Query psy2136
Match_columns 166
No_of_seqs 118 out of 1627
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 16:57:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f25_A Polyadenylate-binding p 99.9 3.6E-25 1.2E-29 146.9 11.0 109 44-164 5-113 (115)
2 4f02_A Polyadenylate-binding p 99.9 1.4E-23 4.8E-28 153.1 13.2 109 42-166 13-121 (213)
3 1b7f_A Protein (SXL-lethal pro 99.9 6.3E-23 2.2E-27 143.5 11.6 106 43-166 2-107 (168)
4 1fxl_A Paraneoplastic encephal 99.9 1E-22 3.5E-27 142.1 12.5 105 44-166 2-106 (167)
5 4fxv_A ELAV-like protein 1; RN 99.9 1.5E-22 5.3E-27 130.8 11.7 82 42-123 17-98 (99)
6 1l3k_A Heterogeneous nuclear r 99.9 1.9E-22 6.6E-27 144.4 11.6 114 40-166 9-122 (196)
7 3tyt_A Heterogeneous nuclear r 99.9 2.6E-22 8.8E-27 145.8 11.4 119 43-166 3-141 (205)
8 2qfj_A FBP-interacting repress 99.9 5.8E-22 2E-26 144.0 11.4 116 44-166 28-143 (216)
9 3md3_A Nuclear and cytoplasmic 99.9 6.7E-22 2.3E-26 137.8 11.3 105 45-166 1-105 (166)
10 2cq0_A Eukaryotic translation 99.9 1.2E-20 4.1E-25 122.5 14.1 90 38-127 9-98 (103)
11 3s8s_A Histone-lysine N-methyl 99.9 5E-21 1.7E-25 126.0 12.4 80 43-122 5-84 (110)
12 3nmr_A Cugbp ELAV-like family 99.9 2.2E-21 7.6E-26 136.4 10.7 107 43-166 2-113 (175)
13 2dgo_A Cytotoxic granule-assoc 99.9 2.4E-20 8.3E-25 123.3 14.4 92 38-129 9-100 (115)
14 2cpz_A CUG triplet repeat RNA- 99.9 2.1E-20 7.1E-25 123.7 13.0 89 39-127 20-108 (115)
15 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-20 4.2E-25 118.7 11.2 82 43-124 5-86 (87)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.3E-20 4.5E-25 122.0 11.6 89 41-129 9-97 (102)
17 3md1_A Nuclear and cytoplasmic 99.8 2.2E-20 7.5E-25 116.5 12.1 80 45-124 2-81 (83)
18 2lxi_A RNA-binding protein 10; 99.8 1.6E-21 5.6E-26 124.1 7.0 83 44-126 1-85 (91)
19 2cjk_A Nuclear polyadenylated 99.8 2.4E-21 8.1E-26 135.5 8.1 104 43-166 2-105 (167)
20 2dnz_A Probable RNA-binding pr 99.8 2.9E-20 1E-24 118.8 12.5 86 42-127 3-88 (95)
21 2do4_A Squamous cell carcinoma 99.8 4.6E-20 1.6E-24 119.1 13.5 86 40-126 13-98 (100)
22 2dgs_A DAZ-associated protein 99.8 3.8E-20 1.3E-24 119.2 13.0 87 41-128 7-93 (99)
23 1x5u_A Splicing factor 3B subu 99.8 2.6E-20 8.9E-25 121.2 12.3 89 39-127 10-98 (105)
24 2la6_A RNA-binding protein FUS 99.8 2.2E-20 7.7E-25 120.4 11.9 84 39-122 8-99 (99)
25 2dnh_A Bruno-like 5, RNA bindi 99.8 5E-20 1.7E-24 119.9 13.6 88 39-127 10-100 (105)
26 1x4h_A RNA-binding protein 28; 99.8 4.1E-20 1.4E-24 121.4 13.1 89 39-127 10-104 (111)
27 2cqc_A Arginine/serine-rich sp 99.8 2.8E-20 9.6E-25 118.9 12.0 86 38-123 9-94 (95)
28 2dnm_A SRP46 splicing factor; 99.8 1.7E-20 6E-25 121.7 11.1 89 39-127 8-96 (103)
29 2cpe_A RNA-binding protein EWS 99.8 3.4E-20 1.2E-24 122.2 12.5 90 38-127 9-106 (113)
30 1whw_A Hypothetical protein ri 99.8 3.3E-20 1.1E-24 119.5 12.2 86 42-127 6-91 (99)
31 2e5h_A Zinc finger CCHC-type a 99.8 4E-20 1.4E-24 118.0 12.3 83 40-122 12-94 (94)
32 2jrs_A RNA-binding protein 39; 99.8 2.7E-20 9.4E-25 122.0 11.7 87 38-124 20-106 (108)
33 2d9p_A Polyadenylate-binding p 99.8 7.8E-20 2.7E-24 118.6 13.6 89 38-128 9-97 (103)
34 2dng_A Eukaryotic translation 99.8 8.6E-20 3E-24 118.4 13.8 87 39-127 10-96 (103)
35 1p27_B RNA-binding protein 8A; 99.8 2.6E-20 8.7E-25 121.5 11.2 86 40-125 19-104 (106)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.2E-20 7.5E-25 117.0 10.4 81 42-122 5-85 (85)
37 2x1f_A MRNA 3'-END-processing 99.8 3E-20 1E-24 119.1 11.2 81 44-124 2-82 (96)
38 2khc_A Testis-specific RNP-typ 99.8 3.8E-20 1.3E-24 122.9 11.9 85 38-122 34-118 (118)
39 2hvz_A Splicing factor, argini 99.8 4.4E-21 1.5E-25 124.1 7.1 100 45-157 1-100 (101)
40 1x5t_A Splicing factor 3B subu 99.8 2.4E-20 8.2E-25 119.5 10.5 86 43-128 4-90 (96)
41 2cph_A RNA binding motif prote 99.8 6.1E-20 2.1E-24 119.8 12.6 89 39-127 10-100 (107)
42 2adc_A Polypyrimidine tract-bi 99.8 2E-20 6.8E-25 137.8 11.3 122 40-166 30-169 (229)
43 3pgw_A U1-A; protein-RNA compl 99.8 3.4E-20 1.2E-24 140.0 12.7 82 41-125 6-91 (282)
44 1wi8_A EIF-4B, eukaryotic tran 99.8 7.8E-20 2.7E-24 118.8 12.7 88 39-128 10-98 (104)
45 1x5s_A Cold-inducible RNA-bind 99.8 3.8E-20 1.3E-24 119.8 11.0 87 41-127 9-95 (102)
46 2dgp_A Bruno-like 4, RNA bindi 99.8 3.8E-20 1.3E-24 120.7 10.9 89 39-127 8-99 (106)
47 1u6f_A Tcubp1, RNA-binding pro 99.8 6E-20 2.1E-24 125.3 12.3 93 38-130 36-128 (139)
48 2lkz_A RNA-binding protein 5; 99.8 1.8E-20 6.1E-25 120.1 9.0 80 44-123 9-94 (95)
49 1oo0_B CG8781-PA, drosophila Y 99.8 4.6E-20 1.6E-24 121.1 11.1 87 40-126 22-108 (110)
50 1fje_B Nucleolin RBD12, protei 99.8 1.7E-21 5.7E-26 137.4 4.3 109 40-166 9-117 (175)
51 2div_A TRNA selenocysteine ass 99.8 5.6E-20 1.9E-24 118.4 10.9 84 42-125 7-95 (99)
52 2cpf_A RNA binding motif prote 99.8 6.2E-20 2.1E-24 118.0 10.9 86 42-127 3-91 (98)
53 3smz_A Protein raver-1, ribonu 99.8 9.7E-20 3.3E-24 137.7 13.6 109 43-166 94-203 (284)
54 2cq3_A RNA-binding protein 9; 99.8 4.3E-19 1.5E-23 115.1 14.6 89 39-129 10-98 (103)
55 3p5t_L Cleavage and polyadenyl 99.8 9E-21 3.1E-25 120.3 6.4 81 45-125 2-84 (90)
56 2do0_A HnRNP M, heterogeneous 99.8 4.2E-19 1.5E-23 117.1 14.6 87 40-127 11-97 (114)
57 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.2E-20 2.1E-24 125.2 10.8 84 38-121 57-140 (140)
58 2fy1_A RNA-binding motif prote 99.8 9.7E-20 3.3E-24 120.8 11.4 85 41-126 4-88 (116)
59 2kxn_B Transformer-2 protein h 99.8 6.1E-20 2.1E-24 124.0 10.5 88 38-125 40-127 (129)
60 2rs2_A Musashi-1, RNA-binding 99.8 7.7E-20 2.6E-24 120.0 10.7 87 40-127 21-107 (109)
61 2cqd_A RNA-binding region cont 99.8 2E-19 6.7E-24 119.2 12.5 87 38-125 11-97 (116)
62 2cqi_A Nucleolysin TIAR; RNA r 99.8 4E-19 1.4E-23 115.2 13.5 87 39-127 10-96 (103)
63 4a8x_A RNA-binding protein wit 99.8 7.8E-20 2.7E-24 115.1 9.8 83 43-125 3-86 (88)
64 3s7r_A Heterogeneous nuclear r 99.8 2E-19 7E-24 113.1 11.5 81 40-121 7-87 (87)
65 3ns6_A Eukaryotic translation 99.8 1.6E-20 5.4E-25 121.5 6.4 80 44-123 6-92 (100)
66 2cqp_A RNA-binding protein 12; 99.8 1.2E-19 4E-24 116.7 10.3 85 40-124 11-95 (98)
67 1h2v_Z 20 kDa nuclear CAP bind 99.8 3E-19 1E-23 124.2 13.1 88 40-127 35-122 (156)
68 3ucg_A Polyadenylate-binding p 99.8 2.1E-19 7.2E-24 113.4 11.2 80 44-124 6-85 (89)
69 2dhg_A TRNA selenocysteine ass 99.8 1.6E-19 5.3E-24 117.3 10.7 86 41-127 6-93 (104)
70 2dh8_A DAZ-associated protein 99.8 2E-19 6.8E-24 117.1 11.1 88 40-128 12-99 (105)
71 2ywk_A Putative RNA-binding pr 99.8 1.9E-19 6.6E-24 115.0 10.8 83 40-123 12-94 (95)
72 1x4b_A Heterogeneous nuclear r 99.8 1.8E-19 6.1E-24 119.4 10.7 86 42-128 25-110 (116)
73 3n9u_C Cleavage and polyadenyl 99.8 1.3E-19 4.4E-24 126.2 10.4 82 43-124 54-137 (156)
74 3ex7_B RNA-binding protein 8A; 99.8 1.8E-19 6E-24 121.0 10.6 88 40-127 18-105 (126)
75 1qm9_A Polypyrimidine tract-bi 99.8 4.1E-20 1.4E-24 132.8 7.8 119 43-166 2-138 (198)
76 3ulh_A THO complex subunit 4; 99.8 3.8E-19 1.3E-23 116.1 11.7 82 40-122 25-106 (107)
77 1x4a_A Splicing factor, argini 99.8 1.1E-18 3.9E-23 114.2 14.0 87 38-127 16-102 (109)
78 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-18 4E-23 113.0 13.9 86 40-127 11-96 (103)
79 2m2b_A RNA-binding protein 10; 99.8 9.5E-20 3.3E-24 123.3 9.0 85 41-126 20-110 (131)
80 2jwn_A Embryonic polyadenylate 99.8 1E-18 3.5E-23 117.0 13.6 82 44-126 36-117 (124)
81 2g4b_A Splicing factor U2AF 65 99.8 1.4E-19 4.7E-24 127.0 9.7 99 43-166 3-112 (172)
82 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.4E-20 2.2E-24 118.6 7.4 84 39-124 14-98 (100)
83 3sde_A Paraspeckle component 1 99.8 1.8E-19 6.3E-24 135.0 10.9 97 40-166 18-114 (261)
84 2dgv_A HnRNP M, heterogeneous 99.8 4.4E-19 1.5E-23 112.7 11.0 83 42-126 6-88 (92)
85 2err_A Ataxin-2-binding protei 99.8 2.8E-19 9.7E-24 117.3 10.3 84 39-124 24-107 (109)
86 1x4e_A RNA binding motif, sing 99.8 5.5E-20 1.9E-24 115.2 6.6 81 42-122 3-83 (85)
87 2kt5_A RNA and export factor-b 99.8 2.2E-18 7.4E-23 115.4 14.8 87 40-127 31-117 (124)
88 2dgx_A KIAA0430 protein; RRM d 99.8 4.7E-19 1.6E-23 113.6 11.0 82 42-126 7-92 (96)
89 2cpi_A CCR4-NOT transcription 99.8 5.9E-19 2E-23 116.1 11.6 88 39-126 10-103 (111)
90 2yh0_A Splicing factor U2AF 65 99.8 1.5E-19 5.2E-24 129.5 9.5 117 43-166 3-132 (198)
91 2kn4_A Immunoglobulin G-bindin 99.8 5.1E-19 1.8E-23 123.1 11.8 87 41-127 67-153 (158)
92 2dgw_A Probable RNA-binding pr 99.8 1.2E-18 4E-23 110.6 12.2 82 41-125 7-88 (91)
93 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.2E-19 2.4E-23 123.4 12.0 88 40-127 68-155 (165)
94 2cq4_A RNA binding motif prote 99.8 2.3E-19 7.8E-24 118.5 8.9 82 42-124 23-104 (114)
95 1p1t_A Cleavage stimulation fa 99.8 2E-19 6.8E-24 116.8 8.5 81 44-124 8-88 (104)
96 2ek1_A RNA-binding protein 12; 99.8 1.9E-19 6.5E-24 115.0 8.2 80 43-122 14-93 (95)
97 1x5o_A RNA binding motif, sing 99.8 2.6E-18 8.9E-23 113.3 14.0 85 39-124 20-112 (114)
98 1s79_A Lupus LA protein; RRM, 99.8 1.7E-19 5.7E-24 117.3 8.0 79 43-123 10-88 (103)
99 2lea_A Serine/arginine-rich sp 99.8 1.6E-19 5.5E-24 122.9 7.8 89 39-127 42-130 (135)
100 2dis_A Unnamed protein product 99.8 5.2E-19 1.8E-23 115.8 10.0 85 43-127 7-95 (109)
101 2fc8_A NCL protein; structure 99.8 2.4E-18 8.2E-23 111.3 12.9 86 39-127 10-95 (102)
102 1sjq_A Polypyrimidine tract-bi 99.8 5E-19 1.7E-23 115.0 9.5 82 42-129 14-97 (105)
103 2ghp_A U4/U6 snRNA-associated 99.8 2.1E-19 7E-24 136.4 9.0 113 42-166 115-229 (292)
104 2mss_A Protein (musashi1); RNA 99.8 1.4E-19 4.9E-24 110.7 6.5 75 46-121 1-75 (75)
105 2ki2_A SS-DNA binding protein 99.8 5.9E-20 2E-24 116.3 4.9 81 45-126 2-82 (90)
106 2cq1_A PTB-like protein L; RRM 99.8 4.7E-18 1.6E-22 110.0 13.6 83 39-127 10-94 (101)
107 2fc9_A NCL protein; structure 99.8 2.8E-18 9.6E-23 110.8 12.6 83 40-126 11-93 (101)
108 2jvo_A Nucleolar protein 3; nu 99.8 9.3E-19 3.2E-23 114.7 10.4 81 39-127 26-106 (108)
109 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.2E-19 7.4E-24 110.4 6.2 76 45-121 1-76 (77)
110 3smz_A Protein raver-1, ribonu 99.8 1.2E-18 4.2E-23 131.6 11.4 93 43-166 21-113 (284)
111 2nlw_A Eukaryotic translation 99.8 1.1E-18 3.7E-23 113.7 9.5 82 41-124 12-100 (105)
112 1wez_A HnRNP H', FTP-3, hetero 99.8 3.5E-18 1.2E-22 110.8 11.5 84 40-126 11-94 (102)
113 1x4d_A Matrin 3; structural ge 99.8 1.5E-18 5.3E-23 112.3 9.7 79 40-124 11-92 (102)
114 2cpy_A RNA-binding protein 12; 99.8 1E-18 3.4E-23 115.5 9.0 82 41-124 12-94 (114)
115 2ghp_A U4/U6 snRNA-associated 99.8 1.4E-18 4.6E-23 131.9 10.8 99 40-166 37-135 (292)
116 1x4c_A Splicing factor, argini 99.8 9.7E-18 3.3E-22 109.7 13.0 80 42-128 13-97 (108)
117 1fj7_A Nucleolin RBD1, protein 99.8 1.3E-19 4.5E-24 117.1 4.0 85 41-127 14-98 (101)
118 1wg5_A Heterogeneous nuclear r 99.8 5.5E-18 1.9E-22 110.2 11.6 83 40-124 11-94 (104)
119 2ytc_A PRE-mRNA-splicing facto 99.8 3.8E-18 1.3E-22 106.8 10.4 77 40-122 8-85 (85)
120 3r27_A HnRNP L, heterogeneous 99.8 3.1E-18 1E-22 110.2 10.1 78 41-124 18-97 (100)
121 1wex_A Hypothetical protein (r 99.8 6.5E-18 2.2E-22 109.9 11.7 81 41-127 12-94 (104)
122 2cpx_A Hypothetical protein FL 99.8 9.1E-19 3.1E-23 115.7 7.6 84 41-128 22-109 (115)
123 2db1_A Heterogeneous nuclear r 99.8 3E-18 1E-22 113.9 10.0 81 41-123 14-97 (118)
124 2ad9_A Polypyrimidine tract-bi 99.8 5.2E-18 1.8E-22 112.6 11.0 83 40-128 27-111 (119)
125 2dnq_A RNA-binding protein 4B; 99.8 8.1E-18 2.8E-22 106.5 11.3 78 42-127 6-83 (90)
126 2cpj_A Non-POU domain-containi 99.8 6.4E-18 2.2E-22 108.8 10.8 80 40-125 11-90 (99)
127 1wel_A RNA-binding protein 12; 99.8 1.4E-18 4.9E-23 116.4 7.7 83 40-123 21-103 (124)
128 3lqv_A PRE-mRNA branch site pr 99.8 5E-18 1.7E-22 112.1 10.2 82 41-125 5-86 (115)
129 2hgl_A HNRPF protein, heteroge 99.8 2.3E-18 7.8E-23 117.2 8.7 82 39-122 39-123 (136)
130 1why_A Hypothetical protein ri 99.8 6.6E-18 2.2E-22 108.3 10.4 80 41-126 14-95 (97)
131 2xnq_A Nuclear polyadenylated 99.8 8.9E-18 3E-22 107.9 11.0 78 39-124 17-95 (97)
132 1x4g_A Nucleolysin TIAR; struc 99.8 8.3E-18 2.8E-22 110.1 11.0 82 40-127 21-102 (109)
133 2a3j_A U1 small nuclear ribonu 99.8 4.1E-18 1.4E-22 114.6 9.7 80 42-124 27-110 (127)
134 2dgt_A RNA-binding protein 30; 99.8 1.6E-17 5.6E-22 105.5 12.0 80 40-127 6-85 (92)
135 1wf1_A RNA-binding protein RAL 99.8 2.1E-17 7.3E-22 108.3 12.9 77 41-125 24-101 (110)
136 1nu4_A U1A RNA binding domain; 99.8 2E-18 6.8E-23 110.6 7.6 82 41-125 5-90 (97)
137 2e5j_A Methenyltetrahydrofolat 99.8 8E-18 2.7E-22 108.0 10.3 81 40-125 15-95 (97)
138 3q2s_C Cleavage and polyadenyl 99.8 2.4E-18 8.3E-23 126.8 8.8 81 43-123 67-149 (229)
139 2la4_A Nuclear and cytoplasmic 99.8 1.4E-18 4.8E-23 112.2 6.7 77 41-123 24-100 (101)
140 2krb_A Eukaryotic translation 99.8 1.2E-18 4.2E-23 108.2 5.9 73 44-118 1-80 (81)
141 2wbr_A GW182, gawky, LD47780P; 99.8 5.3E-18 1.8E-22 105.9 8.6 72 44-121 7-78 (89)
142 1fjc_A Nucleolin RBD2, protein 99.8 3.9E-18 1.3E-22 109.1 8.3 82 41-127 13-94 (96)
143 2dnp_A RNA-binding protein 14; 99.7 1.6E-17 5.3E-22 105.1 10.8 79 41-127 6-84 (90)
144 2cpd_A Apobec-1 stimulating pr 99.7 5E-17 1.7E-21 104.5 13.4 78 41-126 12-91 (99)
145 2lmi_A GRSF-1, G-rich sequence 99.7 1.6E-18 5.5E-23 113.3 6.3 82 40-123 7-91 (107)
146 2jvr_A Nucleolar protein 3; RN 99.7 5.6E-18 1.9E-22 111.4 8.8 80 41-124 25-105 (111)
147 3md3_A Nuclear and cytoplasmic 99.7 3.6E-17 1.2E-21 113.7 13.3 83 40-122 83-165 (166)
148 1iqt_A AUF1, heterogeneous nuc 99.7 9.7E-19 3.3E-23 106.9 4.6 75 46-121 1-75 (75)
149 1x4f_A Matrin 3; structural ge 99.7 1.6E-17 5.5E-22 109.1 10.7 81 39-125 20-103 (112)
150 2lcw_A RNA-binding protein FUS 99.6 9.5E-20 3.2E-24 120.7 0.0 86 42-127 5-98 (116)
151 2xs2_A Deleted in azoospermia- 99.7 3.6E-18 1.2E-22 110.5 6.9 81 43-126 8-88 (102)
152 2dnn_A RNA-binding protein 12; 99.7 1.2E-17 4.2E-22 109.4 9.4 77 43-122 15-91 (109)
153 2dgu_A Heterogeneous nuclear r 99.7 3.9E-17 1.3E-21 105.8 11.3 78 43-128 10-87 (103)
154 2kvi_A Nuclear polyadenylated 99.7 1.1E-17 3.9E-22 107.1 8.7 78 41-126 7-85 (96)
155 1x5p_A Negative elongation fac 99.7 9.3E-17 3.2E-21 102.9 12.8 80 40-127 11-90 (97)
156 2cqh_A IGF-II mRNA-binding pro 99.7 1.4E-17 4.7E-22 106.0 8.7 81 42-129 6-88 (93)
157 2e5g_A U6 snRNA-specific termi 99.7 5.4E-17 1.8E-21 103.5 11.2 79 43-127 7-85 (94)
158 2i2y_A Fusion protein consists 99.7 2E-17 7E-22 114.1 9.9 81 39-124 68-148 (150)
159 2f3j_A RNA and export factor b 99.7 2.3E-17 7.9E-22 117.0 9.6 83 41-124 85-167 (177)
160 2e44_A Insulin-like growth fac 99.7 2.4E-17 8.3E-22 105.4 8.7 80 41-124 12-92 (96)
161 2j8a_A Histone-lysine N-methyl 99.7 2E-17 6.7E-22 110.1 8.2 78 45-122 3-94 (136)
162 3pgw_S U1-70K; protein-RNA com 99.7 5.4E-17 1.9E-21 129.7 12.3 85 41-125 99-183 (437)
163 2g4b_A Splicing factor U2AF 65 99.7 6.8E-17 2.3E-21 113.2 11.4 81 42-122 92-172 (172)
164 2yh0_A Splicing factor U2AF 65 99.7 1.9E-16 6.5E-21 113.3 13.9 86 41-126 111-196 (198)
165 3egn_A RNA-binding protein 40; 99.7 6E-18 2E-22 115.9 5.6 83 41-126 42-132 (143)
166 2qfj_A FBP-interacting repress 99.7 1E-16 3.6E-21 116.1 12.4 85 42-126 123-207 (216)
167 1whx_A Hypothetical protein ri 99.7 7E-17 2.4E-21 106.1 9.7 78 43-126 9-86 (111)
168 1wg1_A KIAA1579 protein, homol 99.7 9E-17 3.1E-21 101.2 9.3 75 43-124 4-78 (88)
169 2hgm_A HNRPF protein, heteroge 99.7 3.3E-17 1.1E-21 109.9 7.3 81 40-123 38-120 (126)
170 1l3k_A Heterogeneous nuclear r 99.7 2.1E-16 7.1E-21 112.9 11.4 85 42-127 102-186 (196)
171 2hgn_A Heterogeneous nuclear r 99.7 1.4E-17 4.6E-22 113.7 4.7 84 40-126 42-125 (139)
172 2dha_A FLJ20171 protein; RRM d 99.7 4.2E-17 1.4E-21 109.1 6.8 79 42-122 21-103 (123)
173 1b7f_A Protein (SXL-lethal pro 99.7 3.8E-16 1.3E-20 108.8 12.0 81 41-121 86-168 (168)
174 3zzy_A Polypyrimidine tract-bi 99.7 7E-16 2.4E-20 103.7 12.5 76 45-125 29-107 (130)
175 2cjk_A Nuclear polyadenylated 99.7 6.9E-17 2.4E-21 112.6 7.5 81 43-124 86-166 (167)
176 1sjr_A Polypyrimidine tract-bi 99.7 4.1E-16 1.4E-20 108.6 11.3 79 43-125 45-125 (164)
177 3d2w_A TAR DNA-binding protein 99.7 3.2E-16 1.1E-20 99.0 9.6 76 41-125 8-85 (89)
178 4f02_A Polyadenylate-binding p 99.7 2.9E-16 9.8E-21 114.2 10.3 79 44-124 103-181 (213)
179 3beg_B Splicing factor, argini 99.7 1.9E-16 6.3E-21 104.7 8.4 77 43-126 15-96 (115)
180 1fxl_A Paraneoplastic encephal 99.7 5.3E-16 1.8E-20 107.8 11.0 80 42-121 86-167 (167)
181 2cq2_A Hypothetical protein LO 99.7 2.7E-16 9.2E-21 103.5 8.8 77 41-123 22-105 (114)
182 2dnl_A Cytoplasmic polyadenyla 99.7 5.6E-16 1.9E-20 102.2 10.1 77 43-122 7-86 (114)
183 2bz2_A Negative elongation fac 99.7 5.6E-16 1.9E-20 103.4 9.7 80 39-126 34-113 (121)
184 2e5i_A Heterogeneous nuclear r 99.7 4.1E-15 1.4E-19 99.3 13.8 75 45-125 26-103 (124)
185 1wf0_A TDP-43, TAR DNA-binding 99.7 2.7E-16 9.2E-21 99.0 7.4 78 43-127 4-81 (88)
186 2diu_A KIAA0430 protein; struc 99.7 6.3E-16 2.2E-20 97.5 8.7 70 46-125 11-85 (96)
187 2hzc_A Splicing factor U2AF 65 99.7 4.2E-16 1.4E-20 97.7 8.0 71 43-120 5-86 (87)
188 2pe8_A Splicing factor 45; RRM 99.6 2.4E-15 8.3E-20 97.8 11.2 81 43-123 7-93 (105)
189 3nmr_A Cugbp ELAV-like family 99.6 1.4E-15 4.7E-20 106.6 10.5 80 42-122 93-175 (175)
190 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-15 6.1E-20 108.7 11.2 80 44-125 109-188 (193)
191 1fje_B Nucleolin RBD12, protei 99.6 2.5E-15 8.5E-20 105.6 10.4 79 41-124 96-174 (175)
192 3u1l_A PRE-mRNA-splicing facto 99.6 1.7E-15 5.9E-20 111.7 8.1 80 41-126 131-231 (240)
193 3pgw_A U1-A; protein-RNA compl 99.6 2.1E-14 7.1E-19 108.3 12.4 77 41-122 204-281 (282)
194 2dit_A HIV TAT specific factor 99.6 8.5E-14 2.9E-18 91.4 12.8 82 40-125 11-103 (112)
195 1qm9_A Polypyrimidine tract-bi 99.5 5.8E-14 2E-18 100.5 10.3 78 42-124 118-197 (198)
196 2adc_A Polypyrimidine tract-bi 99.5 1.1E-13 3.7E-18 101.6 11.2 78 42-124 149-228 (229)
197 3sde_A Paraspeckle component 1 99.5 1.9E-13 6.6E-18 102.2 11.9 82 43-125 95-180 (261)
198 3tyt_A Heterogeneous nuclear r 99.5 4.3E-14 1.5E-18 102.3 7.9 78 42-121 121-204 (205)
199 3v4m_A Splicing factor U2AF 65 99.5 1E-13 3.4E-18 90.1 8.6 80 43-122 4-95 (105)
200 1jmt_A Splicing factor U2AF 35 99.5 1.7E-14 6E-19 93.6 4.0 72 49-121 20-103 (104)
