P R+YVG++ + + AF G + + + +D IT + +GFAFV E A ++
Sbjct: 107 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAV 166
Query: 104 EQMNGVMLGGRNIKVHFPHVQVG 126
+ NG +LGGR ++V+FP V G
Sbjct: 167 QMFNGALLGGRTVRVNFPEVPRG 189
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+VY G++ + ++ D ++ AF + + ++ T + +GF FV + + A+ +L+
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 106 MNGVMLGGRNIKV 118
M+GV L GR +++
Sbjct: 273 MDGVELDGRPLRL 285
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P R+YVG++ + + AF G + + + +D IT + +GFAFV E A ++
Sbjct: 107 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAV 166
Query: 104 EQMNGVMLGGRNIKVHFPHVQVG 126
+ NG +LGGR ++V+FP V G
Sbjct: 167 QMFNGALLGGRTVRVNFPEVPRG 189
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+VY G++ + ++ D ++ AF + + ++ T + +GF FV + + A+ +L+
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 106 MNGVMLGGRNIKV 118
M+GV L GR +++
Sbjct: 273 MDGVELDGRPLRL 285
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E+++ +AF +G I +++ D T + +GF FV+YD E A+ +LE
Sbjct: 6 KLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALEG 65
Query: 106 MNGVMLGGRNIKV 118
MNG + GR I+V
Sbjct: 66 MNGKSVDGRTIRV 78
>gi|384491350|gb|EIE82546.1| hypothetical protein RO3G_07251 [Rhizopus delemar RA 99-880]
Length = 348
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 14/143 (9%)
Query: 37 PDVNSNSPLR-----------VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
P N N PL+ V+VG ++ E+ ++ + QAF FG + ++ WDP++ K
Sbjct: 98 PSANINPPLQMTKEDTTNHFHVFVGDLAAEINDEKLAQAFSEFGTMSEAHVMWDPLSGKS 157
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP--HVQVGRPSNMPQAQSVIDEITE 143
+GF FV + A+ ++ MNG LG R I+ ++ Q P+ P Q + + +
Sbjct: 158 RGFGFVAFRDKTDAERAIATMNGEWLGTRPIRCNWATQKGQTAMPAPQPGQQLPYEVVVQ 217
Query: 144 EAKLY-NRIYVASIHPDLTEEDI 165
+ Y IYV +I ++++ D+
Sbjct: 218 QTPAYVTSIYVGNIPLNVSQNDL 240
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG+I + ++ + Q F FG ++ + Q +GFAFV+ D E A ++ +
Sbjct: 226 IYVGNIPLNVSQNDLVQPFQRFGYVQEVKF------QADRGFAFVKMDTHENAANAIVHL 279
Query: 107 NGVMLGGRNIKVHF 120
+ + G K+ +
Sbjct: 280 QNMSINGNVTKLSW 293
>gi|215820612|ref|NP_001135965.1| RNA binding motif protein 39 [Acyrthosiphon pisum]
Length = 501
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P+++YVGS+ + + E+ +R F PFG + +I + D T + KG+ F+ Y E A+ +
Sbjct: 236 GPMKLYVGSLHYNITEEMLRGIFEPFGHVDNIQLMMDTETGRSKGYGFLTYRNAEDAKKA 295
Query: 103 LEQMNGVMLGGRNIKV 118
LE +NG + GR +KV
Sbjct: 296 LEHLNGFEIAGRPMKV 311
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + + F G ++ + M T++ KG A++E+ PE+ L++ +
Sbjct: 142 VFCMQLSKTIRARDLEEFFSSVGKVRDVRMITCNKTRRFKGIAYIEFKDPESVPLAM-GL 200
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSN-MPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
NG L G I V + R +N MP + + T + ++YV S+H ++TEE +
Sbjct: 201 NGQKLLGVPIVVQPTQAEKNRMANSMPN----MVQRTHYGPM--KLYVGSLHYNITEEML 254
Query: 166 K 166
+
Sbjct: 255 R 255
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P T P R+YVG++ + + F G + + + +D IT + +GFAFV
Sbjct: 110 PRTRPALGQEPGRIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTM 169
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVG 126
E A +++ NG +LGGR I+V+FP V G
Sbjct: 170 ATAEEAAKAVQMFNGALLGGRTIRVNFPEVPRG 202
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+VY G++ + ++ D ++ AF + + ++ T + +GF FV + E A +++
Sbjct: 226 KVYAGNLGWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQA 285
Query: 106 MNGVMLGGRNIKVHF 120
M+GV L GR +++
Sbjct: 286 MDGVELDGRPLRLSL 300
>gi|341893520|gb|EGT49455.1| CBN-TIAR-2 protein [Caenorhabditis brenneri]
Length = 420
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 31 QVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
Q G + ++ + V+VG +S E+ +++AFLPFG + + D T K KG+ F
Sbjct: 118 QPGDSSRKMDYSRHFHVFVGDLSSEIDSTKLKEAFLPFGEVSEAKIIRDTTTNKAKGYGF 177
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
V Y E A+ ++EQMNG LG R I+ ++
Sbjct: 178 VSYPRREDAERAIEQMNGQWLGRRTIRTNW 207
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG I L ED IR+AF FG I + + K +G+AFV+++ E A ++ QM
Sbjct: 255 VYVGQIG-SLTEDEIRRAFDRFGAINEVRIF------KLQGYAFVKFEQKEPAARAIVQM 307
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMP 132
N + G+ ++ + + G N P
Sbjct: 308 NNTEIMGQMVRCSWG--KSGDAGNKP 331
>gi|427776735|gb|JAA53819.1| Putative cyclophilin-type peptidyl-prolyl cis-trans isomerase
[Rhipicephalus pulchellus]
Length = 306
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG ++ E+ E + AF+PFG + + + D T+KH+GFAFVE++ E A +++ M
Sbjct: 9 VYVGGLAEEVDEKVLHAAFIPFGDLVDVQIPLDYETEKHRGFAFVEFESAEDAAAAIDNM 68
Query: 107 NGVMLGGRNIKVH 119
N L GR I+V+
Sbjct: 69 NDSELFGRTIRVN 81
>gi|168034678|ref|XP_001769839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678948|gb|EDQ65401.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 133
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++++G +++ E+T+R AF FG + + + D T + +GF FV + PE A+++
Sbjct: 43 SSSKLFIGGLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVA 102
Query: 103 LEQMNGVMLGGRNIKVHFP 121
L++M+G L GR I+V +
Sbjct: 103 LQEMDGRELAGRQIRVDYA 121
>gi|387915672|gb|AFK11445.1| peptidyl-prolyl cis-trans isomerase E-like protein [Callorhinchus
milii]
Length = 302
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAFVE++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDIMDIQIPLDYETEKHRGFAFVEFENAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|312086091|ref|XP_003144941.1| hypothetical protein LOAG_09365 [Loa loa]
Length = 394
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V+++ V+VG +S E+ ++ AF PFG + + D T K KG+ FV Y E
Sbjct: 129 VDTSKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREE 188
Query: 99 AQLSLEQMNGVMLGGRNIKVHF----PHVQVGRPSNMPQAQSVIDEITEEAKLYN-RIYV 153
A+ ++EQMNG LG R I+ ++ P + + D++ + N +YV
Sbjct: 189 AERAIEQMNGQWLGRRTIRTNWATRKPTGTGAGDGQYGRTELNYDDVYNQTGPDNTSVYV 248
Query: 154 ASIHPDLTEEDIK 166
+++ +ED++
Sbjct: 249 GNVNSSANDEDLR 261
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+++ ++ +R AF FG I + + K +G+AFV +D ++A ++ +M
Sbjct: 246 VYVGNVNSSANDEDLRAAFDKFGRILEVRIF------KSQGYAFVRFDKKDSACNAICKM 299
Query: 107 NGVMLGGRNIKVHF-----PHVQVGRPSNMPQ 133
NG L G+NIK + H Q N Q
Sbjct: 300 NGQELCGQNIKCSWGRTPEGHNQQANAYNQAQ 331
>gi|392884214|gb|AFM90939.1| peptidyl-prolyl cis-trans isomerase E-like protein [Callorhinchus
milii]
Length = 302
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAFVE++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDIMDIQIPLDYETEKHRGFAFVEFENAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|393909208|gb|EFO19127.2| hypothetical protein LOAG_09365 [Loa loa]
Length = 421
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V+++ V+VG +S E+ ++ AF PFG + + D T K KG+ FV Y E
Sbjct: 156 VDTSKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREE 215
Query: 99 AQLSLEQMNGVMLGGRNIKVHF----PHVQVGRPSNMPQAQSVIDEITEEAKLYN-RIYV 153
A+ ++EQMNG LG R I+ ++ P + + D++ + N +YV
Sbjct: 216 AERAIEQMNGQWLGRRTIRTNWATRKPTGTGAGDGQYGRTELNYDDVYNQTGPDNTSVYV 275
Query: 154 ASIHPDLTEEDIK 166
+++ +ED++
Sbjct: 276 GNVNSSANDEDLR 288
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+++ ++ +R AF FG I + + K +G+AFV +D ++A ++ +M
Sbjct: 273 VYVGNVNSSANDEDLRAAFDKFGRILEVRIF------KSQGYAFVRFDKKDSACNAICKM 326
Query: 107 NGVMLGGRNIKVHF-----PHVQVGRPSNMPQ 133
NG L G+NIK + H Q N Q
Sbjct: 327 NGQELCGQNIKCSWGRTPEGHNQQANAYNQAQ 358
>gi|432937500|ref|XP_004082430.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Oryzias
latipes]
Length = 302
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GF F+E+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFGFIEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L GR I+V+ + +P + + S
Sbjct: 68 NESELFGRTIRVN-----IAKPMRIKEGSS 92
>gi|426402318|ref|YP_007021289.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|425858986|gb|AFY00022.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
Length = 104
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++SF + +D + Q F FG + ++N+ D T + KGFAFVE A+ ++E+
Sbjct: 4 KIYVGNLSFNVDQDQLNQVFAEFGTVDTVNVITDRETGRSKGFAFVEMSTETEARAAIEK 63
Query: 106 MNGVMLGGRNIKV 118
+NG+ L GR + +
Sbjct: 64 LNGMDLAGRAMNI 76
>gi|182889546|gb|AAI65323.1| Ppie protein [Danio rerio]
Length = 302
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAF+E+++ E + +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDSAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L GR I+V+ + +P + + S
Sbjct: 68 NESELFGRTIRVN-----IAKPMRIKEGSS 92
>gi|292491403|ref|YP_003526842.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
gi|291579998|gb|ADE14455.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
Length = 91
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++ F+ +D IR+ F PFG + S+ + D T K +GF FVE D AA+ ++EQ+
Sbjct: 4 IYVGNLPFQCSQDEIRELFEPFGAVNSVKLISDRETGKPRGFGFVEMDHDAAAE-AIEQL 62
Query: 107 NGVMLGGRNIKVHFPHVQVGRP 128
NG GR ++++ + RP
Sbjct: 63 NGTDFKGRPLRINEARERTSRP 84
>gi|67517282|ref|XP_658521.1| hypothetical protein AN0917.2 [Aspergillus nidulans FGSC A4]
gi|40746790|gb|EAA65946.1| hypothetical protein AN0917.2 [Aspergillus nidulans FGSC A4]
gi|259488796|tpe|CBF88530.1| TPA: RNA splicing factor (Pad-1), putative (AFU_orthologue;
AFUA_1G15810) [Aspergillus nidulans FGSC A4]
Length = 552
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F + E+ ++ F PFG ++ + + D T + +G+ FV++ P A+ +LE+
Sbjct: 274 RLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEK 332
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
MNG LGGR I+V + + P N + QS
Sbjct: 333 MNGYDLGGRAIRVGLGNDKF-TPENTQRTQS 362
Score = 42.4 bits (98), Expect = 0.064, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 36 TPDVNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+P++N + R ++V ++ L+ + F GP+K + D ++ + KG +VE+
Sbjct: 163 SPELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEF 222
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
E++ Q+ G L G I + R + +A S + + ++R+YV
Sbjct: 223 K-DESSVAPAIQLTGQKLLGIPIIAQLTEAEKNRQARNSEASSG----NKHSAPFHRLYV 277
Query: 154 ASIHPDLTEEDIK 166
+IH + E D++
Sbjct: 278 GNIHFSIDENDLQ 290
>gi|242055771|ref|XP_002457031.1| hypothetical protein SORBIDRAFT_03g047450 [Sorghum bicolor]
gi|241929006|gb|EES02151.1| hypothetical protein SORBIDRAFT_03g047450 [Sorghum bicolor]
Length = 146
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G +S++ E ++ AF +G + ++ + P T K KGF FV++ A +L+++
Sbjct: 61 LFIGGLSYDTNETALKDAFSQYGDVIAVRVICHPTTGKSKGFGFVKFSSENQAAAALQKL 120
Query: 107 NGVMLGGRNIKVHFPHVQVGRPS 129
NG +L GRNI+VH+ + G +
Sbjct: 121 NGQVLDGRNIRVHYANSTWGSAA 143
>gi|348517411|ref|XP_003446227.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Oreochromis
niloticus]
Length = 302
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAF+E+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDIIDIQIPLDYETEKHRGFAFIEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L GR ++V+ + +P + + S
Sbjct: 68 NESELFGRTVRVN-----IAKPMRIKEGSS 92
>gi|442749963|gb|JAA67141.1| Putative rna-binding protein rrm superfamily [Ixodes ricinus]
Length = 863
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R++V ++S+ + ED I F FGPI +++S D IT+K KGFAFV + PE A + +
Sbjct: 325 RIFVRNLSYTVTEDDIEALFKKFGPISEVHLSIDKITRKPKGFAFVSFMFPEHAIKAFSE 384
Query: 106 MNGVMLGGR 114
++G +L GR
Sbjct: 385 LDGKLLQGR 393
Score = 37.0 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMS-----WDPITQKHKGFAFVEYDIPEAAQL 101
++V +++F ED +R+ F GPI + ++ +P G+ FV++ + ++A+
Sbjct: 634 LFVKNLNFSTTEDALREHFAGCGPIHEVTIAKKKDLKNPGKMLSMGYGFVQFKLKQSAKK 693
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+L+Q+ L +++ R + A + + T+ K +I V +I + T
Sbjct: 694 ALKQLQHSKLDEHAVELKLSK----RETAQQTAAELKRKKTDLGKESTKILVRNIPFEAT 749
Query: 162 EEDIK 166
+++++
Sbjct: 750 KKELQ 754
>gi|62955333|ref|NP_001017678.1| peptidyl-prolyl cis-trans isomerase E [Danio rerio]
gi|62531317|gb|AAH93329.1| Peptidylprolyl isomerase E (cyclophilin E) [Danio rerio]
Length = 302
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAF+E+++ E + +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDSAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L GR I+V+ + +P + + S
Sbjct: 68 NESELFGRTIRVN-----IAKPMRIKEGSS 92
>gi|224120444|ref|XP_002318331.1| predicted protein [Populus trichocarpa]
gi|222859004|gb|EEE96551.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YV +SF E+++R AF FG + +N+ D + ++ +GFAF+ Y+ E AQ ++E
Sbjct: 91 KLYVSGLSFRTTEESLRNAFQNFGQLVDVNLVMDKVAKRPRGFAFLRYETEEEAQKAIEG 150
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
M+G L GR I V+V +P
Sbjct: 151 MHGKFLDGRVI-----FVEVAKP 168
>gi|432884715|ref|XP_004074554.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oryzias latipes]
Length = 386
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + +++S V+VG +S E+ D I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFAPFGKISDCRVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHF----PHVQVGRPSNMPQAQSVIDEITEEAKLYN 149
A+ +++QM G LGGR I+ ++ P + S+ + Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTTNESSSSK-QLSFDEVVNQSSPSN 202
Query: 150 -RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 203 CTVYCGGVTTGLTEQIMR 220
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ P +YVG++S ++ E I + F GP KS M D T H + FVE+
Sbjct: 1 MDDEQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVD--TAGHDPYCFVEFYEHRH 58
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A ++ MNG + G+ +KV++ + P +Q ++ + ++V + P
Sbjct: 59 ATATIAAMNGRKILGKEVKVNW--------ATTPTSQK------KDTSSHFHVFVGDLSP 104
Query: 159 DLTEEDIK 166
++T +DIK
Sbjct: 105 EITTDDIK 112
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTTGLTEQIMRQTFSPFGQIMEIRVF------PEKGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
EAA ++ +NG + G +K ++
Sbjct: 249 EAAAHAIVSVNGTSIEGYVVKCYW 272
>gi|443695245|gb|ELT96187.1| hypothetical protein CAPTEDRAFT_148377 [Capitella teleta]
Length = 277
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+R+YVGS+ F + E+ +R F PFG I I + + T + +G+ F+ + E A+ +LE
Sbjct: 1 MRLYVGSLHFNITEEMLRGIFDPFGKIDDIKLMKNHETGRSQGYGFITFHTAEDAKKALE 60
Query: 105 QMNGVMLGGRNIKV 118
Q+NG L GR +KV
Sbjct: 61 QLNGFELAGRPMKV 74
>gi|299473131|emb|CBN78707.1| Peptidyl-prolyl cis-trans isomerase E [Ectocarpus siliculosus]
Length = 135
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 48/73 (65%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG + ++ E+ + AF+PFG I +N+ D + H+GF FVE+++ E A+ +++ M
Sbjct: 11 VYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNM 70
Query: 107 NGVMLGGRNIKVH 119
+G L G+ ++V+
Sbjct: 71 DGAELYGKVLRVN 83
>gi|159164266|pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ +YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 1 GSSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 60
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 61 RRALEQLNGFELAGRPMRV 79
>gi|83643344|ref|YP_431779.1| RNA-binding protein [Hahella chejuensis KCTC 2396]
gi|83631387|gb|ABC27354.1| RNA-binding protein (RRM domain) [Hahella chejuensis KCTC 2396]
Length = 92
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S+++ ED +R+AF +G I ++N+ D T + KGF FVE A+ +++
Sbjct: 1 MNIYVGNLSYQVTEDDLREAFAAYGDISNVNIIRDRDTGQSKGFGFVEMSDNGQAEEAIQ 60
Query: 105 QMNGVMLGGRNIKVH 119
++N L GRN+KV+
Sbjct: 61 KLNESNLKGRNMKVN 75
>gi|312371659|gb|EFR19788.1| hypothetical protein AND_21810 [Anopheles darlingi]
Length = 440
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++ ++VG +S E++ +T+R+AF PFG I + + DP T K +G+AFV +
Sbjct: 88 PKTDTSQHYHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG LG R+I+ ++
Sbjct: 148 AEAENAIQMMNGQWLGSRSIRTNW 171
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 24/127 (18%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINM----SWDPITQKHKGFAFVEYDIPEAA 99
P +YVG++ + E+ + F G +KS + S DP +AF+EY +A
Sbjct: 7 PKTLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIREASNDP-------YAFIEYASHTSA 59
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
Q +L MN + IKV++ P N P+ T+ ++ Y+ I+V + P+
Sbjct: 60 QTALAAMNKRFFLKKEIKVNW----ATSPGNQPK--------TDTSQHYH-IFVGDLSPE 106
Query: 160 LTEEDIK 166
+ E ++
Sbjct: 107 IETETLR 113
>gi|391336770|ref|XP_003742751.1| PREDICTED: RNA-binding protein 39-like [Metaseiulus occidentalis]
Length = 520
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
++ P+R+YVGS+ F++ E +++ F PFG + + + + T K KG+ FV + +AA
Sbjct: 264 STKGPMRLYVGSLHFDISEQMLKEIFEPFGRLDRVELIKED-TGKSKGYGFVTFHEADAA 322
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ ++EQ+NG L GR +KV
Sbjct: 323 KKAMEQLNGFELAGRPMKV 341
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ +S ++ + F G ++ + M D T+K KG A+VE+ E+ L++ +
Sbjct: 177 VFCMQLSQRIRARDLEDFFSAVGKVRDVRMIVDNKTRKSKGIAYVEFFDLESVPLAM-GL 235
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
NG L G I V + R +N A + K R+YV S+H D++E+ +K
Sbjct: 236 NGQKLFGVPIIVQPTQAERNRQANQTAAST---------KGPMRLYVGSLHFDISEQMLK 286
>gi|156358574|ref|XP_001624592.1| predicted protein [Nematostella vectensis]
gi|156211382|gb|EDO32492.1| predicted protein [Nematostella vectensis]
Length = 235
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 70/134 (52%), Gaps = 11/134 (8%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
++N+ ++VG ++ + +R+ F PFG I + + DP K KGF FV + E A
Sbjct: 82 DTNNHFHIFVGDLAENVDNALLRKTFEPFGEISEVRVVKDPAKNKSKGFGFVSFVRREDA 141
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVI-------DEITEEAKLYNRIY 152
++ +M+ V +GG+ +K ++ R +N Q++ V D + ++L +Y
Sbjct: 142 AKAIAEMDSVTIGGKQVKTNW----AARKNNPTQSKYVCVKNLLWDDVFHQSSQLNTTVY 197
Query: 153 VASIHPDLTEEDIK 166
V ++ PD+ + +++
Sbjct: 198 VGNLPPDVKDYELQ 211
>gi|193648018|ref|XP_001950341.1| PREDICTED: nucleolysin TIAR-like [Acyrthosiphon pisum]
Length = 388
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++++ ++VG +S E++ T+++AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKLDTSNHYHIFVGDLSPEIETHTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNR------ 150
A+ ++ MNG LG R+I+ ++ + P P S +T + +YN+
Sbjct: 148 SDAENAINSMNGQWLGSRSIRTNW-STRKPPPPRAPNKYSGYRAVTFD-DVYNQSSPTNC 205
Query: 151 -IYVASIHPDLTEE 163
+Y I LTEE
Sbjct: 206 TVYCGGIVEGLTEE 219
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 40 NSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
N +SP VY G I L E+ + Q F FG I I D KG+AF+++ E
Sbjct: 198 NQSSPTNCTVYCGGIVEGLTEELVEQVFSRFGTIVEIRAFRD------KGYAFIKFSTKE 251
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
AA ++E ++ + G +K F + G P++
Sbjct: 252 AATTAIEAVHNTEINGHPVKC-FWGKESGDPNS 283
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ ++P +YVG++ + E+ + F GP+ + + +P + +AF+E+D A
Sbjct: 3 DESNPRTLYVGNLDPSVTEELLCALFTNIGPVNACKVIREPGSDP---YAFLEFDTHSGA 59
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
+L MNG + + +KV++ P N P+ + + I+V + P+
Sbjct: 60 ATALAAMNGRLFLDKEMKVNWATT----PGNQPKL---------DTSNHYHIFVGDLSPE 106
Query: 160 LTEEDIK 166
+ +K
Sbjct: 107 IETHTLK 113
>gi|357610697|gb|EHJ67099.1| TIA-1-related RNA binding protein [Danaus plexippus]
Length = 388
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P ++++ ++VG +S E++ +R+AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKTDTSNHHHIFVGDLSPEIETHILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQ-------VGRPSNMPQAQSVIDEITEEAKLYN 149
A+ +++ MNG LG R+I+ ++ + G PS+ Q DE+ ++ N
Sbjct: 148 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPTKGPNEGAPSSKRVKQPTFDEVYNQSSPTN 207
Query: 150 -RIYVASIHPDLTEEDI 165
+Y ++ E++
Sbjct: 208 TTVYCGGFTSNVITEEL 224
>gi|357617301|gb|EHJ70708.1| putative peptidyl-prolyl cis-trans isomerase E [Danaus plexippus]
Length = 303
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
NS +YVG ++ E+ E + AF+PFG + + + D ++KH+GFAF+E++ E A
Sbjct: 6 NSKRTIYVGGLAEEVDEKILNAAFIPFGDLVDVQIPLDYESEKHRGFAFIEFENAEDAAA 65
Query: 102 SLEQMNGVMLGGRNIKVH 119
+++ MN L GR I+V+
Sbjct: 66 AIDNMNDSELFGRTIRVN 83
>gi|170055835|ref|XP_001863758.1| nucleolysin tia-1 [Culex quinquefasciatus]
gi|167875726|gb|EDS39109.1| nucleolysin tia-1 [Culex quinquefasciatus]
Length = 456
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++ ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKTDTSQHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG LG R+I+ ++
Sbjct: 148 AEAENAIQMMNGQWLGSRSIRTNW 171
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 24/127 (18%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINM----SWDPITQKHKGFAFVEYDIPEAA 99
P +YVG++ + ED + F G +KS + S DP +AF+EY ++A
Sbjct: 7 PKTLYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSDP-------YAFIEYASHQSA 59
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
Q +L MN + + IKV++ P N P+ + ++ I+V + P+
Sbjct: 60 QTALAAMNKRLFLKKEIKVNW----ATSPGNQPKT---------DTSQHHHIFVGDLSPE 106
Query: 160 LTEEDIK 166
+ E ++
Sbjct: 107 IETETLR 113
>gi|110756942|ref|XP_395357.3| PREDICTED: nucleolysin TIAR [Apis mellifera]
gi|340713958|ref|XP_003395500.1| PREDICTED: nucleolysin TIAR-like [Bombus terrestris]
gi|350421173|ref|XP_003492759.1| PREDICTED: nucleolysin TIAR-like [Bombus impatiens]
gi|380025693|ref|XP_003696603.1| PREDICTED: nucleolysin TIAR-like [Apis florea]
Length = 392
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++++ ++VG +S E++ T+++AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ ++ MNG LG R+I+ ++
Sbjct: 148 SEAEAAIAAMNGQWLGSRSIRTNW 171
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 40 NSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
N +SP VY G + + +D I + F PFG I+ I + K KG+AF+++ E
Sbjct: 199 NQSSPTNCTVYCGGFTNGITDDLITKTFSPFGTIQDIRVF------KDKGYAFIKFTTKE 252
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM-PQAQSVIDEITEEAKLYNRIY 152
AA ++E + + G +K F + G P+++ P A ++T A Y Y
Sbjct: 253 AATHAIESTHNTEINGSIVKC-FWGKENGDPNSVGPNANHQAQQVTAGAGQYAYGY 307
>gi|6007762|gb|AAF01030.1|AF182825_1 cyclophilin-33 [Mus musculus]
Length = 298
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 5 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAPAIDNM 64
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 65 NESELFGRTIRVNL 78
>gi|343459003|gb|AEM37660.1| cold inducible RNA binding protein [Epinephelus bruneus]
Length = 176
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SFE E+++ AF +G I+ +++ D T + +GF FV+YD + A+ +LE
Sbjct: 6 KLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNSDDAKDALEG 65
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 66 MNGKTLDGRAIRV 78
>gi|78356222|ref|YP_387671.1| RNP-1 like RNA-binding protein [Desulfovibrio alaskensis G20]
gi|78218627|gb|ABB37976.1| RNP-1 like RNA-binding protein [Desulfovibrio alaskensis G20]
Length = 114
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S+++ ED +R AF FG + + + D T + KGF FVE A ++E
Sbjct: 1 MNIYVGNLSYQMSEDDLRGAFEEFGAVDKVRIITDHDTGRSKGFGFVEMAEDSEANAAIE 60
Query: 105 QMNGVMLGGRNIKVH 119
+NG +GGR+I V+
Sbjct: 61 ALNGREMGGRSITVN 75
>gi|195445204|ref|XP_002070221.1| GK11939 [Drosophila willistoni]
gi|194166306|gb|EDW81207.1| GK11939 [Drosophila willistoni]
Length = 469
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 147 AEAENAIQAMNGQWIGSRSIRTNW 170
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDGSVSEDLLIALFGKMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ATTALTAMNKRVFLEKEIKVNW----ATSPGNQPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 40 NSNSPLR--VYVGSISFE-LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
N +SP VY G + +D + + F+ FGPI+ + + K KGFAF+++
Sbjct: 215 NQSSPTNTTVYCGGFPPNVISDDLMHKHFMQFGPIQDVRVF------KEKGFAFIKFVTK 268
Query: 97 EAAQLSLEQMNGVMLGGRNIK 117
EAA ++E + + G +K
Sbjct: 269 EAAARAIEHTHISEVHGSQVK 289
>gi|24649519|ref|NP_732945.1| Rox8, isoform D [Drosophila melanogaster]
gi|442620772|ref|NP_732944.2| Rox8, isoform E [Drosophila melanogaster]
gi|442620774|ref|NP_001262897.1| Rox8, isoform G [Drosophila melanogaster]
gi|442620776|ref|NP_001262898.1| Rox8, isoform H [Drosophila melanogaster]
gi|23172126|gb|AAN13978.1| Rox8, isoform D [Drosophila melanogaster]
gi|211938549|gb|ACJ13171.1| FI04408p [Drosophila melanogaster]
gi|440217818|gb|AAN13977.2| Rox8, isoform E [Drosophila melanogaster]
gi|440217819|gb|AGB96277.1| Rox8, isoform G [Drosophila melanogaster]
gi|440217820|gb|AGB96278.1| Rox8, isoform H [Drosophila melanogaster]
Length = 470
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 147 AEAENAIQAMNGQWIGSRSIRTNW 170
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ATTALTAMNKRLFLEKEIKVNW----ATSPGNQPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
>gi|47219549|emb|CAG09903.1| unnamed protein product [Tetraodon nigroviridis]
Length = 326
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G ++ E+ E + AF+PFG + I + D T+KH+GFAF+E+++ E A +++ M
Sbjct: 8 LYIGGLAEEVDEKVLHAAFIPFGDLIDIQIPLDYETEKHRGFAFIEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L GR I+V+ + +P + + S
Sbjct: 68 NESELFGRTIRVN-----IAKPMRIKEGSS 92
>gi|37681959|gb|AAQ97857.1| TIA1 cytotoxic granule-associated RNA binding protein [Danio rerio]
gi|160773363|gb|AAI55270.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ D +R AF PFG I + D T K KG+ F+ +
Sbjct: 86 PSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVRDLATGKSKGYGFISF 145
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP-SNMPQAQS---VIDEITEEAKLYN 149
A+ +++QMNG LGGR I+ ++ + P SN A S +E+ ++ N
Sbjct: 146 INKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSN 205
Query: 150 -RIYVASIHPDLTEEDIK 166
+Y I L+++ ++
Sbjct: 206 CTVYCGGIASGLSDQLMR 223
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
+N +SP VY G I+ L + +RQ F PFG I I + KG++FV +D
Sbjct: 198 LNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFDSH 251
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E A ++ +NG + G +K ++
Sbjct: 252 EGAAHAIVSVNGTCIEGHTVKCYW 275
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++S ++ E I Q F GP KS M D T + + FVE+
Sbjct: 3 MDEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRH 60
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MNG + G+++KV++ ++ P +Q ++ + ++V + P
Sbjct: 61 AAAALAAMNGRKILGKDMKVNW--------ASTPSSQK------KDTSNHFHVFVGDLSP 106
Query: 159 DLTEEDIK 166
+++ +D++
Sbjct: 107 EISTDDVR 114
>gi|452821788|gb|EME28814.1| hypothetical protein Gasu_37050 [Galdieria sulphuraria]
Length = 124
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG + ++ E+ + AF+PFG + + M D TQ+H+GFAF+E+++PE A + E M
Sbjct: 6 LYVGGLDPQVTEEILWAAFVPFGDLLDVTMPLDNETQQHRGFAFIEFELPEDAASAKENM 65
Query: 107 NGVMLGGRNIKVHFPH---VQVGRP 128
+ + GR ++V + + G+P
Sbjct: 66 DDSEMFGRRLRVAYTRPSSIGAGKP 90
>gi|384916047|ref|ZP_10016247.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
gi|384526575|emb|CCG92118.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
Length = 99
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ F + E+ +R+ F +G + IN+ D +T + +GFAFV + +AAQ +++
Sbjct: 5 RLYVGNLPFRISENDLRELFEQYGQVNEINLIVDKMTGQSRGFAFVTMETSQAAQSAIDS 64
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
+NG + GR I V+ + RP
Sbjct: 65 LNGTSISGRQIVVNEAKPREERP 87
>gi|17944383|gb|AAL48083.1| RE71384p [Drosophila melanogaster]
Length = 470
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 147 AEAENAIQAMNGQWIGSRSIRTNW 170
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ATTALTAMNKRLFLEKEIKVNW----ATSPGNQPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
>gi|83643064|ref|YP_431499.1| RNA-binding protein [Hahella chejuensis KCTC 2396]
gi|83631107|gb|ABC27074.1| RNA-binding protein (RRM domain) [Hahella chejuensis KCTC 2396]
Length = 90
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++++ + E+ +R+AF FG + S N+ D T + KGFAFVE A +++
Sbjct: 1 MNIYVGNLAYGVTEEELREAFSSFGEVTSANLIIDRNTGQSKGFAFVEMSNNSEADAAIK 60
Query: 105 QMNGVMLGGRNIKVH 119
+N L GRNIKV+
Sbjct: 61 GLNDTALKGRNIKVN 75
>gi|440906315|gb|ELR56591.1| Putative RNA-binding protein 23 [Bos grunniens mutus]
Length = 463
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ + ED +R PFG I +I + D T + KG+ F+ + E A
Sbjct: 273 GNGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECA 332
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +++
Sbjct: 333 RRALEQLNGFELAGRPMRI 351
>gi|194910009|ref|XP_001982056.1| GG12380 [Drosophila erecta]
gi|190656694|gb|EDV53926.1| GG12380 [Drosophila erecta]
Length = 464
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 147 AEAENAIQAMNGQWIGSRSIRTNW 170
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFGTMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ATTALTAMNKRLFLDKEIKVNW----ATSPGNQPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
>gi|383863609|ref|XP_003707272.1| PREDICTED: nucleolysin TIAR-like [Megachile rotundata]
Length = 392
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++++ ++VG +S E++ T+++AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ ++ MNG LG R+I+ ++
Sbjct: 148 SEAEAAIAAMNGQWLGSRSIRTNW 171
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 40 NSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
N +SP VY G + + ++ I + F PFG I+ I + K KG+AF+++ E
Sbjct: 199 NQSSPTNCTVYCGGFTNGITDELINKTFSPFGTIQDIRVF------KDKGYAFIKFTTKE 252
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM-PQAQSVIDEITEEAKLYNRIY 152
AA ++E + + G +K F + G P+++ P A ++T A Y Y
Sbjct: 253 AATHAIESTHNTEINGSIVKC-FWGKENGDPNSVGPNANHQAQQVTAGAGQYAYGY 307
>gi|195504962|ref|XP_002099304.1| GE10834 [Drosophila yakuba]
gi|194185405|gb|EDW99016.1| GE10834 [Drosophila yakuba]
Length = 464
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 147 AEAENAIQAMNGQWIGSRSIRTNW 170
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFGTMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ATTALTAMNKRLFLDKEIKVNW----ATSPGNQPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
>gi|357625522|gb|EHJ75940.1| hypothetical protein KGM_20346 [Danaus plexippus]
Length = 245
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++VG +S E++ +R AF PFG I + DP T K KG+ FV + A+ ++ M
Sbjct: 56 IFVGDLSPEIETQNLRDAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKKSEAESAITAM 115
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV-IDEITEEAKLYN-RIYVASIHPDLTEE 163
NG LG R+I+ ++ + P N ++ + DE+ ++ N +Y + LTEE
Sbjct: 116 NGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSPTNCTVYCGGLTAGLTEE 174
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 34 PITPD--VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
