Query psy2136
Match_columns 166
No_of_seqs 118 out of 1627
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 16:57:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 4E-22 8.6E-27 155.5 13.5 109 40-166 103-211 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.3E-21 4.9E-26 152.1 12.1 105 44-166 3-107 (352)
3 TIGR01645 half-pint poly-U bin 99.8 5.4E-21 1.2E-25 157.0 10.7 118 42-166 105-222 (612)
4 KOG0117|consensus 99.8 1.6E-20 3.5E-25 145.7 11.0 105 38-166 77-182 (506)
5 KOG0124|consensus 99.8 3.5E-20 7.6E-25 141.1 6.9 115 45-166 114-228 (544)
6 PLN03134 glycine-rich RNA-bind 99.8 1.6E-18 3.5E-23 119.9 13.9 86 41-126 31-116 (144)
7 TIGR01628 PABP-1234 polyadenyl 99.8 3.6E-19 7.8E-24 147.6 11.8 105 46-166 2-106 (562)
8 TIGR01622 SF-CC1 splicing fact 99.8 1.5E-18 3.2E-23 140.6 12.1 119 41-166 86-204 (457)
9 KOG0148|consensus 99.8 8E-19 1.7E-23 128.8 9.0 120 45-166 63-182 (321)
10 TIGR01648 hnRNP-R-Q heterogene 99.8 1.1E-18 2.3E-23 143.2 10.5 101 41-166 55-156 (578)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 9.2E-18 2E-22 136.9 12.5 120 42-166 273-412 (481)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 7.6E-17 1.6E-21 126.5 14.0 83 42-124 267-349 (352)
13 KOG0145|consensus 99.7 5.6E-17 1.2E-21 118.8 10.8 104 44-165 41-144 (360)
14 KOG0131|consensus 99.7 1.1E-17 2.3E-22 116.4 6.5 108 41-165 6-113 (203)
15 TIGR01628 PABP-1234 polyadenyl 99.7 4.1E-17 9E-22 135.4 10.3 124 42-166 176-303 (562)
16 KOG0122|consensus 99.7 1.3E-16 2.8E-21 115.7 11.2 84 41-124 186-269 (270)
17 KOG0105|consensus 99.7 6.3E-17 1.4E-21 113.1 8.4 121 43-166 5-133 (241)
18 PF00076 RRM_1: RNA recognitio 99.7 2E-16 4.4E-21 95.8 9.2 70 47-117 1-70 (70)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 5.2E-16 1.1E-20 126.6 11.0 111 44-166 2-114 (481)
20 KOG0144|consensus 99.7 3.8E-16 8.3E-21 121.1 8.2 111 39-166 29-142 (510)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.1E-15 4.5E-20 123.8 11.8 120 40-166 171-313 (509)
22 PF14259 RRM_6: RNA recognitio 99.6 4.5E-15 9.9E-20 90.2 10.1 70 47-117 1-70 (70)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.6 6.6E-15 1.4E-19 120.8 14.1 84 42-125 293-376 (509)
24 KOG0149|consensus 99.6 8.2E-16 1.8E-20 111.0 6.8 79 44-123 12-90 (247)
25 KOG0125|consensus 99.6 2.4E-15 5.3E-20 113.2 9.5 87 38-126 90-176 (376)
26 KOG0109|consensus 99.6 1.1E-15 2.5E-20 113.4 6.2 94 45-166 3-96 (346)
27 TIGR01645 half-pint poly-U bin 99.6 7.9E-15 1.7E-19 121.0 11.2 83 43-125 203-285 (612)
28 KOG0127|consensus 99.6 6.7E-15 1.5E-19 117.2 9.8 80 44-124 117-196 (678)
29 KOG0107|consensus 99.6 5.1E-15 1.1E-19 102.6 7.9 79 43-126 9-87 (195)
30 TIGR01659 sex-lethal sex-letha 99.6 1.6E-14 3.5E-19 113.0 11.6 82 43-124 192-275 (346)
31 PLN03120 nucleic acid binding 99.6 1.7E-14 3.6E-19 107.1 10.9 77 44-124 4-80 (260)
32 TIGR01648 hnRNP-R-Q heterogene 99.6 1.4E-14 3E-19 119.2 11.5 114 44-165 233-358 (578)
33 KOG0113|consensus 99.6 1.6E-14 3.5E-19 107.6 10.7 86 37-122 94-179 (335)
34 KOG0127|consensus 99.6 1.2E-14 2.5E-19 115.9 8.7 123 44-166 5-135 (678)
35 KOG0117|consensus 99.6 1.1E-14 2.3E-19 113.6 7.9 111 43-166 163-277 (506)
36 KOG0126|consensus 99.6 1.5E-15 3.3E-20 105.8 2.3 83 40-122 31-113 (219)
37 PLN03213 repressor of silencin 99.6 3.3E-14 7.2E-19 112.4 9.9 80 41-124 7-88 (759)
38 COG0724 RNA-binding proteins ( 99.5 5.3E-14 1.1E-18 105.4 10.5 122 44-165 115-242 (306)
39 KOG4207|consensus 99.5 1.3E-14 2.8E-19 103.2 6.4 82 42-123 11-92 (256)
40 TIGR01622 SF-CC1 splicing fact 99.5 6.3E-14 1.4E-18 113.7 11.0 79 44-122 186-264 (457)
41 smart00362 RRM_2 RNA recogniti 99.5 9.8E-14 2.1E-18 83.5 9.2 71 46-118 1-71 (72)
42 KOG0111|consensus 99.5 1E-14 2.2E-19 104.7 5.5 86 42-127 8-93 (298)
43 KOG0121|consensus 99.5 2.6E-14 5.7E-19 94.3 6.8 82 41-122 33-114 (153)
44 KOG0148|consensus 99.5 1.4E-13 3E-18 101.5 9.9 81 39-125 159-239 (321)
45 PLN03121 nucleic acid binding 99.5 3.8E-13 8.3E-18 98.6 11.2 76 43-122 4-79 (243)
46 smart00360 RRM RNA recognition 99.5 2.3E-13 5.1E-18 81.6 8.3 70 49-118 1-70 (71)
47 KOG0108|consensus 99.5 7.3E-14 1.6E-18 111.2 7.6 82 45-126 19-100 (435)
48 KOG0130|consensus 99.5 1E-13 2.2E-18 92.4 6.5 83 43-125 71-153 (170)
49 KOG4205|consensus 99.5 8.5E-14 1.8E-18 106.6 7.0 111 43-166 5-115 (311)
50 cd00590 RRM RRM (RNA recogniti 99.5 1.3E-12 2.9E-17 78.9 10.0 74 46-120 1-74 (74)
51 KOG1457|consensus 99.4 2.5E-12 5.5E-17 92.6 10.2 85 40-124 30-118 (284)
52 KOG0114|consensus 99.4 3.2E-12 6.9E-17 81.6 9.1 82 38-122 12-93 (124)
53 KOG4206|consensus 99.4 1.4E-12 3E-17 94.0 8.1 79 44-125 9-91 (221)
54 KOG0144|consensus 99.4 5.8E-13 1.2E-17 103.7 6.5 86 43-129 123-211 (510)
55 KOG0123|consensus 99.4 3.1E-12 6.7E-17 100.8 9.1 92 45-165 2-93 (369)
56 KOG0145|consensus 99.4 9.3E-12 2E-16 91.6 10.1 81 43-123 277-357 (360)
57 PF13893 RRM_5: RNA recognitio 99.3 1.3E-11 2.9E-16 71.7 8.1 56 61-121 1-56 (56)
58 smart00361 RRM_1 RNA recogniti 99.3 1.8E-11 3.9E-16 74.5 8.1 61 58-118 2-69 (70)
59 KOG0123|consensus 99.3 1E-11 2.2E-16 97.9 7.8 109 44-165 76-184 (369)
60 KOG0146|consensus 99.3 6.9E-12 1.5E-16 92.6 5.7 88 38-125 279-366 (371)
61 KOG0110|consensus 99.2 2E-11 4.3E-16 100.2 7.7 113 45-166 516-631 (725)
62 KOG0147|consensus 99.2 1.3E-11 2.9E-16 98.6 6.4 79 45-123 279-357 (549)
63 KOG0131|consensus 99.2 1.9E-11 4E-16 85.5 6.3 89 40-128 92-181 (203)
64 KOG1190|consensus 99.2 7.9E-11 1.7E-15 91.4 9.5 118 44-166 297-432 (492)
65 KOG4208|consensus 99.2 1.2E-10 2.6E-15 83.0 8.4 84 41-124 46-130 (214)
66 KOG0415|consensus 99.2 6.9E-11 1.5E-15 90.4 7.2 80 43-122 238-317 (479)
67 KOG0153|consensus 99.2 2E-10 4.4E-15 87.5 9.5 80 38-123 222-302 (377)
68 KOG0147|consensus 99.2 5.1E-12 1.1E-16 101.0 0.0 122 40-166 175-296 (549)
69 KOG0146|consensus 99.1 3.5E-10 7.5E-15 83.7 6.4 93 33-126 8-103 (371)
70 KOG4212|consensus 99.0 1.6E-09 3.4E-14 85.1 9.1 78 44-122 44-122 (608)
71 KOG0109|consensus 99.0 7.5E-10 1.6E-14 82.7 6.4 78 41-126 75-152 (346)
72 KOG0132|consensus 99.0 1.1E-09 2.4E-14 90.9 7.3 76 44-125 421-496 (894)
73 KOG0106|consensus 99.0 4.7E-10 1E-14 81.5 4.6 114 45-166 2-117 (216)
74 KOG0116|consensus 99.0 6.1E-09 1.3E-13 82.9 9.7 81 44-125 288-368 (419)
75 KOG4211|consensus 98.9 8.9E-09 1.9E-13 81.8 10.0 111 43-165 9-120 (510)
76 KOG0110|consensus 98.9 9.5E-10 2.1E-14 90.5 4.7 82 44-125 613-694 (725)
77 KOG4205|consensus 98.9 5.3E-09 1.1E-13 80.4 8.1 85 43-128 96-180 (311)
78 KOG0124|consensus 98.9 4.4E-09 9.5E-14 81.0 6.5 78 44-121 210-287 (544)
79 PF04059 RRM_2: RNA recognitio 98.9 2.7E-08 5.9E-13 63.8 8.8 80 45-124 2-87 (97)
80 KOG0151|consensus 98.8 2.4E-08 5.2E-13 82.5 9.3 85 41-125 171-258 (877)
81 KOG0129|consensus 98.8 2.5E-08 5.5E-13 79.7 9.0 120 43-165 258-387 (520)
82 KOG0533|consensus 98.8 3.2E-08 7E-13 73.4 8.4 82 42-124 81-162 (243)
83 KOG1456|consensus 98.8 2.8E-07 6.1E-12 71.4 12.7 121 40-165 283-423 (494)
84 KOG4661|consensus 98.8 6.5E-08 1.4E-12 78.5 9.6 85 41-125 402-486 (940)
85 KOG4209|consensus 98.8 1.9E-08 4.1E-13 74.6 6.0 85 39-124 96-180 (231)
86 KOG1548|consensus 98.7 1.5E-07 3.3E-12 72.0 9.7 86 39-125 129-222 (382)
87 KOG4454|consensus 98.6 1.6E-08 3.5E-13 72.9 1.8 75 44-120 9-83 (267)
88 KOG4212|consensus 98.6 2.1E-07 4.6E-12 73.4 7.8 76 40-120 532-607 (608)
89 KOG0120|consensus 98.6 1.3E-07 2.9E-12 76.5 5.9 89 39-127 284-372 (500)
90 KOG4660|consensus 98.5 1E-07 2.2E-12 76.9 4.6 72 41-117 72-143 (549)
91 KOG0226|consensus 98.5 1.7E-07 3.7E-12 69.1 4.7 81 42-122 188-268 (290)
92 PF11608 Limkain-b1: Limkain b 98.1 1.7E-05 3.6E-10 49.1 6.3 68 45-122 3-75 (90)
93 KOG4206|consensus 98.0 8.3E-05 1.8E-09 54.2 8.8 78 40-122 142-220 (221)
94 KOG1995|consensus 97.9 1.2E-05 2.6E-10 62.1 3.8 82 44-125 66-155 (351)
95 KOG1457|consensus 97.9 1.3E-05 2.8E-10 58.4 3.7 64 45-112 211-274 (284)
96 PF08777 RRM_3: RNA binding mo 97.8 7.9E-05 1.7E-09 48.7 6.4 59 45-109 2-60 (105)
97 KOG4210|consensus 97.8 2.1E-05 4.6E-10 60.3 4.2 85 40-125 180-265 (285)
98 KOG0128|consensus 97.8 3.2E-06 6.9E-11 71.5 -1.0 68 45-112 668-735 (881)
99 KOG4849|consensus 97.7 5.2E-05 1.1E-09 58.6 4.8 72 44-115 80-153 (498)
100 KOG1190|consensus 97.7 0.00027 5.9E-09 55.8 8.1 95 25-123 395-490 (492)
101 KOG4211|consensus 97.6 0.00019 4.2E-09 57.7 7.0 76 44-121 103-179 (510)
102 KOG4307|consensus 97.6 0.00027 5.9E-09 59.2 7.6 75 45-120 868-943 (944)
103 KOG3152|consensus 97.6 3.1E-05 6.6E-10 57.4 1.9 72 44-115 74-157 (278)
104 KOG2314|consensus 97.6 0.00044 9.6E-09 56.6 8.5 78 42-120 56-140 (698)
105 COG5175 MOT2 Transcriptional r 97.6 0.00026 5.6E-09 54.7 6.5 80 45-124 115-203 (480)
106 PF08675 RNA_bind: RNA binding 97.5 0.0011 2.3E-08 41.1 7.6 57 43-108 8-64 (87)
107 KOG0106|consensus 97.5 0.0001 2.2E-09 53.9 3.3 74 40-121 95-168 (216)
108 KOG0112|consensus 97.5 0.00018 3.9E-09 61.6 4.8 84 40-129 451-536 (975)
109 KOG4210|consensus 97.4 0.00015 3.2E-09 55.7 3.4 116 43-166 87-203 (285)
110 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00058 1.3E-08 38.9 4.9 52 45-103 2-53 (53)
111 KOG0129|consensus 97.3 0.00089 1.9E-08 54.3 6.9 66 40-105 366-432 (520)
112 KOG1365|consensus 97.2 0.0013 2.8E-08 51.7 6.1 81 40-121 276-359 (508)
113 KOG2193|consensus 97.0 0.00021 4.5E-09 56.7 0.9 73 46-124 3-76 (584)
114 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0036 7.8E-08 40.5 6.3 76 44-121 6-89 (100)
115 KOG1365|consensus 97.0 0.0025 5.4E-08 50.1 6.1 71 45-117 162-236 (508)
116 KOG1548|consensus 96.9 0.005 1.1E-07 47.8 7.2 79 42-124 263-352 (382)
