BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2136
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 212 bits (540), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIK VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 191 MNGALMGGRNIK-------VGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 288 MNLFDLGGQLLRV 300
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 15 TKCTYPFLSTPLYDLKQVGPI 35
T P+LS PLYDLKQ G +
Sbjct: 36 TDSKIPYLSQPLYDLKQTGDV 56
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 189 bits (480), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRP ++ QAQ +I+++ EEA+ YNRIYVASIHPDL+++DI
Sbjct: 147 MNSVMLGGRNIK-------VGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L +D I+ F FG IKS ++ +P T KHKGF F+EY+ P+++ ++
Sbjct: 184 RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSS 243
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 244 MNLFDLGGQYLRV 256
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 161 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 213
Query: 166 K 166
K
Sbjct: 214 K 214
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 258 MNLFDLGGQYLRV 270
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 189 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 241
Query: 166 K 166
K
Sbjct: 242 K 242
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 226 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 285
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 286 MNLFDLGGQYLRV 298
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 190 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 242
Query: 166 K 166
K
Sbjct: 243 K 243
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 227 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 286
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 287 MNLFDLGGQYLRV 299
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 195 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 247
Query: 166 K 166
K
Sbjct: 248 K 248
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 292 MNLFDLGGQYLRV 304
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 103/121 (85%), Gaps = 7/121 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIK VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 195 MNSVMLGGRNIK-------VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 247
Query: 166 K 166
K
Sbjct: 248 K 248
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 292 MNLFDLGGQYLRV 304
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY----DIPEAAQLS 102
V+ ++ ++ + + F G ++ + M D +++ KG A+VE+ +P A L+
Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLT 214
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTE 162
+++ GV P + + +A ++ + + + + R+YV S+H ++TE
Sbjct: 215 GQRVLGV-----------PIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 163 EDIK 166
+ ++
Sbjct: 264 DMLR 267
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY----DIPEAAQLS 102
V+ ++ ++ + + F G ++ + M D +++ KG A+VE+ +P A L+
Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLT 214
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTE 162
+++ GV P + + +A ++ + + + + R+YV S+H ++TE
Sbjct: 215 GQRVLGV-----------PIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 163 EDIK 166
+ ++
Sbjct: 264 DMLR 267
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A
Sbjct: 245 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR +KV
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY----DIPEAAQLS 102
V+ ++ ++ + + F G ++ + M D +++ KG A+VE+ +P A L+
Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLT 214
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTE 162
+++ GV P + + +A ++ + + + + R+YV S+H ++TE
Sbjct: 215 GQRVLGV-----------PIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 163 EDIK 166
+ ++
Sbjct: 264 DMLR 267
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A
Sbjct: 258 GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 317
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +LEQ+NG L GR ++V
Sbjct: 318 RRALEQLNGFELAGRPMRV 336
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN +YVG ++ E+ E + AF+PFG I I M D +Q+H+GFAF+EY+ E A
Sbjct: 2 SNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ MN L GR I+V+
Sbjct: 62 AAIDNMNDSELCGRTIRVNL 81
>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2
SV=1
Length = 301