P+T D N +SP VY G ++ L E+ +++ F PFG I+ I + K KG+A
Sbjct: 145 PLTFDEVYNQSSPTNCTVYCGGLTAGLTEELMQKTFQPFGTIQEIRVF------KDKGYA 198
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
F+ + E+A ++ ++ + G +K + + G P+N AQ +
Sbjct: 199 FIRFSTKESATHAIVAVHNADVNGAPVKCSWGK-ESGDPNNAQGAQVI 245
>gi|67970111|dbj|BAE01400.1| unnamed protein product [Macaca fascicularis]
Length = 301
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T++H+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEEHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>gi|340370502|ref|XP_003383785.1| PREDICTED: RNA-binding protein 39-like [Amphimedon queenslandica]
Length = 497
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 51/80 (63%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+ P ++YVGS+ + + ED ++ F PFG ++ +++ D T +G+AFVE+ ++A+
Sbjct: 246 AEGPKKLYVGSLHYNITEDMLQGIFSPFGNVERVSIMRDTATNVSRGYAFVEFRDSDSAE 305
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
++ +NG L GR +KV++
Sbjct: 306 RAMANLNGFELAGRPMKVNY 325
>gi|195331490|ref|XP_002032434.1| GM23518 [Drosophila sechellia]
gi|194121377|gb|EDW43420.1| GM23518 [Drosophila sechellia]
Length = 464
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 147 AEAENAIQAMNGQWIGSRSIRTNW 170
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDTSVSEDLLIALFSTMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ASTALTAMNKRLFLEKEIKVNW----ATSPGNQPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
>gi|24649513|ref|NP_732942.1| Rox8, isoform B [Drosophila melanogaster]
gi|24649515|ref|NP_732943.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301090|gb|AAF56224.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301091|gb|AAF56225.1| Rox8, isoform B [Drosophila melanogaster]
Length = 464
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 147 AEAENAIQAMNGQWIGSRSIRTNW 170
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ATTALTAMNKRLFLEKEIKVNW----ATSPGNQPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
>gi|322795213|gb|EFZ18035.1| hypothetical protein SINV_11488 [Solenopsis invicta]
Length = 455
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++++ ++VG +S E++ T+++AF PFG I + + DP T K KG+AFV +
Sbjct: 160 PKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 219
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ ++ MNG LG R+I+ ++
Sbjct: 220 SEAEAAINAMNGQWLGSRSIRTNW 243
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y G + + ++ I++ F PFG I+ I + K KG+AF+++ EAA ++E
Sbjct: 270 LYCGGFTNGITDELIKKTFSPFGTIQDIRVF------KDKGYAFIKFTTKEAATHAIEST 323
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNM-PQAQSVIDEITEEAKLY 148
+ + G +K F + G P+++ P A ++T A Y
Sbjct: 324 HNTEINGSIVKC-FWGKENGDPNSVGPNANHQAQQVTAGAGQY 365
>gi|225464267|ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|296088019|emb|CBI35302.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P +P+ S R+YV +SF E+++R AF FG + +N+ D I + +GFAF+ Y
Sbjct: 68 PSSPNQPSIPKTRLYVSGLSFRTTEESLRNAFETFGQLVEVNLVMDKIANRPRGFAFLRY 127
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP-SNMPQAQS 136
E ++ ++E M+G L GR I V+V +P S + Q Q+
Sbjct: 128 STEEESEKAIEGMHGKFLDGRVI-----FVEVAKPRSELRQNQN 166
>gi|125775095|ref|XP_001358799.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|195144954|ref|XP_002013461.1| GL24152 [Drosophila persimilis]
gi|54638540|gb|EAL27942.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|194102404|gb|EDW24447.1| GL24152 [Drosophila persimilis]
Length = 464
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 147 AEAENAIQAMNGQWIGSRSIRTNW 170
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + E+ + F G +K+ + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEELLIALFGTMGAVKNCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ASTALTAMNKRLFLEKEIKVNW----ATSPGNQPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
>gi|410898226|ref|XP_003962599.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Takifugu
rubripes]
gi|19526273|gb|AAL89667.1|AF411956_8 cyclophilin [Takifugu rubripes]
Length = 300
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G ++ E+ E + AF+PFG + I + D T+KH+GFAF+E+++ E A +++ M
Sbjct: 8 LYIGGLAEEVDEKVLHAAFIPFGDLIDIQIPLDYETEKHRGFAFIEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L GR I+V+ + +P + + S
Sbjct: 68 NESELFGRTIRVN-----IAKPMRIKEGSS 92
>gi|41055734|ref|NP_956476.1| TIA1 cytotoxic granule-associated RNA binding protein 1 [Danio
rerio]
gi|28277744|gb|AAH45485.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
gi|44890544|gb|AAH66734.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ D +R AF PFG I + D T K KG+ F+ +
Sbjct: 86 PSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISF 145
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP-SNMPQAQS---VIDEITEEAKLYN 149
A+ +++QMNG LGGR I+ ++ + P SN A S +E+ ++ N
Sbjct: 146 INKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSN 205
Query: 150 -RIYVASIHPDLTEEDIK 166
+Y I L+++ ++
Sbjct: 206 CTVYCGGIASGLSDQLMR 223
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
+N +SP VY G I+ L + +RQ F PFG I I + KG++FV +D
Sbjct: 198 LNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFDSH 251
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E A ++ +NG + G +K ++
Sbjct: 252 EGAAHAIVSVNGTCIEGHTVKCYW 275
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++S ++ E I Q F GP KS M D T + + FVE+
Sbjct: 3 MDEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRH 60
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MNG + G+++KV++ ++ P +Q ++ + ++V + P
Sbjct: 61 AAAALAAMNGRKILGKDMKVNW--------ASTPSSQK------KDTSNHFHVFVGDLSP 106
Query: 159 DLTEEDIK 166
+++ +D++
Sbjct: 107 EISTDDVR 114
>gi|242021493|ref|XP_002431179.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
gi|212516428|gb|EEB18441.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
Length = 403
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++S ++VG +S E++ T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 90 PKQDTSSHHHIFVGDLSPEIEMHTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 149
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ ++ MNG LG R+I+ ++
Sbjct: 150 AEAESAIHAMNGQWLGNRSIRTNW 173
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 40 NSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
N +SP VY G + + ED I +AF FG I+ I + K KG+AF+ + E
Sbjct: 201 NQSSPTNCTVYCGGFTNGINEDLIEKAFSRFGTIQDIR------SFKDKGYAFIRFSTKE 254
Query: 98 AAQLSLEQMNGVMLGGRNIK 117
AA ++E M+ + G+ +K
Sbjct: 255 AATHAIEAMHNAEINGQQVK 274
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N P +YVG++ + ED + F G +K + +P + +AFVE+ +AA
Sbjct: 7 NYPKTLYVGNLDVSVTEDLLCTLFSQIGSVKGCKIIREP---NNDPYAFVEFVNHQAAST 63
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+L MN + + IKV++ P N P+ ++ ++ I+V + P++
Sbjct: 64 ALIAMNKRHVLEKEIKVNW----ATSPGNQPK---------QDTSSHHHIFVGDLSPEIE 110
Query: 162 EEDIK 166
++
Sbjct: 111 MHTLR 115
>gi|348542282|ref|XP_003458614.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oreochromis
niloticus]
Length = 386
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + +++S V+VG +S E+ D I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFAPFGKISDCRVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ-----VGRPSNMPQAQSVIDEITEEAKLY 148
A+ +++QM G LGGR I+ ++ + +N Q DE+ ++
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTTSETTNTKQLS--FDEVVNQSSPS 201
Query: 149 N-RIYVASIHPDLTEEDIK 166
N +Y + LTE+ ++
Sbjct: 202 NCTVYCGGVTTGLTEQIMR 220
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++S ++ E I + F GP KS M D T H + FVE+
Sbjct: 1 MDDDQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVD--TAGHDPYCFVEFYEHRH 58
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A ++ MNG + G+ +KV++ + P +Q ++ + ++V + P
Sbjct: 59 ATATIAAMNGRKILGKEVKVNW--------ATTPTSQK------KDTSSHFHVFVGDLSP 104
Query: 159 DLTEEDIK 166
++T +DIK
Sbjct: 105 EITTDDIK 112
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTTGLTEQIMRQTFSPFGQIMEIRVF------PEKGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
EAA ++ +NG + G +K ++
Sbjct: 249 EAAAHAIVSVNGTSIEGYVVKCYW 272
>gi|374376206|ref|ZP_09633864.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373233046|gb|EHP52841.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 110
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S+ LK+ ++ F P+G + S + D T + KGF FVE E A+ ++E
Sbjct: 1 MNIYVGNLSWNLKDQDLQNLFAPYGEVTSAKIVSDKFTNRSKGFGFVEMATDEEAKAAIE 60
Query: 105 QMNGVMLGGRNIKVH 119
+NG + GRNI V+
Sbjct: 61 ALNGTEVDGRNIVVN 75
>gi|448521353|ref|XP_003868484.1| Pub1 protein [Candida orthopsilosis Co 90-125]
gi|380352824|emb|CCG25580.1| Pub1 protein [Candida orthopsilosis]
Length = 426
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+VG +S E+ ++ +++AF F K ++ WD T + +G+ FV + E A+L+L+ M
Sbjct: 153 VFVGDLSSEVNDEALKKAFNKFDSFKEAHVMWDMQTSRSRGYGFVTFGKQEDAELALQTM 212
Query: 107 NGVMLGGRNIKVHF 120
NG LGGR I+ ++
Sbjct: 213 NGEWLGGRAIRCNW 226
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHK---GFAFVEYDIPEAAQLSL 103
+YVG++ E+ I + F PIKSI + + K+K +AF+E+D + A ++L
Sbjct: 61 LYVGNLPKSASEEQISKLFSVSKPIKSIKL----LNDKNKLGFNYAFIEFDENQDADMAL 116
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
+NG +L IKV++ + Q+ ++ T E YN ++V + ++ +E
Sbjct: 117 STLNGKLLNNCEIKVNWAY----------QSATIASNSTPEDPTYN-VFVGDLSSEVNDE 165
Query: 164 DIK 166
+K
Sbjct: 166 ALK 168
>gi|168044555|ref|XP_001774746.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673901|gb|EDQ60417.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 83
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D NS V+VG +S+E ED +++AF+ FG + S+ + +D + + +GF FV + P
Sbjct: 3 DANS-----VHVGGLSYESSEDAVKKAFIEFGEVVSVKIVYDRESGESRGFGFVSFTNPR 57
Query: 98 AAQLSLEQMNGVMLGGRNIKVH 119
+A +++ M+G + GR I+V+
Sbjct: 58 SATMAIRDMDGGQIEGRTIRVN 79
>gi|449540824|gb|EMD31812.1| hypothetical protein CERSUDRAFT_88684 [Ceriporiopsis subvermispora
B]
Length = 292
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++VG++S++ EDT+ + F +G IKS+ + D T K KGFA+VE+ EA++ + E
Sbjct: 146 LFVGNLSWDATEDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFSDIEASKKAFEGA 205
Query: 107 NGVMLGGRNIKVHFPH 122
G + GRNI+V F
Sbjct: 206 AGAEVAGRNIRVDFSQ 221
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S++ ++VG +S+ + D + Q F G + S + D T K +GF +V + EA
Sbjct: 40 SDATKTIFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTFATVEAVD 99
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDL 160
++ Q NG + GR + + + +A++ D+ +E + + ++V ++ D
Sbjct: 100 AAIAQ-NGKEIDGRAVNIDKSIEKDKGAVRQKRAEAYGDKASEPSSV---LFVGNLSWDA 155
Query: 161 TEE 163
TE+
Sbjct: 156 TED 158
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E+++ +AF +G I +++ D T + +GF FV+YD E A+ +L+
Sbjct: 6 KLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDG 65
Query: 106 MNGVMLGGRNIKV 118
MNG + GR I+V
Sbjct: 66 MNGKSVDGRTIRV 78
>gi|332029721|gb|EGI69600.1| Nucleolysin TIAR [Acromyrmex echinatior]
Length = 393
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++++ ++VG +S E++ T+++AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ ++ MNG LG R+I+ ++
Sbjct: 148 SEAEAAINAMNGQWLGSRSIRTNW 171
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 40 NSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
N +SP VY G + + ++ I++ F PFG I+ I + K KG+AF+++ E
Sbjct: 199 NQSSPTNCTVYCGGFTNGITDELIKKTFSPFGTIQDIRVF------KDKGYAFIKFTTKE 252
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM-PQAQSVIDEITEEAKLYNRIY 152
AA ++E + + G +K F + G P+++ P A ++T A Y Y
Sbjct: 253 AATHAIESTHNTEINGSIVKC-FWGKENGDPNSVGPNANHQAQQVTAGAGQYAYGY 307
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
++P +YVG++ + ED + F G +K + +P + +AFVE+ + A
Sbjct: 5 SNPRTLYVGNLDTSVSEDLLCALFSQIGAVKGCKIIREP---GNDPYAFVEFTNHQCAAT 61
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+L MN + +KV++ P N P+ + ++ I+V + P++
Sbjct: 62 ALAAMNKRSFLDKEMKVNW----ATSPGNQPKL---------DTSNHHHIFVGDLSPEIE 108
Query: 162 EEDIK 166
+ +K
Sbjct: 109 TQTLK 113
>gi|345563952|gb|EGX46935.1| hypothetical protein AOL_s00097g361 [Arthrobotrys oligospora ATCC
24927]
Length = 546
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F + E+ ++Q F PFG ++ + + + + + +G+ FV+Y P A+ +LE+
Sbjct: 268 RLYVGNIHFSITENELQQVFAPFGDLEFVQLQKEE-SGRSRGYGFVQYRDPNNAKEALER 326
Query: 106 MNGVMLGGRNIKV 118
MNG LGGR I+V
Sbjct: 327 MNGFDLGGRLIRV 339
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY----DIPEAAQLS 102
V+V ++ L+ + F G +K + D ++ + KG +VE+ +P+A L+
Sbjct: 166 VFVQQLAARLRTKELIAFFEKVGGVKEAQIVKDRVSGRSKGVGYVEFKEAESVPKAIALT 225
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTE 162
+++ G+ I V + R + Q DE ++R+YV +IH +TE
Sbjct: 226 GQRLLGI-----PIIVQLTEAEKNRQARAEGGQHNRDEDHRRTIPFHRLYVGNIHFSITE 280
Query: 163 EDIK 166
+++
Sbjct: 281 NELQ 284
>gi|219115986|ref|XP_002178788.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409555|gb|EEC49486.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ +R AF+PFG +KS+++ D ++ KHKGFAFVE P+ ++ M
Sbjct: 8 LYVGGLADSASVQVVRAAFIPFGAVKSLDIPMDYVSGKHKGFAFVELGDPDDVTEAIFNM 67
Query: 107 NGVMLGGRNIKVHFPH 122
+G L GR +KV
Sbjct: 68 DGAELLGRTLKVSLAQ 83
>gi|55733834|gb|AAV59341.1| unknown protein [Oryza sativa Japonica Group]
gi|125551313|gb|EAY97022.1| hypothetical protein OsI_18943 [Oryza sativa Indica Group]
gi|222630664|gb|EEE62796.1| hypothetical protein OsJ_17599 [Oryza sativa Japonica Group]
Length = 102
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 38 DVNSNSPL--RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
D SPL RVYVG++ F + +++ +F +G I S ++WD + + +GF FV ++
Sbjct: 9 DYKDRSPLEYRVYVGNLPFSANDRSLKDSFANYGAI-SAEIAWDSVMGRSRGFGFVNFED 67
Query: 96 PEAAQLSLEQMNGVMLGGRNIKV 118
E+ +++ MNG +GGRN+ V
Sbjct: 68 SESVNAAIQGMNGQDIGGRNVTV 90
>gi|324508128|gb|ADY43435.1| RNA-binding protein 39 [Ascaris suum]
Length = 535
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N+ PL++Y+G + + ED +R+ F PFG I ++ ++ D ++ KG+A+V + +
Sbjct: 263 TNTTGPLKLYIGQLHTSITEDMLRRIFEPFGKIDTLEIATD-LSGVSKGYAYVTFRHADD 321
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ ++EQMNG L GR +KV
Sbjct: 322 AKRAMEQMNGFELAGRPMKV 341
>gi|115397599|ref|XP_001214391.1| hypothetical protein ATEG_05213 [Aspergillus terreus NIH2624]
gi|114192582|gb|EAU34282.1| hypothetical protein ATEG_05213 [Aspergillus terreus NIH2624]
Length = 568
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 40 NSNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N +P R+YVG+I F + E ++ F PFG ++ + + D T + +G+ FV++ P
Sbjct: 271 NHAAPFHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQ 329
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A+ +LE+MNG L GR I+V + + SN + QS
Sbjct: 330 AREALEKMNGFDLAGRAIRVGLGNDKFTPESNAQRMQS 367
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 36 TPDVNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+P++N + R ++V ++ L+ + F GP+K + D ++ + KG +VE+
Sbjct: 167 SPELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEF 226
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
E+ ++ Q+ G L G I + R + P+A S + A ++R+YV
Sbjct: 227 KNEESVAPAI-QLTGQKLLGIPIIAQLTEAEKNRQARNPEASSG----SNHAAPFHRLYV 281
Query: 154 ASIHPDLTEEDIK 166
+IH +TE D++
Sbjct: 282 GNIHFSITESDLQ 294
>gi|239904808|ref|YP_002951546.1| RNA-binding protein [Desulfovibrio magneticus RS-1]
gi|239794671|dbj|BAH73660.1| RNA-binding protein [Desulfovibrio magneticus RS-1]
Length = 94
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++SF ED IR F +G + S+N+ D T + +GF FVE D E A+ ++
Sbjct: 4 KLYVGNLSFNSTEDDIRTQFSNYGEVISVNLITDRETGRLRGFGFVEMD-DEGARAAIAG 62
Query: 106 MNGVMLGGRNIKVH 119
M+G GGRN+KV+
Sbjct: 63 MDGQDFGGRNLKVN 76
>gi|358342623|dbj|GAA50048.1| RNA-binding protein Musashi, partial [Clonorchis sinensis]
Length = 694
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 28 DLKQVGPITPDVN----SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQ 83
D K+V P ++N + L+++VG ISFE E TIR F +G + +N+ P Q
Sbjct: 497 DHKEVDPKRCNINMKGKNRRSLKIFVGGISFEHDESTIRNFFSKYGRVTDVNLLTSPNKQ 556
Query: 84 KHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+H+GFAFV +D E + +L +M+ + L G+ ++V
Sbjct: 557 RHRGFAFVGFDDEEVVK-NLIRMHFLNLDGKQVEV 590
>gi|307178104|gb|EFN66931.1| Nucleolysin TIAR [Camponotus floridanus]
Length = 393
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++++ ++VG +S E++ T+++AF PFG I + + DP T K KG+AFV +
Sbjct: 88 PKLDTSNHHHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ ++ MNG LG R+I+ ++
Sbjct: 148 SEAEAAINAMNGQWLGSRSIRTNW 171
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 40 NSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
N +SP VY G + + ++ I++ F PFG I+ I + K KG+AF+++ E
Sbjct: 199 NQSSPTNCTVYCGGFTNGITDELIKKTFSPFGTIQDIRVF------KDKGYAFIKFTTKE 252
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM-PQAQSVIDEITEEAKLYNRIY 152
AA ++E + + G +K F + G P+++ P A ++T Y Y
Sbjct: 253 AATHAIESTHNTEINGSIVKC-FWGKENGDPNSVGPNANHQAQQVTAGVGQYAYGY 307
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
++P +YVG++ + ED + F G +K + +P + +AFVE+ ++A
Sbjct: 5 SNPRTLYVGNLDASVSEDLLCALFSQIGAVKGCKIIREP---GNDPYAFVEFTNHQSAAT 61
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
+L MN + +KV++ P N P+ + ++ I+V + P++
Sbjct: 62 ALAAMNKRSFLDKEMKVNW----ATSPGNQPKL---------DTSNHHHIFVGDLSPEIE 108
Query: 162 EEDIK 166
+ +K
Sbjct: 109 TQTLK 113
>gi|317152544|ref|YP_004120592.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942795|gb|ADU61846.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
Length = 87
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++S+ ED +R AF +G + S+N+ D T + +GF FVE D A+ ++
Sbjct: 4 KLYVGNLSWSSTEDDVRAAFEAYGEVTSVNLIEDRETGRPRGFGFVEMDDA-GAREAIAA 62
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
++G GGRNIKV+ + RP
Sbjct: 63 LDGKEFGGRNIKVNEAKAREERP 85
>gi|225703276|gb|ACO07484.1| Peptidyl-prolyl cis-trans isomerase E [Oncorhynchus mykiss]
Length = 302
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG + + D T+KH+GFAF+E+++ E A +++ M
Sbjct: 8 LYVGGLTEEVDEKVLHAAFIPFGDVTDTQIPIDYETEKHRGFAFIEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L GR I+V+ + +P + + S
Sbjct: 68 NESELFGRTIRVN-----IAKPMRIKEGSS 92
>gi|324507842|gb|ADY43315.1| RNA-binding protein 39 [Ascaris suum]
Length = 618
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N+ PL++Y+G + + ED +R+ F PFG I ++ ++ D ++ KG+A+V + +
Sbjct: 346 TNTTGPLKLYIGQLHTSITEDMLRRIFEPFGKIDTLEIATD-LSGVSKGYAYVTFRHADD 404
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ ++EQMNG L GR +KV
Sbjct: 405 AKRAMEQMNGFELAGRPMKV 424
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++++ +++D ++QAF FG + S + D T + KGF FVE AQ ++E
Sbjct: 4 KLYVGNLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEG 63
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
MNG L GR I V+ + RP
Sbjct: 64 MNGQSLSGRAIVVNEARPREERP 86
>gi|406880229|gb|EKD28634.1| RNA-binding protein [uncultured bacterium]
Length = 95
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+++YVG++S++ E+ +RQ F GP+ S+NM D T + KGFAFVE + ++
Sbjct: 1 MKLYVGNLSYDATEEDVRQIFEGVGPVSSVNMITDRDTGRPKGFAFVEMENKNDGDKAIS 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRP 128
++N V + GR+IKV V RP
Sbjct: 61 ELNDVDVKGRSIKVS-----VARP 79
>gi|358370208|dbj|GAA86820.1| RNA splicing factor (Pad-1) [Aspergillus kawachii IFO 4308]
Length = 571
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 40 NSNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N +P R+YVG+I F + E ++ F PFG ++ + + D T + +G+ FV++ P
Sbjct: 274 NHAAPFHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQ 332
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A+ +LE+MNG L GR I+V + + SN + QS
Sbjct: 333 AREALEKMNGFDLAGRAIRVGLGNDKFTPDSNAQRMQS 370
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++V ++ L+ + F GP+K + D ++ + KG +VE+ +A ++ Q+
Sbjct: 183 IFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKSEDAVAPAI-QL 241
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G L G I + R + P+A S A ++R+YV +IH +TE D++
Sbjct: 242 TGQKLLGIPIIAQLTEAEKNRQARNPEASSG----NNHAAPFHRLYVGNIHFSITESDLQ 297
>gi|324522371|gb|ADY48048.1| Peptidyl-prolyl cis-trans isomerase E, partial [Ascaris suum]
Length = 314
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N +YVG E+ E + FLPFG I I++ D T KH+GF FVE+++ E A
Sbjct: 10 NRKRTLYVGGFGEEVDEKILHAGFLPFGDIVGISIPMDYETGKHRGFGFVEFELAEDAAA 69
Query: 102 SLEQMNGVMLGGRNIKVHF 120
+++ MN + GR I+ +F
Sbjct: 70 AIDNMNDSEMFGRTIRCNF 88
>gi|145231104|ref|XP_001389816.1| RNA-binding protein rsd1 [Aspergillus niger CBS 513.88]
gi|134055944|emb|CAK37421.1| unnamed protein product [Aspergillus niger]
gi|350638781|gb|EHA27137.1| hypothetical protein ASPNIDRAFT_46267 [Aspergillus niger ATCC 1015]
Length = 570
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 40 NSNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N +P R+YVG+I F + E ++ F PFG ++ + + D T + +G+ FV++ P
Sbjct: 273 NHAAPFHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQ 331
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A+ +LE+MNG L GR I+V + + SN + QS
Sbjct: 332 AREALEKMNGFDLAGRAIRVGLGNDKFTPDSNAQRMQS 369
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++V ++ L+ + F GP+K + D ++ + KG +VE+ ++ ++ Q+
Sbjct: 182 IFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKSEDSVAPAI-QL 240
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G L G I + R + P+A S A ++R+YV +IH +TE D++
Sbjct: 241 TGQKLLGIPIIAQLTEAEKNRQARNPEASSG----NNHAAPFHRLYVGNIHFSITESDLQ 296
>gi|392404677|ref|YP_006441289.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390612631|gb|AFM13783.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 141
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++++ ++ +R AF FG + S+ + D T + +GFAFVE + E AQ ++
Sbjct: 1 MNIYVGNLAYNATDEELRSAFEAFGQVTSVKIVRDRDTGRSRGFAFVEMEDGEGAQNAVA 60
Query: 105 QMNGVMLGGRNIKVH 119
+MNG L GRN+ V+
Sbjct: 61 EMNGKDLKGRNLVVN 75
>gi|330794131|ref|XP_003285134.1| hypothetical protein DICPUDRAFT_76077 [Dictyostelium purpureum]
gi|325084960|gb|EGC38377.1| hypothetical protein DICPUDRAFT_76077 [Dictyostelium purpureum]
Length = 116
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N N +YVG + + D +R AF+PFG I IN+ D TQK KGF FVE+++PE A
Sbjct: 4 NVNKKNVIYVGGLDENVTTDILRGAFIPFGNITDINLPIDYKTQKSKGFGFVEFELPEDA 63
Query: 100 QLSLEQMNGVMLGGR 114
+L+ M+ + G+
Sbjct: 64 ADALDNMHESEIYGK 78
>gi|222623613|gb|EEE57745.1| hypothetical protein OsJ_08262 [Oryza sativa Japonica Group]
Length = 369
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 27/131 (20%)
Query: 10 CCIVVTKCTYPFLSTPLYDLKQVGPITPDVNSNSP----------------------LRV 47
CC + +C + L D+ V + PD N S R+
Sbjct: 213 CCHIDEEC-----AKELADVSGVLSVQPDTNFGSDNKNYKGDDSFKSSEATQAEVKTKRL 267
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107
+V +SF E T+R AF PFG + + + D I+++ KG+AF+EY EA +L+ MN
Sbjct: 268 FVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMN 327
Query: 108 GVMLGGRNIKV 118
G ++ G I V
Sbjct: 328 GQIINGWMIVV 338
>gi|168001864|ref|XP_001753634.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695041|gb|EDQ81386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 168
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+ +N +YVG + + E + AF+PFG +K I+M D TQKH+GFAF+ Y E
Sbjct: 1 MGTNPKTTLYVGGLEENVTEQVVHAAFIPFGDVKDISMPLDQATQKHRGFAFITYFEKED 60
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQ 124
A +++ M+ L GR + V++ Q
Sbjct: 61 AAAAMDNMHNGELYGRVLTVNYAQPQ 86
>gi|115448473|ref|NP_001048016.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|46390469|dbj|BAD15930.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|46390865|dbj|BAD16369.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113537547|dbj|BAF09930.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|218191513|gb|EEC73940.1| hypothetical protein OsI_08808 [Oryza sativa Indica Group]
Length = 399
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 27/131 (20%)
Query: 10 CCIVVTKCTYPFLSTPLYDLKQVGPITPDVNSNSP----------------------LRV 47
CC + +C + L D+ V + PD N S R+
Sbjct: 243 CCHIDEEC-----AKELADVSGVLSVQPDTNFGSDNKNYKGDDSFKSSEATQAEVKTKRL 297
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107
+V +SF E T+R AF PFG + + + D I+++ KG+AF+EY EA +L+ MN
Sbjct: 298 FVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMN 357
Query: 108 GVMLGGRNIKV 118
G ++ G I V
Sbjct: 358 GQIINGWMIVV 368
>gi|417409425|gb|JAA51218.1| Putative cyclophilin-type peptidyl-prolyl cis-trans isomerase,
partial [Desmodus rotundus]
Length = 294
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y G ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 1 IYGGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 60
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 61 NESELFGRTIRVNL 74
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G++SF + ED IR++F +G + S+ D T KGF +VEY E AQ ++E +
Sbjct: 283 LFLGNLSFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAVEGL 342
Query: 107 NGVMLGGRNIKVHF 120
NGV + GR++++ +
Sbjct: 343 NGVEIAGRSLRLDY 356
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+VG++S+ + E+ + F G ++S + D T + KGF +V ++ +A ++ +
Sbjct: 185 VFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTFESADALTAAM-AL 243
Query: 107 NGVMLGGRNIKVH 119
G L GR I+V
Sbjct: 244 TGTELDGREIRVD 256
>gi|410898649|ref|XP_003962810.1| PREDICTED: transformer-2 protein homolog beta-like [Takifugu
rubripes]
Length = 277
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 52 ISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML 111
+S E +R+ F +GP+ +N+ +D +++ +GFAFV ++ E ++ + E NG+ L
Sbjct: 121 LSLYTTERDLREVFSKYGPLADVNIVYDQQSRRSRGFAFVYFETSEDSKEAKEHANGMEL 180
Query: 112 GGRNIKVHF----------PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDL 160
GR I+V F P + +GRP+ QS D + Y+R Y D
Sbjct: 181 DGRRIRVDFSITKRAHTPTPGIYMGRPTYGSSRQSSRDYYKGYDRGYDRGYDRGYDRDY 239
>gi|392579826|gb|EIW72953.1| hypothetical protein TREMEDRAFT_72942 [Tremella mesenterica DSM
1558]
Length = 475
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D S +Y+G +S++L ED + +AF FG I+ +++ D T KGF +VE+ +
Sbjct: 304 DQRSAPAATLYLGGLSYDLNEDAVYEAFGDFGDIQRVSLPTDRETGAPKGFGYVEFADVD 363
Query: 98 AAQLSLEQMNGVMLGGRNIKVHF 120
A +LE MNG L GR I+V +
Sbjct: 364 QATAALEAMNGKELSGRRIRVDY 386
>gi|341889641|gb|EGT45576.1| hypothetical protein CAEBREN_06918 [Caenorhabditis brenneri]
Length = 348
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N S V+VG+IS+++ EDTIR F GP+ SI M D T K KG+ F+E+ + A
Sbjct: 12 NERSQRSVFVGNISYDVTEDTIRAMFSKAGPVMSIKMVHDRETGKPKGYGFIEFPDIQTA 71
Query: 100 QLSLEQMNGVMLGGRNIKV 118
++ +NG LGGR ++V
Sbjct: 72 DTAIRVLNGHELGGRILRV 90
>gi|17508567|ref|NP_493029.1| Protein R06C1.4 [Caenorhabditis elegans]
gi|3878851|emb|CAB03222.1| Protein R06C1.4 [Caenorhabditis elegans]
Length = 84
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG++ ++ E+ I F G + ++ + +D T + +GFAFVE+ AQ ++EQ+
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 107 NGVMLGGRNIKVHFPH 122
NGV GRN++V++ +
Sbjct: 68 NGVAFNGRNLRVNYAN 83
>gi|345870896|ref|ZP_08822845.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
gi|343921050|gb|EGV31774.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
Length = 90
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S+ + +R+AF PFG + +N+ D T + KGF FVE A +++
Sbjct: 1 MNIYVGNLSYNTTDSDLREAFAPFGEVAQVNLISDKFTGQSKGFGFVEMPNNSHADAAIK 60
Query: 105 QMNGVMLGGRNIKVH 119
+NG L GR+IKV+
Sbjct: 61 GLNGTDLQGRSIKVN 75
>gi|268569444|ref|XP_002640524.1| Hypothetical protein CBG18686 [Caenorhabditis briggsae]
Length = 84
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 49/76 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG++ +++ E+ I Q F G + ++ + +D T + +GFAFVE+ AQ ++EQ+
Sbjct: 8 VYVGNVPYQVSEEEIGQWFSSVGVVNNVRIVFDRETGRPRGFAFVEFTDEAGAQRAVEQL 67
Query: 107 NGVMLGGRNIKVHFPH 122
NG GRN++V++ +
Sbjct: 68 NGASFNGRNLRVNYAN 83
>gi|157115630|ref|XP_001658271.1| peptidyl-prolyl cis-trans isomerase e, ppie [Aedes aegypti]
gi|108876827|gb|EAT41052.1| AAEL007273-PA [Aedes aegypti]
Length = 303
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN VYVG +S E+ E I AF+PFG + I M D +QKH+GFAF+E++ E A
Sbjct: 2 SNDKRTVYVGGLSDEVTEKLINDAFIPFGDLVDIQMPVDYESQKHRGFAFIEFESAEDAA 61
Query: 101 LSLEQMN 107
+++ MN
Sbjct: 62 AAVDNMN 68
>gi|47086779|ref|NP_997793.1| cytotoxic granule-associated RNA binding protein 1 [Danio rerio]
gi|28279551|gb|AAH45368.1| Cytotoxic granule-associated RNA binding protein 1 [Danio rerio]
Length = 386
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ D IR AF PFG I + D T K KG+ FV +
Sbjct: 85 PSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSF 144
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS---VIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + + DE+ ++ N
Sbjct: 145 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNC 204
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 205 TVYCGGVTTGLTEQLMR 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ P +YVG++S ++ E I Q F GP KS M D T + + FVE+
Sbjct: 2 MDDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRH 59
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A SL MNG + G+ +KV++ + P +Q ++ + ++V + P
Sbjct: 60 AAASLAAMNGRKIMGKEVKVNW--------ATSPSSQK------KDTSNHFHVFVGDLSP 105
Query: 159 DLTEEDIK 166
++T +DI+
Sbjct: 106 EITTDDIR 113
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I + + D KG++FV ++
Sbjct: 196 VNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD------KGYSFVRFNSH 249
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG L G +K ++
Sbjct: 250 ESAAHAIVSVNGTSLEGHIVKCYW 273
>gi|221220658|gb|ACM08990.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|304376965|gb|ACI70202.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 161
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ +AF +G I ++ D T + +GF FV+YD PE A+ +++
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDA 65
Query: 106 MNGVMLGGRNIKVH 119
MNG L GR I+V+
Sbjct: 66 MNGQSLDGRTIRVN 79
>gi|198285593|gb|ACH85335.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219546|gb|ACM08434.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 160
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ +AF +G I ++ D T + +GF FV+YD PE A+ +++
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDA 65
Query: 106 MNGVMLGGRNIKVH 119
MNG L GR I+V+