117 KOG1456|consensus 96.8 0.012 2.6E-07 46.3 8.8 76 45-125 121-200 (494)
118 KOG0120|consensus 96.8 0.0065 1.4E-07 49.8 7.4 62 60-121 425-489 (500)
119 KOG1855|consensus 96.8 0.002 4.3E-08 51.3 4.3 73 38-110 225-310 (484)
120 PF08952 DUF1866: Domain of un 96.8 0.009 2E-07 41.1 6.9 58 60-126 52-109 (146)
121 PF10309 DUF2414: Protein of u 96.4 0.027 5.8E-07 33.1 6.4 54 45-106 6-62 (62)
122 KOG0112|consensus 96.3 0.0013 2.8E-08 56.6 0.8 82 38-120 366-447 (975)
123 KOG1996|consensus 95.8 0.038 8.1E-07 42.3 6.4 63 59-121 301-364 (378)
124 KOG0128|consensus 95.8 0.0067 1.4E-07 52.1 2.6 79 44-123 736-814 (881)
125 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.032 7E-07 39.9 5.7 81 43-123 6-97 (176)
126 KOG0105|consensus 95.5 0.084 1.8E-06 37.8 6.6 63 43-112 114-176 (241)
127 KOG2068|consensus 95.1 0.011 2.5E-07 45.7 1.5 81 45-125 78-164 (327)
128 PF03880 DbpA: DbpA RNA bindin 95.1 0.14 3E-06 31.1 6.0 59 54-121 11-74 (74)
129 KOG4307|consensus 95.0 0.027 6E-07 47.7 3.7 81 40-121 430-511 (944)
130 KOG0115|consensus 95.0 0.037 8E-07 41.4 3.9 62 45-107 32-93 (275)
131 KOG2416|consensus 95.0 0.03 6.5E-07 46.6 3.7 77 40-122 440-520 (718)
132 KOG4676|consensus 94.7 0.069 1.5E-06 42.4 4.9 75 45-120 8-85 (479)
133 KOG2202|consensus 94.5 0.018 3.8E-07 43.0 1.3 62 60-122 84-146 (260)
134 PF15023 DUF4523: Protein of u 94.5 0.37 8.1E-06 33.1 7.4 75 40-122 82-160 (166)
135 PF04847 Calcipressin: Calcipr 94.1 0.19 4.2E-06 36.2 5.8 61 58-124 9-71 (184)
136 KOG2135|consensus 93.9 0.038 8.2E-07 44.8 2.0 67 51-124 379-446 (526)
137 KOG4285|consensus 93.9 0.59 1.3E-05 36.0 8.2 60 47-114 200-259 (350)
138 KOG4660|consensus 93.9 0.15 3.2E-06 42.1 5.3 58 68-125 413-474 (549)
139 PF07576 BRAP2: BRCA1-associat 93.6 1.3 2.9E-05 29.1 9.2 67 45-113 13-81 (110)
140 PLN03134 glycine-rich RNA-bind 93.2 0.039 8.5E-07 38.1 1.0 20 147-166 33-52 (144)
141 KOG0121|consensus 92.7 0.053 1.1E-06 36.5 1.0 23 143-165 31-53 (153)
142 KOG2253|consensus 92.7 0.082 1.8E-06 44.5 2.3 68 44-120 40-107 (668)
143 PF07292 NID: Nmi/IFP 35 domai 92.3 0.32 7E-06 30.6 4.1 68 89-166 1-70 (88)
144 PF11767 SET_assoc: Histone ly 90.5 2.4 5.2E-05 25.2 6.5 55 55-118 11-65 (66)
145 KOG0804|consensus 90.3 2.5 5.4E-05 34.5 8.2 68 44-113 74-142 (493)
146 KOG4574|consensus 88.0 0.33 7.2E-06 42.3 2.0 70 49-124 303-374 (1007)
147 COG0724 RNA-binding proteins ( 85.1 0.38 8.3E-06 35.4 0.8 19 148-166 115-133 (306)
148 KOG4410|consensus 83.8 3.7 7.9E-05 31.6 5.5 46 45-96 331-377 (396)
149 KOG2591|consensus 83.3 2.4 5.3E-05 35.5 4.7 67 45-118 176-246 (684)
150 KOG4483|consensus 83.0 4.1 8.9E-05 32.9 5.7 55 44-105 391-446 (528)
151 KOG0125|consensus 82.2 0.91 2E-05 35.5 1.8 19 148-166 96-114 (376)
152 PF07530 PRE_C2HC: Associated 79.7 4.1 8.9E-05 24.3 3.7 62 59-123 2-64 (68)
153 KOG2318|consensus 79.4 11 0.00024 31.9 7.2 80 41-120 171-304 (650)
154 smart00596 PRE_C2HC PRE_C2HC d 77.4 4.1 8.9E-05 24.4 3.2 61 59-122 2-63 (69)
155 PF15513 DUF4651: Domain of un 62.3 16 0.00035 21.3 3.3 19 59-77 9-27 (62)
156 KOG0113|consensus 62.3 3 6.6E-05 32.2 0.4 21 146-166 99-119 (335)
157 KOG4676|consensus 59.1 1.1 2.4E-05 35.8 -2.4 63 45-112 152-214 (479)
158 PF10567 Nab6_mRNP_bdg: RNA-re 52.4 13 0.00028 28.8 2.3 37 44-80 15-51 (309)
159 KOG4019|consensus 47.1 18 0.00038 26.1 2.2 72 45-122 11-88 (193)
160 KOG0132|consensus 46.0 6.8 0.00015 34.3 0.0 19 148-166 421-439 (894)
161 KOG1295|consensus 45.6 37 0.00081 27.3 4.0 69 45-113 8-79 (376)
162 KOG0226|consensus 45.4 23 0.00051 26.9 2.7 108 45-165 97-207 (290)
163 KOG0116|consensus 45.3 10 0.00022 31.0 0.9 19 148-166 288-306 (419)
164 KOG2295|consensus 45.0 2.8 6.1E-05 35.1 -2.3 72 42-113 229-300 (648)
165 KOG0156|consensus 42.8 51 0.0011 27.6 4.6 59 48-116 36-97 (489)
166 KOG2891|consensus 42.8 23 0.00051 27.3 2.4 66 45-110 150-246 (445)
167 KOG0533|consensus 39.2 12 0.00026 28.2 0.4 18 149-166 84-101 (243)
168 KOG0151|consensus 38.6 15 0.00032 32.1 0.9 20 146-165 172-191 (877)
169 KOG0153|consensus 38.0 12 0.00027 29.6 0.3 19 148-166 228-246 (377)
170 KOG4454|consensus 36.0 10 0.00022 28.3 -0.4 67 45-112 81-151 (267)
171 PF03468 XS: XS domain; Inter 35.8 71 0.0015 21.1 3.7 45 57-104 30-75 (116)
172 KOG0122|consensus 32.2 20 0.00044 27.0 0.7 20 147-166 188-207 (270)
173 PF09707 Cas_Cas2CT1978: CRISP 31.0 87 0.0019 19.6 3.3 48 45-95 26-73 (86)
174 COG5193 LHP1 La protein, small 28.1 31 0.00068 28.0 1.1 60 45-104 175-244 (438)
175 KOG4849|consensus 26.8 22 0.00047 28.4 0.1 18 148-165 80-97 (498)
176 PF15407 Spo7_2_N: Sporulation 26.4 18 0.0004 21.5 -0.3 21 40-60 23-43 (67)
177 COG0030 KsgA Dimethyladenosine 25.5 1.1E+02 0.0023 23.5 3.5 34 45-78 96-129 (259)
178 KOG2193|consensus 22.5 2.6 5.7E-05 34.2 -5.7 74 44-121 80-154 (584)
179 KOG0415|consensus 22.5 51 0.0011 26.5 1.3 21 146-166 237-257 (479)
180 PF03439 Spt5-NGN: Early trans 20.3 1.9E+02 0.0042 17.6 3.5 26 85-110 43-68 (84)
181 KOG4365|consensus 20.1 17 0.00036 29.9 -1.8 75 46-121 5-79 (572)
182 PF02714 DUF221: Domain of unk 20.0 1.6E+02 0.0035 22.7 3.8 34 89-124 1-34 (325)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.89 E-value=4e-22 Score=155.53 Aligned_cols=109 Identities=19% Similarity=0.388 Sum_probs=97.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||+++++++|+++|..||+|.+++|+.++.+++++|||||+|.+.++|+.|+..|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 120 FPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 120 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
++++.... ....+|||+|||+++||++|+
T Consensus 183 ~a~p~~~~------------------~~~~~lfV~nLp~~vtee~L~ 211 (346)
T TIGR01659 183 YARPGGES------------------IKDTNLYVTNLPRTITDDQLD 211 (346)
T ss_pred cccccccc------------------cccceeEEeCCCCcccHHHHH
Confidence 98643211 113689999999999999985
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.86 E-value=2.3e-21 Score=152.15 Aligned_cols=105 Identities=24% Similarity=0.459 Sum_probs=95.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
..+|||+|||..+++++|+++|.+||+|.+++++.++.+|+++|||||+|.+.++|+.|+..|+|..+.|+.|+|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 124 QVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.... ....+|||+|||.++++++|+
T Consensus 83 ~~~~------------------~~~~~l~v~~l~~~~~~~~l~ 107 (352)
T TIGR01661 83 SSDS------------------IKGANLYVSGLPKTMTQHELE 107 (352)
T ss_pred cccc------------------cccceEEECCccccCCHHHHH
Confidence 3211 113689999999999999874
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=5.4e-21 Score=157.00 Aligned_cols=118 Identities=74% Similarity=1.112 Sum_probs=97.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
...++||||||++.+++++|+++|.+||.|.++.+++++.+|+++|||||+|.+.+.|+.|+..|+|..+.|+.|+|.++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 122 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
...... ....+..........+|||+|||+++++++|+
T Consensus 185 ~~~p~a-------~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk 222 (612)
T TIGR01645 185 SNMPQA-------QPIIDMVQEEAKKFNRIYVASVHPDLSETDIK 222 (612)
T ss_pred cccccc-------ccccccccccccccceEEeecCCCCCCHHHHH
Confidence 432111 11111111122345799999999999999985
No 4
>KOG0117|consensus
Probab=99.84 E-value=1.6e-20 Score=145.68 Aligned_cols=105 Identities=24% Similarity=0.423 Sum_probs=96.6
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeeE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG-GRNI 116 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l 116 (166)
...+..++-||||.||.++.+++|..+|++.|+|-.+++|+++.+|.++|||||.|.+.+.|+.|++.||+.+|. |+.|
T Consensus 77 g~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 77 GPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 345566899999999999999999999999999999999999999999999999999999999999999999997 8999
Q ss_pred EEEecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 117 KVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 117 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.|+.+-. .++|||||||++.++|+|+
T Consensus 157 gvc~Sva------------------------n~RLFiG~IPK~k~keeIl 182 (506)
T KOG0117|consen 157 GVCVSVA------------------------NCRLFIGNIPKTKKKEEIL 182 (506)
T ss_pred EEEEeee------------------------cceeEeccCCccccHHHHH
Confidence 9987632 3899999999999999873
No 5
>KOG0124|consensus
Probab=99.81 E-value=3.5e-20 Score=141.08 Aligned_cols=115 Identities=82% Similarity=1.263 Sum_probs=110.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
++||||.+.+...++.|+..|..||+|.+|.+.||+.|++++|||||+|.-.+.|+.|++.+||..++||.|+|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg----- 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG----- 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc-----
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 125 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
+|++.++++...+...+..+..++|||..+.++++|+|||
T Consensus 189 --rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiK 228 (544)
T KOG0124|consen 189 --RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIK 228 (544)
T ss_pred --CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHH
Confidence 7888899999999999999999999999999999999985
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=1.6e-18 Score=119.87 Aligned_cols=86 Identities=26% Similarity=0.504 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
...+++|||+|||+++++++|+++|.+||.|.++.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy2136 121 PHVQVG 126 (166)
Q Consensus 121 a~~~~~ 126 (166)
+.....