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2
SV=1
Length = 301
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1
SV=1
Length = 301
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>sp|Q9QZH3|PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2
SV=2
Length = 301
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHF 120
N L GR I+V+
Sbjct: 68 NESELFGRTIRVNL 81
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ P ++++G ++ + ++ T+++ F FGP+ + + D T+K +GFAF+ + P
Sbjct: 2 AETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
A+ ++++MNGV+L G+ IKV Q RPS++
Sbjct: 62 AKNAVKEMNGVILDGKRIKVK----QARRPSSL 90
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ F + + + F G + ++ + +D +T + +GFAFV E A+ ++
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQA------QSVIDEITEEAKLYNRIYVASIHPD 159
+G +GGR +KV+FP V G + A Q +D +++YVA++
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSP-------HKLYVANLSWA 227
Query: 160 LTEEDIK 166
LT + ++
Sbjct: 228 LTSQGLR 234
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+SP ++YV ++S+ L +R AF S + +D + + +GF F+ + EA
Sbjct: 214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNS 273
Query: 102 SLEQMNGVMLGGRNIKVH 119
+L+ MN V L GR ++++
Sbjct: 274 ALDTMNEVELEGRPLRLN 291
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY G ++ L E +RQ F PFG I I + D KG++FV + E+A ++ +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 269
Query: 107 NGVMLGGRNIKVHF 120
NG + G +K ++
Sbjct: 270 NGTTIEGHVVKCYW 283
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus
musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+N P ++++G ++ + ++ T+++ F FGP+ + + D T+K +GFAF+ +
Sbjct: 2 AETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
A+ ++++MNGV+L G+ IKV Q RPS++
Sbjct: 62 AKNAVKEMNGVILDGKRIKVK----QARRPSSL 90
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEEDIK 166
LTE+ ++
Sbjct: 222 TSGLTEQLMR 231
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI-TEEAKLYNRIYVASIHPDLTE 162
MNG + G+ +KV++ PS+ + S + T+ ++ + ++V + P++T
Sbjct: 64 AAMNGRKIMGKEVKVNWATT----PSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 163 EDIK 166
EDIK
Sbjct: 120 EDIK 123
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+ +++VG ++F E + F FGPI + + D TQ+ +GF F+ + PE A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 101 LSLEQMNGVMLGGRNIKV 118
+++ MNG L GR I+V
Sbjct: 62 VAMRAMNGESLDGRQIRV 79
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I +E+ E+ + F GP+KS + DP + + KG+ F EY P A ++ +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 107 NGVMLGGRNIKVHFP 121
N G R ++V FP
Sbjct: 67 NNYDAGTRRLRVDFP 81
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG ++FE E+++ Q F +G + + + D +++ +GF FV ++ PE A+ ++
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ SN
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSN 87
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+ +++VG ++F E + F FGPI + + D TQ+ +GF F+ + PE A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 101 LSLEQMNGVMLGGRNIKV 118
++ MNG L GR I+V
Sbjct: 62 DAMRAMNGESLDGRQIRV 79
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 49/80 (61%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++++G +++ + ED++R+AF +G + + D T + +GF FV + EAA +
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 103 LEQMNGVMLGGRNIKVHFPH 122
++ ++G L GR +KV++ +
Sbjct: 98 IQALDGRDLHGRVVKVNYAN 117
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 51 SISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVM 110
+S E +R+ F +GP+ +N+ +D T + +GFAFV ++ + ++ ++E+ NG+
Sbjct: 123 GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGME 182
Query: 111 LGGRNIKVHF----------PHVQVGRPSN 130
L GR I+V + P + +GRP++
Sbjct: 183 LDGRRIRVDYSITKRAHTPTPGIYMGRPTH 212
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 51 SISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVM 110
+S E +R+ F +GP+ +N+ +D T + +GFAFV ++ + ++ ++E+ NG+
Sbjct: 125 GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGME 184
Query: 111 LGGRNIKVHF----------PHVQVGRPSN 130
L GR I+V + P + +GRP++
Sbjct: 185 LDGRRIRVDYSITKRAHTPTPGIYMGRPTH 214
>sp|Q6PG31|RNPS1_DANRE RNA-binding protein with serine-rich domain 1 OS=Danio rerio
GN=rnps1 PE=2 SV=1
Length = 283
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK-HKGFAFVEYDIPEAA 99
S P ++Y+G ++ + +D I++ F +G IK I+M D + KG+A+VEY+ PE A