201 3ue2_A Poly(U)-binding-splicin 99.5 3.7E-13 1.3E-17 89.1 9.3 80 43-122 19-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.3E-12 1.1E-16 82.1 9.4 66 54-126 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 3.4E-12 1.1E-16 98.8 9.5 77 40-122 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.3 1.6E-11 5.5E-16 80.8 10.0 76 43-122 6-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.2 1.5E-10 5.2E-15 72.2 8.5 74 44-126 7-88 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 2.1E-10 7.1E-15 75.9 9.1 76 40-121 14-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 2.2E-09 7.5E-14 67.3 6.3 70 44-122 15-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 4.1E-09 1.4E-13 76.7 8.7 66 57-122 142-211 (222)
209 2i2y_A Fusion protein consists 98.7 4.2E-09 1.4E-13 72.1 1.1 81 83-166 10-91 (150)
210 2kn4_A Immunoglobulin G-bindin 98.7 4.2E-08 1.4E-12 67.5 6.1 87 73-166 2-88 (158)
211 2l9w_A U4/U6 snRNA-associated- 98.6 3.9E-07 1.3E-11 58.4 8.8 74 42-121 19-97 (117)
212 2dhx_A Poly (ADP-ribose) polym 98.1 4.6E-05 1.6E-09 48.3 9.9 88 44-162 8-100 (104)
213 1whv_A Poly(A)-specific ribonu 97.9 9.3E-05 3.2E-09 46.4 7.6 60 39-107 11-70 (100)
214 1wey_A Calcipressin 1; structu 97.8 0.00015 5.1E-09 46.1 8.5 75 44-124 5-84 (104)
215 1uw4_A UPF3X; nonsense mediate 97.7 0.00037 1.3E-08 43.4 8.7 69 45-113 2-72 (91)
216 3ctr_A Poly(A)-specific ribonu 97.5 0.00029 1E-08 44.3 5.6 54 45-107 7-60 (101)
217 2lea_A Serine/arginine-rich sp 97.2 4.6E-05 1.6E-09 51.0 -0.3 60 88-166 6-65 (135)
218 1rk8_A CG8781-PA, CG8781-PA pr 97.0 8.1E-05 2.8E-09 51.4 -0.4 76 91-166 11-90 (165)
219 1wwh_A Nucleoporin 35, nucleop 96.9 0.0046 1.6E-07 40.3 7.3 72 41-120 21-93 (119)
220 2l08_A Regulator of nonsense t 96.9 0.006 2E-07 38.2 7.4 69 45-113 10-80 (97)
221 3pgw_S U1-70K; protein-RNA com 96.5 0.00012 4.3E-09 58.3 -3.1 20 147-166 101-120 (437)
222 3pq1_A Poly(A) RNA polymerase; 96.4 0.0022 7.6E-08 51.3 3.4 54 45-104 54-107 (464)
223 4fxv_A ELAV-like protein 1; RN 96.2 0.0013 4.3E-08 41.4 0.9 19 148-166 19-37 (99)
224 3r27_A HnRNP L, heterogeneous 95.9 0.0021 7.3E-08 40.7 0.9 21 146-166 19-39 (100)
225 2ad9_A Polypyrimidine tract-bi 95.8 0.0022 7.6E-08 41.9 0.9 20 147-166 30-49 (119)
226 1x4g_A Nucleolysin TIAR; struc 95.8 0.0062 2.1E-07 38.6 2.9 23 144-166 21-43 (109)
227 2hgn_A Heterogeneous nuclear r 95.7 0.0025 8.5E-08 42.8 0.7 21 146-166 44-64 (139)
228 3s7r_A Heterogeneous nuclear r 95.7 0.0026 8.9E-08 38.6 0.6 20 147-166 10-29 (87)
229 1x4f_A Matrin 3; structural ge 95.5 0.0025 8.6E-08 41.2 0.1 21 146-166 23-44 (112)
230 2dha_A FLJ20171 protein; RRM d 95.5 0.0092 3.1E-07 39.1 2.9 21 146-166 21-41 (123)
231 2la4_A Nuclear and cytoplasmic 95.5 0.0064 2.2E-07 37.9 2.0 20 147-166 26-45 (101)
232 3p3d_A Nucleoporin 53; structu 95.3 0.021 7.2E-07 37.7 4.2 75 45-121 8-96 (132)
233 2cpd_A Apobec-1 stimulating pr 95.3 0.0047 1.6E-07 38.4 1.0 20 147-166 14-33 (99)
234 2jvr_A Nucleolar protein 3; RN 95.3 0.0032 1.1E-07 40.5 0.2 19 148-166 28-46 (111)
235 2cq4_A RNA binding motif prote 95.3 0.0044 1.5E-07 39.6 0.8 20 147-166 24-43 (114)
236 1why_A Hypothetical protein ri 95.3 0.0049 1.7E-07 38.2 1.0 20 147-166 16-35 (97)
237 2ytc_A PRE-mRNA-splicing facto 95.2 0.004 1.4E-07 37.5 0.4 19 148-166 12-30 (85)
238 2hgm_A HNRPF protein, heteroge 95.2 0.0054 1.8E-07 40.4 0.9 20 147-166 41-60 (126)
239 2e5j_A Methenyltetrahydrofolat 95.1 0.0056 1.9E-07 38.0 0.9 19 148-166 19-37 (97)
240 2j76_E EIF-4B, EIF4B, eukaryot 95.1 0.0058 2E-07 38.2 0.9 21 146-166 17-37 (100)
241 1fjc_A Nucleolin RBD2, protein 95.1 0.0047 1.6E-07 38.1 0.5 20 147-166 15-34 (96)
242 2cpx_A Hypothetical protein FL 95.0 0.0058 2E-07 39.0 0.8 20 147-166 24-43 (115)
243 2rs2_A Musashi-1, RNA-binding 95.0 0.0061 2.1E-07 38.8 0.8 21 146-166 23-43 (109)
244 1fj7_A Nucleolin RBD1, protein 95.0 0.0046 1.6E-07 38.6 0.2 19 148-166 17-35 (101)
245 1x4a_A Splicing factor, argini 95.0 0.0066 2.2E-07 38.5 0.9 20 147-166 21-40 (109)
246 2cpj_A Non-POU domain-containi 95.0 0.0067 2.3E-07 37.7 0.9 20 147-166 14-33 (99)
247 2e5h_A Zinc finger CCHC-type a 94.9 0.0067 2.3E-07 37.2 0.9 20 147-166 15-34 (94)
248 2ek1_A RNA-binding protein 12; 94.9 0.0052 1.8E-07 37.8 0.3 19 148-166 15-33 (95)
249 1wel_A RNA-binding protein 12; 94.9 0.0069 2.4E-07 39.4 0.9 20 147-166 24-43 (124)
250 2do4_A Squamous cell carcinoma 94.9 0.0075 2.6E-07 37.5 1.0 19 148-166 17-35 (100)
251 2voo_A Lupus LA protein; RNA-b 94.9 0.025 8.6E-07 39.8 3.8 63 95-166 63-127 (193)
252 2jvo_A Nucleolar protein 3; nu 94.9 0.0067 2.3E-07 38.6 0.7 21 146-166 29-49 (108)
253 3ulh_A THO complex subunit 4; 94.8 0.0047 1.6E-07 38.9 -0.1 21 146-166 27-47 (107)
254 2cpz_A CUG triplet repeat RNA- 94.8 0.0081 2.8E-07 38.4 1.0 20 147-166 24-43 (115)
255 2hgl_A HNRPF protein, heteroge 94.8 0.0062 2.1E-07 40.6 0.4 19 148-166 44-62 (136)
256 2ywk_A Putative RNA-binding pr 94.8 0.0065 2.2E-07 37.3 0.5 20 147-166 15-34 (95)
257 2cqc_A Arginine/serine-rich sp 94.7 0.0072 2.5E-07 37.1 0.6 19 148-166 15-33 (95)
258 2e44_A Insulin-like growth fac 94.7 0.0059 2E-07 37.7 0.1 19 148-166 15-33 (96)
259 2xnq_A Nuclear polyadenylated 94.6 0.0093 3.2E-07 37.1 0.9 21 146-166 20-41 (97)
260 2err_A Ataxin-2-binding protei 94.6 0.0086 2.9E-07 38.1 0.7 20 147-166 28-47 (109)
261 2cqp_A RNA-binding protein 12; 94.6 0.0076 2.6E-07 37.3 0.4 19 148-166 15-33 (98)
262 2jwn_A Embryonic polyadenylate 94.6 0.012 4.1E-07 38.1 1.4 21 146-166 34-54 (124)
263 1x4b_A Heterogeneous nuclear r 94.5 0.0087 3E-07 38.3 0.6 20 147-166 26-45 (116)
264 2a3j_A U1 small nuclear ribonu 94.4 0.011 3.7E-07 38.9 0.9 20 147-166 28-47 (127)
265 1p27_B RNA-binding protein 8A; 94.3 0.0057 1.9E-07 38.5 -0.6 19 148-166 23-41 (106)
266 2khc_A Testis-specific RNP-typ 94.3 0.0088 3E-07 38.4 0.4 20 147-166 39-58 (118)
267 3n9u_C Cleavage and polyadenyl 94.2 0.011 3.9E-07 40.2 0.8 20 147-166 54-73 (156)
268 1x5o_A RNA binding motif, sing 94.2 0.013 4.4E-07 37.3 0.9 20 147-166 24-43 (114)
269 2jrs_A RNA-binding protein 39; 94.2 0.0065 2.2E-07 38.6 -0.5 20 147-166 25-44 (108)
270 3egn_A RNA-binding protein 40; 94.1 0.009 3.1E-07 39.8 0.1 20 147-166 44-63 (143)
271 1oo0_B CG8781-PA, drosophila Y 94.1 0.011 3.9E-07 37.3 0.5 19 148-166 26-44 (110)
272 1wf1_A RNA-binding protein RAL 94.1 0.015 5.2E-07 36.8 1.1 19 148-166 27-46 (110)
273 1u6f_A Tcubp1, RNA-binding pro 93.7 0.018 6E-07 38.0 0.9 21 146-166 40-60 (139)
274 2ku7_A MLL1 PHD3-CYP33 RRM chi 93.7 0.018 6.2E-07 37.9 0.9 20 147-166 62-81 (140)
275 1h2v_Z 20 kDa nuclear CAP bind 93.4 0.02 6.9E-07 38.6 0.8 20 147-166 38-57 (156)
276 2kt5_A RNA and export factor-b 93.4 0.018 6.2E-07 37.3 0.5 21 146-166 33-53 (124)
277 2kxn_B Transformer-2 protein h 93.3 0.015 5.2E-07 38.2 -0.0 20 147-166 45-64 (129)
278 3q2s_C Cleavage and polyadenyl 92.7 0.028 9.7E-07 40.7 0.8 20 147-166 67-86 (229)
279 3d45_A Poly(A)-specific ribonu 92.5 0.54 1.9E-05 38.1 8.0 56 44-108 440-495 (507)
280 2cq2_A Hypothetical protein LO 92.4 0.025 8.7E-07 36.5 0.2 21 146-166 23-45 (114)
281 2f3j_A RNA and export factor b 91.3 0.048 1.6E-06 37.8 0.5 21 146-166 86-106 (177)
282 3zzy_A Polypyrimidine tract-bi 90.1 0.075 2.6E-06 35.1 0.6 20 147-166 27-46 (130)
283 1sjr_A Polypyrimidine tract-bi 89.5 0.091 3.1E-06 36.1 0.7 19 148-166 46-64 (164)
284 2e5i_A Heterogeneous nuclear r 89.1 0.099 3.4E-06 34.2 0.6 20 147-166 24-43 (124)
285 3u1l_A PRE-mRNA-splicing facto 83.4 0.18 6.2E-06 36.8 -0.5 21 146-166 132-161 (240)
286 2g0c_A ATP-dependent RNA helic 78.3 5.1 0.00018 23.1 4.9 67 46-121 2-74 (76)
287 4e8u_A Putative uncharacterize 35.8 99 0.0034 21.1 5.6 38 56-96 33-72 (172)
288 3swz_A Steroid 17-alpha-hydrox 24.5 92 0.0032 24.0 4.5 57 47-113 17-77 (494)
289 3fut_A Dimethyladenosine trans 21.8 77 0.0026 23.1 3.3 33 45-78 111-143 (271)
No 1
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.93 E-value=3.6e-25 Score=146.93 Aligned_cols=109 Identities=24% Similarity=0.466 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
..+|||+|||+++++++|+++|.+||.|.+++++.++ +.++|||||+|.+.++|+.|+..|++..+.|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 45799999999999999999999999999999999999876
Q ss_pred CCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccc
Q psy2136 124 QVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164 (166)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~ 164 (166)
...+.... ........+|||+|||+++|++-
T Consensus 83 ~~~~~~~~----------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAEL----------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC--------------------------------------
T ss_pred cccccccc----------ccccCCCCceEeCCCCCCccccc
Confidence 54322211 11223346899999999999874
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.91 E-value=1.4e-23 Score=153.06 Aligned_cols=109 Identities=22% Similarity=0.452 Sum_probs=95.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.+.++|||||||+++++++|+++|.+||.|.++++++++.+++++|||||+|.+.++|+.|+..+++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 122 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
..... .......+|||+|||+++|+++|+
T Consensus 93 ~~~~~----------------~~~~~~~~l~v~nl~~~~t~~~l~ 121 (213)
T 4f02_A 93 QRDPS----------------LRKSGVGNIFIKNLDKSIDNKALY 121 (213)
T ss_dssp CCCTH----------------HHHHCTTEEEEESCCTTCCHHHHH
T ss_pred ccccc----------------ccccccccceECCcccccHHHHHH
Confidence 53311 122235789999999999999984
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.89 E-value=6.3e-23 Score=143.53 Aligned_cols=106 Identities=19% Similarity=0.376 Sum_probs=96.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
+.++|||+|||.++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.++|+.|+..|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45899999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 123 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
+.... ....+|||+|||.++++++|+
T Consensus 82 ~~~~~------------------~~~~~l~v~nl~~~~t~~~l~ 107 (168)
T 1b7f_A 82 PGGES------------------IKDTNLYVTNLPRTITDDQLD 107 (168)
T ss_dssp CCSST------------------TTTCEEEEESCCTTCCHHHHH
T ss_pred CCccc------------------CCCCCEEEeCCCCCCCHHHHH
Confidence 54321 224799999999999999884
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.89 E-value=1e-22 Score=142.09 Aligned_cols=105 Identities=23% Similarity=0.440 Sum_probs=95.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.++|||+|||+++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.++|+.|+..|+|..+.|+.++|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 124 QVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
... .....+|||+|||.++++++|+
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~ 106 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELE 106 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHH
Confidence 421 1234789999999999999874
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=130.82 Aligned_cols=82 Identities=22% Similarity=0.441 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
-.+++|||+|||.++++++|+++|.+||.|.++.+++++.+|+++|||||+|.+.++|++|+..|+|..+.|+.|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q psy2136 122 HV 123 (166)
Q Consensus 122 ~~ 123 (166)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.88 E-value=1.9e-22 Score=144.44 Aligned_cols=114 Identities=20% Similarity=0.425 Sum_probs=95.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.+...++|||+|||+++++++|+++|.+||.|.++.++.++.+|.++|||||+|.+.++|+.|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445568999999999999999999999999999999999998999999999999999999999985 9999999999999
Q ss_pred ecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 120 FPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 120 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
++......... .......+|||+|||+++|+++|+
T Consensus 88 ~~~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~~~l~ 122 (196)
T 1l3k_A 88 RAVSREDSQRP------------GAHLTVKKIFVGGIKEDTEEHHLR 122 (196)
T ss_dssp ECCC-----------------------CCSEEEEECCTTTCCHHHHH
T ss_pred cccCccccccc------------ccCCCcceEEEeCCCCCCCHHHHH
Confidence 98654322110 112345799999999999999984
No 7
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.88 E-value=2.6e-22 Score=145.78 Aligned_cols=119 Identities=15% Similarity=0.178 Sum_probs=92.6
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 43 SPLRVYVGSIS-FELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 43 ~~~~v~v~nl~-~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
++++|||+||+ ..+++++|+++|.+||.|.+++++.+ .+|||||+|.+.++|+.|+..|+|..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 79999999999999999999999765 3789999999999999999999999999999999998
Q ss_pred ccCCCCCCCC---Ccc--------cchhhh--------hhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 122 HVQVGRPSNM---PQA--------QSVIDE--------ITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 122 ~~~~~~~~~~---~~~--------~~~~~~--------~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
+.....++.. ... .....+ ......+.++|||+|||+++||++|+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~ 141 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF 141 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHH
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHH
Confidence 7554322110 000 000000 00012346789999999999999985
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.87 E-value=5.8e-22 Score=143.98 Aligned_cols=116 Identities=72% Similarity=1.109 Sum_probs=96.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.++|||+|||.++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.+.|+.|+..|++..+.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 47999999999999999999999999999999999988899999999999999999999999999999999999988653
Q ss_pred CCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 124 QVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.. .................+|||+|||.++|+++|+
T Consensus 108 ~~-------~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 143 (216)
T 2qfj_A 108 IG-------QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIK 143 (216)
T ss_dssp CG-------GGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHH
T ss_pred cc-------ccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHH
Confidence 32 1122223333445567899999999999999984
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.7e-22 Score=137.80 Aligned_cols=105 Identities=24% Similarity=0.470 Sum_probs=92.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
++|||+|||.++++++|+++|.+||.|.++.++.++ +++++|||||+|.+.++|+.|+..|+|..+.|+.+.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999986 4779999999999999999999999999999999999998654
Q ss_pred CCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 125 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.... .....+|||+|||+++|+++|+
T Consensus 80 ~~~~----------------~~~~~~l~v~nl~~~~t~~~l~ 105 (166)
T 3md3_A 80 QQSS----------------SDDTFNLFVGDLNVNVDDETLR 105 (166)
T ss_dssp CCCC----------------CTTCEEEEEESCCTTCCHHHHH
T ss_pred CCCC----------------CCCCceEEECCCCCCCCHHHHH
Confidence 3311 1234699999999999999884
No 10
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=122.49 Aligned_cols=90 Identities=22% Similarity=0.399 Sum_probs=83.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.....+.++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34455679999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccCCCC
Q psy2136 118 VHFPHVQVGR 127 (166)
Q Consensus 118 v~~a~~~~~~ 127 (166)
|.++.+...+
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999876544
No 11
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=5e-21 Score=125.97 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
+.++|||+||++++++++|+++|.+||.|.++.++.++.+++++|||||+|.+.++|++|+..|||..+.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999985
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.86 E-value=2.2e-21 Score=136.37 Aligned_cols=107 Identities=21% Similarity=0.368 Sum_probs=92.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeeEE
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQ--KHKGFAFVEYDIPEAAQLSLEQMNGVMLG---GRNIK 117 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~--~~~g~afv~f~~~~~a~~ai~~l~~~~~~---g~~l~ 117 (166)
+.++|||+|||+++++++|+++|.+||.|.++.++.++.++ +++|||||+|.+.++|+.|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35899999999999999999999999999999999998776 89999999999999999999999998776 57788
Q ss_pred EEecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 118 VHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 118 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
+.++...... .....+|||+|||+++|+++|+
T Consensus 82 ~~~~~~~~~~-----------------~~~~~~l~v~nl~~~~t~~~l~ 113 (175)
T 3nmr_A 82 MKPADSEKNN-----------------AVEDRKLFIGMISKKCTENDIR 113 (175)
T ss_dssp EEECGGGCCS-----------------CGGGSEEEEESCCTTCCHHHHH
T ss_pred Eccccccccc-----------------cCCCCeEEEcCCCCcCCHHHHH
Confidence 8776544321 1134799999999999999984
No 13
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=2.4e-20 Score=123.35 Aligned_cols=92 Identities=32% Similarity=0.549 Sum_probs=84.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.....+.++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|+.|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccCCCCCC
Q psy2136 118 VHFPHVQVGRPS 129 (166)
Q Consensus 118 v~~a~~~~~~~~ 129 (166)
|.++.+....+.
T Consensus 89 V~~a~~~~~~~~ 100 (115)
T 2dgo_A 89 TNWATRKPPAPK 100 (115)
T ss_dssp EEESSCCCCCSC
T ss_pred EEEccCCCCCCc
Confidence 999987765443
No 14
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=2.1e-20 Score=123.71 Aligned_cols=89 Identities=27% Similarity=0.474 Sum_probs=82.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
....+.++|||+|||.++++++|+++|.+||.|.++.++.++.+++++|||||+|.+.+.|+.|+..|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34455689999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.++++...+
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999876544
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=118.66 Aligned_cols=82 Identities=35% Similarity=0.569 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
+.++|||+|||.++++++|+++|.+||.|.++.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cC