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 875543
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.80 E-value=3.6e-19 Score=147.62 Aligned_cols=105 Identities=25% Similarity=0.522 Sum_probs=93.2
Q ss_pred EEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccCC
Q psy2136 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQV 125 (166)
Q Consensus 46 ~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~ 125 (166)
+|||||||.++++++|+++|.+||.|.+|++++++.+++++|||||+|.+.++|++|+..+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999975332
Q ss_pred CCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 126 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
... .....+|||+|||+++++++|+
T Consensus 82 ~~~----------------~~~~~~vfV~nLp~~~~~~~L~ 106 (562)
T TIGR01628 82 SLR----------------RSGVGNIFVKNLDKSVDNKALF 106 (562)
T ss_pred ccc----------------ccCCCceEEcCCCccCCHHHHH
Confidence 110 1123589999999999999874
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.79 E-value=1.5e-18 Score=140.64 Aligned_cols=119 Identities=23% Similarity=0.411 Sum_probs=96.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
+...++|||+|||..+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.+.|++|+. |+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3446899999999999999999999999999999999999999999999999999999999997 899999999999988
Q ss_pred cccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 121 PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
+.............. ........+|||+|||.++|+++|+
T Consensus 165 ~~~~~~~~~~~~~~~------~~~~p~~~~l~v~nl~~~~te~~l~ 204 (457)
T TIGR01622 165 SQAEKNRAAKAATHQ------PGDIPNFLKLYVGNLHFNITEQELR 204 (457)
T ss_pred cchhhhhhhhccccc------CCCCCCCCEEEEcCCCCCCCHHHHH
Confidence 654332221100000 0011225799999999999999984
No 9
>KOG0148|consensus
Probab=99.78 E-value=8e-19 Score=128.80 Aligned_cols=120 Identities=28% Similarity=0.499 Sum_probs=101.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
..||||.|...++.++|++.|..||.|.+.++++|..|++++||+||.|.+..+|+.||..|+|.=|++|.|+-.||.++
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 125 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
....... .....+-..+.+....+||+|||+..+||++||
T Consensus 143 p~e~n~~--~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr 182 (321)
T KOG0148|consen 143 PSEMNGK--PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMR 182 (321)
T ss_pred ccccCCC--CccHHHHhccCCCCCceEEeCCcCccccHHHHH
Confidence 6322221 122222222334457899999999999999886
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.78 E-value=1.1e-18 Score=143.22 Aligned_cols=101 Identities=27% Similarity=0.427 Sum_probs=90.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeeEEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG-GRNIKVH 119 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l~v~ 119 (166)
+..+++|||+|||.++++++|+++|.++|.|.+++++++ .+|+++|||||+|.+.++|+.|++.|++..+. |+.+.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 78999999999999999999999999999886 6777776
Q ss_pred ecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 120 FPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 120 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
++. ...+|||+|||+++++++|+
T Consensus 134 ~S~------------------------~~~rLFVgNLP~~~TeeeL~ 156 (578)
T TIGR01648 134 ISV------------------------DNCRLFVGGIPKNKKREEIL 156 (578)
T ss_pred ccc------------------------cCceeEeecCCcchhhHHHH
Confidence 542 13799999999999998873
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.76 E-value=9.2e-18 Score=136.85 Aligned_cols=120 Identities=22% Similarity=0.281 Sum_probs=93.0
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 42 NSPLRVYVGSISF-ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 42 ~~~~~v~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
..+++|||+||++ .+++++|+++|+.||.|.++++++++ +|||||+|.+.++|+.|+..|+|..+.|+.|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4568999999998 69999999999999999999998863 68999999999999999999999999999999999
Q ss_pred cccCCCCCCCCC-----------cccchhhhhh--------HhhhccCcEEEcCCCcCCCccccC
Q psy2136 121 PHVQVGRPSNMP-----------QAQSVIDEIT--------EEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 121 a~~~~~~~~~~~-----------~~~~~~~~~~--------~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
++.......... .......+.. ....+..+|||+|||.++|+++||
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~ 412 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLK 412 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHH
Confidence 865432111100 0000000000 112346799999999999999985
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=7.6e-17 Score=126.54 Aligned_cols=83 Identities=27% Similarity=0.484 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
..+..|||+|||+.+++++|+++|.+||.|.+++++.++.+|.++|||||+|.+.++|..|+..|+|..+.|+.|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 33457999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q psy2136 122 HVQ 124 (166)
Q Consensus 122 ~~~ 124 (166)
..+
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 655
No 13
>KOG0145|consensus
Probab=99.72 E-value=5.6e-17 Score=118.76 Aligned_cols=104 Identities=24% Similarity=0.458 Sum_probs=93.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.+.+.|.=||.++++++++.+|...|.|.++++++|+.+|.+.||+||.|.+..+|++|+..|||..+..+.|+|.+|++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 35677878999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCcccc
Q psy2136 124 QVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L 165 (166)
....- ...+|||++||+.+|..||
T Consensus 121 Ss~~I------------------k~aNLYvSGlPktMtqkel 144 (360)
T KOG0145|consen 121 SSDSI------------------KDANLYVSGLPKTMTQKEL 144 (360)
T ss_pred Chhhh------------------cccceEEecCCccchHHHH
Confidence 53221 1379999999999998876
No 14
>KOG0131|consensus
Probab=99.72 E-value=1.1e-17 Score=116.43 Aligned_cols=108 Identities=26% Similarity=0.532 Sum_probs=93.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
.+...+||||||+..++++.|+++|-+.|++.++.+++++.++..+||||++|.+.++|+-|++.|+...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCcccc
Q psy2136 121 PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L 165 (166)
+... ... .....+|||+||.+.++|..|
T Consensus 86 as~~-~~n----------------l~vganlfvgNLd~~vDe~~L 113 (203)
T KOG0131|consen 86 ASAH-QKN----------------LDVGANLFVGNLDPEVDEKLL 113 (203)
T ss_pred cccc-ccc----------------ccccccccccccCcchhHHHH
Confidence 7511 110 011279999999998887654
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.71 E-value=4.1e-17 Score=135.37 Aligned_cols=124 Identities=24% Similarity=0.440 Sum_probs=97.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC----CeeEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG----GRNIK 117 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~----g~~l~ 117 (166)
...++|||+||+.++++++|+++|..||.|.++.++.+. +|+++|||||+|.+.++|..|++.|+|..+. |+.+.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 345789999999999999999999999999999999885 6889999999999999999999999999999 99999
Q ss_pred EEecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 118 VHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 118 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
|.++.....+......................+|||+||++++|+++||
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~ 303 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLR 303 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHH
Confidence 9887655433111111000000011112346789999999999999985
No 16
>KOG0122|consensus
Probab=99.71 E-value=1.3e-16 Score=115.68 Aligned_cols=84 Identities=27% Similarity=0.505 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
.++..+|-|.||+.++++.+|+++|..||+|.++.+.+++.||.++|||||.|.+.+.|++||..|+|+-++..-|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q psy2136 121 PHVQ 124 (166)
Q Consensus 121 a~~~ 124 (166)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 17
>KOG0105|consensus
Probab=99.70 E-value=6.3e-17 Score=113.05 Aligned_cols=121 Identities=22% Similarity=0.368 Sum_probs=92.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++|||||||.++.+.+|.++|.+||.|..|.+... .....||||+|++..+|+.||..-+|..++|.+|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4589999999999999999999999999999887543 2357799999999999999999999999999999999987
Q ss_pred cCCCCCCCCCc--------ccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 123 VQVGRPSNMPQ--------AQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 123 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
........... .........+...+..++.|.+||++.+++|||
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLK 133 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLK 133 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHH
Confidence 55311110000 000001111222345799999999999999986
No 18
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=2e-16 Score=95.85 Aligned_cols=70 Identities=39% Similarity=0.732 Sum_probs=66.5
Q ss_pred EEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 47 v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
|||+|||.++++++|+++|.+||.+..+.++.+ .++..+++|||+|.+.++|+.|+..|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5688999999999999999999999999999999875
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.67 E-value=5.2e-16 Score=126.62 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=87.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCeeCCeeEEEEec
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM--NGVMLGGRNIKVHFP 121 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l--~~~~~~g~~l~v~~a 121 (166)
+++|||+|||+.+++++|+++|.+||.|.++.++.+ +|+|||+|.+.++|+.|+..+ ++..+.|+.|.|.|+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 579999999999999999999999999999998753 579999999999999999874 678999999999998
Q ss_pred ccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 122 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
............ ..........+|||+||++.+|+++|+
T Consensus 76 ~~~~~~~~~~~~------~~~~~~~~~~~v~v~nl~~~vt~~~L~ 114 (481)
T TIGR01649 76 TSQEIKRDGNSD------FDSAGPNKVLRVIVENPMYPITLDVLY 114 (481)
T ss_pred CCcccccCCCCc------ccCCCCCceEEEEEcCCCCCCCHHHHH
Confidence 654321111000 000011123589999999999999874
No 20
>KOG0144|consensus
Probab=99.65 E-value=3.8e-16 Score=121.13 Aligned_cols=111 Identities=23% Similarity=0.413 Sum_probs=94.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeCC--ee
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGV-MLGG--RN 115 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~-~~~g--~~ 115 (166)
..+.+.-.+|||-+|..++|++|+.+|++||.+.+|.+++|+.++.++|+|||.|...++|.+|+.+|++. .+.| +.
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34445578999999999999999999999999999999999999999999999999999999999999884 4444 78
Q ss_pred EEEEecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 116 IKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 116 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
+.|.+|.....+- ....+||||-|++.+||.|+|
T Consensus 109 vqvk~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr 142 (510)
T KOG0144|consen 109 VQVKYADGERERI-----------------VEERKLFVGMLSKQCTENEVR 142 (510)
T ss_pred eeecccchhhhcc-----------------ccchhhhhhhccccccHHHHH
Confidence 8888886553332 123799999999999999875
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.64 E-value=2.1e-15 Score=123.80 Aligned_cols=120 Identities=26% Similarity=0.456 Sum_probs=84.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccC------------CCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPF------------GPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~------------g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 107 (166)
.....++|||||||+.+++++|.++|.++ +.|..+.+ ++.+|||||+|.+.+.|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 33445899999999999999999999874 24444444 3457899999999999999995 99
Q ss_pred CCeeCCeeEEEEecccCCCCCCCCCc-----ccchhh------hhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 108 GVMLGGRNIKVHFPHVQVGRPSNMPQ-----AQSVID------EITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 108 ~~~~~g~~l~v~~a~~~~~~~~~~~~-----~~~~~~------~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
|..+.|+.|+|.........+..... ...... ..........+|||+|||..+|+++|+
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~ 313 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIK 313 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 99999999999765543211110000 000000 001112345799999999999999884
No 22
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=4.5e-15 Score=90.23 Aligned_cols=70 Identities=31% Similarity=0.633 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 47 v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
|||+|||+++++++|.++|..+|.+..+.+..++. +..+|+|||+|.+.++|+.|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 88999999999999999999999999999998874
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.63 E-value=6.6e-15 Score=120.81 Aligned_cols=84 Identities=31% Similarity=0.548 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
...++|||+|||..+++++|+++|..||.|..+.++.++.+|.++|||||+|.+.+.|..|+..|+|..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccCC
Q psy2136 122 HVQV 125 (166)
Q Consensus 122 ~~~~ 125 (166)
....
T Consensus 373 ~~~~ 376 (509)
T TIGR01642 373 CVGA 376 (509)
T ss_pred ccCC
Confidence 6543
No 24
>KOG0149|consensus
Probab=99.63 E-value=8.2e-16 Score=111.03 Aligned_cols=79 Identities=25% Similarity=0.479 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
-++||||+|++.+..+.|+++|++||+|.+..++.|+.+|+++|||||.|++.++|.+|++. -.-.|+||+.++..|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 36899999999999999999999999999999999999999999999999999999999985 44678999988888754
No 25
>KOG0125|consensus
Probab=99.62 E-value=2.4e-15 Score=113.18 Aligned_cols=87 Identities=25% Similarity=0.552 Sum_probs=78.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
....+..++|+|+|+|+...+.||+..|.+||+|.+|.|+.+. +.++|||||.|.+.++|++|-.+|+|..+.||+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3455556899999999999999999999999999999999873 56899999999999999999999999999999999
Q ss_pred EEecccCCC
Q psy2136 118 VHFPHVQVG 126 (166)
Q Consensus 118 v~~a~~~~~ 126 (166)
|..+.....
T Consensus 168 Vn~ATarV~ 176 (376)
T KOG0125|consen 168 VNNATARVH 176 (376)
T ss_pred Eeccchhhc
Confidence 998865543
No 26
>KOG0109|consensus
Probab=99.61 E-value=1.1e-15 Score=113.37 Aligned_cols=94 Identities=22% Similarity=0.480 Sum_probs=85.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
-.+||||||.+.++.+|+.+|++||++..+.|+++ ||||..++...++.|+..|+|..|.|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36899999999999999999999999999999865 9999999999999999999999999999999987654
Q ss_pred CCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 125 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.+...+|+||||.+.|+.+|||
T Consensus 75 --------------------sk~stkl~vgNis~tctn~ElR 96 (346)
T KOG0109|consen 75 --------------------SKASTKLHVGNISPTCTNQELR 96 (346)
T ss_pred --------------------CCCccccccCCCCccccCHHHh
Confidence 1224799999999999999986
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=7.9e-15 Score=120.98 Aligned_cols=83 Identities=29% Similarity=0.478 Sum_probs=78.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++|||+||++++++++|+++|+.||.|.++++.+++.+|+++|||||+|.+.++|..|+..||+..+.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34799999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cCC
Q psy2136 123 VQV 125 (166)
Q Consensus 123 ~~~ 125 (166)
...
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 543
No 28
>KOG0127|consensus
Probab=99.59 E-value=6.7e-15 Score=117.23 Aligned_cols=80 Identities=26% Similarity=0.478 Sum_probs=73.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.-+|.|.|||+.+...+|+.+|..||.+..|.|++.+ .|+-.|||||+|....+|..|++.+|+..|.|+++.|.||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 3588999999999999999999999999999999765 466669999999999999999999999999999999999854
Q ss_pred C
Q psy2136 124 Q 124 (166)
Q Consensus 124 ~ 124 (166)
+
T Consensus 196 K 196 (678)
T KOG0127|consen 196 K 196 (678)
T ss_pred c
Confidence 3
No 29
>KOG0107|consensus
Probab=99.59 E-value=5.1e-15 Score=102.60 Aligned_cols=79 Identities=27% Similarity=0.544 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..+.||||||+..+++.+|...|..||++.+|.|... ..|||||+|++..+|+.|+..|+|..|.|.++.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3589999999999999999999999999999999765 48999999999999999999999999999999999987
Q ss_pred cCCC
Q psy2136 123 VQVG 126 (166)
Q Consensus 123 ~~~~ 126 (166)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5543
No 30
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.59 E-value=1.6e-14 Score=112.98 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEe
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG--RNIKVHF 120 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~ 120 (166)
..++|||+|||..+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.+ +.|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35689999999999999999999999999999999999899999999999999999999999999998875 7899998
Q ss_pred cccC
Q psy2136 121 PHVQ 124 (166)
Q Consensus 121 a~~~ 124 (166)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8754
No 31
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.7e-14 Score=107.13 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.++|||+||++.+++++|+++|..||.|.++.++.++. .+|||||+|.+.+.|+.|+. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998753 57899999999999999996 999999999999999864
Q ss_pred C
Q psy2136 124 Q 124 (166)
Q Consensus 124 ~ 124 (166)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=1.4e-14 Score=119.24 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=87.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccC--CCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPF--GPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~--g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.++|||+||+.++++++|+++|.+| |.|.++.++ ++||||+|.+.++|++|++.|++..|.|+.|+|.|+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4789999999999999999999999 999998765 459999999999999999999999999999999999
Q ss_pred ccCCCCCC------CCCc---ccchh-hhhhHhhhccCcEEEcCCCcCCCcccc
Q psy2136 122 HVQVGRPS------NMPQ---AQSVI-DEITEEAKLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 122 ~~~~~~~~------~~~~---~~~~~-~~~~~~~~~~~~l~V~nl~~~~tee~L 165 (166)
++...... .... .+... .-.........+++++|++++.+++.+
T Consensus 305 kp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~ 358 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPS 358 (578)
T ss_pred cCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccch
Confidence 86543210 0000 00011 111122334789999999998876644
No 33
>KOG0113|consensus
Probab=99.59 E-value=1.6e-14 Score=107.56 Aligned_cols=86 Identities=28% Similarity=0.608 Sum_probs=80.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 37 ~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
+....++-++|||+.|+..++++.|+..|..||+|..|.++.++.||+++|||||+|....+...|.+..+|..|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 34456777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecc
Q psy2136 117 KVHFPH 122 (166)
Q Consensus 117 ~v~~a~ 122 (166)
-|.+-.
T Consensus 174 ~VDvER 179 (335)
T KOG0113|consen 174 LVDVER 179 (335)
T ss_pred EEEecc
Confidence 997744
No 34
>KOG0127|consensus
Probab=99.57 E-value=1.2e-14 Score=115.87 Aligned_cols=123 Identities=18% Similarity=0.293 Sum_probs=99.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
+.+|||++||+.++.++|.++|+..|+|....+..++.++.++||+||.|...++++.|+....+..|.|+.|+|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47999999999999999999999999999999999998889999999999999999999999999999999999999875
Q ss_pred CCCCC-CCCCcccchhhhhhH-----h--hhccCcEEEcCCCcCCCccccC
Q psy2136 124 QVGRP-SNMPQAQSVIDEITE-----E--AKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 124 ~~~~~-~~~~~~~~~~~~~~~-----~--~~~~~~l~V~nl~~~~tee~Lr 166 (166)
..+.. ..............+ . ..+.-+|+|.|||+.|.+.+|+
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk 135 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLK 135 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHH
Confidence 54433 111111111111111 1 1225699999999999999874
No 35
>KOG0117|consensus
Probab=99.56 E-value=1.1e-14 Score=113.60 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=88.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCC-eeEEEEeeCCCC-CCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeeEEE
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGP-IKSINMSWDPIT-QKHKGFAFVEYDIPEAAQLSLEQMNG--VMLGGRNIKV 118 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~~~~~~-~~~~g~afv~f~~~~~a~~ai~~l~~--~~~~g~~l~v 118 (166)
.+++|||||+|.++++++|.+.+.+.++ +.+|.+...+.+ .+++|||||+|.++..|..|-.+|-. ..++|+.+.|
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 4589999999999999999999998874 456666665533 57999999999999999999888755 5678999999
Q ss_pred EecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 119 HFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 119 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.||.+....... .-..-+.|||.||+.++|||.|+
T Consensus 243 dWAep~~e~ded-------------~ms~VKvLYVRNL~~~tTeE~lk 277 (506)
T KOG0117|consen 243 DWAEPEEEPDED-------------TMSKVKVLYVRNLMESTTEETLK 277 (506)
T ss_pred eccCcccCCChh-------------hhhheeeeeeeccchhhhHHHHH
Confidence 999876543222 11124799999999999999874
No 36
>KOG0126|consensus
Probab=99.55 E-value=1.5e-15 Score=105.81 Aligned_cols=83 Identities=33% Similarity=0.586 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...++.-|||||||...++.+|.-.|++||.+.+|.+++|+.||+++||||+.|.+..+-..|+..|||..+.|+.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ecc
Q psy2136 120 FPH 122 (166)
Q Consensus 120 ~a~ 122 (166)
...