Sbjct: 133 SPKPTKLYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYESPEDA 192
Query: 100 QLSLEQMNGVMLGGRNI 116
Q +L+ M+G + G+ I
Sbjct: 193 QKALKHMDGGQIDGQEI 209
>sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1
Length = 296
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 30 KQVGPITPDVNSNSPLRV-YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
+Q G + V +N P RV Y+GSI ++ E+ I GP+ ++ M +DP T + KG+
Sbjct: 3 RQSG-VNAGVQNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGY 61
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
AF+E+ E++ ++ +NG LG R +K +
Sbjct: 62 AFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 93
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 33 GPITPDVNSNSPL--RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
GP+T + S + +++VG +S+ + +++QAF FG + + D T + +GF F
Sbjct: 21 GPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGF 80
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
V + ++A ++++M+G L GR I+V+ + P
Sbjct: 81 VSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAP 118
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+ V +I F L ++ ++ F PFG I+ +++ D + KGF +++Y P +A+ +LE+
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDD-QNRSKGFGYIQYRNPISARNALEK 399
Query: 106 MNGVMLGGRNIKV 118
MNG L GRN++V
Sbjct: 400 MNGFDLAGRNMRV 412
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L + F GP++ + D I+ + KG A+VE+ ++ Q ++ +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-AL 300
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G + V + R + + ++R+ V++IH +LT+ED+K
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAREAAELA---RAASAEIPFHRLCVSNIHFNLTDEDVK 357
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1
Length = 363
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+VG+I +++ E + + F GP+K+ + DP T KG+ F E+ E +++ ++
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 107 NGVMLGGRNIKVHFP 121
N LG R I+V FP
Sbjct: 69 NNSELGPRKIRVEFP 83
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 17/128 (13%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+ ++ ++ ED +R+ F FG I S+ ++ D + +G+AFV +D PE A+ + E +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETV 261
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE--------AKLYNRIYVASIHP 158
NG G + + VGR + + ++ E +E AK+ N IYV +++
Sbjct: 262 NGTKFGSKCL-------YVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSN-IYVKNVNV 313
Query: 159 DLTEEDIK 166
+TEE+++
Sbjct: 314 AVTEEELR 321
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YV +++ + E+ +R+ F G I S + D K KGF FV + PE A +++
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 107 NGVMLGGRNIKVHFPHVQVGRP-------SNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
+G M G+ + V + R N +A+ + Y +Y + HP
Sbjct: 365 HGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPG 424
Query: 160 L 160
+
Sbjct: 425 M 425
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
PD N V+V ++ + ++ F FG I S ++ K +G+ FV+++
Sbjct: 103 APDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQ 161
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVAS 155
+AA +++ +N ++ + I V + D + E K Y +Y+ +
Sbjct: 162 EDAAHAAIQTLNSTIVADKEIYV-------------GKFMKKTDRVKPEEK-YTNLYMKN 207
Query: 156 IHPDLTEEDIK 166
+ D++E+ ++
Sbjct: 208 LDADVSEDLLR 218
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 20 PFLSTPLYDLKQVGPITPDVNS--NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMS 77
P P +L VG +TP P R++VG + + E +R+ FGP++ ++
Sbjct: 366 PSQPNPNLNLAAVG-LTPGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIV 424
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
D T KG+AF Y ++ +NG+ LG R + V + Q P P+ +++
Sbjct: 425 KDKETGNSKGYAFCLYKDGTVTDIACAALNGIQLGDRTLTVRRAN-QGAEPR--PEQENI 481
Query: 138 IDEITEEAKLYNRIY 152
+ + +EA++ +Y
Sbjct: 482 LLQAQQEAQMKRLVY 496
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V ++ P ++++G ++ E E ++ F +G I + + D T K +GFAF+ ++ P
Sbjct: 2 VEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ ++ MNG L G+ IKV
Sbjct: 62 AKAAVRDMNGKSLDGKAIKV 81
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG I F+L E + F +G I +N+ D T K KGFAF+ Y+ + L+++ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 107 NGVMLGGRNIKV 118
NG ++ GR IKV
Sbjct: 98 NGALVLGRTIKV 109
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R++V ++S+ KE+ + + F FG I I++ D ++K KG AF+ Y IPE A +L
