Your job contains 1 sequence.
>psy2136
TCCIVVTTTCCIVVTKCTYPFLSTPLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDT
IRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF
PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2136
(166 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 508 1.3e-53 2
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 457 2.8e-43 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 451 1.2e-42 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 451 1.2e-42 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 451 1.2e-42 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 451 1.2e-42 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 451 1.2e-42 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 451 1.2e-42 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 451 1.2e-42 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 451 1.2e-42 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 451 1.2e-42 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 451 1.2e-42 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 451 1.2e-42 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 451 1.2e-42 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 451 1.2e-42 1
UNIPROTKB|E9PN18 - symbol:PUF60 "Poly(U)-binding-splicing... 451 1.2e-42 1
WB|WBGene00004389 - symbol:rnp-6 species:6239 "Caenorhabd... 416 3.4e-38 1
UNIPROTKB|E9PMU7 - symbol:PUF60 "Poly(U)-binding-splicing... 388 5.7e-36 1
UNIPROTKB|H0YCP8 - symbol:PUF60 "Poly(U)-binding-splicing... 296 3.2e-26 1
UNIPROTKB|E9PL19 - symbol:PUF60 "Poly(U)-binding-splicing... 274 6.8e-24 1
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding... 183 9.0e-15 2
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 177 5.2e-13 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 177 7.1e-13 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 177 1.1e-12 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 177 1.1e-12 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 177 1.1e-12 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 177 1.1e-12 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 177 1.1e-12 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 177 1.1e-12 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 177 1.1e-12 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 177 1.1e-12 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 174 1.4e-12 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 175 1.8e-12 1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 165 2.4e-12 1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 165 2.4e-12 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 174 2.4e-12 1
FB|FBgn0028382 - symbol:cyp33 "cyclophilin-33" species:72... 167 3.2e-12 1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 165 3.3e-12 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 171 3.5e-12 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 172 4.7e-12 1
UNIPROTKB|E9PK21 - symbol:PPIE "Peptidyl-prolyl cis-trans... 158 1.3e-11 1
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 165 1.6e-11 1
UNIPROTKB|E1BUM0 - symbol:PPIE "Uncharacterized protein" ... 161 1.6e-11 1
RGD|1311411 - symbol:Ppie "peptidylprolyl isomerase E (cy... 158 1.6e-11 1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 163 2.4e-11 1
UNIPROTKB|A4FV72 - symbol:PPIE "Peptidyl-prolyl cis-trans... 158 3.4e-11 1
UNIPROTKB|G3MZS9 - symbol:PPIE "Peptidyl-prolyl cis-trans... 158 3.4e-11 1
UNIPROTKB|E2QVB5 - symbol:PPIE "Uncharacterized protein" ... 158 3.4e-11 1
UNIPROTKB|Q9UNP9 - symbol:PPIE "Peptidyl-prolyl cis-trans... 158 3.4e-11 1
UNIPROTKB|F1SV03 - symbol:PPIE "Uncharacterized protein" ... 158 3.4e-11 1
MGI|MGI:1917118 - symbol:Ppie "peptidylprolyl isomerase E... 158 3.4e-11 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 136 3.4e-11 2
UNIPROTKB|Q5TGA3 - symbol:PPIE "Peptidyl-prolyl cis-trans... 158 4.0e-11 1
ZFIN|ZDB-GENE-050417-167 - symbol:ppie "peptidylprolyl is... 157 4.5e-11 1
UNIPROTKB|J9P7U8 - symbol:PPIE "Uncharacterized protein" ... 158 5.1e-11 1
DICTYBASE|DDB_G0288291 - symbol:DDB_G0288291 "putative RN... 152 5.8e-11 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 152 5.8e-11 1
UNIPROTKB|G3X6K3 - symbol:LOC534630 "Uncharacterized prot... 155 9.9e-11 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 155 1.1e-10 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 157 1.3e-10 1
WB|WBGene00000889 - symbol:cyn-13 species:6239 "Caenorhab... 153 1.7e-10 1
UNIPROTKB|Q9U2S6 - symbol:cyn-13 "Protein CYN-13, isoform... 153 1.7e-10 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 150 2.3e-10 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 149 2.8e-10 1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 151 2.9e-10 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 152 3.1e-10 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 145 3.2e-10 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 145 3.2e-10 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 145 3.2e-10 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 151 4.1e-10 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 149 4.6e-10 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 153 4.7e-10 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 125 5.0e-10 2
UNIPROTKB|F1MY46 - symbol:RBM23 "Uncharacterized protein"... 151 5.7e-10 1
CGD|CAL0006311 - symbol:orf19.2261 species:5476 "Candida ... 145 5.9e-10 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 149 6.2e-10 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 148 8.4e-10 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 148 8.4e-10 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 148 8.5e-10 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 148 8.5e-10 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 148 8.8e-10 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 147 1.0e-09 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 147 1.1e-09 1
TAIR|locus:2023903 - symbol:ATE1 "ATPase E1" species:3702... 139 1.4e-09 1
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 150 1.7e-09 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 138 1.8e-09 1
UNIPROTKB|E5RGV5 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 138 1.8e-09 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 138 1.8e-09 1
FB|FBgn0034834 - symbol:LS2 "Large Subunit 2" species:722... 146 1.9e-09 1
MGI|MGI:1919414 - symbol:Rbmx2 "RNA binding motif protein... 143 2.1e-09 1
SGD|S000003012 - symbol:RNA15 "Component of the cleavage ... 141 2.6e-09 1
ASPGD|ASPL0000007134 - symbol:AN6256 species:162425 "Emer... 136 2.9e-09 1
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein... 135 3.6e-09 1
UNIPROTKB|G5E5I0 - symbol:RBMX2 "Uncharacterized protein"... 141 3.7e-09 1
DICTYBASE|DDB_G0283687 - symbol:DDB_G0283687 "RNA-binding... 146 4.0e-09 1
ZFIN|ZDB-GENE-050626-88 - symbol:rbmx2 "RNA binding motif... 143 4.0e-09 1
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 144 4.0e-09 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 134 4.7e-09 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 134 4.7e-09 1
UNIPROTKB|F1LMQ9 - symbol:Rbmx2 "RNA-binding motif protei... 139 5.7e-09 1
WARNING: Descriptions of 889 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 508 (183.9 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 100/121 (82%), Positives = 107/121 (88%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSISFELKEDTIR AF PFGPIKSINMSWDPITQKHKGFAFVEY+IPE AQL+LEQ
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MNG ++GGRNIKV GRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDI
Sbjct: 191 MNGALMGGRNIKV-------GRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 121 (47.7 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L E+ I+ F FGPI ++ HKG+ F+EY +A ++
Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287
Query: 106 MNGVMLGGRNIKV 118
MN LGG+ ++V
Sbjct: 288 MNLFDLGGQLLRV 300
Score = 64 (27.6 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 20 PFLSTPLYDLKQVGPITPDVNSNSPLRVYVG 50
P+LS PLYDLKQ G + + S L +G
Sbjct: 41 PYLSQPLYDLKQTGDVKFGPGTRSALLGLLG 71
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 88/121 (72%), Positives = 104/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 153
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DI
Sbjct: 154 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDI 206
Query: 166 K 166
K
Sbjct: 207 K 207
Score = 169 (64.5 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS +++ DP T KHKG+ F+EYD ++AQ ++
Sbjct: 191 RIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSS 250
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 251 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 288
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 147 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 163 (62.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 244 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 281
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 152
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 153 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 205
Query: 166 K 166
K
Sbjct: 206 K 206
Score = 163 (62.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 190 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 249
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 250 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 287
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 161 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 213
Query: 166 K 166
K
Sbjct: 214 K 214
Score = 163 (62.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 258 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 295
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 161 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 213
Query: 166 K 166
K
Sbjct: 214 K 214
Score = 163 (62.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 258 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 295
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 174 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 226
Query: 166 K 166
K
Sbjct: 227 K 227
Score = 163 (62.4 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 211 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 270
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 271 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 308
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 191 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 243
Query: 166 K 166
K
Sbjct: 244 K 244
Score = 163 (62.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 228 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 287
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 288 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 325
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 172 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 224
Query: 166 K 166
K
Sbjct: 225 K 225
Score = 163 (62.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 209 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 268
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 269 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 306
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 128 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 187
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 188 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 240
Query: 166 K 166
K
Sbjct: 241 K 241
Score = 163 (62.4 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 225 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 284
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 285 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 322
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 190 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 242
Query: 166 K 166
K
Sbjct: 243 K 243
Score = 163 (62.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 227 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 286
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 287 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 324
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 22 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 81
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 82 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 134
Query: 166 K 166
K
Sbjct: 135 K 135
Score = 163 (62.4 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 119 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 178
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 179 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 216
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 195 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 247
Query: 166 K 166
K
Sbjct: 248 K 248
Score = 163 (62.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 292 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 329
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 195 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 247
Query: 166 K 166
K
Sbjct: 248 K 248
Score = 163 (62.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV S+ +L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 292 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAV 329
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRP ++ QAQ +I+++ EEA+ YNRIYVASIHPDL+++DI
Sbjct: 147 MNSVMLGGRNIKV-------GRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDI 199
Query: 166 K 166
K
Sbjct: 200 K 200
Score = 159 (61.0 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YV SI +L +D I+ F FG IKS ++ +P T KHKGF F+EY+ P+++ ++
Sbjct: 184 RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSS 243
Query: 106 MNGVMLGGRNIKVH------FPHVQVGRPSNMPQAQSV 137
MN LGG+ ++V P + P +P A +V
Sbjct: 244 MNLFDLGGQYLRVGKAVTPPMPLLTPTTPGGLPPAAAV 281
>UNIPROTKB|E9PN18 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
HGNC:HGNC:17042 IPI:IPI00983055 ProteinModelPortal:E9PN18
SMR:E9PN18 Ensembl:ENST00000529999 ArrayExpress:E9PN18 Bgee:E9PN18
Uniprot:E9PN18
Length = 263
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/121 (71%), Positives = 103/121 (85%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 150 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 209
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DI
Sbjct: 210 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 262
Query: 166 K 166
K
Sbjct: 263 K 263
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 416 (151.5 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 79/122 (64%), Positives = 98/122 (80%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVGSISFE++ED +R+AF PFGPIKSINMSWDP T HK FAFVEY++PEAA L+ E
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 106 MNGVMLGGRNIKVHFPHVQVGR-PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 164
MNG MLGGRN+KV+ Q R P NMPQAQ +ID + ++AK Y R+YV+S+HPDL+E D
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETD 222
Query: 165 IK 166
+K
Sbjct: 223 LK 224
Score = 107 (42.7 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 26/93 (27%), Positives = 48/93 (51%)
Query: 28 DLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
++ Q PI V ++ RVYV S+ +L E ++ F FG I ++ P + H