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 754
No 37
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=3.3e-14 Score=112.40 Aligned_cols=80 Identities=15% Similarity=0.400 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCH--HHHHHHHHHhCCCeeCCeeEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP--EAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~--~~a~~ai~~l~~~~~~g~~l~v 118 (166)
...+-+||||||++.+++++|...|..||.+.++.|++ .+| +|||||+|... ..+.+||..|+|..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34457999999999999999999999999999999994 456 89999999976 6899999999999999999999
Q ss_pred EecccC
Q psy2136 119 HFPHVQ 124 (166)
Q Consensus 119 ~~a~~~ 124 (166)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 998643
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=5.3e-14 Score=105.37 Aligned_cols=122 Identities=27% Similarity=0.494 Sum_probs=93.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.++|||+|||..+++++|.++|.+||.+..+.+..++.++..+|||||+|.+.+.|..|+..+++..+.|+++.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999653
Q ss_pred --CCCCCCCC----CcccchhhhhhHhhhccCcEEEcCCCcCCCcccc
Q psy2136 124 --QVGRPSNM----PQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 124 --~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L 165 (166)
........ ...................+++++++...+..++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEEL 242 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHH
Confidence 11111110 0000001111122334568888888888776654
No 39
>KOG4207|consensus
Probab=99.54 E-value=1.3e-14 Score=103.16 Aligned_cols=82 Identities=24% Similarity=0.540 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
+....|-|-||...++.++|+..|++||.|-+|.|++++.|+.++|||||.|.+..+|+.|+.+|+|..++|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cc
Q psy2136 122 HV 123 (166)
Q Consensus 122 ~~ 123 (166)
+.
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 63
No 40
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.54 E-value=6.3e-14 Score=113.68 Aligned_cols=79 Identities=42% Similarity=0.784 Sum_probs=76.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
.++|||+|||..+++++|+.+|..||.|..+.++.++.+|+++|||||+|.+.+.|..|+..|+|..+.|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 5899999999999999999999999999999999999889999999999999999999999999999999999999965
No 41
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=9.8e-14 Score=83.55 Aligned_cols=71 Identities=39% Similarity=0.797 Sum_probs=66.1
Q ss_pred EEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 46 ~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
+|||+|||..++.++|+++|.+||.+..+.+..++ +.++|+||++|.+...|+.|+..+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999988776 678899999999999999999999999999998876
No 42
>KOG0111|consensus
Probab=99.54 E-value=1e-14 Score=104.67 Aligned_cols=86 Identities=37% Similarity=0.644 Sum_probs=80.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
...++||||+|-..+++.-|...|-.||.|..|.++.|-.+++.+|||||+|...++|.+||..||+.++.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy2136 122 HVQVGR 127 (166)
Q Consensus 122 ~~~~~~ 127 (166)
++...+
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 877543
No 43
>KOG0121|consensus
Probab=99.53 E-value=2.6e-14 Score=94.35 Aligned_cols=82 Identities=32% Similarity=0.510 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
...+++||||||+..++++.|.++|.+.|+|..|.+-.++.+..+.||+||+|...++|+.|++-++|..+..+.|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34568999999999999999999999999999999999988888999999999999999999999999999999999998
Q ss_pred cc
Q psy2136 121 PH 122 (166)
Q Consensus 121 a~ 122 (166)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 64
No 44
>KOG0148|consensus
Probab=99.51 E-value=1.4e-13 Score=101.47 Aligned_cols=81 Identities=37% Similarity=0.635 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
...+++++||+||++..+++++|++.|..||+|.+|++.++ +||+||.|.+++.|..||..+|+.++.|+.++.
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 45667899999999999999999999999999999999887 679999999999999999999999999999999
Q ss_pred EecccCC
Q psy2136 119 HFPHVQV 125 (166)
Q Consensus 119 ~~a~~~~ 125 (166)
.|.+...
T Consensus 233 sWGKe~~ 239 (321)
T KOG0148|consen 233 SWGKEGD 239 (321)
T ss_pred eccccCC
Confidence 9987543
No 45
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=3.8e-13 Score=98.55 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
.+.+|||+||++.+++++|+++|..+|.|.++.++++. +..+||||+|.+.+.++.|+. |+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999884 456899999999999999996 99999999999997755
No 46
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=2.3e-13 Score=81.55 Aligned_cols=70 Identities=43% Similarity=0.705 Sum_probs=65.8
Q ss_pred EcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 49 VGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 49 v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
|+|||..+++++|+++|.+||.+..+.+..++.+++++|+|||+|.+.+.|..|+..+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999999998877889999999999999999999999999999998876
No 47
>KOG0108|consensus
Probab=99.49 E-value=7.3e-14 Score=111.23 Aligned_cols=82 Identities=30% Similarity=0.585 Sum_probs=78.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
+.|||||+|+.+++++|..+|...|.|.++++..|+.+|+.+||||++|.+.+.+..|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred CC
Q psy2136 125 VG 126 (166)
Q Consensus 125 ~~ 126 (166)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 48
>KOG0130|consensus
Probab=99.48 E-value=1e-13 Score=92.40 Aligned_cols=83 Identities=31% Similarity=0.514 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
.+-.|||.++....++++|.+.|..||+|.++.+-.++.||.-+|||.|+|.....|++|+..+||..+.|..+.|.|..
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q psy2136 123 VQV 125 (166)
Q Consensus 123 ~~~ 125 (166)
...
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 543
No 49
>KOG4205|consensus
Probab=99.48 E-value=8.5e-14 Score=106.57 Aligned_cols=111 Identities=27% Similarity=0.500 Sum_probs=92.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
+.+.+|||+|++.++++.|+.+|.+||.+..+.+++++.+++++||+||+|.+.....+++. ...+.+.|+.+.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56899999999999999999999999999999999999999999999999998887777776 36688999998887765
Q ss_pred cCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 123 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
+.......... ...+++||++||.+++++++|
T Consensus 84 ~r~~~~~~~~~------------~~tkkiFvGG~~~~~~e~~~r 115 (311)
T KOG4205|consen 84 SREDQTKVGRH------------LRTKKIFVGGLPPDTTEEDFK 115 (311)
T ss_pred Ccccccccccc------------cceeEEEecCcCCCCchHHHh
Confidence 44332222111 146799999999999999986
No 50
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=1.3e-12 Score=78.90 Aligned_cols=74 Identities=41% Similarity=0.748 Sum_probs=67.9
Q ss_pred EEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 46 ~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
+|+|+|||..+++++|+++|..+|.+..+.+..++.+ ..+|+||++|.+.+.|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887644 6789999999999999999999999999999998864
No 51
>KOG1457|consensus
Probab=99.41 E-value=2.5e-12 Score=92.57 Aligned_cols=85 Identities=16% Similarity=0.294 Sum_probs=68.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEee-CCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---Cee
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSW-DPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG---GRN 115 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~-~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~---g~~ 115 (166)
..+..+++||++||.++...+|+.+|..|.......+.. ++...-.+.+||+.|.+++.|++|+..|||+.|+ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 445579999999999999999999999887665544433 2222234579999999999999999999999998 688
Q ss_pred EEEEecccC
Q psy2136 116 IKVHFPHVQ 124 (166)
Q Consensus 116 l~v~~a~~~ 124 (166)
|++++++..
T Consensus 110 LhiElAKSN 118 (284)
T KOG1457|consen 110 LHIELAKSN 118 (284)
T ss_pred eEeeehhcC
Confidence 999988644
No 52
>KOG0114|consensus
Probab=99.40 E-value=3.2e-12 Score=81.56 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=72.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
...+..++.+||.|||.+++.++..++|.+||.|..|++-..+ .-+|-|||.|++..+|..|+..|+|.-+.++-+.
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 3445556899999999999999999999999999999985543 3589999999999999999999999999999999
Q ss_pred EEecc
Q psy2136 118 VHFPH 122 (166)
Q Consensus 118 v~~a~ 122 (166)
|-+..
T Consensus 89 vlyyq 93 (124)
T KOG0114|consen 89 VLYYQ 93 (124)
T ss_pred EEecC
Confidence 98754
No 53
>KOG4206|consensus
Probab=99.40 E-value=1.4e-12 Score=94.02 Aligned_cols=79 Identities=25% Similarity=0.470 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHH----hcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 44 PLRVYVGSISFELKEDTIRQ----AFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~----~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
+.++||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|-.|++.|+|..+.|+.+++.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999988777 999999999887754 57889999999999999999999999999999999999
Q ss_pred ecccCC
Q psy2136 120 FPHVQV 125 (166)
Q Consensus 120 ~a~~~~ 125 (166)
+|+...
T Consensus 86 yA~s~s 91 (221)
T KOG4206|consen 86 YAKSDS 91 (221)
T ss_pred cccCcc
Confidence 997553
No 54
>KOG0144|consensus
Probab=99.40 E-value=5.8e-13 Score=103.70 Aligned_cols=86 Identities=27% Similarity=0.513 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-eeCC--eeEEEE
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGV-MLGG--RNIKVH 119 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~-~~~g--~~l~v~ 119 (166)
..+.+|||.|+..++|.+++..|.+||.|.+++|+++. .+.+||+|||.|+..+.|..||+.|||. .+.| .+|-|.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 35789999999999999999999999999999999996 5889999999999999999999999994 4544 789999
Q ss_pred ecccCCCCCC
Q psy2136 120 FPHVQVGRPS 129 (166)
Q Consensus 120 ~a~~~~~~~~ 129 (166)
||++++.+..
T Consensus 202 FADtqkdk~~ 211 (510)
T KOG0144|consen 202 FADTQKDKDG 211 (510)
T ss_pred ecccCCCchH
Confidence 9988765543
No 55
>KOG0123|consensus
Probab=99.37 E-value=3.1e-12 Score=100.82 Aligned_cols=92 Identities=25% Similarity=0.539 Sum_probs=83.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
..+||| +++++..|.+.|..+|++.++++.++. + +.|||||.|.+..+|++||..+|...+.|+++++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368998 899999999999999999999999997 6 9999999999999999999999999999999999998543
Q ss_pred CCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCcccc
Q psy2136 125 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L 165 (166)
.. .+||.||+++++..+|
T Consensus 76 ~~-----------------------~~~i~nl~~~~~~~~~ 93 (369)
T KOG0123|consen 76 PS-----------------------LVFIKNLDESIDNKSL 93 (369)
T ss_pred Cc-----------------------eeeecCCCcccCcHHH
Confidence 22 1999999999988765
No 56
>KOG0145|consensus
Probab=99.35 E-value=9.3e-12 Score=91.61 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
.+-.|||-||.++.++.-|+++|..||.+.+|++++|..+.+.+||+||...+-++|..||..|||..+.++.|.|.+..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q psy2136 123 V 123 (166)
Q Consensus 123 ~ 123 (166)
.
T Consensus 357 n 357 (360)
T KOG0145|consen 357 N 357 (360)
T ss_pred C
Confidence 3
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=1.3e-11 Score=71.69 Aligned_cols=56 Identities=39% Similarity=0.679 Sum_probs=50.3
Q ss_pred HHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 61 IRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 61 l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
|+++|++||.|.++.+..++ +++|||+|.+.++|+.|+..|+|..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987653 589999999999999999999999999999999985
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=1.8e-11 Score=74.46 Aligned_cols=61 Identities=23% Similarity=0.532 Sum_probs=54.6
Q ss_pred HHHHHHhcc----cCCCeeEEE-EeeCCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 58 EDTIRQAFL----PFGPIKSIN-MSWDPIT--QKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 58 ~~~l~~~f~----~~g~i~~v~-i~~~~~~--~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
+++|+++|. .||.+.++. +..++.+ +.++|||||.|.+.++|..|+..|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999985 7777666 889999999999999999999999999999999875
No 59
>KOG0123|consensus
Probab=99.29 E-value=1e-11 Score=97.87 Aligned_cols=109 Identities=26% Similarity=0.515 Sum_probs=89.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
...+||.||++.++..+|.++|..||.|.+++++.+.. | ++|| ||+|.+.+.|++|+..+||..+.|+++.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 34599999999999999999999999999999999863 4 8999 9999999999999999999999999999987765
Q ss_pred CCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCcccc
Q psy2136 124 QVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L 165 (166)
...+...... .......+||.|++.+.++++|
T Consensus 153 ~~er~~~~~~----------~~~~~t~v~vk~~~~~~~~~~l 184 (369)
T KOG0123|consen 153 KEEREAPLGE----------YKKRFTNVYVKNLEEDSTDEEL 184 (369)
T ss_pred hhhhcccccc----------hhhhhhhhheeccccccchHHH
Confidence 4433222111 2223468888888888877765
No 60
>KOG0146|consensus
Probab=99.27 E-value=6.9e-12 Score=92.62 Aligned_cols=88 Identities=28% Similarity=0.486 Sum_probs=81.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
..+.+++|.+||-.||.+..+.+|...|..||.|.+.++..|+.|..++.|+||.|.+..+++.||..|||..|+.++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCC
Q psy2136 118 VHFPHVQV 125 (166)
Q Consensus 118 v~~a~~~~ 125 (166)
|...+++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 98876653
No 61
>KOG0110|consensus
Probab=99.25 E-value=2e-11 Score=100.16 Aligned_cols=113 Identities=23% Similarity=0.434 Sum_probs=88.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQ---KHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~---~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
+++||.||++..+.+++...|..+|.|.++.|...+... .+.|||||+|.+.+.|+.|+..|+|..++|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887765321 25699999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 122 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
... +...... ..........|.|.|||+..+-.++|
T Consensus 596 ~~k---~~~~~gK------~~~~kk~~tKIlVRNipFeAt~rEVr 631 (725)
T KOG0110|consen 596 ENK---PASTVGK------KKSKKKKGTKILVRNIPFEATKREVR 631 (725)
T ss_pred cCc---ccccccc------ccccccccceeeeeccchHHHHHHHH
Confidence 711 1111100 11112225799999999998877664
No 62
>KOG0147|consensus
Probab=99.25 E-value=1.3e-11 Score=98.65 Aligned_cols=79 Identities=41% Similarity=0.696 Sum_probs=74.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.++|||||..+++++.|+..|+.||.|..|.++++..+|.++||+|++|.+.+.|.+|++.|||..+-|+.|+|.....
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 3499999999999999999999999999999999988999999999999999999999999999999999999977543
No 63
>KOG0131|consensus
Probab=99.24 E-value=1.9e-11 Score=85.51 Aligned_cols=89 Identities=29% Similarity=0.470 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeE-EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKS-INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
..+.+..+|||||.+.+++.-|.+.|+.||.+.+ .++++++.+|+++||||+.|.+.+.+.+|+++++|..+..+++.|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 4445589999999999999999999999999876 499999999999999999999999999999999999999999999
Q ss_pred EecccCCCCC
Q psy2136 119 HFPHVQVGRP 128 (166)
Q Consensus 119 ~~a~~~~~~~ 128 (166)
.+++.+..+.