Sbjct: 66 MNGQSLDGRTIRVN 79
>gi|209734900|gb|ACI68319.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|303657347|gb|ADM15872.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 114
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ +AF +G I ++ D T + +GF FV+YD PE A+ +++
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDA 65
Query: 106 MNGVMLGGRNIKVH 119
MNG L GR I+V+
Sbjct: 66 MNGQSLDGRTIRVN 79
>gi|213513270|ref|NP_001133190.1| hyperosmotic glycine rich protein [Salmo salar]
gi|197632401|gb|ACH70924.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 126
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ +AF +G I ++ D T + +GF FV+YD PE A+ +++
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDA 65
Query: 106 MNGVMLGGRNIKVH 119
MNG L GR I+V+
Sbjct: 66 MNGQSLDGRTIRVN 79
>gi|157114083|ref|XP_001657973.1| nucleolysin tia-1 [Aedes aegypti]
gi|108877443|gb|EAT41668.1| AAEL006710-PA [Aedes aegypti]
Length = 453
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++ ++VG +S E++ +T+R+AF PFG I + + DP T K +G+AFV +
Sbjct: 88 PKTDTSQHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG LG R+I+ ++
Sbjct: 148 AEAENAIQMMNGQWLGSRSIRTNW 171
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 24/127 (18%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINM----SWDPITQKHKGFAFVEYDIPEAA 99
P +YVG++ + ED + F G +KS + S DP +AF+EY ++A
Sbjct: 7 PKTLYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSDP-------YAFIEYANHQSA 59
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
Q +L MN + + IKV++ P N P+ + ++ I+V + P+
Sbjct: 60 QTALAAMNKRLFLKKEIKVNW----ATSPGNQPKT---------DTSQHHHIFVGDLSPE 106
Query: 160 LTEEDIK 166
+ E ++
Sbjct: 107 IETETLR 113
>gi|167540183|ref|XP_001741597.1| U2 snRNP component IST3 [Entamoeba dispar SAW760]
gi|165893807|gb|EDR21934.1| U2 snRNP component IST3, putative [Entamoeba dispar SAW760]
Length = 135
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G I+ EL E I F FG + INM W+ +HKGF F++Y P + L+++
Sbjct: 39 IYIGGIANELNEGDIIIVFSQFGEVIDINMPWNNDEDEHKGFCFLKYKDPRSCVLAIDNF 98
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQA 134
NG+ L GR + V H + N+ Q
Sbjct: 99 NGIELNGRRLTV--DHSESQEQKNIDQT 124
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
V+VG +S E+ +R+AFL FG + + D T K KG+ FV Y E A+ ++E
Sbjct: 128 FHVFVGDLSSEVDSTKLREAFLAFGDVSEAKIIRDTATNKAKGYGFVSYPRREDAERAIE 187
Query: 105 QMNGVMLGGRNIKVHF 120
QMNG LG R I+ ++
Sbjct: 188 QMNGQWLGRRTIRTNW 203
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG I+ +L ED IR+AF FGPI + M K +G+AFV+++ EAA ++ QM
Sbjct: 246 VYVGQIN-QLTEDEIRRAFDRFGPINEVRMF------KVQGYAFVKFEQKEAAARAIVQM 298
Query: 107 NGVMLGGRNIK 117
N + G+ ++
Sbjct: 299 NNAEIQGQQVR 309
>gi|241951780|ref|XP_002418612.1| RNA binding protein, putative; spliceosome associated protein,
putative [Candida dubliniensis CD36]
gi|223641951|emb|CAX43915.1| RNA binding protein, putative [Candida dubliniensis CD36]
Length = 259
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D + N +Y G+I ++ E + + F+ FGPIKSINM D I + H+G+ FVE+
Sbjct: 10 DSDRNIEASLYFGNIDPQVTELLMYELFIQFGPIKSINMPKDRILKTHQGYGFVEFKNSA 69
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
A+ +++ + GV L G+ +K+ + P+N Q++
Sbjct: 70 DAKYTMDILRGVRLYGKALKLKRIDAKSSAPTNSTNNQTI 109
>gi|167391953|ref|XP_001739964.1| nucleolysin TIAR [Entamoeba dispar SAW760]
gi|165896141|gb|EDR23641.1| nucleolysin TIAR, putative [Entamoeba dispar SAW760]
Length = 306
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 28 DLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
+LK T + +++VG + E+ +D + + F FG + + T K KG
Sbjct: 112 ELKVNWSYTAQQENQGSYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKG 171
Query: 88 FAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
+ FV + E A+ +++ MNG L GRNIKV++ + + P+ DEI E +
Sbjct: 172 YGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQPKRS--YDEINNETSI 229
Query: 148 YN-RIYVASIHPDLTEEDIK 166
N +Y+ +I ++ +D+K
Sbjct: 230 QNCTVYIGNIPKNVESDDLK 249
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY+G+I ++ D ++Q +G I+ + ++ K KG+AF+++ E+A ++
Sbjct: 234 VYIGNIPKNVESDDLKQLLAEYGSIEEVRLN------KDKGYAFIKFSKHESATSAILMC 287
Query: 107 NGVMLGGRNIK 117
NG ++ G ++
Sbjct: 288 NGKIINGSTLR 298
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
PI + NS S V+V I + E + + F G + S + D + H G+ FVE+
Sbjct: 35 PIPINANSKS---VHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDK-SGTHAGYGFVEF 90
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123
A+ + + M+G ++ GR +KV++ +
Sbjct: 91 VDSTTARFAKDNMDGRVVYGRELKVNWSYT 120
>gi|194742700|ref|XP_001953839.1| GF17967 [Drosophila ananassae]
gi|190626876|gb|EDV42400.1| GF17967 [Drosophila ananassae]
Length = 471
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ ++ MNG +G R+I+ ++
Sbjct: 147 AEAENAITAMNGQWIGSRSIRTNW 170
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F G +KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGHVKSCKIIREP---GNDPYAFIEYSTYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ + ++ I+V + P
Sbjct: 58 ATTALTAMNKRLFLDKEIKVNW----ATSPGNQPKT---------DISSHHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 40 NSNSPLR--VYVGSISFE-LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
N +SP VY G + +D + + F+ FGPI+ + + K KGFAF+++
Sbjct: 215 NQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVF------KDKGFAFIKFVTK 268
Query: 97 EAAQLSLEQMNGVMLGGRNIK 117
EAA ++E + + G +K
Sbjct: 269 EAAARAIEHTHNSEVHGNQVK 289
>gi|261855638|ref|YP_003262921.1| RNP-1 like RNA-binding protein [Halothiobacillus neapolitanus c2]
gi|261836107|gb|ACX95874.1| RNP-1 like RNA-binding protein [Halothiobacillus neapolitanus c2]
Length = 98
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S++ + +R AF FG +KS + D T + KGFAFVE A ++E
Sbjct: 2 INIYVGNLSYQSGDADVRSAFEAFGEVKSAKVIQDMATGRSKGFAFVEMADKAAGMTAIE 61
Query: 105 QMNGVMLGGRNIKVH 119
Q++ L GRNI+V+
Sbjct: 62 QLDNTDLNGRNIRVN 76
>gi|238883601|gb|EEQ47239.1| hypothetical protein CAWG_05803 [Candida albicans WO-1]
Length = 259
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D + N +Y G+I ++ E + + F+ FGP+KSINM D I + H+G+ FVE+
Sbjct: 10 DSDRNIDASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSA 69
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
A+ ++E + G+ L G+ +K+ + +N P Q++
Sbjct: 70 DAKYTMEILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTI 109
>gi|68482438|ref|XP_714851.1| likely U2-associated splicing factor [Candida albicans SC5314]
gi|68482559|ref|XP_714789.1| likely U2-associated splicing factor [Candida albicans SC5314]
gi|46436383|gb|EAK95746.1| likely U2-associated splicing factor [Candida albicans SC5314]
gi|46436448|gb|EAK95810.1| likely U2-associated splicing factor [Candida albicans SC5314]
Length = 259
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D + N +Y G+I ++ E + + F+ FGP+KSINM D I + H+G+ FVE+
Sbjct: 10 DSDRNIDASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSA 69
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
A+ ++E + G+ L G+ +K+ + +N P Q++
Sbjct: 70 DAKYTMEILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTI 109
>gi|255568010|ref|XP_002524982.1| RNA binding protein, putative [Ricinus communis]
gi|223535726|gb|EEF37389.1| RNA binding protein, putative [Ricinus communis]
Length = 371
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 10 CCIVVTKCTYPFLSTPLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFG 69
CC + +C P V + D N S + Y G +SF E T+R AF FG
Sbjct: 250 CCELDEECAQELAGVP-----GVLSVQLDKNFESENKDYEG-LSFYTSEKTLRAAFEGFG 303
Query: 70 PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ + + D I+++ KG+AF+EY EAA +L++MNG ++ G I V
Sbjct: 304 ELVEVKIIMDKISKRSKGYAFIEYTTEEAANAALKEMNGKIINGWMIVV 352
>gi|410929559|ref|XP_003978167.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Takifugu rubripes]
Length = 385
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + +++S V+VG +S E+ D I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFGPFGKISDCRVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ---VGRPSNMPQAQSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTTNETTNTKQLSFDEVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTTGLTEQIMR 220
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ P +YVG++S ++ E I + F GP KS M D T H + FVE+
Sbjct: 1 MDDEQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVD--TAGHDPYCFVEFYEHRH 58
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A ++ MNG + G+ +KV++ + P +Q ++ + ++V + P
Sbjct: 59 ATATIAAMNGRKILGKEVKVNW--------ATTPTSQK------KDTSSHFHVFVGDLSP 104
Query: 159 DLTEEDIK 166
++T +DIK
Sbjct: 105 EITTDDIK 112
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTTGLTEQIMRQTFSPFGHIMEIRVFPD------KGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
EAA ++ +NG + G +K ++
Sbjct: 249 EAAAHAIVSVNGTTIEGYVVKCYW 272
>gi|242037019|ref|XP_002465904.1| hypothetical protein SORBIDRAFT_01g047890 [Sorghum bicolor]
gi|241919758|gb|EER92902.1| hypothetical protein SORBIDRAFT_01g047890 [Sorghum bicolor]
Length = 240
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I F E +R A GP++S+ ++ DP T K +G+AFVEY E A+ + +
Sbjct: 21 VYVGNIPFHASEKEVRDACELIGPVRSLRLAADPGTGKRRGYAFVEYPDDETARSACRNL 80
Query: 107 NGVMLGGRNIKV 118
+G L GR ++V
Sbjct: 81 HGHALRGRELRV 92
>gi|119485430|ref|ZP_01619758.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
gi|119457186|gb|EAW38312.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
Length = 100
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ VYVG++S+++ E+ +R F +G +K +++ D T + +GFAFVE D Q ++E
Sbjct: 1 MSVYVGNLSYQVTEEDLRSVFAEYGTVKQVSIPTDRETGRPRGFAFVEMDADTQEQAAIE 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPSNMPQA 134
+++G GR++KV+ + R S+ Q
Sbjct: 61 KLDGAEWMGRDLKVNKARPREDRGSSFGQG 90
>gi|413938711|gb|AFW73262.1| chloroplast protein synthesis 4 [Zea mays]
Length = 400
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R++V +SF E T+R AF PFG + + + D I+++ KG+AFVEY EA +L+
Sbjct: 302 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 361
Query: 106 MNGVMLGG 113
MNG ++ G
Sbjct: 362 MNGQIING 369
>gi|7270986|emb|CAB77630.1| spliceosome-associated essential protein [Candida albicans]
Length = 257
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D + N +Y G+I ++ E + + F+ FGP+KSINM D I + H+G+ FVE+
Sbjct: 8 DSDRNIDASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSA 67
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
A+ ++E + G+ L G+ +K+ + +N P Q++
Sbjct: 68 DAKYTMEILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTI 107
>gi|324514401|gb|ADY45855.1| Cleavage stimulation factor subunit 2 [Ascaris suum]
Length = 324
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+VG+IS+E+ E+ ++Q F GP+ + + D T K KG+ F EY+ P+ A+ ++ +
Sbjct: 25 VFVGNISYEVGEEQLKQVFSQVGPVVHLRLVHDRETGKPKGYGFCEYNDPQTAESAIRNL 84
Query: 107 NGVMLGGRNIKV 118
NG L GR ++V
Sbjct: 85 NGYELNGRQLRV 96
>gi|291288414|ref|YP_003505230.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
gi|290885574|gb|ADD69274.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
Length = 94
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S++ ED IR F FG + S+ + D T + KGF FVE + E A+ ++E
Sbjct: 1 MNIYVGNLSYKAMEDEIRDMFQSFGDVASVRIITDHETGRSKGFGFVEMEDDEQAKAAIE 60
Query: 105 QMNGVMLGGRNIKVH 119
++NGV + GR + V+
Sbjct: 61 ELNGVEMLGRPLTVN 75
>gi|259490527|ref|NP_001159310.1| uncharacterized protein LOC100304402 [Zea mays]
gi|223943329|gb|ACN25748.1| unknown [Zea mays]
gi|413938710|gb|AFW73261.1| chloroplast protein synthesis 4 [Zea mays]
Length = 398
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R++V +SF E T+R AF PFG + + + D I+++ KG+AFVEY EA +L+
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359
Query: 106 MNGVMLGG 113
MNG ++ G
Sbjct: 360 MNGQIING 367
>gi|168038795|ref|XP_001771885.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676836|gb|EDQ63314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 157
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 49/79 (62%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++++G +++ E+T+R AF FG + + + D T + +GF FV + P+ A+++
Sbjct: 43 SSSKLFIGGLAWATDENTLRDAFGSFGTVTDVKIILDRDTGRSRGFGFVNFTSPQEAEVA 102
Query: 103 LEQMNGVMLGGRNIKVHFP 121
L++M+G L GR I+V +
Sbjct: 103 LQEMDGRELAGRQIRVDYA 121
>gi|448123237|ref|XP_004204643.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|448125519|ref|XP_004205201.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358249834|emb|CCE72900.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358350182|emb|CCE73461.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
Length = 505
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 20 PFLSTPLYD-LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSW 78
P S P +D KQ G DV S +++G++SF + D + F +G + S M
Sbjct: 371 PRPSNPRFDRAKQFG----DVPSAPSSTLFIGNLSFNAQRDNLYDIFGEYGRVVSCRMPT 426
Query: 79 DPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF--PHVQVGRPSNMPQAQ 135
P TQ+ KGF ++E+ + A+ +LE +NG + GR ++ F P RPS PQ +
Sbjct: 427 HPDTQQPKGFGYIEFSTVDEAKAALEALNGEYVEGRPCRLDFSTPRENSNRPSPRPQGR 485
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P ++VG +S+ + ++ +++ F P G + + ++ + K +G+ +V+++ AQ +L
Sbjct: 290 PATLFVGRLSWNIDDEWLQREFEPLGGVTGARVIYEKASGKSRGYGYVDFETKSQAQHAL 349
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSN 130
++ G + GR I + + RPSN
Sbjct: 350 KEYQGREIDGRPINLDMSESK-PRPSN 375
>gi|303248437|ref|ZP_07334696.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
gi|302490148|gb|EFL50067.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
Length = 96
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++ F ED IR F +G ++S+N+ D T + +GF FVE PE A ++E
Sbjct: 4 KLYVGNLPFSTNEDEIRNLFAAYGDVESVNLIVDRETGRLRGFGFVEMS-PEGADAAMEA 62
Query: 106 MNGVMLGGRNIKVH 119
++G GGR+++V+
Sbjct: 63 LDGKAFGGRDLRVN 76
>gi|221048043|gb|ACL98129.1| hyperosmotic glycine rich protein [Epinephelus coioides]
Length = 175
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SFE E+++ AF +G I+ +++ D T + +GF FV+YD + A+ +LE
Sbjct: 6 KLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNCDDAKDALEG 65
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 66 MNGKTLDGRAIRV 78
>gi|156377813|ref|XP_001630840.1| predicted protein [Nematostella vectensis]
gi|156217869|gb|EDO38777.1| predicted protein [Nematostella vectensis]
Length = 298
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
YVG ++ E+ E + AF+PFG I + + D T KH+GF FVE++ E +++ M
Sbjct: 7 AYVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNM 66
Query: 107 NGVMLGGRNIKVHFP 121
N L GR I+V+
Sbjct: 67 NESELFGRTIRVNLA 81
>gi|167383625|ref|XP_001736605.1| cold-inducible RNA-binding protein [Entamoeba dispar SAW760]
gi|165900936|gb|EDR27150.1| cold-inducible RNA-binding protein, putative [Entamoeba dispar
SAW760]
Length = 138
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+GS+++ + ++++R AF FG + + D +Q+ KGF FV ++ E A+ ++E+
Sbjct: 3 RLYIGSLAYSVTDESLRAAFEKFGTVTDCKVVTDRESQRSKGFGFVTFEKDEDAKKAIEE 62
Query: 106 MNGVMLGGRNIKV 118
MN L GR IKV
Sbjct: 63 MNEQELEGRRIKV 75
>gi|321259451|ref|XP_003194446.1| hypothetical protein CGB_E5340C [Cryptococcus gattii WM276]
gi|317460917|gb|ADV22659.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 615
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 7/104 (6%)
Query: 19 YPFLSTPLYDLKQVGPITPDVNSNSPL---RVYVGSISFELKEDTIRQAFLPFGPIKSIN 75
YP LST L +G + PD + ++ + R++V +++F L D +RQ F PFG I+ ++
Sbjct: 359 YPPLSTGL--ALPLG-LDPDAHKDAAIPYHRLFVSNLAFSLTADDVRQVFEPFGEIEFVD 415
Query: 76 MSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119
+ DP + KG A+V++ ++AQ++L+ M G L GR IKV
Sbjct: 416 LHMDP-SGLRKGTAYVQFKDVKSAQMALDAMAGFDLAGRLIKVQ 458
>gi|170589631|ref|XP_001899577.1| RNA recognition motif. [Brugia malayi]
gi|158593790|gb|EDP32385.1| RNA recognition motif [Brugia malayi]
Length = 287
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 26/152 (17%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSI--------------------- 74
+P V+++ V+VG +S E+ T++ AF FG I S+
Sbjct: 76 SPKVDTSKNYHVFVGDLSTEVNNCTLKAAFESFGEISSVFRPSYNLPLYTLASLSCFSEA 135
Query: 75 NMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA 134
+ DP T K KG+ FV + + E AQ ++E+MNG M+G R I+ ++ R + +
Sbjct: 136 KVIRDPQTLKSKGYGFVSFPVKENAQKAIEEMNGQMIGRRQIRTNW----AVRKFDGGEE 191
Query: 135 QSVIDEITEEAKLYN-RIYVASIHPDLTEEDI 165
D I N +YV I P T+E++
Sbjct: 192 NVTYDNIFNATHAANTSVYVGGISPITTDEEL 223
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG IS ++ + Q+F + + + K +G+AFV Y +AA ++ M
Sbjct: 209 VYVGGISPITTDEELMQSFSAIATVIEVRLF------KQQGYAFVRYLNKDAAARAIMSM 262
Query: 107 NGVMLGGRNIK 117
NG ++ G+ I+
Sbjct: 263 NGKVINGQKIR 273
>gi|66806147|ref|XP_636795.1| hypothetical protein DDB_G0288291 [Dictyostelium discoideum AX4]
gi|60465191|gb|EAL63288.1| hypothetical protein DDB_G0288291 [Dictyostelium discoideum AX4]
Length = 123
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
+T VN + L YVG IS ++ D +R AF+PFG I + + D TQK KGF F++++
Sbjct: 7 LTKGVNKKNVL--YVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFE 64
Query: 95 IPEAAQLSLEQMNGVMLGGRNIK 117
+PE A +L+ M+ + GR IK
Sbjct: 65 LPEDAADALDNMHESEIFGRVIK 87
>gi|238231621|ref|NP_001153996.1| peptidyl-prolyl cis-trans isomerase E [Oncorhynchus mykiss]
gi|225703282|gb|ACO07487.1| Peptidyl-prolyl cis-trans isomerase E [Oncorhynchus mykiss]
Length = 302
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG + I + D T+KH+GFAF+E+++ E A +++ M
Sbjct: 8 LYVGGLTEEVDEKVLHAAFIPFGDVTDIQIPIDYETEKHRGFAFIEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
N L G I+V+ + +P + + S
Sbjct: 68 NESELFGGTIRVN-----IAKPMRIKEGSS 92
>gi|47217530|emb|CAG02457.1| unnamed protein product [Tetraodon nigroviridis]
Length = 418
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ D ++ AF PFG I + D T K KG+ FV +
Sbjct: 89 PTSQKKDTSNHFHVFVGDLSPEITTDDVKAAFGPFGRISDARVVKDMATGKSKGYGFVSF 148
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS---VIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P ++ S D++ ++ N
Sbjct: 149 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKTTYESNSKQLCFDDVVNQSSPSNC 208
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 209 TVYCGGVSTGLTEQLMR 225
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G +S L E +RQ F PFGPI I + D KG++FV ++
Sbjct: 200 VNQSSPSNCTVYCGGVSTGLTEQLMRQTFSPFGPIMEIRVFPD------KGYSFVRFNSH 253
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 254 ESAAHAIVSVNGSSIEGHVVKCYW 277
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107
YVG++S ++ E I Q F GP KS M D T + + FVE+ A SL MN
Sbjct: 15 YVGNLSRDVTEPLILQVFTQIGPCKSCKMIVD--TAGNDPYCFVEFYEHRHAAASLAAMN 72
Query: 108 GVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G + G+ +KV++ + P +Q ++ + ++V + P++T +D+K
Sbjct: 73 GRKIMGKEVKVNW--------ATTPTSQK------KDTSNHFHVFVGDLSPEITTDDVK 117
>gi|449267712|gb|EMC78625.1| Nucleolysin TIA-1 isoform p40, partial [Columba livia]
Length = 361
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 75 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 134
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + +A Q DE+ ++ N
Sbjct: 135 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYEANTKQLSYDEVVNQSSPSNC 194
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 195 TVYCGGVTSGLTEQLMR 211
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 186 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 239
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 240 ESAAHAIVSVNGTTIEGHIVKCYW 263
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107
YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L MN
Sbjct: 1 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMN 58
Query: 108 GVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G + G+ +KV++ + P +Q ++ + ++V + P++T EDIK
Sbjct: 59 GRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTEDIK 103
>gi|387193280|gb|AFJ68695.1| splicing factor U2AF 65 kDa subunit [Nannochloropsis gaditana
CCMP526]
Length = 424
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 29 LKQVGPITPDVNS--NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHK 86
+ G P NS +SP +++VG + + + +D +R+ FGP++ ++ DP T K
Sbjct: 205 MASTGLTAPGANSVPDSPYKIFVGGLPYHVTDDQVRELLSAFGPLRGFDLKKDPATGMSK 264
Query: 87 GFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
G+ F EY ++++ ++G+ LGG+ + V +
Sbjct: 265 GYGFCEYIDHAVGDVAIQGLHGMDLGGKTLTVKY 298
>gi|212531765|ref|XP_002146039.1| RNA splicing factor (Pad-1), putative [Talaromyces marneffei ATCC
18224]
gi|210071403|gb|EEA25492.1| RNA splicing factor (Pad-1), putative [Talaromyces marneffei ATCC
18224]
Length = 562
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 40 NSNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++++P R+YVG+I F + E+ I+ F PFG ++ + + D T + +G+ FV++ P
Sbjct: 262 SASAPFHRLYVGNIHFSITENDIQNVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQ 320
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ +LE+MNG L GR I+V
Sbjct: 321 AREALEKMNGFDLAGRPIRV 340
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 36 TPDVNSNSPLR----VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFV 91
TP+ N R V+V ++ L+ + F GP+K + D ++ + KG +V
Sbjct: 156 TPEEELNEDERDKRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYV 215
Query: 92 EYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRI 151
E+ + L++ Q+ G L G I + R + P+A S + ++R+
Sbjct: 216 EFKDESSVPLAI-QLTGQKLLGIPIIAQLTEAEKNRQARNPEASSG----QSASAPFHRL 270
Query: 152 YVASIHPDLTEEDIK 166
YV +IH +TE DI+
Sbjct: 271 YVGNIHFSITENDIQ 285
>gi|24214620|ref|NP_712101.1| RNA-binding protein [Leptospira interrogans serovar Lai str. 56601]
gi|45657838|ref|YP_001924.1| RNA-binding protein [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|116328465|ref|YP_798185.1| RNA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116331197|ref|YP_800915.1| RNA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|359685806|ref|ZP_09255807.1| RNA-binding protein [Leptospira santarosai str. 2000030832]
gi|359726906|ref|ZP_09265602.1| RNA-binding protein [Leptospira weilii str. 2006001855]
gi|386074008|ref|YP_005988325.1| RNA-binding protein [Leptospira interrogans serovar Lai str. IPAV]
gi|398332637|ref|ZP_10517342.1| RNA-binding protein [Leptospira alexanderi serovar Manhao 3 str. L
60]
gi|410450551|ref|ZP_11304588.1| hypothetical protein LEP1GSC068_2887 [Leptospira sp. Fiocruz
LV3954]
gi|417760452|ref|ZP_12408475.1| hypothetical protein LEP1GSC027_0555 [Leptospira interrogans str.
2002000624]
gi|417765544|ref|ZP_12413504.1| hypothetical protein LEP1GSC007_1775 [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417775540|ref|ZP_12423393.1| hypothetical protein LEP1GSC025_3203 [Leptospira interrogans str.
2002000621]
gi|417781669|ref|ZP_12429418.1| hypothetical protein LEP1GSC036_2522 [Leptospira weilii str.
2006001853]
gi|417783687|ref|ZP_12431403.1| hypothetical protein LEP1GSC077_2793 [Leptospira interrogans str.
C10069]
gi|418668620|ref|ZP_13230020.1| hypothetical protein LEP1GSC019_3521 [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|418672853|ref|ZP_13234186.1| hypothetical protein LEP1GSC026_0628 [Leptospira interrogans str.
2002000623]
gi|418684012|ref|ZP_13245203.1| hypothetical protein LEP1GSC045_1894 [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418693004|ref|ZP_13254073.1| hypothetical protein LEP1GSC080_1903 [Leptospira interrogans str.
FPW2026]
gi|418696158|ref|ZP_13257167.1| hypothetical protein LEP1GSC081_1448 [Leptospira kirschneri str.
H1]
gi|418699596|ref|ZP_13260554.1| hypothetical protein LEP1GSC087_2628 [Leptospira interrogans
serovar Bataviae str. L1111]
gi|418704274|ref|ZP_13265152.1| hypothetical protein LEP1GSC096_2774 [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418710854|ref|ZP_13271620.1| hypothetical protein LEP1GSC097_1099 [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|418716814|ref|ZP_13276777.1| hypothetical protein LEP1GSC099_0521 [Leptospira interrogans str.
UI 08452]
gi|418719262|ref|ZP_13278462.1| hypothetical protein LEP1GSC101_3790 [Leptospira borgpetersenii
str. UI 09149]
gi|418726301|ref|ZP_13284912.1| hypothetical protein LEP1GSC104_2204 [Leptospira interrogans str.
UI 12621]
gi|418734639|ref|ZP_13291080.1| hypothetical protein LEP1GSC105_1904 [Leptospira interrogans str.
UI 12758]
gi|418739027|ref|ZP_13295420.1| hypothetical protein LEP1GSC121_3280 [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|418744825|ref|ZP_13301171.1| hypothetical protein LEP1GSC163_4293 [Leptospira santarosai str.
CBC379]
gi|418755775|ref|ZP_13311971.1| hypothetical protein LEP1GSC179_0669 [Leptospira santarosai str.
MOR084]
gi|421084617|ref|ZP_15545475.1| hypothetical protein LEP1GSC173_1895 [Leptospira santarosai str.
HAI1594]
gi|421094388|ref|ZP_15555106.1| hypothetical protein LEP1GSC128_0728 [Leptospira borgpetersenii
str. 200801926]
gi|421100627|ref|ZP_15561250.1| hypothetical protein LEP1GSC125_1674 [Leptospira borgpetersenii
str. 200901122]
gi|421103448|ref|ZP_15564047.1| hypothetical protein LEP1GSC117_3375 [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|421113326|ref|ZP_15573770.1| hypothetical protein LEP1GSC071_0300 [Leptospira santarosai str.
JET]
gi|421118783|ref|ZP_15579118.1| hypothetical protein LEP1GSC069_1297 [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|421119714|ref|ZP_15580032.1| hypothetical protein LEP1GSC057_2152 [Leptospira interrogans str.
Brem 329]
gi|421126199|ref|ZP_15586437.1| hypothetical protein LEP1GSC020_3724 [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421137268|ref|ZP_15597355.1| hypothetical protein LEP1GSC009_1749 [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|422004225|ref|ZP_16351446.1| RNA-binding protein [Leptospira santarosai serovar Shermani str. LT
821]
gi|24195595|gb|AAN49119.1|AE011365_5 RNA-binding protein [Leptospira interrogans serovar Lai str. 56601]
gi|45601078|gb|AAS70561.1| RNA-binding protein [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|116121209|gb|ABJ79252.1| RNA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116124886|gb|ABJ76157.1| RNA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|353457797|gb|AER02342.1| RNA-binding protein [Leptospira interrogans serovar Lai str. IPAV]
gi|400324233|gb|EJO76531.1| hypothetical protein LEP1GSC045_1894 [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400352243|gb|EJP04441.1| hypothetical protein LEP1GSC007_1775 [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|400357111|gb|EJP13258.1| hypothetical protein LEP1GSC080_1903 [Leptospira interrogans str.
FPW2026]
gi|409943682|gb|EKN89276.1| hypothetical protein LEP1GSC027_0555 [Leptospira interrogans str.
2002000624]
gi|409953074|gb|EKO07577.1| hypothetical protein LEP1GSC077_2793 [Leptospira interrogans str.
C10069]
gi|409955687|gb|EKO14619.1| hypothetical protein LEP1GSC081_1448 [Leptospira kirschneri str.
H1]
gi|409960211|gb|EKO23965.1| hypothetical protein LEP1GSC104_2204 [Leptospira interrogans str.
UI 12621]
gi|409963980|gb|EKO31880.1| hypothetical protein LEP1GSC179_0669 [Leptospira santarosai str.
MOR084]
gi|410009807|gb|EKO67963.1| hypothetical protein LEP1GSC069_1297 [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410015637|gb|EKO77732.1| hypothetical protein LEP1GSC068_2887 [Leptospira sp. Fiocruz
LV3954]
gi|410018482|gb|EKO85320.1| hypothetical protein LEP1GSC009_1749 [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410347480|gb|EKO98377.1| hypothetical protein LEP1GSC057_2152 [Leptospira interrogans str.
Brem 329]
gi|410362810|gb|EKP13845.1| hypothetical protein LEP1GSC128_0728 [Leptospira borgpetersenii
str. 200801926]
gi|410366693|gb|EKP22082.1| hypothetical protein LEP1GSC117_3375 [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410432901|gb|EKP77254.1| hypothetical protein LEP1GSC173_1895 [Leptospira santarosai str.
HAI1594]
gi|410436289|gb|EKP85407.1| hypothetical protein LEP1GSC020_3724 [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410574865|gb|EKQ37894.1| hypothetical protein LEP1GSC025_3203 [Leptospira interrogans str.
2002000621]
gi|410580163|gb|EKQ47991.1| hypothetical protein LEP1GSC026_0628 [Leptospira interrogans str.
2002000623]
gi|410744415|gb|EKQ93156.1| hypothetical protein LEP1GSC101_3790 [Leptospira borgpetersenii
str. UI 09149]
gi|410745725|gb|EKQ98635.1| hypothetical protein LEP1GSC121_3280 [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|410755352|gb|EKR16982.1| hypothetical protein LEP1GSC019_3521 [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|410761438|gb|EKR27618.1| hypothetical protein LEP1GSC087_2628 [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410766007|gb|EKR36696.1| hypothetical protein LEP1GSC096_2774 [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410768454|gb|EKR43701.1| hypothetical protein LEP1GSC097_1099 [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410772759|gb|EKR52798.1| hypothetical protein LEP1GSC105_1904 [Leptospira interrogans str.
UI 12758]
gi|410778400|gb|EKR63029.1| hypothetical protein LEP1GSC036_2522 [Leptospira weilii str.
2006001853]
gi|410787585|gb|EKR81317.1| hypothetical protein LEP1GSC099_0521 [Leptospira interrogans str.
UI 08452]
gi|410794311|gb|EKR92220.1| hypothetical protein LEP1GSC163_4293 [Leptospira santarosai str.
CBC379]
gi|410796430|gb|EKR98566.1| hypothetical protein LEP1GSC125_1674 [Leptospira borgpetersenii
str. 200901122]
gi|410801100|gb|EKS07274.1| hypothetical protein LEP1GSC071_0300 [Leptospira santarosai str.
JET]
gi|417257025|gb|EKT86432.1| RNA-binding protein [Leptospira santarosai serovar Shermani str. LT
821]
gi|455666044|gb|EMF31517.1| hypothetical protein LEP1GSC201_1675 [Leptospira interrogans
serovar Pomona str. Fox 32256]
gi|455791968|gb|EMF43753.1| hypothetical protein LEP1GSC067_3245 [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456821541|gb|EMF70047.1| hypothetical protein LEP1GSC148_0536 [Leptospira interrogans
serovar Canicola str. LT1962]
gi|456861145|gb|EMF79850.1| hypothetical protein LEP1GSC188_1846 [Leptospira weilii serovar
Topaz str. LT2116]
gi|456874070|gb|EMF89395.1| hypothetical protein LEP1GSC005_1881 [Leptospira santarosai str.