Q psy2136 123 VQ 124 (166)
Q Consensus 123 ~~ 124 (166)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 54
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=122.03 Aligned_cols=89 Identities=35% Similarity=0.624 Sum_probs=82.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
..+.++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q psy2136 121 PHVQVGRPS 129 (166)
Q Consensus 121 a~~~~~~~~ 129 (166)
+.+...+..
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 987765443
No 17
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=2.2e-20 Score=116.48 Aligned_cols=80 Identities=26% Similarity=0.579 Sum_probs=77.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
.+|||+|||.++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.++|+.|+..|+|..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999765
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=124.08 Aligned_cols=83 Identities=19% Similarity=0.341 Sum_probs=76.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC-CCeeCCeeEEEEec
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN-GVMLGGRNIKVHFP 121 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~-~~~~~g~~l~v~~a 121 (166)
+++|||+|||+++++++|+++|.+|| .|.++++++++.+|+++|||||+|.+.++|++|++.++ +..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred ccCCC
Q psy2136 122 HVQVG 126 (166)
Q Consensus 122 ~~~~~ 126 (166)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 19
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.85 E-value=2.4e-21 Score=135.45 Aligned_cols=104 Identities=21% Similarity=0.540 Sum_probs=91.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
+.++|||+|||.++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.++|+.|+. ++..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35899999999999999999999999999999999998899999999999999999999998 4678999999988864
Q ss_pred cCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 123 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
+. .......+|||+|||+++|+++|+
T Consensus 80 ~~------------------~~~~~~~~l~V~nlp~~~t~~~l~ 105 (167)
T 2cjk_A 80 PR------------------DEQDKTGKIFVGGIGPDVRPKEFE 105 (167)
T ss_dssp CH------------------HHHHHCEEEEEEEECTTCCHHHHH
T ss_pred ch------------------hhccCCCeEEECCCCCCCCHHHHH
Confidence 32 112335699999999999999884
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-20 Score=118.84 Aligned_cols=86 Identities=35% Similarity=0.616 Sum_probs=80.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.+.++|||+|||..+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy2136 122 HVQVGR 127 (166)
Q Consensus 122 ~~~~~~ 127 (166)
.+....
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876544
No 21
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4.6e-20 Score=119.09 Aligned_cols=86 Identities=20% Similarity=0.394 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||.++++++|+++|.+||.|..+.++.++ +|+++|||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy2136 120 FPHVQVG 126 (166)
Q Consensus 120 ~a~~~~~ 126 (166)
++.+...
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9976644
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.8e-20 Score=119.25 Aligned_cols=87 Identities=20% Similarity=0.438 Sum_probs=80.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
....++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.+.|+.|+. |++..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999998 999999999999999
Q ss_pred cccCCCCC
Q psy2136 121 PHVQVGRP 128 (166)
Q Consensus 121 a~~~~~~~ 128 (166)
+.+...+.
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 98765543
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=121.23 Aligned_cols=89 Identities=28% Similarity=0.478 Sum_probs=82.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
......++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456689999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.++.+....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999776543
No 24
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=120.39 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=78.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKS--------INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVM 110 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~ 110 (166)
......++|||+|||.++++++|+++|.+||.|.. +.++.++.+|+++|||||+|.+.++|+.|+..|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34555689999999999999999999999999999 9999999899999999999999999999999999999
Q ss_pred eCCeeEEEEecc
Q psy2136 111 LGGRNIKVHFPH 122 (166)
Q Consensus 111 ~~g~~l~v~~a~ 122 (166)
+.|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 25
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=5e-20 Score=119.88 Aligned_cols=88 Identities=22% Similarity=0.396 Sum_probs=80.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC---ee
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG---RN 115 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g---~~ 115 (166)
......++|||+|||.++++++|+++|.+||.|..+.++.++ +++++|||||+|.+.+.|+.|+..|++..+.| +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344557899999999999999999999999999999999997 78999999999999999999999999999998 99
Q ss_pred EEEEecccCCCC
Q psy2136 116 IKVHFPHVQVGR 127 (166)
Q Consensus 116 l~v~~a~~~~~~ 127 (166)
|+|.++.+...+
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999876554
No 26
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.1e-20 Score=121.42 Aligned_cols=89 Identities=27% Similarity=0.477 Sum_probs=82.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC------CCeeC
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN------GVMLG 112 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~------~~~~~ 112 (166)
......++|||+|||+++++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|+.|+..|+ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344556899999999999999999999999999999999999899999999999999999999999999 99999
Q ss_pred CeeEEEEecccCCCC
Q psy2136 113 GRNIKVHFPHVQVGR 127 (166)
Q Consensus 113 g~~l~v~~a~~~~~~ 127 (166)
|+.|.|.++.+....
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999866443
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=118.85 Aligned_cols=86 Identities=29% Similarity=0.515 Sum_probs=80.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.....+.++|||+|||..+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455568999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEeccc
Q psy2136 118 VHFPHV 123 (166)
Q Consensus 118 v~~a~~ 123 (166)
|.+++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=121.71 Aligned_cols=89 Identities=22% Similarity=0.462 Sum_probs=82.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
....+.++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34455689999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.+++.....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999866443
No 29
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=122.25 Aligned_cols=90 Identities=24% Similarity=0.326 Sum_probs=82.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCee--------EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIK--------SINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGV 109 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~--------~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~ 109 (166)
.......++|||+|||.++++++|+++|.+||.|. .+.++.++.+++++|||||+|.+.++|+.|+..|++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34556679999999999999999999999999998 6999999889999999999999999999999999999
Q ss_pred eeCCeeEEEEecccCCCC
Q psy2136 110 MLGGRNIKVHFPHVQVGR 127 (166)
Q Consensus 110 ~~~g~~l~v~~a~~~~~~ 127 (166)
.+.|+.|+|.++++....
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999876544
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.3e-20 Score=119.49 Aligned_cols=86 Identities=27% Similarity=0.551 Sum_probs=80.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.+.++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy2136 122 HVQVGR 127 (166)
Q Consensus 122 ~~~~~~ 127 (166)
.+....
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 876554
No 31
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4e-20 Score=117.99 Aligned_cols=83 Identities=28% Similarity=0.388 Sum_probs=78.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||..+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44456899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecc
Q psy2136 120 FPH 122 (166)
Q Consensus 120 ~a~ 122 (166)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 32
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=122.00 Aligned_cols=87 Identities=40% Similarity=0.710 Sum_probs=80.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.....+.++|||+|||..+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.+.|+.|+..|+|..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33445568999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccC
Q psy2136 118 VHFPHVQ 124 (166)
Q Consensus 118 v~~a~~~ 124 (166)
|.+++++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998765
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=7.8e-20 Score=118.61 Aligned_cols=89 Identities=26% Similarity=0.519 Sum_probs=81.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.....+.++|||+|||+++++++|+++|.+||.|..+.++.+ +++++|||||+|.+.+.|+.|+..|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345556789999999999999999999999999999999988 789999999999999999999999999999999999
Q ss_pred EEecccCCCCC
Q psy2136 118 VHFPHVQVGRP 128 (166)
Q Consensus 118 v~~a~~~~~~~ 128 (166)
|.++.++..+.
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2d9p_A 87 VALAQRKEERQ 97 (103)
T ss_dssp EEECSSCCCCC
T ss_pred EEEecccccCC
Confidence 99998765543
No 34
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=8.6e-20 Score=118.44 Aligned_cols=87 Identities=28% Similarity=0.550 Sum_probs=79.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
....+.++|||+|||.++++++|+++|.+|| |.++.++.++.+++++|||||+|.+.+.|+.|+ .|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445568999999999999999999999997 999999999989999999999999999999999 89999999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.++.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876544
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=121.47 Aligned_cols=86 Identities=31% Similarity=0.463 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...++++|||+|||..+++++|+.+|.+||.|.++.++.++.+|+++|||||+|.+.++|+.|+..|+|..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q psy2136 120 FPHVQV 125 (166)
Q Consensus 120 ~a~~~~ 125 (166)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997653
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=2.2e-20 Score=116.99 Aligned_cols=81 Identities=37% Similarity=0.701 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.+.++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|+|..+.|+.|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred c
Q psy2136 122 H 122 (166)
Q Consensus 122 ~ 122 (166)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=3e-20 Score=119.13 Aligned_cols=81 Identities=31% Similarity=0.586 Sum_probs=77.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
+++|||+|||.++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.++|+.|+..|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred C
Q psy2136 124 Q 124 (166)
Q Consensus 124 ~ 124 (166)
.
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 38
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=3.8e-20 Score=122.94 Aligned_cols=85 Identities=27% Similarity=0.549 Sum_probs=78.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.....+.++|||+|||.++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.++|+.|++.|+|..+.|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecc
Q psy2136 118 VHFPH 122 (166)
Q Consensus 118 v~~a~ 122 (166)
|++++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99874
No 39
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-21 Score=124.12 Aligned_cols=100 Identities=22% Similarity=0.483 Sum_probs=84.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
++|||+|||.++++++|+++|.+||.|.++.++.+ ++|||||+|.+.++|+.|+..|++..+.|+.|+|.++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6889999999999999999999999999999999999877
Q ss_pred CCCCCCCCcccchhhhhhHhhhccCcEEEcCCC
Q psy2136 125 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIH 157 (166)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 157 (166)
..+......... .....+||||||+
T Consensus 76 ~~~~~~~~~~~~--------~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPAR--------RKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCS--------CCCCSCCCSCCCC
T ss_pred CCcccCCCCCcc--------ccCCCceecCCCC
Confidence 644333222211 1235799999996
No 40
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=119.45 Aligned_cols=86 Identities=27% Similarity=0.499 Sum_probs=80.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEE-EEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSI-NMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v-~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
+.++|||+|||.++++++|+++|.+||.|..+ .++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy2136 122 HVQVGRP 128 (166)
Q Consensus 122 ~~~~~~~ 128 (166)
.+...+.
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8765543
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6.1e-20 Score=119.81 Aligned_cols=89 Identities=22% Similarity=0.465 Sum_probs=81.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeC-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeeE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWD-PITQKHKGFAFVEYDIPEAAQLSLEQM-NGVMLGGRNI 116 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~-~~~~~~~g~afv~f~~~~~a~~ai~~l-~~~~~~g~~l 116 (166)
......++|||+|||.++++++|+++|.+||.|..+.++.+ +.+++++|||||+|.+.++|+.|+..| ++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34455689999999999999999999999999999999998 778999999999999999999999999 9999999999
Q ss_pred EEEecccCCCC
Q psy2136 117 KVHFPHVQVGR 127 (166)
Q Consensus 117 ~v~~a~~~~~~ 127 (166)
+|.++.+....
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 42
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.84 E-value=2e-20 Score=137.76 Aligned_cols=122 Identities=18% Similarity=0.273 Sum_probs=94.4
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 40 NSNSPLRVYVGSISF-ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
...+.++|||+|||. ++++++|+++|.+||.|.++.++.++ +|||||+|.+.+.|+.|+..|+|..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345568999999999 99999999999999999999998764 789999999999999999999999999999999
Q ss_pred EecccCCCCCCCCCc-----------------ccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 119 HFPHVQVGRPSNMPQ-----------------AQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 119 ~~a~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.++............ .............+..+|||+|||+++++++|+
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 998755321111000 000000011112346899999999999999884
No 43
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.84 E-value=3.4e-20 Score=140.04 Aligned_cols=82 Identities=22% Similarity=0.433 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIR----QAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
..+.++|||+|||.++++++|+ ++|.+||.|.++.++. +++++|||||+|.+.++|+.|+..|+|..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3456899999999999999966 8999999999998875 57899999999999999999999999999999999
Q ss_pred EEEecccCC
Q psy2136 117 KVHFPHVQV 125 (166)
Q Consensus 117 ~v~~a~~~~ 125 (166)
+|.+++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999986544
No 44
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.8e-20 Score=118.84 Aligned_cols=88 Identities=19% Similarity=0.520 Sum_probs=80.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT-QKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~-~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
....+.++|||+|||..+++++|+++|.+|| |..+.++.++.+ ++++|||||+|.+.+.|+.|+ .|++..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3445568999999999999999999999999 999999999887 899999999999999999999 8999999999999
Q ss_pred EEecccCCCCC
Q psy2136 118 VHFPHVQVGRP 128 (166)
Q Consensus 118 v~~a~~~~~~~ 128 (166)
|.++.+...+.
T Consensus 88 V~~a~~~~~~~ 98 (104)
T 1wi8_A 88 VDVADQAQDKD 98 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 99998765543
No 45
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-20 Score=119.82 Aligned_cols=87 Identities=28% Similarity=0.516 Sum_probs=80.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
..+.++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy2136 121 PHVQVGR 127 (166)
Q Consensus 121 a~~~~~~ 127 (166)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 46
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.8e-20 Score=120.65 Aligned_cols=89 Identities=24% Similarity=0.371 Sum_probs=81.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee---CCee
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML---GGRN 115 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~---~g~~ 115 (166)
....+.++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.+.|+.|+..|++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3445568999999999999999999999999999999999998999999999999999999999999999887 8899
Q ss_pred EEEEecccCCCC
Q psy2136 116 IKVHFPHVQVGR 127 (166)
Q Consensus 116 l~v~~a~~~~~~ 127 (166)
|+|.++.+...+
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999876544
No 47
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=6e-20 Score=125.31 Aligned_cols=93 Identities=25% Similarity=0.438 Sum_probs=84.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.......++|||+|||.++++++|+++|..||.|.++.++.++.+++++|||||+|.+.++|++|+..|++..+.|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34555678999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEecccCCCCCCC
Q psy2136 118 VHFPHVQVGRPSN 130 (166)
Q Consensus 118 v~~a~~~~~~~~~ 130 (166)
|.++++...++..