T Consensus 172 ~ya~k~~~kg 181 (203)
T KOG0131|consen 172 SYAFKKDTKG 181 (203)
T ss_pred EEEEecCCCc
Confidence 9998765554
No 64
>KOG1190|consensus
Probab=99.23 E-value=7.9e-11 Score=91.42 Aligned_cols=118 Identities=19% Similarity=0.319 Sum_probs=92.3
Q ss_pred CCEEEEcCCCC-CCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 44 PLRVYVGSISF-ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 44 ~~~v~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
+..|.|.||.. .++.+.|..+|..||.+.+|+|..++ +.-|.|.+.+...|+-|+..|+|+.+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888999975 49999999999999999999999875 3579999999999999999999999999999999988
Q ss_pred cCCCCCCCCCcc---------cchhhhh--------hHhhhccCcEEEcCCCcCCCccccC
Q psy2136 123 VQVGRPSNMPQA---------QSVIDEI--------TEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 123 ~~~~~~~~~~~~---------~~~~~~~--------~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
...-......+. ...+.+. ...-.+..+|+++|+|.+++||||+
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk 432 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLK 432 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHH
Confidence 654332222211 1111111 1122456799999999999999985
No 65
>KOG4208|consensus
Probab=99.19 E-value=1.2e-10 Score=83.03 Aligned_cols=84 Identities=29% Similarity=0.417 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccC-CCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPF-GPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~-g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....-+|+..+|....+.++..+|.++ |.+..+++.+++.||.++|||||+|.+.+.|..|.+.||+.-+.++.|.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3344678999999999999999999988 788888998999999999999999999999999999999999999999988
Q ss_pred ecccC
Q psy2136 120 FPHVQ 124 (166)
Q Consensus 120 ~a~~~ 124 (166)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 76544
No 66
>KOG0415|consensus
Probab=99.18 E-value=6.9e-11 Score=90.36 Aligned_cols=80 Identities=23% Similarity=0.391 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
+...+||..|.+-++.++|.-.|+.||+|.++.++++..||.+..||||+|.+.++.++|..+|+++-|.+++|+|.++.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999998864
No 67
>KOG0153|consensus
Probab=99.18 E-value=2e-10 Score=87.47 Aligned_cols=80 Identities=30% Similarity=0.496 Sum_probs=69.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeeE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM-NGVMLGGRNI 116 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l-~~~~~~g~~l 116 (166)
.+......++|||+|...+.+.+|+++|.+||.|.++.+... ++.|||+|....+|+.|.+.+ +.+.+.|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 344445589999999999999999999999999999998765 459999999999999887765 5577889999
Q ss_pred EEEeccc
Q psy2136 117 KVHFPHV 123 (166)
Q Consensus 117 ~v~~a~~ 123 (166)
+|.|+++
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999987
No 68
>KOG0147|consensus
Probab=99.16 E-value=5.1e-12 Score=100.96 Aligned_cols=122 Identities=19% Similarity=0.324 Sum_probs=97.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
++...++||+.-+....+..+|.+||...|++..|.++.++.++.++|.+||+|.+.+....|+. |.|.-+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 44456899999999999999999999999999999999999999999999999999999999985 89999999999998
Q ss_pred ecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 120 FPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 120 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
......++.......-. .+....++.+||||||.++++|++||
T Consensus 254 ~sEaeknr~a~~s~a~~----~k~~~~p~~rl~vgnLHfNite~~lr 296 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQ----GKGFTGPMRRLYVGNLHFNITEDMLR 296 (549)
T ss_pred ccHHHHHHHHhcccccc----ccccccchhhhhhcccccCchHHHHh
Confidence 76554443222111110 01122334459999999999999986
No 69
>KOG0146|consensus
Probab=99.07 E-value=3.5e-10 Score=83.73 Aligned_cols=93 Identities=25% Similarity=0.502 Sum_probs=78.6
Q ss_pred CCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-e
Q psy2136 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVM-L 111 (166)
Q Consensus 33 ~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~-~ 111 (166)
.|.+.+.+..+.+.+|||-|...-.|++++.+|..||.|.++.+.+.+ .|.++|+|||.|.++.+|+.||..|+|.. +
T Consensus 8 kpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTm 86 (371)
T KOG0146|consen 8 KPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTM 86 (371)
T ss_pred cccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccC
Confidence 344555556567899999999999999999999999999999998886 58899999999999999999999999953 3
Q ss_pred CC--eeEEEEecccCCC
Q psy2136 112 GG--RNIKVHFPHVQVG 126 (166)
Q Consensus 112 ~g--~~l~v~~a~~~~~ 126 (166)
.| ..|.|.+++..+.
T Consensus 87 pGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 87 PGASSSLVVKFADTDKE 103 (371)
T ss_pred CCCccceEEEeccchHH
Confidence 33 6788888876544
No 70
>KOG4212|consensus
Probab=99.04 E-value=1.6e-09 Score=85.12 Aligned_cols=78 Identities=24% Similarity=0.476 Sum_probs=71.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcc-cCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFL-PFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~-~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
.+.+||.|+|++..=.+|+++|. +-|.|..+.+..|. +|+++|+|.|+|++.+.+++|++.|+.+++.|+.|.|....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 46799999999999999999998 77899999999995 79999999999999999999999999999999999997643
No 71
>KOG0109|consensus
Probab=99.02 E-value=7.5e-10 Score=82.74 Aligned_cols=78 Identities=23% Similarity=0.469 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
.....+++|||+.+.++..+++..|++||++.+..|.++ |+||.|.-.+.|..|++.|++.++.|++++|+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 445678999999999999999999999999999999755 999999999999999999999999999999998
Q ss_pred cccCCC
Q psy2136 121 PHVQVG 126 (166)
Q Consensus 121 a~~~~~ 126 (166)
+....+
T Consensus 147 stsrlr 152 (346)
T KOG0109|consen 147 STSRLR 152 (346)
T ss_pred eccccc
Confidence 865543
No 72
>KOG0132|consensus
Probab=99.00 E-value=1.1e-09 Score=90.89 Aligned_cols=76 Identities=24% Similarity=0.398 Sum_probs=70.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
+++||||+|+.++++.+|.++|+.||.|.+|.++. ++|+|||.....++|.+|+.+|+.+.+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 48999999999999999999999999999998864 478999999999999999999999999999999999865
Q ss_pred CC
Q psy2136 124 QV 125 (166)
Q Consensus 124 ~~ 125 (166)
+.
T Consensus 495 ~G 496 (894)
T KOG0132|consen 495 KG 496 (894)
T ss_pred CC
Confidence 54
No 73
>KOG0106|consensus
Probab=99.00 E-value=4.7e-10 Score=81.50 Aligned_cols=114 Identities=22% Similarity=0.404 Sum_probs=85.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
..||||+||+...+.++..+|..||.+..+.+. .||+||+|.+..+|..|+..|++..+.|-++.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999988874 458999999999999999999999999988999998743
Q ss_pred CCCCCC-CC-cccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 125 VGRPSN-MP-QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 125 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
...... .. .................+++|.+++..+.+++|+
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~ 117 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLK 117 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHh
Confidence 221111 00 1111122222233446788889998888887763
No 74
>KOG0116|consensus
Probab=98.95 E-value=6.1e-09 Score=82.94 Aligned_cols=81 Identities=25% Similarity=0.421 Sum_probs=69.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
..+|||+|||.+++.++|+++|.+||.|....|....-.++...||||+|.+...++.++.+ +-..++++++.|+..++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 35699999999999999999999999999887776543344448999999999999999997 68889999999998765
Q ss_pred CC
Q psy2136 124 QV 125 (166)
Q Consensus 124 ~~ 125 (166)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 43
No 75
>KOG4211|consensus
Probab=98.94 E-value=8.9e-09 Score=81.83 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=83.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
...-|-+.+||+++++++|.+||...+ |.++.+.+ .+|+..|-|||+|.+.++++.|+++ +...+..+-|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 345677889999999999999999886 77766655 4699999999999999999999994 8888888889987765
Q ss_pred cCCCCCCCCCcccchhhhhhHhh-hccCcEEEcCCCcCCCcccc
Q psy2136 123 VQVGRPSNMPQAQSVIDEITEEA-KLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~V~nl~~~~tee~L 165 (166)
...-.....+.. ... ...-.|-+.+||++||++||
T Consensus 85 ~~e~d~~~~~~g--------~~s~~~d~vVRLRGLPfscte~dI 120 (510)
T KOG4211|consen 85 GAEADWVMRPGG--------PNSSANDGVVRLRGLPFSCTEEDI 120 (510)
T ss_pred CccccccccCCC--------CCCCCCCceEEecCCCccCcHHHH
Confidence 432211111100 000 12357778999999999997
No 76
>KOG0110|consensus
Probab=98.94 E-value=9.5e-10 Score=90.49 Aligned_cols=82 Identities=24% Similarity=0.497 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
...|+|.|+|+..+..+++.+|..||.+.+++++.....+.++|||||+|-..+.|.+|+..|....+.|++|.++||+.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 57899999999999999999999999999999998754456799999999999999999999999999999999999975
Q ss_pred CC
Q psy2136 124 QV 125 (166)
Q Consensus 124 ~~ 125 (166)
..
T Consensus 693 d~ 694 (725)
T KOG0110|consen 693 DN 694 (725)
T ss_pred ch
Confidence 53
No 77
>KOG4205|consensus
Probab=98.92 E-value=5.3e-09 Score=80.40 Aligned_cols=85 Identities=18% Similarity=0.366 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
....||||+||.++++.+++++|.+||.|..+.++.++.+.+.+||+||.|.+.+.+..++. ..-+.|.++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35699999999999999999999999999999999999999999999999999999998887 47789999999999987
Q ss_pred cCCCCC
Q psy2136 123 VQVGRP 128 (166)
Q Consensus 123 ~~~~~~ 128 (166)
++....
T Consensus 175 pk~~~~ 180 (311)
T KOG4205|consen 175 PKEVMQ 180 (311)
T ss_pred chhhcc
Confidence 765443
No 78
>KOG0124|consensus
Probab=98.89 E-value=4.4e-09 Score=81.03 Aligned_cols=78 Identities=31% Similarity=0.525 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
..+|||..+.++.++++|+..|+-||+|..+.+.+++..+.++||+|++|.+......|+..+|-..++|.-|+|-..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 479999999999999999999999999999999999988899999999999999999999999999999999998654
No 79
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.87 E-value=2.7e-08 Score=63.84 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=68.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhccc--CCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC----CeeEEE
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLP--FGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG----GRNIKV 118 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~--~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~----g~~l~v 118 (166)
++|+|.|+|...+.+.|.+.+.. .|..-.+.++.|..++.+.|||||.|.+++.|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999998887753 367777899999989999999999999999999999999997765 466778
Q ss_pred EecccC
Q psy2136 119 HFPHVQ 124 (166)
Q Consensus 119 ~~a~~~ 124 (166)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887644
No 80
>KOG0151|consensus
Probab=98.83 E-value=2.4e-08 Score=82.50 Aligned_cols=85 Identities=19% Similarity=0.456 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT---QKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~---~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.+..+.+||+||++.++++.|-..|..||++.+++|++.+.. .+.+-++||.|-+..+|++|++.|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 344579999999999999999999999999999999986522 34567999999999999999999999999999999
Q ss_pred EEecccCC
Q psy2136 118 VHFPHVQV 125 (166)
Q Consensus 118 v~~a~~~~ 125 (166)
+.|++.-.
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99986443
No 81
>KOG0129|consensus
Probab=98.82 E-value=2.5e-08 Score=79.70 Aligned_cols=120 Identities=22% Similarity=0.397 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCC---Ccce---EEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQ---KHKG---FAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~---~~~g---~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
-.+.||||+||++++|+.|...|..||.+. +.|+...+.. -.+| |+|+.|+++...+.-+.+... .-.+.-+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~yf 335 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYYF 335 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceEE
Confidence 357999999999999999999999999775 7777432221 1456 999999998887777665432 1111222
Q ss_pred EEEecccC----CCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCcccc
Q psy2136 117 KVHFPHVQ----VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 117 ~v~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L 165 (166)
.|+-..-+ .-+||...+..-..+ ..+...+.+|||||+||--++-++|
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d-~sq~lDprrTVFVGgvprpl~A~eL 387 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLD-HNQPIDPRRTVFVGGLPRPLTAEEL 387 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhc-cCcccCccceEEecCCCCcchHHHH
Confidence 22221111 123444443333333 3445566899999999999998876
No 82
>KOG0533|consensus
Probab=98.80 E-value=3.2e-08 Score=73.45 Aligned_cols=82 Identities=22% Similarity=0.465 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.....|+|.||+..+.+++|+++|..||.+..+.+..++ +|.+.|.|-|.|...++|..|++.++++.++|+.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 334789999999999999999999999988888888875 6899999999999999999999999999999999998776
Q ss_pred ccC
Q psy2136 122 HVQ 124 (166)
Q Consensus 122 ~~~ 124 (166)
...
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 544
No 83
>KOG1456|consensus
Probab=98.76 E-value=2.8e-07 Score=71.37 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=93.9
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 40 NSNSPLRVYVGSISFE-LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~-~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
...+++.++|.+|... ++.+.|.++|+.||.+..|++|+.+ .|-|.|+..+..+.++|+..|++..+.|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 4455689999999865 8889999999999999999999864 678999999999999999999999999999999
Q ss_pred EecccCCCC-----------CCCCCcccchhhhh--------hHhhhccCcEEEcCCCcCCCcccc
Q psy2136 119 HFPHVQVGR-----------PSNMPQAQSVIDEI--------TEEAKLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 119 ~~a~~~~~~-----------~~~~~~~~~~~~~~--------~~~~~~~~~l~V~nl~~~~tee~L 165 (166)
+.++..--. ++.+....+..++. .....+.+.|+.-|.|..+|||.|
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l 423 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQL 423 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHH
Confidence 988744321 22222222222222 123456889999999999999875
No 84
>KOG4661|consensus
Probab=98.76 E-value=6.5e-08 Score=78.48 Aligned_cols=85 Identities=16% Similarity=0.277 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
..-++.+||++|...+...+|+++|.+||.+.-.+++.+..+...+.|+||..+....|.+||..|+...+-|+-|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 33468999999999999999999999999999999998877777899999999999999999999999999999999998
Q ss_pred cccCC
Q psy2136 121 PHVQV 125 (166)
Q Consensus 121 a~~~~ 125 (166)
++...
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87543
No 85
>KOG4209|consensus
Probab=98.76 E-value=1.9e-08 Score=74.62 Aligned_cols=85 Identities=24% Similarity=0.408 Sum_probs=77.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
...-+.+.+||||+....+.+++...|+.+|.+..+.+..++.++..+||+|++|.+.+..+.++. |++..+.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 455566899999999999998899999999999999999999888899999999999999999999 9999999999999
Q ss_pred EecccC
Q psy2136 119 HFPHVQ 124 (166)
Q Consensus 119 ~~a~~~ 124 (166)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 886533
No 86
>KOG1548|consensus
Probab=98.71 E-value=1.5e-07 Score=71.99 Aligned_cols=86 Identities=21% Similarity=0.324 Sum_probs=75.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKS--------INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVM 110 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~ 110 (166)
+....+..|||+|||.++|.+++..+|.++|.|.. +++.++.. |+.+|=|.+.|...++...|+..|++..
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccc
Confidence 34455678999999999999999999999997753 77888764 8999999999999999999999999999
Q ss_pred eCCeeEEEEecccCC
Q psy2136 111 LGGRNIKVHFPHVQV 125 (166)
Q Consensus 111 ~~g~~l~v~~a~~~~ 125 (166)
+.|+.++|+.|+-+.
T Consensus 208 ~rg~~~rVerAkfq~ 222 (382)
T KOG1548|consen 208 LRGKKLRVERAKFQM 222 (382)
T ss_pred ccCcEEEEehhhhhh
Confidence 999999999987443
No 87
>KOG4454|consensus
Probab=98.61 E-value=1.6e-08 Score=72.95 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=67.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
.++|||+|+...++++-|.++|-+.|++..+.|..++ .++.+ ||||.|.++...+-|+..+||..+.+..+++.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3799999999999999999999999999999998875 35555 999999999999999999999999988887755
No 88
>KOG4212|consensus
Probab=98.59 E-value=2.1e-07 Score=73.36 Aligned_cols=76 Identities=28% Similarity=0.468 Sum_probs=68.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||.|||.++|=..|++-|..+|.+....|+. +|+++| -|.|.+.+.|+.|+..|++..+.|+.|.|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 344458999999999999999999999999999998854 477776 899999999999999999999999999997
Q ss_pred e
Q psy2136 120 F 120 (166)
Q Consensus 120 ~ 120 (166)
+
T Consensus 607 y 607 (608)
T KOG4212|consen 607 Y 607 (608)
T ss_pred e
Confidence 6
No 89
>KOG0120|consensus
Probab=98.56 E-value=1.3e-07 Score=76.50 Aligned_cols=89 Identities=30% Similarity=0.572 Sum_probs=80.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
........+|||+||...++..+.+++..||++....+..+..+|.++||||.+|.+......|+..|+|+.+.+..+.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 34455678999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
..|......