Sbjct: 188 NMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGH 247
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+GF ++E++ + ++ MN LGG+ ++V
Sbjct: 248 RGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRV 280
Score = 36 (17.7 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 123 VQVGRPSNMPQAQSVIDEITEE 144
+ V PS + Q Q I+E EE
Sbjct: 438 IVVPNPSFLAQQQQKIEEKIEE 459
>UNIPROTKB|E9PMU7 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
HGNC:HGNC:17042 IPI:IPI00976817 ProteinModelPortal:E9PMU7
SMR:E9PMU7 Ensembl:ENST00000531897 ArrayExpress:E9PMU7 Bgee:E9PMU7
Uniprot:E9PMU7
Length = 247
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 76/105 (72%), Positives = 88/105 (83%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 150 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 209
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNR 150
MN VMLGGRNIKV GRPSN+ QAQ +ID++ EEA+ +NR
Sbjct: 210 MNSVMLGGRNIKV-------GRPSNIGQAQPIIDQLAEEARAFNR 247
>UNIPROTKB|H0YCP8 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
Uniprot:H0YCP8
Length = 273
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 58/81 (71%), Positives = 68/81 (83%)
Query: 54 FELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGG 113
+EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQMN VMLGG
Sbjct: 3 YELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG 62
Query: 114 RNIKVHFPHVQVGRPSNMPQA 134
RNIKV + G +++PQA
Sbjct: 63 RNIKV-----RQGAKASIPQA 78
Score = 141 (54.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 55 ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGR 114
+L +D I+ F FG IKS ++ DP T KHKG+ F+EY+ +++Q ++ MN LGG+
Sbjct: 106 DLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 165
Query: 115 NIKVH------FPHVQVGRPSNMPQAQSV 137
++V P + P +P A +V
Sbjct: 166 YLRVGKAVTPPMPLLTPATPGGLPPAAAV 194
>UNIPROTKB|E9PL19 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
HGNC:HGNC:17042 IPI:IPI00984548 ProteinModelPortal:E9PL19
SMR:E9PL19 Ensembl:ENST00000533162 ArrayExpress:E9PL19 Bgee:E9PL19
Uniprot:E9PL19
Length = 228
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 51/62 (82%), Positives = 57/62 (91%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RVYVGSI +EL EDTIRQAF PFGPIKSI+MSWD +T KHKGFAFVEY++PEAAQL+LEQ
Sbjct: 167 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 226
Query: 106 MN 107
MN
Sbjct: 227 MN 228
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 183 (69.5 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 44/105 (41%), Positives = 57/105 (54%)
Query: 34 PITPDVN---SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
PI P +N S R+YVGS+ F L ED IR F FG IKS+ + D + K KG+AF
Sbjct: 574 PIPPTLNQSTSQDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAF 632
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQ 135
+EYD E+A +L+ M ++ GR IKV P G Q Q
Sbjct: 633 IEYDNQESAAKALQSMTNYVMCGRAIKVARPFTGTGSHQQQQQQQ 677
Score = 169 (64.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 36/97 (37%), Positives = 56/97 (57%)
Query: 25 PLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK 84
P D+ + P V N R+Y+GSI++ + ED +R F FG + S + + T K
Sbjct: 749 PTPDVPKPNESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGK 808
Query: 85 HKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFP 121
HKGF FV++++ ++A ++ MNG L GR+IKV P
Sbjct: 809 HKGFGFVDFELKKSADDAIATMNGFELLGRSIKVGRP 845
Score = 44 (20.5 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+RIY+ SI+ ++TE+ ++
Sbjct: 769 SRIYIGSINWNVTEDQVR 786
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 177 (67.4 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+
Sbjct: 89 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 148
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 149 KALEQLNGFELAGRPMKV 166
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 177 (67.4 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I+SI + D T + KG+ F+ + E A+
Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 306 KALEQLNGFELAGRPMKV 323
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 174 (66.3 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 44/132 (33%), Positives = 71/132 (53%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+++ V+VG +S E+ +R+AF PFG + + D T K KG+ FV Y E
Sbjct: 129 IDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREE 188
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVG---RPSNMPQAQSVIDEITEEAKLYNR-IYVA 154
A+ ++EQMNG LG R I+ ++ + G +PS+ + DEI + N +YV
Sbjct: 189 AERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKS--YDEIYNQTSGDNTSVYVG 246
Query: 155 SIHPDLTEEDIK 166
+I LTE++I+
Sbjct: 247 NI-ASLTEDEIR 257
Score = 113 (44.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L ED IRQ F FG I + + K +G+AFV++D +AA ++ QM
Sbjct: 243 VYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQM 295
Query: 107 NGVMLGGRNIK 117
N +GG+ ++
Sbjct: 296 NNQDVGGQLVR 306
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 175 (66.7 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ F + ED +R F PFG I SI + D T + KG+ F+ + E A+
Sbjct: 242 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAK 301
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +KV
Sbjct: 302 KALEQLNGFELAGRPMKV 319
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 36/101 (35%), Positives = 55/101 (54%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A+
Sbjct: 9 NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 68
Query: 101 LSLEQMNGVMLGGRNIKV-HFPH-VQVGRPSNMPQAQSVID 139
+LEQ+NG L GR ++V H + G P +D
Sbjct: 69 RALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELD 109
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 36/101 (35%), Positives = 55/101 (54%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A+
Sbjct: 34 NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 93
Query: 101 LSLEQMNGVMLGGRNIKV-HFPH-VQVGRPSNMPQAQSVID 139
+LEQ+NG L GR ++V H + G P +D
Sbjct: 94 RALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELD 134
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 174 (66.3 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 39/96 (40%), Positives = 56/96 (58%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P+R+YVGS+ F + ED +R F PFG I+ I + D T + KG+ F+ + E A+ +L
Sbjct: 263 PMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKAL 322
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVID 139
EQ+NG L GR +KV HV S+ A S +D
Sbjct: 323 EQLNGFELAGRPMKVG--HVT--ERSDASSASSFLD 354
>FB|FBgn0028382 [details] [associations]
symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
Uniprot:Q9V3G3
Length = 300
Score = 167 (63.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
SN +YVG ++ E+ E + AF+PFG I I M D +Q+H+GFAF+EY+ E A
Sbjct: 2 SNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAA 61
Query: 101 LSLEQMNGVMLGGRNIKVHFPH-VQVGRPSNMP 132
+++ MN L GR I+V+ V+V S P
Sbjct: 62 AAIDNMNDSELCGRTIRVNLAKPVRVKEDSFKP 94
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 165 (63.1 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 36/101 (35%), Positives = 55/101 (54%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A+
Sbjct: 89 NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 148
Query: 101 LSLEQMNGVMLGGRNIKV-HFPH-VQVGRPSNMPQAQSVID 139
+LEQ+NG L GR ++V H + G P +D
Sbjct: 149 RALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELD 189
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 171 (65.3 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 37/101 (36%), Positives = 57/101 (56%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A+
Sbjct: 260 SSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 319
Query: 101 LSLEQMNGVMLGGRNIKV-HFPH-VQVGRPSNMPQAQSVID 139
+LEQ+NG L GR ++V H + G P + +D
Sbjct: 320 RALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGEQELD 360
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 172 (65.6 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 29 LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
L+ P + P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+
Sbjct: 319 LQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGY 378
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
F+ Y + A+ +LEQ+NG L GR +KV
Sbjct: 379 GFITYHNADDAKKALEQLNGFELAGRLMKV 408
>UNIPROTKB|E9PK21 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
Uniprot:E9PK21
Length = 208
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 165 (63.1 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 36/101 (35%), Positives = 55/101 (54%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A+
Sbjct: 259 NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 318
Query: 101 LSLEQMNGVMLGGRNIKV-HFPH-VQVGRPSNMPQAQSVID 139
+LEQ+NG L GR ++V H + G P +D
Sbjct: 319 RALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELD 359
>UNIPROTKB|E1BUM0 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
UniGene:Gga.4709 ProteinModelPortal:E1BUM0
Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
Length = 301
Score = 161 (61.7 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>RGD|1311411 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
Uniprot:Q7TP89
Length = 255
Score = 158 (60.7 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 163 (62.4 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+ P+R+YVGS+ F + ED +R F PFG I +I + D T + KG+ F+ + E A+
Sbjct: 250 TGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 309
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +++
Sbjct: 310 RALEQLNGFELAGRPMRI 327
>UNIPROTKB|A4FV72 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
InterPro:IPR016304 InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160
PIRSF:PIRSF001475 PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0006457 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 EMBL:BC123818 IPI:IPI00686175
RefSeq:NP_001091630.1 UniGene:Bt.21742 ProteinModelPortal:A4FV72
SMR:A4FV72 PRIDE:A4FV72 GeneID:787681 KEGG:bta:787681 CTD:10450
KO:K09564 NextBio:20928622 Uniprot:A4FV72
Length = 301
Score = 158 (60.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>UNIPROTKB|G3MZS9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0006457 "protein folding"
evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 UniGene:Bt.21742 OMA:AFIEFEL
EMBL:DAAA02009142 Ensembl:ENSBTAT00000063035 Uniprot:G3MZS9
Length = 301
Score = 158 (60.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>UNIPROTKB|E2QVB5 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 EMBL:AAEX03009569
EMBL:AAEX03009570 RefSeq:XP_848739.1 Ensembl:ENSCAFT00000004892
GeneID:607232 KEGG:cfa:607232 NextBio:20892973 Uniprot:E2QVB5
Length = 301
Score = 158 (60.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>UNIPROTKB|Q9UNP9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=IMP] [GO:0016018 "cyclosporin A binding"
evidence=TAS] [GO:0000413 "protein peptidyl-prolyl isomerization"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0006355 GO:GO:0000166 EMBL:CH471059
EMBL:AL035404 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 EMBL:AL033527 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0016018 PDB:2KU7 PDBsum:2KU7
HOVERGEN:HBG001065 CTD:10450 KO:K09564 EMBL:AF104012 EMBL:AF104013
EMBL:AF042385 EMBL:AF042386 EMBL:AK313666 EMBL:AL049824
EMBL:BC004898 EMBL:BC008451 EMBL:BC107736 IPI:IPI00009316
IPI:IPI00220188 PIR:S66681 RefSeq:NP_006103.1 RefSeq:NP_982281.1
UniGene:Hs.524690 PDB:1ZMF PDB:2CQB PDB:2KYX PDB:2R99 PDB:3LPY
PDB:3MDF PDB:3UCH PDBsum:1ZMF PDBsum:2CQB PDBsum:2KYX PDBsum:2R99
PDBsum:3LPY PDBsum:3MDF PDBsum:3UCH ProteinModelPortal:Q9UNP9
SMR:Q9UNP9 IntAct:Q9UNP9 STRING:Q9UNP9 PhosphoSite:Q9UNP9
DMDM:13124097 PaxDb:Q9UNP9 PRIDE:Q9UNP9 DNASU:10450
Ensembl:ENST00000324379 Ensembl:ENST00000356511 GeneID:10450
KEGG:hsa:10450 UCSC:uc001cds.2 UCSC:uc001cdv.3
GeneCards:GC01P040157 HGNC:HGNC:9258 HPA:HPA020131 MIM:602435
neXtProt:NX_Q9UNP9 PharmGKB:PA33583 OrthoDB:EOG4STS55
PhylomeDB:Q9UNP9 ChiTaRS:PPIE EvolutionaryTrace:Q9UNP9
GenomeRNAi:10450 NextBio:39609 ArrayExpress:Q9UNP9 Bgee:Q9UNP9
CleanEx:HS_PPIE Genevestigator:Q9UNP9 GermOnline:ENSG00000084072
Uniprot:Q9UNP9
Length = 301
Score = 158 (60.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>UNIPROTKB|F1SV03 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 KO:K09564 OMA:AFIEFEL EMBL:CR956427
RefSeq:XP_003127865.1 Ensembl:ENSSSCT00000004060 GeneID:100516562
KEGG:ssc:100516562 Uniprot:F1SV03
Length = 301
Score = 158 (60.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>MGI|MGI:1917118 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0045070 "positive regulation of viral
genome replication" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1917118 GO:GO:0006457 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065
CTD:10450 KO:K09564 OMA:AFIEFEL OrthoDB:EOG4STS55 EMBL:AK008177
EMBL:BC045154 EMBL:AF182825 IPI:IPI00111343 RefSeq:NP_062362.1
UniGene:Mm.126873 ProteinModelPortal:Q9QZH3 SMR:Q9QZH3
STRING:Q9QZH3 PhosphoSite:Q9QZH3 REPRODUCTION-2DPAGE:IPI00111343
PaxDb:Q9QZH3 PRIDE:Q9QZH3 Ensembl:ENSMUST00000030404 GeneID:56031
KEGG:mmu:56031 UCSC:uc008uow.1 InParanoid:Q9QZH3 NextBio:311788
Bgee:Q9QZH3 CleanEx:MM_PPIE Genevestigator:Q9QZH3
GermOnline:ENSMUSG00000028651 Uniprot:Q9QZH3
Length = 301
Score = 158 (60.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 136 (52.9 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 34 PITPDVNSNSP-----LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
P P N + P V+VG + E+ +R+AF+ FG + + D T K KG+
Sbjct: 116 PREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGY 175
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
FV Y E A+ ++++MNG LG R I+ ++
Sbjct: 176 GFVSYPRREDAERAIDEMNGAWLGRRTIRTNW 207
Score = 123 (48.4 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I+ L ED IR+AF FGPI + T K +G+AFV+++ E+A ++ QM
Sbjct: 258 VYVGNIA-NLGEDEIRRAFDRFGPINEVR------TFKIQGYAFVKFETKESAARAIVQM 310
Query: 107 NGVMLGGRNIKVHFPHV-QVGRPS 129
N +GG+ ++ + G+PS
Sbjct: 311 NNADIGGQIVRCSWGKSGDSGKPS 334
Score = 47 (21.6 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 126 GRPSNMPQAQSVIDEITEEAKLYNR-IYVASIHPDLTEEDIK 166
GR Q++ DEI +A N +YV +I +L E++I+
Sbjct: 232 GRDRYHNQSEKTYDEIFNQAAADNTSVYVGNI-ANLGEDEIR 272
>UNIPROTKB|Q5TGA3 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 EMBL:AL035404
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL033527 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 HOVERGEN:HBG001065 CTD:10450
KO:K09564 OMA:AFIEFEL EMBL:AL049824 UniGene:Hs.524690 DNASU:10450
GeneID:10450 KEGG:hsa:10450 HGNC:HGNC:9258 ChiTaRS:PPIE
GenomeRNAi:10450 NextBio:39609 IPI:IPI00514173
RefSeq:NP_001181936.1 SMR:Q5TGA3 MINT:MINT-1475497 STRING:Q5TGA3
Ensembl:ENST00000372830 UCSC:uc001cdw.3 Uniprot:Q5TGA3
Length = 314
Score = 158 (60.7 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>ZFIN|ZDB-GENE-050417-167 [details] [associations]
symbol:ppie "peptidylprolyl isomerase E
(cyclophilin E)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050417-167 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 CTD:10450 KO:K09564 OrthoDB:EOG4STS55
EMBL:BC093329 IPI:IPI00511584 RefSeq:NP_001017678.1
UniGene:Dr.79339 ProteinModelPortal:Q561T2 SMR:Q561T2 GeneID:550373
KEGG:dre:550373 InParanoid:Q561T2 NextBio:20879625 Uniprot:Q561T2
Length = 302