ST188]
gi|456887997|gb|EMF99005.1| hypothetical protein LEP1GSC123_3441 [Leptospira borgpetersenii
str. 200701203]
Length = 91
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +Y+G+++++ ED +R+AF FG + S+ + D ++ K +G AFVE E +++
Sbjct: 1 MNIYIGNLAYQATEDDLRKAFESFGEVTSVRIITDKLSGKSRGLAFVEMANKEEGNAAID 60
Query: 105 QMNGVMLGGRNIKVH 119
+NG + GR IKV+
Sbjct: 61 GLNGTQIRGREIKVN 75
>gi|20975278|dbj|BAB92956.1| cold inducible RNA-binding protein beta [Hyla japonica]
Length = 166
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++S+ +++VG +SF+ +E + Q F +G I + + D TQ+ +GF FV ++ PE
Sbjct: 1 MSSSDEGKLFVGGLSFDTEEQNLEQVFGKYGQISEVVVVKDRETQRSRGFGFVTFENPED 60
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ ++E MNG + GR I+V
Sbjct: 61 AKDAMEAMNGKSVDGRQIRV 80
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N+ S ++VG++S ++ + + QAF G + WD T + KGF FV + EAA
Sbjct: 89 NTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAA 148
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
+ +L +M+G +G I+ + H + + + ID + +YV ++ +
Sbjct: 149 EKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLD-----IDTVDRADPANTNVYVGNLPTE 203
Query: 160 LTEEDIK 166
+ EED++
Sbjct: 204 VMEEDLR 210
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++ + E ++ F G + + + D T G AFV+++ +AA ++L+ +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTE 162
NG +L + +++ + + E TE ++ I+V ++ D+ +
Sbjct: 67 NGRILYNKEVRIQWAFQK---------------EKTENTASHSHIFVGNLSGDVAD 107
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHK-GFAFVEYDIPEAAQLSLEQ 105
VYVG++ E+ E+ +R AF +G I + P HK G+ FV Y AA ++
Sbjct: 195 VYVGNLPTEVMEEDLRAAFGAYGEITGLK----PC---HKGGYGFVTYRDHSAAVQAIVG 247
Query: 106 MNGVMLGGRNIK 117
MNG L G+ +K
Sbjct: 248 MNGKELKGKMVK 259
>gi|226531406|ref|NP_001151901.1| ATP binding protein [Zea mays]
gi|195650797|gb|ACG44866.1| ATP binding protein [Zea mays]
gi|223948927|gb|ACN28547.1| unknown [Zea mays]
gi|414867508|tpg|DAA46065.1| TPA: ATP binding protein [Zea mays]
Length = 167
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSW---DPITQKHKGFAFVEYDIPEAAQLS 102
R+YVG++ F + E + + F PFG I + + W P + +G+AFV+Y E AQL+
Sbjct: 14 RLYVGNLDFRMSESDVIKMFSPFGKITAEDFLWHTRGPKRGEPRGYAFVQYTTKEEAQLA 73
Query: 103 LEQMNGVMLGGRNIKVHF 120
E+MNG ++ GR + VH
Sbjct: 74 KEKMNGKLICGRPMVVHL 91
>gi|347967649|ref|XP_312633.5| AGAP002335-PA [Anopheles gambiae str. PEST]
gi|333468363|gb|EAA07505.5| AGAP002335-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++ ++VG +S E+ +T+R+AF PFG I + + DP T K +G+AFV +
Sbjct: 88 PKTDTSQHHHIFVGDLSPEIDTETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKK 147
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ ++ MNG LG R+I+ ++
Sbjct: 148 AEAENAIAMMNGQWLGSRSIRTNW 171
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 24/127 (18%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINM----SWDPITQKHKGFAFVEYDIPEAA 99
P +YVG++ + E+ + F G +KS + S DP FAF+EY ++A
Sbjct: 7 PKTLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIRETSIDP-------FAFIEYANHQSA 59
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
Q +L MN M + I+V++ A S ++ + ++ I+V + P+
Sbjct: 60 QTALAAMNKRMFLKKEIRVNW-------------ATSAGNQPKTDTSQHHHIFVGDLSPE 106
Query: 160 LTEEDIK 166
+ E ++
Sbjct: 107 IDTETLR 113
>gi|153208628|ref|ZP_01946885.1| RNA-binding protein [Coxiella burnetii 'MSU Goat Q177']
gi|120575889|gb|EAX32513.1| RNA-binding protein [Coxiella burnetii 'MSU Goat Q177']
Length = 103
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++YVGS+S+++ D ++ F +G I+ + D T + KGFAF+ Y +AAQ +
Sbjct: 2 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 61
Query: 103 LEQMNGVMLGGRNIKVHFPH 122
+ + NG+ L GR I+V+
Sbjct: 62 VSKANGIDLQGRKIRVNIAR 81
>gi|165919016|ref|ZP_02219102.1| RNA-binding protein [Coxiella burnetii Q321]
gi|165917271|gb|EDR35875.1| RNA-binding protein [Coxiella burnetii Q321]
Length = 107
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++YVGS+S+++ D ++ F +G I+ + D T + KGFAF+ Y +AAQ +
Sbjct: 2 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 61
Query: 103 LEQMNGVMLGGRNIKVHFPH 122
+ + NG+ L GR I+V+
Sbjct: 62 VSKANGIDLQGRKIRVNIAR 81
>gi|161830439|ref|YP_001597044.1| RNA-binding protein [Coxiella burnetii RSA 331]
gi|161762306|gb|ABX77948.1| RNA-binding protein [Coxiella burnetii RSA 331]
Length = 107
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++YVGS+S+++ D ++ F +G I+ + D T + KGFAF+ Y +AAQ +
Sbjct: 2 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 61
Query: 103 LEQMNGVMLGGRNIKVHFPH 122
+ + NG+ L GR I+V+
Sbjct: 62 VSKANGIDLQGRKIRVNIAR 81
>gi|410922589|ref|XP_003974765.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Takifugu rubripes]
Length = 386
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ D ++ AF PFG I + D T K KG+ FV +
Sbjct: 84 PTSQKKDTSNHFHVFVGDLSPEITTDDVKAAFGPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS---VIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P ++ S D++ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKTTYESNSKQLCFDDVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVSTGLTEQLMR 220
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+ P +YVG++S ++ E I Q F GP KS M D T + + FVE+ A
Sbjct: 4 DQPRTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVD--TAGNDPYCFVEFYEHRHAAA 61
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161
SL MNG + G+ +KV++ + P +Q ++ + ++V + P++T
Sbjct: 62 SLAAMNGRKIMGKEVKVNW--------ATTPTSQK------KDTSNHFHVFVGDLSPEIT 107
Query: 162 EEDIK 166
+D+K
Sbjct: 108 TDDVK 112
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G +S L E +RQ F PFGPI I + D KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVSTGLTEQLMRQTFSPFGPIMEIRVFPD------KGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 249 ESAAHAIVSVNGSSIEGHVVKCYW 272
>gi|395394008|ref|NP_001257441.1| RNA-binding motif protein, Y chromosome, family 1 member B [Mus
musculus]
gi|341942161|sp|Q60990.3|RBY1B_MOUSE RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member B; AltName: Full=RNA-binding motif protein 1
Length = 380
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ P ++++G ++ + ++ T+++ F FGP+ + + D T+K +GFAF+ + P
Sbjct: 2 AETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
A+ ++++MNGV+L G+ IKV Q RPS++
Sbjct: 62 AKNAVKEMNGVILDGKRIKVK----QARRPSSL 90
>gi|195380577|ref|XP_002049047.1| GJ20975 [Drosophila virilis]
gi|194143844|gb|EDW60240.1| GJ20975 [Drosophila virilis]
Length = 428
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 32 VGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFV 91
+ P+ PD SP ++Y+G + L E+ +++ + FG ++ N+ D IT + KGFAF
Sbjct: 213 ISPVVPD----SPHKIYIGGLPTCLNEEQVKELLVTFGQLRGFNLVKDTITGQSKGFAFC 268
Query: 92 EYDIPEAAQLSLEQMNGVMLGGRNIKVH 119
EY P + ++ +NG+ LG R + V
Sbjct: 269 EYLDPSITEQAIAGLNGMQLGDRKLVVQ 296
>gi|162454265|ref|YP_001616632.1| RNA-binding protein [Sorangium cellulosum So ce56]
gi|161164847|emb|CAN96152.1| RNA-binding protein [Sorangium cellulosum So ce56]
Length = 138
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++SF +T+ AF G ++ I M D T + +GFAFV +AA ++ Q
Sbjct: 4 RLYVGNLSFSTTRETLESAFAAAGEVREIAMPTDRETGQPRGFAFVTMGSAQAANSAISQ 63
Query: 106 MNGVMLGGRNIKVH 119
+NG +L GR +KV+
Sbjct: 64 LNGAVLDGRALKVN 77
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ F + + + F G + ++ + +D +T + +GFAFV E A+ ++
Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 169
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQA------QSVIDEITEEAKLYNRIYVASIHPD 159
+G +GGR +KV+FP V G + A Q +D +++YVA++
Sbjct: 170 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSP-------HKLYVANLSWA 222
Query: 160 LTEEDIK 166
LT + ++
Sbjct: 223 LTSQGLR 229
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+SP ++YV ++S+ L +R AF S + +D + + +GF F+ + EA +
Sbjct: 209 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKS 268
Query: 102 SLEQMNGVMLGGRNIKVH 119
+L+ MN V L GR ++++
Sbjct: 269 ALDTMNEVELEGRPLRLN 286
>gi|209364023|ref|YP_001424629.2| glycine-rich RNA-binding protein [Coxiella burnetii Dugway
5J108-111]
gi|207081956|gb|ABS78255.2| glycine-rich RNA-binding protein [Coxiella burnetii Dugway
5J108-111]
Length = 112
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++YVGS+S+++ D ++ F +G I+ + D T + KGFAF+ Y +AAQ +
Sbjct: 7 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 66
Query: 103 LEQMNGVMLGGRNIKVHFPH 122
+ + NG+ L GR I+V+
Sbjct: 67 VSKANGIDLQGRKIRVNIAR 86
>gi|1843458|gb|AAB81555.1| Rbm [Mus musculus]
Length = 380
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ P ++++G ++ + ++ T+++ F FGP+ + + D T+K +GFAF+ + P
Sbjct: 2 AETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
A+ ++++MNGV+L G+ IKV Q RPS++
Sbjct: 62 AKNAVKEMNGVILDGKRIKVK----QARRPSSL 90
>gi|47228429|emb|CAG05249.1| unnamed protein product [Tetraodon nigroviridis]
Length = 411
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + +++S V+VG +S E+ D I+ AF PFG I + D T K KG+ FV +
Sbjct: 75 PTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFGPFGKISDCRVVKDMATGKSKGYGFVSF 134
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPS------NMPQAQSVIDEITEEAKL 147
A+ +++QM G LGGR I+ ++ +P+ Q DE+ ++
Sbjct: 135 FNKWDAENAIQQMGGQWLGGRQIRTNWA---TRKPAPKTTNETTNTKQLSFDEVVNQSSP 191
Query: 148 YN-RIYVASIHPDLTEEDIK 166
N +Y + LTE+ ++
Sbjct: 192 SNCTVYCGGVTTGLTEQIMR 211
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 22/114 (19%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 186 VNQSSPSNCTVYCGGVTTGLTEQIMRQTFSPFGHIMEIRVFPD------KGYSFVRFNSH 239
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHV--------------QVGRPSNMPQAQS 136
EAA ++ +NG + G +K ++ QVG PS+ P+ +S
Sbjct: 240 EAAAHAIVSVNGTTIEGYVVKCYWGKETTDMVSPMQQVQMPQVGSPSHHPRLES 293
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107
YVG++S ++ E I + F GP KS M D T H + FVE+ A ++ MN
Sbjct: 1 YVGNLSRDVTEALILELFGQIGPCKSCKMIVD--TAGHDPYCFVEFYEHRHATATIAAMN 58
Query: 108 GVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G + G+ +KV++ + P +Q ++ + ++V + P++T +DIK
Sbjct: 59 GRKILGKEVKVNW--------ATTPTSQK------KDTSSHFHVFVGDLSPEITTDDIK 103
>gi|384245985|gb|EIE19477.1| hypothetical protein COCSUDRAFT_67908 [Coccomyxa subellipsoidea
C-169]
Length = 164
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+N +YVG + + E + AF+PFG IK +N+ D T KH+GF FVEY+ E +
Sbjct: 13 TNKKTTLYVGGLEENVNEAILHSAFIPFGDIKDVNIPLDNTTGKHRGFGFVEYENAEDSA 72
Query: 101 LSLEQMNGVMLGGRNIKVHFPH 122
+++ M+ L GR ++ ++
Sbjct: 73 DAIDNMHNAELYGRVLRCNYAQ 94
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+VYVG++S+ +DT+RQAF FG I + D T + +GF FV + PE A ++
Sbjct: 4 KVYVGNLSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAINN 63
Query: 106 MNGVMLGGRNIKVHFPHVQ 124
+N L GR I+V+ + +
Sbjct: 64 LNEQELDGRRIRVNLANAK 82
>gi|427789733|gb|JAA60318.1| Putative rox8 [Rhipicephalus pulchellus]
Length = 406
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
TP ++++ ++VG +S E++ +R AF PFG I + DP T K KG+ FV +
Sbjct: 92 TPKLDTSKHHHIFVGDLSPEIETTQLRDAFAPFGDISDCRVVRDPQTLKSKGYGFVSFVK 151
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVI---------DEITEEAK 146
A+ ++ MNG LG R I+ ++ + P+N QA+ I DE+ ++
Sbjct: 152 KADAENAIGTMNGQWLGSRAIRTNWATRKP--PANRTQAEVDITTSTKPLTFDEVYNQSS 209
Query: 147 LYN-RIYVASIHPDLTEE 163
N +Y I L+EE
Sbjct: 210 PTNCTVYCGGITQGLSEE 227
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 34 PITPD--VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
P+T D N +SP VY G I+ L E+ +++ F +G I+ I + K KG+A
Sbjct: 198 PLTFDEVYNQSSPTNCTVYCGGITQGLSEELMQKTFSSYGAIQEIRVF------KDKGYA 251
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQ 135
F+ + EAA ++ + + G+ +K + + P+N Q Q
Sbjct: 252 FIRFGTKEAATHAIVATHNSDVNGQTVKCSWGK-EATDPNNQQQPQ 296
>gi|322696259|gb|EFY88054.1| splicing factor 3b subunit 4 [Metarhizium acridum CQMa 102]
Length = 578
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G+I TI + L GPI +I+M D +TQ H+GF FVE+ P A+ + M
Sbjct: 35 IYIGNIDERATTATIYEIMLQMGPIHNIHMPRDRVTQNHQGFGFVEFRTPSDAEYAANVM 94
Query: 107 NGVMLGGRNIKVH 119
NG+ L G++++V+
Sbjct: 95 NGIKLFGKSLRVN 107
>gi|406944721|gb|EKD76419.1| hypothetical protein ACD_43C00118G0001 [uncultured bacterium]
Length = 84
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++VG I+F+ +DT+R+AF+ G + S + D +T + +GF FVE PE AQ +++
Sbjct: 5 LFVGGIAFKSTDDTLREAFMQAGNVVSAKIIMDKMTGRSRGFGFVEMSTPEEAQAAIQMW 64
Query: 107 NGVMLGGRNIKVH 119
+G L GR I V
Sbjct: 65 DGKELDGRRIAVK 77
>gi|119357086|ref|YP_911730.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119354435|gb|ABL65306.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +Y+G++++ + ED +R AF FG + S N+ D + + KGF F+E A+ ++E
Sbjct: 1 MNIYIGNLAYTVSEDDLRDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIE 60
Query: 105 QMNGVMLGGRNIKVH 119
MN L GR IKV+
Sbjct: 61 SMNDQDLKGRTIKVN 75
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ F + + + F G + ++ + +D +T + +GFAFV E A+ ++
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQA------QSVIDEITEEAKLYNRIYVASIHPD 159
+G +GGR +KV+FP V G + A Q +D +++YVA++
Sbjct: 164 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSP-------HKLYVANLSWA 216
Query: 160 LTEEDIK 166
LT + ++
Sbjct: 217 LTSQGLR 223
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+SP ++YV ++S+ L +R AF S + +D + + +GF F+ + EA +
Sbjct: 203 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKS 262
Query: 102 SLEQMNGVM 110
+L+ MN V+
Sbjct: 263 ALDTMNEVV 271
>gi|242773880|ref|XP_002478329.1| RNA splicing factor (Pad-1), putative [Talaromyces stipitatus ATCC
10500]
gi|218721948|gb|EED21366.1| RNA splicing factor (Pad-1), putative [Talaromyces stipitatus ATCC
10500]
Length = 562
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 40 NSNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++++P R+YVG+I F + E+ I+ F PFG ++ + + D T + +G+ FV++ P
Sbjct: 262 SASAPFHRLYVGNIHFSITENDIQNVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQ 320
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ +LE+MNG L GR I+V
Sbjct: 321 AREALEKMNGFDLAGRPIRV 340
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 36 TPDVNSNSPLR----VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFV 91
TP+ N R V+V ++ L+ + F GP+K + D ++ + KG +V
Sbjct: 156 TPEEELNEDERDKRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYV 215
Query: 92 EYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRI 151
E+ + L++ Q+ G L G I + R + P+A S + ++R+
Sbjct: 216 EFKDEASVPLAI-QLTGQKLLGIPIIAQLTEAEKNRQARNPEASSG----QSASAPFHRL 270
Query: 152 YVASIHPDLTEEDIK 166
YV +IH +TE DI+
Sbjct: 271 YVGNIHFSITENDIQ 285
>gi|119494703|ref|XP_001264168.1| RNA splicing factor (Pad-1), putative [Neosartorya fischeri NRRL
181]
gi|119412330|gb|EAW22271.1| RNA splicing factor (Pad-1), putative [Neosartorya fischeri NRRL
181]
Length = 566
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 40 NSNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N +P R+YVG+I F + E+ ++ F PFG ++ + + D + KG+ FV++ P
Sbjct: 269 NHAAPFHRLYVGNIHFSITENDLQNVFEPFGELEFVQLQKDE-AGRSKGYGFVQFRDPNQ 327
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A+ +LE+MNG L GR I+V + + S+ ++QS
Sbjct: 328 AREALEKMNGFDLAGRAIRVGLGNDKFTPDSSAQRSQS 365
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 36 TPDVNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+P++N + R ++V ++ L+ + F GP+K + D ++ + KG +VE+
Sbjct: 165 SPELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEF 224
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
E+ ++ Q+ G L G I + R + P+A S A ++R+YV
Sbjct: 225 KSEESVAPAI-QLTGQKLLGIPIIAQLTEAEKNRQARNPEASSG----HNHAAPFHRLYV 279
Query: 154 ASIHPDLTEEDIK 166
+IH +TE D++
Sbjct: 280 GNIHFSITENDLQ 292
>gi|70996384|ref|XP_752947.1| RNA splicing factor (Pad-1) [Aspergillus fumigatus Af293]
gi|66850582|gb|EAL90909.1| RNA splicing factor (Pad-1), putative [Aspergillus fumigatus Af293]
gi|159131701|gb|EDP56814.1| RNA splicing factor (Pad-1), putative [Aspergillus fumigatus A1163]
Length = 566
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 40 NSNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N +P R+YVG+I F + E+ ++ F PFG ++ + + D + KG+ FV++ P
Sbjct: 269 NHAAPFHRLYVGNIHFSITENDLQNVFEPFGELEFVQLQKDE-AGRSKGYGFVQFRDPNQ 327
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
A+ +LE+MNG L GR I+V + + S+ ++QS
Sbjct: 328 AREALEKMNGFDLAGRAIRVGLGNDKFTPDSSAQRSQS 365
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 36 TPDVNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+P++N + R ++V ++ L+ + F GP+K + D ++ + KG +VE+
Sbjct: 165 SPELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEF 224
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
E+ ++ Q+ G L G I + R + P+A S A ++R+YV
Sbjct: 225 KSEESVAPAI-QLTGQKLLGIPIIAQLTEAEKNRQARNPEASSG----HNHAAPFHRLYV 279
Query: 154 ASIHPDLTEEDIK 166
+IH +TE D++
Sbjct: 280 GNIHFSITENDLQ 292
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ F + + + F G + ++ + +D +T + +GFAFV E A+ ++
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQA------QSVIDEITEEAKLYNRIYVASIHPD 159
+G +GGR +KV+FP V G + A Q +D +++YVA++
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSP-------HKLYVANLSWA 227
Query: 160 LTEEDIK 166
LT + ++
Sbjct: 228 LTSQGLR 234
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+SP ++YV ++S+ L +R AF S + +D + + +GF F+ + EA
Sbjct: 214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNS 273
Query: 102 SLEQMNGVMLGGRNIKVH 119
+L+ MN V L GR ++++
Sbjct: 274 ALDTMNEVELEGRPLRLN 291
>gi|78185978|ref|YP_374021.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78165880|gb|ABB22978.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 99
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
+ +Y+G++ + + ED +R AF FG + S N+ D + + KGF FV+ EA + ++
Sbjct: 9 KMNIYIGNLPYSVSEDDLRDAFSQFGQVDSANIIMDKFSGRSKGFGFVDMSSDEAGRAAI 68
Query: 104 EQMNGVMLGGRNIKVH 119
E MN GR IKV+
Sbjct: 69 EAMNEQEFKGRTIKVN 84
>gi|169767236|ref|XP_001818089.1| RNA-binding protein rsd1 [Aspergillus oryzae RIB40]
gi|238484073|ref|XP_002373275.1| RNA splicing factor (Pad-1), putative [Aspergillus flavus NRRL3357]
gi|83765944|dbj|BAE56087.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220701325|gb|EED57663.1| RNA splicing factor (Pad-1), putative [Aspergillus flavus NRRL3357]
gi|391870727|gb|EIT79903.1| transcriptional coactivator CAPER [Aspergillus oryzae 3.042]
Length = 568
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 37 PDVNSN----SPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFV 91
PD +S +P R+YVG+I F + E+ ++ F PFG ++ + + D T + +G+ FV
Sbjct: 264 PDASSGNNHAAPFHRLYVGNIHFSITENDLQNVFEPFGELEFVQLQKDE-TGRSRGYGFV 322
Query: 92 EYDIPEAAQLSLEQMNGVMLGGRNIKV 118
++ P A+ +LE+MNG L GR I+V
Sbjct: 323 QFRDPNQAREALEKMNGFDLAGRAIRV 349
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 36 TPDVNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
TP++N + R ++V ++ L+ + F GP+K + D ++ + KG +VE+
Sbjct: 167 TPELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEF 226
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
++ ++ Q+ G L G I + R + P A S A ++R+YV
Sbjct: 227 KNEDSVAPAI-QLTGQKLLGIPIIAQLTEAEKNRQARNPDASSG----NNHAAPFHRLYV 281
Query: 154 ASIHPDLTEEDIK 166
+IH +TE D++
Sbjct: 282 GNIHFSITENDLQ 294
>gi|168067714|ref|XP_001785753.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662601|gb|EDQ49434.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 79
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
D NS VYVG +S+E EDT+R+ F+ FG + S+ + D ++ + +GF FV +
Sbjct: 2 DDANS-----VYVGGLSYESTEDTVRKHFMTFGEVLSVKIVHDKMSGESRGFGFVTFANQ 56
Query: 97 EAAQLSLEQMNGVMLGGRNIKVH 119
+A +++ +GV + GR I+V+
Sbjct: 57 RSASMAISDGDGVQIEGRCIRVN 79
>gi|121700823|ref|XP_001268676.1| RNA splicing factor (Pad-1), putative [Aspergillus clavatus NRRL 1]
gi|119396819|gb|EAW07250.1| RNA splicing factor (Pad-1), putative [Aspergillus clavatus NRRL 1]
Length = 566
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 40 NSNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N +P R+YVG+I F + E+ ++ F PFG ++ + + D T + +G+ FV++ P
Sbjct: 269 NHAAPFHRLYVGNIHFSITENDLQNVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQ 327
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ +LE+MNG L GR I+V
Sbjct: 328 AREALEKMNGFDLAGRAIRV 347
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 36 TPDVNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+P++N + R ++V ++ L+ + F GP+K + D ++ + KG +VE+
Sbjct: 165 SPELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEF 224
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
E+ ++ Q+ G L G I + R + P+A S A ++R+YV
Sbjct: 225 KSEESVAPAI-QLTGQKLLGIPIIAQLTEAEKNRQARNPEASSG----HNHAAPFHRLYV 279
Query: 154 ASIHPDLTEEDIK 166
+IH +TE D++
Sbjct: 280 GNIHFSITENDLQ 292
>gi|325972712|ref|YP_004248903.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
gi|324027950|gb|ADY14709.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
Length = 92
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++S+ E+ +R F +G + S N+ D T++ KGF FVE AA ++ Q
Sbjct: 4 KIYVGNLSYNTSEEELRDLFAQYGTVVSANIIIDRETRRPKGFGFVEMQEDAAADAAISQ 63
Query: 106 MNGVMLGGRNIKVH 119
++G +GGRN++V+
Sbjct: 64 LDGKEIGGRNLRVN 77
>gi|375012528|ref|YP_004989516.1| RRM domain-containing RNA-binding protein [Owenweeksia
hongkongensis DSM 17368]
gi|359348452|gb|AEV32871.1| RRM domain-containing RNA-binding protein [Owenweeksia
hongkongensis DSM 17368]
Length = 111
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ ++VGS+ + +E+ +R AF +G + S+ + D T + KGF FVE +AAQ +++
Sbjct: 1 MNIFVGSLPWATEEEDLRGAFEAYGEVDSVRIITDKFTGRSKGFGFVEMPDDDAAQKAID 60
Query: 105 QMNGVMLGGRNIKVH 119
++NG GGR+I V+
Sbjct: 61 ELNGSQFGGRDIVVN 75
>gi|326437182|gb|EGD82752.1| hypothetical protein PTSG_03403 [Salpingoeca sp. ATCC 50818]
Length = 1027
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 10/112 (8%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINM---SWDPITQKHKGFAFVEYDIPEAAQLS 102
+V V +++FE + IRQ F P+G +KS+ + S+DP +H+GFAFVE+ E A+ +
Sbjct: 911 KVVVRNVAFEATKKDIRQLFTPYGDVKSVRLPPKSFDP--TQHRGFAFVEFSSKEEAKSA 968
Query: 103 LEQMNG-VMLGGRNIKVHFPH----VQVGRPSNMPQAQSVIDEITEEAKLYN 149
E ++G L GR + + F V+ R ++ D+ +++AKL+N
Sbjct: 969 FEALSGSTHLYGRRLNLEFAKDDNSVEKLRSKARTAKRATADQPSKKAKLHN 1020
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R++V ++++ ED IR F FGP+ ++M D T+K KG AFV + PE A + Q
Sbjct: 504 RIFVRNLAYVCTEDDIRALFEKFGPLSEVHMPLDTQTKKPKGIAFVTFLHPENAVKAFTQ 563
Query: 106 MNGVMLGGR 114
++ + GR
Sbjct: 564 LDASVFKGR 572
>gi|330836185|ref|YP_004410826.1| RNP-1 like RNA-binding protein [Sphaerochaeta coccoides DSM 17374]
gi|329748088|gb|AEC01444.1| RNP-1 like RNA-binding protein [Sphaerochaeta coccoides DSM 17374]
Length = 91
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++++ ED +R F +G + S N+ D T + KGFAFVE + AA ++ Q
Sbjct: 4 KIYVGNMNYRTTEDQLRDLFAQYGTVSSANIIIDRETHRPKGFAFVEMEDDGAADAAISQ 63
Query: 106 MNGVMLGGRNIKVH 119
++G GRN++V+
Sbjct: 64 LDGKEFDGRNLRVN 77
>gi|344338389|ref|ZP_08769321.1| RNP-1 like RNA-binding protein [Thiocapsa marina 5811]
gi|343801671|gb|EGV19613.1| RNP-1 like RNA-binding protein [Thiocapsa marina 5811]
Length = 90
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++++ + +D ++ AF +G I S+N+ D T + KGF FVE A +++
Sbjct: 1 MNIYVGNLAYGVTQDELKTAFSAYGEISSVNLITDKFTGESKGFGFVEMPNNSEADAAIK 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPSNMPQ 133
+N L GRN+KV+ + RPS P+
Sbjct: 61 GLNETPLKGRNLKVNQAKPRGERPSRGPR 89
>gi|449268619|gb|EMC79473.1| Peptidyl-prolyl cis-trans isomerase E, partial [Columba livia]
Length = 291
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 50 GSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGV 109
G ++ E+ E + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ MN
Sbjct: 1 GGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 60
Query: 110 MLGGRNIKVHF 120
L GR I+V+
Sbjct: 61 ELFGRTIRVNL 71
>gi|281337315|gb|EFB12899.1| hypothetical protein PANDA_022213 [Ailuropoda melanoleuca]
Length = 231
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107
+ G ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ MN
Sbjct: 124 HAGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 183
Query: 108 GVMLGGRNIKVHF 120
L GR I+V+
Sbjct: 184 ESELFGRTIRVNL 196
>gi|325303220|tpg|DAA34696.1| TPA_inf: apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Amblyomma variegatum]
Length = 374
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
TP ++++ ++VG +S E++ +R AF PFG I + DP T K KG+ FV +
Sbjct: 57 TPKLDTSKHHHIFVGDLSPEIETTQLRDAFAPFGDISDCRVVRDPQTLKSKGYGFVSFVK 116
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVI---------DEITEEAK 146
A+ ++ MNG LG R I+ ++ + P+N QA+ I DE+ ++
Sbjct: 117 KADAENAIGTMNGQWLGSRAIRTNWATRKP--PANRTQAEVDITTSTKPLTFDEVYNQSS 174
Query: 147 LYN-RIYVASIHPDLTEE 163
N +Y I L+EE
Sbjct: 175 PTNCTVYCGGITQGLSEE 192
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 34 PITPD--VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
P+T D N +SP VY G I+ L E+ +++ F +G I+ I + K KG+A
Sbjct: 163 PLTFDEVYNQSSPTNCTVYCGGITQGLSEELMQKTFSSYGAIQEIRVF------KDKGYA 216
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITE 143
F++ EAA ++ + + G+ +K + + P+N Q Q E+++
Sbjct: 217 FIKVGTKEAATHAIVATHNSDVNGQTVKCSWGK-EATDPNNQQQPQVSPGELSK 269
>gi|431931272|ref|YP_007244318.1| RRM domain-containing RNA-binding protein [Thioflavicoccus mobilis
8321]
gi|431829575|gb|AGA90688.1| RRM domain-containing RNA-binding protein [Thioflavicoccus mobilis
8321]
Length = 94
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++++ + ED +R+AF FG I S+++ D T + KGF FVE A +++
Sbjct: 1 MNIYVGNLAYGVTEDELREAFGAFGEISSVSVITDKFTGQSKGFGFVEMPNNSEADAAIK 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRP 128
+N L GRNI+V+ + RP
Sbjct: 61 ALNETPLKGRNIRVNEARPRAERP 84
>gi|327293227|ref|XP_003231310.1| RNA splicing factor [Trichophyton rubrum CBS 118892]
gi|326466426|gb|EGD91879.1| RNA splicing factor [Trichophyton rubrum CBS 118892]
Length = 592
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 7/88 (7%)
Query: 37 PDVNSNS-----PL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
PD +SN+ P R+YVG+I F + E ++ F PFG + + + + T + KG+ F
Sbjct: 285 PDAHSNNNQQSIPFHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQREE-TGRSKGYGF 343
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
V++ P A+ +LE+MNG L GR I+V
Sbjct: 344 VQFRDPNQAREALEKMNGFDLAGRPIRV 371
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L+ + F GP+K + D ++ + KG +VE+ E+ L++ Q+
Sbjct: 201 VFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAI-QL 259
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G L G I + R + P A S +++ ++R+YV +IH +TE D++
Sbjct: 260 TGQKLLGIPIIAQLTEAEKNRQARNPDAHS---NNNQQSIPFHRLYVGNIHFSITESDLQ 316
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
+ + S R++VG++ F L + Q F G + S+ + +D IT + +GFAFV
Sbjct: 98 LNQEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMG 157
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ-VGRPSNMPQA-QSVIDEITEEAKLYNRIY 152
E A+ ++ +G +GGR IKV+FP V VG+ M + +D ++IY
Sbjct: 158 NVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSP-------HKIY 210
Query: 153 VASIHPDLTEEDIK 166
++ D+T + ++
Sbjct: 211 AGNLGWDMTSQYLR 224
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+SP ++Y G++ +++ +R+AF + S + ++ K +G+ FV ++ E ++
Sbjct: 204 DSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEV 263
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQ 133
+L MNGV + GR +++ V +PS++ Q
Sbjct: 264 ALSAMNGVEVQGRPLRLKLA-VDNRKPSSLDQ 294
>gi|384498314|gb|EIE88805.1| hypothetical protein RO3G_13516 [Rhizopus delemar RA 99-880]
Length = 199
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG ++ E+ +T+ QAF FG + ++ WDP++ K +GF FV + A+ ++
Sbjct: 75 FHIFVGDLAPEITNETLAQAFSVFGTMSEAHVMWDPMSGKSRGFGFVAFRDKADAEKAIA 134
Query: 105 QMNGVMLGGRNIKVHFP--HVQVGRPSNMPQAQSVIDEITEEAKLY-NRIYVASIHPDLT 161
MNG LG R ++ ++ Q P P Q + + ++ Y IYV +I P ++
Sbjct: 135 TMNGEWLGSRPVRCNWATQKGQTAMPVPQPGQQLPYEIVVQQTPAYVTSIYVGNIPPHVS 194
Query: 162 EE 163
+
Sbjct: 195 RK 196
>gi|405120919|gb|AFR95689.1| RNA splicing factor Pad-1 [Cryptococcus neoformans var. grubii H99]
Length = 588
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 7/104 (6%)
Query: 19 YPFLSTPLYDLKQVGPITPDVNSNSPL---RVYVGSISFELKEDTIRQAFLPFGPIKSIN 75
YP LST L DL + PD + ++ + R++V +++F L D +RQ F PFG I+ ++