T Consensus 364 q~A~~g~~~ 372 (500)
T KOG0120|consen 364 QRAIVGASN 372 (500)
T ss_pred ehhhccchh
Confidence 888655443
No 90
>KOG4660|consensus
Probab=98.53 E-value=1e-07 Score=76.86 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=64.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
....++|+|-|||..++.++|...|..||.|..|+. +...+|..||+|-|...|++|+++|++..+.|++++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 344589999999999999999999999999998665 344688999999999999999999999999998887
No 91
>KOG0226|consensus
Probab=98.50 E-value=1.7e-07 Score=69.08 Aligned_cols=81 Identities=27% Similarity=0.521 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
....+||.|.|..+.+.+.|-..|.+|-.-...++++++.+|+++||+||.|.+..++..|+..++|..++.+.|+++-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 33479999999999999999999999987777888999999999999999999999999999999999999988887554
Q ss_pred c
Q psy2136 122 H 122 (166)
Q Consensus 122 ~ 122 (166)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.10 E-value=1.7e-05 Score=49.14 Aligned_cols=68 Identities=24% Similarity=0.321 Sum_probs=46.0
Q ss_pred CEEEEcCCCCCCCHHHHH----HhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 45 LRVYVGSISFELKEDTIR----QAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~----~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
..+||.|||.+.+...|+ +++.-+| .+.+|. .+-|++.|.+.+.|.+|.+.|+|-.+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 358999999998887655 4555554 555442 3579999999999999999999999999999999
Q ss_pred ecc
Q psy2136 120 FPH 122 (166)
Q Consensus 120 ~a~ 122 (166)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 93
>KOG4206|consensus
Probab=97.96 E-value=8.3e-05 Score=54.15 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=67.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeeEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG-GRNIKV 118 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l~v 118 (166)
...+...+|+.|+|..++.+.+..+|++|.....++++... .+.|||+|.+...+..|...+++..+. .+.+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 34556789999999999999999999999988889887643 679999999999999999999998887 777887
Q ss_pred Eecc
Q psy2136 119 HFPH 122 (166)
Q Consensus 119 ~~a~ 122 (166)
.+++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 7653
No 94
>KOG1995|consensus
Probab=97.90 E-value=1.2e-05 Score=62.08 Aligned_cols=82 Identities=29% Similarity=0.331 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCee--------EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIK--------SINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRN 115 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~--------~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~ 115 (166)
.-+|||-+|+..+++.+|.++|.+.|.|. .|.+.+++.|++.+|-|.|.|.+...|+.|+.-+++..+.+..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 46899999999999999999999998663 2677888899999999999999999999999999999999999
Q ss_pred EEEEecccCC
Q psy2136 116 IKVHFPHVQV 125 (166)
Q Consensus 116 l~v~~a~~~~ 125 (166)
|+|..+....
T Consensus 146 ikvs~a~~r~ 155 (351)
T KOG1995|consen 146 IKVSLAERRT 155 (351)
T ss_pred chhhhhhhcc
Confidence 9998876444
No 95
>KOG1457|consensus
Probab=97.90 E-value=1.3e-05 Score=58.36 Aligned_cols=64 Identities=14% Similarity=0.313 Sum_probs=52.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG 112 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 112 (166)
.++||.||..++++++|+.+|..|.....++|.. ......||++|++.+.|..||..|+|..+.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 4899999999999999999999997555555532 234569999999999999999999987654
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.84 E-value=7.9e-05 Score=48.73 Aligned_cols=59 Identities=24% Similarity=0.419 Sum_probs=38.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGV 109 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~ 109 (166)
+.|.|.+++..++.++|+..|.+||.|..|.+..+ ..-|||.|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 56889999999999999999999999999988543 348999999999999998876443
No 97
>KOG4210|consensus
Probab=97.84 E-value=2.1e-05 Score=60.27 Aligned_cols=85 Identities=25% Similarity=0.525 Sum_probs=74.1
Q ss_pred CCCCCCEEE-EcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 40 NSNSPLRVY-VGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 40 ~~~~~~~v~-v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
......++| +++++.+++.++|+.+|...|.|..++++.++.++..+||||+.|........++.. +...+.++.+.+
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 333445666 999999999999999999999999999999999999999999999999999999886 788888999998
Q ss_pred EecccCC
Q psy2136 119 HFPHVQV 125 (166)
Q Consensus 119 ~~a~~~~ 125 (166)
....+..
T Consensus 259 ~~~~~~~ 265 (285)
T KOG4210|consen 259 EEDEPRP 265 (285)
T ss_pred ccCCCCc
Confidence 8876543
No 98
>KOG0128|consensus
Probab=97.79 E-value=3.2e-06 Score=71.48 Aligned_cols=68 Identities=22% Similarity=0.493 Sum_probs=57.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG 112 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 112 (166)
.++|++||+..+.+.+|...|..+|.+..+++......++.+|.||++|.....+.+|+....+..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 47899999999999999999999998887776655567889999999999999999999865544333
No 99
>KOG4849|consensus
Probab=97.73 E-value=5.2e-05 Score=58.62 Aligned_cols=72 Identities=15% Similarity=0.302 Sum_probs=62.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCC--CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFG--PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRN 115 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~ 115 (166)
.-.+|||||-|+++.++|.+.+...| .+.++++..++.+|+++|||.+..-+.....+.++.|-..++-|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 35789999999999999998888777 6677888889999999999999999988889999988877777654
No 100
>KOG1190|consensus
Probab=97.68 E-value=0.00027 Score=55.75 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=71.9
Q ss_pred CCCccccCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHH
Q psy2136 25 PLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104 (166)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~ 104 (166)
++.-.+..+.++....-++..++.+.|+|.++++++++..|.+-|...+.... -++.+.+|++.+.+.+.|..|+.
T Consensus 395 pLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali 470 (492)
T KOG1190|consen 395 PLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALI 470 (492)
T ss_pred chhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhcc
Confidence 33334445555555555666799999999999999999999988865433221 24456799999999999999999
Q ss_pred HhCCCeeC-CeeEEEEeccc
Q psy2136 105 QMNGVMLG-GRNIKVHFPHV 123 (166)
Q Consensus 105 ~l~~~~~~-g~~l~v~~a~~ 123 (166)
.++.+.+. +.-++|.+++.
T Consensus 471 ~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 471 DLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ccccccCCCCceEEEEeecc
Confidence 99998888 45889988754
No 101
>KOG4211|consensus
Probab=97.65 E-value=0.00019 Score=57.67 Aligned_cols=76 Identities=24% Similarity=0.352 Sum_probs=59.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeE-EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKS-INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
...|-+.+||+.+++++|.+||...-.+.. +.++.++ .+++.|-|||+|.+.+.|++|+.. +...|..+-|.|..+
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 467889999999999999999987754433 5566665 467999999999999999999985 555666666666554
No 102
>KOG4307|consensus
Probab=97.62 E-value=0.00027 Score=59.17 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=64.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCee-EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIK-SINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~-~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
+.|-+.|+|++++-++|.+||..|-.+- +|.+.++ ..|...|-+.|.|++.++|..|...|++..|..+.+++..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4777889999999999999999998664 4554444 4689999999999999999999999999999999888754
No 103
>KOG3152|consensus
Probab=97.61 E-value=3.1e-05 Score=57.40 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=60.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCC--------CC----cceEEEEEeCCHHHHHHHHHHhCCCee
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT--------QK----HKGFAFVEYDIPEAAQLSLEQMNGVML 111 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~--------~~----~~g~afv~f~~~~~a~~ai~~l~~~~~ 111 (166)
.-.||++++|+.++...|+++|.+||.|=.|.+-....+ |. .-.-|+|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999999988888765444 22 223578899999999999999999999
Q ss_pred CCee
Q psy2136 112 GGRN 115 (166)
Q Consensus 112 ~g~~ 115 (166)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9865
No 104
>KOG2314|consensus
Probab=97.60 E-value=0.00044 Score=56.63 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=62.9
Q ss_pred CCCCEEEEcCCCCCCCH------HHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-Ce
Q psy2136 42 NSPLRVYVGSISFELKE------DTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG-GR 114 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~------~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~ 114 (166)
.-...|+|-|+|.--.. .-|..+|+++|++....++.+..+| .+||.|++|.+...|+.|++.|+|..+. .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 33468889999864322 2355789999999999999887644 8999999999999999999999999887 67
Q ss_pred eEEEEe
Q psy2136 115 NIKVHF 120 (166)
Q Consensus 115 ~l~v~~ 120 (166)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 777644
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.57 E-value=0.00026 Score=54.67 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=60.7
Q ss_pred CEEEEcCCCCCCCHHH----H--HHhcccCCCeeEEEEeeCCCCCC-cceE--EEEEeCCHHHHHHHHHHhCCCeeCCee
Q psy2136 45 LRVYVGSISFELKEDT----I--RQAFLPFGPIKSINMSWDPITQK-HKGF--AFVEYDIPEAAQLSLEQMNGVMLGGRN 115 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~----l--~~~f~~~g~i~~v~i~~~~~~~~-~~g~--afv~f~~~~~a~~ai~~l~~~~~~g~~ 115 (166)
.-+||-+|++.+..++ | .++|.+||.|..|.+-+...+-. ..+. .|+.|...++|..||...+|..++|+-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4578999988765554 2 36899999998887754321111 1223 499999999999999999999999999
Q ss_pred EEEEecccC
Q psy2136 116 IKVHFPHVQ 124 (166)
Q Consensus 116 l~v~~a~~~ 124 (166)
|+..+...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999887544
No 106
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.53 E-value=0.0011 Score=41.11 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=44.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG 108 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~ 108 (166)
..+..+|+ +|..+...+|.++|..||.|. |.++-+. -|||.+.+.+.+..++..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34566676 999999999999999999874 7777653 799999999999999988764
No 107
>KOG0106|consensus
Probab=97.49 E-value=0.0001 Score=53.93 Aligned_cols=74 Identities=30% Similarity=0.541 Sum_probs=63.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....+.+.|.++...+...+|.+.|..+|.+..... ..+++||+|+...++..|+..|++..+.++.|.+.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 3455688999999999999999999999998844333 35699999999999999999999999999999984
Q ss_pred ec
Q psy2136 120 FP 121 (166)
Q Consensus 120 ~a 121 (166)
..
T Consensus 167 ~~ 168 (216)
T KOG0106|consen 167 KN 168 (216)
T ss_pred cc
Confidence 43
No 108
>KOG0112|consensus
Probab=97.46 E-value=0.00018 Score=61.62 Aligned_cols=84 Identities=27% Similarity=0.509 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eeEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG--RNIK 117 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--~~l~ 117 (166)
.....+.+|+|+|..+.....+...|..||+|..|.+-+. ..|||+.|.+...++.|+..+.|..|++ ++++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 3344589999999999999999999999999999888443 4599999999999999999999999985 7899
Q ss_pred EEecccCCCCCC
Q psy2136 118 VHFPHVQVGRPS 129 (166)
Q Consensus 118 v~~a~~~~~~~~ 129 (166)
|.+++.....+.
T Consensus 525 vdla~~~~~~Pq 536 (975)
T KOG0112|consen 525 VDLASPPGATPQ 536 (975)
T ss_pred cccccCCCCChh
Confidence 999876655443
No 109
>KOG4210|consensus
Probab=97.40 E-value=0.00015 Score=55.66 Aligned_cols=116 Identities=20% Similarity=0.146 Sum_probs=78.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++.|+|++..++.+.+...++..+|......+........++|++++.|...+.+..++.........+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999888999999977666665555567889999999999999999998543345555444433332
Q ss_pred cCCCCCCCCCcccchhhhhhHhhhccCcEE-EcCCCcCCCccccC
Q psy2136 123 VQVGRPSNMPQAQSVIDEITEEAKLYNRIY-VASIHPDLTEEDIK 166 (166)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nl~~~~tee~Lr 166 (166)
....+...... ........++| |++++.++++++|+
T Consensus 167 ~~~~~~~n~~~--------~~~~~~s~~~~~~~~~~f~~~~d~~~ 203 (285)
T KOG4210|consen 167 RRGLRPKNKLS--------RLSSGPSDTIFFVGELDFSLTRDDLK 203 (285)
T ss_pred cccccccchhc--------ccccCccccceeecccccccchHHHh
Confidence 22111111110 11112234566 99999999999874
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.39 E-value=0.00058 Score=38.90 Aligned_cols=52 Identities=21% Similarity=0.433 Sum_probs=41.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHH
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai 103 (166)
+.|-|.+.+.+..+. +..+|.++|.|..+.+. ......|+.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 457788888776644 66689999999998884 23459999999999999885
No 111
>KOG0129|consensus
Probab=97.31 E-value=0.00089 Score=54.27 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=59.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcc-cCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHH
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFL-PFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~-~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 105 (166)
.-++-++||||+||.-++..+|-.+|. .||.+..+-|-.|+.-+..+|-|-|.|.+..+..+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 444558999999999999999999999 999999999988877788999999999999999999875
No 112
>KOG1365|consensus
Probab=97.16 E-value=0.0013 Score=51.72 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=63.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCe-eE--EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KS--INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i-~~--v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
.......|-+.+||+..+.++|.+||..|..- .. |-+..+. .|+..|-|||+|.+.+.|..|..+.+....+.+-|
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 33334578899999999999999999988633 22 5555553 48899999999999999999998888777777778
Q ss_pred EEEec
Q psy2136 117 KVHFP 121 (166)
Q Consensus 117 ~v~~a 121 (166)
.|...
T Consensus 355 Evfp~ 359 (508)
T KOG1365|consen 355 EVFPC 359 (508)
T ss_pred EEeec
Confidence 87554
No 113
>KOG2193|consensus
Probab=97.04 E-value=0.00021 Score=56.67 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=56.3
Q ss_pred EEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeeCCeeEEEEecccC
Q psy2136 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG-VMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 46 ~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~-~~~~g~~l~v~~a~~~ 124 (166)
.+|+|||.+..+.+++...|...----+-.++. ..||+|+...+...|.+|++.++| ..+-|.++.+..+-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 589999999999999999987552111222222 257999999999999999999998 5677888888776444
No 114
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.01 E-value=0.0036 Score=40.48 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=49.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEE-EeeCC------CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-e
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSIN-MSWDP------ITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGR-N 115 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~-i~~~~------~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~-~ 115 (166)
.+-|.|-+.|+. ....+.++|++||.|.+.. +..+. ........-.+.|.+..+|++|+.. ||..+.|. -
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 356777789988 4566889999999997664 10000 0012345899999999999999985 99999874 4
Q ss_pred EEEEec
Q psy2136 116 IKVHFP 121 (166)
Q Consensus 116 l~v~~a 121 (166)
+.|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 455554
No 115
>KOG1365|consensus
Probab=96.96 E-value=0.0025 Score=50.14 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=53.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccC----CCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPF----GPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~----g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
-.|-+.+||+++++.++..||..- |....+.++..+ +|+..|-||+.|...+.|+.|+.+ +.-.++.+-|.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 456678999999999999999622 234456666654 588999999999999999999986 44444433333
No 116
>KOG1548|consensus
Probab=96.91 E-value=0.005 Score=47.81 Aligned_cols=79 Identities=15% Similarity=0.269 Sum_probs=61.5
Q ss_pred CCCCEEEEcCCCC----CCC-------HHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q psy2136 42 NSPLRVYVGSISF----ELK-------EDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVM 110 (166)
Q Consensus 42 ~~~~~v~v~nl~~----~~~-------~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~ 110 (166)
...++|.+.|+=. ..+ .++|..-..+||++.+|.+.- ..+.|.+.|.|.+...|+.||..|+|.-
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3457888888732 223 134566688999999988753 3468899999999999999999999999
Q ss_pred eCCeeEEEEecccC
Q psy2136 111 LGGRNIKVHFPHVQ 124 (166)
Q Consensus 111 ~~g~~l~v~~a~~~ 124 (166)
|.|+.|........