Score = 157 (60.3 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/87 (35%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG I I + D T+KH+GFAF+E+++ E + +++ M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDSAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNIAKPMRIKEGSSRP 94
>UNIPROTKB|J9P7U8 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 OMA:AFIEFEL EMBL:AAEX03009569
EMBL:AAEX03009570 Ensembl:ENSCAFT00000046678 Uniprot:J9P7U8
Length = 343
Score = 158 (60.7 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 107 NGVMLGGRNIKVHFPH-VQVGRPSNMP 132
N L GR I+V+ +++ S+ P
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRP 94
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 35 ITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
+T VN + L YVG IS ++ D +R AF+PFG I + + D TQK KGF F++++
Sbjct: 7 LTKGVNKKNVL--YVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFE 64
Query: 95 IPEAAQLSLEQMNGVMLGGRNIK 117
+PE A +L+ M+ + GR IK
Sbjct: 65 LPEDAADALDNMHESEIFGRVIK 87
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 36 TPDVNSNSP-LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYD 94
+P +S+ P ++YV +SF EDT+R F FG + +NM D + + KGFAF+ Y+
Sbjct: 67 SPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYE 126
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKV 118
E A +++ M+G L GR I V
Sbjct: 127 TEEEAMKAIQGMHGKFLDGRVIFV 150
>UNIPROTKB|G3X6K3 [details] [associations]
symbol:LOC534630 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
Length = 330
Score = 155 (59.6 bits), Expect = 9.9e-11, P = 9.9e-11
Identities = 34/98 (34%), Positives = 55/98 (56%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G + +EL E I F +G I +IN+ WD T K KGF F+ Y+ + L+++
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
NG+ + GR I+V HV R +P+ +DE+T E
Sbjct: 98 NGIKIKGRTIRVD--HVSNYR---LPEDSEEMDEVTRE 130
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 155 (59.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 40/135 (29%), Positives = 69/135 (51%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ D +R AF PFG I + D T K KG+ F+ +
Sbjct: 86 PSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISF 145
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP-SNMPQAQSV---IDEITEEAKLYN 149
A+ +++QMNG LGGR I+ ++ + P SN A S +E+ ++ N
Sbjct: 146 INKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSN 205
Query: 150 -RIYVASIHPDLTEE 163
+Y I L+++
Sbjct: 206 CTVYCGGIASGLSDQ 220
Score = 113 (44.8 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 32/128 (25%), Positives = 65/128 (50%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++S ++ E I Q F GP KS M D T + + FVE+
Sbjct: 3 MDEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRH 60
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MNG + G+++KV++ ++ P +Q ++ + ++V + P
Sbjct: 61 AAAALAAMNGRKILGKDMKVNW--------ASTPSSQK------KDTSNHFHVFVGDLSP 106
Query: 159 DLTEEDIK 166
+++ +D++
Sbjct: 107 EISTDDVR 114
Score = 112 (44.5 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
+N +SP VY G I+ L + +RQ F PFG I I + P KG++FV +D
Sbjct: 198 LNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFDSH 251
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E A ++ +NG + G +K ++
Sbjct: 252 EGAAHAIVSVNGTCIEGHTVKCYW 275
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 157 (60.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + +S ++VG +S E++ +T+R+AF PFG I + + DP T K KG+AFV +
Sbjct: 87 PKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKK 146
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
A+ +++ MNG +G R+I+ ++
Sbjct: 147 AEAENAIQAMNGQWIGSRSIRTNW 170
Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 32/128 (25%), Positives = 63/128 (49%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ + P +YVG++ + ED + F GP+KS + +P + +AF+EY +A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREP---GNDPYAFIEYSNYQA 57
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A +L MN + + IKV++ P N P+ +I+ ++ I+V + P
Sbjct: 58 ATTALTAMNKRLFLEKEIKVNW----ATSPGNQPKT-----DISS----HHHIFVGDLSP 104
Query: 159 DLTEEDIK 166
++ E ++
Sbjct: 105 EIETETLR 112
>WB|WBGene00000889 [details] [associations]
symbol:cyn-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IGI;IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 153 (58.9 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N +YVG + ++ E + AF+PFG + +I++ D + KH+GF FVE+D+ E A +
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAM 67
Query: 102 SLEQMNGVMLGGRNIKVHF 120
+++ MN L G+ I+V+F
Sbjct: 68 AIDNMNESELFGKTIRVNF 86
>UNIPROTKB|Q9U2S6 [details] [associations]
symbol:cyn-13 "Protein CYN-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 153 (58.9 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N +YVG + ++ E + AF+PFG + +I++ D + KH+GF FVE+D+ E A +
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAM 67
Query: 102 SLEQMNGVMLGGRNIKVHF 120
+++ MN L G+ I+V+F
Sbjct: 68 AIDNMNESELFGKTIRVNF 86
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 150 (57.9 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 38/134 (28%), Positives = 68/134 (50%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEE 163
+Y + LTE+
Sbjct: 204 TVYCGGVTSGLTEQ 217
Score = 121 (47.7 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 35/123 (28%), Positives = 60/123 (48%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 149 (57.5 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 38/134 (28%), Positives = 68/134 (50%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 80 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 139
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 140 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNC 199
Query: 150 RIYVASIHPDLTEE 163
+Y + LTE+
Sbjct: 200 TVYCGGVTSGLTEQ 213
Score = 121 (47.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 35/123 (28%), Positives = 60/123 (48%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 2 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 59
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 60 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 105
Query: 164 DIK 166
DIK
Sbjct: 106 DIK 108
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 151 (58.2 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N S V+VG+IS+++ EDTIR F G + SI M D T K KG+ F+E+ + A
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTA 72
Query: 100 QLSLEQMNGVMLGGRNIKV 118
++++ +NG L GR ++V
Sbjct: 73 EVAIRNLNGYELSGRILRV 91
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 152 (58.6 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 39/134 (29%), Positives = 66/134 (49%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ D IR AF PFG I + D T K KG+ FV +
Sbjct: 85 PSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSF 144
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV---IDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + + DE+ ++ N
Sbjct: 145 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNC 204
Query: 150 RIYVASIHPDLTEE 163
+Y + LTE+
Sbjct: 205 TVYCGGVTTGLTEQ 218
Score = 118 (46.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 32/99 (32%), Positives = 49/99 (49%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I + + D KG++FV ++
Sbjct: 196 VNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD------KGYSFVRFNSH 249
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQ 135
E+A ++ +NG L G +K ++ S M Q Q
Sbjct: 250 ESAAHAIVSVNGTSLEGHIVKCYWGKETTDMVSPMQQVQ 288
Score = 118 (46.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 35/128 (27%), Positives = 62/128 (48%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
++ P +YVG++S ++ E I Q F GP KS M D T + + FVE+
Sbjct: 2 MDDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRH 59
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
A SL MNG + G+ +KV++ + P +Q ++ + ++V + P
Sbjct: 60 AAASLAAMNGRKIMGKEVKVNW--------ATSPSSQK------KDTSNHFHVFVGDLSP 105
Query: 159 DLTEEDIK 166
++T +DI+
Sbjct: 106 EITTDDIR 113
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVGS+S+++ D ++ F +G I+ + D T + KGFAF+ Y +AAQ ++ +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 106 MNGVMLGGRNIKVHFPHVQVG 126
NG+ L GR I+V+ G
Sbjct: 79 ANGIDLQGRKIRVNIARENTG 99
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVGS+S+++ D ++ F +G I+ + D T + KGFAF+ Y +AAQ ++ +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 106 MNGVMLGGRNIKVHFPHVQVG 126
NG+ L GR I+V+ G
Sbjct: 79 ANGIDLQGRKIRVNIARENTG 99
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG++ ++ E+ I F G + ++ + +D T + +GFAFVE+ AQ ++EQ+
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 107 NGVMLGGRNIKVHF 120
NGV GRN++V++
Sbjct: 68 NGVAFNGRNLRVNY 81
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 151 (58.2 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 40/133 (30%), Positives = 64/133 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ D IR AF PFG I + D T K KG+ FV +
Sbjct: 104 PSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSF 163
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQ---AQSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P ++ Q DE+ ++ N
Sbjct: 164 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNC 223
Query: 150 RIYVASIHPDLTE 162
+Y I LTE
Sbjct: 224 TVYCGGIQSGLTE 236
Score = 106 (42.4 bits), Expect = 0.00013, P = 0.00013
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I L E +RQ F PFG I I + P KG++F+ +
Sbjct: 215 VNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVF--P----EKGYSFIRFSSH 268
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 269 ESAAHAIVSVNGTTIEGHVVKCYW 292
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 149 (57.5 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 30/121 (24%), Positives = 63/121 (52%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG++ + + + Q F G + + + +D +T + +GF FV E A+ +++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
N +GGR +KV+FP V G + + + + + D +++Y ++ +LT + +
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTK-IRDNNRSYVDSPHKVYAGNLGWNLTSQGL 235
Query: 166 K 166
K
Sbjct: 236 K 236
Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/115 (26%), Positives = 61/115 (53%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+SP +VY G++ + L ++ AF + + ++ T + +GF F+ ++ E Q
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASI 156
+L MNGV + GR ++++ + +P+ P SV + TEEA L + ++++
Sbjct: 276 ALATMNGVEVEGRALRLNLASERE-KPTVSPP--SVEEGETEEASLESNEVLSNV 327
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 153 (58.9 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 33/91 (36%), Positives = 55/91 (60%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+YVG+I F + E+ ++ F PFG ++ + + D T + +G+ FV++ P A+ +LE+
Sbjct: 274 RLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEK 332
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQS 136
MNG LGGR I+V + + P N + QS
Sbjct: 333 MNGYDLGGRAIRVGLGNDKF-TPENTQRTQS 362
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 125 (49.1 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+++S ++VG +S E+ + T+ Q+F F + WD T + +GF FV + + A
Sbjct: 139 DTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 198
Query: 100 QLSLEQMNGVMLGGRNIKVHF 120
Q ++ +MNG L R I+ ++
Sbjct: 199 QTAINEMNGKWLSSRQIRCNW 219
Score = 107 (42.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 34/137 (24%), Positives = 63/137 (45%)
Query: 22 LSTPLYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPI 81
L+ P + G + P + ++ VYVG+I ++ E +++ F GP++S + I
Sbjct: 36 LAPPQLEPVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKL----I 91
Query: 82 TQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEI 141
+ + FV Y +A L++ +NG L G+ IKV++ + R + ++
Sbjct: 92 RKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDL 151
Query: 142 TEE---AKLYNRIYVAS 155
+ E A LY V S
Sbjct: 152 SPEVTDATLYQSFSVFS 168
Score = 47 (21.6 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 123 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
V++ S+ +++ +E E + +YV ++ P++T+ D+
Sbjct: 239 VELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDL 281
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 151 (58.2 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S P+R+YVGS+ + ED +R PFG I +I + D T + KG+ F+ + E A+
Sbjct: 274 SGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECAR 333
Query: 101 LSLEQMNGVMLGGRNIKV 118
+LEQ+NG L GR +++
Sbjct: 334 RALEQLNGFELAGRPMRI 351
>CGD|CAL0006311 [details] [associations]
symbol:orf19.2261 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0006311 GO:GO:0000166
EMBL:AACQ01000095 EMBL:AACQ01000096 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG282907 KO:K12831 RefSeq:XP_714789.1
RefSeq:XP_714851.1 ProteinModelPortal:Q59Z39 STRING:Q59Z39
GeneID:3643500 GeneID:3643580 KEGG:cal:CaO19.2261
KEGG:cal:CaO19.9801 Uniprot:Q59Z39
Length = 259
Score = 145 (56.1 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
D + N +Y G+I ++ E + + F+ FGP+KSINM D I + H+G+ FVE+
Sbjct: 10 DSDRNIDASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSA 69
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
A+ ++E + G+ L G+ +K+ + +N P Q++
Sbjct: 70 DAKYTMEILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTI 109
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 149 (57.5 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 38/134 (28%), Positives = 68/134 (50%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNC 203
Query: 150 RIYVASIHPDLTEE 163
+Y + LTE+
Sbjct: 204 TVYCGGVTSGLTEQ 217
Score = 121 (47.7 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 35/123 (28%), Positives = 60/123 (48%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
Score = 104 (41.7 bits), Expect = 0.00035, P = 0.00035
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 39 VNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
V+ +SP VY G ++ L E +RQ F PFG I I + D KG++F+ +
Sbjct: 195 VSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFSSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 249 ESAAHAIVSVNGTTIEGHVVKCYW 272
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 148 (57.2 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 38/127 (29%), Positives = 63/127 (49%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEE 163
LTE+
Sbjct: 222 TSGLTEQ 228
Score = 136 (52.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + + + +V+ T+ ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDT-SSSTVVS--TQRSQDHFHVFVGDLSPEITTE 120
Query: 164 DIK 166
DIK
Sbjct: 121 DIK 123
Score = 111 (44.1 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 148 (57.2 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 38/127 (29%), Positives = 63/127 (49%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEE 163
LTE+
Sbjct: 222 TSGLTEQ 228
Score = 138 (53.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + + + +V+ T+ ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDT-SSSTVVS--TQRSQDHFHVFVGDLSPEITTE 120
Query: 164 DIK 166
DIK
Sbjct: 121 DIK 123
Score = 111 (44.1 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 148 (57.2 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 38/127 (29%), Positives = 63/127 (49%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEE 163
LTE+
Sbjct: 222 TSGLTEQ 228
Score = 138 (53.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + + + +V+ T+ ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDT-SSSTVVS--TQRSQDHFHVFVGDLSPEITTE 120