Sbjct: 332 YPPLSTGL-DLPP--GLDPDAHKDAAIPYHRLFVSNLAFSLTADDVRQVFEPFGEIEFVD 388
Query: 76 MSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119
+ D ++ KG A+V++ ++AQ++L+ M G L GR IKV
Sbjct: 389 LHMD-LSGLRKGTAYVQFKDVKSAQMALDAMAGFDLAGRLIKVQ 431
>gi|303247333|ref|ZP_07333606.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
gi|302491247|gb|EFL51136.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
Length = 103
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++SF ED +R F P+G + S+N+ D T + +GF FVE D E A ++
Sbjct: 4 KLYVGNLSFSSTEDDVRDHFAPYGEVISVNLITDRETGRLRGFGFVEMD-DEGASAAISA 62
Query: 106 MNGVMLGGRNIKVH 119
++G L GR +KV+
Sbjct: 63 LDGKELAGRTLKVN 76
>gi|326476993|gb|EGE01003.1| nucleolin protein Nsr1 [Trichophyton equinum CBS 127.97]
Length = 479
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G+ISF E+ +++ F +G I+ I + DP + + KGF +V++ + A+ +LE
Sbjct: 346 LFIGNISFSADENMVQELFSKYGTIQGIRLPTDPDSGRPKGFGYVQFSSVDEARAALEAE 405
Query: 107 NGVMLGGRNIKVHF 120
NG LGGR+I++ F
Sbjct: 406 NGADLGGRSIRLDF 419
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
DV + ++VG++S+ + E+ +R F FG + + D + + +GF +VE+ E
Sbjct: 231 DVPEGASANLFVGNLSWNVDEEWLRSEFEEFGELSGTRIVTDRESGRSRGFGYVEFVNVE 290
Query: 98 AAQLSLEQMNGVMLGGRNIKVHF 120
A + L GR + + +
Sbjct: 291 DAVKAHGAKKDAELDGRKMNLDY 313
>gi|452851903|ref|YP_007493587.1| RNP-1 like RNA-binding protein [Desulfovibrio piezophilus]
gi|451895557|emb|CCH48436.1| RNP-1 like RNA-binding protein [Desulfovibrio piezophilus]
Length = 87
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++S+ ED +R AF FG + S+ + D T + +GF FVE D A +++ +
Sbjct: 5 LYVGNLSWSTTEDEVRAAFAEFGEVLSVKLIEDRETGRPRGFGFVEMD-DNGAGDAVDAL 63
Query: 107 NGVMLGGRNIKVHFPHVQVGRP 128
+G LGGRNIKV+ + RP
Sbjct: 64 DGKDLGGRNIKVNVAKPREERP 85
>gi|260221864|emb|CBA30852.1| Putative RNA-binding protein rbpB [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 124
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 30 KQVGPITPDVNSNSPL--------RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPI 81
K P TP ++S L ++YVG++ + + +D+++ F FG + S + D
Sbjct: 6 KAANPRTPATRADSALTERLTMSSKIYVGNLPYSVTDDSLQSNFSEFGEVTSAKVMMDRD 65
Query: 82 TQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122
T + KGFAFVE P AQ +++ +NG + GR+I V+
Sbjct: 66 TGRSKGFAFVEMSTPAFAQAAIDGLNGQSVDGRSIVVNLAR 106
>gi|328715702|ref|XP_003245699.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 2
[Acyrthosiphon pisum]
gi|328715706|ref|XP_003245700.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 3
[Acyrthosiphon pisum]
Length = 420
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+N + ++VG +S E++ T+R+AF PFG I + DP T K KG+ FV +
Sbjct: 56 INKSEHHHIFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKKAE 115
Query: 99 AQLSLEQMNGVMLGGRNIKVHF 120
A+ ++ MNG LG R+I+ ++
Sbjct: 116 AESAIAAMNGQWLGSRSIRTNW 137
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 34 PITPD--VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
P+T D N +SP VY G ++ L ++ +++ F PFG I+ I + K KG+A
Sbjct: 153 PLTFDEVYNQSSPTNCTVYCGGLTSGLTDELVQKTFAPFGNIQEIRVF------KDKGYA 206
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
FV + E+A ++ ++ + G+ +K +
Sbjct: 207 FVRFATKESATHAIVAVHNSDINGQPVKCSW 237
>gi|255713244|ref|XP_002552904.1| KLTH0D04158p [Lachancea thermotolerans]
gi|238934284|emb|CAR22466.1| KLTH0D04158p [Lachancea thermotolerans CBS 6340]
Length = 260
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 39 VNSNSPLR-VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
V++N P R VY+GSI ++ E+ I GP+ ++ M +DP T K KG+AF+EY E
Sbjct: 6 VHNNPPARTVYLGSIPYDQTEEQILDLCSNVGPVANLKMMFDPQTGKSKGYAFIEYKSLE 65
Query: 98 AAQLSLEQMNGVMLGGRNIK 117
A+ ++ +NG LG R +K
Sbjct: 66 ASASAVRNLNGYQLGNRLLK 85
>gi|185133178|ref|NP_001117016.1| hyperosmotic glycine rich protein [Salmo salar]
gi|28173040|gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 205
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ +AF +G I ++ D T + +GF FV+YD PE A+ +++
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDA 65
Query: 106 MNGVMLGGRNIKVH 119
MNG L GR I+V+
Sbjct: 66 MNGQSLDGRTIRVN 79
>gi|358058197|dbj|GAA95989.1| hypothetical protein E5Q_02647 [Mixia osmundae IAM 14324]
Length = 959
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVGS+++ L D +R+ F PFG + S+++ DP + K KG+ +V++ A + E+M
Sbjct: 391 LYVGSLNYSLTADDMREVFTPFGAVASVDLQTDPGSGKSKGYCYVQFYKHVDAIHAREKM 450
Query: 107 NGVMLGGRNIKV 118
NG L GR +++
Sbjct: 451 NGFQLAGRQLRI 462
Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 69 GPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
GP++ + D I+++ KG +VE+ E Q +L ++G+ + G I+V + + R
Sbjct: 298 GPVREAKVIVDRISRRSKGVGYVEFMELETVQRAL-ALSGMKVLGVPIQVQYTEAEKNRQ 356
Query: 129 SNMPQAQ------------SVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
++ Q+ + D A YN +YV S++ LT +D++
Sbjct: 357 ASTAQSSYGALMDAGFTIPAGSDATPSGAVPYNVLYVGSLNYSLTADDMR 406
>gi|213510736|ref|NP_001133148.1| cold inducible RNA binding protein [Salmo salar]
gi|197632151|gb|ACH70799.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219968|gb|ACM08645.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|221221054|gb|ACM09188.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 154
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ +AF +G I ++ D T + +GF FV+YD E A+ ++E
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDAMEG 65
Query: 106 MNGVMLGGRNIKVH 119
MNG L GR I+V+
Sbjct: 66 MNGQSLDGRTIRVN 79
>gi|50553814|ref|XP_504318.1| YALI0E23628p [Yarrowia lipolytica]
gi|49650187|emb|CAG79917.1| YALI0E23628p [Yarrowia lipolytica CLIB122]
Length = 621
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F + E I Q F FGPI+ ++ + T K KG+ F++Y P+ A+ +LE+
Sbjct: 447 RLYVGNIYFGVTEGEIIQIFEAFGPIEFADLQKEK-TGKSKGYCFIQYVNPDDAKTALEK 505
Query: 106 MNGVMLGGRNIKV 118
MNG L GR ++V
Sbjct: 506 MNGFELAGRKLRV 518
>gi|221221302|gb|ACM09312.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 131
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ +AF +G I ++ D T + +GF FV+YD E A+ ++E
Sbjct: 6 KLFVGGLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDAMEG 65
Query: 106 MNGVMLGGRNIKVH 119
MNG L GR I+V+
Sbjct: 66 MNGQSLDGRTIRVN 79
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+SN R+YVG++ + + + + F G + S+ + +D +T + +GFAFV E A
Sbjct: 103 DSNDAGRLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDA 162
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
+ ++ +G +GGR +KV+FP V G + +++ ++IY ++
Sbjct: 163 KEAIRMFDGSQVGGRTVKVNFPEVPKG-GERLVMGSKILNSYRGFVDSPHKIYAGNLGWG 221
Query: 160 LTEEDIK 166
LT + ++
Sbjct: 222 LTSQGLR 228
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+SP ++Y G++ + L +R+AF + S + ++ + + +GF FV ++ E+A+
Sbjct: 208 DSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARA 267
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
+L+ MNGV + GR ++++ + PS+ P Q + E ++L
Sbjct: 268 ALDIMNGVEVQGRPLRLNLAEART--PSSPPVIQKNVGSNVESSEL 311
>gi|296422065|ref|XP_002840583.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636802|emb|CAZ84774.1| unnamed protein product [Tuber melanosporum]
Length = 559
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++VGS+S+ + E +R F FG I ++ + D + + KGF +VEY EAA+ +LE+M
Sbjct: 304 LFVGSLSWNVDEGWLRNEFEQFGEIAAVRVVTDRESGRSKGFGYVEYTTNEAAKKALEEM 363
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVI--DEITEEAKLYNRIYVASIHPDLTEED 164
G + GR I V F RP N Q +S + D+ + E++ ++VA++ + E+
Sbjct: 364 KGKDIDGRTINVDF---SAPRPENPRQDRSRLYGDQKSPESE---TVFVANLSFEADEQI 417
Query: 165 IK 166
++
Sbjct: 418 VQ 419
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D S V+V ++SFE E ++ F FG I + + DP + + KGF +++YD +
Sbjct: 395 DQKSPESETVFVANLSFEADEQIVQTEFEGFGNIVGLRIPTDPESGQPKGFCYIQYDRVD 454
Query: 98 AAQLSLEQMNGVMLGGRNIKVHF 120
+A+ ++E+MNG ++ GR I+ F
Sbjct: 455 SARKAVEEMNGALVAGRAIRTDF 477
>gi|218184933|gb|EEC67360.1| hypothetical protein OsI_34460 [Oryza sativa Indica Group]
Length = 167
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSW---DPITQKHKGFAFVEYDIP 96
S R+YVG++ F + E I + F PFG I + + W P + +G+AFV+Y
Sbjct: 8 GDRSESRLYVGNLDFRVSESDIIKMFSPFGKIIAEDFLWHTRGPKRGEPRGYAFVQYTTK 67
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E AQL+ E+MNG ++ GR + VH
Sbjct: 68 EEAQLAKEKMNGRLVCGRPVVVHL 91
>gi|222613180|gb|EEE51312.1| hypothetical protein OsJ_32272 [Oryza sativa Japonica Group]
Length = 167
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSW---DPITQKHKGFAFVEYDIP 96
S R+YVG++ F + E I + F PFG I + + W P + +G+AFV+Y
Sbjct: 8 GDRSESRLYVGNLDFRVSESDIIKMFSPFGKIIAEDFLWHTRGPKRGEPRGYAFVQYTTK 67
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E AQL+ E+MNG ++ GR + VH
Sbjct: 68 EEAQLAKEKMNGRLVCGRPVVVHL 91
>gi|47229936|emb|CAG10350.1| unnamed protein product [Tetraodon nigroviridis]
Length = 243
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 52 ISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML 111
+S E +R+ F +GP+ +N+ +D +++ +GFAFV ++ E ++ + E NG+ L
Sbjct: 87 LSLYTTERDLREVFSKYGPLADVNIVYDQQSRRSRGFAFVYFENSEDSKEAKEHANGMEL 146
Query: 112 GGRNIKVHF----------PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIY 152
GR I+V + P + +GRP+ QS D + Y+R Y
Sbjct: 147 DGRRIRVDYSITKRAHTPTPGIYMGRPTYGSSRQSSRDYYRGYDRGYDRGY 197
>gi|189500331|ref|YP_001959801.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189495772|gb|ACE04320.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 89
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +Y+G++ + + E+ +R+AF FG + S N+ D T + KGF FVE A +++
Sbjct: 1 MNIYIGNLDYGVSEEDLREAFGEFGEVSSANIISDKFTGRSKGFGFVEMPNDAEANQAID 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPS 129
+N L GR+IKV+ + RPS
Sbjct: 61 ALNDTDLNGRSIKVNQARPREERPS 85
>gi|402084391|gb|EJT79409.1| RNA splicing factor Pad-1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 601
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F + E +R F PFG ++ + + + + +G+ FVEY+ P A+ +LE+
Sbjct: 313 RLYVGNIHFSITEPDLRTVFGPFGELRFVQLQKED-NGRSRGYGFVEYNDPANAREALEK 371
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 372 MNGFDLAGRPIRV 384
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L+ + + F GP+ + + D ++ + KG +VE+ E+ +L Q+
Sbjct: 212 VFVQQLAARLRTKELHEFFEQAGPVAAAQIVKDRVSNRSKGVGYVEFKSEESLPAAL-QL 270
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G L G + V + R + S + + + L++R+YV +IH +TE D++
Sbjct: 271 TGQKLAGIPVIVQPTEAEKNRQVRTTE-NSNANGAQQNSVLFHRLYVGNIHFSITEPDLR 329
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++++ ++ + QAF FG +K+ + D + + +GFAFV P+AA+ +
Sbjct: 91 KLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAFVTMASPDAAEKARRG 150
Query: 106 MNGVMLGGRNIKVHFPH 122
++G L GR I+V+FP
Sbjct: 151 LDGTELAGRAIRVNFPQ 167
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D + R+YVG++ + + + + F+ FG + + D + + +GFAFV PE
Sbjct: 197 DGEAGDANRLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPE 256
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFP----HVQVGRPSNMPQAQ 135
A ++ ++G +GGR I+V+ + GR P+ Q
Sbjct: 257 EANEAMANLDGEEIGGRTIRVNLATKSSGNREGRERRAPREQ 298
>gi|15219486|ref|NP_177494.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|11120799|gb|AAG30979.1|AC012396_15 RNA-binding glycine-rich protein, putative [Arabidopsis thaliana]
gi|62867629|gb|AAY17418.1| At1g73530 [Arabidopsis thaliana]
gi|114050615|gb|ABI49457.1| At1g73530 [Arabidopsis thaliana]
gi|332197351|gb|AEE35472.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 181
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YV +SF EDT+R F FG + +NM D + + KGFAF+ Y+ E A +++
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQ 135
M+G L GR I V + S+M +A+
Sbjct: 138 MHGKFLDGRVIFVEEAKTR----SDMSRAK 163
>gi|42521942|ref|NP_967322.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|39574472|emb|CAE77976.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
Length = 104
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++S+ + +D + F FG + S+N+ D T + KGFAFVE A ++++
Sbjct: 4 KIYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAAIDK 63
Query: 106 MNGVMLGGRNIKV 118
+NG+ LGGR + +
Sbjct: 64 LNGMDLGGRAMNI 76
>gi|440714448|ref|ZP_20895027.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
gi|436440644|gb|ELP33948.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
Length = 196
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++SF+ E+ +R AF +G + ++N+ D T + +GFAFVE E A+ ++E +
Sbjct: 57 IYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENL 116
Query: 107 NGVMLGGRNIKVH 119
NG + GR++ V+
Sbjct: 117 NGHEIDGRSVTVN 129
>gi|421614043|ref|ZP_16055112.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
gi|408495250|gb|EKJ99839.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
Length = 189
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++SF+ E+ +R AF +G + ++N+ D T + +GFAFVE E A+ ++E +
Sbjct: 57 IYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENL 116
Query: 107 NGVMLGGRNIKVH 119
NG + GR++ V+
Sbjct: 117 NGHEIDGRSVTVN 129
>gi|407038416|gb|EKE39116.1| RNA-binding protein TIA-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 28 DLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
+LK T + +++VG + E+ +D + + F FG + + T K KG
Sbjct: 112 ELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKG 171
Query: 88 FAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
+ FV + E A+ +++ MNG L GRNIKV++ + + P+ DEI E
Sbjct: 172 YGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQPKRS--YDEINNETSS 229
Query: 148 YN-RIYVASIHPDLTEEDIK 166
N +Y+ +I ++ +D+K
Sbjct: 230 QNCTVYIGNIPKNVESDDLK 249
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY+G+I ++ D ++Q +G I+ + ++ K KG+AF+++ E+A ++
Sbjct: 234 VYIGNIPKNVESDDLKQLLAEYGSIEEVRLN------KDKGYAFIKFSKHESATSAILMC 287
Query: 107 NGVMLGGRNIK 117
NG ++ G ++
Sbjct: 288 NGKIINGSTLR 298
>gi|417304381|ref|ZP_12091404.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|449136828|ref|ZP_21772190.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
gi|327539333|gb|EGF25954.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|448884533|gb|EMB15023.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
Length = 195
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++SF+ E+ +R AF +G + ++N+ D T + +GFAFVE E A+ ++E +
Sbjct: 57 IYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENL 116
Query: 107 NGVMLGGRNIKVH 119
NG + GR++ V+
Sbjct: 117 NGHEIDGRSVTVN 129
>gi|356576299|ref|XP_003556270.1| PREDICTED: uncharacterized protein LOC100791652 [Glycine max]
Length = 386
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++V +SF E T+R AF FG + + + D I+++ KG+AFVEY EAA +L++
Sbjct: 298 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKE 357
Query: 106 MNGVMLGGRNIKV 118
MNG ++ G I V
Sbjct: 358 MNGKIINGWMIVV 370
>gi|357127016|ref|XP_003565182.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 109
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 25 PLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK 84
PL +L + N +S +++VG +S++ E ++ AF G + + + P+T +
Sbjct: 15 PLRNL-----LNRSANFSSCSKLFVGGLSYDTNEIALKDAFSQHGTVTEVKVICHPVTGR 69
Query: 85 HKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122
KG+ FV++ A +LE+M+ +L GRNI+VH+ +
Sbjct: 70 SKGYGFVKFSSESEAAAALEKMSNELLDGRNIRVHYAN 107
>gi|190344642|gb|EDK36359.2| hypothetical protein PGUG_00457 [Meyerozyma guilliermondii ATCC
6260]
Length = 229
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D + N +YVG++ ++ E + + + F PI+S+N+ D ++ H+G+ FVE+ E
Sbjct: 10 DADRNVKATLYVGNLDPQVNEALLYELLIQFAPIRSLNLPKDRVSGTHQGYGFVEFRGIE 69
Query: 98 AAQLSLEQMNGVMLGGRNIKVHF--PHVQ--VGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
A LE + GV L G+++K+ P+ + G SN SV + + AKL +V
Sbjct: 70 DANYVLEILRGVRLYGKSLKLRRADPNSRGAAGTTSNFANNNSVTNAVDVGAKL----FV 125
Query: 154 ASIHPDLTEE 163
++ P + E+
Sbjct: 126 GNLDPLIDEQ 135
>gi|239905714|ref|YP_002952453.1| RNA-binding protein [Desulfovibrio magneticus RS-1]
gi|410464196|ref|ZP_11317654.1| RRM domain-containing RNA-binding protein [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|239795578|dbj|BAH74567.1| RNA-binding protein [Desulfovibrio magneticus RS-1]
gi|409982676|gb|EKO39107.1| RRM domain-containing RNA-binding protein [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 99
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++SF ED +R F +G + S+N+ D T + +GF FVE D AA +++
Sbjct: 4 KLYVGNLSFSSTEDDVRNHFASYGEVLSVNLITDRETGRLRGFGFVEMDDAGAAA-AIQN 62
Query: 106 MNGVMLGGRNIKVH 119
++G LGGR +KV+
Sbjct: 63 LDGKELGGRTLKVN 76
>gi|224110196|ref|XP_002315444.1| predicted protein [Populus trichocarpa]
gi|222864484|gb|EEF01615.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++ +SF E T+R AF FG + + + D I+++ KG+AFV+Y EAA +L++
Sbjct: 220 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVKYTTEEAASSALKE 279
Query: 106 MNGVMLGGRNI-----KVHFPHVQVGRP 128
MNG ++ G I K + P GRP
Sbjct: 280 MNGKIINGWMIVVDVAKSNPPRYSRGRP 307
>gi|302762278|ref|XP_002964561.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
gi|302814304|ref|XP_002988836.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300143407|gb|EFJ10098.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300168290|gb|EFJ34894.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
Length = 149
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P T ++ ++++G +++ +E +R AF PFG I + + D T + +GF FV Y
Sbjct: 26 PATYTLSRGFSSKLFIGGLAWGTEERGLRDAFSPFGEIIEVRVIQDRETGRSRGFGFVSY 85
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFP 121
+ AQ ++E M+G +L GR I+V++
Sbjct: 86 ITDQEAQKAMEAMDGRVLDGRTIRVNYA 113
>gi|67465872|ref|XP_649094.1| RNA-binding protein TIA-1 [Entamoeba histolytica HM-1:IMSS]
gi|56465456|gb|EAL43711.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449705857|gb|EMD45818.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica KU27]
Length = 306
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 28 DLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
+LK T + +++VG + E+ +D + + F FG + + T K KG
Sbjct: 112 ELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKG 171
Query: 88 FAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
+ FV + E A+ +++ MNG L GRNIKV++ + + P+ DEI E
Sbjct: 172 YGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQPKRS--YDEINNETSS 229
Query: 148 YN-RIYVASIHPDLTEEDIK 166
N +Y+ +I ++ +D+K
Sbjct: 230 QNCTVYIGNIPKNVESDDLK 249
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY+G+I ++ D ++Q +G I+ + ++ K KG+AF+++ E+A ++
Sbjct: 234 VYIGNIPKNVESDDLKQLLAEYGSIEEVRLN------KDKGYAFIKFSKHESATSAILMC 287
Query: 107 NGVMLGGRNIK 117
NG ++ G ++
Sbjct: 288 NGKIINGSTLR 298
>gi|397581731|gb|EJK52035.1| hypothetical protein THAOC_28735 [Thalassiosira oceanica]
Length = 128
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S +YVG ++ +K DT+R AF+PFGPI I M D HKGFAF+E+ + A +
Sbjct: 9 SKRALYVGGVATAVKLDTLRAAFIPFGPINHIEMPMDYERGTHKGFAFIEFQDADDASEA 68
Query: 103 LEQMNGVMLGGRNIKVH 119
+ M+G L + + V+
Sbjct: 69 IYNMDGAELFSKALTVN 85
>gi|339243511|ref|XP_003377681.1| splicing factor U2AFsubunit [Trichinella spiralis]
gi|316973494|gb|EFV57074.1| splicing factor U2AFsubunit [Trichinella spiralis]
Length = 402
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
+ V ++SP ++++G + L E+ +++ + FG +K+ N+ DP TQ KG+AF EY
Sbjct: 184 LVSSVVADSPYKLFIGGLPNYLSEEQVKELLISFGQLKAFNLIKDPATQISKGYAFAEYS 243
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
++ +NG+ LG + + V VG +NM A +
Sbjct: 244 DSTLTDQAIAGLNGMQLGDKKLVVQL--ASVGAKNNMFSAAA 283
>gi|189218303|ref|YP_001938945.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
gi|189185161|gb|ACD82346.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
Length = 143
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ F + E+ +R+ F +G + IN+ D +T + +GFAFV + +AAQ ++
Sbjct: 48 RLYVGNLPFRISENDLREIFEQYGQVNEINLIVDKMTGQSRGFAFVTMESSQAAQSAINN 107
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
+NG + GR I V+ + RP
Sbjct: 108 LNGSSVSGRQIVVNEAKPREERP 130
>gi|407033602|gb|EKE36900.1| RNA recognition motif (RRM, RBD, or RNP domain) containing protein
[Entamoeba nuttalli P19]
Length = 136
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+GS+++ + +++++ AF FG + + D +Q+ KGF FV ++ E A+ ++E+
Sbjct: 3 RLYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEE 62
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
MN L GR IK V V RP
Sbjct: 63 MNEQELEGRRIK-----VDVSRP 80
>gi|168061382|ref|XP_001782668.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665828|gb|EDQ52499.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 82
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 48/73 (65%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG +S+ E+T++++F+ FG + S+ + D + + +GF FV + P AA ++++ M
Sbjct: 7 VYVGGLSYGSTEETLKRSFMQFGEVVSVKIVHDRDSGESRGFGFVTFSNPRAATVAIQDM 66
Query: 107 NGVMLGGRNIKVH 119
+G + GR I+V+
Sbjct: 67 DGRQIEGRTIRVN 79
>gi|385305287|gb|EIF49275.1| nuclear localization sequence binding protein [Dekkera bruxellensis
AWRI1499]
Length = 358
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++VG++SFE D +R AF FG I+ I + P T+ +GFA+V++ E A+ +L+ M
Sbjct: 217 LFVGNLSFEATMDDVRGAFESFGSIEXIRIPTRPGTEDPRGFAYVQFSSVEEAKAALDGM 276
Query: 107 NGVMLGGRNIKVHF 120
NG + GR++++ +
Sbjct: 277 NGEYINGRSVRLDY 290
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFG--PIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
P ++VG +S+ + +D ++Q F+ + S + + + + KGF +V++D A+
Sbjct: 107 PGTMFVGRLSWNVDDDGLKQFFVDENVPGVXSARVITENGSGRSKGFGYVDFDSVAHAEA 166
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLY--------NRIYV 153
++++ +G + GR + H+ + ++ P++ S D AK Y + ++V
Sbjct: 167 AVKKYDGAEIDGRAV-----HLDMA--ASKPRSSSPNDRANNRAKKYGDTPSEPSDTLFV 219
Query: 154 ASIHPDLTEEDIK 166
++ + T +D++
Sbjct: 220 GNLSFEATMDDVR 232
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ + + + Q F G + + + +D +T + +GF FV E A+ +++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKGAMQM 176
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLY----NRIYVASIHPDLT 161
N +GGR +KV+FP V G + + + + I + + Y +++Y ++ DLT
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTK-----IRDNNRSYVDSPHKVYAGNLGWDLT 231
Query: 162 EEDIK 166
+ +K
Sbjct: 232 SQGLK 236
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+SP +VY G++ ++L ++ AF + + ++ T + +GF F+ ++ E Q
Sbjct: 216 DSPHKVYAGNLGWDLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
+L MNGV + GR ++++ + +P+ P SV + TEEA L
Sbjct: 276 ALATMNGVEVEGRALRLNLAS-EREKPTVSP--PSVEEGETEEASL 318
>gi|67483728|ref|XP_657084.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449705266|gb|EMD45349.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 136
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+Y+GS+++ + +++++ AF FG + + D +Q+ KGF FV ++ E A+ ++E+
Sbjct: 3 RLYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEE 62
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
MN L GR IK V V RP
Sbjct: 63 MNEQELEGRRIK-----VDVSRP 80
>gi|164659450|ref|XP_001730849.1| hypothetical protein MGL_1848 [Malassezia globosa CBS 7966]
gi|159104747|gb|EDP43635.1| hypothetical protein MGL_1848 [Malassezia globosa CBS 7966]
Length = 549
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V ++ R+YVG++ +++ +R F PFG + + + ++ +T K KGFAFV++
Sbjct: 308 VTADPEARLYVGNLHYDITSQHVRVVFEPFGHLDEVEVCYNHMTGKSKGFAFVQFRNVHE 367
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ ++EQ+NG L GR ++V
Sbjct: 368 AKQAMEQLNGFELAGRAMRV 387
>gi|357143694|ref|XP_003573016.1| PREDICTED: uncharacterized protein LOC100843274 [Brachypodium
distachyon]
Length = 387
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R++V +SF E T+R AF PFG + + + D I+++ KG+AF+EY +A +L+
Sbjct: 289 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEDAGGAALKA 348
Query: 106 MNGVMLGGRNIKV 118
MNG ++ G I V
Sbjct: 349 MNGEIINGWMIVV 361
>gi|41054740|ref|NP_957426.1| nucleolysin TIAR [Danio rerio]
gi|33416339|gb|AAH55501.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Danio
rerio]
Length = 370
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ D IR AF PFG I + D T K KG+ FV +
Sbjct: 85 PSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSF 144
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM---PQAQSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P ++ Q DE+ ++ N
Sbjct: 145 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNC 204
Query: 150 RIYVASIHPDLTEEDIK 166
+Y I LTE ++
Sbjct: 205 TVYCGGIQSGLTEHLMR 221
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I L E +RQ F PFG I I + KG++F+ +
Sbjct: 196 VNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVF------PEKGYSFIRFSSH 249
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 250 ESAAHAIVSVNGTTIEGHVVKCYW 273
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 26/128 (20%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINM-----SWDPITQKHKGFAFVEYDIPEA 98
P +YVG++S ++ E+ I Q F GP KS M S DP + FVE+
Sbjct: 7 PKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEHTSNDP-------YCFVEFFEHRD 59
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MNG + G+ +KV++ + P +Q ++ + ++V + P
Sbjct: 60 AAAALAAMNGRKILGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSP 105
Query: 159 DLTEEDIK 166
++T +DI+
Sbjct: 106 EITTDDIR 113
>gi|195353012|ref|XP_002043004.1| GM16370 [Drosophila sechellia]
gi|194127069|gb|EDW49112.1| GM16370 [Drosophila sechellia]
Length = 504
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 165 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 224
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV-IDEITEEAKLYN-RIYVASIHPDLT 161
MNG LG R+I+ ++ + P+N + + DE+ ++ N +YV ++ LT
Sbjct: 225 AMNGQWLGSRSIRTNWATRK--PPANKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALT 281
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 245 PPANKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 304
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
K KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 305 ------KDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGK-ESGDPNN 350
>gi|148666753|gb|EDK99169.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_c
[Mus musculus]
Length = 293
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 92 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 151
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 152 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNC 211
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 212 TVYCGGVTSGLTEQLMR 228
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 14 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 71
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 72 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 117
Query: 164 DIK 166
DIK
Sbjct: 118 DIK 120
>gi|255760011|ref|NP_001157551.1| nucleolysin TIA-1 isoform 3 [Mus musculus]
gi|23271442|gb|AAH23813.1| Tia1 protein [Mus musculus]
Length = 285
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
>gi|398337153|ref|ZP_10521858.1| RNA-binding protein [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
gi|398339344|ref|ZP_10524047.1| RNA-binding protein [Leptospira kirschneri serovar Bim str. 1051]
gi|418679408|ref|ZP_13240671.1| hypothetical protein LEP1GSC044_2501 [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418686673|ref|ZP_13247838.1| hypothetical protein LEP1GSC064_2382 [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418742090|ref|ZP_13298463.1| hypothetical protein LEP1GSC122_3008 [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090342|ref|ZP_15551136.1| hypothetical protein LEP1GSC131_0332 [Leptospira kirschneri str.
200802841]
gi|421107449|ref|ZP_15568001.1| hypothetical protein LEP1GSC082_3004 [Leptospira kirschneri str.
H2]
gi|421132619|ref|ZP_15592785.1| hypothetical protein LEP1GSC018_3276 [Leptospira kirschneri str.
2008720114]
gi|400320299|gb|EJO68170.1| hypothetical protein LEP1GSC044_2501 [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410000920|gb|EKO51546.1| hypothetical protein LEP1GSC131_0332 [Leptospira kirschneri str.
200802841]
gi|410007465|gb|EKO61175.1| hypothetical protein LEP1GSC082_3004 [Leptospira kirschneri str.
H2]
gi|410356002|gb|EKP03377.1| hypothetical protein LEP1GSC018_3276 [Leptospira kirschneri str.