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999998775433
No 117
>KOG1456|consensus
Probab=96.83 E-value=0.012 Score=46.28 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=61.4
Q ss_pred CEEEEcCCC--CCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-C-eeEEEEe
Q psy2136 45 LRVYVGSIS--FELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG-G-RNIKVHF 120 (166)
Q Consensus 45 ~~v~v~nl~--~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g-~~l~v~~ 120 (166)
+.+.+.=|. ..++-+-|.......|++.+|.|++. + .--|.|+|.+.+.|++|...|||..|. | ..|+|++
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 445555444 45788889999999999999998875 2 346999999999999999999999887 4 6899999
Q ss_pred cccCC
Q psy2136 121 PHVQV 125 (166)
Q Consensus 121 a~~~~ 125 (166)
|++..
T Consensus 196 AkP~r 200 (494)
T KOG1456|consen 196 AKPTR 200 (494)
T ss_pred cCcce
Confidence 98654
No 118
>KOG0120|consensus
Probab=96.79 E-value=0.0065 Score=49.83 Aligned_cols=62 Identities=21% Similarity=0.411 Sum_probs=51.9
Q ss_pred HHHHhcccCCCeeEEEEeeCCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 60 TIRQAFLPFGPIKSINMSWDPITQ---KHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 60 ~l~~~f~~~g~i~~v~i~~~~~~~---~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
+++.-+.+||.|.+|.+.++-..+ -..|-.||+|.+.++++.|+.+|.|..|.|+.+...|-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 455668899999999998872222 35678999999999999999999999999999887764
No 119
>KOG1855|consensus
Probab=96.78 E-value=0.002 Score=51.29 Aligned_cols=73 Identities=25% Similarity=0.316 Sum_probs=59.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeC---CCCCC----------cceEEEEEeCCHHHHHHHHH
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWD---PITQK----------HKGFAFVEYDIPEAAQLSLE 104 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~---~~~~~----------~~g~afv~f~~~~~a~~ai~ 104 (166)
...+..+++|.+.|||.+-.-+.|.++|..+|.|..|+|... +.+.+ .+-+|+|+|.....|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 334467899999999999888999999999999999999876 33321 24579999999999999999
Q ss_pred HhCCCe
Q psy2136 105 QMNGVM 110 (166)
Q Consensus 105 ~l~~~~ 110 (166)
.++...
T Consensus 305 ~~~~e~ 310 (484)
T KOG1855|consen 305 LLNPEQ 310 (484)
T ss_pred hhchhh
Confidence 775533
No 120
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.77 E-value=0.009 Score=41.09 Aligned_cols=58 Identities=19% Similarity=0.377 Sum_probs=44.6
Q ss_pred HHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccCCC
Q psy2136 60 TIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVG 126 (166)
Q Consensus 60 ~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~ 126 (166)
+|.+.|..||.+.=+++.-+ --+|.|.+.+.|.+|+. ++|..+.|+.++|....+.+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 57778999998877777543 57999999999999998 799999999999998766554
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.40 E-value=0.027 Score=33.06 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=43.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccC---CCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPF---GPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~---g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l 106 (166)
..|+|.|+.. ++.++|+.+|..| .....|.|+-|. -+-|.|.+...|.+|+..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 5799999854 7778899999988 134578998774 5889999999999998754
No 122
>KOG0112|consensus
Probab=96.34 E-value=0.0013 Score=56.56 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=64.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
......++++|+|||+..+++.+|+..|..+|.+..|.|-..+- +....|+|+.|-+...+..|...+.+..|....++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 34455578999999999999999999999999999988865532 33455999999999999888888888776644444
Q ss_pred EEe
Q psy2136 118 VHF 120 (166)
Q Consensus 118 v~~ 120 (166)
+.+
T Consensus 445 ~gl 447 (975)
T KOG0112|consen 445 IGL 447 (975)
T ss_pred ccc
Confidence 433
No 123
>KOG1996|consensus
Probab=95.85 E-value=0.038 Score=42.25 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=50.8
Q ss_pred HHHHHhcccCCCeeEEEEeeCCCCCC-cceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 59 DTIRQAFLPFGPIKSINMSWDPITQK-HKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 59 ~~l~~~f~~~g~i~~v~i~~~~~~~~-~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
+++.....+||.+.++.|...+.... ..---||+|...+.|.+|+..|||..|+|+.++..+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45677789999998887777653332 2346799999999999999999999999999887664
No 124
>KOG0128|consensus
Probab=95.80 E-value=0.0067 Score=52.10 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
...++|.|.|+..+.+.++.++..+|...+++++..+ .|+++|.||+.|.+...+..+....+...+.-+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3579999999999999999999999999888877765 589999999999999999999888887777766666666443
No 125
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.78 E-value=0.032 Score=39.87 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhccc-CCCe---eEEEEeeCCCC-C-CcceEEEEEeCCHHHHHHHHHHhCCCeeCC---
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLP-FGPI---KSINMSWDPIT-Q-KHKGFAFVEYDIPEAAQLSLEQMNGVMLGG--- 113 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~-~g~i---~~v~i~~~~~~-~-~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--- 113 (166)
....|.|.+||++++++++...+.. ++.. ..+.-.....+ . ..-..||+.|.+.+.+......++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999998887776 5554 22321122111 1 235689999999999999999999987763
Q ss_pred --eeEEEEeccc
Q psy2136 114 --RNIKVHFPHV 123 (166)
Q Consensus 114 --~~l~v~~a~~ 123 (166)
....|++|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3455666543
No 126
>KOG0105|consensus
Probab=95.45 E-value=0.084 Score=37.83 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=54.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG 112 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 112 (166)
+..+|.|.+||++.+=.+|+++..+.|.+....+.++ |.+.|+|...++.+-|+..|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3468999999999999999999999999988888665 48999999999999999999876554
No 127
>KOG2068|consensus
Probab=95.09 E-value=0.011 Score=45.67 Aligned_cols=81 Identities=21% Similarity=0.416 Sum_probs=60.3
Q ss_pred CEEEEcCCCCCCCHHH-HH--HhcccCCCeeEEEEeeCCC--CC-CcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 45 LRVYVGSISFELKEDT-IR--QAFLPFGPIKSINMSWDPI--TQ-KHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~-l~--~~f~~~g~i~~v~i~~~~~--~~-~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
.-+||-+|+.....+. |. .+|.+||.|..|.+..+.. ++ ....-+||.|...++|..||...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4577888887755444 33 4699999999998877652 11 12234899999999999999999999999988777
Q ss_pred EecccCC
Q psy2136 119 HFPHVQV 125 (166)
Q Consensus 119 ~~a~~~~ 125 (166)
.++..+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7765443
No 128
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.05 E-value=0.14 Score=31.09 Aligned_cols=59 Identities=29% Similarity=0.329 Sum_probs=35.2
Q ss_pred CCCCHHHHHHhcccCC-----CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 54 FELKEDTIRQAFLPFG-----PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 54 ~~~~~~~l~~~f~~~g-----~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
..++..+|..++...+ .|-.|.+.. .|+|++... +.|..++..|++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4577888888887664 444566643 389999854 5788999999999999999999864
No 129
>KOG4307|consensus
Probab=95.05 E-value=0.027 Score=47.68 Aligned_cols=81 Identities=19% Similarity=0.157 Sum_probs=62.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeE-EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKS-INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
....+..|||..||..+++.++.++|...-.+.+ |.+...+ +++.++.|||.|....++..|..--+...++.+.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 4445679999999999999999999997766665 7777665 5778899999999988777776543444455677888
Q ss_pred Eec
Q psy2136 119 HFP 121 (166)
Q Consensus 119 ~~a 121 (166)
+..
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 654
No 130
>KOG0115|consensus
Probab=95.00 E-value=0.037 Score=41.43 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=54.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 107 (166)
..|||.||+..++.+.+...|..||++....+..|- .++..+-++|.|...-.|.+|...+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 679999999999999999999999999876666653 47888999999999999999988773
No 131
>KOG2416|consensus
Probab=95.00 E-value=0.03 Score=46.58 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=60.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCC-eeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---Cee
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGP-IKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG---GRN 115 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~---g~~ 115 (166)
....+..|||.||-.-++.-.|+.++..-|. |... ||- +-+..|||.|.+.+.|.+...+|+|+.+. ++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD-----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD-----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHH-----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4445689999999999999999999995554 4444 432 34669999999999999999999998765 467
Q ss_pred EEEEecc
Q psy2136 116 IKVHFPH 122 (166)
Q Consensus 116 l~v~~a~ 122 (166)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 7777764
No 132
>KOG4676|consensus
Probab=94.71 E-value=0.069 Score=42.39 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=58.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT---QKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~---~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
..|.|.||.+.++.++++.+|.-.|.|..+.++..... ....-.|||-|.+...+..|-. |....+-++.|-|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 47899999999999999999999999999988764322 1345689999999888877765 666666666665533
No 133
>KOG2202|consensus
Probab=94.52 E-value=0.018 Score=43.05 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=48.7
Q ss_pred HHHHhcc-cCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 60 TIRQAFL-PFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 60 ~l~~~f~-~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
++...|. +||.|.++.+..+- .-.-.|-+||.|...++|++|+..||+--+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4444555 89999887665432 11347889999999999999999999999999999987753
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.47 E-value=0.37 Score=33.15 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=54.8
Q ss_pred CCCCCCEEEEcCCCCCCCH----HHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q psy2136 40 NSNSPLRVYVGSISFELKE----DTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRN 115 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~----~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~ 115 (166)
.+++-.+|.|.=|..++.. ..+...+..||+|.+|... | +.-|.|.|.+..+|=.|+.+++. ...|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3445568888877666544 3455678899999998763 2 44799999999999999998776 455667
Q ss_pred EEEEecc
Q psy2136 116 IKVHFPH 122 (166)
Q Consensus 116 l~v~~a~ 122 (166)
++..|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 7777643
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.07 E-value=0.19 Score=36.15 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=45.1
Q ss_pred HHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCeeEEEEecccC
Q psy2136 58 EDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN--GVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 58 ~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--~~~~~g~~l~v~~a~~~ 124 (166)
...|+++|..++.+......+. -+-..|.|.+.+.|..+...|+ +..+.|..+++.++...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4678999999999888776543 4468899999999999999999 89999999999887433
No 136
>KOG2135|consensus
Probab=93.90 E-value=0.038 Score=44.77 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=52.6
Q ss_pred CCCCC-CCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 51 SISFE-LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 51 nl~~~-~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
-.+.. -+..+|...|.+||.|..+.+-.. ...|.|.|.....|-.|-. ..+..|+++.|+|.|.++.
T Consensus 379 k~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 379 KSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred ccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 34444 344678899999999999887443 4479999999888866655 5999999999999998763
No 137
>KOG4285|consensus
Probab=93.86 E-value=0.59 Score=36.03 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=45.0
Q ss_pred EEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q psy2136 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGR 114 (166)
Q Consensus 47 v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~ 114 (166)
|-|-++++.-. ..|..+|.++|.|.+.... .+..+-++.|.+..+|++|+.. +|..|.|.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccc
Confidence 33446766533 4578899999998765543 3345999999999999999984 88888763
No 138
>KOG4660|consensus
Probab=93.85 E-value=0.15 Score=42.14 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=46.3
Q ss_pred CCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC----CeeEEEEecccCC
Q psy2136 68 FGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG----GRNIKVHFPHVQV 125 (166)
Q Consensus 68 ~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~----g~~l~v~~a~~~~ 125 (166)
.|....+.++.|..+..+.|||||.|.+..++..+.++++|..+. .+.+.+.||.-+.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 466667888888888889999999999999999999999996543 3566777776443
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.59 E-value=1.3 Score=29.06 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=46.8
Q ss_pred CEEEEcCCCCC-CCHHHHHHhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q psy2136 45 LRVYVGSISFE-LKEDTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG 113 (166)
Q Consensus 45 ~~v~v~nl~~~-~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 113 (166)
..+.+=..|+. +..+.|..+...+- .|..++++++. ..++=.+.+.|.+...|......+||..+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444445555 55555655544443 56678888873 2366689999999999999999999987764
No 140
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=93.21 E-value=0.039 Score=38.09 Aligned_cols=20 Identities=0% Similarity=0.353 Sum_probs=17.9
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++||++|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~ 52 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLR 52 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999985
No 141
>KOG0121|consensus
Probab=92.74 E-value=0.053 Score=36.54 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.1
Q ss_pred HhhhccCcEEEcCCCcCCCcccc
Q psy2136 143 EEAKLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 143 ~~~~~~~~l~V~nl~~~~tee~L 165 (166)
.....+.+||||||+..++||+|
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqi 53 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQI 53 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHH
Confidence 34455789999999999999976
No 142
>KOG2253|consensus
Probab=92.65 E-value=0.082 Score=44.50 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=55.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
.-+|||||+...+..+-+.......|.+.+... ..|||..|..+.....|+..+....++|..+.+..
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr---------~~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR---------DKFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhh---------hhhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 368999999999999988888888887755332 22999999999999999998988888887765543
No 143
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.26 E-value=0.32 Score=30.63 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=41.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCC--eeCCeeEEEEecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 89 AFVEYDIPEAAQLSLEQMNGV--MLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 89 afv~f~~~~~a~~ai~~l~~~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
|.+.|.+...|++.+.. ..+ .+.+..+.|.-............ - ...-+.++|-|.|||..+.||+|+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~q-v--------~~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQ-V--------FSGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEE-E--------EEcccCCEEEEeCCCCCCChhhhe
Confidence 57899999999999873 333 44455665544322211111100 0 011224789999999999999875
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.54 E-value=2.4 Score=25.18 Aligned_cols=55 Identities=7% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 55 ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 55 ~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
.++-++++..+..|+- ..|. .++ . .-||.|.+..+|++|....+|..+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d~-----t-GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DDR-----T-GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ecC-----C-EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3577889999999973 3333 332 2 4589999999999999999999888877664
No 145
>KOG0804|consensus
Probab=90.33 E-value=2.5 Score=34.49 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG 113 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 113 (166)
++.|+|-.+|-.++..||..|...+- .|..++++++.. .++=...+.|++..+|......+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999988664 678899998631 245578899999999999999999987764
No 146
>KOG4574|consensus
Probab=88.02 E-value=0.33 Score=42.28 Aligned_cols=70 Identities=20% Similarity=0.329 Sum_probs=56.3
Q ss_pred EcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC--CeeEEEEecccC
Q psy2136 49 VGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG--GRNIKVHFPHVQ 124 (166)
Q Consensus 49 v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~--g~~l~v~~a~~~ 124 (166)
+.|..-+.+...|..+|.+||.+.+.+..++ ...|.|+|...+.|..|+.+|+|.++. |-+.+|.+|+..