T Consensus 116 v~~a~~~~~~~~~ 128 (139)
T 1u6f_A 116 VALAASGHQRPGI 128 (139)
T ss_dssp EEESSCCCCCCCS
T ss_pred EEECCCCCCCCCC
Confidence 9999877655443
No 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=120.14 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=74.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCC--eeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeCCeeEE
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGP--IKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGV----MLGGRNIK 117 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~--i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~----~~~g~~l~ 117 (166)
-.+|||+|||+++++++|+++|.+||. +.++++++++.+|+++|||||+|.+.++|++|++.|++. .+.|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 368999999999999999999999995 578999999999999999999999999999999999986 58899999
Q ss_pred EEeccc
Q psy2136 118 VHFPHV 123 (166)
Q Consensus 118 v~~a~~ 123 (166)
|.||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999863
No 49
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=4.6e-20 Score=121.06 Aligned_cols=87 Identities=33% Similarity=0.479 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||..+++++|+.+|.+||.|.++.++.++.+|+++|||||+|.+.+.|+.|+..|+|..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy2136 120 FPHVQVG 126 (166)
Q Consensus 120 ~a~~~~~ 126 (166)
++.+...
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9976643
No 50
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=1.7e-21 Score=137.40 Aligned_cols=109 Identities=17% Similarity=0.356 Sum_probs=90.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||.++++++|+++|.+||.+.. .++.+..+|+++|||||+|.+.++|+.|++ |+|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4455689999999999999999999999987655 233344567889999999999999999995 99999999999999
Q ss_pred ecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 120 FPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 120 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
++...... ......+|||+|||.++|+++|+
T Consensus 87 ~~~~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~ 117 (175)
T 1fje_B 87 KPKGRDSK----------------KVRAARTLLAKNLSFNITEDELK 117 (175)
T ss_dssp CCCCSSCS----------------TTGGGGEEEEESCCSSCCHHHHH
T ss_pred cCCCcccc----------------ccccCCEEEEeCCCCCCCHHHHH
Confidence 98755321 11235799999999999999984
No 51
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-20 Score=118.41 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCee-EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCee----E
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIK-SINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRN----I 116 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~-~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~----l 116 (166)
...++|||+|||.++++++|+++|.+||.|. ++.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4468999999999999999999999999999 9999999989999999999999999999999999999999999 9
Q ss_pred EEEecccCC
Q psy2136 117 KVHFPHVQV 125 (166)
Q Consensus 117 ~v~~a~~~~ 125 (166)
+|.|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999987653
No 52
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.2e-20 Score=118.01 Aligned_cols=86 Identities=28% Similarity=0.485 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCC---CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPI---TQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
.+.++|||+|||.++++++|+++|.+||.|..+.++.++. +++++|||||+|.+.+.|+.|+..|++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3458999999999999999999999999999999998875 5689999999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.++.+....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876544
No 53
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.83 E-value=9.7e-20 Score=137.70 Aligned_cols=109 Identities=19% Similarity=0.337 Sum_probs=96.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++|||+|||..+++++|+++|..||.|..+.++.++.+|.++|||||+|.+.+.|..|+..|+|..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCC-CccccC
Q psy2136 123 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDL-TEEDIK 166 (166)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~-tee~Lr 166 (166)
+...... .....+|||+|||+++ |+++|+
T Consensus 174 ~~~~~~~---------------~~~~~~l~v~nlp~~~~~~~~l~ 203 (284)
T 3smz_A 174 AGQLTPA---------------LLHSRCLCVDRLPPGFNDVDALC 203 (284)
T ss_dssp GGGCCTT---------------TTSCSEEEEECCCTTCCCHHHHH
T ss_pred CCCCCcc---------------cCCccEEEEecCCcccCCHHHHH
Confidence 6533211 1235799999999995 888874
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-19 Score=115.09 Aligned_cols=89 Identities=28% Similarity=0.527 Sum_probs=79.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
......++|||+|||.++++++|+++|.+||.|..+.++.++. .++|||||+|.+.++|+.|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445568999999999999999999999999999999998863 38999999999999999999999999999999999
Q ss_pred EecccCCCCCC
Q psy2136 119 HFPHVQVGRPS 129 (166)
Q Consensus 119 ~~a~~~~~~~~ 129 (166)
.++.+......
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cq3_A 88 NNATARVMTNS 98 (103)
T ss_dssp EECCSSCCCCC
T ss_pred EEcccCCCCCC
Confidence 99987765443
No 55
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=9e-21 Score=120.28 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=72.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCC--CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFG--PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
.+|||+|||.++++++|+++|.+|| .|.++.++.++.+|+++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q psy2136 123 VQV 125 (166)
Q Consensus 123 ~~~ 125 (166)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 56
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-19 Score=117.09 Aligned_cols=87 Identities=16% Similarity=0.287 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||.++++++|+++|.+||.|.++.++.++ +++++|||||+|.+.+.|+.|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34456899999999999999999999999999999999987 58999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy2136 120 FPHVQVGR 127 (166)
Q Consensus 120 ~a~~~~~~ 127 (166)
++.....+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 98755443
No 57
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=125.15 Aligned_cols=84 Identities=36% Similarity=0.669 Sum_probs=78.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.....+.++|||+|||..+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|+..|++..+.|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34555678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEec
Q psy2136 118 VHFP 121 (166)
Q Consensus 118 v~~a 121 (166)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9885
No 58
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=9.7e-20 Score=120.84 Aligned_cols=85 Identities=29% Similarity=0.527 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
....++|||+|||.++++++|+++|.+||.|.++.++.++ +|+++|||||+|.+.++|+.|+..|+|..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy2136 121 PHVQVG 126 (166)
Q Consensus 121 a~~~~~ 126 (166)
+++...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986653
No 59
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=6.1e-20 Score=124.01 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=81.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.....+.++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEecccCC
Q psy2136 118 VHFPHVQV 125 (166)
Q Consensus 118 v~~a~~~~ 125 (166)
|.++.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99987653
No 60
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=7.7e-20 Score=120.03 Aligned_cols=87 Identities=22% Similarity=0.423 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||.++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.+.|+.|+..+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4445689999999999999999999999999999999999989999999999999999999999975 589999999999
Q ss_pred ecccCCCC
Q psy2136 120 FPHVQVGR 127 (166)
Q Consensus 120 ~a~~~~~~ 127 (166)
++.+...+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99766443
No 61
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=119.16 Aligned_cols=87 Identities=22% Similarity=0.408 Sum_probs=80.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.......++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.+.|++|+..+++ .+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34455668999999999999999999999999999999999998999999999999999999999999998 89999999
Q ss_pred EEecccCC
Q psy2136 118 VHFPHVQV 125 (166)
Q Consensus 118 v~~a~~~~ 125 (166)
|.++....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997653
No 62
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-19 Score=115.24 Aligned_cols=87 Identities=29% Similarity=0.459 Sum_probs=78.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
......++|||+|||..+++++|+++|.+||.|.++.++.++. .++|||||+|.+.+.|+.|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3445568999999999999999999999999999999999864 36899999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.++.+...+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999876543
No 63
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=7.8e-20 Score=115.12 Aligned_cols=83 Identities=28% Similarity=0.551 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCC-cceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK-HKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~-~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.+++|||+|||.++++++|+++|.+||.|.++.++.++.++. ++|||||+|.+.++|+.|+..|+|..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458999999999999999999999999999999999877665 8999999999999999999999999999999999998
Q ss_pred ccCC
Q psy2136 122 HVQV 125 (166)
Q Consensus 122 ~~~~ 125 (166)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6553
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=2e-19 Score=113.11 Aligned_cols=81 Identities=22% Similarity=0.467 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||+++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.+.|++|+. +++..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 44556899999999999999999999999999999999999899999999999999999999997 58889999999998
Q ss_pred ec
Q psy2136 120 FP 121 (166)
Q Consensus 120 ~a 121 (166)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 65
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.6e-20 Score=121.49 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=76.8
Q ss_pred CCEEEEcCCCC------CCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-eeE
Q psy2136 44 PLRVYVGSISF------ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG-RNI 116 (166)
Q Consensus 44 ~~~v~v~nl~~------~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g-~~l 116 (166)
+++|||+|||. ++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.+.|++|+..|+|..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57999999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEeccc
Q psy2136 117 KVHFPHV 123 (166)
Q Consensus 117 ~v~~a~~ 123 (166)
+|.++.+
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9999864
No 66
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=116.70 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||.++++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 33445899999999999999999999999999888888888889999999999999999999999999999999999999
Q ss_pred ecccC
Q psy2136 120 FPHVQ 124 (166)
Q Consensus 120 ~a~~~ 124 (166)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98643
No 67
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=3e-19 Score=124.15 Aligned_cols=88 Identities=30% Similarity=0.409 Sum_probs=81.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||.++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|+.|+..|++..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy2136 120 FPHVQVGR 127 (166)
Q Consensus 120 ~a~~~~~~ 127 (166)
|+.+....
T Consensus 115 ~a~~~~~~ 122 (156)
T 1h2v_Z 115 WDAGFKEG 122 (156)
T ss_dssp EESCCCTT
T ss_pred ECCCCCCc
Confidence 99866543
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=2.1e-19 Score=113.40 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=76.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.++|||+|||.++++++|+++|.+||.|.++.++.++.+++++|||||+|.+.++|+.|+ .|++..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999889999999999999999999999 8999999999999999865
Q ss_pred C
Q psy2136 124 Q 124 (166)
Q Consensus 124 ~ 124 (166)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=117.34 Aligned_cols=86 Identities=17% Similarity=0.406 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhccc-CCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-eCCeeEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLP-FGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVM-LGGRNIKV 118 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~-~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~-~~g~~l~v 118 (166)
..+.++|||+|||.++++++|+++|.+ ||.|.++.++.++ +|+++|||||+|.+.+.|+.|+..|++.. +.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345689999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.++.+...+
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999766543
No 70
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=117.07 Aligned_cols=88 Identities=23% Similarity=0.414 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||+.+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.+.|+.|+.. ++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 445568999999999999999999999999999999999998999999999999999999999998 9999999999999
Q ss_pred ecccCCCCC
Q psy2136 120 FPHVQVGRP 128 (166)
Q Consensus 120 ~a~~~~~~~ 128 (166)
++.++...+
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998765443
No 71
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=114.97 Aligned_cols=83 Identities=29% Similarity=0.537 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||..+++++|+++|.+||.|.++.++.++. ++++|||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344568999999999999999999999999999999999975 8899999999999999999999999999999999999
Q ss_pred eccc
Q psy2136 120 FPHV 123 (166)
Q Consensus 120 ~a~~ 123 (166)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9853
No 72
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=119.35 Aligned_cols=86 Identities=17% Similarity=0.408 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
...++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.+.|+.|+.. ++..+.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3458999999999999999999999999999999999998999999999999999999999997 999999999999999
Q ss_pred ccCCCCC
Q psy2136 122 HVQVGRP 128 (166)
Q Consensus 122 ~~~~~~~ 128 (166)
.+.....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8775543
No 73
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=126.23 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCC--CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFG--PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
..++|||+|||+++++++|+++|.+|| .|.++.++.++.+|+++|||||+|.+.++|+.|+..|+|..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q psy2136 121 PHVQ 124 (166)
Q Consensus 121 a~~~ 124 (166)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8643
No 74
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=1.8e-19 Score=121.02 Aligned_cols=88 Identities=31% Similarity=0.443 Sum_probs=81.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||..+++++|+.+|.+||.|..+.++.++.+++++|||||+|.+.+.|+.|+..|++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy2136 120 FPHVQVGR 127 (166)
Q Consensus 120 ~a~~~~~~ 127 (166)
++.+....
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99866543
No 75
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.81 E-value=4.1e-20 Score=132.84 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=92.0
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 43 SPLRVYVGSISF-ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 43 ~~~~v~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
++++|||+|||+ .+++++|+++|.+||.|.++.++.++ +|||||+|.+.+.|+.|+..|+|..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998764 789999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCccc-----------------chhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 122 HVQVGRPSNMPQAQ-----------------SVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 122 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.............. ...........+..+|||+|||.++++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 138 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 138 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHH
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHH
Confidence 75532111100000 0000000112346899999999999999884
No 76
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=3.8e-19 Score=116.06 Aligned_cols=82 Identities=23% Similarity=0.445 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||..+++++|+++|.+||.|.++.++.++ +|+++|||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34556899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecc
Q psy2136 120 FPH 122 (166)
Q Consensus 120 ~a~ 122 (166)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 77
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-18 Score=114.25 Aligned_cols=87 Identities=26% Similarity=0.529 Sum_probs=77.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 38 ~~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.......++|||+|||.++++++|+++|.+||.|..+.+..+ ++++|||||+|.+.++|+.|+..|++..+.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344556689999999999999999999999999999998654 56799999999999999999999999999999999
Q ss_pred EEecccCCCC
Q psy2136 118 VHFPHVQVGR 127 (166)
Q Consensus 118 v~~a~~~~~~ 127 (166)
|.++++....
T Consensus 93 V~~a~~~~~~ 102 (109)
T 1x4a_A 93 VEFPRSGRGT 102 (109)
T ss_dssp EECCCCCCCC
T ss_pred EEEcccCCCC
Confidence 9999876544
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-18 Score=113.01 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||..+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.+.|+.|+. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34456899999999999999999999999999999999999899999999999999999999998 5789999999999
Q ss_pred ecccCCCC
Q psy2136 120 FPHVQVGR 127 (166)
Q Consensus 120 ~a~~~~~~ 127 (166)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99776443
No 79
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=9.5e-20 Score=123.30 Aligned_cols=85 Identities=22% Similarity=0.362 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeE--EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeCCe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKS--INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGV----MLGGR 114 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~--v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~----~~~g~ 114 (166)
....++|||+|||+++++++|+++|.+||.|.. +++++++.+|+++|||||+|.+. +|..|+..|+|. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999966 99999999999999999999999 999999999999 99999
Q ss_pred eEEEEecccCCC
Q psy2136 115 NIKVHFPHVQVG 126 (166)
Q Consensus 115 ~l~v~~a~~~~~ 126 (166)
.|+|.++++...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 80
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1e-18 Score=116.97 Aligned_cols=82 Identities=23% Similarity=0.463 Sum_probs=77.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.++|||+|||.++++++|+++|.+||.|.++.++.++.+|.++|||||+|.+.+.|+.|+ .|+|..+.|+.|+|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999889999999999999999999999 7999999999999999875
Q ss_pred CCC
Q psy2136 124 QVG 126 (166)
Q Consensus 124 ~~~ 126 (166)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 81
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.81 E-value=1.4e-19 Score=126.98 Aligned_cols=99 Identities=23% Similarity=0.554 Sum_probs=85.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccC----C-------CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPF----G-------PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML 111 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~----g-------~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 111 (166)
+.++|||+|||.++++++|+++|.+| | .+.++.+. +++|||||+|.+.++|+.|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35899999999999999999999999 6 67777663 45789999999999999999 8999999
Q ss_pred CCeeEEEEecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 112 GGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 112 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.|+.+.|.++...... ....+|||+|||+++|+++|+
T Consensus 76 ~g~~i~v~~~~~~~~~------------------~~~~~l~v~nlp~~~t~~~l~ 112 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL------------------PGAHKLFIGGLPNYLNDDQVK 112 (172)
T ss_dssp TTEECEEECCSSCCCC------------------TTTTCEEEECCCTTCCHHHHH
T ss_pred cCceeeecCCcccCCC------------------CCCCEEEEEcCCCcCCHHHHH
Confidence 9999999987544221 114899999999999999884
No 82
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=6.4e-20 Score=118.56 Aligned_cols=84 Identities=21% Similarity=0.544 Sum_probs=74.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP-ITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~-~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
......++|||+|||.++++++|+++|.+|| |.++.++.++ .+|+++|||||+|.+.++|+.|+ .|+|..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3455569999999999999999999999999 9999999988 58999999999999999999999 8999999999999
Q ss_pred EEecccC
Q psy2136 118 VHFPHVQ 124 (166)
Q Consensus 118 v~~a~~~ 124 (166)
|.++.+.
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998654
No 83
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.81 E-value=1.8e-19 Score=135.04 Aligned_cols=97 Identities=18% Similarity=0.464 Sum_probs=87.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||+++++++|+.+|..||.|..+.+.+ ++|||||+|.+.+.|+.|+..|+|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 344558999999999999999999999999999999854 47899999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 120 FPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 120 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
++.+ ..+|||+|||+.+|+++|+
T Consensus 92 ~a~~------------------------~~~l~v~nl~~~~t~~~l~ 114 (261)
T 3sde_A 92 FATH------------------------GAALTVKNLSPVVSNELLE 114 (261)
T ss_dssp ECCC------------------------SSEEEEESCCTTCCHHHHH
T ss_pred eccc------------------------CCcccccCCCCCCCHHHHH
Confidence 9853 3689999999999999884
No 84
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=4.4e-19 Score=112.67 Aligned_cols=83 Identities=24% Similarity=0.490 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.+.++|||+|||.++++++|+++|.+||.|..+.++.+ +++++|||||+|.+.+.|+.|+..|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999884 6889999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy2136 122 HVQVG 126 (166)
Q Consensus 122 ~~~~~ 126 (166)
++...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 76644
No 85
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=117.30 Aligned_cols=84 Identities=29% Similarity=0.576 Sum_probs=76.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
......++|||+|||.++++++|+++|.+||.|.++.++.++ +.++|||||+|.+.++|+.|+..|+|..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344556899999999999999999999999999999999885 448999999999999999999999999999999999
Q ss_pred EecccC
Q psy2136 119 HFPHVQ 124 (166)
Q Consensus 119 ~~a~~~ 124 (166)
.+++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998754
No 86
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-20 Score=115.24 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.++++|||+|||.++++++|+++|.+||.|.++.++.++.+++++|||||+|.+.++|+.|+..|+|..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999887765
Q ss_pred c
Q psy2136 122 H 122 (166)
Q Consensus 122 ~ 122 (166)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 87
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=2.2e-18 Score=115.43 Aligned_cols=87 Identities=22% Similarity=0.429 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
....+++|||+|||..+++++|+++|.+||.|.++.++.++ +|+++|||||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44566899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy2136 120 FPHVQVGR 127 (166)
Q Consensus 120 ~a~~~~~~ 127 (166)
++......
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99766544
No 88
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=113.64 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIR----QAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.+.++|||+|||.++++++|+ ++|.+||.|.++.++.++.+ +|||||+|.+.++|+.|+..|+|..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345899999999999999999 99999999999999988754 78999999999999999999999999999999
Q ss_pred EEecccCCC
Q psy2136 118 VHFPHVQVG 126 (166)
Q Consensus 118 v~~a~~~~~ 126 (166)
|.++++...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999976543
No 89
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-19 Score=116.11 Aligned_cols=88 Identities=22% Similarity=0.275 Sum_probs=78.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHH---HhcccCCCeeEEEEeeCCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIR---QAFLPFGPIKSINMSWDPITQ---KHKGFAFVEYDIPEAAQLSLEQMNGVMLG 112 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~---~~f~~~g~i~~v~i~~~~~~~---~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 112 (166)
......++|||+|||+++++++|+ ++|.+||.|..+.++.++.++ +++|||||+|.+.++|+.|+..|++..+.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 344446899999999999999999 999999999999999887644 56699999999999999999999999999
Q ss_pred CeeEEEEecccCCC
Q psy2136 113 GRNIKVHFPHVQVG 126 (166)
Q Consensus 113 g~~l~v~~a~~~~~ 126 (166)
|+.|+|.++.++..
T Consensus 90 gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 90 GRTLKASLGTTKYC 103 (111)
T ss_dssp TEEEEEESCCCCSC
T ss_pred CEEEEEEecccccc
Confidence 99999999987753
No 90
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.80 E-value=1.5e-19 Score=129.48 Aligned_cols=117 Identities=21% Similarity=0.464 Sum_probs=88.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccC----C-------CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPF----G-------PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML 111 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~----g-------~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 111 (166)
..++|||+|||.++++++|+++|.+| | .|.++.+ ++++|||||+|.+.++|+.|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35899999999999999999999999 5 5666665 456899999999999999999 7999999
Q ss_pred CCeeEEEEecccCCCCCCCCCcccchh--hhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 112 GGRNIKVHFPHVQVGRPSNMPQAQSVI--DEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 112 ~g~~l~v~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.|+.|.|.++................. ...........+|||+|||.++++++|+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 132 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVK 132 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHH
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 999999999876543322111110000 0001112346899999999999999884
No 91
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=5.1e-19 Score=123.10 Aligned_cols=87 Identities=23% Similarity=0.488 Sum_probs=81.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
....++|||+|||+++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.+.|+.|+..|+|..+.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34468999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy2136 121 PHVQVGR 127 (166)
Q Consensus 121 a~~~~~~ 127 (166)
+.+...+
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9876443
No 92
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=110.57 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
....++|||+|||.++++++|+++|.+| .|..+.++.+ .+|+++|||||+|.+.++|+.|+. |++..+.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456899999999999999999999999 8999999999 689999999999999999999999 999999999999999
Q ss_pred cccCC
Q psy2136 121 PHVQV 125 (166)
Q Consensus 121 a~~~~ 125 (166)
+.+..