Query: 164 DIK 166
DIK
Sbjct: 121 DIK 123
Score = 111 (44.1 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 148 (57.2 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 38/127 (29%), Positives = 63/127 (49%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGV 221
Query: 157 HPDLTEE 163
LTE+
Sbjct: 222 TSGLTEQ 228
Score = 138 (53.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + + + +V+ T+ ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDT-SSSTVVS--TQRSQDHFHVFVGDLSPEITTE 120
Query: 164 DIK 166
DIK
Sbjct: 121 DIK 123
Score = 105 (42.0 bits), Expect = 0.00020, P = 0.00020
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 39 VNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
V+ +SP VY G ++ L E +RQ F PFG I I + D KG++FV +
Sbjct: 206 VSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 148 (57.2 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 38/127 (29%), Positives = 63/127 (49%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
Query: 157 HPDLTEE 163
LTE+
Sbjct: 222 TSGLTEQ 228
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + + + +V+ T+ ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDT-SSSTVVS--TQRSQDHFHVFVGDLSPEITTE 120
Query: 164 DIK 166
DIK
Sbjct: 121 DIK 123
Score = 111 (44.1 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKCYW 283
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 147 (56.8 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 37/134 (27%), Positives = 68/134 (50%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 84 PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ +++QM G LGGR I+ ++ + P + ++ Q D++ ++ N
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNC 203
Query: 150 RIYVASIHPDLTEE 163
+Y + LTE+
Sbjct: 204 TVYCGGVTSGLTEQ 217
Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 35/123 (28%), Positives = 60/123 (48%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + P +Q ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPEITTE 109
Query: 164 DIK 166
DIK
Sbjct: 110 DIK 112
Score = 111 (44.1 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G ++ L E +RQ F PFG I I + D KG++FV ++
Sbjct: 195 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 248
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 249 ESAAHAIVSVNGTTIEGHVVKCYW 272
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 147 (56.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 38/127 (29%), Positives = 63/127 (49%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 98 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 157
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN-RIYVASI 156
+++QM G LGGR I+ ++ + P + ++ Q DE+ ++ N +Y +
Sbjct: 158 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGV 217
Query: 157 HPDLTEE 163
LTE+
Sbjct: 218 TSGLTEQ 224
Score = 138 (53.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 2 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 59
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + + + +V+ T+ ++ + ++V + P++T E
Sbjct: 60 AAMNGRKIMGKEVKVNWATTPSSQKKDT-SSSTVVS--TQRSQDHFHVFVGDLSPEITTE 116
Query: 164 DIK 166
DIK
Sbjct: 117 DIK 119
Score = 104 (41.7 bits), Expect = 0.00036, P = 0.00036
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 39 VNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
V+ +SP VY G ++ L E +RQ F PFG I I + D KG++F+ +
Sbjct: 202 VSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFSSH 255
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 256 ESAAHAIVSVNGTTIEGHVVKCYW 279
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG ++ E+ E + AF+PFG IK + D QKH+ F FV + E A +++ M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 107 NGVMLGGRNIKVHF 120
+G L GR + V++
Sbjct: 75 DGAELYGRVLTVNY 88
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 150 (57.9 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 35/117 (29%), Positives = 63/117 (53%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++VG +S E++ +R+AF PFG I + DP T K KG+ FV + A+ ++ M
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV-IDEITEEAKLYN-RIYVASIHPDLT 161
NG LG R+I+ ++ + P++ + + DE+ ++ N +YV ++ LT
Sbjct: 523 NGQWLGSRSIRTNWATRKP--PASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALT 577
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + + + +V+ T+ ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDT-SSSTVVS--TQRSQDHFHVFVGDLSPEITTE 120
Query: 164 DIK 166
DIK
Sbjct: 121 DIK 123
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 34/109 (31%), Positives = 56/109 (51%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S V+VG +S E+ + I+ AF PFG I + D T K KG+ FV + A+
Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYN 149
+++QM G LGGR I+ ++ + P + + + I EE +++N
Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYECRC----IGEEKEMWN 206
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +YVG++S ++ E I Q F GP K+ M D T + + FVE+ A +L
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
MNG + G+ +KV++ + + + +V+ T+ ++ + ++V + P++T E
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDT-SSSTVVS--TQRSQDHFHVFVGDLSPEITTE 120
Query: 164 DIK 166
DIK
Sbjct: 121 DIK 123
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG ++F E + F FGPI + + D TQ+ +GF F+ + PE A +++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 67 MNGESLDGRQIRV 79
>FB|FBgn0034834 [details] [associations]
symbol:LS2 "Large Subunit 2" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0060968 "regulation of gene silencing"
evidence=IMP] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033119 GO:GO:0060968
HSSP:P26368 eggNOG:NOG298004 TIGRFAMs:TIGR01642 EMBL:AY075220
ProteinModelPortal:Q8T8Y4 SMR:Q8T8Y4 STRING:Q8T8Y4 PaxDb:Q8T8Y4
PRIDE:Q8T8Y4 FlyBase:FBgn0034834 InParanoid:Q8T8Y4
OrthoDB:EOG40K6F6 ArrayExpress:Q8T8Y4 Bgee:Q8T8Y4 Uniprot:Q8T8Y4
Length = 449
Score = 146 (56.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 33/106 (31%), Positives = 56/106 (52%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P+T V +SP ++YVG + L +D +++ FG +K +N+ D T +KGFAF EY
Sbjct: 232 PVTTIV-PDSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEY 290
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVH--FPHVQVGRPSNMPQAQSV 137
P ++ ++G++LG R + V P + P ++P V
Sbjct: 291 CDPSVTDHAIAGLHGMLLGDRRLVVQRSIPGGKNAFPGHLPTVLQV 336
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 143 (55.4 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 34/98 (34%), Positives = 53/98 (54%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++VG + +EL E I F +G I +IN+ D T K KGF F+ Y+ + L+++
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
NG+ + GR I+V HV R PQ +D++T E
Sbjct: 98 NGIKIKGRTIRVD--HVSNYRA---PQESEDVDDVTRE 130
>SGD|S000003012 [details] [associations]
symbol:RNA15 "Component of the cleavage and polyadenylation
factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0006379 "mRNA
cleavage" evidence=IDA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000003012
EMBL:BK006941 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:NOG246793 GO:GO:0006378 GO:GO:0006379 GO:GO:0005849
KO:K14407 InterPro:IPR026896 Pfam:PF14304
GeneTree:ENSGT00550000074641 OrthoDB:EOG4GQTF6 PDB:2KM8 PDBsum:2KM8
PDB:2L9B PDBsum:2L9B EMBL:M73462 EMBL:Z72566 PIR:B40257
RefSeq:NP_011471.1 PDB:2X1A PDB:2X1B PDB:2X1F PDBsum:2X1A
PDBsum:2X1B PDBsum:2X1F ProteinModelPortal:P25299 SMR:P25299
DIP:DIP-1489N IntAct:P25299 MINT:MINT-389896 STRING:P25299
PaxDb:P25299 PeptideAtlas:P25299 EnsemblFungi:YGL044C GeneID:852838
KEGG:sce:YGL044C CYGD:YGL044c HOGENOM:HOG000247912 OMA:NINMTTP
EvolutionaryTrace:P25299 NextBio:972414 Genevestigator:P25299
GermOnline:YGL044C Uniprot:P25299
Length = 296
Score = 141 (54.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 31/89 (34%), Positives = 52/89 (58%)
Query: 30 KQVGPITPDVNSNSPLRV-YVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
+Q G + V +N P RV Y+GSI ++ E+ I GP+ ++ M +DP T + KG+
Sbjct: 3 RQSG-VNAGVQNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGY 61
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIK 117
AF+E+ E++ ++ +NG LG R +K
Sbjct: 62 AFIEFRDLESSASAVRNLNGYQLGSRFLK 90
>ASPGD|ASPL0000007134 [details] [associations]
symbol:AN6256 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACD01000107 EMBL:BN001301
GO:GO:0016853 HOGENOM:HOG000276232 eggNOG:NOG331137
OrthoDB:EOG4TJ03G RefSeq:XP_663860.1 ProteinModelPortal:Q5AZM4
STRING:Q5AZM4 EnsemblFungi:CADANIAT00006735 GeneID:2871037
KEGG:ani:AN6256.2 OMA:TAVWEQE Uniprot:Q5AZM4
Length = 153
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPI---TQKHKGFAFVEYDIPEAAQLSL 103
VYVG + + T+ +AF+PFG + I + + H+GF +VE+D PE A+ ++
Sbjct: 11 VYVGGLDQAVSVQTLAEAFVPFGEVVDITLPKPDLPNSNDNHRGFGYVEFDSPEDAKEAI 70
Query: 104 EQMNGVMLGGRNIKV 118
+ M+G L GR IKV
Sbjct: 71 DNMDGSELYGRTIKV 85
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/97 (30%), Positives = 54/97 (55%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V++G + ++L E + F +G + +IN+ D T K KGF F+ Y+ + L+++
Sbjct: 38 VFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITE 143
NG+ + GR I+V HV RP P+ +D++T+
Sbjct: 98 NGIKIKGRTIRVD--HVANYRP---PKDSDDLDDVTK 129
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 141 (54.7 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 33/98 (33%), Positives = 54/98 (55%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G + +EL E I F +G I +IN+ D T K KGF F+ Y+ + L+++
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
NG+ + GR I+V HV R +P+ +DE+T E
Sbjct: 98 NGIKIKGRTIRVD--HVSNYR---LPEDSEEMDEVTRE 130
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 146 (56.5 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 37/121 (30%), Positives = 62/121 (51%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+S R+YVG I + E+ IR F P+G I IN+ P K +AF+++ E+A
Sbjct: 355 SSGGESRIYVGYIHLSVAEEQIRVIFQPYGDIDFINIHTKPGISK---YAFIQFKTQESA 411
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQV---GRPSNMPQAQSVIDEITEEAKLYNRIYVASI 156
+ ++ ++NG L G+N+K++ + G +PQ ++I +LYN A I
Sbjct: 412 KRAITELNGYELMGKNLKLNMVSQEKNSNGTYIQIPQINNIIHHNYAPNQLYNAQAAAHI 471
Query: 157 H 157
H
Sbjct: 472 H 472
Score = 115 (45.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 34/131 (25%), Positives = 62/131 (47%)
Query: 37 PDVNSNSPLR-VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
P+ + S R V+V +S + E + F G + ++ + D +T++ KG +VE+
Sbjct: 257 PEPDEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQ 316
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVAS 155
E ++ ++G +L G+ I VH S P+ + + T + +RIYV
Sbjct: 317 KEMVDKAIA-LSGSVLDGQQILVH---------SIQPEKKVIKSNSTGSSGGESRIYVGY 366
Query: 156 IHPDLTEEDIK 166
IH + EE I+
Sbjct: 367 IHLSVAEEQIR 377
>ZFIN|ZDB-GENE-050626-88 [details] [associations]
symbol:rbmx2 "RNA binding motif protein, X-linked 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
Uniprot:F1RAH8
Length = 450
Score = 143 (55.4 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 35/100 (35%), Positives = 55/100 (55%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V++G +EL E I F +G I +IN+ D T K KGF F+ Y+ + L+++
Sbjct: 38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAK 146
NG+ + GR I+V HV RP P+ ID+IT++ +
Sbjct: 98 NGIKIKGRTIRVD--HVANYRP---PKDTDDIDDITKQLR 132
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 144 (55.7 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 35/126 (27%), Positives = 62/126 (49%)
Query: 40 NSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
N++ P ++VG +S E++ ++ AF PFG I + DP T K KG+ FV +
Sbjct: 89 NNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKS 148
Query: 98 AAQLSLEQMNGVMLGGRNIKVHFP-HVQVGRPSNMPQAQSVIDEITEEAKLYN-RIYVAS 155
A+ ++ MNG LG R+I+ ++ ++M DE+ ++ N +Y
Sbjct: 149 EAETAITAMNGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGG 208
Query: 156 IHPDLT 161
I+ L+
Sbjct: 209 INGALS 214
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG ++F E + F FGPI + + D TQ+ +GF F+ + PE A ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 67 MNGESLDGRQIRV 79
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 24/73 (32%), Positives = 48/73 (65%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SF+ E ++ AF +G I +++++ + T + +GF FV ++ P+ A+ +LE
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 106 MNGVMLGGRNIKV 118
MNG + GR I+V
Sbjct: 66 MNGKSVDGRTIRV 78
>UNIPROTKB|F1LMQ9 [details] [associations]
symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
Uniprot:F1LMQ9
Length = 327
Score = 139 (54.0 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 33/98 (33%), Positives = 53/98 (54%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G + +EL E I F +G I +IN+ D T K KGF F+ Y+ + L+++
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 96
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
NG+ + GR I+V HV R PQ +D++T E
Sbjct: 97 NGIKIKGRTIRVD--HVANYRA---PQESEDVDDVTRE 129
>RGD|1562693 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
Length = 328
Score = 139 (54.0 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 33/98 (33%), Positives = 53/98 (54%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G + +EL E I F +G I +IN+ D T K KGF F+ Y+ + L+++
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
NG+ + GR I+V HV R PQ +D++T E
Sbjct: 98 NGIKIKGRTIRVD--HVANYRA---PQESEDVDDVTRE 130
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG ++F E + F FGPI + + D TQ+ +GF F+ + PE A ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 67 MNGESLDGRQIRV 79
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG ++FE E+++ Q F +G + + + D +++ +GF FV ++ PE A+ ++
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ SN
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSN 87
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG ++F E + F FGPI + + D TQ+ +GF F+ + PE A ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 67 MNGESLDGRQIRV 79
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG ++F E + F FGPI + + D TQ+ +GF F+ + PE A ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 67 MNGESLDGRQIRV 79
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 139 (54.0 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG I F+L E + F +G I +N+ D T K KGFAF+ Y+ + L+++ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 107 NGVMLGGRNIKV 118
NG ++ GR IKV
Sbjct: 98 NGALVLGRTIKV 109
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 141 (54.7 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 36 TPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
T + SN ++VG +S E+ ++ + QAF FG + + WD T + +G+ FV +
Sbjct: 168 TKEDTSNH-FHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRD 226
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPS-NMPQAQSVI 138
A+ +L M+G LG R I+ ++ + Q G+PS QA S +
Sbjct: 227 RSDAEKALSSMDGEWLGSRAIRCNWAN-QKGQPSIAQQQAMSAV 269
Score = 106 (42.4 bits), Expect = 0.00017, P = 0.00017
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P+ N + +YVG + + ED +RQ F G ++++ + D K + FVEYD P
Sbjct: 80 PEPNKRA---LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDP 135
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPH 122
AA +++ +NG + I+V++ +
Sbjct: 136 GAADRAMQTLNGRRVHQSEIRVNWAY 161
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG ++F E + F FGPI + + D TQ+ +GF F+ + PE A ++
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 67 MNGESLDGRQIRV 79