2008720114]
gi|410738744|gb|EKQ83477.1| hypothetical protein LEP1GSC064_2382 [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410750448|gb|EKR07428.1| hypothetical protein LEP1GSC122_3008 [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 91
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +Y+G+++++ ED +R+AF FG + S+ + D ++ K +G AFVE + +++
Sbjct: 1 MNIYIGNLAYQATEDDLRKAFESFGEVTSVRIITDKLSGKSRGLAFVEMANKDEGNAAID 60
Query: 105 QMNGVMLGGRNIKVH 119
+NG + GR IKV+
Sbjct: 61 GLNGTQIRGREIKVN 75
>gi|341882512|gb|EGT38447.1| hypothetical protein CAEBREN_12601 [Caenorhabditis brenneri]
Length = 84
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG++ ++ E+ I F G + ++ + +D T + +GFAFVEY AQ +++++
Sbjct: 8 VYVGNVPYQGTEEDIGNYFSTVGVVNNVRIVYDRETGRPRGFAFVEYTDESGAQRAVQEL 67
Query: 107 NGVMLGGRNIKVHFPH 122
NG GRN++V+F +
Sbjct: 68 NGTSFNGRNLRVNFAN 83
>gi|269865317|ref|XP_002651881.1| cleavage and polyadenylation factor CF-IA component RNA15
[Enterocytozoon bieneusi H348]
gi|220063702|gb|EED42174.1| cleavage and polyadenylation factor CF-IA component RNA15
[Enterocytozoon bieneusi H348]
Length = 170
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V++G+I F++ E+TI + G +KS + +D T K KG+ F EY+ PE A ++L+++
Sbjct: 11 VFIGNIDFDIDEETIVKELSAVGKVKSFRLLYDKATGKSKGYGFCEYETPEVADMALKKL 70
Query: 107 NGVMLGGRNIKVHFPH 122
+ GR K+++
Sbjct: 71 K-ISFNGRQAKINYAE 85
>gi|374316448|ref|YP_005062876.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
gi|359352092|gb|AEV29866.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 92
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++S+ E+ +R F +G + S ++ D T++ KGF FVE + AA ++ Q
Sbjct: 4 KIYVGNMSYNTSEEELRDLFSQYGTVLSASIIIDRETRRPKGFGFVEMEEDSAADAAISQ 63
Query: 106 MNGVMLGGRNIKVH 119
++G LGGRN++V+
Sbjct: 64 LDGKDLGGRNLRVN 77
>gi|291386623|ref|XP_002709696.1| PREDICTED: TIA1 cytotoxic granule-associated RNA binding
protein-like [Oryctolagus cuniculus]
Length = 386
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 95 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 155 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNC 214
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 215 TVYCGGVTSGLTEQLMR 231
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107
YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L MN
Sbjct: 21 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 78
Query: 108 GVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G + G+ +KV++ + P +Q ++ + ++V + P++T EDIK
Sbjct: 79 GRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTEDIK 123
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++VG +S E+ ++ +++AF FG +K ++ WD T + +G+ FV + E A+ +L+ M
Sbjct: 195 IFVGDLSSEVNDEALKKAFTKFGSLKQAHVMWDMQTSRSRGYGFVTFGKQEDAENALQSM 254
Query: 107 NGVMLGGRNIKVHF 120
NG LGGR I+ ++
Sbjct: 255 NGEWLGGRAIRCNW 268
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 19/124 (15%)
Query: 47 VYVGSISFELKEDTIRQAFLPFG-PIKSINMSWDPITQKHK---GFAFVEYDIPEAAQLS 102
+YVG+++ E+ I + F PIKSI + + K+K +AF+E++ E A+ +
Sbjct: 102 LYVGNLAKSASEEQINEIFSSVSNPIKSIKL----LNDKNKLGFNYAFIEFNESEDAEKA 157
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTE 162
L +NG + G +IKV++ + Q+ ++ T E YN I+V + ++ +
Sbjct: 158 LNSLNGKDVNGSDIKVNWAY----------QSAAIAGGSTPEEPSYN-IFVGDLSSEVND 206
Query: 163 EDIK 166
E +K
Sbjct: 207 EALK 210
>gi|354491765|ref|XP_003508025.1| PREDICTED: nucleolysin TIAR-like [Cricetulus griseus]
Length = 285
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN---MPQAQSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + + Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYELNTKQLSYDEVVSQSSPSNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
>gi|343427935|emb|CBQ71460.1| related to NSR1-nuclear localization sequence binding protein
[Sporisorium reilianum SRZ2]
Length = 459
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 22 LSTPLYDLKQVGPITPDVNSNSPLR-VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP 80
LSTP D+ + + ++P +++G++SF++ ED + AF G + + + DP
Sbjct: 282 LSTPKGDVTENRAKKFNDQRSAPSSTLFIGNLSFDISEDDVWNAFSEHGEVSGVRLPKDP 341
Query: 81 ITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
+ + KGF +VE+ E+AQ +L+ M G L GR +++ F
Sbjct: 342 DSGRPKGFGYVEFAAQESAQAALDAMTGQELAGRPLRLDF 381
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 63/129 (48%), Gaps = 23/129 (17%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+V+VG +S+ + D ++ FG + S + D T K +GF +V++ AA+ + E+
Sbjct: 208 QVWVGQLSWNVDNDWLKSEMEVFGEVTSARVQLDRTTGKSRGFGYVDFATAAAAKKAFEE 267
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITE-EAKLYNR--------IYVASI 156
G + GR I++ + P+ ++TE AK +N +++ ++
Sbjct: 268 GQGKEVDGRAIRLDL---------STPKG-----DVTENRAKKFNDQRSAPSSTLFIGNL 313
Query: 157 HPDLTEEDI 165
D++E+D+
Sbjct: 314 SFDISEDDV 322
>gi|212212428|ref|YP_002303364.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuG_Q212]
gi|212010838|gb|ACJ18219.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuG_Q212]
Length = 121
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++YVGS+S+++ D ++ F +G I+ + D T + KGFAF+ Y +AAQ +
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 103 LEQMNGVMLGGRNIKVH 119
+ + NG+ L GR I+V+
Sbjct: 76 VSKANGIDLQGRKIRVN 92
>gi|212218608|ref|YP_002305395.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuK_Q154]
gi|215919123|ref|NP_820178.2| nucleic acid binding domain-containing protein [Coxiella burnetii
RSA 493]
gi|206584008|gb|AAO90692.2| glycine-rich RNA-binding protein [Coxiella burnetii RSA 493]
gi|212012870|gb|ACJ20250.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuK_Q154]
Length = 117
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++YVGS+S+++ D ++ F +G I+ + D T + KGFAF+ Y +AAQ +
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 103 LEQMNGVMLGGRNIKVH 119
+ + NG+ L GR I+V+
Sbjct: 76 VSKANGIDLQGRKIRVN 92
>gi|308504932|ref|XP_003114649.1| hypothetical protein CRE_28335 [Caenorhabditis remanei]
gi|308258831|gb|EFP02784.1| hypothetical protein CRE_28335 [Caenorhabditis remanei]
Length = 150
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG++ ++ E+ I F G + ++ + +D T + +GFAFVEY AQ ++E++
Sbjct: 74 VYVGNVPYQGTEEEIGNYFSTVGIVNNVRIVYDRETGRPRGFAFVEYSEEAGAQRAVEEL 133
Query: 107 NGVMLGGRNIKVHFPH 122
NG GRN++V++ +
Sbjct: 134 NGAAFNGRNLRVNYAN 149
>gi|20975276|dbj|BAB92955.1| cold inducible RNA-binding protein alpha [Hyla japonica]
Length = 162
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 51/80 (63%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++S+ +++VG +SF+ +E ++ Q F +G I + + D T++ +GF FV ++ PE
Sbjct: 1 MSSSDEGKLFVGGLSFDTEEQSLEQVFGKYGQISEVVVVKDRETKRSRGFGFVTFENPED 60
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ ++E MNG + GR I+V
Sbjct: 61 AKDAMEAMNGKSVDGRQIRV 80
>gi|32476441|ref|NP_869435.1| RNA-binding protein [Rhodopirellula baltica SH 1]
gi|32446986|emb|CAD78892.1| RNA-binding protein [Rhodopirellula baltica SH 1]
Length = 206
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++SF+ E+ +R AF +G + ++N+ D T + +GFAFVE E A+ ++E +
Sbjct: 68 IYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENL 127
Query: 107 NGVMLGGRNIKVH 119
NG + GR++ V+
Sbjct: 128 NGHEIDGRSVTVN 140
>gi|269862977|ref|XP_002651049.1| cleavage and polyadenylation factor CF-IA component RNA15
[Enterocytozoon bieneusi H348]
gi|220065210|gb|EED43006.1| cleavage and polyadenylation factor CF-IA component RNA15
[Enterocytozoon bieneusi H348]
Length = 171
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V++G+I F++ E+TI + G +KS + +D T K KG+ F EY+ PE A ++L+++
Sbjct: 11 VFIGNIDFDIDEETIVKELSAVGKVKSFRLLYDKATGKSKGYGFCEYETPEVADMALKKL 70
Query: 107 NGVMLGGRNIKVHFPH 122
+ GR K+++
Sbjct: 71 K-ISFNGRQAKINYAE 85
>gi|26390405|dbj|BAC25892.1| unnamed protein product [Mus musculus]
Length = 358
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 67 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 126
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 127 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNC 186
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 187 TVYCGGVTSGLTEQLMR 203
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++FV + E+A ++ +
Sbjct: 188 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 241
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 242 NGTTIEGHVVKCYW 255
>gi|119486604|ref|ZP_01620654.1| RNA-binding region [Lyngbya sp. PCC 8106]
gi|119456221|gb|EAW37353.1| RNA-binding region [Lyngbya sp. PCC 8106]
Length = 100
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 48/75 (64%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ VY+G++++E+ ED ++ F +G +K +++ D T + +GFAFVE D ++E
Sbjct: 1 MSVYIGNLAYEVTEDDLKSVFTDYGSVKRVHIPTDRETGRSRGFAFVEMDTDSEETSAIE 60
Query: 105 QMNGVMLGGRNIKVH 119
+++G GR++KV+
Sbjct: 61 ELDGAEWMGRDLKVN 75
>gi|301758210|ref|XP_002914948.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 2 [Ailuropoda
melanoleuca]
gi|410954993|ref|XP_003984143.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Felis catus]
Length = 375
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 249 ESAAHAIVSVNGTTIEGHVVKCYW 272
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
>gi|307719265|ref|YP_003874797.1| RNA-binding region RNP-1 [Spirochaeta thermophila DSM 6192]
gi|386347364|ref|YP_006045613.1| RNP-1 like RNA-binding protein [Spirochaeta thermophila DSM 6578]
gi|306532990|gb|ADN02524.1| RNA-binding region RNP-1 [Spirochaeta thermophila DSM 6192]
gi|339412331|gb|AEJ61896.1| RNP-1 like RNA-binding protein [Spirochaeta thermophila DSM 6578]
Length = 101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
++Y G+++++ EDT+RQ F +G ++S+ + D + KGF FVE EA + ++
Sbjct: 2 SFKIYAGNLNYQTTEDTLRQLFEQYGEVESVKIITDRDSGFSKGFGFVEMASEEAGEAAI 61
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPS 129
+N + GR ++V+ H + GR S
Sbjct: 62 SALNQHEVDGRQLRVNKAHERGGRSS 87
>gi|147867424|emb|CAN83272.1| hypothetical protein VITISV_001132 [Vitis vinifera]
Length = 408
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++V +SF E T+R AF FG + + + D I+++ KG+AF+EY EAA +L++
Sbjct: 317 KLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYSTEEAASAALKE 376
Query: 106 MNGVMLGGRNIKV 118
MNG ++ G I V
Sbjct: 377 MNGKIINGWMIVV 389
>gi|302343499|ref|YP_003808028.1| RNP-1 like RNA-binding protein [Desulfarculus baarsii DSM 2075]
gi|301640112|gb|ADK85434.1| RNP-1 like RNA-binding protein [Desulfarculus baarsii DSM 2075]
Length = 89
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++SF ED++R F +G ++S+ + D T + +GF FVE D +AA+ ++ +
Sbjct: 5 IYVGNLSFHSTEDSVRNLFEQYGAVQSVKVITDQETGRSRGFGFVEMD-SDAAENAIRAL 63
Query: 107 NGVMLGGRNIKVH 119
NG L GR +KV+
Sbjct: 64 NGADLDGRALKVN 76
>gi|296223620|ref|XP_002757701.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Callithrix
jacchus]
gi|403260488|ref|XP_003922703.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 375
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 249 ESAAHAIVSVNGTTIEGHVVKCYW 272
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
>gi|380816028|gb|AFE79888.1| nucleolysin TIA-1 isoform p40 isoform 1 [Macaca mulatta]
gi|383421175|gb|AFH33801.1| nucleolysin TIA-1 isoform p40 isoform 1 [Macaca mulatta]
Length = 375
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 249 ESAAHAIVSVNGTTIEGHVVKCYW 272
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
>gi|148666754|gb|EDK99170.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_d
[Mus musculus]
Length = 385
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 94 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 153
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 154 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNC 213
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 214 TVYCGGVTSGLTEQLMR 230
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 14 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAAL 73
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 74 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 119
Query: 164 DIK 166
DIK
Sbjct: 120 DIK 122
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++FV + E+A ++ +
Sbjct: 215 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 268
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 269 NGTTIEGHVVKCYW 282
>gi|426335862|ref|XP_004029425.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Gorilla gorilla gorilla]
Length = 353
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 10 CCIVVTKCTYPFLSTPLYDLKQVGPIT--PDVNSNSPLRVYVGSISFELKEDTIRQAFLP 67
C +++ + + +TP K T S V+VG +S E+ + I+ AF P
Sbjct: 36 CKMIMDEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP 95
Query: 68 FGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGR 127
FG I + D T K KG+ FV + A+ +++QM G LGGR I+ ++ +
Sbjct: 96 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 155
Query: 128 PSNMPQA---QSVIDEITEEAKLYN-RIYVASIHPDLTEEDIK 166
P + ++ Q DE+ ++ N +Y + LTE+ ++
Sbjct: 156 PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMR 198
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 173 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 226
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 227 ESAAHAIVSVNGTTIEGHVVKCYW 250
>gi|344283909|ref|XP_003413713.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Loxodonta
africana]
Length = 375
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 249 ESAAHAIVSVNGTTIEGHVVKCYW 272
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
>gi|321462371|gb|EFX73395.1| hypothetical protein DAPPUDRAFT_307711 [Daphnia pulex]
Length = 313
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWD-PITQKHKGFAFVEYDIPEAA 99
+N+ +YVG + E E +R AF+PFG I +I + D +KH+GF+F+EY++ E A
Sbjct: 4 NNAKRNIYVGGLPDEADESVVRAAFIPFGEIVNIEIPPDYENHEKHRGFSFIEYELAEDA 63
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
+++ MN L G+ I V+ + RP + + S
Sbjct: 64 AAAIDNMNDSELFGKTITVN-----IARPRKIKEGYS 95
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I + + + F G ++ + +D T++ + FAFV E AQ ++E+
Sbjct: 74 RLYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQAAIEK 133
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYN---RIYVASIHPDLTE 162
MNG +GGR IKV+ + P S ++ +TEEA+ + ++YV ++ +T
Sbjct: 134 MNGTEIGGRVIKVNI--------TEKPLDVSGLNRLTEEAEFIDSPYKVYVGNLAKAVTT 185
Query: 163 EDIK 166
E +K
Sbjct: 186 ETLK 189
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+SP +VYVG+++ + +T+++ F G + ++ P T K G+ FV + +
Sbjct: 169 DSPYKVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEA 228
Query: 102 SLEQMNGVMLGGRNIKVH 119
++ N V+L G+ ++V+
Sbjct: 229 AISAFNNVVLEGKPMRVN 246
>gi|393903982|gb|EFO15894.2| cleavage stimulation factor [Loa loa]
Length = 337
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
P S V+VG+IS+E+ E+ ++Q F GP+ + + D T K KG+ F EY+
Sbjct: 17 APSATDRSARSVFVGNISYEVGEEQLKQVFAQVGPVVHLRLVHDRDTGKPKGYGFCEYND 76
Query: 96 PEAAQLSLEQMNGVMLGGRNIKV 118
+ A+ ++ +NG L GR ++V
Sbjct: 77 AQTAESAIRNLNGFELNGRPLRV 99
>gi|312094880|ref|XP_003148175.1| cleavage stimulation factor [Loa loa]
Length = 334
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
P S V+VG+IS+E+ E+ ++Q F GP+ + + D T K KG+ F EY+
Sbjct: 17 APSATDRSARSVFVGNISYEVGEEQLKQVFAQVGPVVHLRLVHDRDTGKPKGYGFCEYND 76
Query: 96 PEAAQLSLEQMNGVMLGGRNIKV 118
+ A+ ++ +NG L GR ++V
Sbjct: 77 AQTAESAIRNLNGFELNGRPLRV 99
>gi|58803060|gb|AAW82658.1| cyclophilin [Haemonchus contortus]
Length = 324
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N +YVG E+ E + AF+ FG I +I++ D T KH+GF FVE+++ E A
Sbjct: 9 NKKRTLYVGGFGEEVTEKVLMAAFITFGDIVAISIPMDYETGKHRGFGFVEFELAEDAAA 68
Query: 102 SLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+ +F
Sbjct: 69 AIDNMNESELFGRTIRCNF 87
>gi|188219593|ref|NP_071320.2| nucleolysin TIA-1 isoform p40 isoform 1 [Homo sapiens]
gi|114577932|ref|XP_001141475.1| PREDICTED: uncharacterized protein LOC459303 isoform 1 [Pan
troglodytes]
gi|397521826|ref|XP_003830987.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Pan paniscus]
gi|119620229|gb|EAW99823.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_a [Homo sapiens]
gi|410254976|gb|JAA15455.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410298558|gb|JAA27879.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410353837|gb|JAA43522.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 375
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 249 ESAAHAIVSVNGTTIEGHVVKCYW 272
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
>gi|357635456|ref|ZP_09133334.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|386393392|ref|ZP_10078173.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
gi|357584010|gb|EHJ49343.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|385734270|gb|EIG54468.1| RRM domain-containing RNA-binding protein [Desulfovibrio sp. U5L]
Length = 98
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++ F ED IR F +G ++S+N+ D T + +GF FVE E A ++E
Sbjct: 4 KLYVGNLPFSTNEDEIRDMFSAYGEVQSVNLIVDRETGRLRGFGFVEM-TTEGADAAMEA 62
Query: 106 MNGVMLGGRNIKVH 119
+NG GGR+++++
Sbjct: 63 LNGKAFGGRDLRIN 76
>gi|148666756|gb|EDK99172.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_f
[Mus musculus]
Length = 375
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++FV + E+A ++ +
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 258
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 259 NGTTIEGHVVKCYW 272
>gi|255760009|ref|NP_001157550.1| nucleolysin TIA-1 isoform 2 [Mus musculus]
gi|28386187|gb|AAH46812.1| Tia1 protein [Mus musculus]
Length = 377
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 86 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 145
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 146 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNC 205
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 206 TVYCGGVTSGLTEQLMR 222
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAAL 65
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 66 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 111
Query: 164 DIK 166
DIK
Sbjct: 112 DIK 114
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++FV + E+A ++ +
Sbjct: 207 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 260
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 261 NGTTIEGHVVKCYW 274
>gi|58267808|ref|XP_571060.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112313|ref|XP_775132.1| hypothetical protein CNBE4060 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257784|gb|EAL20485.1| hypothetical protein CNBE4060 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227294|gb|AAW43753.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 615
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 9/105 (8%)
Query: 19 YPFLSTPLYDLKQVGP-ITPDVNSNSPL---RVYVGSISFELKEDTIRQAFLPFGPIKSI 74
YP LST L + P + PD + ++ + R++V +++F L D +RQ F PFG I+ +
Sbjct: 359 YPPLSTGL----ALPPGLDPDAHKDAAIPYHRLFVSNLAFSLTADDVRQVFEPFGEIEFV 414
Query: 75 NMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119
++ D ++ KG A+V++ ++AQ++L+ M G L GR IKV
Sbjct: 415 DLHTD-LSGLRKGTAYVQFKDVKSAQMALDAMAGFDLAGRLIKVQ 458
>gi|194332974|ref|YP_002014834.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
gi|194310792|gb|ACF45187.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
Length = 90
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +Y+G++ + + ED +R+AF FG + S N+ D + + KGF FVE E A+ +++
Sbjct: 1 MNIYIGNLPYNITEDDLREAFNEFGQVDSANIIIDKFSGRSKGFGFVEMPNDEDAEKAID 60
Query: 105 QMNGVMLGGRNIKVH 119
+N GR IKV+
Sbjct: 61 SLNDTDFNGRTIKVN 75
>gi|426223384|ref|XP_004005855.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Ovis aries]
Length = 375
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 249 ESAAHAIVSVNGTTIEGHVVKCYW 272
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
>gi|449525960|ref|XP_004169984.1| PREDICTED: uncharacterized LOC101208465 [Cucumis sativus]
Length = 394
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++ +SF E T+R AF FG + + + D I+++ KG+AFVEY EAA +L++
Sbjct: 307 KLFITGLSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKE 366
Query: 106 MNGVMLGGRNIKV 118
MNG ++ G I V
Sbjct: 367 MNGKIINGWMIVV 379
>gi|388505224|gb|AFK40678.1| unknown [Lotus japonicus]
Length = 187
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV +SF E+++R F FG + +N+ D + + +GFAF+ Y E +Q ++E
Sbjct: 95 RLYVSGLSFRTTEESLRNCFKNFGQLVDVNLVMDKLANRPRGFAFLRYATEEESQKAIEG 154
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
M+G L GR I V+V +P
Sbjct: 155 MHGKFLDGRVI-----FVEVAKP 172
>gi|168034546|ref|XP_001769773.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678882|gb|EDQ65335.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 134
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 43 SPLRVYVGS-ISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
S ++++G+ +++ E+T+R AF FG + + + D T + +GF FV + PE A++
Sbjct: 43 SSSKLFIGAGLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEV 102
Query: 102 SLEQMNGVMLGGRNIKVHFP 121
+L++M+G L GR I+V +
Sbjct: 103 ALQEMDGRELAGRQIRVDYA 122
>gi|225464121|ref|XP_002264164.1| PREDICTED: uncharacterized protein LOC100265361 [Vitis vinifera]
Length = 409
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++V +SF E T+R AF FG + + + D I+++ KG+AF+EY EAA +L++
Sbjct: 318 KLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 377
Query: 106 MNGVMLGGRNIKV 118
MNG ++ G I V
Sbjct: 378 MNGKIINGWMIVV 390
>gi|17553656|ref|NP_499734.1| Protein CPF-2 [Caenorhabditis elegans]
gi|3877650|emb|CAB05746.1| Protein CPF-2 [Caenorhabditis elegans]
Length = 336
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N S V+VG+IS+++ EDTIR F G + SI M D T K KG+ F+E+ + A
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTA 72
Query: 100 QLSLEQMNGVMLGGRNIKV 118
++++ +NG L GR ++V
Sbjct: 73 EVAIRNLNGYELSGRILRV 91
>gi|406896127|gb|EKD40506.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 92
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+++YVG++S+E+ E ++Q F FG + S ++ D + + KGF FVE D AQ ++E
Sbjct: 1 MKLYVGNLSYEISESDLKQMFEEFGKVGSASIIMDKYSGQSKGFGFVEMDSQTEAQSAME 60
Query: 105 QMNGVMLGGRNIKVH 119
+NG + GR + V+
Sbjct: 61 ALNGKDVKGRTLIVN 75
>gi|322705004|gb|EFY96593.1| splicing factor 3b subunit 4 [Metarhizium anisopliae ARSEF 23]
Length = 383
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G+I TI + L GPI +I+M D +TQ H+GF FVE+ P A+ + M
Sbjct: 15 IYIGNIDERATTATIYEIMLQMGPIHNIHMPRDRVTQNHQGFGFVEFRTPSDAEYAANVM 74
Query: 107 NGVMLGGRNIKVH 119
NG+ L G++++V+
Sbjct: 75 NGIKLFGKSLRVN 87
>gi|225433902|ref|XP_002265598.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E [Vitis vinifera]
gi|297743796|emb|CBI36679.3| unnamed protein product [Vitis vinifera]
Length = 173
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 42 NSPLR---VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N P++ +YVG ++ E+ E + AF+PFG IK + D TQKH+ F FV + E
Sbjct: 2 NQPVQKNTLYVGGLAEEVNESILHSAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKED 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHF 120
A +++ M+G L GR + V++
Sbjct: 62 AAAAMDNMDGAELYGRVLTVNY 83
>gi|378731264|gb|EHY57723.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 562
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F + E ++ F PFG ++ + + D T + +G+ FV++ P A+ +LE+
Sbjct: 269 RLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEK 327
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 328 MNGFDLAGRPIRV 340
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 30 KQVGPITPDVNSNSPLR----VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
K+V TP+ R V+V ++ L+ + Q F GP+K + D ++ +
Sbjct: 150 KRVKSKTPEPQLTEDERDRRTVFVQQLAARLRTKELIQFFEKAGPVKEAQIVKDRVSGRS 209
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEA 145
KG +VE+ E+ L++ QM G L G I + R + P+A + +
Sbjct: 210 KGVGYVEFKNEESVPLAI-QMTGQKLLGIPIIAQLTEAEKNRQARNPEASTS----HHNS 264
Query: 146 KLYNRIYVASIHPDLTEEDIK 166
++R+YV +IH +TE+D++
Sbjct: 265 VPFHRLYVGNIHFSITEQDLQ 285
>gi|313245429|emb|CBY40163.1| unnamed protein product [Oikopleura dioica]
Length = 94
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+ H+GFAFVEY A +++ M
Sbjct: 9 LYVGGLAEEVDEKMVHAAFIPFGDIIDITVPLDFETEAHRGFAFVEYKETGDAASAMDNM 68
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNM 131
+ L GR +KV+ + RP M
Sbjct: 69 DDAELFGRTLKVN-----IARPIKM 88
>gi|452986581|gb|EME86337.1| hypothetical protein MYCFIDRAFT_97432, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 540
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F + ED ++ F PFG ++ + + + + KG+ FV++ P A+ +LE+
Sbjct: 258 RLYVGNIHFSITEDDLKNVFEPFGELEFVQLQKEE-AGRSKGYGFVQFIDPAQAKEALEK 316
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 317 MNGFELAGRPIRV 329
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L+ +++ F G + + D ++ + KG +VE+ E+ Q ++ Q+
Sbjct: 160 VFVQQLAARLRSRELKEFFQQVGDVVDAQIVKDRVSGRSKGVGYVEFKEEESVQKAI-QL 218
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL-YNRIYVASIHPDLTEEDI 165
G L G I + R QA++ T+ + ++R+YV +IH +TE+D+
Sbjct: 219 TGQKLLGIPIIAQLTEAEKNR-----QARNTEGTATQSNGIPFHRLYVGNIHFSITEDDL 273
Query: 166 K 166
K
Sbjct: 274 K 274
>gi|452845447|gb|EME47380.1| hypothetical protein DOTSEDRAFT_69347 [Dothistroma septosporum
NZE10]
Length = 607
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F + ED ++ F PFG ++ + + + + KG+ FV++ P A+ +LE+
Sbjct: 321 RLYVGNIHFSITEDDLKNVFEPFGELEFVQLQKEE-AGRSKGYGFVQFIDPTQAKEALEK 379
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 380 MNGFELAGRPIRV 392
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P P + V+V ++ L+ +++ F GP+ + D ++ + KG +VE+
Sbjct: 210 PAEPTDDERDRRTVFVQQLAARLRSRELKEFFEQAGPVVDAQIVKDRVSGRSKGVGYVEF 269
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL-YNRIY 152
E+ Q ++ + G L G I + R QA++ T+ + ++R+Y
Sbjct: 270 KEEESVQKAI-ALTGQKLLGIPIIAQLTEAEKNR-----QARNTEGTATQSNGIPFHRLY 323
Query: 153 VASIHPDLTEEDIK 166
V +IH +TE+D+K
Sbjct: 324 VGNIHFSITEDDLK 337
>gi|449446458|ref|XP_004140988.1| PREDICTED: uncharacterized protein LOC101208465 [Cucumis sativus]
Length = 394
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++ +SF E T+R AF FG + + + D I+++ KG+AFVEY EAA +L++
Sbjct: 307 KLFITGLSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKE 366
Query: 106 MNGVMLGGRNIKV 118
MNG ++ G I V
Sbjct: 367 MNGKIINGWMIVV 379
>gi|124513200|ref|XP_001349956.1| splicing factor, putative [Plasmodium falciparum 3D7]
gi|23615373|emb|CAD52364.1| splicing factor, putative [Plasmodium falciparum 3D7]
Length = 864
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 34 PITPDVNSNSPLRVYVGSISFELK---EDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
PI P+ + PL++Y+G + L E ++Q F PFG I + + DP T K KGF F
Sbjct: 578 PIDPN---DIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGF 634
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
+++ A +L MNG+ + GR IKV +
Sbjct: 635 IQFHKASEAIEALTVMNGMEVAGREIKVGY 664
>gi|88811230|ref|ZP_01126486.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
gi|88791769|gb|EAR22880.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
Length = 94
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++ F ED +R+ F +G + S+ + D T + +GF FV +AA ++E +
Sbjct: 4 IYVGNLPFSASEDELRELFAAYGNVDSVRLMTDRDTGRPRGFGFVTMSDTDAAS-AIEAL 62
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQ 133
+G GGRN++V+ + RPS P+
Sbjct: 63 DGKDFGGRNLRVNEAQERKERPSGGPR 89
>gi|398407631|ref|XP_003855281.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
gi|339475165|gb|EGP90257.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
Length = 598
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F ++E +R F PFG ++ + + + T + KG+ FV++ + A+++LE+
Sbjct: 312 RLYVGNIHFSIEESDLRDVFEPFGELEFVQLQKED-TGRSKGYGFVQFAKSDEAKIALEK 370
Query: 106 MNGVMLGGRNIKV 118
MNG + GR I+V
Sbjct: 371 MNGFEVAGRPIRV 383
Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L+ ++ F GP+ + D ++ + KG +VE+ E+ Q +LE +
Sbjct: 214 VFVQQLAAALRTKQLKAFFEQSGPVVEAQIVKDRVSGRSKGVGYVEFADEESVQKALE-L 272
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G L I V + R + + Q ++R+YV +IH + E D++
Sbjct: 273 TGQKLMNIPIIVQLTEAEKNRQARTSEGQPT----QSNGIPFHRLYVGNIHFSIEESDLR 328
>gi|354568550|ref|ZP_08987714.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353540273|gb|EHC09750.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 106
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 48/73 (65%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++S++++E+ +R+ F +G +K + + D T + +GFAFVE E + ++E +
Sbjct: 3 IYVGNLSYQVREEDLREVFAEYGTVKKVQLPTDRDTGRVRGFAFVEMQSDEEEERAIEAL 62
Query: 107 NGVMLGGRNIKVH 119
+G GR++KV+
Sbjct: 63 DGAEWMGRDLKVN 75
>gi|390949102|ref|YP_006412861.1| RRM domain-containing RNA-binding protein [Thiocystis violascens
DSM 198]
gi|390425671|gb|AFL72736.1| RRM domain-containing RNA-binding protein [Thiocystis violascens
DSM 198]
Length = 90
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++++ + ++ +R AF +G I S+N+ D T KGF FVE A +++
Sbjct: 1 MNIYVGNLAYGVTQEELRDAFGAYGEISSVNLITDKFTGDSKGFGFVEMPNNAEADAAIK 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPSNMPQ 133
+N L GRN+KV+ + RPS P+
Sbjct: 61 GLNETPLKGRNLKVNQAKPRGERPSRGPR 89
>gi|226498016|ref|NP_001151732.1| RNA binding protein [Zea mays]
gi|195649405|gb|ACG44170.1| RNA binding protein [Zea mays]
Length = 147
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + + R+YV +SF E ++R AF FG + + + D + ++ +GFAF+ Y
Sbjct: 57 PSTSHGAATRLYVSGLSFRTTERSLRDAFEKFGDLTEVCLVMDRVAKRPRGFAFLSYTGE 116
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQV 125
E A+ ++E M+G L GR I V +V
Sbjct: 117 EEARGAMEGMHGKFLDGRVIFVEVAKRRV 145
>gi|89272716|emb|CAJ83609.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
Length = 389
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+ S V+VG +S E+ D I+ AF PFG I + D T K KG+ FV +
Sbjct: 100 LRSQDHFHVFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWD 159
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVA 154
A+ ++ QM G LGGR I+ ++ + P + ++ Q +E+ ++ N +Y
Sbjct: 160 AENAIAQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLTYEEVVNQSSPSNCTVYCG 219
Query: 155 SIHPDLTEEDIK 166
+ LTE+ ++
Sbjct: 220 GVTSGLTEQLMR 231
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP KS M D T + + FVE+ A SL
Sbjct: 6 PRTLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAASL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + + + SV+ + + + ++V + P++T +
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDA-NSSSVVSTLRSQDHFH--VFVGDLSPEITTD 120
Query: 164 DIK 166
DIK
Sbjct: 121 DIK 123
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I + + D KG++FV +
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPD------KGYSFVRFSSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|323650232|gb|ADX97202.1| cold-inducible RNA-binding protein [Perca flavescens]
Length = 80
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SF+ E+++ AF FG I+ +++ D T +GF FV+Y+ E A+ ++E
Sbjct: 3 KLFIGGLSFDTTEESLAAAFGKFGTIEKVDVIKDRDTGYSRGFGFVKYENSEDAKDAMEG 62
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 63 MNGKTLDGRAIRV 75
>gi|58865762|ref|NP_001012096.1| TIA1 cytotoxic granule-associated RNA binding protein [Rattus
norvegicus]
gi|56268852|gb|AAH87064.1| TIA1 cytotoxic granule-associated RNA binding protein [Rattus
norvegicus]
gi|149036619|gb|EDL91237.1| rCG56007, isoform CRA_c [Rattus norvegicus]
Length = 375
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++F+ + E+A ++ +
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSV 258
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 259 NGTTIEGHVVKCYW 272
>gi|325970873|ref|YP_004247064.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
gi|324026111|gb|ADY12870.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
Length = 90
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++S+ E+ +R F +G + S N+ D T++ KGF FVE + AA ++ Q
Sbjct: 4 KIYVGNMSYNTSEEELRDLFAQYGTVLSANIIIDRETRRPKGFGFVEMEDDSAAIAAISQ 63
Query: 106 MNGVMLGGRNIKVH 119
++G GGRN++V+
Sbjct: 64 LDGQDFGGRNLRVN 77
>gi|302421316|ref|XP_003008488.1| splicing factor 3B subunit 4 [Verticillium albo-atrum VaMs.102]
gi|261351634|gb|EEY14062.1| splicing factor 3B subunit 4 [Verticillium albo-atrum VaMs.102]
Length = 295
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY+G+I + + L GPI +I+M D +TQ H+GF FVE+ P A+ + M
Sbjct: 68 VYIGNIDERATSTMVYEIMLQMGPIHNIHMPRDRVTQTHQGFGFVEFRTPSDAEYAANVM 127
Query: 107 NGVMLGGRNIKVH 119
NGV L G++++V+
Sbjct: 128 NGVKLYGKSLRVN 140
>gi|45361397|ref|NP_989276.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
gi|39795756|gb|AAH64164.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
Length = 386
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+ S V+VG +S E+ D I+ AF PFG I + D T K KG+ FV +
Sbjct: 100 LRSQDHFHVFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWD 159
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVA 154
A+ ++ QM G LGGR I+ ++ + P + ++ Q +E+ ++ N +Y
Sbjct: 160 AENAIAQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLTYEEVVNQSSPSNCTVYCG 219
Query: 155 SIHPDLTEEDIK 166
+ LTE+ ++
Sbjct: 220 GVTSGLTEQLMR 231
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP KS M D T + + FVE+ A SL
Sbjct: 6 PRTLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAASL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + + + SV+ + + + ++V + P++T +
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDA-NSSSVVSTLRSQDHFH--VFVGDLSPEITTD 120
Query: 164 DIK 166
DIK
Sbjct: 121 DIK 123
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I + + D KG++FV +
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPD------KGYSFVRFSSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|449452837|ref|XP_004144165.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Cucumis
sativus]
gi|449529401|ref|XP_004171688.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Cucumis
sativus]
Length = 171
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG IK + D TQKH+ F FV + E A +++ M
Sbjct: 10 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNM 69
Query: 107 NGVMLGGRNIKVHF 120
+G L GR + V++
Sbjct: 70 DGAELYGRVLTVNY 83
>gi|189233691|ref|XP_969160.2| PREDICTED: similar to AGAP005292-PA [Tribolium castaneum]
Length = 358
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 38 DVNSNSPL--------RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
+ NSN+P ++VG +S E++ T+R+AF FG I + DP T K KG+
Sbjct: 36 NQNSNTPSSNNKAEHHHIFVGDLSPEIETQTLREAFAAFGEISDCRVVRDPQTLKSKGYG 95
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV-IDEITEEAKLY 148
FV + A+ ++ MNG LG R+I+ ++ + P + ++ + DEI ++
Sbjct: 96 FVSFIKKAEAESAINAMNGQWLGSRSIRTNWATRKPPAPKSEANSKPMSFDEIYNQSSAT 155
Query: 149 N-RIYVASIHPDLTEEDIK 166
N +Y I L E+ ++
Sbjct: 156 NCTVYCGGITNGLCEDLLQ 174
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G I+ L ED +++ FLP+G I+ I + K KG+AF+ + E+A ++ +
Sbjct: 159 VYCGGITNGLCEDLLQKTFLPYGIIQEIRVF------KEKGYAFIRFSTKESATHAIVGV 212
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVI 138
+ +GG+ +K + + G P+N P A +
Sbjct: 213 HNSEIGGQTVKCSWGK-ESGDPNNAPAASQAL 243