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 87653
No 93
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=7.2e-19 Score=123.43 Aligned_cols=88 Identities=33% Similarity=0.483 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...++++|||+|||..+++++|+.+|.+||.|..+.++.++.+|.++|||||+|.+.+.|+.|+..|+|..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy2136 120 FPHVQVGR 127 (166)
Q Consensus 120 ~a~~~~~~ 127 (166)
|+.+...+
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99876543
No 94
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=118.49 Aligned_cols=82 Identities=18% Similarity=0.352 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
...++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.+.|+.|+ .|++..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34589999999999999999999999999999999999988999999999999999999999 89999999999999998
Q ss_pred ccC
Q psy2136 122 HVQ 124 (166)
Q Consensus 122 ~~~ 124 (166)
.+.
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 654
No 95
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=116.77 Aligned_cols=81 Identities=31% Similarity=0.578 Sum_probs=77.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.++|||+|||..+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|+.|+..|+|..+.|+.|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999865
Q ss_pred C
Q psy2136 124 Q 124 (166)
Q Consensus 124 ~ 124 (166)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 4
No 96
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=1.9e-19 Score=115.01 Aligned_cols=80 Identities=20% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|+..|++..+.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35899999999999999999999999999888888888889999999999999999999999999999999999999875
No 97
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-18 Score=113.33 Aligned_cols=85 Identities=16% Similarity=0.422 Sum_probs=77.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-------
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML------- 111 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~------- 111 (166)
....+.++|||+|||.++++++|+++|.+||.|..+.++.++ ++.++|||||+|.+.+.|+.|+..|+|..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344556899999999999999999999999999999999998 899999999999999999999999999998
Q ss_pred -CCeeEEEEecccC
Q psy2136 112 -GGRNIKVHFPHVQ 124 (166)
Q Consensus 112 -~g~~l~v~~a~~~ 124 (166)
.++.|.|.|+.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5778999998754
No 98
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=117.28 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++|||+|||+++++++|+.+|.+||.|.++.++.++. |+++|||||+|.+.++|+.|+. +++..+.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 458999999999999999999999999999999999986 9999999999999999999999 89999999999999875
Q ss_pred c
Q psy2136 123 V 123 (166)
Q Consensus 123 ~ 123 (166)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 99
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.6e-19 Score=122.86 Aligned_cols=89 Identities=22% Similarity=0.479 Sum_probs=81.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
....+.++|||+|||.++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.+.|+.|+..|++..+.|+.|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34445689999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.++++....
T Consensus 122 ~~a~~~~~~ 130 (135)
T 2lea_A 122 QMARYGRPP 130 (135)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999876544
No 100
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=115.79 Aligned_cols=85 Identities=22% Similarity=0.367 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCC-eeEEEEe-eCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCeeEEE
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGP-IKSINMS-WDPITQKHKGFAFVEYDIPEAAQLSLEQMN--GVMLGGRNIKV 118 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~-~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--~~~~~g~~l~v 118 (166)
+.++|||+|||.++++++|+++|.+||. |..+.++ .++.+|+++|||||+|.+.+.|+.|+..|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4589999999999999999999999998 9999998 788888999999999999999999999996 58999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.|+.+....
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999876543
No 101
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=111.29 Aligned_cols=86 Identities=21% Similarity=0.331 Sum_probs=77.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
......++|||+|||.++++++|+++|..|+ .+.++.++.+++++|||||+|.+.++|+.|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445668999999999999999999999774 6788888888999999999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.++++...+
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999876544
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=114.96 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeeEEEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG--VMLGGRNIKVH 119 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~--~~~~g~~l~v~ 119 (166)
.+.++|||+|||+++++++|+++|.+||.|.++.++.+ +|||||+|.+.++|+.|+..|++ ..+.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34589999999999999999999999999999999864 68999999999999999998864 78999999999
Q ss_pred ecccCCCCCC
Q psy2136 120 FPHVQVGRPS 129 (166)
Q Consensus 120 ~a~~~~~~~~ 129 (166)
+++++.....
T Consensus 88 ~A~~~~~~~~ 97 (105)
T 1sjq_A 88 FSNHKELKTD 97 (105)
T ss_dssp CCSSSSCCCT
T ss_pred EcCCCCCCcc
Confidence 9987655443
No 103
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.79 E-value=2.1e-19 Score=136.40 Aligned_cols=113 Identities=13% Similarity=0.228 Sum_probs=89.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
...++|||+|||..+++++|+++|.+|| .|..+.++.++. |.++|||||+|.+.+.|..|+..|+|..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999998865 78899999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcC-CCccccC
Q psy2136 121 PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD-LTEEDIK 166 (166)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~tee~Lr 166 (166)
+.+....... ........+|||+|||++ +|+++|+
T Consensus 194 a~~~~~~~~~-----------~~~~~~~~~l~v~nlp~~~~t~~~l~ 229 (292)
T 2ghp_A 194 SNPLEKSKRT-----------DSATLEGREIMIRNLSTELLDENLLR 229 (292)
T ss_dssp CCCC--------------------CCTTTEEEEEEECTTTCCHHHHH
T ss_pred CCCCcccccc-----------cccCCCCceEEEECCCcccCCHHHHH
Confidence 8765433221 112234689999999999 9999884
No 104
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.4e-19 Score=110.74 Aligned_cols=75 Identities=19% Similarity=0.472 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 46 ~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
+|||+|||+++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.+.|++|+. +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998889999999999999999999998 8999999999999875
No 105
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=5.9e-20 Score=116.31 Aligned_cols=81 Identities=23% Similarity=0.495 Sum_probs=73.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ 124 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 124 (166)
++|||+|||.++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.+ |+.|+..|+|..+.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999999765
Q ss_pred CC
Q psy2136 125 VG 126 (166)
Q Consensus 125 ~~ 126 (166)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 106
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.7e-18 Score=109.98 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCeeCCeeE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM--NGVMLGGRNI 116 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l--~~~~~~g~~l 116 (166)
....+.++|||+|||+.+++++|+++|.+||.|.++.++.+ +|||||+|.+.+.|+.|+..| ++..+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34445689999999999999999999999999999988754 789999999999999999977 4678999999
Q ss_pred EEEecccCCCC
Q psy2136 117 KVHFPHVQVGR 127 (166)
Q Consensus 117 ~v~~a~~~~~~ 127 (166)
+|.+++.+...
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999766543
No 107
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-18 Score=110.82 Aligned_cols=83 Identities=23% Similarity=0.348 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||.++++++|+++|.+||.| .++.+ .+++++|||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34456899999999999999999999999976 55665 578899999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy2136 120 FPHVQVG 126 (166)
Q Consensus 120 ~a~~~~~ 126 (166)
++.+...
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987644
No 108
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=9.3e-19 Score=114.68 Aligned_cols=81 Identities=27% Similarity=0.601 Sum_probs=72.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
......++|||+|||.++++++|+++|.+||.|..+.++ +|||||+|.+.++|+.|+..|+|..+.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344556899999999999999999999999999999986 679999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.++++...+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999876544
No 109
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-19 Score=110.38 Aligned_cols=76 Identities=24% Similarity=0.493 Sum_probs=72.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
++|||+|||.++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.++|+.|+..++ ..+.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999988 9999999999986
No 110
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.78 E-value=1.2e-18 Score=131.61 Aligned_cols=93 Identities=18% Similarity=0.307 Sum_probs=84.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
+.++|||+|||.++++++|+++|.+|| |.++.+ ++++|||||+|.+.++|+.|+..|+|..+.|+.+.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 458999999999999999999999999 888887 4568899999999999999999999999999999999853
Q ss_pred cCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 123 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
. ..+|||+|||+++|+++|+
T Consensus 94 ~------------------------~~~l~v~nlp~~~t~~~l~ 113 (284)
T 3smz_A 94 T------------------------DALLCVANLPPSLTQQQFE 113 (284)
T ss_dssp C------------------------SCEEEEESCCTTCCHHHHH
T ss_pred C------------------------CCEEEEcCCCCcCCHHHHH
Confidence 1 2699999999999999884
No 111
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=113.72 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCC------CHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q psy2136 41 SNSPLRVYVGSISFEL------KEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGR 114 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~------~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~ 114 (166)
....++|||+|||..+ ++++|+.+|.+||.|.++.++ +.+|+++|||||+|.+.+.|+.|+..|+|..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3345899999999999 679999999999999999988 35789999999999999999999999999999998
Q ss_pred -eEEEEecccC
Q psy2136 115 -NIKVHFPHVQ 124 (166)
Q Consensus 115 -~l~v~~a~~~ 124 (166)
.|+|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998643
No 112
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-18 Score=110.82 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||+++++++|+++|.+||. .++.++.++ +++++|||||+|.+.++|++|+. +++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3445589999999999999999999999995 499999997 89999999999999999999995 79999999999999
Q ss_pred ecccCCC
Q psy2136 120 FPHVQVG 126 (166)
Q Consensus 120 ~a~~~~~ 126 (166)
++.+...
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 8875543
No 113
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=112.35 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeeE
Q psy2136 40 NSNSPLRVYVGSISF-ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG--VMLGGRNI 116 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~--~~~~g~~l 116 (166)
..++.++|||+|||+ .+++++|+++|.+||.|.++.++++ +|||||+|.+.++|+.|+..|++ ..+.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 344678999999999 9999999999999999999999764 47999999999999999999886 46999999
Q ss_pred EEEecccC
Q psy2136 117 KVHFPHVQ 124 (166)
Q Consensus 117 ~v~~a~~~ 124 (166)
+|.++...
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999754
No 114
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=115.52 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCe-eEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i-~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
....++|||+|||+++++++|+++|..||.+ ..+.++.++ +|+++|||||+|.+.++|+.|+.. ++..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 889999998 899999999999999999999986 9999999999999
Q ss_pred ecccC
Q psy2136 120 FPHVQ 124 (166)
Q Consensus 120 ~a~~~ 124 (166)
++.+.
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98644
No 115
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.78 E-value=1.4e-18 Score=131.87 Aligned_cols=99 Identities=16% Similarity=0.268 Sum_probs=86.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||.++++++|+++|..||.|.++.++.++.+ ++|||||+|.+.++|+.|+. +++..+.|+.|.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 4455789999999999999999999999999999999998632 57999999999999999995 89999999999999
Q ss_pred ecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 120 FPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 120 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
++. ..+|||+|||+++++++|+
T Consensus 114 ~~~-------------------------~~~l~v~nlp~~~t~~~l~ 135 (292)
T 2ghp_A 114 HLT-------------------------ECTLWMTNFPPSYTQRNIR 135 (292)
T ss_dssp ECC-------------------------SCEEEEECCCTTCCHHHHH
T ss_pred ECC-------------------------CCEEEEECCCCCCCHHHHH
Confidence 852 4799999999999999874
No 116
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.7e-18 Score=109.68 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-----eeE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG-----RNI 116 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g-----~~l 116 (166)
...++|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|+.|++.|++..+.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 44689999999999999999999999999999999765 799999999999999999999999999 999
Q ss_pred EEEecccCCCCC
Q psy2136 117 KVHFPHVQVGRP 128 (166)
Q Consensus 117 ~v~~a~~~~~~~ 128 (166)
+|.++.+.....
T Consensus 86 ~V~~a~~~~~~~ 97 (108)
T 1x4c_A 86 RVKVDGPRSPSY 97 (108)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998765543
No 117
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-19 Score=117.12 Aligned_cols=85 Identities=20% Similarity=0.366 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
....++|||+|||.++++++|+.+|.+||.+.. .++.++.+|+++|||||+|.+.+.|+.|+. |++..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999998877 666666678899999999999999999999 999999999999999
Q ss_pred cccCCCC
Q psy2136 121 PHVQVGR 127 (166)
Q Consensus 121 a~~~~~~ 127 (166)
+.+...+
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9766544
No 118
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-18 Score=110.16 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeE-EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKS-INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~-v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
.....++|||+|||+++++++|+++|.+||.|.. +.++.+ .+|+++|||||+|.+.++|+.|+.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3345689999999999999999999999999987 888888 6899999999999999999999997 999999999999
Q ss_pred EecccC
Q psy2136 119 HFPHVQ 124 (166)
Q Consensus 119 ~~a~~~ 124 (166)
.++...
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 988644
No 119
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=106.75 Aligned_cols=77 Identities=25% Similarity=0.538 Sum_probs=70.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeeEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM-NGVMLGGRNIKV 118 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l-~~~~~~g~~l~v 118 (166)
.....++|||+|||..+++++|+++|.+||.|..+.++.+ +|||||+|.+.+.|+.|+..| ++..+.|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3445689999999999999999999999999999999763 789999999999999999999 999999999999
Q ss_pred Eecc
Q psy2136 119 HFPH 122 (166)
Q Consensus 119 ~~a~ 122 (166)
.|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 120
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=110.22 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe--eCCeeEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVM--LGGRNIKV 118 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~--~~g~~l~v 118 (166)
..++++|||+|||..+++++|+++|.+||.|.++.+++ .+|||||+|.+.++|..|+..|++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34568999999999999999999999999999999874 36899999999999999999998865 77999999
Q ss_pred EecccC
Q psy2136 119 HFPHVQ 124 (166)
Q Consensus 119 ~~a~~~ 124 (166)
.+++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999765
No 121
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.5e-18 Score=109.90 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeeEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG--VMLGGRNIKV 118 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~--~~~~g~~l~v 118 (166)
..+.++|||+|||+.+++++|+++|.+||.|.++.++.+ +|||||+|.+.++|+.|+..|++ ..+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 344689999999999999999999999999999988753 68999999999999999998865 4589999999
Q ss_pred EecccCCCC
Q psy2136 119 HFPHVQVGR 127 (166)
Q Consensus 119 ~~a~~~~~~ 127 (166)
.++..+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999866543
No 122
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.1e-19 Score=115.66 Aligned_cols=84 Identities=23% Similarity=0.324 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCe----eEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPI----KSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i----~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
..+.++|||+|||.++++++|+++|.+||.| ..+.+. +++++|||||+|.+.+.|+.|+..|++..+.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3456899999999999999999999999988 445543 68889999999999999999999999999999999
Q ss_pred EEEecccCCCCC
Q psy2136 117 KVHFPHVQVGRP 128 (166)
Q Consensus 117 ~v~~a~~~~~~~ 128 (166)
+|.++.+...+.
T Consensus 98 ~v~~a~~~~~~~ 109 (115)
T 2cpx_A 98 VIEFGKNKKQRS 109 (115)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEEccCCCCCC
Confidence 999998765443
No 123
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=3e-18 Score=113.93 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCC---eeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGP---IKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~---i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
....++|||+|||+++++++|+++|..||. |..+.++.++. |+++|||||+|.+.++|++|+. +++..+.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345689999999999999999999999998 88999999976 9999999999999999999999 999999999999
Q ss_pred EEeccc
Q psy2136 118 VHFPHV 123 (166)
Q Consensus 118 v~~a~~ 123 (166)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998753
No 124
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.2e-18 Score=112.63 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCeeEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG--VMLGGRNIK 117 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~--~~~~g~~l~ 117 (166)
...+.++|||+|||+++++++|+++|.+||.|.++.++.+ +|||||+|.+.++|+.|+..|++ ..+.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3445689999999999999999999999999999999864 68999999999999999998874 689999999
Q ss_pred EEecccCCCCC
Q psy2136 118 VHFPHVQVGRP 128 (166)
Q Consensus 118 v~~a~~~~~~~ 128 (166)
|.+++.+..+.
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998765544
No 125
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8.1e-18 Score=106.45 Aligned_cols=78 Identities=22% Similarity=0.401 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
.+.++|||+|||.++++++|+++|.+||.|..+.++ +|||||+|.+.++|+.|+..|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 345899999999999999999999999999999986 579999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy2136 122 HVQVGR 127 (166)
Q Consensus 122 ~~~~~~ 127 (166)
.+....
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876544
No 126
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-18 Score=108.76 Aligned_cols=80 Identities=21% Similarity=0.492 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
...+.++|||+|||..+++++|+++|.+||.|..+.++.+ +|||||+|.+.+.|+.|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3445689999999999999999999999999999998753 6899999999999999999999999999999999
Q ss_pred ecccCC
Q psy2136 120 FPHVQV 125 (166)
Q Consensus 120 ~a~~~~ 125 (166)
++.+..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 997654
No 127
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=116.39 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=75.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||+++++++|+++|..||.|..+.++.+..+|+++|||||+|.+.++|+.|+. |++..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34456899999999999999999999999999886666666789999999999999999999999 99999999999999
Q ss_pred eccc
Q psy2136 120 FPHV 123 (166)
Q Consensus 120 ~a~~ 123 (166)
++..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9854
No 128
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=5e-18 Score=112.13 Aligned_cols=82 Identities=17% Similarity=0.396 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
+..+++|||+|||..+++++|+.+|.+||.|.++.++.+ +.++|||||+|.+.++|+.|+..|+|..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999875 55689999999999999999999999999999999999
Q ss_pred cccCC
Q psy2136 121 PHVQV 125 (166)
Q Consensus 121 a~~~~ 125 (166)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 97554
No 129
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=2.3e-18 Score=117.18 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=76.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCC---eeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGP---IKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRN 115 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~---i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~ 115 (166)
......++|||+|||+++++++|+++|.+||. |.++.++.++. |+++|||||+|.+.++|++|+. +++..+.|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34455689999999999999999999999999 88999999986 9999999999999999999999 9999999999
Q ss_pred EEEEecc
Q psy2136 116 IKVHFPH 122 (166)
Q Consensus 116 l~v~~a~ 122 (166)
|.|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999875
No 130
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.6e-18 Score=108.33 Aligned_cols=80 Identities=28% Similarity=0.523 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC--CeeEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG--GRNIKV 118 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~--g~~l~v 118 (166)
..+.++|||+|||.++++++|+++|.+||.|.++.+..+ +|||||+|.+.++|+.|+..|++..+. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 344589999999999999999999999999999988643 679999999999999999999999999 999999
Q ss_pred EecccCCC
Q psy2136 119 HFPHVQVG 126 (166)
Q Consensus 119 ~~a~~~~~ 126 (166)
.+++++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987643
No 131
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=8.9e-18 Score=107.89 Aligned_cols=78 Identities=21% Similarity=0.499 Sum_probs=70.4
Q ss_pred CCCCCCCEEEEcCCCC-CCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 39 VNSNSPLRVYVGSISF-ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
....+.++|||+|||. ++++++|+++|.+||.|.++.+. +|||||+|.+.++|+.|+..|+|..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445568999999998 99999999999999999999882 68999999999999999999999999999999
Q ss_pred EEecccC
Q psy2136 118 VHFPHVQ 124 (166)
Q Consensus 118 v~~a~~~ 124 (166)
|.+++..
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998654
No 132
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.3e-18 Score=110.13 Aligned_cols=82 Identities=29% Similarity=0.504 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||..+++++|+.+|.+||.|..+.++.+ +|||||+|.+.+.|+.|+..|+|..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3345689999999999999999999999999999999765 6899999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy2136 120 FPHVQVGR 127 (166)
Q Consensus 120 ~a~~~~~~ 127 (166)
|+++....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99876543
No 133
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=114.65 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIR----QAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.+.++|||+|||+.+++++|+ ++|.+||.|.++.+.. +++++|||||+|.+.++|+.|+..|+|..+.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 346899999999999998865 6899999999888753 578899999999999999999999999999999999
Q ss_pred EEecccC
Q psy2136 118 VHFPHVQ 124 (166)
Q Consensus 118 v~~a~~~ 124 (166)
|.|++..
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9998754
No 134
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-17 Score=105.45 Aligned_cols=80 Identities=20% Similarity=0.432 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||.++++++|+++|.+||.|..+.++ ++||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34556899999999999999999999999999999986 3499999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy2136 120 FPHVQVGR 127 (166)
Q Consensus 120 ~a~~~~~~ 127 (166)
++.+....
T Consensus 78 ~a~~~~~~ 85 (92)
T 2dgt_A 78 LSTSRLRT 85 (92)
T ss_dssp ESSCCCSC
T ss_pred EccCCCCC
Confidence 99876544
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=2.1e-17 Score=108.31 Aligned_cols=77 Identities=23% Similarity=0.510 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 41 SNSPLRVYVGSISFE-LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~-~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
....++|||+|||.. +++++|+++|.+||.|..+.+ ++|||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 334589999999999 999999999999999999988 47899999999999999999999999999999999
Q ss_pred ecccCC
Q psy2136 120 FPHVQV 125 (166)
Q Consensus 120 ~a~~~~ 125 (166)
++....