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG + E+ E + + F P GPI SI + D +T++ G+A+V Y P A+ +LE M
Sbjct: 4 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 63
Query: 107 NGVMLGGRNIKV 118
N ++ GR +++
Sbjct: 64 NFDVINGRPVRI 75
>UNIPROTKB|F6XHX3 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
Ensembl:ENSCAFT00000017824 EMBL:AAEX03005604 Uniprot:F6XHX3
Length = 425
Score = 140 (54.3 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + ED +R F PFG + +++ + + T K A ++ E A
Sbjct: 244 SSGPMRLYVGSLHFNITEDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECA 303
Query: 100 QLSLEQMNGVMLGGRNIKV-HFPH-VQVGRPSNMPQAQSVID 139
+ +LEQ+NG L GR ++V H + G P + +D
Sbjct: 304 RRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGEQELD 345
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 141 (54.7 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 30/87 (34%), Positives = 51/87 (58%)
Query: 40 NSNSPL-RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
N+ PL ++VG +S E+ ++ +R AF F +K ++ WD T + +G+ FV +
Sbjct: 167 NTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSD 226
Query: 99 AQLSLEQMNGVMLGGRNIKVHFP-HVQ 124
A+L+L+ MNG L GR I+ ++ H Q
Sbjct: 227 AELALQTMNGEWLCGRAIRCNWASHKQ 253
Score = 125 (49.1 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 41/127 (32%), Positives = 69/127 (54%)
Query: 47 VYVGSISFELKEDTIRQAFLPFG-PIKSINMSWDPITQKHK-GF--AFVEYDIPEAAQLS 102
+YVG++ E+TI++ F G P+K+I + + K+K GF AF+EYD E A ++
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKI----LNDKNKAGFNYAFIEYDTNEVADMA 136
Query: 103 LEQMNGVMLGGRNIKVH--FPHVQV-GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
L +NG ++ IKV+ F + G P+N TEE L+N I+V + P+
Sbjct: 137 LNTLNGRLVDDVEIKVNWAFQSAAIAGNPNN-----------TEEP-LFN-IFVGDLSPE 183
Query: 160 LTEEDIK 166
+ +E ++
Sbjct: 184 VNDEGLR 190
>UNIPROTKB|J9P448 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
OMA:VTERLDG TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
EMBL:AAEX03005604 Ensembl:ENSCAFT00000048864 Uniprot:J9P448
Length = 458
Score = 140 (54.3 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+R+YVGS+ F + ED +R F PFG + +++ + + T K A ++ E A
Sbjct: 272 SSGPMRLYVGSLHFNITEDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECA 331
Query: 100 QLSLEQMNGVMLGGRNIKV-HFPH-VQVGRPSNMPQAQSVID 139
+ +LEQ+NG L GR ++V H + G P + +D
Sbjct: 332 RRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGEQELD 373
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 138 (53.6 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 34/114 (29%), Positives = 53/114 (46%)
Query: 19 YPFLSTPLYD-LKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSIN 75
YP P+ Q PI P P +++ + E + + Q FLPFG + S
Sbjct: 240 YPTAYAPISQAFPQQAPIIPQQQREGPEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAK 299
Query: 76 MSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ-VGRP 128
+ D T + K F FV +D P +AQ +++ MNG +G + +KV + RP
Sbjct: 300 VFVDRATNQSKCFGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRP 353
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 139 (54.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+VG+I +E E+ +++ F GP+ S+ + +D + K KGF F EY E A ++ +
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 107 NGVMLGGRNIKV 118
NG +GGR ++V
Sbjct: 78 NGYEIGGRTLRV 89
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 128 (50.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P+ S V+VG+I +E E+ ++ F GP+ S + +D T K KG+ F EY
Sbjct: 5 PVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKV 118
E A ++ +NG GR ++V
Sbjct: 65 QDQETALSAMRNLNGREFSGRALRV 89
Score = 35 (17.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 111 LGGRNIKVHFPHVQVGRPSNMP 132
LGG ++ P +Q P +P
Sbjct: 234 LGGMHVNGAPPMMQASMPGGVP 255
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P V N +YVG + ++ E + + + GP+ S+NM D +T H+GF FVE+
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 97 EAAQLSLEQMNGVMLGGRNIKVH 119
E A +++ +N + L G+ IKV+
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVN 87
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P V N +YVG + ++ E + + + GP+ S+NM D +T H+GF FVE+
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 97 EAAQLSLEQMNGVMLGGRNIKVH 119
E A +++ +N + L G+ IKV+
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVN 87
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 140 (54.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/99 (32%), Positives = 57/99 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY---DIPEAAQLS 102
++YVG++ F + E +RQ F FGP++ + + DP T + KGF F+++ + +AAQ++
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 103 LEQMNGVM-LGGRNIKVHFPHVQVGRPSNMPQAQSVIDE 140
L NG + + GR IKV +G + P++ D+
Sbjct: 326 L---NGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDD 361
>ZFIN|ZDB-GENE-030131-5228 [details] [associations]
symbol:rnps1 "RNA binding protein S1, serine-rich
domain" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5228 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 GeneTree:ENSGT00700000104336 CTD:10921
eggNOG:NOG331533 HOGENOM:HOG000044325 KO:K14325 EMBL:BC057251
EMBL:BC065953 IPI:IPI00490683 RefSeq:NP_956055.1 UniGene:Dr.75879
ProteinModelPortal:Q6PG31 STRING:Q6PG31 Ensembl:ENSDART00000128731
GeneID:327020 KEGG:dre:327020 InParanoid:Q6PG31 NextBio:20809844
Bgee:Q6PG31 Uniprot:Q6PG31
Length = 283
Score = 135 (52.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQK-HKGFAFVEYDIPEAA 99
S P ++Y+G ++ + +D I++ F +G IK I+M D + KG+A+VEY+ PE A
Sbjct: 133 SPKPTKLYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYESPEDA 192
Query: 100 QLSLEQMNGVMLGGRNI 116
Q +L+ M+G + G+ I
Sbjct: 193 QKALKHMDGGQIDGQEI 209
>POMBASE|SPAC644.16 [details] [associations]
symbol:SPAC644.16 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
Length = 422
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+I +E+ E+ + F GP+KS + DP + + KG+ F EY P A ++ +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 107 NGVMLGGRNIKVHFP 121
N G R ++V FP
Sbjct: 67 NNYDAGTRRLRVDFP 81
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG ++F E + F FGPI + + D TQ+ +GF F+ + PE A +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 106 MNGVMLGGRNIKV 118
MNG L GR I+V
Sbjct: 67 MNGESLDGRQIRV 79
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 124 (48.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V++ + E + + Q FLPFG + S + D T + K F FV +D P +AQ +++ M
Sbjct: 359 VFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQAM 418
Query: 107 NGVMLGGRNIKVHFPHVQ-VGRP 128
NG +G + +KV + RP
Sbjct: 419 NGFQIGMKRLKVQLKRPKDANRP 441
Score = 35 (17.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 34 PITPDVNSNSP 44
PITP +N+P
Sbjct: 248 PITPPSGANTP 258
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++ +SF E T+R AF FG + + + D I+++ KG+AF+EY EAA +L++
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 106 MNGVMLGGRNIKV 118
MNG ++ G I V
Sbjct: 343 MNGKIINGWMIVV 355
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 142 (55.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 34 PITPDVNSNSPLRVYVGSISFELK---EDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
PI P+ + PL++Y+G + L E ++Q F PFG I + + DP T K KGF F
Sbjct: 578 PIDPN---DIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGF 634
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
+++ A +L MNG+ + GR IKV +
Sbjct: 635 IQFHKASEAIEALTVMNGMEVAGREIKVGY 664
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 142 (55.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 34 PITPDVNSNSPLRVYVGSISFELK---EDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
PI P+ + PL++Y+G + L E ++Q F PFG I + + DP T K KGF F
Sbjct: 578 PIDPN---DIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGF 634
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
+++ A +L MNG+ + GR IKV +
Sbjct: 635 IQFHKASEAIEALTVMNGMEVAGREIKVGY 664
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 125 (49.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++ + E + I Q FLPFG + S + D T + K F FV +D P +AQ +++ M
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 107 NGVMLGGRNIKVHFPHVQ-VGRP 128
NG +G + +KV + RP
Sbjct: 439 NGFQIGMKRLKVQLKRPKDANRP 461
Score = 34 (17.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 22 LSTPLYDLKQVGPITPDVNSNSP 44
++TP+ Q+ PIT +++P
Sbjct: 253 IATPI---TQINPITSSSGTSTP 272
>POMBASE|SPBC887.05c [details] [associations]
symbol:cwf29 "RNA-binding protein Cwf29" species:4896
"Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
Uniprot:O94290
Length = 217
Score = 130 (50.8 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G++ F+L ED I F FG IN+ D T K KGFAF++Y+ + L+++ M
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 107 NGVMLGGRNIKV-HFPHVQVGRPSNMP 132
V L R ++V H +V + P
Sbjct: 93 TNVKLLDRLVRVDHVASYKVPQKEKEP 119
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G ++F E + F FGPI + + D TQ+ +GF F+ + PE A ++ M
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 107 NGVMLGGRNIKV 118
NG L GR I+V
Sbjct: 68 NGKSLDGRQIRV 79
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S VYVG+ F+ ED + F G + ++ + D T + +GFAFVE+ AAQ +
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 103 LEQMNGVMLGGRNIKVH 119
++Q NGV GR ++V+
Sbjct: 62 VDQFNGVDFNGRALRVN 78
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S VYVG+ F+ ED + F G + ++ + D T + +GFAFVE+ AAQ +
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 103 LEQMNGVMLGGRNIKVH 119
++Q NGV GR ++V+
Sbjct: 62 VDQFNGVDFNGRALRVN 78
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 130 (50.8 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 23/73 (31%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +S++ E ++ +AF +G I +++ D T + +GF FV ++ PE A+ ++
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 106 MNGVMLGGRNIKV 118
MNG + GR I+V
Sbjct: 84 MNGKQVDGRMIRV 96
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 136 (52.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N VYVG++ E + + GP+ +++M D +++ H+G+ FVE+D PE+A
Sbjct: 9 NKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADY 68
Query: 102 SLEQMNGVMLGGRNIKVH 119
+ +NG+ + G+ I+V+
Sbjct: 69 AARALNGIRVFGKVIRVN 86
>UNIPROTKB|F1PRG0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
Length = 326
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G + +EL E I F +G I +IN+ D T K KGF F+ Y+ + L+++
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 96
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
NG+ + GR I+V HV R P+ +D++T+E
Sbjct: 97 NGIKIKGRTIRVD--HVSNYRA---PKDSEEMDDVTKE 129
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 135 (52.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 103 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P + + Q +++ ++ N
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNC 222
Query: 150 RIYVASIHPDLTEE 163
+Y I LT++
Sbjct: 223 TVYCGGIASGLTDQ 236
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + P KG++FV +
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTH 267
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYW 291
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 103 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P + + Q +++ ++ N
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNC 222
Query: 150 RIYVASIHPDLTEE 163
+Y I LT++
Sbjct: 223 TVYCGGIASGLTDQ 236
Score = 107 (42.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + P KG++FV +
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTH 267
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYW 291
>UNIPROTKB|J9P250 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
Length = 341
Score = 134 (52.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G + +EL E I F +G I +IN+ D T K KGF F+ Y+ + L+++
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
NG+ + GR I+V HV R P+ +D++T+E
Sbjct: 98 NGIKIKGRTIRVD--HVSNYRA---PKDSEEMDDVTKE 130
>GENEDB_PFALCIPARUM|PFE0160c [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AL844504
HSSP:Q61474 RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468
IntAct:Q8I468 MINT:MINT-1654287 PRIDE:Q8I468
EnsemblProtists:PFE0160c:mRNA GeneID:812926 KEGG:pfa:PFE0160c
EuPathDB:PlasmoDB:PF3D7_0503300 HOGENOM:HOG000284061 OMA:ANTESTQ
ProtClustDB:CLSZ2848078 Uniprot:Q8I468
Length = 308
Score = 133 (51.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 37 PDVNS-NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE-YD 94
P +N N P+ + + + F+ +R+ F FG IK + + D T++ +GF FVE YD
Sbjct: 3 PYINQKNQPMSLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYD 62
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGR--PSNM 131
+A Q +L++MNG + G I+V Q GR P +M
Sbjct: 63 AKDAEQ-ALKEMNGSEIDGSRIEVFV--AQKGRSDPRHM 98
>UNIPROTKB|Q8I468 [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HSSP:Q61474
RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468 IntAct:Q8I468
MINT:MINT-1654287 PRIDE:Q8I468 EnsemblProtists:PFE0160c:mRNA
GeneID:812926 KEGG:pfa:PFE0160c EuPathDB:PlasmoDB:PF3D7_0503300
HOGENOM:HOG000284061 OMA:ANTESTQ ProtClustDB:CLSZ2848078
Uniprot:Q8I468
Length = 308
Score = 133 (51.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 37 PDVNS-NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE-YD 94
P +N N P+ + + + F+ +R+ F FG IK + + D T++ +GF FVE YD
Sbjct: 3 PYINQKNQPMSLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYD 62
Query: 95 IPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGR--PSNM 131
+A Q +L++MNG + G I+V Q GR P +M
Sbjct: 63 AKDAEQ-ALKEMNGSEIDGSRIEVFV--AQKGRSDPRHM 98
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 103 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P + + Q +++ ++ N
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNC 222
Query: 150 RIYVASIHPDLTEE 163
+Y I LT++
Sbjct: 223 TVYCGGIASGLTDQ 236
Score = 107 (42.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + P KG++FV +
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTH 267
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYW 291
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 103 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA---QSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P + + Q +++ ++ N
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNC 222
Query: 150 RIYVASIHPDLTEE 163
+Y I LT++
Sbjct: 223 TVYCGGIASGLTDQ 236
Score = 107 (42.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + P KG++FV +
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTH 267
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYW 291
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 136 (52.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 29/98 (29%), Positives = 57/98 (58%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
++++ ++VG +S E+ ++ + QAF FG + + WD T + +G+ FV + A
Sbjct: 177 DTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADA 236
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSV 137
+ +L M+G LG R I+ ++ + Q G+PS + Q Q++
Sbjct: 237 EKALTSMDGEWLGSRAIRCNWAN-QKGQPS-ISQQQAM 272
>UNIPROTKB|Q9Y388 [details] [associations]
symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
Length = 322
Score = 133 (51.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+++G + +EL E I F +G I +IN+ D T K KGF F+ Y+ + L+++
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEE 144
NG+ + GR I+V HV R P+ ID++T +
Sbjct: 98 NGIKIKGRTIRVD--HVSNYRA---PKDSEEIDDVTRQ 130
>POMBASE|SPBC3B9.11c [details] [associations]