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4444446667778899999999999887665 348999999999999999999997654 778889888744
No 147
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=85.13 E-value=0.38 Score=35.38 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=17.4
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||.++|+++|+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~ 133 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLR 133 (306)
T ss_pred CceEEEeCCCCCCCHHHHH
Confidence 5899999999999999984
No 148
>KOG4410|consensus
Probab=83.80 E-value=3.7 Score=31.64 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=36.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCC-eeEEEEeeCCCCCCcceEEEEEeCCH
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGP-IKSINMSWDPITQKHKGFAFVEYDIP 96 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~~~~~~~~~~g~afv~f~~~ 96 (166)
.-|+++||+.++.-.+|+..+.+.+- ..++.| ..+.|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 56999999999999999999988773 356666 23567899999764
No 149
>KOG2591|consensus
Probab=83.28 E-value=2.4 Score=35.49 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=51.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhccc--CCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeeEEE
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLP--FGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG--VMLGGRNIKV 118 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~--~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~--~~~~g~~l~v 118 (166)
|.|.+.-||.....++++.+|.. .-++.++.+..+. -=||.|.+..+|+.|.+.|.. .+|-|+.|..
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 56778899999999999999975 4467778776653 359999999999999887654 3455655543
No 150
>KOG4483|consensus
Probab=83.00 E-value=4.1 Score=32.85 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=46.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHH
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 105 (166)
.+.|=|.++|.....++|...|+.|+ .--.|.|+-+. ++|..|.....|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 47888999999988888999999996 44668887664 899999999999999873
No 151
>KOG0125|consensus
Probab=82.18 E-value=0.91 Score=35.47 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=17.4
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
-++|||+|||+...|.|||
T Consensus 96 pkRLhVSNIPFrFRdpDL~ 114 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLR 114 (376)
T ss_pred CceeEeecCCccccCccHH
Confidence 4799999999999999986
No 152
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=79.73 E-value=4.1 Score=24.27 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=42.1
Q ss_pred HHHHHhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 59 DTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 59 ~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
++|.+.|...| ++.++.-+..+.++.....-||++....+.. +.++=..+.+..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCCC
Confidence 45677777666 7788888887767778888899886543322 22344456778888887643
No 153
>KOG2318|consensus
Probab=79.43 E-value=11 Score=31.86 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=59.8
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhcccC----CCeeEEEEeeCCCC----------CC---------------------
Q psy2136 41 SNSPLRVYVGSISFE-LKEDTIRQAFLPF----GPIKSINMSWDPIT----------QK--------------------- 84 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~-~~~~~l~~~f~~~----g~i~~v~i~~~~~~----------~~--------------------- 84 (166)
...+++|-|-|+.|. +...+|..+|..| |.|.+|.|...... |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455689999999986 8889988887655 58999988753211 11
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhCCCeeC--CeeEEEEe
Q psy2136 85 ----------------HKGFAFVEYDIPEAAQLSLEQMNGVMLG--GRNIKVHF 120 (166)
Q Consensus 85 ----------------~~g~afv~f~~~~~a~~ai~~l~~~~~~--g~~l~v~~ 120 (166)
.-=||.|+|.+...|......++|..|. +..+-+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1127889999999999999999999887 45555554
No 154
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=77.45 E-value=4.1 Score=24.37 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=42.0
Q ss_pred HHHHHhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 59 DTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 59 ~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
++|.+.|..+| ++.++.-+..+.++....+-+|+......... .|+=..+.++++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 45777788887 77888888887777778888888865432222 234445678888887654
No 155
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=62.33 E-value=16 Score=21.35 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.6
Q ss_pred HHHHHhcccCCCeeEEEEe
Q psy2136 59 DTIRQAFLPFGPIKSINMS 77 (166)
Q Consensus 59 ~~l~~~f~~~g~i~~v~i~ 77 (166)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999876653
No 156
>KOG0113|consensus
Probab=62.27 E-value=3 Score=32.22 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=18.6
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
.+++||||+-|+.+++|..|+
T Consensus 99 DPy~TLFv~RLnydT~EskLr 119 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLR 119 (335)
T ss_pred CccceeeeeeccccccHHHHH
Confidence 457999999999999999875
No 157
>KOG4676|consensus
Probab=59.15 E-value=1.1 Score=35.80 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=50.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG 112 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 112 (166)
++++|++|+..+...++...|..+|.+....+.. +-...++.++|........|+. .+|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6799999999999999999999999887666643 3345577799988888888887 4666655
No 158
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=52.45 E-value=13 Score=28.80 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=32.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCC
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP 80 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~ 80 (166)
.|.+.+.|+..+++--.+...|-+||+|.+|.++.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCC
Confidence 4789999999999988888889999999999998765
No 159
>KOG4019|consensus
Probab=47.11 E-value=18 Score=26.07 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=48.7
Q ss_pred CEEEEcCCCCCCCH-----HHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-eEEE
Q psy2136 45 LRVYVGSISFELKE-----DTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGR-NIKV 118 (166)
Q Consensus 45 ~~v~v~nl~~~~~~-----~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~-~l~v 118 (166)
.++.+.+++..+.. ....++|.+|.+....++.+ +.++--+.|.+...|..|...+++..|.|. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 45666666654222 22445677777665555543 244667789999999999999999999987 6666
Q ss_pred Eecc
Q psy2136 119 HFPH 122 (166)
Q Consensus 119 ~~a~ 122 (166)
-++.
T Consensus 85 yfaQ 88 (193)
T KOG4019|consen 85 YFAQ 88 (193)
T ss_pred EEcc
Confidence 5554
No 160
>KOG0132|consensus
Probab=46.01 E-value=6.8 Score=34.27 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=17.5
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
.+|||||.|+.+++|+||+
T Consensus 421 SrTLwvG~i~k~v~e~dL~ 439 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLA 439 (894)
T ss_pred eeeeeeccccchhhHHHHH
Confidence 6799999999999999984
No 161
>KOG1295|consensus
Probab=45.62 E-value=37 Score=27.29 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=45.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCC-eeEEEEeeCCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGP-IKSINMSWDPITQ--KHKGFAFVEYDIPEAAQLSLEQMNGVMLGG 113 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~~~~~~~--~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 113 (166)
..|.|.+||+..++.++......+-. +....+.....+- ...+.+||.|........-...++|+.|.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 56778899999999887766555421 1112222111111 236789999999998888888888876653
No 162
>KOG0226|consensus
Probab=45.43 E-value=23 Score=26.93 Aligned_cols=108 Identities=11% Similarity=0.166 Sum_probs=59.4
Q ss_pred CEEEEcCCCCCCCHHH-H--HHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 45 LRVYVGSISFELKEDT-I--RQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~-l--~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
...+++++-..+..+. | ...|..|-.+....+..+. -+..++++|+.|........+-..-++..+....++..-+
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 3455666554444333 2 5567766666555555553 2567889999998777666665544555555444444333
Q ss_pred ccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCcccc
Q psy2136 122 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L 165 (166)
..+.- +.... -.....+||-|.|...++++-|
T Consensus 176 tswed-Psl~e-----------w~~~DfRIfcgdlgNevnd~vl 207 (290)
T KOG0226|consen 176 TSWED-PSLAE-----------WDEDDFRIFCGDLGNEVNDDVL 207 (290)
T ss_pred cccCC-ccccc-----------CccccceeecccccccccHHHH
Confidence 22211 10000 1111358888888888877644
No 163
>KOG0116|consensus
Probab=45.32 E-value=10 Score=31.03 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.3
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||.++++.+|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~ 306 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELE 306 (419)
T ss_pred ccceEeecCCCCCCHHHHH
Confidence 5579999999999998873
No 164
>KOG2295|consensus
Probab=45.04 E-value=2.8 Score=35.12 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=52.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG 113 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 113 (166)
...+++|+.|++++++-+.|..++..+.-...+.+.....-.+...++++.|+---....|+.+|++..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 445789999999999999999999988655555543332222345678889986666777777788766553
No 165
>KOG0156|consensus
Probab=42.81 E-value=51 Score=27.59 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=44.2
Q ss_pred EEcCCCCCC---CHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 48 YVGSISFEL---KEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 48 ~v~nl~~~~---~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
+||||+.-. ....+..+=.+||++..+++ |. .-.|...+.+.|+.++.. ++..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l------G~---~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL------GS---VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEe------cC---ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 478887542 44567777779999997777 21 357788899999999986 7888888775
No 166
>KOG2891|consensus
Probab=42.80 E-value=23 Score=27.30 Aligned_cols=66 Identities=20% Similarity=0.406 Sum_probs=40.9
Q ss_pred CEEEEcCCCCC------------CCHHHHHHhcccCCCeeEEEEee-----CCCCCCcceEEEEE--------------e
Q psy2136 45 LRVYVGSISFE------------LKEDTIRQAFLPFGPIKSINMSW-----DPITQKHKGFAFVE--------------Y 93 (166)
Q Consensus 45 ~~v~v~nl~~~------------~~~~~l~~~f~~~g~i~~v~i~~-----~~~~~~~~g~afv~--------------f 93 (166)
-+||+.++|-. .+++-|+..|..||.|..|.|+. ...+|+..|.-|-. |
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57888887742 34567899999999999988764 22345444333332 2
Q ss_pred CCHHHHHHHHHHhCCCe
Q psy2136 94 DIPEAAQLSLEQMNGVM 110 (166)
Q Consensus 94 ~~~~~a~~ai~~l~~~~ 110 (166)
..-.-...|+.+|.|..
T Consensus 230 meykgfa~amdalr~~k 246 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHhHHHHHHHHhcch
Confidence 22233456677777754
No 167
>KOG0533|consensus
Probab=39.21 E-value=12 Score=28.24 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=16.5
Q ss_pred CcEEEcCCCcCCCccccC
Q psy2136 149 NRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 149 ~~l~V~nl~~~~tee~Lr 166 (166)
.+|+|.|||..++++||+
T Consensus 84 ~~v~v~NL~~~V~~~Dl~ 101 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLK 101 (243)
T ss_pred ceeeeecCCcCcchHHHH
Confidence 689999999999999984
No 168
>KOG0151|consensus
Probab=38.61 E-value=15 Score=32.08 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=17.4
Q ss_pred hccCcEEEcCCCcCCCcccc
Q psy2136 146 KLYNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~L 165 (166)
....+|||+||++.++|++|
T Consensus 172 P~TTNlyv~Nlnpsv~E~~l 191 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFL 191 (877)
T ss_pred CcccceeeecCCccccHHHH
Confidence 34689999999999999876
No 169
>KOG0153|consensus
Probab=37.96 E-value=12 Score=29.59 Aligned_cols=19 Identities=21% Similarity=0.662 Sum_probs=17.3
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||++|...++|+|||
T Consensus 228 I~tLyIg~l~d~v~e~dIr 246 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIR 246 (377)
T ss_pred eeEEEecccccchhHHHHH
Confidence 5799999999999999986
No 170
>KOG4454|consensus
Probab=35.96 E-value=10 Score=28.26 Aligned_cols=67 Identities=22% Similarity=0.424 Sum_probs=51.9
Q ss_pred CEEEEcC----CCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q psy2136 45 LRVYVGS----ISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG 112 (166)
Q Consensus 45 ~~v~v~n----l~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 112 (166)
.+++-|+ |....+++.+...|.+.|++..+++..+. .|+++.++|+.+......-.++....++...
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 5666677 67778888888899999999999988875 4788899999887766666777766665443
No 171
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=35.81 E-value=71 Score=21.13 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=26.2
Q ss_pred CHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCH-HHHHHHHH
Q psy2136 57 KEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP-EAAQLSLE 104 (166)
Q Consensus 57 ~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~-~~a~~ai~ 104 (166)
+.+.|.+.|..|.++. +....++ ..+.|++.|.|... .-...|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4578999999998775 5555654 35789999999753 33444443
No 172
>KOG0122|consensus
Probab=32.23 E-value=20 Score=27.05 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=17.4
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|-|.||+.+++|+||+
T Consensus 188 D~~tvRvtNLsed~~E~dL~ 207 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLE 207 (270)
T ss_pred ccceeEEecCccccChhHHH
Confidence 35789999999999999984
No 173
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.05 E-value=87 Score=19.60 Aligned_cols=48 Identities=27% Similarity=0.388 Sum_probs=27.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~ 95 (166)
.-||||+++..+.+.--.......+.- ++.+.... ....||+|-.+.+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~--~neqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSD--NNEQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEcc--CCCCCEEEEEeCC
Confidence 359999999888776333333322222 23333332 2267899887743
No 174
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.09 E-value=31 Score=27.98 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=45.9
Q ss_pred CEEEEcCCCCCCCHH--------HHHHhccc--CCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHH
Q psy2136 45 LRVYVGSISFELKED--------TIRQAFLP--FGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~--------~l~~~f~~--~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~ 104 (166)
+.+|+.++......+ ++...|.. .+++..+...++..+..++|..|++|+....+++...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 567777777654433 78888887 5677777777776566788899999999999999874
No 175
>KOG4849|consensus
Probab=26.77 E-value=22 Score=28.38 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=16.1
Q ss_pred cCcEEEcCCCcCCCcccc
Q psy2136 148 YNRIYVASIHPDLTEEDI 165 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~L 165 (166)
...+|||||-|-+|++||
T Consensus 80 k~~~YvGNL~W~TTD~DL 97 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADL 97 (498)
T ss_pred eEEEEecceeEEeccHHH
Confidence 368999999999999987
No 176
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=26.42 E-value=18 Score=21.46 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHH
Q psy2136 40 NSNSPLRVYVGSISFELKEDT 60 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~ 60 (166)
-...++++|||++|..+-.+.
T Consensus 23 Ls~tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 23 LSLTSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred HHHcCceEEECCCChHHHHcC
Confidence 344568999999998765543
No 177
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.51 E-value=1.1e+02 Score=23.47 Aligned_cols=34 Identities=6% Similarity=0.017 Sum_probs=25.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEee
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSW 78 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~ 78 (166)
....|+|||++++..-+..++...-.+....+|.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 3456899999999999998887665554555554
No 178
>KOG2193|consensus
Probab=22.50 E-value=2.6 Score=34.18 Aligned_cols=74 Identities=16% Similarity=0.344 Sum_probs=57.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEE-EeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSIN-MSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~-i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.+.+-|.|+|+...-+-+..++.+||.+.++. ++.++++ -..-+.|...+.++.++..|+|..+....+++.|.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 46788999999988888999999999887763 3333321 12335677888999999999999999888888764
No 179
>KOG0415|consensus
Probab=22.50 E-value=51 Score=26.48 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.6
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
++.+.|||..|.+-+|+|||.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLe 257 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLE 257 (479)
T ss_pred CCcceEEEEecCCcccccchh
Confidence 457899999999999999983
No 180
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.30 E-value=1.9e+02 Score=17.61 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=21.6
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCCe
Q psy2136 85 HKGFAFVEYDIPEAAQLSLEQMNGVM 110 (166)
Q Consensus 85 ~~g~afv~f~~~~~a~~ai~~l~~~~ 110 (166)
-+||-||+=.+..+...|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 68999999999999999998776643
No 181
>KOG4365|consensus
Probab=20.11 E-value=17 Score=29.92 Aligned_cols=75 Identities=5% Similarity=-0.203 Sum_probs=48.1
Q ss_pred EEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 46 ~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
+-|+..++-..+++++.-+|..||-|.-+...+.-+.+-..-.+|+.... ..++.++..+.-..+.|..+++..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 45667788888999999999999988776665554445555677776633 3445555544444444445555444
No 182
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.04 E-value=1.6e+02 Score=22.71 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=23.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 89 afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
|||.|.+..+|+.+.+.+.... +++.++..|-..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999998554433 344566665433
Done!