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997543
No 136
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=2e-18 Score=110.62 Aligned_cols=82 Identities=22% Similarity=0.430 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIR----QAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~----~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
..+.++|||+|||.++++++|+ ++|.+||.|..+.++. +|+++|||||+|.+.++|+.|+..|+|..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3456899999999999999999 9999999999998863 46788999999999999999999999999999999
Q ss_pred EEEecccCC
Q psy2136 117 KVHFPHVQV 125 (166)
Q Consensus 117 ~v~~a~~~~ 125 (166)
+|.++++..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999987653
No 137
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8e-18 Score=107.96 Aligned_cols=81 Identities=23% Similarity=0.474 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||.++++++|+.+|.+||.|. +.++. ++++|||||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344468999999999999999999999999986 56654 3578999999999999999999999999999999999
Q ss_pred ecccCC
Q psy2136 120 FPHVQV 125 (166)
Q Consensus 120 ~a~~~~ 125 (166)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997653
No 138
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.4e-18 Score=126.77 Aligned_cols=81 Identities=19% Similarity=0.303 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCC--CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFG--PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g--~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
..++|||+||++++++++|+++|.+|| .|.++.|+.++.+++++|||||+|.+.+.|++||..|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy2136 121 PHV 123 (166)
Q Consensus 121 a~~ 123 (166)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.4e-18 Score=112.22 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
....++|||+|||.++++++|+.+|.+||.|.++.+. +++|||||+|.+.++|+.|+..|+|..+.|+.|+|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3345899999999999999999999999999999986 3578999999999999999999999999999999999
Q ss_pred ccc
Q psy2136 121 PHV 123 (166)
Q Consensus 121 a~~ 123 (166)
+++
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 140
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=108.18 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=67.0
Q ss_pred CCEEEEcCCCCCC------CHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe-eE
Q psy2136 44 PLRVYVGSISFEL------KEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGR-NI 116 (166)
Q Consensus 44 ~~~v~v~nl~~~~------~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~-~l 116 (166)
+++|||+|||..+ ++++|+++|.+||.|.++.++ +.+|+++|||||+|.+.++|+.|+..|+|..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999999987 35789999999999999999999999999999998 87
Q ss_pred EE
Q psy2136 117 KV 118 (166)
Q Consensus 117 ~v 118 (166)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 141
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=5.3e-18 Score=105.93 Aligned_cols=72 Identities=19% Similarity=0.347 Sum_probs=68.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
+..|||+||++.+++++|+++|.+||+|.++.+.. ++|||||+|.+.++|+.|++.||+..+.|+.|+|.+|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 46899999999999999999999999999999854 5899999999999999999999999999999999988
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=109.08 Aligned_cols=82 Identities=22% Similarity=0.425 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
..+.++|||+|||..+++++|+++|.+||.|..+ ..+++++|||||+|.+.++|+.|+..|+|..+.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999987665 24688999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy2136 121 PHVQVGR 127 (166)
Q Consensus 121 a~~~~~~ 127 (166)
+.+...+
T Consensus 88 a~~~~~~ 94 (96)
T 1fjc_A 88 TGEKGGT 94 (96)
T ss_dssp CSSSCCC
T ss_pred cCCCCCC
Confidence 9766543
No 143
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=105.14 Aligned_cols=79 Identities=23% Similarity=0.427 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
....++|||+|||.++++++|+++|.+||.|..+.++ ++||||+|.+.++|+.|+..|++..+.|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999986 34999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy2136 121 PHVQVGR 127 (166)
Q Consensus 121 a~~~~~~ 127 (166)
+.+...+
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876443
No 144
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5e-17 Score=104.53 Aligned_cols=78 Identities=23% Similarity=0.403 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccC--CCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPF--GPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~--g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
....++|||+|||..+++++|+++|.+| |.|..+.++ +|||||+|.+.+.|+.|+..|++..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3446899999999999999999999999 889888763 569999999999999999999999999999999
Q ss_pred EecccCCC
Q psy2136 119 HFPHVQVG 126 (166)
Q Consensus 119 ~~a~~~~~ 126 (166)
.++++...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 145
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=113.27 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCC---eeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGP---IKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~---i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
.....++|||+|||+++++++|+++|..||. |..+.++.++. |+++|||||+|.+.++|+.|+. +++..+.|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4455689999999999999999999999988 89999999986 9999999999999999999999 99999999999
Q ss_pred EEEeccc
Q psy2136 117 KVHFPHV 123 (166)
Q Consensus 117 ~v~~a~~ 123 (166)
+|.++.+
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998754
No 146
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=5.6e-18 Score=111.37 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
+...++|||+|||+++++++|+++|.+|| .|..+.+.. ++++|||||+|.+.++|+.|++.|+|..+.|+.|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34458999999999999999999999999 899888853 3478999999999999999999999999999999999
Q ss_pred ecccC
Q psy2136 120 FPHVQ 124 (166)
Q Consensus 120 ~a~~~ 124 (166)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98644
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.6e-17 Score=113.68 Aligned_cols=83 Identities=27% Similarity=0.595 Sum_probs=78.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|+|||+|.+.++|..|+..|+|..+.|+.|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecc
Q psy2136 120 FPH 122 (166)
Q Consensus 120 ~a~ 122 (166)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 148
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=9.7e-19 Score=106.93 Aligned_cols=75 Identities=27% Similarity=0.509 Sum_probs=71.0
Q ss_pred EEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 46 ~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
+|||+|||.++++++|+++|.+||.|.++.++.++.+|+++|||||+|.+.+.|+.|+.. ++..+.|+.+.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988999999999999999999999994 899999999999875
No 149
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=109.13 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=71.2
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCee
Q psy2136 39 VNSNSPLRVYVGSISFE-LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN--GVMLGGRN 115 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~-~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--~~~~~g~~ 115 (166)
....++++|||+|||++ +++++|+++|.+||.|.++.+++ .+|||||+|.+.++|+.|+..|+ +..+.|+.
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34556789999999998 99999999999999999999864 47899999999999999999885 45699999
Q ss_pred EEEEecccCC
Q psy2136 116 IKVHFPHVQV 125 (166)
Q Consensus 116 l~v~~a~~~~ 125 (166)
|+|.++....
T Consensus 94 l~V~~a~~~~ 103 (112)
T 1x4f_A 94 VKVDLSEKYK 103 (112)
T ss_dssp CEEEEECSCS
T ss_pred EEEEECcccc
Confidence 9999987553
No 150
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=9.5e-20 Score=120.73 Aligned_cols=86 Identities=27% Similarity=0.389 Sum_probs=79.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKS--------INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG 113 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 113 (166)
.+.++|||+|||..+++++|+++|.+||.|.. +.++.++.+++++|||||+|.+.++|+.|+..|++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 44589999999999999999999999999998 8999998889999999999999999999999999999999
Q ss_pred eeEEEEecccCCCC
Q psy2136 114 RNIKVHFPHVQVGR 127 (166)
Q Consensus 114 ~~l~v~~a~~~~~~ 127 (166)
+.|+|.++.+...+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876544
No 151
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=3.6e-18 Score=110.52 Aligned_cols=81 Identities=26% Similarity=0.436 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++|||+|||.++++++|+++|.+||.|.++.++.++ +|+++|||||+|.+.+.|+.|+. ++..+.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 35899999999999999999999999999999999998 89999999999999999999998 9999999999999987
Q ss_pred cCCC
Q psy2136 123 VQVG 126 (166)
Q Consensus 123 ~~~~ 126 (166)
+...
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6543
No 152
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=109.43 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
...+|||+|||+++++++|+++|..| .|.++.++.++. |+++|||||+|.+.++|++|+ .+++..+.|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34799999999999999999999999 799999999975 899999999999999999999 589999999999998874
No 153
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=3.9e-17 Score=105.84 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
+.++|||+|||.++++++|+++|.+||.|..+.++ ++||||+|.+.++|+.|+..|++..+.|+.|.|.++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 45899999999999999999999999999999885 4599999999999999999999999999999999998
Q ss_pred cCCCCC
Q psy2136 123 VQVGRP 128 (166)
Q Consensus 123 ~~~~~~ 128 (166)
+.....
T Consensus 82 ~~~~~~ 87 (103)
T 2dgu_A 82 PPDQKR 87 (103)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 765543
No 154
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.1e-17 Score=107.07 Aligned_cols=78 Identities=19% Similarity=0.474 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 41 SNSPLRVYVGSISF-ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 41 ~~~~~~v~v~nl~~-~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
..+.++|||+|||. .+++++|+.+|.+||.|.++.+. +|||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44568999999998 99999999999999999999883 6799999999999999999999999999999999
Q ss_pred ecccCCC
Q psy2136 120 FPHVQVG 126 (166)
Q Consensus 120 ~a~~~~~ 126 (166)
++++...
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9976544
No 155
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.3e-17 Score=102.93 Aligned_cols=80 Identities=26% Similarity=0.417 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|+ ++++++|+++|.+||.|..+.+. +++|||||+|.+.+.|+.|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3445689999996 89999999999999999999884 467899999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy2136 120 FPHVQVGR 127 (166)
Q Consensus 120 ~a~~~~~~ 127 (166)
++.+....
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99766543
No 156
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=105.99 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCC-eeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeeCCeeEEEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGP-IKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG-VMLGGRNIKVH 119 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~-i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~-~~~~g~~l~v~ 119 (166)
...++|||+|||.++++++|+++|.+||. +..+.+. ++|||||+|.+.++|+.|+..|++ ..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34589999999999999999999999999 5555552 478999999999999999999999 99999999999
Q ss_pred ecccCCCCCC
Q psy2136 120 FPHVQVGRPS 129 (166)
Q Consensus 120 ~a~~~~~~~~ 129 (166)
++.+...+.+
T Consensus 79 ~a~~~~~~~~ 88 (93)
T 2cqh_A 79 YSVSKKLRSS 88 (93)
T ss_dssp ECCCCCCCCC
T ss_pred EccCccccCC
Confidence 9987655433
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.4e-17 Score=103.47 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++|||+|||.++++++|+.+|.+||.|.++ +.++.+++ ||||+|.+.+.|+.|+. |++..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34799999999999999999999999999987 55655555 99999999999999999 99999999999999886
Q ss_pred cCCCC
Q psy2136 123 VQVGR 127 (166)
Q Consensus 123 ~~~~~ 127 (166)
+....
T Consensus 81 ~~~~~ 85 (94)
T 2e5g_A 81 QKEFQ 85 (94)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 55433
No 158
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=2e-17 Score=114.14 Aligned_cols=81 Identities=26% Similarity=0.507 Sum_probs=74.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
......++|||+|||+++++++|+++|.+||.|.++.++.+ ++|||||+|.+.+.|+.|+..|+|..+.|+.|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34455689999999999999999999999999999999765 5889999999999999999999999999999999
Q ss_pred EecccC
Q psy2136 119 HFPHVQ 124 (166)
Q Consensus 119 ~~a~~~ 124 (166)
.++.+.
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998765
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.3e-17 Score=117.02 Aligned_cols=83 Identities=23% Similarity=0.444 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
...+++|||+|||..+++++|+++|.+||.|..+.++.++ ++.++|||||+|.+.++|+.|+..|++..+.|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3446899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccC
Q psy2136 121 PHVQ 124 (166)
Q Consensus 121 a~~~ 124 (166)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8654
No 160
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=105.37 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEE-EEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSI-NMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v-~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
....++|||+|||+++++++|+.+|.+||.|.++ .++.++.++ .|||+|.+.+.|+.|+..|+|..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3445899999999999999999999999999999 477775433 39999999999999999999999999999999
Q ss_pred ecccC
Q psy2136 120 FPHVQ 124 (166)
Q Consensus 120 ~a~~~ 124 (166)
++.+.
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 98765
No 161
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2e-17 Score=110.10 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=70.8
Q ss_pred CEEEEcCC----CCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCCe
Q psy2136 45 LRVYVGSI----SFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI----PEA----AQLSLE--QMNGVM 110 (166)
Q Consensus 45 ~~v~v~nl----~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~----~~~----a~~ai~--~l~~~~ 110 (166)
..|||+|| |+.+++.+|+++|.+||.|.++.++.|+.||.++|||||+|.+ .+. |..|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 888888 789999
Q ss_pred eCCeeEEEEecc
Q psy2136 111 LGGRNIKVHFPH 122 (166)
Q Consensus 111 ~~g~~l~v~~a~ 122 (166)
|.|+.++|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999753
No 162
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=5.4e-17 Score=129.72 Aligned_cols=85 Identities=24% Similarity=0.536 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
....++|||+|||..+++++|..+|.+||.|..|.|+.++.+|+++|||||+|.+.+.|+.||..|+|..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34458999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy2136 121 PHVQV 125 (166)
Q Consensus 121 a~~~~ 125 (166)
+.+..
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97654
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=6.8e-17 Score=113.16 Aligned_cols=81 Identities=26% Similarity=0.535 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
...++|||+|||..+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|++|+..|+|..+.|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q psy2136 122 H 122 (166)
Q Consensus 122 ~ 122 (166)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=1.9e-16 Score=113.26 Aligned_cols=86 Identities=27% Similarity=0.530 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
....++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.+.|+.|+..|+|..+.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35668999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy2136 121 PHVQVG 126 (166)
Q Consensus 121 a~~~~~ 126 (166)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 976543
No 165
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=6e-18 Score=115.95 Aligned_cols=83 Identities=24% Similarity=0.371 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKS--------INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG 112 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 112 (166)
..+.++|||+|||+.+++++|+.+|.+||.|.. +.+. .+|+++|||||+|.+.+.|+.|+..|+|..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 345689999999999999999999999998865 3333 35889999999999999999999999999999
Q ss_pred CeeEEEEecccCCC
Q psy2136 113 GRNIKVHFPHVQVG 126 (166)
Q Consensus 113 g~~l~v~~a~~~~~ 126 (166)
|+.|.|.+++....
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999976543
No 166
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=1e-16 Score=116.10 Aligned_cols=85 Identities=35% Similarity=0.581 Sum_probs=79.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
...++|||+|||..+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|..|+..|+|..+.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy2136 122 HVQVG 126 (166)
Q Consensus 122 ~~~~~ 126 (166)
.+...
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 76643
No 167
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7e-17 Score=106.15 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
+.++|||+|||..+++++|+.+|.+||.|..+.++. .+|||||+|.+.++|+.|+..|+|..+.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999999999999999999999998863 47899999999999999999999999999999999997
Q ss_pred cCCC
Q psy2136 123 VQVG 126 (166)
Q Consensus 123 ~~~~ 126 (166)
...-
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6543
No 168
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=9e-17 Score=101.24 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++|||+|||+++++++|+++|.+| .|.++.+. +++|||||+|.+.++|+.|+..|+|..+.|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 35789999999999999999999999 89988884 468999999999999999999999999999999999986
Q ss_pred cC
Q psy2136 123 VQ 124 (166)
Q Consensus 123 ~~ 124 (166)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 169
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=3.3e-17 Score=109.91 Aligned_cols=81 Identities=27% Similarity=0.322 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCee--EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIK--SINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~--~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
.....++|||+|||+++++++|+++|.+| .|. ++.++.++. |+++|||||+|.+.++|++|+.. ++..+.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 33456899999999999999999999999 576 899999986 99999999999999999999985 77999999999
Q ss_pred EEeccc
Q psy2136 118 VHFPHV 123 (166)
Q Consensus 118 v~~a~~ 123 (166)
|..+.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=2.1e-16 Score=112.88 Aligned_cols=85 Identities=25% Similarity=0.369 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 121 (166)
...++|||+|||..+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999999988999999999999999999999986 899999999999999
Q ss_pred ccCCCC
Q psy2136 122 HVQVGR 127 (166)
Q Consensus 122 ~~~~~~ 127 (166)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 766544
No 171
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.4e-17 Score=113.71 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
.....++|||+|||+++++++|+++|.+|| +.++.++.++. |+++|||||+|.+.++|++|+ .+++..+.|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445568999999999999999999999999 67999999975 999999999999999999999 689999999999999
Q ss_pred ecccCCC
Q psy2136 120 FPHVQVG 126 (166)
Q Consensus 120 ~a~~~~~ 126 (166)
.+.+...
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 8876543
No 172
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=109.07 Aligned_cols=79 Identities=24% Similarity=0.311 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCe----eEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPI----KSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i----~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~ 117 (166)
...++|||+|||+++++++|+++|.+||.| ..+.++.++ +|+++|||||+|.+.++|++|+.. ++..+.|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 445899999999999999999999999975 689999884 899999999999999999999996 99999999999
Q ss_pred EEecc
Q psy2136 118 VHFPH 122 (166)
Q Consensus 118 v~~a~ 122 (166)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98764
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=3.8e-16 Score=108.81 Aligned_cols=81 Identities=27% Similarity=0.475 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eeEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG--RNIKV 118 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v 118 (166)
....++|||+|||..+++++|+++|.+||.|..+.++.++.+|+++|+|||+|.+.++|..|+..|+|..+.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3456899999999999999999999999999999999998889999999999999999999999999999987 99999
Q ss_pred Eec
Q psy2136 119 HFP 121 (166)
Q Consensus 119 ~~a 121 (166)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 885
No 174
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=7e-16 Score=103.68 Aligned_cols=76 Identities=22% Similarity=0.402 Sum_probs=69.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEec
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF-AFVEYDIPEAAQLSLEQMNGVMLGG--RNIKVHFP 121 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~-afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~a 121 (166)
-.|||+||++.+++++|+++|.+||.|.++.+..+ .+|| |||+|.+.++|+.|+..|+|..|.| +.|+|+|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 57889999999999999999999999999988753 2577 9999999999999999999999998 99999999
Q ss_pred ccCC
Q psy2136 122 HVQV 125 (166)
Q Consensus 122 ~~~~ 125 (166)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8664
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=6.9e-17 Score=112.59 Aligned_cols=81 Identities=21% Similarity=0.388 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++|||+|||..+++++|+++|.+||.|.++.++.++.+|.++|||||+|.+.++|++|+. +++..+.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35799999999999999999999999999999999998889999999999999999999998 89999999999999987
Q ss_pred cC
Q psy2136 123 VQ 124 (166)
Q Consensus 123 ~~ 124 (166)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 176
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=4.1e-16 Score=108.58 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEe
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG--RNIKVHF 120 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~ 120 (166)
...+|||+||++.+++++|+++|.+||.|.++.+..+ +++|||||+|.+.++|+.|++.|+|..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3467999999999999999999999999999998653 257899999999999999999999999965 9999999
Q ss_pred cccCC
Q psy2136 121 PHVQV 125 (166)
Q Consensus 121 a~~~~ 125 (166)
+++..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98764
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=3.2e-16 Score=99.04 Aligned_cols=76 Identities=18% Similarity=0.367 Sum_probs=62.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCe--eCCeeEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVM--LGGRNIKV 118 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~--~~g~~l~v 118 (166)
.....+|||+|||+++++++|+++|.+||.|.++.++.+ ++|||||+|.+.++|++ +++.. +.|+.+.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 445689999999999999999999999999999999764 68999999999999883 45544 45999999
Q ss_pred EecccCC
Q psy2136 119 HFPHVQV 125 (166)
Q Consensus 119 ~~a~~~~ 125 (166)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9987653
No 178
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2.9e-16 Score=114.25 Aligned_cols=79 Identities=25% Similarity=0.479 Sum_probs=73.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
..+|||+|||+.+++++|+++|.+||.|..+.++.++ +.++|||||+|.+.++|++|+..|+|..+.|+.|.|.++.+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4689999999999999999999999999999999885 45799999999999999999999999999999999999864
Q ss_pred C
Q psy2136 124 Q 124 (166)
Q Consensus 124 ~ 124 (166)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 3
No 179
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1.9e-16 Score=104.74 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCee-----EE
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRN-----IK 117 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~-----l~ 117 (166)
..++|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|+.|+..|++..+.|+. ++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4589999999999999999999999999999998654 89999999999999999999999999988 77
Q ss_pred EEecccCCC
Q psy2136 118 VHFPHVQVG 126 (166)
Q Consensus 118 v~~a~~~~~ 126 (166)
|..+.+...
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 777665443
No 180
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=5.3e-16 Score=107.79 Aligned_cols=80 Identities=23% Similarity=0.423 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCee--EEEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRN--IKVH 119 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~--l~v~ 119 (166)
...++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|+..|+|..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999964 8887
Q ss_pred ec
Q psy2136 120 FP 121 (166)
Q Consensus 120 ~a 121 (166)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 181
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=103.45 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=68.3
Q ss_pred CCCCCEEEE--cCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-----CC
Q psy2136 41 SNSPLRVYV--GSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML-----GG 113 (166)
Q Consensus 41 ~~~~~~v~v--~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~-----~g 113 (166)
..+.++||| |||+.++++++|+++|.+||.|.++.++. .+|||||+|.+.++|++|+..|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 344688999 77999999999999999999999988753 268999999999999999999999988 58
Q ss_pred eeEEEEeccc
Q psy2136 114 RNIKVHFPHV 123 (166)
Q Consensus 114 ~~l~v~~a~~ 123 (166)
+.|.|.++..
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 8999999863
No 182
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.6e-16 Score=102.21 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPIT---QKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~---~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
..++|||+|||+++++++|+++|.+||.|. +.++.++.+ |+++|||||+|.+.+.|+.|+..|+ .+.|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 458999999999999999999999999999 888888776 7899999999999999999999884 3667766665
Q ss_pred ecc
Q psy2136 120 FPH 122 (166)
Q Consensus 120 ~a~ 122 (166)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 443
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=5.6e-16 Score=103.37 Aligned_cols=80 Identities=26% Similarity=0.418 Sum_probs=70.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
......++|||+|+ ++++++|+.+|.+||.|.++.+. +++|||||+|.+.+.|+.|+..|+|..+.|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999996 69999999999999999999885 46789999999999999999999999999999999
Q ss_pred EecccCCC
Q psy2136 119 HFPHVQVG 126 (166)
Q Consensus 119 ~~a~~~~~ 126 (166)
.++.+...