symbol:ctf1 "mRNA cleavage and polyadenylation
specificity factor complex subunit Ctf1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IC] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC3B9.11c
GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0006378 GenomeReviews:CU329671_GR GO:GO:0003723
eggNOG:COG0724 GO:GO:0005847 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 PIR:T40350 RefSeq:NP_596669.1
ProteinModelPortal:O43040 STRING:O43040 EnsemblFungi:SPBC3B9.11c.1
GeneID:2541018 KEGG:spo:SPBC3B9.11c OMA:QLAYAIF OrthoDB:EOG4GQTF6
NextBio:20802132 Uniprot:O43040
Length = 363
Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+VG+I +++ E + + F GP+K+ + DP T KG+ F E+ E +++ ++
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHP 158
N LG R I+V FP R + + D E+ + Y + P
Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQSYEYTERT-DRYMEQQNAHESSYNSRFIP 119
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G ++FE ED + QAF +G I + + D T++ +GF FV ++ + A+ ++
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 106 MNGVMLGGRNIKV 118
MNG + GR I+V
Sbjct: 66 MNGKSVDGRQIRV 78
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/73 (30%), Positives = 46/73 (63%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G ++F+ E+++ Q F +G I + + D T++ +GF FV ++ P+ A+ ++
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 106 MNGVMLGGRNIKV 118
MNG + GR I+V
Sbjct: 66 MNGKAVDGRQIRV 78
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/89 (29%), Positives = 52/89 (58%)
Query: 33 GPITPDVNSNSPL--RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAF 90
GP+T + S + +++VG +S+ + +++QAF FG + + D T + +GF F
Sbjct: 21 GPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGF 80
Query: 91 VEYDIPEAAQLSLEQMNGVMLGGRNIKVH 119
V + ++A ++++M+G L GR I+V+
Sbjct: 81 VSFSCEDSANNAIKEMDGKELNGRQIRVN 109
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VYVG+ F+ E+ + F G I ++ + D T + +GFAF+E+ +AQ ++EQM
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 107 NGVMLGGRNIKVH 119
NG GR ++V+
Sbjct: 67 NGAEFNGRPLRVN 79
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 135 (52.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 28 DLKQVGPITPDVNSNSPLR-VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHK 86
DLK+ P + P + ++V +++E E I++ F +GPIK +++ D +T K K
Sbjct: 120 DLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPK 179
Query: 87 GFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
G+AF+EY + + +Q +G + GR + V
Sbjct: 180 GYAFIEYMHTRDMKAAYKQADGQKIDGRRVLV 211
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 134 (52.2 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 86 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 145
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQ---AQSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P + + Q +++ ++ N
Sbjct: 146 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC 205
Query: 150 RIYVASIHPDLTEE 163
+Y I LT++
Sbjct: 206 TVYCGGIASGLTDQ 219
Score = 112 (44.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 34/127 (26%), Positives = 61/127 (48%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P +YVG++S ++ E I Q F GP KS M + + + + FVE+ A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDA 61
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
+L MNG + G+ +KV++ + P +Q ++ + ++V + P+
Sbjct: 62 AAALAAMNGRKILGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPE 107
Query: 160 LTEEDIK 166
+T EDIK
Sbjct: 108 ITTEDIK 114
Score = 107 (42.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + P KG++FV +
Sbjct: 197 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTH 250
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 251 ESAAHAIVSVNGTTIEGHVVKCYW 274
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 137 (53.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P ++YVG I ++ ED IR F G I ++ P G AF+ +D + A+ +L
Sbjct: 160 PNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRAL 219
Query: 104 EQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEE 163
+ +G R + + +V+ PS +P+ ++ E YNR+Y+ ++ D TE
Sbjct: 220 A-FDRAAMGDRYLTIQ-QYVKTTTPS-IPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTER 276
Query: 164 DIK 166
DI+
Sbjct: 277 DIR 279
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 86 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 145
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQ---AQSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P + + Q +++ ++ N
Sbjct: 146 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC 205
Query: 150 RIYVASIHPDLTEE 163
+Y I LT++
Sbjct: 206 TVYCGGIASGLTDQ 219
Score = 112 (44.5 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 34/127 (26%), Positives = 61/127 (48%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P +YVG++S ++ E I Q F GP KS M + + + + FVE+ A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDA 61
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD 159
+L MNG + G+ +KV++ + P +Q ++ + ++V + P+
Sbjct: 62 AAALAAMNGRKILGKEVKVNW--------ATTPSSQK------KDTSNHFHVFVGDLSPE 107
Query: 160 LTEEDIK 166
+T EDIK
Sbjct: 108 ITTEDIK 114
Score = 107 (42.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + P KG++FV +
Sbjct: 197 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTH 250
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 251 ESAAHAIVSVNGTTIEGHVVKCYW 274
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 134 (52.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 102 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 161
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQ---AQSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P + + Q +++ ++ N
Sbjct: 162 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC 221
Query: 150 RIYVASIHPDLTEE 163
+Y I LT++
Sbjct: 222 TVYCGGIASGLTDQ 235
Score = 107 (42.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + P KG++FV +
Sbjct: 213 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTH 266
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 267 ESAAHAIVSVNGTTIEGHVVKCYW 290
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 129 (50.5 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 28/98 (28%), Positives = 52/98 (53%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + D S+ P + + ++ + + + +R +F FGP+K I + + T + +GF FV+Y
Sbjct: 36 PSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKY 95
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
E A ++++MN ++GGR I + F P M
Sbjct: 96 RYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTPQEM 133
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 134 (52.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 103 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQ---AQSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P + + Q +++ ++ N
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC 222
Query: 150 RIYVASIHPDLTEE 163
+Y I LT++
Sbjct: 223 TVYCGGIASGLTDQ 236
Score = 107 (42.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + P KG++FV +
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTH 267
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYW 291
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 134 (52.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 103 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQ---AQSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P + + Q +++ ++ N
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC 222
Query: 150 RIYVASIHPDLTEE 163
+Y I LT++
Sbjct: 223 TVYCGGIASGLTDQ 236
Score = 107 (42.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + P KG++FV +
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTH 267
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYW 291
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 134 (52.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 35/134 (26%), Positives = 65/134 (48%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 103 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQ---AQSVIDEITEEAKLYN- 149
A+ ++ M G LGGR I+ ++ + P + + Q +++ ++ N
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC 222
Query: 150 RIYVASIHPDLTEE 163
+Y I LT++
Sbjct: 223 TVYCGGIASGLTDQ 236
Score = 107 (42.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 39 VNSNSPLR--VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + P KG++FV +
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTH 267
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 268 ESAAHAIVSVNGTTIEGHVVKCYW 291
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG + E+ E + + F P GPI SI + D IT++ G+A+V Y P A+ +LE +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 107 NGVMLGGRNIKV 118
N ++ GR +++
Sbjct: 64 NFDVIKGRPVRI 75
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P + ++++ V+VG +S E+ + I+ AF PFG I + D T K KG+ FV +
Sbjct: 47 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 106
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVH 119
A+ ++ M G LGGR I+ +
Sbjct: 107 YNKLDAENAIVHMGGQWLGGRQIRTN 132
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFP 121
MNG + GR I+V P
Sbjct: 67 MNGKSVDGRQIRVDQP 82
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 136 (52.9 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R+ V +I F L ++ ++ F PFG I+ +++ D + KGF +++Y P +A+ +LE+
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDD-QNRSKGFGYIQYRNPISARNALEK 399
Query: 106 MNGVMLGGRNIKV 118
MNG L GRN++V
Sbjct: 400 MNGFDLAGRNMRV 412
Score = 107 (42.7 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 30/120 (25%), Positives = 61/120 (50%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V ++ L + F GP++ + D I+ + KG A+VE+ ++ Q ++ +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-L 300
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+G L G + V + R + +A + + E ++R+ V++IH +LT+ED+K
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAR--EAAELARAASAEIP-FHRLCVSNIHFNLTDEDVK 357
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 126 (49.4 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 134 (52.2 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 30/134 (22%), Positives = 66/134 (49%)
Query: 34 PITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
P+ ++++ V+VG +S ++ + ++ F FG + + D TQK KG+ FV +
Sbjct: 214 PMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSF 273
Query: 94 DIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNR-IY 152
+ A+ ++ MNG +G R ++ ++ + S + + +++ K N +Y
Sbjct: 274 PNKQNAENAIAGMNGKWIGKRAVRTNWA---ARKNSEENRDKLTFEQVFNSTKADNTSVY 330
Query: 153 VASIHPDLTEEDIK 166
V +I T+ D++
Sbjct: 331 VGNISQQTTDADLR 344
>DICTYBASE|DDB_G0294559 [details] [associations]
symbol:DDB_G0294559 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
Length = 348
Score = 132 (51.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 29/84 (34%), Positives = 50/84 (59%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+SP +YVG ++++L E + F +G I N+ + T + +GF FV YD ++
Sbjct: 30 SHSPY-IYVGGLNYDLNEGDVIAIFSQYGEISECNLVRNKETGRSQGFCFVGYDQQKSTV 88
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQ 124
L+++ +NG+ L G+ IKV HV+
Sbjct: 89 LAVDNLNGINLLGKTIKVD--HVK 110
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 136 (52.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 35/130 (26%), Positives = 66/130 (50%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + + +++ ++ + + + F FGPI S ++ DP Q KG+ FV+YD
Sbjct: 125 PSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQS-KGYGFVQYDTD 183
Query: 97 EAAQLSLEQMNGVMLGGRNIKVH-FPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVAS 155
EAAQ +++++NG++L + + V F H PS E+ K N +YV +
Sbjct: 184 EAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG------------EKVKFTN-VYVKN 230
Query: 156 IHPDLTEEDI 165
+ L++E++
Sbjct: 231 LSESLSDEEL 240
Score = 108 (43.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG + + + + +AF G + S+ + D T++ G+ +V Y P+ A +L ++
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 107 NGVMLGGRNIKVHF 120
N + L GR I+V +
Sbjct: 107 NFMALNGRAIRVMY 120
Score = 108 (43.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YV ++ + +D +R+ F PFG I S + DP + +G FV + PE A ++ +M
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEM 387
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQAQ 135
NG M+ + + V + R + + QAQ
Sbjct: 388 NGKMIVTKPLYVALAQRKEDRKARL-QAQ 415
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG + E+ E + + F P GPI SI + D IT++ G+A+V Y P A+ +LE +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 107 NGVMLGGRNIKV 118
N ++ GR +++
Sbjct: 64 NFDVIKGRPVRI 75
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG + E+ E + + F P GPI SI + D IT++ G+A+V Y P A+ +LE +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 107 NGVMLGGRNIKV 118
N ++ GR +++
Sbjct: 64 NFDVIKGRPVRI 75
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG + E+ E + + F P GPI SI + D IT++ G+A+V Y P A+ +LE +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 107 NGVMLGGRNIKV 118
N ++ GR +++
Sbjct: 64 NFDVIKGRPVRI 75
>GENEDB_PFALCIPARUM|PF14_0656 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor,
putative" species:5833 "Plasmodium falciparum" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 124 (48.7 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 29 LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
L+ P+ +S+ R+Y+ ++ +LK++ I+ FG +K+ N+ D T +KG+
Sbjct: 573 LRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGLNKGY 632
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNI 116
F EY+ QL++ +NG + G +NI
Sbjct: 633 GFFEYEDSSCTQLAIHALNGFVCG-QNI 659
Score = 37 (18.1 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 133 QAQSVIDEITEEAKLYNRI 151
Q + ++ E+ EEA+ Y +
Sbjct: 749 QYEEILKEVKEEAEKYGTL 767
>UNIPROTKB|Q8IKE9 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 124 (48.7 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 29 LKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
L+ P+ +S+ R+Y+ ++ +LK++ I+ FG +K+ N+ D T +KG+
Sbjct: 573 LRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNTGLNKGY 632
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNI 116
F EY+ QL++ +NG + G +NI
Sbjct: 633 GFFEYEDSSCTQLAIHALNGFVCG-QNI 659
Score = 37 (18.1 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 133 QAQSVIDEITEEAKLYNRI 151
Q + ++ E+ EEA+ Y +
Sbjct: 749 QYEEILKEVKEEAEKYGTL 767
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 126 (49.4 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 126 (49.4 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 126 (49.4 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 126 (49.4 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 126 (49.4 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 126 (49.4 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 126 (49.4 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 126 (49.4 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ DT+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQM--ARYGRP 95
>FB|FBgn0033378 [details] [associations]
symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
dorsal/ventral axis specification" evidence=IMP] [GO:0007314
"oocyte anterior/posterior axis specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
nucleus migration involved in oocyte dorsal/ventral axis
specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007317 "regulation of pole plasm oskar mRNA localization"
evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
[GO:0046595 "establishment of pole plasm mRNA localization"
evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IMP]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
Length = 165
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
++V SI E +ED I++ F +G IK+I+++ D T KG+A VEY+ + A + E +
Sbjct: 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134
Query: 107 NGVMLGGRNIKVHFPHVQ 124
NG + G+ I+V + V+
Sbjct: 135 NGAEIMGQTIQVDWCFVK 152
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 132 (51.5 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 32/104 (30%), Positives = 53/104 (50%)
Query: 19 YPFLS-TPL-YDLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSI 74
YP + TP+ + + Q P+ P +++ + E + + Q FLPFG I S
Sbjct: 305 YPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISS 364
Query: 75 NMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ D T + K F FV +D P +AQ +++ MNG +G + +KV
Sbjct: 365 KVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKV 408
>UNIPROTKB|F1RXX7 [details] [associations]
symbol:MKI67 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AEMK01028690 EMBL:CU655817
Ensembl:ENSSSCT00000017130 Uniprot:F1RXX7
Length = 294
Score = 129 (50.5 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 32/101 (31%), Positives = 51/101 (50%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P+ +P +YVG + L E IR F FG + + +S T KG+ FVE++
Sbjct: 37 PEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESE 96
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF-P----HVQVGRPSNMP 132
+ A+++ E MN + G R +K H P H ++ R +MP
Sbjct: 97 DVARIAAETMNNYLFGERLLKCHIIPPEKVHEELFREWHMP 137
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V ++ P ++++G ++ E E + F +G I + + D T K +GFAFV ++ P
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHFPHVQVGRPS 129
A+ + MNG L G+ IKV Q +PS
Sbjct: 62 AKDAARDMNGKSLDGKAIKVE----QATKPS 88
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E + Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++YVG++++ + + + + F +G +KS + D T + +GF FVE + AQ ++
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 106 MNGVMLGGRNIKVH 119
+NG + GRN+ V+
Sbjct: 64 LNGKEMDGRNLMVN 77
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG +S+E ED +R+ F G + S+++ DP T + KG +V E A+ ++E +
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 107 NGVMLGGRNIKVHF--PHVQVGRPS 129
+G +L R I V P Q RP+
Sbjct: 65 DGALLRNRVITVSVARPQKQATRPA 89
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG +S+E ED +R+ F G + S+++ DP T + KG +V E A+ ++E +
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 107 NGVMLGGRNIKVHF--PHVQVGRPS 129
+G +L R I V P Q RP+
Sbjct: 65 DGALLRNRVITVSVARPQKQATRPA 89
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E + Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E + Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 132 (51.5 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 32/104 (30%), Positives = 53/104 (50%)
Query: 19 YPFLS-TPL-YDLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSI 74
YP + TP+ + + Q P+ P +++ + E + + Q FLPFG I S
Sbjct: 370 YPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISS 429
Query: 75 NMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ D T + K F FV +D P +AQ +++ MNG +G + +KV
Sbjct: 430 KVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKV 473
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 132 (51.5 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 32/104 (30%), Positives = 53/104 (50%)
Query: 19 YPFLS-TPL-YDLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSI 74
YP + TP+ + + Q P+ P +++ + E + + Q FLPFG I S
Sbjct: 370 YPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISS 429
Query: 75 NMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ D T + K F FV +D P +AQ +++ MNG +G + +KV
Sbjct: 430 KVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 473
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 124 (48.7 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ S+
Sbjct: 67 MNGKSVDGRQIRVD----QAGKSSD 87
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 132 (51.5 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 32/104 (30%), Positives = 53/104 (50%)
Query: 19 YPFLS-TPL-YDLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSI 74
YP + TP+ + + Q P+ P +++ + E + + Q FLPFG I S
Sbjct: 374 YPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISS 433
Query: 75 NMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ D T + K F FV +D P +AQ +++ MNG +G + +KV
Sbjct: 434 KVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKV 477
>UNIPROTKB|Q3SZM1 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9913 "Bos taurus" [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000794
GO:GO:0010923 EMBL:BC102791 IPI:IPI00706135 RefSeq:NP_001029526.1
UniGene:Bt.53167 HSSP:Q9BYG3 ProteinModelPortal:Q3SZM1 SMR:Q3SZM1
STRING:Q3SZM1 Ensembl:ENSBTAT00000031564 GeneID:509598
KEGG:bta:509598 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 InParanoid:Q3SZM1 KO:K14838 OMA:QVRKRIT
OrthoDB:EOG4MKNGX NextBio:20869038 InterPro:IPR021043 Pfam:PF12196
Uniprot:Q3SZM1
Length = 296
Score = 128 (50.1 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
+P +YVG + L E IR F FG + +S T KG+ FVE++ + A+++
Sbjct: 43 TPGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIA 102
Query: 103 LEQMNGVMLGGRNIKVHF-P----HVQVGRPSNMP 132
E MN + G R +K HF P H ++ R +MP
Sbjct: 103 AETMNNYLFGERLLKCHFIPPEKVHEELFREWHMP 137
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 133 (51.9 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 35/121 (28%), Positives = 67/121 (55%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+ ++ ++ ED +R+ F FG I S+ ++ D + +G+AFV +D PE A+ + E +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETV 261
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNM-PQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
NG G + + V + R + Q + +E AK+ N IYV +++ +TEE++
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSN-IYVKNVNVAVTEEEL 320
Query: 166 K 166
+
Sbjct: 321 R 321
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 130 (50.8 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V ++ P ++++G ++ E E ++ F +G I + + D T K +GFAF+ ++ P
Sbjct: 2 VEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKV 118
A+ ++ MNG L G+ IKV
Sbjct: 62 AKAAVRDMNGKSLDGKAIKV 81
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 130 (50.8 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GPI+ N VYVG + ++ E + + FL GP+ + +M D +T +H+G+ FVE
Sbjct: 4 GPIS---ERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVH 119
+ E A +++ MN + L G+ I+V+
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 103 (41.3 bits), Expect = 0.00056, P = 0.00056
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIP 96
DV +N +++G++ E+ E + F FG I ++ + DP T KG+AF+ +
Sbjct: 97 DVGAN----IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
+A+ ++E MNG L R I V +
Sbjct: 153 DASDAAIEAMNGQYLCNRPITVSY 176
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/104 (29%), Positives = 58/104 (55%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PD N+ L V+ +S E +R+ F +GP+ +N+ +D T + +GFAFV ++
Sbjct: 14 PD--PNTCLGVF--GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 69
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF----------PHVQVGRPSN 130
+ ++ ++E+ NG+ L GR I+V + P + +GRP++
Sbjct: 70 DDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 113
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/104 (29%), Positives = 58/104 (55%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PD N+ L V+ +S E +R+ F +GP+ +N+ +D T + +GFAFV ++
Sbjct: 14 PD--PNTCLGVF--GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 69
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF----------PHVQVGRPSN 130
+ ++ ++E+ NG+ L GR I+V + P + +GRP++
Sbjct: 70 DDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 113
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++V +S + ++RQ F PFG IK + D TQ+ KGF F+ +D + A+ +L+
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 106 MNGVMLGGRNIKV 118
++G ++ GR I V
Sbjct: 68 LDGKIVDGRLIFV 80
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V +I E ED + F +G IK+I+++ D T KG+A VEY+ + A +++Q
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 107 NGVMLGGRNIKVHFPHVQ 124
N L G+N+KV + V+
Sbjct: 117 NDTDLLGQNVKVDWCFVK 134
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 121 (47.7 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 26/94 (27%), Positives = 51/94 (54%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R++V ++ + E+ + + F +GP+ ++ D +T+K KGFAFV + PE A + +
Sbjct: 364 RLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 423
Query: 106 MNGVMLGGRNIKVHFPHV---QVGRPSNMPQAQS 136
++G + GR + V P + +N P++ S
Sbjct: 424 VDGQVFQGRMLHV-LPSTIKKEASEDANAPESSS 456
Score = 106 (42.4 bits), Expect = 0.00040, P = 0.00040
Identities = 29/103 (28%), Positives = 55/103 (53%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHK-------GFAFVEYDIPEAA 99
+++ +++F+ E+T++ F G +KS ++S +K+K GF FVEY PE A
Sbjct: 692 LFIKNLNFDTTEETLKGVFSKVGAVKSCSIS----KKKNKAGALLSMGFGFVEYRKPEQA 747
Query: 100 QLSLEQMNGVMLGGRNIKVHFPH------VQVGRPSNMPQAQS 136
Q +L+Q+ G ++ G ++V + GR + P+ Q+
Sbjct: 748 QKALKQLQGHVVDGHKLEVRISERATKSALNSGRHKHSPRRQT 790
Score = 38 (18.4 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 129 SNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+ M + + +E EE+ +++ +++ D TEE +K
Sbjct: 670 AKMEEEEEEEEEEEEESLPGCTLFIKNLNFDTTEETLK 707
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 130 (50.8 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GPI+ N VYVG + ++ E + + FL GP+ + +M D +T +H+G+ FVE
Sbjct: 4 GPIS---ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVH 119
+ E A +++ MN + L G+ I+V+
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 103 (41.3 bits), Expect = 0.00060, P = 0.00060
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIP 96
DV +N +++G++ E+ E + F FG I ++ + DP T KG+AF+ +
Sbjct: 97 DVGAN----IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
+A+ ++E MNG L R I V +
Sbjct: 153 DASDAAIEAMNGQYLCNRPITVSY 176
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 130 (50.8 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GPI+ N VYVG + ++ E + + FL GP+ + +M D +T +H+G+ FVE
Sbjct: 4 GPIS---ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVH 119
+ E A +++ MN + L G+ I+V+
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 103 (41.3 bits), Expect = 0.00061, P = 0.00061
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIP 96
DV +N +++G++ E+ E + F FG I ++ + DP T KG+AF+ +
Sbjct: 97 DVGAN----IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
+A+ ++E MNG L R I V +
Sbjct: 153 DASDAAIEAMNGQYLCNRPITVSY 176
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 130 (50.8 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GPI+ N VYVG + ++ E + + FL GP+ + +M D +T +H+G+ FVE
Sbjct: 4 GPIS---ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVH 119
+ E A +++ MN + L G+ I+V+
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 103 (41.3 bits), Expect = 0.00061, P = 0.00061
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIP 96
DV +N +++G++ E+ E + F FG I ++ + DP T KG+AF+ +
Sbjct: 97 DVGAN----IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
+A+ ++E MNG L R I V +
Sbjct: 153 DASDAAIEAMNGQYLCNRPITVSY 176
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 130 (50.8 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GPI+ N VYVG + ++ E + + FL GP+ + +M D +T +H+G+ FVE
Sbjct: 4 GPIS---ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVH 119
+ E A +++ MN + L G+ I+V+
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 103 (41.3 bits), Expect = 0.00061, P = 0.00061
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIP 96
DV +N +++G++ E+ E + F FG I ++ + DP T KG+AF+ +
Sbjct: 97 DVGAN----IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
+A+ ++E MNG L R I V +
Sbjct: 153 DASDAAIEAMNGQYLCNRPITVSY 176
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 130 (50.8 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GPI+ N VYVG + ++ E + + FL GP+ + +M D +T +H+G+ FVE
Sbjct: 4 GPIS---ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVH 119
+ E A +++ MN + L G+ I+V+
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 103 (41.3 bits), Expect = 0.00061, P = 0.00061
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIP 96
DV +N +++G++ E+ E + F FG I ++ + DP T KG+AF+ +
Sbjct: 97 DVGAN----IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
+A+ ++E MNG L R I V +
Sbjct: 153 DASDAAIEAMNGQYLCNRPITVSY 176
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 130 (50.8 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GPI+ N VYVG + ++ E + + FL GP+ + +M D +T +H+G+ FVE
Sbjct: 4 GPIS---ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVH 119
+ E A +++ MN + L G+ I+V+
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 103 (41.3 bits), Expect = 0.00061, P = 0.00061
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIP 96
DV +N +++G++ E+ E + F FG I ++ + DP T KG+AF+ +
Sbjct: 97 DVGAN----IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
+A+ ++E MNG L R I V +
Sbjct: 153 DASDAAIEAMNGQYLCNRPITVSY 176
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 130 (50.8 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GPI+ N VYVG + ++ E + + FL GP+ + +M D +T +H+G+ FVE
Sbjct: 4 GPIS---ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVH 119
+ E A +++ MN + L G+ I+V+
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 103 (41.3 bits), Expect = 0.00061, P = 0.00061
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPI-KSINMSWDPITQKHKGFAFVEYDIP 96
DV +N +++G++ E+ E + F FG I ++ + DP T KG+AF+ +
Sbjct: 97 DVGAN----IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
+A+ ++E MNG L R I V +
Sbjct: 153 DASDAAIEAMNGQYLCNRPITVSY 176
>WB|WBGene00006697 [details] [associations]
symbol:uaf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
Uniprot:P90978
Length = 496
Score = 131 (51.2 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 34/141 (24%), Positives = 68/141 (48%)
Query: 27 YDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHK 86
+D+ P++ V +S ++++G + L ED +++ FGP+K+ +++ D K
Sbjct: 274 FDMNSRMPVSTIV-VDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSK 331
Query: 87 GFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPS-NMPQAQSVIDEITEEA 145
G+AF EY P ++ +NG+ LG + + V R + N+P + S I I
Sbjct: 332 GYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNTNLPNSASAIAGIDLSQ 391
Query: 146 KLYNRIYVASIHPDLTEEDIK 166
+ + +TE+++K
Sbjct: 392 GAGRATEILCLMNMVTEDELK 412
>UNIPROTKB|E2RFH4 [details] [associations]
symbol:LOC479820 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
EMBL:AAEX03004472 Ensembl:ENSCAFT00000028470 Uniprot:E2RFH4
Length = 733
Score = 133 (51.9 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 36/151 (23%), Positives = 77/151 (50%)
Query: 19 YPFLSTPLYDLKQVGP-ITPDVNSNSPLR------VYVGSISFELKEDTIRQAFLPFGPI 71
+PF S + + P +T ++N ++ VY G S +++ F FGPI
Sbjct: 436 FPF-SIVQFSFEPFSPSLTEEMNKRMRIKWTEMSTVYAGPFSKNCNLRALKRLFKSFGPI 494
Query: 72 KSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
+S+ + + + H+ ++Y++ EAAQL++E ++GV++ G IKV P ++ N