>gi|147902038|ref|NP_001087561.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
laevis]
gi|51261513|gb|AAH80105.1| MGC84540 protein [Xenopus laevis]
Length = 389
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+ S V+VG +S E+ D I+ AF PFG I + D T K KG+ FV +
Sbjct: 100 LRSQDHFHVFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWD 159
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVA 154
A+ ++ QM G LGGR I+ ++ + P + ++ Q +E+ ++ N +Y
Sbjct: 160 AENAIAQMGGQWLGGRQIRTNWATRKPPAPKSTYESNAKQLTYEEVVNQSSPSNCTVYCG 219
Query: 155 SIHPDLTEEDIK 166
+ LTE+ ++
Sbjct: 220 GVTSGLTEQLMR 231
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP KS M D T + + FVE+ A SL
Sbjct: 6 PRTLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAASL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
+NG + G+ +KV++ + + + SV+ + + + ++V + P++T +
Sbjct: 64 AAINGRKIMGKEVKVNWATTPSSQKKDA-NSSSVVSTLRSQDHFH--VFVGDLSPEITTD 120
Query: 164 DIK 166
DIK
Sbjct: 121 DIK 123
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I + + D KG++FV +
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPD------KGYSFVRFSSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF---------PHVQVGRPSNM 131
E+A ++ +NG + G +K ++ P QV PS +
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYWGKETPDMLNPVQQVSEPSQI 303
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY+ + EL +D IR+ F PFG I S + D I K +GF FV Y+ PEAA+ +++ +
Sbjct: 193 VYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIG-KSRGFGFVSYEEPEAAEKAVDNL 251
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
NG+ LGG + + GR + Q+ + + E+ K+
Sbjct: 252 NGMELGGGKV------LYAGRAQKKAERQAELKDKFEKIKM 286
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG + ++ E + + F GP+ SI + D IT++ G+A+V + P A+ +L+ M
Sbjct: 13 LYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 107 NGVMLGGRNIKV 118
N + GR I++
Sbjct: 73 NFDTIKGRPIRI 84
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + + V++ ++ + + F FG I S ++ D KG+ FV ++
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIASD--ENGSKGYGFVHFETE 148
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASI 156
EAA+ ++E++NG++L G+ V VG+ +P+ + I + ++ K +N +Y+ +
Sbjct: 149 EAARQAIEKVNGMLLNGKK-------VYVGK--FIPRKER-IALLGDKMKRFNNVYIKNF 198
Query: 157 HPDLTEEDIK 166
+L ++ I+
Sbjct: 199 GDELDDDKIR 208
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+N + +YV ++ + ++ +R+ F FG I S + + + KGF FV + PE
Sbjct: 289 INRYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSE--GGRSKGFGFVCFSSPEE 346
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
A ++ +MNG ++ + + V + R +++
Sbjct: 347 ATKAVTEMNGRIIVSKPLYVALAQRKEDRRAHL 379
>gi|291287189|ref|YP_003504005.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884349|gb|ADD68049.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
Length = 94
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S+ ED + + F G + S + D T + KGF FVE E A+ ++E
Sbjct: 1 MNIYVGNLSYTSSEDELFELFENMGQVDSARIITDRDTGRSKGFGFVEMADAEQAKAAIE 60
Query: 105 QMNGVMLGGRNIKVH 119
Q+NG GGRN+ V+
Sbjct: 61 QLNGTEFGGRNLTVN 75
>gi|410340767|gb|JAA39330.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340769|gb|JAA39331.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340771|gb|JAA39332.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340773|gb|JAA39333.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340775|gb|JAA39334.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340777|gb|JAA39335.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+ +++VG ++F E + F FGPI + + D TQ+ +GF F+ + IPE A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFPIPEHAS 61
Query: 101 LSLEQMNGVMLGGRNIKV 118
+++ MNG L GR I+V
Sbjct: 62 VAMRAMNGESLDGRQIRV 79
>gi|388583201|gb|EIM23503.1| hypothetical protein WALSEDRAFT_67167 [Wallemia sebi CBS 633.66]
Length = 89
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+N NS ++Y+ ++S+ ++ + +AF PFG I + D T + +GF FV Y
Sbjct: 1 MNDNS--KIYISNLSWSTNDEDLARAFSPFGQISDYIVMKDRQTGRSRGFGFVTYANDRE 58
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQ 124
A +LE MN V L GR I+V++ H +
Sbjct: 59 ASSALESMNEVELDGRRIRVNYAHAR 84
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S+ + E +R+ F FG + + D T + KGF FVE E A+ ++E
Sbjct: 2 INIYVGNLSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIE 61
Query: 105 QMNGVMLGGRNIKVH 119
NG +GGR ++V+
Sbjct: 62 GTNGKEVGGRALRVN 76
>gi|357442985|ref|XP_003591770.1| RNA-binding protein [Medicago truncatula]
gi|355480818|gb|AES62021.1| RNA-binding protein [Medicago truncatula]
Length = 284
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++V +SF E T+R AF FG + + + D I+++ KG+AF+EY EAA +L++
Sbjct: 193 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKE 252
Query: 106 MNGVMLGG 113
MNG ++ G
Sbjct: 253 MNGKIING 260
>gi|449296279|gb|EMC92299.1| hypothetical protein BAUCODRAFT_38330 [Baudoinia compniacensis UAMH
10762]
Length = 634
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F + ED ++ F PFG ++ + + + + KG+ FV++ P A+ +LE+
Sbjct: 347 RLYVGNIHFSITEDDLKNVFEPFGELEFVQLQKEE-QGRSKGYGFVQFIDPAQAKEALEK 405
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 406 MNGFELAGRPIRV 418
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L+ ++ F GP+ + D ++ + KG +VE+ E+ Q ++ Q+
Sbjct: 249 VFVQQLAARLRTKELQAFFEAVGPVVEAQIVKDRVSGRSKGVGYVEFKDEESVQKAI-QL 307
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL-YNRIYVASIHPDLTEEDI 165
G L G I + R QA+ T+ + ++R+YV +IH +TE+D+
Sbjct: 308 TGQKLLGIPIIAQLTEAEKNR-----QARHTEGTATQSNGIPFHRLYVGNIHFSITEDDL 362
Query: 166 K 166
K
Sbjct: 363 K 363
>gi|296087958|emb|CBI35241.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++V +SF E T+R AF FG + + + D I+++ KG+AF+EY EAA +L++
Sbjct: 224 KLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 283
Query: 106 MNGVMLGGRNIKV 118
MNG ++ G I V
Sbjct: 284 MNGKIINGWMIVV 296
>gi|297620951|ref|YP_003709088.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|297376252|gb|ADI38082.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|337293226|emb|CCB91217.1| putative RNA-binding protein rbpA [Waddlia chondrophila 2032/99]
Length = 92
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+++YVG++S+ + ED + F FG + S + D T + KGF FVE+ EAA+ +++
Sbjct: 1 MKLYVGNLSYRVSEDQFKDYFASFGEVLSAKIITDRFTGQSKGFGFVEFADKEAAEEAIK 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRP 128
++NG GR+I V+ RP
Sbjct: 61 ELNGSNFEGRSIVVNEAKPMEDRP 84
>gi|246771225|gb|ACS94937.1| putative glycine-rich RNA-binding protein [Tamarix hispida]
Length = 143
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 34 PITPDVNS---NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
PI +NS S R++VG +S+ + +++ AF FG + + D T + +GF F
Sbjct: 21 PIDSMLNSIRCMSSSRLFVGGLSWGTDDQSLKDAFSSFGEVTDAKVITDRETGRSRGFGF 80
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122
V + EAA +L M+GV L GR+I+V F
Sbjct: 81 VNFVDNEAAGSALSSMDGVELNGRSIRVSFAQ 112
>gi|92429673|gb|ABE77206.1| unknown [Sorghum bicolor]
Length = 240
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I F E + A GP++S+ ++ DP T K +G+AFVEY E A+ + +
Sbjct: 21 VYVGNIPFHASEKEVHDACELIGPVRSLRLAADPGTGKRRGYAFVEYPDDETARSACRNL 80
Query: 107 NGVMLGGRNIKV 118
+G L GR ++V
Sbjct: 81 HGHALRGRELRV 92
>gi|302340505|ref|YP_003805711.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
gi|301637690|gb|ADK83117.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
Length = 88
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 52/83 (62%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++++ +E++++ F +G + S+N+ D T + KGF FVE + +AA+ ++
Sbjct: 4 KIYVGNLNYSTREESLQDLFGQYGQVNSVNIITDRYTGQSKGFGFVEMEEMDAAEAAISA 63
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
++G L GR ++V+ + RP
Sbjct: 64 LDGTSLDGRELRVNEAKERERRP 86
>gi|146422279|ref|XP_001487080.1| hypothetical protein PGUG_00457 [Meyerozyma guilliermondii ATCC
6260]
Length = 229
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D + N +YVG++ ++ E + + + F PI+S+N+ D + H+G+ FVE+ E
Sbjct: 10 DADRNVKATLYVGNLDPQVNEALLYELLIQFAPIRSLNLPKDRVLGTHQGYGFVEFRGIE 69
Query: 98 AAQLSLEQMNGVMLGGRNIKVHF--PHVQ--VGRPSNMPQAQSVIDEITEEAKLYNRIYV 153
A LE + GV L G+++K+ P+ + G SN SV + + AKL +V
Sbjct: 70 DANYVLEILRGVRLYGKSLKLRRADPNSRGAAGTTSNFANNNSVTNAVDVGAKL----FV 125
Query: 154 ASIHPDLTEE 163
++ P + E+
Sbjct: 126 GNLDPLIDEQ 135
>gi|337281471|ref|YP_004620943.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
gi|334732548|gb|AEG94924.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 128
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++ + ++ + QAF FG + S + + T + KGF FVE P AQ ++E
Sbjct: 4 KLYVGNLPYSYRDSDMEQAFSQFGTVSSAKVMMERDTGRSKGFGFVEMSSPAEAQAAIEG 63
Query: 106 MNGVMLGGRNIKVH 119
MNG +GGR + V+
Sbjct: 64 MNGQQIGGRGLVVN 77
>gi|442621490|ref|NP_001097951.2| CG34362, isoform B, partial [Drosophila melanogaster]
gi|440217976|gb|AAF56772.4| CG34362, isoform B, partial [Drosophila melanogaster]
Length = 792
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 460 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 519
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 520 AMNGQWLGSRSIRTNW 535
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSP--LRVYVGSISFEL---KEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 540 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 599
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
D KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 600 KD------KGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSW-GKESGDPNN 645
>gi|223993321|ref|XP_002286344.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977659|gb|EED95985.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 140
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G + + E T+R AFLPFGPI+ I+M D HKGFAF+E+ + A ++ M
Sbjct: 13 LYIGGLDPAVTETTLRAAFLPFGPIQHIDMPMDYAAGTHKGFAFLEFVEADDANEAIYNM 72
Query: 107 NGVMLGGRNIKVHFPHVQ 124
+G L G+++ V+ +
Sbjct: 73 DGSELFGKSLTVNVAQAE 90
>gi|119358437|ref|YP_913081.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119355786|gb|ABL66657.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +Y+G++ +++ ED +R AF FG + S N+ D + + KGF FV+ + A+ ++E
Sbjct: 1 MNIYIGNLPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVDMPHDDEAREAIE 60
Query: 105 QMNGVMLGGRNIKVH 119
MN L GR IKV+
Sbjct: 61 SMNDKDLKGRTIKVN 75
>gi|442621493|ref|NP_001163754.2| CG34362, isoform D, partial [Drosophila melanogaster]
gi|440217977|gb|ACZ95048.2| CG34362, isoform D, partial [Drosophila melanogaster]
Length = 799
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 460 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 519
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 520 AMNGQWLGSRSIRTNW 535
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSP--LRVYVGSISFEL---KEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 540 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 599
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
D KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 600 KD------KGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSW-GKESGDPNN 645
>gi|108383479|gb|ABF85732.1| IP09238p [Drosophila melanogaster]
Length = 791
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 452 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 511
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 512 AMNGQWLGSRSIRTNW 527
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSP--LRVYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 532 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 591
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
D KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 592 KD------KGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSW-GKESGDPNN 637
>gi|428309319|ref|YP_007120296.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428250931|gb|AFZ16890.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 101
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S+++ E+ IR+ F +G + ++ + D T + +GFAFVE E ++E
Sbjct: 1 MSIYVGNLSYDVTEEDIREVFAEYGTVNNVTLPKDRETGRKRGFAFVEMGTDEEETAAIE 60
Query: 105 QMNGVMLGGRNIKVH 119
++G GRN+KV+
Sbjct: 61 ALDGAEWMGRNLKVN 75
>gi|410924411|ref|XP_003975675.1| PREDICTED: cold-inducible RNA-binding protein-like [Takifugu
rubripes]
Length = 170
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SFE E+++ +AF +G I+ +++ D T + +GF FV+Y+ E A+ ++
Sbjct: 6 KLFIGGLSFETNEESLAEAFGKYGTIEKVDVIRDKETGRSRGFGFVKYESVEDAKDAMTA 65
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 66 MNGKSLDGRAIRV 78
>gi|351714346|gb|EHB17265.1| Nucleolysin TIA-1 isoform p40 [Heterocephalus glaber]
Length = 386
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++FV ++ E+A ++ +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSV 269
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 270 NGTTIEGHVVKCYW 283
>gi|452002199|gb|EMD94657.1| hypothetical protein COCHEDRAFT_1092247 [Cochliobolus
heterostrophus C5]
Length = 572
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQ-KHKGFAFV 91
G P N R+YVG+I F + E +++ F PFG ++ + + D + + KG+ FV
Sbjct: 266 GGTAPGANGAPFHRLYVGNIHFSVTEKDLQEIFEPFGELEQVILQRDEMNPGRSKGYGFV 325
Query: 92 EYDIPEAAQLSLEQMNGVMLGGRNIKV 118
++ P A+ +L +MNG L GR I+V
Sbjct: 326 QFVDPSHAKNALAEMNGFELAGRQIRV 352
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 34 PITPDVNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFV 91
P P++ + + ++V IS + +R F GP+ + D +T + KG +V
Sbjct: 165 PPEPEITEDDRDKRTIFVQQISQRAETRHLRAFFERVGPVVEAQIVKDRVTGRSKGVGYV 224
Query: 92 EY----DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
E+ +P+A +L+ +++ GV + + + + RPS A
Sbjct: 225 EFKDEESVPQALELTGQKLKGVPIIAQLTEAE--KNRAARPSEGGTAPGA------NGAP 276
Query: 148 YNRIYVASIHPDLTEEDIK 166
++R+YV +IH +TE+D++
Sbjct: 277 FHRLYVGNIHFSVTEKDLQ 295
>gi|6755783|ref|NP_035715.1| nucleolysin TIA-1 isoform 1 [Mus musculus]
gi|1729966|sp|P52912.1|TIA1_MOUSE RecName: Full=Nucleolysin TIA-1; AltName: Full=RNA-binding protein
TIA-1; AltName: Full=T-cell-restricted intracellular
antigen-1; Short=TIA-1
gi|437057|gb|AAA03711.1| TIA [Mus musculus]
gi|1616673|gb|AAC52871.1| RNA binding protein TIA-1 [Mus musculus]
gi|26353510|dbj|BAC40385.1| unnamed protein product [Mus musculus]
gi|74188216|dbj|BAE25782.1| unnamed protein product [Mus musculus]
gi|148666751|gb|EDK99167.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_a
[Mus musculus]
Length = 386
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++FV + E+A ++ +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 269
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 270 NGTTIEGHVVKCYW 283
>gi|381206512|ref|ZP_09913583.1| RNA-binding protein [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 85
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG+++F + ED +R AF FG + ++ D + + KGF FVE D ++E
Sbjct: 1 MNIYVGNLAFSVSEDQLRSAFSQFGKVSKASVIMDRVNNRSKGFGFVEMDDAAEGNSAVE 60
Query: 105 QMNGVMLGGRNIKVH 119
+NG + GR KV+
Sbjct: 61 ALNGHQIDGRAWKVN 75
>gi|281346697|gb|EFB22281.1| hypothetical protein PANDA_002889 [Ailuropoda melanoleuca]
Length = 377
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 93 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 152
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 153 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 212
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 213 TSGLTEQLMR 222
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 197 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 250
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 251 ESAAHAIVSVNGTTIEGHVVKCYW 274
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107
YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L MN
Sbjct: 1 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMN 58
Query: 108 GVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTEEDIK 166
G + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T EDIK
Sbjct: 59 GRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 114
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + + P R++VG++ + + + Q F G + + +D +T + +GFAFV
Sbjct: 99 PRSRPTRGDDPGRLFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTM 158
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVG 126
E A +++ +G +LGGR +V++P V G
Sbjct: 159 ATAEEAAKAIQMFDGALLGGRTARVNYPEVPRG 191
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++Y G++ + ++ DT+R F + + ++ T + +GF FV + E AQ +LE
Sbjct: 210 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQAALEA 269
Query: 106 MNGVMLGGRNIKVHFPH 122
++GV L GR +++
Sbjct: 270 LDGVELEGRPLRLSLAE 286
>gi|328715704|ref|XP_001946343.2| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1
[Acyrthosiphon pisum]
Length = 419
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++VG +S E++ T+R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 96 HIFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKKAEAESAIAA 155
Query: 106 MNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 156 MNGQWLGSRSIRTNW 170
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 34 PITPD--VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
P+T D N +SP VY G ++ L ++ +++ F PFG I+ I + K KG+A
Sbjct: 186 PLTFDEVYNQSSPTNCTVYCGGLTSGLTDELVQKTFAPFGNIQEIRVF------KDKGYA 239
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
FV + E+A ++ ++ + G+ +K +
Sbjct: 240 FVRFATKESATHAIVAVHNSDINGQPVKCSW 270
>gi|312070862|ref|XP_003138342.1| hypothetical protein LOAG_02757 [Loa loa]
Length = 648
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N+ PL++YVG + + ED + + F PFG I+++ ++ D ++ KG+A+V + +
Sbjct: 372 NTTGPLKLYVGQLHTSITEDMLGRIFDPFGKIENLEIATD-LSGVSKGYAYVTFRHADDG 430
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ ++EQMNG L GR +KV
Sbjct: 431 KRAMEQMNGFELAGRPMKV 449
>gi|82595543|ref|XP_725893.1| splicing factor [Plasmodium yoelii yoelii 17XNL]
gi|23481068|gb|EAA17458.1| putative splicing factor [Plasmodium yoelii yoelii]
Length = 698
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 34 PITPDVNSNSPLRVYVGSISFELK---EDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
PI P+ + PL++Y+G + L E ++Q F PFG I + + DP T K KGF F
Sbjct: 409 PIDPN---DIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGF 465
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
+++ A ++ MNG+ + GR IKV +
Sbjct: 466 IQFHKASEAIEAMTVMNGMEVAGREIKVSY 495
>gi|344283907|ref|XP_003413712.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Loxodonta
africana]
Length = 386
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|222629430|gb|EEE61562.1| hypothetical protein OsJ_15917 [Oryza sativa Japonica Group]
Length = 149
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + + R+YV +SF E+++R AF FG + +N+ + + ++ +GFAF+ Y
Sbjct: 59 PSASHGAASRLYVSGLSFRTTEESLRNAFERFGQLTEVNLVMERVAKRPRGFAFLSYASE 118
Query: 97 EAAQLSLEQMNGVMLGGRNIKV 118
E ++ ++E M G L GR I V
Sbjct: 119 EESKNAMEGMQGKFLDGRVIFV 140
>gi|346322787|gb|EGX92385.1| splicing factor 3b subunit 4 [Cordyceps militaris CM01]
Length = 404
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G+I T+ + L GPI +I+M D +TQ H+GF FVE+ P A+ + M
Sbjct: 15 IYMGNIDERATPATMYEIMLQMGPIHNIHMPRDRVTQSHQGFGFVEFRTPSDAEYAAAVM 74
Query: 107 NGVMLGGRNIKVH 119
NGV L G++++V+
Sbjct: 75 NGVKLYGKSLRVN 87
>gi|225713880|gb|ACO12786.1| Nucleolysin TIAR [Lepeophtheirus salmonis]
Length = 352
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P +++ ++VG +S ++ +T++ F+PFG I + D +T K KG+ FV +
Sbjct: 100 PKPDTSQHHHIFVGDLSPDITTETLKNVFVPFGEISDYKVVKDMLTNKSKGYGFVSFVEK 159
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
AQ ++EQMNG LG R I+ ++
Sbjct: 160 NDAQTAIEQMNGQWLGSRAIRTNW 183
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G + E+ IRQ F PFG I I D KG+AFV +D E+A ++ +
Sbjct: 218 VYCGGL-INSDENIIRQTFSPFGRILEIRYFRD------KGYAFVRFDNKESACNAIVAL 270
Query: 107 NGVMLGGRNIKVHF 120
+G + G+++K +
Sbjct: 271 HGSNVQGQSVKCSW 284
>gi|115497910|ref|NP_001069577.1| nucleolysin TIA-1 isoform p40 [Bos taurus]
gi|111308630|gb|AAI20428.1| TIA1 cytotoxic granule-associated RNA binding protein [Bos taurus]
gi|296482421|tpg|DAA24536.1| TPA: TIA1 cytotoxic granule-associated RNA binding protein [Bos
taurus]
Length = 384
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|288940038|ref|YP_003442278.1| RNP-1 like RNA-binding protein [Allochromatium vinosum DSM 180]
gi|288895410|gb|ADC61246.1| RNP-1 like RNA-binding protein [Allochromatium vinosum DSM 180]
Length = 91
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++++ + +D +R AF +G I S+N+ D T KGF FVE A +++
Sbjct: 1 MNIYVGNLAYSVTQDELRDAFGAYGEISSVNLITDKFTGSSKGFGFVEMPNNSEADAAIK 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPS 129
+N L GRN+KV+ + RP+
Sbjct: 61 GLNETPLKGRNLKVNQAKPRGERPA 85
>gi|410298560|gb|JAA27880.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 388
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 104 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 163
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 164 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 223
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 224 TSGLTEQLMR 233
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAAL 65
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 66 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 121
Query: 163 EDIK 166
EDIK
Sbjct: 122 EDIK 125
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 208 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 261
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 262 ESAAHAIVSVNGTTIEGHVVKCYW 285
>gi|390439660|ref|ZP_10228043.1| putative RNA-binding protein rbpF [Microcystis sp. T1-4]
gi|389836940|emb|CCI32167.1| putative RNA-binding protein rbpF [Microcystis sp. T1-4]
Length = 97
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++ FE+ ++ + + F +G IK +++ D T+K +GFAFVE + P ++
Sbjct: 1 MSIYVGNLPFEVNQEDVVEVFTEYGKIKRVHLPIDRETKKKRGFAFVEMETPAQESAAIA 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPS 129
+NG GR +KV+ + RPS
Sbjct: 61 ALNGAEWMGRELKVNQAREKEPRPS 85
>gi|170575391|ref|XP_001893221.1| splicing factor, CC1-like family protein [Brugia malayi]
gi|158600898|gb|EDP37951.1| splicing factor, CC1-like family protein [Brugia malayi]
Length = 640
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N+ PL++YVG + + ED + + F PFG I+++ ++ D ++ KG+A+V + +
Sbjct: 363 TNTTGPLKLYVGQLHTSITEDMLGRIFDPFGKIENLEIATD-LSGVSKGYAYVTFRHADD 421
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
+ ++EQMNG L GR +KV
Sbjct: 422 GKRAMEQMNGFELAGRPMKV 441
>gi|395394012|ref|NP_001257443.1| predicted gene, 21693 [Mus musculus]
Length = 380
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+N P ++++G ++ + ++ T+++ F FGP+ + + D T+K +GFAF+ +
Sbjct: 2 AETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
A+ ++++MNGV+L G+ IKV Q RPS++
Sbjct: 62 AKNAVKEMNGVILDGKRIKVK----QARRPSSL 90
>gi|392574247|gb|EIW67384.1| hypothetical protein TREMEDRAFT_33681 [Tremella mesenterica DSM
1558]
Length = 619
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 9/111 (8%)
Query: 13 VVTKCTYPFLSTPLYDLKQVGP-ITPDVNSNSPL---RVYVGSISFELKEDTIRQAFLPF 68
V + +P LS LY + P + D N ++ + R++V +++ L D I+Q F PF
Sbjct: 351 VTYQTRFPPLSNGLY----IPPGVDVDANRDASVPYHRLFVSGLAYSLAADDIKQVFDPF 406
Query: 69 GPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119
G I +++ D +T + KG A+V++ ++AQ +L+ MNG + GR I+V
Sbjct: 407 GQIDFVDLHHD-VTGQSKGTAYVQFHDLKSAQTALDAMNGFEIAGRPIRVQ 456
>gi|255725032|ref|XP_002547445.1| hypothetical protein CTRG_01752 [Candida tropicalis MYA-3404]
gi|240135336|gb|EER34890.1| hypothetical protein CTRG_01752 [Candida tropicalis MYA-3404]
Length = 257
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D NS +Y G+I + E + + F+ FGPIKS+NM D I + H+G+ FVE+ +
Sbjct: 10 DAERNSNASLYFGNIDPQADEILMYELFIQFGPIKSLNMPKDRILKTHQGYGFVEFRNID 69
Query: 98 AAQLSLEQMNGVMLGGRNIKV 118
A+ +L+ + GV L G+ +K+
Sbjct: 70 DAKYTLDILRGVRLFGKALKL 90
>gi|2564280|emb|CAA75403.1| RNA-binding protein [Mus musculus]
Length = 380
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+N P ++++G ++ + ++ T+++ F FGP+ + + D T+K +GFAF+ +
Sbjct: 2 AETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
A+ ++++MNGV+L G+ IKV Q RPS++
Sbjct: 62 AKNAVKEMNGVILDGKRIKVK----QARRPSSL 90
>gi|223995751|ref|XP_002287549.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976665|gb|EED94992.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 76
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+VG+++F E+ + AF G I + M D T K +GFAF+E++ P+AA ++ M
Sbjct: 1 VFVGNLAFSTTEEQLYTAFSELGRIVKVRMVSDNDTGKPRGFAFIEFEDPQAALSAIRNM 60
Query: 107 NGVMLGGRNIKVHFPH 122
N + GR I+V+F +
Sbjct: 61 NDYEINGRRIRVNFSN 76
>gi|395731713|ref|XP_002811971.2| PREDICTED: LOW QUALITY PROTEIN: nucleolysin TIA-1 isoform p40
[Pongo abelii]
Length = 386
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M + T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIME--TAGNDPYCFVEFHDDRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKKMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
>gi|30017481|gb|AAP12903.1| putative peptidyl-prolyl cis-trans isomerase [Oryza sativa Japonica
Group]
gi|108709685|gb|ABF97480.1| Peptidyl-prolyl cis-trans isomerase E, putative, expressed [Oryza
sativa Japonica Group]
gi|125544766|gb|EAY90905.1| hypothetical protein OsI_12520 [Oryza sativa Indica Group]
gi|125587046|gb|EAZ27710.1| hypothetical protein OsJ_11659 [Oryza sativa Japonica Group]
Length = 171
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 42 NSPLR---VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N P++ +YVG ++ E+ E + AF+PFG IK + D TQKH+ F FV + E
Sbjct: 2 NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEIKDVKTPLDQATQKHRSFGFVTFLERED 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHF 120
A +++ M+G L GR + V++
Sbjct: 62 AAAAMDNMDGAELFGRVLTVNY 83
>gi|71024221|ref|XP_762340.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
gi|46101864|gb|EAK87097.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
Length = 475
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 22 LSTPLYDLKQVGPITPDVNSNSPLR-VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP 80
LSTP D+ + + ++P +++G++SF++ ED + AF G + + + DP
Sbjct: 288 LSTPKGDVTENRAKKFNDQRSAPSSTLFIGNLSFDVSEDDVWNAFSEHGEVSGVRLPKDP 347
Query: 81 ITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
+ + KGF +VE+ E+AQ +++ M G L GR +++ F
Sbjct: 348 DSGRPKGFGYVEFAAQESAQAAIDAMTGQELAGRPLRLDF 387
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 63/129 (48%), Gaps = 23/129 (17%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +S+ + D ++ FG + S + D + K +GF +V++ AA+ + ++
Sbjct: 214 QIWVGQLSWNVDNDWLKSEMEVFGEVTSARVQLDRTSGKSRGFGYVDFATAAAAKKAFDE 273
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITE-EAKLYNR--------IYVASI 156
G + GR I++ + P+ ++TE AK +N +++ ++
Sbjct: 274 GQGKEVDGRAIRIDL---------STPKG-----DVTENRAKKFNDQRSAPSSTLFIGNL 319
Query: 157 HPDLTEEDI 165
D++E+D+
Sbjct: 320 SFDVSEDDV 328
>gi|387762942|ref|NP_001248687.1| TIA1 cytotoxic granule-associated RNA binding protein [Macaca
mulatta]
gi|84579193|dbj|BAE73030.1| hypothetical protein [Macaca fascicularis]
gi|355565763|gb|EHH22192.1| hypothetical protein EGK_05415 [Macaca mulatta]
gi|355751389|gb|EHH55644.1| hypothetical protein EGM_04890 [Macaca fascicularis]
gi|380816026|gb|AFE79887.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
gi|383421173|gb|AFH33800.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
gi|384949108|gb|AFI38159.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
Length = 386
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|390474361|ref|XP_003734771.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Callithrix jacchus]
gi|403260486|ref|XP_003922702.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 386
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|195503598|ref|XP_002098718.1| GE23777 [Drosophila yakuba]
gi|194184819|gb|EDW98430.1| GE23777 [Drosophila yakuba]
Length = 543
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 211 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 270
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 271 AMNGQWLGSRSIRTNW 286
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 291 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 350
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
K KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 351 ------KDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGK-ESGDPNN 396
>gi|393910287|gb|EFO25730.2| hypothetical protein LOAG_02757 [Loa loa]
Length = 526
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N+ PL++YVG + + ED + + F PFG I+++ ++ D ++ KG+A+V + +
Sbjct: 250 NTTGPLKLYVGQLHTSITEDMLGRIFDPFGKIENLEIATD-LSGVSKGYAYVTFRHADDG 308
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ ++EQMNG L GR +KV
Sbjct: 309 KRAMEQMNGFELAGRPMKV 327
>gi|218195435|gb|EEC77862.1| hypothetical protein OsI_17125 [Oryza sativa Indica Group]
Length = 152
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + + R+YV +SF E+++R AF FG + +N+ + + ++ +GFAF+ Y
Sbjct: 62 PSASHGAASRLYVSGLSFRTTEESLRNAFERFGQLTEVNLVMERVAKRPRGFAFLSYASE 121
Query: 97 EAAQLSLEQMNGVMLGGRNIKV 118
E ++ ++E M G L GR I V
Sbjct: 122 EESKNAMEGMQGKFLDGRVIFV 143
>gi|73969892|ref|XP_866571.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 9 [Canis lupus
familiaris]
gi|301758208|ref|XP_002914947.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1 [Ailuropoda
melanoleuca]
gi|410954995|ref|XP_003984144.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Felis catus]
gi|431912606|gb|ELK14624.1| Nucleolysin TIA-1 isoform p40 [Pteropus alecto]
Length = 386
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|84579137|dbj|BAE73002.1| hypothetical protein [Macaca fascicularis]
Length = 385
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|345870843|ref|ZP_08822793.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
gi|343921312|gb|EGV32033.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
Length = 90
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++++ + E+ +R AF +G I S ++ D T KGF FVE A +++
Sbjct: 1 MNIYVGNLAYSVTEEDLRAAFSTYGEISSASLITDKFTGNSKGFGFVEMSNNAEADAAIK 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPSNMPQ 133
+N L GRN+KV+ + RP+ P+
Sbjct: 61 GLNETPLKGRNMKVNEAKPRSPRPARAPR 89
>gi|261824019|ref|NP_035383.2| RNA-binding motif protein, Y chromosome, family 1 member A1 [Mus
musculus]
gi|261824021|ref|NP_001159856.1| RNA-binding motif protein, Y chromosome, family 1 member A1 [Mus
musculus]
gi|395394010|ref|NP_001257442.1| predicted gene, 21677 [Mus musculus]
gi|395394015|ref|NP_001257444.1| predicted gene, 21704 [Mus musculus]
gi|395394017|ref|NP_001257445.1| predicted gene, 21708 [Mus musculus]
gi|341941874|sp|O35698.2|RBY1A_MOUSE RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member A1; AltName: Full=RNA-binding motif protein 1;
AltName: Full=Y chromosome RNA recognition motif 1
Length = 380
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+N P ++++G ++ + ++ T+++ F FGP+ + + D T+K +GFAF+ +
Sbjct: 2 AETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
A+ ++++MNGV+L G+ IKV Q RPS++
Sbjct: 62 AKNAVKEMNGVILDGKRIKVK----QARRPSSL 90
>gi|380748929|ref|NP_001244132.1| nucleolysin TIAR isoform 2 [Gallus gallus]
gi|28883273|gb|AAO49720.1| TIA-1 [Gallus gallus]
Length = 372
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q D++ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 204 TVYCGGVTSGLTEQLMR 220
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 249 ESAAHAIVSVNGTTIEGHVVKCYW 272
>gi|426223382|ref|XP_004005854.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Ovis aries]
gi|440907815|gb|ELR57912.1| Nucleolysin TIA-1 isoform p40 [Bos grunniens mutus]
Length = 386
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|383760540|ref|YP_005439526.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
gi|381381210|dbj|BAL98027.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
Length = 161
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++++ +++D+++QAF FG + S + D T + KGF FVE AQ ++
Sbjct: 4 KLYVGNLAYSVRDDSLQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAING 63
Query: 106 MNGVMLGGRNIKVH 119
MNG L GR I V+
Sbjct: 64 MNGQPLEGRAIVVN 77
>gi|365153971|ref|ZP_09350405.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
gi|158605004|gb|EAT99377.3| 31 kDa ribonucleoprotein, (RNA-binding proteinRNP-T) (RNA-binding
protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)
[Campylobacter concisus 13826]
gi|363650683|gb|EHL89770.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
Length = 81
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S+ E +++AF FG ++ + D T + KGF FVE D Q +++
Sbjct: 1 MNIYVGNLSYRTTEAELKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAID 60
Query: 105 QMNGVMLGGRNIKVH 119
+N LGGR ++V+
Sbjct: 61 ALNEKELGGRTLRVN 75
>gi|402588492|gb|EJW82425.1| splicing factor, partial [Wuchereria bancrofti]
Length = 471
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N+ PL++YVG + + ED + + F PFG I+++ ++ D ++ KG+A+V + +
Sbjct: 195 NTTGPLKLYVGQLHTSITEDMLGRIFDPFGKIENLEIATD-LSGVSKGYAYVTFRHADDG 253
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ ++EQMNG L GR +KV
Sbjct: 254 KRAMEQMNGFELAGRPMKV 272
>gi|188219591|ref|NP_071505.2| nucleolysin TIA-1 isoform p40 isoform 2 [Homo sapiens]
gi|114577930|ref|XP_001141557.1| PREDICTED: uncharacterized protein LOC459303 isoform 2 [Pan
troglodytes]
gi|397521824|ref|XP_003830986.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Pan paniscus]
gi|206729905|sp|P31483.3|TIA1_HUMAN RecName: Full=Nucleolysin TIA-1 isoform p40; AltName:
Full=RNA-binding protein TIA-1; AltName:
Full=T-cell-restricted intracellular antigen-1;
Short=TIA-1; AltName: Full=p40-TIA-1
gi|62702267|gb|AAX93193.1| unknown [Homo sapiens]
gi|119620230|gb|EAW99824.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_b [Homo sapiens]
gi|261861076|dbj|BAI47060.1| TIA1 cytotoxic granule-associated RNA binding protein [synthetic
construct]
gi|410226260|gb|JAA10349.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410254978|gb|JAA15456.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410298556|gb|JAA27878.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410353839|gb|JAA43523.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 386
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|402891170|ref|XP_003908827.1| PREDICTED: nucleolysin TIA-1 isoform p40, partial [Papio anubis]
Length = 377
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 93 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 152
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 153 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 212
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 213 TSGLTEQLMR 222
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107
YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L MN
Sbjct: 1 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 58
Query: 108 GVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTEEDIK 166
G + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T EDIK
Sbjct: 59 GRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 114
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 197 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 250
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 251 ESAAHAIVSVNGTTIEGHVVKCYW 274
>gi|357487649|ref|XP_003614112.1| Peptidyl-prolyl cis-trans isomerase E [Medicago truncatula]
gi|217073180|gb|ACJ84949.1| unknown [Medicago truncatula]
gi|355515447|gb|AES97070.1| Peptidyl-prolyl cis-trans isomerase E [Medicago truncatula]
gi|388494832|gb|AFK35482.1| unknown [Medicago truncatula]
Length = 170
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG IK + D TQKH+ F FV + E A +++ M
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 107 NGVMLGGRNIKVHF 120
+G L GR + V++
Sbjct: 72 DGAELYGRVLTVNY 85
>gi|348566571|ref|XP_003469075.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Cavia porcellus]
Length = 388
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++FV ++ E+A ++ +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSV 269
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 270 NGTTIEGHVVKCYW 283
>gi|325972386|ref|YP_004248577.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
gi|324027624|gb|ADY14383.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
Length = 95
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++S++ E+ + F +G + S + D T + KGFAFVE D AA ++ Q
Sbjct: 4 KIYVGNMSYQTTEEALYSLFAQYGDVMSARIIMDRDTNRPKGFAFVEMDDDSAAVAAISQ 63
Query: 106 MNGVMLGGRNIKVH 119
++G L GRN++V+
Sbjct: 64 LDGRELDGRNLRVN 77
>gi|157889123|dbj|BAF81027.1| transformer-2 [Glandirana rugosa]
Length = 272
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 10/107 (9%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N +S + V V +S E +R+ F +GP+ +N+ +D T + +GFAFV ++ E
Sbjct: 113 ANPDSNMCVGVFGLSLYTTERDLREVFSRYGPLGGVNVVYDQRTGRSRGFAFVYFERIED 172
Query: 99 AQLSLEQMNGVMLGGRNIKVHF----------PHVQVGRPSNMPQAQ 135
++ ++E NG+ L GR I+V + P + +GRP++ +
Sbjct: 173 SRAAMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSSSGR 219
>gi|442621495|ref|NP_001263032.1| CG34362, isoform E [Drosophila melanogaster]
gi|440217978|gb|AGB96412.1| CG34362, isoform E [Drosophila melanogaster]
Length = 509
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 166 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 225
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 226 AMNGQWLGSRSIRTNW 241
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 246 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 305
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
K KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 306 ------KDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGK-ESGDPNN 351
>gi|297830792|ref|XP_002883278.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329118|gb|EFH59537.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++ +SF E T+R AF FG + + + D I+++ KG+AF+EY EAA +L++
Sbjct: 285 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAASAALKE 344
Query: 106 MNGVMLGGRNIKV 118
MNG ++ G I V
Sbjct: 345 MNGKIINGWMIVV 357
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY+ ++ ++ ED +R+ F FG I S+ ++ D KG+AFV +D PE A+ + E M
Sbjct: 203 VYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDE-NGLCKGYAFVNFDKPEDARWAAETM 261
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNM-PQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
NG G + + V + R + Q + +E +AK+ N IYV +I+ +TEE++
Sbjct: 262 NGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSN-IYVKNINVGVTEEEL 320
Query: 166 K 166
+
Sbjct: 321 R 321
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PD N V+V ++ + ++ F FG I S ++ K +G+ FV+++
Sbjct: 104 PDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCKVATFE-DGKSRGYGFVQFEQE 162
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASI 156
+AA ++E++N + G+ I V + D E K Y +Y+ ++
Sbjct: 163 DAAHAAIEKLNSTTVAGKEIYV-------------GKFMKKTDRAKAEEK-YTNVYMKNL 208
Query: 157 HPDLTEEDIK 166
D+ E+ ++
Sbjct: 209 DADVNEDLLR 218
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YV +I+ + E+ +R+ F G I S + D K KGF FV + PE A +++
Sbjct: 306 IYVKNINVGVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 107 NGVMLGGR 114
+G M G+
Sbjct: 365 HGKMFHGK 372
>gi|356499919|ref|XP_003518783.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Glycine max]
Length = 172
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG IK + D TQKH+ F FV + E A +++ M
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 107 NGVMLGGRNIKVHF 120
+G L GR + V++
Sbjct: 72 DGAELYGRVLTVNY 85
>gi|443899731|dbj|GAC77060.1| nuclear localization sequence binding protein, partial [Pseudozyma
antarctica T-34]
Length = 400
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G++SF++ ED + AF G + + + DP + + KGF +VE+ E+AQ +++ M
Sbjct: 304 LFIGNLSFDISEDDVWNAFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAAIDAM 363
Query: 107 NGVMLGGRNIKVHF 120
G L GR +++ F
Sbjct: 364 TGQELAGRPLRLDF 377
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +S+ + + ++ FG + S + D T K +GF +V++ AA+ + E+
Sbjct: 204 QIWVGQLSWNVDNEWLKSEMEAFGEVTSARVQLDRTTGKSRGFGYVDFATAAAAKKAFEE 263
Query: 106 MNGVMLGGRNIKVHF 120
G + GR I++
Sbjct: 264 GQGKEVDGRAIRIDL 278
>gi|388514621|gb|AFK45372.1| unknown [Medicago truncatula]
Length = 168
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG IK + D TQKH+ F FV + E A +++ M
Sbjct: 10 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 69
Query: 107 NGVMLGGRNIKVHF 120
+G L GR + V++
Sbjct: 70 DGAELYGRVLTVNY 83
>gi|326491331|dbj|BAK05765.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
I P + R +VG++S+ +++++ AF +G + + D + + +GFAFV +D
Sbjct: 33 ILPVMADEDEYRCFVGNLSWSTTDESLKDAFSKYGKVTEAKVVMDKFSGRSRGFAFVTFD 92
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ-VGRPSN 130
+A + ++E MNG+ L GR I V Q VGR N
Sbjct: 93 EKKAMEEAIEDMNGLDLEGRAITVDKAQPQGVGRDRN 129
>gi|149036617|gb|EDL91235.1| rCG56007, isoform CRA_a [Rattus norvegicus]
Length = 386
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++F+ + E+A ++ +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSV 269
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 270 NGTTIEGHVVKCYW 283
>gi|269859935|ref|XP_002649691.1| cleavage and polyadenylation factor CF-IA component RNA15
[Enterocytozoon bieneusi H348]
gi|269863259|ref|XP_002651156.1| cleavage and polyadenylation factor CF-IA component RNA15
[Enterocytozoon bieneusi H348]
gi|220065037|gb|EED42901.1| cleavage and polyadenylation factor CF-IA component RNA15
[Enterocytozoon bieneusi H348]
gi|220066886|gb|EED44356.1| cleavage and polyadenylation factor CF-IA component RNA15
[Enterocytozoon bieneusi H348]
Length = 241
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V++G+I F++ E+TI + G +KS + +D T K KG+ F EY+ PE A ++L+++
Sbjct: 37 VFIGNIDFDIDEETIVKELSAVGKVKSFRLLYDKATGKSKGYGFCEYETPEVADMALKKL 96
Query: 107 NGVMLGGRNIKVHFPH 122
+ GR K+++
Sbjct: 97 K-ISFNGRQAKINYAE 111
>gi|110638796|ref|YP_679005.1| RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
gi|110281477|gb|ABG59663.1| RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
Length = 143
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ ++VGS+ F L+E+ +R+ F +G + S+ + D T + KGF FVE AAQ +++
Sbjct: 1 MNIFVGSLPFSLEENELREFFEEYGEVSSVKIISDKFTGRSKGFGFVEMPDDAAAQKAID 60
Query: 105 QMNGVMLGGRNIKVH 119
++NG + GR I V+
Sbjct: 61 ELNGAEVNGRTIVVN 75
>gi|68073969|ref|XP_678899.1| splicing factor [Plasmodium berghei strain ANKA]
gi|56499509|emb|CAH94054.1| splicing factor, putative [Plasmodium berghei]
Length = 535
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 34 PITPDVNSNSPLRVYVGSISFELK---EDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
PI P+ + PL++Y+G + L E ++Q F PFG I + + DP T K KGF F
Sbjct: 246 PIDPN---DIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGF 302
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
+++ A ++ MNG+ + GR IKV +
Sbjct: 303 IQFHKASEAIEAMTVMNGMEVAGREIKVSY 332
>gi|403416100|emb|CCM02800.1| predicted protein [Fibroporia radiculosa]
Length = 433
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 19/138 (13%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+VG +S E+ ++ + +AF FG + + WD + K +G+ F+ + A+ ++ M
Sbjct: 109 VFVGDLSPEVNDEVLGKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATM 168
Query: 107 NGVMLGGRNIKVHFPHVQV---------GRPSNMPQAQSVI---------DEITEEAKLY 148
NG LG R I+V++ + + GRPS M A + I + + ++ Y
Sbjct: 169 NGEWLGSRAIRVNWANQKTQGGPSPTMPGRPSGMGGAPAPINFQGGPLSYESVVQQTPAY 228
Query: 149 N-RIYVASIHPDLTEEDI 165
N +YV ++ P T+ D+
Sbjct: 229 NTTVYVGNLVPYCTQADL 246
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
TP N+ VYVG++ + + F G + I M Q +GFAFV+ D
Sbjct: 225 TPAYNTT----VYVGNLVPYCTQADLIPLFQSIGYLSEIRM------QADRGFAFVKLDT 274
Query: 96 PEAAQLSLEQMNGVMLGGRNIK 117
E A +++ Q+ G M+ GR IK
Sbjct: 275 HEHAAMAIVQLQGQMVHGRPIK 296
>gi|442621497|ref|NP_001263033.1| CG34362, isoform F [Drosophila melanogaster]
gi|440217979|gb|AGB96413.1| CG34362, isoform F [Drosophila melanogaster]
Length = 498
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 166 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 225
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 226 AMNGQWLGSRSIRTNW 241
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 246 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 305
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
K KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 306 ------KDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGK-ESGDPNN 351
>gi|24650782|ref|NP_651609.1| CG34362, isoform A [Drosophila melanogaster]
gi|21464374|gb|AAM51990.1| RE10833p [Drosophila melanogaster]
gi|23172487|gb|AAF56774.2| CG34362, isoform A [Drosophila melanogaster]
gi|220947934|gb|ACL86510.1| CG34362-PA [synthetic construct]
gi|220957166|gb|ACL91126.1| CG34362-PA [synthetic construct]
Length = 505
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 166 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 225
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 226 AMNGQWLGSRSIRTNW 241
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 246 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 305
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
K KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 306 ------KDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGK-ESGDPNN 351
>gi|374314656|ref|YP_005061084.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350300|gb|AEV28074.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 92
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++S+ ED +R+ F +G + S + D T++ KGF FVE + AA ++ Q
Sbjct: 4 KIYVGNMSYNTTEDDLRELFSQYGNVLSATIIMDRETRRPKGFGFVEMEENSAADAAISQ 63
Query: 106 MNGVMLGGRNIKVH 119
++G + GRN++V+
Sbjct: 64 LDGKEIDGRNLRVN 77
>gi|195574475|ref|XP_002105214.1| GD21364 [Drosophila simulans]
gi|194201141|gb|EDX14717.1| GD21364 [Drosophila simulans]
Length = 496
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 164 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 223
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 224 AMNGQWLGSRSIRTNW 239
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 244 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 303
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
K KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 304 ------KDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGK-ESGDPNN 349
>gi|194907035|ref|XP_001981474.1| GG11588 [Drosophila erecta]
gi|190656112|gb|EDV53344.1| GG11588 [Drosophila erecta]
Length = 502
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 170 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 229
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 230 AMNGQWLGSRSIRTNW 245
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 250 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 309
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
K KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 310 ------KDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGK-ESGDPNN 355
>gi|345864924|ref|ZP_08817119.1| RNP-1 like RNA-binding protein [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345124004|gb|EGW53889.1| RNP-1 like RNA-binding protein [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 91
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S+ +D + + F P+G + S + D T + +GF FVE AAQ +++
Sbjct: 1 MNIYVGNLSWNTTDDELHELFAPYGAVDSAKVIMDRETGRSRGFGFVEMSDNSAAQSAID 60
Query: 105 QMNGVMLGGRNIKVH 119
+N LGGR+++V+
Sbjct: 61 SLNDSQLGGRSLRVN 75
>gi|422304104|ref|ZP_16391453.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9806]
gi|389790787|emb|CCI13324.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9806]
Length = 97
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++ FE+ +D + + F +G IK +++ D T K +GFAFVE + PE ++
Sbjct: 1 MSIYVGNLPFEVDQDDVVEVFKEYGKIKRVHLPMDRETGKKRGFAFVEMETPEEEAKAIA 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPS 129
++G GR +KV+ + +PS
Sbjct: 61 ALDGAQWMGRELKVNQAREREPKPS 85
>gi|344250807|gb|EGW06911.1| Nucleolysin TIA-1 [Cricetulus griseus]
Length = 387
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSN---MPQAQSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + + Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYELNTKQLSYDEVVSQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++F+ ++ E+A ++ +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQILEIRVFPD------KGYSFIRFNSHESAAHAIVSV 269
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 270 NGTTIEGHVVKCYW 283
>gi|116779573|gb|ABK21345.1| unknown [Picea sitchensis]
gi|224285462|gb|ACN40453.1| unknown [Picea sitchensis]
Length = 198
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++V +S E T++ AF +G + + + + T++ KGF FVE+ E A +L++
Sbjct: 89 KLFVTGLSIYTTERTLQNAFSNYGKVVDVRIIMNKTTRRSKGFGFVEFSTEEEANTALKE 148
Query: 106 MNGVMLGGRNIKVHF--PHVQVGRPSNMPQAQSVID-EITEEA 145
MNG +L G I V P + GR MPQ ++ E+T EA
Sbjct: 149 MNGKILNGWLISVDIAKPTPRSGRAREMPQKTPDMNKEVTAEA 191
>gi|313238973|emb|CBY13961.1| unnamed protein product [Oikopleura dioica]
Length = 315
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+ H+GFAFVEY A +++ M
Sbjct: 9 LYVGGLAEEVDEKMVHAAFIPFGDIIDITVPLDFETEAHRGFAFVEYKETGDAASAMDNM 68
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQ 135
+ L GR +KV+ + RP M
Sbjct: 69 DDAELFGRTLKVN-----IARPIKMKDGH 92
>gi|302790311|ref|XP_002976923.1| hypothetical protein SELMODRAFT_151471 [Selaginella moellendorffii]
gi|302797811|ref|XP_002980666.1| hypothetical protein SELMODRAFT_178258 [Selaginella moellendorffii]
gi|300151672|gb|EFJ18317.1| hypothetical protein SELMODRAFT_178258 [Selaginella moellendorffii]
gi|300155401|gb|EFJ22033.1| hypothetical protein SELMODRAFT_151471 [Selaginella moellendorffii]
Length = 532
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S R+YVG++ + ED +RQ F PFG I+ + + D T KG+ FV+Y E A+
Sbjct: 268 SGGARRLYVGNLHVNITEDQLRQVFEPFGVIELVQLPLDQETGLCKGYGFVQYSKLEDAR 327
Query: 101 LSLEQMNGVM-LGGRNIKV 118
+ + +NG++ L GR IKV
Sbjct: 328 AAQQGLNGILELAGRAIKV 346
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++ + + ED++R+ F FG + S + D I+ + KGFAFV+ E + ++E
Sbjct: 1 MNIYVGNLPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIE 60
Query: 105 QMNGVMLGGRNIKVH 119
++NG L GR I V+
Sbjct: 61 KLNGHELDGRTIVVN 75
>gi|262401121|gb|ACY66463.1| TIA-1-like protein [Scylla paramamosain]
Length = 325
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V+++ VYVG +S E+ E +R+AF FG I + DP + K +G+ FV +
Sbjct: 83 VDTSRHHHVYVGDLSPEIDEQALREAFQVFGEISDCKVVKDPQSFKSRGYGFVVFVKKMD 142
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMP------QAQSVIDEITEEAKLYN-RI 151
A+ S+ MNG LG + IK + +P+N P Q + DE+ + N +
Sbjct: 143 AETSISAMNGQWLGRKMIKTRWA---TRKPANTPNETKPEQKKLNYDEVFNQTTPTNTTV 199
Query: 152 YVASIHPDLTEE 163
+ + D+TEE
Sbjct: 200 FCGGLKQDITEE 211
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107
YVG++ + ED I F G ++S M +P T + FVE+ A ++ MN
Sbjct: 1 YVGNLDNSVTEDLIMMLFGQLGEVRSCKMFREPTTDP---YCFVEFCDHMTALNAITMMN 57
Query: 108 GVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
ML R ++V + Q N + V + ++ +YV + P++ E+ ++
Sbjct: 58 DKMLQNRKMRVDWATGQ----GNKNKYTKV------DTSRHHHVYVGDLSPEIDEQALR 106
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+ G + ++ E+ + ++F P G I+ I + K KG+AF++Y E+A ++ ++
Sbjct: 199 VFCGGLKQDITEEMLHKSFQPHGQIEKIKIF------KEKGYAFIKYTSKESACQAIVEL 252
Query: 107 NGVMLGGRNIKVHF 120
+ L G+ I+ +
Sbjct: 253 HNSNLNGQMIRCSW 266
>gi|198451107|ref|XP_002137227.1| GA26680 [Drosophila pseudoobscura pseudoobscura]
gi|198131338|gb|EDY67785.1| GA26680 [Drosophila pseudoobscura pseudoobscura]
Length = 503
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 172 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 231
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 232 AMNGQWLGSRSIRTNW 247
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 252 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 311
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
K KG+AFV + EAA ++ ++ L + +K + + G P+N
Sbjct: 312 ------KDKGYAFVRFSTKEAATHAIVGVHNTELNAQPVKCSWGK-ESGDPNN 357
>gi|195143945|ref|XP_002012957.1| GL23648 [Drosophila persimilis]
gi|194101900|gb|EDW23943.1| GL23648 [Drosophila persimilis]
Length = 503
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 172 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 231
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 232 AMNGQWLGSRSIRTNW 247
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 252 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 311
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
K KG+AFV + EAA ++ ++ L + +K + + G P+N
Sbjct: 312 ------KDKGYAFVRFSTKEAATHAIVGVHNTELNAQPVKCSWGK-ESGDPNN 357
>gi|320593519|gb|EFX05928.1| RNA splicing factor [Grosmannia clavigera kw1407]
Length = 610
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F + E +R F PFG ++ + + D T + +G+ FV++ + A+ +LE+
Sbjct: 311 RLYVGNIHFSITESDLRNVFEPFGELEFVQLQKDD-TGRSRGYGFVQFRDSDQAREALEK 369
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 370 MNGFDLAGRPIRV 382
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P+T D V+V ++ L+ ++ F GP+ + D ++ + KG +VE+
Sbjct: 200 PLTEDERDRRT--VFVQQLAARLRTRELKDFFEKAGPVAEAQIVKDRVSNRSKGVGYVEF 257
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL---YNR 150
E+ +L Q+ G L G + V + R Q +S + + ++R
Sbjct: 258 RSEESVTAAL-QLTGQKLLGIPVIVQMTEAEKNR-----QVRSTAEATSNGNSTGVPFHR 311
Query: 151 IYVASIHPDLTEEDIK 166
+YV +IH +TE D++
Sbjct: 312 LYVGNIHFSITESDLR 327
>gi|302664299|ref|XP_003023781.1| hypothetical protein TRV_02070 [Trichophyton verrucosum HKI 0517]
gi|291187796|gb|EFE43163.1| hypothetical protein TRV_02070 [Trichophyton verrucosum HKI 0517]
Length = 592
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 37 PDVNSNS-----PL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
PD +SN+ P R+YVG+I F + E ++ F PFG + + + + + KG+ F
Sbjct: 285 PDAHSNNNQQSIPFHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQREE-AGRSKGYGF 343
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
V++ P A+ +LE+MNG L GR I+V
Sbjct: 344 VQFRDPNQAREALEKMNGFDLAGRPIRV 371
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L+ + F GP+K + D ++ + KG +VE+ E+ L++ Q+
Sbjct: 201 VFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAI-QL 259
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G L G I + R + P A S +++ ++R+YV +IH +TE D++
Sbjct: 260 TGQKLLGIPIIAQLTEAEKNRQARNPDAHS---NNNQQSIPFHRLYVGNIHFSITESDLQ 316
>gi|345879103|ref|ZP_08830782.1| hypothetical protein Rifp1Sym_dl00160 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223892|gb|EGV50316.1| hypothetical protein Rifp1Sym_dl00160 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 93
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +YVG++S+ +D + + F P+G + S + D T + +GF FVE AAQ +++
Sbjct: 3 MNIYVGNLSWNTTDDELHELFAPYGAVDSAKVIMDRETGRSRGFGFVEMSDNSAAQSAID 62
Query: 105 QMNGVMLGGRNIKVH 119
+N LGGR+++V+
Sbjct: 63 SLNDSQLGGRSLRVN 77
>gi|333030558|ref|ZP_08458619.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
gi|332741155|gb|EGJ71637.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
Length = 104
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +++GS+SF + ++ + + F P+G + S + D T + KGF FVE + EAA ++
Sbjct: 1 MNIFIGSLSFNVNDEGLAEIFEPYGAVTSARVIKDKFTNRSKGFGFVEMEDDEAATKAIN 60
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPS 129
++NG + GR I V + RP+
Sbjct: 61 ELNGAEVDGRPIAVSEARPREERPA 85
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S R+YVG++ + + + Q F G + + + +D +T + +GF FV E A+
Sbjct: 104 SGEEWRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 163
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLY----NRIYVASI 156
+++ N +GGR +KV+FP V G + + + + I + + Y +++Y ++
Sbjct: 164 EAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTK-----IRDNNRSYVDSPHKVYAGNL 218
Query: 157 HPDLTEEDIK 166
+LT + +K
Sbjct: 219 GWNLTSQGLK 228
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+SP +VY G++ + L ++ AF + + ++ T + +GF F+ ++ E Q
Sbjct: 208 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 267
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL 147
+L MNGV + GR ++++ + +P+ P SV + TEEA L
Sbjct: 268 ALATMNGVEVEGRALRLNLAS-EREKPTVSP--PSVEEGETEEASL 310
>gi|317154439|ref|YP_004122487.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
gi|316944690|gb|ADU63741.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
Length = 87
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++ + ED IR AF +G + S+ + D T + +GF FVE D A + ++E +
Sbjct: 5 IYVGNLPWSATEDEIRAAFGAYGEVTSVKLIEDRETGRPRGFGFVEMDDAGALE-AIENL 63
Query: 107 NGVMLGGRNIKVHFPHVQVGRP 128
+G GGRNIKV+ + RP
Sbjct: 64 DGKDFGGRNIKVNEAKPRAERP 85
>gi|344301362|gb|EGW31674.1| hypothetical protein SPAPADRAFT_62285 [Spathaspora passalidarum
NRRL Y-27907]
Length = 478
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E+ ++ ++QAF F +K ++ WD T + +G+ FV + A+L+L+
Sbjct: 163 FNIFVGDLSPEINDEKLKQAFSKFKSLKQAHVMWDMQTSRSRGYGFVTFSNQSDAELALQ 222
Query: 105 QMNGVMLGGRNIKVHFP-HVQV 125
MNG L GR I+ ++ H Q+
Sbjct: 223 TMNGEWLNGRAIRCNWASHKQL 244
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 23/147 (15%)
Query: 28 DLKQVGPITPDVNSNSPLRV-----YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT 82
D K+ PITP V YVG++S + E+ ++ F G I+S+ + +
Sbjct: 49 DTKETTPITPASAVEGGREVSNKILYVGNLSKSISEEFLKDTFASAGAIQSVKI----LN 104
Query: 83 QKHK---GFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
K+K +AF+EY+ +AA ++L MNG +L IK+++ Q+ ++
Sbjct: 105 DKNKPGFNYAFIEYENNQAADMALNTMNGKILQNFEIKINWAF----------QSATITT 154
Query: 140 EITEEAKLYNRIYVASIHPDLTEEDIK 166
T E +N I+V + P++ +E +K
Sbjct: 155 ANTPEDPSFN-IFVGDLSPEINDEKLK 180
>gi|255563618|ref|XP_002522811.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223538049|gb|EEF39662.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 134
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 34 PITPDVNS---NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
P++ +NS S ++++G +S+ +D+++ AF FG + + + D T + +GF F
Sbjct: 22 PVSSMLNSIRCMSSSKLFIGGLSYGTNDDSLKDAFSGFGDVVTARVITDRDTGRSRGFGF 81
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
V++ ++A +L M+G L GRNI+V + + RP
Sbjct: 82 VDFSSVDSASSALSAMDGQELHGRNIRVSYATERAPRP 119
>gi|321249350|ref|XP_003191429.1| single-stranded DNA binding protein [Cryptococcus gattii WM276]
gi|317457896|gb|ADV19642.1| single-stranded DNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 442
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++GS+SF + ED + +AF G ++S+ + D T KGF +V++ E A +L+ M
Sbjct: 296 LWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVEDASAALKAM 355
Query: 107 NGVMLGGRNIKVHF 120
NG + GR I+V F
Sbjct: 356 NGAEIAGRAIRVDF 369
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D + V+VG +S+ + D ++ F G + S + +D +QK +GF +VE+ E
Sbjct: 187 DGEEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLE 246
Query: 98 AAQLSLEQMNGVMLGGRNIKVHF 120
A+ ++E+ +G + GR I+V++
Sbjct: 247 ASAKAIEK-DGSEIDGRAIRVNY 268
>gi|193212689|ref|YP_001998642.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193086166|gb|ACF11442.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 88
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ +Y+G++ +E+ E +R AF FG + ++ D + + KGF FVE E A ++
Sbjct: 1 MNIYIGNLDYEITETDLRDAFSEFGDVAKASVIMDKFSGRSKGFGFVEMTNDEEANEAIS 60
Query: 105 QMNGVMLGGRNIKVH 119
+N LG RNIKV+
Sbjct: 61 SLNESKLGSRNIKVN 75
>gi|395507384|ref|XP_003758005.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Sarcophilus harrisii]
Length = 394
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
+ + S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 95 VVSTLRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 154
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-R 150
A+ +++QM G LGGR I+ ++ + P + ++ Q D++ ++ N
Sbjct: 155 NKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCT 214
Query: 151 IYVASIHPDLTEEDIK 166
+Y + LTE+ ++
Sbjct: 215 VYCGGVTSGLTEQLMR 230
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 205 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 258
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 259 ESAAHAIVSVNGTTIEGHVVKCYW 282
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L M
Sbjct: 8 MYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 65
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQ---AQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
NG + G+ +KV++ PS+ + + +V+ + + + ++V + P++T E
Sbjct: 66 NGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTLRSQDHFH--VFVGDLSPEITTE 119
Query: 164 DIK 166
DIK
Sbjct: 120 DIK 122
>gi|406946237|gb|EKD77506.1| glycine-rich RNA-binding protein [uncultured bacterium]
Length = 113
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++YVG++S+ ED +R F FG I+ I + D T + KGF F+ Y + + +
Sbjct: 2 SQSKIYVGNLSYNTTEDELRDYFSQFGNIEDIKLIIDFNTGRSKGFGFITYASIQDCESA 61
Query: 103 LEQMNGVMLGGRNIKVHFPH 122
+ NGV +GGR +KV+
Sbjct: 62 VTTANGVDMGGRKLKVNIAR 81
>gi|255582384|ref|XP_002531981.1| Protein gar2, putative [Ricinus communis]
gi|223528378|gb|EEF30417.1| Protein gar2, putative [Ricinus communis]
Length = 436
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ +S +VYVG I + E+ IR F G I ++ P + K +G A + + A
Sbjct: 175 ISEDSATKVYVGGIPYYSTEEDIRSYFEGCGTITEVDCMTFPDSGKFRGIAIIGFKTEAA 234
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A+ +L ++G +GG F +Q + + QA+ V D + + YNRIYV ++
Sbjct: 235 AKRAL-ALDGSDMGG-----FFLKIQPYKTTRTFQAKKVSDFAPKIVEGYNRIYVGNLSW 288
Query: 159 DLTEEDIK 166
D+TEED++
Sbjct: 289 DITEEDLR 296
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 20 PFLSTPLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWD 79
P+ +T + K+V P + R+YVG++S+++ E+ +R+ F I S+ D
Sbjct: 255 PYKTTRTFQAKKVSDFAPKIVEGYN-RIYVGNLSWDITEEDLRK-FFSGCKISSVRWGTD 312
Query: 80 PITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
T + +G+ VE+ + ++L +++ ++ GR IK+
Sbjct: 313 KETGEFRGYGHVEFSDNLSLLMAL-KLDQQIVCGRAIKI 350
>gi|195449393|ref|XP_002072055.1| GK22641 [Drosophila willistoni]
gi|194168140|gb|EDW83041.1| GK22641 [Drosophila willistoni]
Length = 521
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 181 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 240
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 241 AMNGQWLGSRSIRTNW 256
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 14/106 (13%)
Query: 32 VGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMSWDPITQK 84
V P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I + K
Sbjct: 268 VKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEILQKTFTPYGAIQEIRVF------K 321
Query: 85 HKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
KG+AFV + EAA ++ ++ L + +K + + G P+N
Sbjct: 322 DKGYAFVRFSTKEAATHAIVGVHNTELNAQPVKCSWGK-ESGDPNN 366
>gi|351725889|ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycine max]
gi|255625921|gb|ACU13305.1| unknown [Glycine max]
Length = 180
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YV +SF E+++R AF FG + + + D I + +GFAF+ Y E +Q ++E
Sbjct: 89 KLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEG 148
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
M+G L GR I V+V +P
Sbjct: 149 MHGKFLDGRVI-----FVEVAKP 166
>gi|303318024|ref|XP_003069014.1| splicing factor, CC1-like family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240108695|gb|EER26869.1| splicing factor, CC1-like family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320036831|gb|EFW18769.1| RNA splicing factor [Coccidioides posadasii str. Silveira]
Length = 593
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
G ++ + NS R+YVG+I F + E ++ F PFG + + + D + +G+ FV+
Sbjct: 292 GHVSGNQNSIPFHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQKDE-NGRSRGYGFVQ 350
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ P A+ +LE+MNG L GR I+V
Sbjct: 351 FRDPNQAREALEKMNGFDLAGRPIRV 376
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L+ + F GP+K + D ++ + KG +VE+ E+ L++ Q+
Sbjct: 206 VFVQQLAARLRTKELIAFFEKAGPVKDAQIVKDRVSGRSKGVGYVEFKNEESVPLAI-QL 264
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G L G I F + + + + + + ++R+YV +IH +TE D++
Sbjct: 265 TGQKLLGIPIIAQFTEAEKNKAARNTEGHV---SGNQNSIPFHRLYVGNIHFSITESDLQ 321
>gi|212723388|ref|NP_001131976.1| Splicing factor, arginine/serine-rich 2 [Zea mays]
gi|194693082|gb|ACF80625.1| unknown [Zea mays]
gi|195620736|gb|ACG32198.1| splicing factor, arginine/serine-rich 2 [Zea mays]
gi|413955616|gb|AFW88265.1| Splicing factor, arginine/serine-rich 2 [Zea mays]
gi|448878236|gb|AGE46081.1| arginine/serine-rich splicing factor SCL25A transcript I [Zea mays]
Length = 216
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D + + P + V ++ + + D +R+ F FGP+K I + D T++ +GF F++Y PE
Sbjct: 32 DTDRDLPTSLLVRNLRRDCRPDDLRRPFGKFGPVKDIYLPKDYYTREPRGFGFIQYFDPE 91
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYN 149
A + M+G ML GR I V F +PS+M ++I+ + Y+
Sbjct: 92 DASDAKYYMDGKMLLGREIAVVFAEENRKKPSDM----RAREKISGRGRSYD 139
>gi|119186105|ref|XP_001243659.1| hypothetical protein CIMG_03100 [Coccidioides immitis RS]
gi|392870366|gb|EAS32162.2| CC1-like family splicing factor [Coccidioides immitis RS]
Length = 595
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
G ++ + NS R+YVG+I F + E ++ F PFG + + + D + +G+ FV+
Sbjct: 294 GHVSGNQNSIPFHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQKDE-NGRSRGYGFVQ 352
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ P A+ +LE+MNG L GR I+V
Sbjct: 353 FRDPNQAREALEKMNGFDLAGRPIRV 378
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L+ + F GP+K + D ++ + KG +VE+ E+ L++ Q+
Sbjct: 208 VFVQQLAARLRTKELIAFFEKAGPVKDAQIVKDRVSGRSKGVGYVEFKNEESVPLAI-QL 266
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
G L G I F + + + + + + ++R+YV +IH +TE D++
Sbjct: 267 TGQKLLGIPIIAQFTEAEKNKAARNTEGHV---SGNQNSIPFHRLYVGNIHFSITESDLQ 323
>gi|195055815|ref|XP_001994808.1| GH17439 [Drosophila grimshawi]
gi|193892571|gb|EDV91437.1| GH17439 [Drosophila grimshawi]
Length = 520
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 30 KQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
+QV I+P ++VG +S E++ +R+AF PFG I + DP T K KG+
Sbjct: 166 QQVLSISPK---QEQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYG 222
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
FV + A+ ++ MNG LG R+I+ ++
Sbjct: 223 FVSFIKKSEAESAITAMNGQWLGSRSIRTNW 253
>gi|194746386|ref|XP_001955661.1| GF18875 [Drosophila ananassae]
gi|190628698|gb|EDV44222.1| GF18875 [Drosophila ananassae]
Length = 495
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++
Sbjct: 164 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 223
Query: 105 QMNGVMLGGRNIKVHF 120
MNG LG R+I+ ++
Sbjct: 224 AMNGQWLGSRSIRTNW 239
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 25 PLYDLKQVGPITPD--VNSNSPLR--VYVGSIS---FELKEDTIRQAFLPFGPIKSINMS 77
P + + P+T D N +SP VYVG ++ L E+ +++ F P+G I+ I +
Sbjct: 244 PPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVF 303
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
K KG+AFV + EAA ++ ++ + + +K + + G P+N
Sbjct: 304 ------KDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGK-ESGDPNN 349
>gi|330864692|ref|NP_001193477.1| RNA-binding motif protein, X-linked 2-like [Bos taurus]
Length = 330
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G + +EL E I F +G I +IN+ WD T K KGF F+ Y+ + L+++
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
NG+ + GR I+V HV R +P+ +DE+T E
Sbjct: 98 NGIKIKGRTIRV--DHVSNYR---LPEDSEEMDEVTRE 130
>gi|340914842|gb|EGS18183.1| hypothetical protein CTHT_0061980 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 392
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N VYVG+I + + + GP++ ++M D ++Q H+G+ FVE+D P +A+
Sbjct: 9 NKDATVYVGNIDERFTHELLSELMTQVGPVRQVHMPQDRVSQTHQGYGFVEFDTPASAEY 68
Query: 102 SLEQMNGVMLGGRNIKVH 119
+ + +NG+ + G+ I+V+
Sbjct: 69 AAKVLNGIRIWGKPIRVN 86
>gi|374812572|ref|ZP_09716309.1| RNA-binding protein [Treponema primitia ZAS-1]
Length = 90
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++S+ ED +R F FG ++S+ + D T KGF FVE AQ ++
Sbjct: 4 KLYVGNLSYNTHEDNLRSLFSAFGTVESVKIITDRDTGNSKGFGFVEMSTDAEAQAAISG 63
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
N L GR IKV+ + R SN
Sbjct: 64 TNSTDLDGRAIKVNEAMDKPRRESN 88
>gi|242021295|ref|XP_002431080.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Pediculus
humanus corporis]
gi|212516329|gb|EEB18342.1| Heterogeneous nuclear ribonucleoprotein A1, putative, partial
[Pediculus humanus corporis]
Length = 302
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++VG +S E+ T+R AF PFG I + D T K KG+ FV + A+ ++
Sbjct: 3 HIFVGDLSPEIDTQTLRDAFAPFGEISDSRVVRDAQTLKSKGYGFVSFIKKSEAKSAIAA 62
Query: 106 MNGVMLGGRNIKVHF----PHVQVGRPSNMPQAQSVIDEITEEAKLYN-RIYVASIHPDL 160
MNG LG R+I+ ++ P + + +P + DE+ ++ N +Y I L
Sbjct: 63 MNGRWLGSRSIRTNWATRKPSIIKADGNTLPLS---FDEVYKQTSATNCTVYCGGITNGL 119
Query: 161 TEEDIK 166
TEE ++
Sbjct: 120 TEELVQ 125
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G I+ L E+ +++ F P+G I+ I + K KG+AFV + E+A ++ +
Sbjct: 110 VYCGGITNGLTEELVQKHFSPYGTIQEIKVF------KDKGYAFVRFSTKESAAHAIVAV 163
Query: 107 NGVMLGGRNIK 117
+ + G+ +K
Sbjct: 164 HNTEINGQTVK 174
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,567,437,594
Number of Sequences: 23463169
Number of extensions: 99151122
Number of successful extensions: 267931
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 14685
Number of HSP's successfully gapped in prelim test: 6448
Number of HSP's that attempted gapping in prelim test: 234530
Number of HSP's gapped (non-prelim): 34885
length of query: 166
length of database: 8,064,228,071
effective HSP length: 127
effective length of query: 39
effective length of database: 9,379,372,904
effective search space: 365795543256
effective search space used: 365795543256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)