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99976643
No 184
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=4.1e-15 Score=99.35 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=67.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEec
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF-AFVEYDIPEAAQLSLEQMNGVMLGG--RNIKVHFP 121 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~-afv~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~a 121 (166)
..|||+||++.+++++|+.+|.+||.|.++.+... .|| |||+|.+.++|+.|+..|+|..|.| +.|+|.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35789999999999999999999999999998652 276 9999999999999999999999987 68999999
Q ss_pred ccCC
Q psy2136 122 HVQV 125 (166)
Q Consensus 122 ~~~~ 125 (166)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8664
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=98.96 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
..++|||+|||.++++++|+++|.+||.|.++.++.+ ++|||||+|.+.++|+++.. ....+.|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4589999999999999999999999999999998754 68999999999999976533 2355689999999987
Q ss_pred cCCCC
Q psy2136 123 VQVGR 127 (166)
Q Consensus 123 ~~~~~ 127 (166)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 66543
No 186
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.3e-16 Score=97.47 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=63.1
Q ss_pred EEEEcCCCCCCCHHH----HHHhcccC-CCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 46 RVYVGSISFELKEDT----IRQAFLPF-GPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 46 ~v~v~nl~~~~~~~~----l~~~f~~~-g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
.|||+|||.++++++ |+++|.+| |.|.+| ++ |+|||.|.+.++|++|++.|+|..+.|++++|.+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 499999999999987 55899999 599887 23 8999999999999999999999999999999999
Q ss_pred cccCC
Q psy2136 121 PHVQV 125 (166)
Q Consensus 121 a~~~~ 125 (166)
|+...
T Consensus 81 A~~~s 85 (96)
T 2diu_A 81 TPKNR 85 (96)
T ss_dssp SCCSC
T ss_pred cCCCc
Confidence 97654
No 187
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=4.2e-16 Score=97.67 Aligned_cols=71 Identities=28% Similarity=0.644 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccC----C-------CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPF----G-------PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML 111 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~----g-------~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 111 (166)
..++|||+|||.++++++|+++|.+| | .+.++.+..+ +|||||+|.+.++|+.|+ .|++..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 35899999999999999999999999 8 8999988643 789999999999999999 8999999
Q ss_pred CCeeEEEEe
Q psy2136 112 GGRNIKVHF 120 (166)
Q Consensus 112 ~g~~l~v~~ 120 (166)
.|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 188
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=2.4e-15 Score=97.83 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHhcccCCCeeEEEEeeCCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 43 SPLRVYVGSISF-----ELKEDTIRQAFLPFGPIKSINMSWDPIT-QKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 43 ~~~~v~v~nl~~-----~~~~~~l~~~f~~~g~i~~v~i~~~~~~-~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
+++.|+|.|+.. +-.+++|++.|++||.|.++.++.++.+ ++++|||||+|.+.++|++|+..|+|..+.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 458999999963 2367899999999999999999998654 6789999999999999999999999999999999
Q ss_pred EEEeccc
Q psy2136 117 KVHFPHV 123 (166)
Q Consensus 117 ~v~~a~~ 123 (166)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999853
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=1.4e-15 Score=106.58 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---CeeEEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG---GRNIKV 118 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~---g~~l~v 118 (166)
...++|||+|||..+++++|+++|.+||.|.++.++.++ +|+++|||||+|.+.++|..|+..|+|..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356899999999999999999999999999999999986 5889999999999999999999999998776 399999
Q ss_pred Eecc
Q psy2136 119 HFPH 122 (166)
Q Consensus 119 ~~a~ 122 (166)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 190
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=1.8e-15 Score=108.66 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEeccc
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHV 123 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 123 (166)
.++|||+|||+.+++++|+.+|.+||.|.+++++++. +|+++|||||+|.+.++|+.|+..+ +..+.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4899999999999999999999999999999999986 5889999999999999999999865 5699999999999865
Q ss_pred CC
Q psy2136 124 QV 125 (166)
Q Consensus 124 ~~ 125 (166)
..
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 53
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=2.5e-15 Score=105.56 Aligned_cols=79 Identities=22% Similarity=0.428 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 120 (166)
....++|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3456899999999999999999999999987655 45788999999999999999999999999999999999999
Q ss_pred cccC
Q psy2136 121 PHVQ 124 (166)
Q Consensus 121 a~~~ 124 (166)
+.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8754
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=1.7e-15 Score=111.74 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q psy2136 41 SNSPLRVYVGSISFEL---------KEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVML 111 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~---------~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~ 111 (166)
....++||||||+..+ ++++|+.+|.+||.|.+|.++. ++|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3456899999999998 6999999999999999999975 478999999999999999999999999
Q ss_pred ------------CCeeEEEEecccCCC
Q psy2136 112 ------------GGRNIKVHFPHVQVG 126 (166)
Q Consensus 112 ------------~g~~l~v~~a~~~~~ 126 (166)
.|+.|.|.||+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999976543
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=2.1e-14 Score=108.25 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeeEEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG-GRNIKVH 119 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l~v~ 119 (166)
....++|||+|||..+++++|+++|.+||.|.++.++.++ +|||||+|.+.++|..|+..|+|..+. |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3456899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred ecc
Q psy2136 120 FPH 122 (166)
Q Consensus 120 ~a~ 122 (166)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 985
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.5e-14 Score=91.40 Aligned_cols=82 Identities=21% Similarity=0.377 Sum_probs=69.6
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q psy2136 40 NSNSPLRVYVGSISFELK-----------EDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG 108 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~~~-----------~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~ 108 (166)
.+.+.++|+|.||..... +++|+++|.+||.|.++.+ .++ .++|||||+|.+.++|+.|+..|+|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445578999999954432 5789999999999999965 543 3799999999999999999999999
Q ss_pred CeeCCeeEEEEecccCC
Q psy2136 109 VMLGGRNIKVHFPHVQV 125 (166)
Q Consensus 109 ~~~~g~~l~v~~a~~~~ 125 (166)
..+.|+.|.|.++.+..
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999987653
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=5.8e-14 Score=100.52 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeeEEEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG-GRNIKVH 119 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l~v~ 119 (166)
.+.++|||+|||..+++++|+++|.+|| .|..+.++.+ .+|+|||+|.+.++|..|+..|+|..+. |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4468999999999999999999999999 9999998653 3789999999999999999999999999 9999999
Q ss_pred ecccC
Q psy2136 120 FPHVQ 124 (166)
Q Consensus 120 ~a~~~ 124 (166)
|++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98754
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=1.1e-13 Score=101.64 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCC-CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CeeEEEE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG-GRNIKVH 119 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~-g~~l~v~ 119 (166)
.+.++|||+|||..+++++|+++|.+|| .|..+.++.+ .+|+|||+|.+.++|..|+..|+|..+. |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999998653 3689999999999999999999999999 9999999
Q ss_pred ecccC
Q psy2136 120 FPHVQ 124 (166)
Q Consensus 120 ~a~~~ 124 (166)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98754
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=1.9e-13 Score=102.15 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeeC---CeeEEE
Q psy2136 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG-VMLG---GRNIKV 118 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~-~~~~---g~~l~v 118 (166)
++++|||+|||..+++++|+++|..||.|..+.++.+ .+|+++|||||+|.+.++|..|+..|++ ..+. ++++.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3579999999999999999999999999999999999 4899999999999999999999999954 4444 899999
Q ss_pred EecccCC
Q psy2136 119 HFPHVQV 125 (166)
Q Consensus 119 ~~a~~~~ 125 (166)
.++.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987553
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.51 E-value=4.3e-14 Score=102.34 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccCCCe--eEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe----e
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPI--KSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGR----N 115 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i--~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~----~ 115 (166)
.+.++|||+|||+.+++++|+++|.+||.| .+++++.++ ++++|+|||+|.+.++|..|+..|||..+.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 346799999999999999999999999998 889988775 55679999999999999999999999999875 4
Q ss_pred EEEEec
Q psy2136 116 IKVHFP 121 (166)
Q Consensus 116 l~v~~a 121 (166)
+.|.++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 555543
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=1e-13 Score=90.12 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=68.8
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHhcccCCCeeEEEEeeCCCC--CCcceEEEEEeCCHHHHHHHHHHhCCCe
Q psy2136 43 SPLRVYVGSI--SFELK--------EDTIRQAFLPFGPIKSINMSWDPIT--QKHKGFAFVEYDIPEAAQLSLEQMNGVM 110 (166)
Q Consensus 43 ~~~~v~v~nl--~~~~~--------~~~l~~~f~~~g~i~~v~i~~~~~~--~~~~g~afv~f~~~~~a~~ai~~l~~~~ 110 (166)
+++.|.+.|+ +.... +++|++.|++||.|.++.+++++.+ ++++|++||+|.+.++|++|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578899998 33333 2689999999999999999988754 3678999999999999999999999999
Q ss_pred eCCeeEEEEecc
Q psy2136 111 LGGRNIKVHFPH 122 (166)
Q Consensus 111 ~~g~~l~v~~a~ 122 (166)
+.|+.|+|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999874
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.7e-14 Score=93.59 Aligned_cols=72 Identities=13% Similarity=0.294 Sum_probs=62.6
Q ss_pred EcCCCCCCCHHHHHHhc------------ccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 49 VGSISFELKEDTIRQAF------------LPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 49 v~nl~~~~~~~~l~~~f------------~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
+.||+..+++++|++.| ++||.|.++.+++++. ++++|||||+|.+.++|++|+..|+|..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45667777777666555 9999999999998764 7889999999999999999999999999999999
Q ss_pred EEEec
Q psy2136 117 KVHFP 121 (166)
Q Consensus 117 ~v~~a 121 (166)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=3.7e-13 Score=89.14 Aligned_cols=80 Identities=14% Similarity=0.255 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHhcccCCCeeEEEEeeCCC----CCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q psy2136 43 SPLRVYVGSISF--EL---KEDTIRQAFLPFGPIKSINMSWDPI----TQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG 113 (166)
Q Consensus 43 ~~~~v~v~nl~~--~~---~~~~l~~~f~~~g~i~~v~i~~~~~----~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 113 (166)
+++.|+|.|+-. .+ -+++|++.|.+||.|.++.++.++. +++++|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468999999842 22 2578999999999999999998864 35678999999999999999999999999999
Q ss_pred eeEEEEecc
Q psy2136 114 RNIKVHFPH 122 (166)
Q Consensus 114 ~~l~v~~a~ 122 (166)
+.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.3e-12 Score=82.11 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=57.5
Q ss_pred CCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccCCC
Q psy2136 54 FELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVG 126 (166)
Q Consensus 54 ~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~ 126 (166)
..+++++|+.+|.+||.|.++.++ ++++|||||+|.+.++|+.|+..++ .+.|+.|+|.|++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 458999999999999999999987 3678999999999999999999744 46799999999876643
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.35 E-value=3.4e-12 Score=98.80 Aligned_cols=77 Identities=16% Similarity=0.290 Sum_probs=64.7
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC---Ce
Q psy2136 40 NSNSPLRVYVGS--ISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG---GR 114 (166)
Q Consensus 40 ~~~~~~~v~v~n--l~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~---g~ 114 (166)
...++++||||| |+..+++++|+++|.+||.|.++.+.. ++|||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345568999999 578899999999999999999887743 4789999999999999999999998874 44
Q ss_pred --eEEEEecc
Q psy2136 115 --NIKVHFPH 122 (166)
Q Consensus 115 --~l~v~~a~ 122 (166)
.+.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56777763
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=1.6e-11 Score=80.75 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=63.7
Q ss_pred CCCEEEEcCCCCCCC----------HHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q psy2136 43 SPLRVYVGSISFELK----------EDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLG 112 (166)
Q Consensus 43 ~~~~v~v~nl~~~~~----------~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~ 112 (166)
+++.|.+.|+=.... +++|++.|.+||.|.++.+.++. .+|++||+|.+.++|++|+..|||..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356788888743221 14788999999999999986652 4899999999999999999999999999
Q ss_pred CeeEEEEecc
Q psy2136 113 GRNIKVHFPH 122 (166)
Q Consensus 113 g~~l~v~~a~ 122 (166)
|+.|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999974
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-10 Score=72.22 Aligned_cols=74 Identities=24% Similarity=0.229 Sum_probs=61.7
Q ss_pred CCEEEEcCCCC----CCCH----HHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q psy2136 44 PLRVYVGSISF----ELKE----DTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRN 115 (166)
Q Consensus 44 ~~~v~v~nl~~----~~~~----~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~ 115 (166)
..+|+|.-.+. ++.. .+|.+.|.+||.+..+++..++ +||+|.+.+.|.+|+. |+|..+.|+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 35788876652 2323 5688999999999999998763 8999999999999998 9999999999
Q ss_pred EEEEecccCCC
Q psy2136 116 IKVHFPHVQVG 126 (166)
Q Consensus 116 l~v~~a~~~~~ 126 (166)
|+|.++++...
T Consensus 78 LkV~lkt~dW~ 88 (91)
T 2dnr_A 78 ITIALKSPSGP 88 (91)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeCCCCcc
Confidence 99999886654
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.1e-10 Score=75.86 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=66.3
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CCeeCCee
Q psy2136 40 NSNSPLRVYVGSISFE-LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI-PEAAQLSLEQMN--GVMLGGRN 115 (166)
Q Consensus 40 ~~~~~~~v~v~nl~~~-~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~-~~~a~~ai~~l~--~~~~~g~~ 115 (166)
....++.|||+||+.. ++.++|+++|.+||.|..|.+..+.. .|||.|.+ ...|..|+..++ +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4456789999999999 99999999999999999999987643 69999999 899999999994 68888888
Q ss_pred EEEEec
Q psy2136 116 IKVHFP 121 (166)
Q Consensus 116 l~v~~a 121 (166)
+.++..
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 887664
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.2e-09 Score=67.33 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=59.4
Q ss_pred CCEEEEcCCCCC------CCH---HHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q psy2136 44 PLRVYVGSISFE------LKE---DTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGR 114 (166)
Q Consensus 44 ~~~v~v~nl~~~------~~~---~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~ 114 (166)
..+|+|.-++.. .++ .+|.+.|.+||.+..+++..++ +||+|.+.+.|.+|+. |+|..+.|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 368889877642 332 4688999999999999998763 9999999999999998 999999999
Q ss_pred eEEEEecc
Q psy2136 115 NIKVHFPH 122 (166)
Q Consensus 115 ~l~v~~a~ 122 (166)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=4.1e-09 Score=76.69 Aligned_cols=66 Identities=17% Similarity=0.295 Sum_probs=58.9
Q ss_pred CHHHHHHhcccCCCeeEEEEeeCC----CCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q psy2136 57 KEDTIRQAFLPFGPIKSINMSWDP----ITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH 122 (166)
Q Consensus 57 ~~~~l~~~f~~~g~i~~v~i~~~~----~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 122 (166)
.+++|+..|.+||.|.++.++.+. .++.++|++||+|.+.++|++|+..|+|..+.|+.|.+.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 446899999999999999998554 345889999999999999999999999999999999999874
No 209
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.66 E-value=4.2e-09 Score=72.10 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=57.1
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCeeEEEEecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCC
Q psy2136 83 QKHKGFAFVEYDIPEAAQLSLEQM-NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLT 161 (166)
Q Consensus 83 ~~~~g~afv~f~~~~~a~~ai~~l-~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 161 (166)
++-+|+++++|.+.+.|++|+..+ +|..+.| .+.+.++.............. ............+|||+|||+++|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHH--HHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCC--CCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccccc--ccccccCCCCCCEEEEeCCCCCCC
Confidence 456899999999999999999999 9999999 999988764321110000000 000111223468999999999999
Q ss_pred ccccC
Q psy2136 162 EEDIK 166 (166)
Q Consensus 162 ee~Lr 166 (166)
+++|+
T Consensus 87 ~~~l~ 91 (150)
T 2i2y_A 87 KTELE 91 (150)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 99984
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.66 E-value=4.2e-08 Score=67.52 Aligned_cols=87 Identities=7% Similarity=-0.034 Sum_probs=50.2
Q ss_pred EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccCCCCCCCCCcccchhhhhhHhhhccCcEE
Q psy2136 73 SINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIY 152 (166)
Q Consensus 73 ~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (166)
++.++++. ++.+|||||+|.+.+.|++|+..+++....+....+............... ...........+||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~ 74 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHH-----HHHHMDVEGMTSLK 74 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCC-----SSCCCCCCBCCEEE
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccc-----cccccCCCCCCEEE
Confidence 45666664 368999999999999999999887753222222222111100000000000 00000112358999
Q ss_pred EcCCCcCCCccccC
Q psy2136 153 VASIHPDLTEEDIK 166 (166)
Q Consensus 153 V~nl~~~~tee~Lr 166 (166)
|+|||+++|+++|+
T Consensus 75 v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 75 VDNLTYRTSPDTLR 88 (158)
T ss_dssp EESCCTTCCHHHHH
T ss_pred EeCCCCCCCHHHHH
Confidence 99999999999984
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=3.9e-07 Score=58.43 Aligned_cols=74 Identities=18% Similarity=0.082 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhcccC-----CCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q psy2136 42 NSPLRVYVGSISFELKEDTIRQAFLPF-----GPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNI 116 (166)
Q Consensus 42 ~~~~~v~v~nl~~~~~~~~l~~~f~~~-----g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l 116 (166)
+..+++-+-|||..++...|+.+.+.+ |.+..+.+..+ -+.|+|+|.+...|-+|.-.|+|..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 345788899999999999999999999 99999998776 4589999999999999998899999999999
Q ss_pred EEEec
Q psy2136 117 KVHFP 121 (166)
Q Consensus 117 ~v~~a 121 (166)
++.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98643
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=4.6e-05 Score=48.31 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=69.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhccc-----CCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLP-----FGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~-----~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
..+|.|.|||+.++++.|.-+|+. -|.+..+.... +-|+|.|.+...|++.+.. ..+.+.+.+|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 478999999999999999999986 25788776632 4789999999999999983 478888988888
Q ss_pred EecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCc
Q psy2136 119 HFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTE 162 (166)
Q Consensus 119 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te 162 (166)
...-+. ...+|++.+|++.++.
T Consensus 79 ~P~~~~----------------------~~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 79 RPAPPR----------------------APARLLLQGLPPGTSG 100 (104)
T ss_dssp EECCCC----------------------CCCCCCCCSCCCCCCC
T ss_pred EcCCCC----------------------CcceEeeecCCCCCCC
Confidence 553211 1258888889888764
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.87 E-value=9.3e-05 Score=46.41 Aligned_cols=60 Identities=27% Similarity=0.351 Sum_probs=49.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q psy2136 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107 (166)
Q Consensus 39 ~~~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 107 (166)
..+...+.++| ++|+.+...||.++|..||.+ .|+|+-|. -||+.|.+.+.|..|+..+.
T Consensus 11 ~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 11 LQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34444567777 999999999999999999944 58888764 89999999999999998763
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=0.00015 Score=46.10 Aligned_cols=75 Identities=9% Similarity=0.094 Sum_probs=62.3
Q ss_pred CCEEEEcCCCCCC-CH----HHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q psy2136 44 PLRVYVGSISFEL-KE----DTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118 (166)
Q Consensus 44 ~~~v~v~nl~~~~-~~----~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v 118 (166)
+.+++|.||+..+ .. +.++++|..|+++....+.+.- .-..|.|.+.++|.+|-..|++..+.|++++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998754 22 4678999999999887776542 25689999999999999999999999999999
Q ss_pred EecccC
Q psy2136 119 HFPHVQ 124 (166)
Q Consensus 119 ~~a~~~ 124 (166)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998744
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.71 E-value=0.00037 Score=43.39 Aligned_cols=69 Identities=10% Similarity=0.184 Sum_probs=57.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK--HKGFAFVEYDIPEAAQLSLEQMNGVMLGG 113 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~--~~g~afv~f~~~~~a~~ai~~l~~~~~~g 113 (166)
..|.|.+||+.++++++.+.+.....+....+..++.+.+ .-..||+.|.+.+++......++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4688999999999999999999888777677776654443 45789999999999999999999988764
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.46 E-value=0.00029 Score=44.27 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=46.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMN 107 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 107 (166)
+.++| ++|+.+...+|.++|..|| -..|+|+-|. -||+.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45566 9999999999999999999 5568888764 89999999999999999765
No 217
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.19 E-value=4.6e-05 Score=51.02 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=19.2
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 88 FAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 88 ~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
+.|.+|.+...+..|+..++|....|+. .+.+. ++ . .......+|||+|||+++|+++|+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~-----~~----~---------~~~~~~~~l~V~nLp~~~te~~L~ 65 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYG-----RP----P---------PDVEGMTSLKVDNLTYRTSPDTLR 65 (135)
T ss_dssp ------------------------------CCSC-----CS----C---------SSGGGCCCEEEECCCSSCHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcC-----CC----C---------CCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6778888888999999988876555432 11111 10 0 112235899999999999999984
No 218
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.03 E-value=8.1e-05 Score=51.38 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=18.1
Q ss_pred EEeCCHHHHHHHHHHhCCCeeC--CeeEEEEecccCCCCCCCCCc--ccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 91 VEYDIPEAAQLSLEQMNGVMLG--GRNIKVHFPHVQVGRPSNMPQ--AQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 91 v~f~~~~~a~~ai~~l~~~~~~--g~~l~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
.+|.+.++|+.++..+++.... |+.....++............ ................+|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 5788888999999888876554 555555543221100000000 000000111112335689999999999999984
No 219
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.93 E-value=0.0046 Score=40.27 Aligned_cols=72 Identities=21% Similarity=0.189 Sum_probs=56.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC-eeEEEE
Q psy2136 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG-RNIKVH 119 (166)
Q Consensus 41 ~~~~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g-~~l~v~ 119 (166)
....+-|.|-++|+.. ...+...|.+||.|.+.... ....+-++.|.+..+|++|+. .||..+.| .-|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3345778888999885 56688899999999887752 124599999999999999998 49999874 556665
Q ss_pred e
Q psy2136 120 F 120 (166)
Q Consensus 120 ~ 120 (166)
.