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421
Query: 106 MNGVMLGGRNIKV 118
M+G + GR I V
Sbjct: 422 MDGKVFQGRLIHV 434
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++ + ++ FE IR+ F +G I+S+ + P H+GF FVE+ E A+ ++E
Sbjct: 796 KIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKP-NGGHRGFGFVEFLTEEEAKNAMEA 854
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKL-YNRI 151
+ GR++ + + + IDE+ E+A L Y +I
Sbjct: 855 LGNSHFYGRHLVLQY-----------AEQDKNIDELREKANLDYEKI 890
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+ +++VG ++F E + F FGPI + + D TQ+ +GF F+ + PE A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 101 LSLEQMNGVMLGGRNIKV 118
+ MNG L GR I+V
Sbjct: 62 DVMRAMNGESLDGRQIRV 79
>sp|A0JM51|CELF5_XENTR CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2
SV=1
Length = 486
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 55 ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGR 114
E ++ + Q FLPFG I S + D T + K F FV +D P +AQ +++ MNG +G +
Sbjct: 411 EFGDNELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMK 470
Query: 115 NIKVHFPHVQVGRPSNMPQ 133
+K VQ+ RP + Q
Sbjct: 471 RLK-----VQLKRPKDTTQ 484
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 33 GPITPDVNSNS-----PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
GP P S+S ++++VG I L+E ++ F FG I + + D T HKG
Sbjct: 30 GPEPPAQQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKG 89
Query: 88 FAFVEY---DIPEAAQLSLEQMNGVMLGGRNIKV 118
AF+ Y D AQ +L + + R I+V
Sbjct: 90 CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQV 123
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +S + E+ + F FG I+ ++ P KG AFV++ AQ +++
Sbjct: 136 KLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGP-DGSSKGCAFVKFSSHAEAQAAIQA 194
Query: 106 MNG 108
++G
Sbjct: 195 LHG 197
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G ++FE ED + QAF +G I + + D T++ +GF FV ++ + A+ ++
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 106 MNGVMLGGRNIKV 118
MNG + GR I+V
Sbjct: 66 MNGKSVDGRQIRV 78
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
A+ +++ M+G +L GR ++V + GRP +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRPPD 97
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++VG + +EL E I F +G I +IN+ D T K KGF F+ Y+ + L+++
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
NG+ + GR I+V HV R PQ +D++T E
Sbjct: 98 NGIKIKGRTIRV--DHVSNYR---APQESEDVDDVTRE 130
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
A+ +++ M+G +L GR ++V + GRP +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRPPD 97
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
A+ +++ M+G +L GR ++V + GRP +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRPPD 97
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
A+ +++ M+G +L GR ++V + GRP +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRPPD 97
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
A+ +++ M+G +L GR ++V + GRP +
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRPPD 97
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 52 ISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML 111
+S E +R+ F +GPI +++ +D +++ +GFAFV ++ + A+ + E+ NG+ L
Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184
Query: 112 GGRNIKVHF----------PHVQVGRPS 129
GR I+V F P + +GRP+
Sbjct: 185 DGRRIRVDFSITKRPHTPTPGIYMGRPT 212
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 52 ISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML 111
+S E +R+ F +GPI +++ +D +++ +GFAFV ++ + A+ + E+ NG+ L
Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184
Query: 112 GGRNIKVHF----------PHVQVGRPS 129
GR I+V F P + +GRP+
Sbjct: 185 DGRRIRVDFSITKRPHTPTPGIYMGRPT 212
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 52 ISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML 111
+S E +R+ F +GPI +++ +D +++ +GFAFV ++ + A+ + E+ NG+ L
Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184
Query: 112 GGRNIKVHF----------PHVQVGRPS 129
GR I+V F P + +GRP+
Sbjct: 185 DGRRIRVDFSITKRPHTPTPGIYMGRPT 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,331,732
Number of Sequences: 539616
Number of extensions: 2380418
Number of successful extensions: 7652
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 206
Number of HSP's that attempted gapping in prelim test: 6231
Number of HSP's gapped (non-prelim): 1428
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)