Sbjct: 495 RSMTL----VLETHQPHLCIQYEVLEAAQLAIESLDGVLVEGACIKVQRPVTELTLDCN- 549
Query: 132 PQAQSVIDEITEEAKLYNRIYVASIHPDLTE 162
++++E+ ++++ IY++ + E
Sbjct: 550 ----TLVNELEQDSENRGTIYLSGVSETFKE 576
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 128 (50.1 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 34/122 (27%), Positives = 65/122 (53%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY+ + ++ ++ ++ F FGP S+ + D + K KGF FV ++ E AQ ++++M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQA--QSVIDEITEEAKLYNRIYVASIHPDLTEED 164
NG L G+ I V +V R + + + Q D IT ++ N +YV ++ + +E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRY-QVVN-LYVKNLDDGIDDER 309
Query: 165 IK 166
++
Sbjct: 310 LR 311
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 31/130 (23%), Positives = 64/130 (49%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + + ++V ++ + + FG I S N+ D KG+ FV ++
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETH 148
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASI 156
EAA+ ++++MNG++L GR + F VG+ + + ++ E+ AK + +Y+ +
Sbjct: 149 EAAERAIKKMNGMLLNGRKV---F----VGQFKSRKEREA---ELGARAKEFPNVYIKNF 198
Query: 157 HPDLTEEDIK 166
D+ +E +K
Sbjct: 199 GEDMDDERLK 208
Score = 104 (41.7 bits), Expect = 0.00030, P = 0.00030
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 32 VGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFV 91
+ P TP + S +YVG + ++ E + + F P GPI SI + D IT +A+V
Sbjct: 1 MNPSTPSYPTAS---LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYV 57
Query: 92 EYDIPEAAQLSLEQMNGVMLGGRNIKV 118
+ + A+ +L+ MN ++ G+ +++
Sbjct: 58 NFQHTKDAEHALDTMNFDVIKGKPVRI 84
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 127 (49.8 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 23/78 (29%), Positives = 48/78 (61%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S ++++G +++ + ED++R+AF +G + + D T + +GF FV + EAA +
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 103 LEQMNGVMLGGRNIKVHF 120
++ ++G L GR +KV++
Sbjct: 98 IQALDGRDLHGRVVKVNY 115
>UNIPROTKB|E2RFH9 [details] [associations]
symbol:LOC479820 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
OMA:KMIHPYV EMBL:AAEX03004472 Ensembl:ENSCAFT00000028467
Uniprot:E2RFH9
Length = 774
Score = 133 (51.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 36/151 (23%), Positives = 77/151 (50%)
Query: 19 YPFLSTPLYDLKQVGP-ITPDVNSNSPLR------VYVGSISFELKEDTIRQAFLPFGPI 71
+PF S + + P +T ++N ++ VY G S +++ F FGPI
Sbjct: 474 FPF-SIVQFSFEPFSPSLTEEMNKRMRIKWTEMSTVYAGPFSKNCNLRALKRLFKSFGPI 532
Query: 72 KSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
+S+ + + + H+ ++Y++ EAAQL++E ++GV++ G IKV P ++ N
Sbjct: 533 RSMTL----VLETHQPHLCIQYEVLEAAQLAIESLDGVLVEGACIKVQRPVTELTLDCN- 587
Query: 132 PQAQSVIDEITEEAKLYNRIYVASIHPDLTE 162
++++E+ ++++ IY++ + E
Sbjct: 588 ----TLVNELEQDSENRGTIYLSGVSETFKE 614
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 123 (48.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/92 (28%), Positives = 53/92 (57%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV+ + L+V ++++ +T+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVDGMTSLKV--DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGAILDGRELRVQM--ARYGRP 95
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 125 (49.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/122 (27%), Positives = 63/122 (51%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
VY+ + ++ ++ ++ F FGP S+ + D + K KGF FV ++ E AQ ++++M
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 107 NGVMLGGRNIKVHFPHVQVGRPSNMPQA--QSVIDEITEEAKLYNRIYVASIHPDLTEED 164
NG L G+ I V +V R + + + Q D IT + +YV ++ + +E
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV--NLYVKNLDDGIDDER 142
Query: 165 IK 166
++
Sbjct: 143 LR 144
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
++N+ ++VG I + E ++ F FG I++I + + T+K++GFAFVEY + A
Sbjct: 3 DNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDA 62
Query: 100 QLSLEQMNGVMLGGRNIKVHF 120
+ +L MN L G+ I V++
Sbjct: 63 KHALYNMNNFELNGKRIHVNY 83
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
++N+ ++VG I + E ++ F FG I++I + + T+K++GFAFVEY + A
Sbjct: 3 DNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDA 62
Query: 100 QLSLEQMNGVMLGGRNIKVHF 120
+ +L MN L G+ I V++
Sbjct: 63 KHALYNMNNFELNGKRIHVNY 83
>UNIPROTKB|G4NC92 [details] [associations]
symbol:MGG_01109 "Nuclear cap-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CM001235
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_003717825.1
ProteinModelPortal:G4NC92 EnsemblFungi:MGG_01109T0 GeneID:2674842
KEGG:mgr:MGG_01109 Uniprot:G4NC92
Length = 155
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINM--SWDPIT-QKHKGFAFVEYDIPEAAQLSL 103
+YVG + E ++ AF+PFG I + M + +P + + H+GFA+VEY+ + A+ ++
Sbjct: 11 LYVGGLPAAATEASLHDAFIPFGEIADVKMPKNDNPKSAETHRGFAYVEYEDADDAKEAM 70
Query: 104 EQMNGVMLGGRNIKVH 119
+ M+ GR IKVH
Sbjct: 71 DNMDQSEFFGRIIKVH 86
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 125 (49.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+S+ P + V ++ + +++ +R+ F FGP+K I + D T +GF F+++ P A
Sbjct: 32 DSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADA 91
Query: 100 QLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNM 131
+ QM+G +L GR + V F +P+ M
Sbjct: 92 AEAKHQMDGYLLLGRELTVVFAEENRKKPTEM 123
>UNIPROTKB|H3BV80 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1
ProteinModelPortal:H3BV80 SMR:H3BV80 Ensembl:ENST00000569598
Bgee:H3BV80 Uniprot:H3BV80
Length = 211
Score = 122 (48.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH----KGFAFVEYDIP 96
S P +V++G ++ + +D I + F +G IK I+M P+ + H KG+A+VE++ P
Sbjct: 63 SPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM---PVERMHPHLSKGYAYVEFENP 119
Query: 97 EAAQLSLEQMNGVMLGGRNI 116
+ A+ +L+ M+G + G+ I
Sbjct: 120 DEAEKALKHMDGGQIDGQEI 139
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 123 (48.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 26/92 (28%), Positives = 52/92 (56%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PDV + L+V ++++ +T+R+ F +G + + + D T++ +GFAFV +
Sbjct: 8 PDVEGMTSLKV--DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
A+ +++ M+G +L GR ++V + GRP
Sbjct: 66 RDAEDAMDAMDGALLDGRELRVQM--ARYGRP 95
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V ++ P ++++G ++ E E + F +G I + + D T K +GFAFV ++ P
Sbjct: 4 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 99 AQLSLEQMNGVMLGGRNIKVHF---PHVQVGRPSNMPQAQS 136
A+ + MNG L G+ IKV P + GR P +S
Sbjct: 64 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRS 104
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V ++ P ++++G ++ E E + F +G I + + D T K +GFAFV ++ P
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHF---PHVQVGRPSNMPQAQS 136
A+ + MNG L G+ IKV P + GR P +S
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRS 102
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 113 (44.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 20/66 (30%), Positives = 41/66 (62%)
Query: 28 DLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
D Q G +PD + + P ++++G +S++ ++ +R+ F FG +K + DP+T++ +G
Sbjct: 4 DAPQPGLASPD-SPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 62
Query: 88 FAFVEY 93
F FV +
Sbjct: 63 FGFVTF 68
Score = 34 (17.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 150 RIYVASIHPDLTEEDIK 166
+I+V + + T ED+K
Sbjct: 110 KIFVGGLSVNTTVEDVK 126
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 113 (44.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 20/66 (30%), Positives = 41/66 (62%)
Query: 28 DLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
D Q G +PD + + P ++++G +S++ ++ +R+ F FG +K + DP+T++ +G
Sbjct: 4 DAPQPGLASPD-SPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 62
Query: 88 FAFVEY 93
F FV +
Sbjct: 63 FGFVTF 68
Score = 34 (17.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 150 RIYVASIHPDLTEEDIK 166
+I+V + + T ED+K
Sbjct: 110 KIFVGGLSVNTTVEDVK 126
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 113 (44.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 20/66 (30%), Positives = 41/66 (62%)
Query: 28 DLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
D Q G +PD + + P ++++G +S++ ++ +R+ F FG +K + DP+T++ +G
Sbjct: 4 DAPQPGLASPD-SPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 62
Query: 88 FAFVEY 93
F FV +
Sbjct: 63 FGFVTF 68
Score = 34 (17.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 150 RIYVASIHPDLTEEDIK 166
+I+V + + T ED+K
Sbjct: 110 KIFVGGLSVNTTVEDVK 126
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 113 (44.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 20/66 (30%), Positives = 41/66 (62%)
Query: 28 DLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
D Q G +PD + + P ++++G +S++ ++ +R+ F FG +K + DP+T++ +G
Sbjct: 4 DAPQPGLASPD-SPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 62
Query: 88 FAFVEY 93
F FV +
Sbjct: 63 FGFVTF 68
Score = 34 (17.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 150 RIYVASIHPDLTEEDIK 166
+I+V + + T ED+K
Sbjct: 110 KIFVGGLSVNTTVEDVK 126
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 113 (44.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 20/66 (30%), Positives = 41/66 (62%)
Query: 28 DLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKG 87
D Q G +PD + + P ++++G +S++ ++ +R+ F FG +K + DP+T++ +G
Sbjct: 4 DAPQPGLASPD-SPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 62
Query: 88 FAFVEY 93
F FV +
Sbjct: 63 FGFVTF 68
Score = 34 (17.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 150 RIYVASIHPDLTEEDIK 166
+I+V + + T ED+K
Sbjct: 110 KIFVGGLSVNTTVEDVK 126
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 38/116 (32%), Positives = 58/116 (50%)
Query: 20 PFLSTPLYDLKQVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMS 77
P +STPL +G ++ V + P +++ +I E + + AF FG + S +
Sbjct: 327 PGMSTPL----GIG-LSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVF 381
Query: 78 WDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPH-VQVGRPSNMP 132
D T K F FV YD AAQ +++ MNG LGG+ +KV G+PS+ P
Sbjct: 382 VDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSNNGQPSSNP 437
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 130 (50.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 31/101 (30%), Positives = 49/101 (48%)
Query: 31 QVGPITPDVNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGF 88
Q PI P P +++ + E + + Q FLPFG + S + D T + K F
Sbjct: 419 QPPPIIPQQQREGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCF 478
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQ-VGRP 128
FV +D P +AQ +++ MNG +G + +KV + RP
Sbjct: 479 GFVSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKRPKDANRP 519
>WB|WBGene00016245 [details] [associations]
symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
Length = 302
Score = 126 (49.4 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 34/121 (28%), Positives = 58/121 (47%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+G +S+ L E + F +G + +IN+ D T K KGFAF+ Y + L+++
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 107 NGVMLGGRNIKVHFPHVQVGR-PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
NG+ L R I+V HV+ + P A + EE + + ++ E+ I
Sbjct: 100 NGISLHKRMIRVD--HVEEYKVPKYKEDADDETKRLWEEGCAPKPVMREAAPMEVQEQRI 157
Query: 166 K 166
K
Sbjct: 158 K 158
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 126 (49.4 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V ++ P ++++G ++ E E + F +G I + + D T K +GFAFV ++ P
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHF---PHVQVGRPSNMPQAQS 136
A+ + MNG L G+ IKV P + GR P +S
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRS 102
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/104 (29%), Positives = 57/104 (54%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
PD N+ L V+ +S E +R+ F +GP+ +N+ +D T + +GFAFV ++
Sbjct: 14 PD--PNTCLGVF--GLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERI 69
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF----------PHVQVGRPSN 130
+ ++ ++E NG+ L GR I+V + P + +GRP++
Sbjct: 70 DDSKEAMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTH 113
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 41 SNSPLR-VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
S+ P+ +YVG + ++ E + + F P GP+ SI + D IT++ G+A+V + P A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ +L+ MN ++ G+ I++
Sbjct: 66 ERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E + F +G I+ + + D T++ +GF FV ++ E A+ ++
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSN 130
MNG + GR I+V Q G+ SN
Sbjct: 67 MNGKTVDGRQIRVD----QAGKSSN 87
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 125 (49.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 24/79 (30%), Positives = 49/79 (62%)
Query: 35 ITPDVNSNSPLR-VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEY 93
+ P + P R +++G + ++L E +++ F+ FG I+ I + D ITQK KG+AF+ +
Sbjct: 96 VDPHIKDTDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVF 155
Query: 94 DIPEAAQLSLEQMNGVMLG 112
P +++++ +++ GV G
Sbjct: 156 KDPISSKMAFKEI-GVHRG 173
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 32/101 (31%), Positives = 51/101 (50%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
V ++ P ++++G ++ E E + F +G I I + D T K +GFAFV ++ P
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 99 AQLSLEQMNGVMLGGRNIKVHF---PHVQVGRPSNMPQAQS 136
A+ + MNG L G+ IKV P + GR P +S
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRS 102
>TAIR|locus:2033888 [details] [associations]
symbol:Y14 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016604
"nuclear body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0035145 "exon-exon junction complex"
evidence=IPI] [GO:0010628 "positive regulation of gene expression"
evidence=IEP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0010628 GO:GO:0016604 GO:GO:0035145 KO:K12876 IPI:IPI00540540
RefSeq:NP_564591.1 UniGene:At.18276 ProteinModelPortal:F4I9J7
SMR:F4I9J7 PRIDE:F4I9J7 EnsemblPlants:AT1G51510.1 GeneID:841576
KEGG:ath:AT1G51510 OMA:WIILVTG Uniprot:F4I9J7
Length = 202
Score = 120 (47.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+ V + E +E+ I AF FG IK++N++ D + KG+A +EY+ E AQ ++ M
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 107 NGVMLGGRNIKV 118
NG L +N+ V
Sbjct: 157 NGAELLTQNVSV 168
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 119 (46.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 39 VNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEA 98
+NSNS L +V +++F+ K+D + F GPIK + +P T +++G+ FV + + E
Sbjct: 1 MNSNSTL--FVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLED 58
Query: 99 AQLSLEQMNGVMLGGRNIKVHF 120
AQ + +++ L GR +++ F
Sbjct: 59 AQRAAKELKNKKLHGRILRLDF 80
Score = 34 (17.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 136 SVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
S+ EI + L + ++V ++ + TE+++
Sbjct: 264 SINHEIRDNEGLEDTVFVRNLLFECTEQEL 293
WARNING: HSPs involving 739 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.137 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 166 148 0.00068 104 3 11 22 0.49 31
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 989
No. of states in DFA: 563 (60 KB)
Total size of DFA: 132 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.85u 0.13s 16.98t Elapsed: 00:00:01
Total cpu time: 16.87u 0.13s 17.00t Elapsed: 00:00:01
Start: Thu Aug 15 11:32:41 2013 End: Thu Aug 15 11:32:42 2013
WARNINGS ISSUED: 2