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 4
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.91 E-value=0.006 Score=38.24 Aligned_cols=69 Identities=10% Similarity=0.196 Sum_probs=50.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCC--cceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK--HKGFAFVEYDIPEAAQLSLEQMNGVMLGG 113 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~--~~g~afv~f~~~~~a~~ai~~l~~~~~~g 113 (166)
-.|.|..||+.++++++.+.+...-.+....+...+.+.+ .-..||+.|.+.++.......++|..+.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4688999999999998877776554433233333332222 34679999999999999999999987764
No 221
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.50 E-value=0.00012 Score=58.31 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=17.6
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+.+|+++|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~ 120 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLR 120 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999984
No 222
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.35 E-value=0.0022 Score=51.34 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=41.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHH
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~ 104 (166)
++|||. .|...++.+|.++|.+||+|.++.+..++ .-||.|+|.+.++++.++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 899997 79999999999999999999998887653 3699999999888886654
No 223
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.18 E-value=0.0013 Score=41.41 Aligned_cols=19 Identities=11% Similarity=0.382 Sum_probs=17.3
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++|+++|+
T Consensus 19 gt~lfV~nLp~~~te~~L~ 37 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELR 37 (99)
T ss_dssp CSEEEEESCCTTCCHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHH
Confidence 4789999999999999985
No 224
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=95.87 E-value=0.0021 Score=40.67 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=18.4
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
.+.++|||+|||+++|+++|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~ 39 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLV 39 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHH
Confidence 346899999999999999984
No 225
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.84 E-value=0.0022 Score=41.89 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.9
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
+.++|||+|||+++||++|+
T Consensus 30 ps~~LfVgNLp~~vte~dL~ 49 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVI 49 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999985
No 226
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.79 E-value=0.0062 Score=38.60 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.5
Q ss_pred hhhccCcEEEcCCCcCCCccccC
Q psy2136 144 EAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 144 ~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
......+|||+|||.++++++|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~ 43 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMR 43 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHH
Confidence 34457899999999999999984
No 227
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=95.69 E-value=0.0025 Score=42.79 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=17.9
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
....+|||+|||+++||+||+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~ 64 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIY 64 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHH
Confidence 345799999999999999985
No 228
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=95.65 E-value=0.0026 Score=38.56 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++++++|+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~ 29 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLK 29 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 45899999999999999984
No 229
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.49 E-value=0.0025 Score=41.18 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=18.3
Q ss_pred hccCcEEEcCCCcC-CCccccC
Q psy2136 146 KLYNRIYVASIHPD-LTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~-~tee~Lr 166 (166)
.+..+|||+|||++ +|+++|+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~ 44 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVL 44 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHH
T ss_pred CCCCEEEEeCCCCccCCHHHHH
Confidence 34689999999998 9999985
No 230
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.49 E-value=0.0092 Score=39.08 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=18.6
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
....+|||+|||+++|++||+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~ 41 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVV 41 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHH
Confidence 446899999999999999985
No 231
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.0064 Score=37.91 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=17.9
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||.++++++|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~ 45 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLI 45 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHH
Confidence 36799999999999999984
No 232
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.34 E-value=0.021 Score=37.71 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=52.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeE-EEEeeC--------CCCC-----CcceEEEEEeCCHHHHHHHHHHhCCCe
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKS-INMSWD--------PITQ-----KHKGFAFVEYDIPEAAQLSLEQMNGVM 110 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~-v~i~~~--------~~~~-----~~~g~afv~f~~~~~a~~ai~~l~~~~ 110 (166)
..|.|-+.|+... ..+.+.|++||.|.. .....+ +.+. .....-.|.|.+..+|++|+. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4566778877654 457789999999865 211110 0000 134588999999999999998 59999
Q ss_pred eCCeeEEEEec
Q psy2136 111 LGGRNIKVHFP 121 (166)
Q Consensus 111 ~~g~~l~v~~a 121 (166)
+.|.-|.|.+-
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987777654
No 233
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.31 E-value=0.0047 Score=38.45 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=17.9
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
..++|||+|||+++|+++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~ 33 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIE 33 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHH
T ss_pred CcCEEEEeCCCCCCCHHHHH
Confidence 45899999999999999984
No 234
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=95.29 E-value=0.0032 Score=40.52 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=17.3
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++++++|+
T Consensus 28 ~~~l~VgnLp~~~te~dL~ 46 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLK 46 (111)
T ss_dssp CEEEEEECSSCCCCHHHHH
T ss_pred CCEEEEECCCCCCCHHHHH
Confidence 4799999999999999985
No 235
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.29 E-value=0.0044 Score=39.62 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
..++|||+|||.++++++|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~ 43 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLE 43 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35899999999999999984
No 236
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.27 E-value=0.0049 Score=38.19 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=17.7
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
+..+|||+|||+++|+++|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~ 35 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALA 35 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999984
No 237
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.22 E-value=0.004 Score=37.48 Aligned_cols=19 Identities=26% Similarity=0.600 Sum_probs=17.3
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++++++|+
T Consensus 12 ~~~l~V~~l~~~~t~~~l~ 30 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLR 30 (85)
T ss_dssp CCCEEEECCTTTSCHHHHH
T ss_pred ccEEEEcCCCCCCCHHHHH
Confidence 5799999999999999984
No 238
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=95.16 E-value=0.0054 Score=40.43 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++||++|+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~ 60 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIV 60 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999985
No 239
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.13 E-value=0.0056 Score=37.95 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.4
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++|+++|+
T Consensus 19 ~~~l~V~nL~~~~t~~~l~ 37 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLK 37 (97)
T ss_dssp CCEEEEECCCTTCCHHHHH
T ss_pred CCEEEEeCCCCcCcHHHHH
Confidence 5799999999999999984
No 240
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.10 E-value=0.0058 Score=38.17 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=16.9
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
...++|||+|||.++++++|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~ 37 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIK 37 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHH
Confidence 346899999999999999984
No 241
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.08 E-value=0.0047 Score=38.10 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=17.7
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++++++|+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~ 34 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELK 34 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999984
No 242
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.02 E-value=0.0058 Score=39.03 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
+..+|||+|||+++|+++|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~ 43 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLV 43 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 45899999999999999984
No 243
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=95.00 E-value=0.0061 Score=38.80 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=16.9
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
....+|||+|||+++|+++|+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~ 43 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLR 43 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHH
Confidence 446899999999999999984
No 244
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=94.99 E-value=0.0046 Score=38.60 Aligned_cols=19 Identities=11% Similarity=0.466 Sum_probs=17.2
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++|+++|+
T Consensus 17 ~~~l~V~nLp~~~t~~~l~ 35 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELK 35 (101)
T ss_dssp SEEEEEECCCTTSCHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHH
Confidence 4799999999999999984
No 245
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.96 E-value=0.0066 Score=38.46 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++|+++|+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~ 40 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIE 40 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35899999999999999984
No 246
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.95 E-value=0.0067 Score=37.71 Aligned_cols=20 Identities=35% Similarity=0.821 Sum_probs=17.7
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++|+++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~ 33 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMR 33 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 34799999999999999984
No 247
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.95 E-value=0.0067 Score=37.19 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.7
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++++++|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~ 34 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLY 34 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHH
Confidence 35799999999999999984
No 248
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=94.94 E-value=0.0052 Score=37.79 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=17.3
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++|+++|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~ 33 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEIL 33 (95)
T ss_dssp CEEEEEECCCTTCCHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHH
Confidence 4799999999999999984
No 249
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.90 E-value=0.0069 Score=39.40 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++|+++|+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~ 43 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVI 43 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHH
Confidence 35799999999999999984
No 250
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.87 E-value=0.0075 Score=37.51 Aligned_cols=19 Identities=11% Similarity=0.443 Sum_probs=17.3
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++|+++|+
T Consensus 17 ~~~l~v~nlp~~~t~~~l~ 35 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELE 35 (100)
T ss_dssp CSCEEEESCCTTCCHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHH
Confidence 4799999999999999984
No 251
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=94.87 E-value=0.025 Score=39.82 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHh--CCCeeCCeeEEEEecccCCCCCCCCCcccchhhhhhHhhhccCcEEEcCCCcCCCccccC
Q psy2136 95 IPEAAQLSLEQM--NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 95 ~~~~a~~ai~~l--~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~Lr 166 (166)
+...+..|+... ..+.+.+....|...... +.. .. ...........+|||+|||+++|+++|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~---p~p--~~----~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 127 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSK---PLP--EV----TDEYKNDVKNRSVYIKGFPTDATLDDIK 127 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTS---CCC--CC----CHHHHHHHHHTEEEEECCCTTCCHHHHH
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccC---CCc--cc----chhhhhccccCEEEecCCCCcCCHHHHH
Confidence 567778888876 556666655555544111 110 00 0011122345899999999999999884
No 252
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=94.85 E-value=0.0067 Score=38.59 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=18.4
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
....+|||+|||+++|+++|+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~ 49 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELN 49 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHH
Confidence 346899999999999999984
No 253
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=94.81 E-value=0.0047 Score=38.92 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=18.2
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
....+|||+|||+.+|+++|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~ 47 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQ 47 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHH
Confidence 346799999999999999884
No 254
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=94.80 E-value=0.0081 Score=38.39 Aligned_cols=20 Identities=5% Similarity=0.280 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++++++|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~ 43 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLL 43 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHH
Confidence 35799999999999999984
No 255
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=94.80 E-value=0.0062 Score=40.65 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=17.4
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++|++||+
T Consensus 44 ~~~lfVgnLp~~~te~dL~ 62 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQ 62 (136)
T ss_dssp TCEEEEESCCTTCCHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHH
Confidence 5799999999999999985
No 256
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=94.78 E-value=0.0065 Score=37.35 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=17.7
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++++++|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~ 34 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILY 34 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHH
Confidence 35799999999999999984
No 257
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.73 E-value=0.0072 Score=37.07 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=17.3
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++++++|+
T Consensus 15 ~~~l~v~nlp~~~t~~~l~ 33 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLR 33 (95)
T ss_dssp GGCEEEESCCSSCCHHHHH
T ss_pred CCEEEEECCCCCCCHHHHH
Confidence 5799999999999999984
No 258
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.70 E-value=0.0059 Score=37.66 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=17.3
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++++++|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~ 33 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLD 33 (96)
T ss_dssp CCCEEEEEECSSSCHHHHH
T ss_pred CCEEEEEcCCCCCCHHHHH
Confidence 4799999999999999984
No 259
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=94.62 E-value=0.0093 Score=37.08 Aligned_cols=21 Identities=14% Similarity=0.528 Sum_probs=18.1
Q ss_pred hccCcEEEcCCCc-CCCccccC
Q psy2136 146 KLYNRIYVASIHP-DLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~-~~tee~Lr 166 (166)
....+|||+|||+ ++++++|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~ 41 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLF 41 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHH
Confidence 3468999999998 99999984
No 260
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.57 E-value=0.0086 Score=38.07 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=17.9
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||.++++++|+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~ 47 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLR 47 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHH
T ss_pred CCCEEEEECCCCcCCHHHHH
Confidence 45899999999999999984
No 261
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.56 E-value=0.0076 Score=37.28 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=17.2
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++++++|+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~ 33 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEIL 33 (98)
T ss_dssp SEEEEEESCCTTCCHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHH
Confidence 4799999999999999984
No 262
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=94.56 E-value=0.012 Score=38.08 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=18.3
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
....+|||+|||.++|+++|+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~ 54 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLE 54 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHH
Confidence 346899999999999999984
No 263
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.50 E-value=0.0087 Score=38.31 Aligned_cols=20 Identities=15% Similarity=0.572 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++|+++|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~ 45 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLR 45 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35899999999999999984
No 264
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=94.37 E-value=0.011 Score=38.95 Aligned_cols=20 Identities=15% Similarity=0.487 Sum_probs=17.3
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
+..+|||+|||+.+++++||
T Consensus 28 p~~~LfV~nL~~~~~e~~L~ 47 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQ 47 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999864
No 265
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=94.34 E-value=0.0057 Score=38.47 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=17.2
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||+++++++|+
T Consensus 23 ~~~l~V~nlp~~~t~~~l~ 41 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIH 41 (106)
T ss_dssp BEEEEEECCCTTCCHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHH
Confidence 4789999999999999984
No 266
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=94.34 E-value=0.0088 Score=38.38 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++++++|+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~ 58 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLA 58 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999984
No 267
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=94.25 E-value=0.011 Score=40.23 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.9
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++|+++|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~ 73 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLI 73 (156)
T ss_dssp --CEEEEECCCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999985
No 268
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.17 E-value=0.013 Score=37.31 Aligned_cols=20 Identities=10% Similarity=0.403 Sum_probs=17.7
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++|+++|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~ 43 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELE 43 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999984
No 269
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=94.17 E-value=0.0065 Score=38.63 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.6
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++++++|+
T Consensus 25 ~~~~l~V~nLp~~~te~~l~ 44 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLR 44 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999984
No 270
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=94.14 E-value=0.009 Score=39.79 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
+..+|||+|||+++|+++|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~ 63 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLK 63 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35799999999999999984
No 271
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=94.07 E-value=0.011 Score=37.31 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=17.2
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+|||.++|+++|+
T Consensus 26 ~~~l~V~nlp~~~t~~~l~ 44 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQ 44 (110)
T ss_dssp BEEEEEESCCTTCCHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHH
Confidence 5799999999999999884
No 272
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=94.06 E-value=0.015 Score=36.80 Aligned_cols=19 Identities=11% Similarity=0.580 Sum_probs=17.2
Q ss_pred cCcEEEcCCCcC-CCccccC
Q psy2136 148 YNRIYVASIHPD-LTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~-~tee~Lr 166 (166)
..+|||+|||++ +++++|+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~ 46 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVE 46 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHH
Confidence 479999999999 9999984
No 273
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=93.73 E-value=0.018 Score=38.05 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=18.2
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
...++|||+|||.++++++|+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~ 60 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLR 60 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHH
Confidence 346899999999999999984
No 274
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=93.69 E-value=0.018 Score=37.88 Aligned_cols=20 Identities=10% Similarity=0.338 Sum_probs=18.0
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++++++|+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~ 81 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLH 81 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHH
T ss_pred CCcEEEEEeCCCCCCHHHHH
Confidence 46899999999999999984
No 275
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=93.38 E-value=0.02 Score=38.61 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=17.9
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+|||+++|+++|+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~ 57 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIY 57 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 46899999999999999984
No 276
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=93.35 E-value=0.018 Score=37.26 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.1
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
....+|||+|||+++++++|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~ 53 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQ 53 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHH
Confidence 345799999999999999984
No 277
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=93.26 E-value=0.015 Score=38.18 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=17.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
+..+|||+|||+++++++|+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~ 64 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLR 64 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHH
Confidence 35899999999999999984
No 278
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=92.74 E-value=0.028 Score=40.68 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.8
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
...+|||+||++++||++|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~ 86 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLT 86 (229)
T ss_dssp --CEEEEESCCTTCCHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHH
Confidence 45799999999999999985
No 279
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.48 E-value=0.54 Score=38.06 Aligned_cols=56 Identities=27% Similarity=0.272 Sum_probs=45.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q psy2136 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNG 108 (166)
Q Consensus 44 ~~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~ 108 (166)
...++|+ +|..+...+|.+.|+.||. ..|+++-+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4566676 8999999999999999994 45666544 3799999999999999998854
No 280
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.43 E-value=0.025 Score=36.50 Aligned_cols=21 Identities=5% Similarity=0.131 Sum_probs=18.1
Q ss_pred hccCcEEE--cCCCcCCCccccC
Q psy2136 146 KLYNRIYV--ASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V--~nl~~~~tee~Lr 166 (166)
.+.++||| |||++++++++|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~ 45 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLL 45 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHH
T ss_pred CCCCEEEEECCCCCCCCCHHHHH
Confidence 34689999 7799999999985
No 281
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=91.25 E-value=0.048 Score=37.84 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.2
Q ss_pred hccCcEEEcCCCcCCCccccC
Q psy2136 146 KLYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~tee~Lr 166 (166)
....+|||+|||+.+++++|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~ 106 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQ 106 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHH
Confidence 346799999999999999984
No 282
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=90.13 E-value=0.075 Score=35.09 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.4
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
.-.+|||+||++.+|+++|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~ 46 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLH 46 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHH
T ss_pred ceEEEEECCCCCCCCHHHHH
Confidence 34789999999999999984
No 283
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=89.47 E-value=0.091 Score=36.12 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.9
Q ss_pred cCcEEEcCCCcCCCccccC
Q psy2136 148 YNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 148 ~~~l~V~nl~~~~tee~Lr 166 (166)
..+|||+||++.+|+++|+
T Consensus 46 vl~l~VgNL~~~vted~L~ 64 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLH 64 (164)
T ss_dssp EEEEEECSCCSCCCHHHHH
T ss_pred eEEEEEeCcCCCCCHHHHH
Confidence 3689999999999999984
No 284
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=89.15 E-value=0.099 Score=34.16 Aligned_cols=20 Identities=5% Similarity=-0.132 Sum_probs=17.5
Q ss_pred ccCcEEEcCCCcCCCccccC
Q psy2136 147 LYNRIYVASIHPDLTEEDIK 166 (166)
Q Consensus 147 ~~~~l~V~nl~~~~tee~Lr 166 (166)
....|||+||++.+|+++|+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~ 43 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLY 43 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHH
T ss_pred cEEEEEEcCcCCCCCHHHHH
Confidence 35789999999999999884
No 285
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=83.38 E-value=0.18 Score=36.82 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=17.3
Q ss_pred hccCcEEEcCCCcCC---------CccccC
Q psy2136 146 KLYNRIYVASIHPDL---------TEEDIK 166 (166)
Q Consensus 146 ~~~~~l~V~nl~~~~---------tee~Lr 166 (166)
....+||||||+..+ +|++|+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~ 161 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIR 161 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHH
Confidence 346899999999998 688774
No 286
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=78.29 E-value=5.1 Score=23.08 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=39.4
Q ss_pred EEEEcCC-CCCCCHHHHHHhcccCC-----CeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy2136 46 RVYVGSI-SFELKEDTIRQAFLPFG-----PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119 (166)
Q Consensus 46 ~v~v~nl-~~~~~~~~l~~~f~~~g-----~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 119 (166)
++||..= ...+...+|..++..-+ .|=.+.+. ..|.||+... ..+..++..|++..+.|++++++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 3555322 23456667777776444 33445553 2388999854 55778888899999999998887
Q ss_pred ec
Q psy2136 120 FP 121 (166)
Q Consensus 120 ~a 121 (166)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 287
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=35.83 E-value=99 Score=21.10 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=27.4
Q ss_pred CCHHHHHHhc--ccCCCeeEEEEeeCCCCCCcceEEEEEeCCH
Q psy2136 56 LKEDTIRQAF--LPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96 (166)
Q Consensus 56 ~~~~~l~~~f--~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~ 96 (166)
.....|.+.| ..|.++. +....++ ..+.|++.|.|.+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 3456788877 8998765 5555654 34789999999753
No 288
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=24.49 E-value=92 Score=24.04 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=37.8
Q ss_pred EEEcCCCCCC----CHHHHHHhcccCCCeeEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q psy2136 47 VYVGSISFEL----KEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG 113 (166)
Q Consensus 47 v~v~nl~~~~----~~~~l~~~f~~~g~i~~v~i~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~~~~~~g 113 (166)
-+|||+..-. ....+.++..+||+|..+.+ | +.-.|...+.+.++.++.. ++..+.+
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~------g---~~~~vvv~~p~~~k~il~~-~~~~f~~ 77 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRM------G---TKTTVIVGHHQLAKEVLIK-KGKDFSG 77 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEE------T---TEEEEEECSHHHHHHHHTT-TTTTTBB
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEe------C---CCCEEEECCHHHHHHHHHh-CcHhhCC
Confidence 3588876432 23567778889999987776 1 2456777888888888764 3333433
No 289
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.83 E-value=77 Score=23.06 Aligned_cols=33 Identities=6% Similarity=0.182 Sum_probs=25.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhcccCCCeeEEEEee
Q psy2136 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSW 78 (166)
Q Consensus 45 ~~v~v~nl~~~~~~~~l~~~f~~~g~i~~v~i~~ 78 (166)
.-+.|+|+|++++..-|..++.. +.+....++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 45779999999999999998877 6666555544
Done!