RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2136
(166 letters)
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 77.3 bits (190), Expect = 6e-20
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+YVG++SF E+ I + F G IK I M D + + GF FVEY A+ ++
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 106 MNGVMLGGRNIKVHF 120
+NG L R I+ +
Sbjct: 69 INGTRLDDRIIRTDW 83
Score = 25.7 bits (56), Expect = 1.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+YV ++ TEE I
Sbjct: 8 CTLYVGNLSFYTTEEQIY 25
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 76.1 bits (187), Expect = 1e-19
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+YVG + ++ E + + F P GPI SI + D IT++ G+A+V + P A+ +L+ M
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 107 NGVMLGGRNIKVHF 120
N ++ G+ +++ +
Sbjct: 63 NFDVIKGKPVRIMW 76
Score = 24.5 bits (53), Expect = 3.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 151 IYVASIHPDLTEEDIK 166
+YV +HPD+TE +
Sbjct: 3 LYVGDLHPDVTEAMLY 18
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 75.4 bits (185), Expect = 3e-19
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G + L +D +++ FGP+K+ N+ D T KG+AF EY ++
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 106 MNGVMLGGRNIKVHF 120
+NG+ LG + + V
Sbjct: 63 LNGMQLGDKKLLVQR 77
Score = 26.9 bits (59), Expect = 0.46
Identities = 2/18 (11%), Positives = 11/18 (61%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+++++ + L ++ +K
Sbjct: 2 HKLFIGGLPNYLNDDQVK 19
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 74.7 bits (183), Expect = 1e-18
Identities = 15/74 (20%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+ ++ +++ + + F +GPI+ I + P +G A+V Y+ A+ + + +
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNACDHL 66
Query: 107 NGVMLGGRNIKVHF 120
+G + R + V +
Sbjct: 67 SGFNVCNRYLVVLY 80
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 73.0 bits (179), Expect = 3e-18
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDP-ITQKHKGFAFVEYDIPEAAQLSLE 104
++ V +I F+ + IR+ F FG +K++ + T H+GF FV++ + A+ +
Sbjct: 10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 69
Query: 105 QM-NGVMLGGRNIKVHF 120
+ + L GR + + +
Sbjct: 70 ALCHSTHLYGRRLVLEW 86
Score = 26.1 bits (57), Expect = 0.93
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 149 NRIYVASIHPDLTEEDIK 166
++I V +I + +I+
Sbjct: 9 SKILVRNIPFQANQREIR 26
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 71.9 bits (176), Expect = 5e-18
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +S++ ++ +R+ F FG +K + DP+T++ +GF FV + L
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA- 60
Query: 106 MNGVMLGGRNIKV 118
+ L + I
Sbjct: 61 QSRHELDSKTIDP 73
Score = 25.7 bits (56), Expect = 1.2
Identities = 2/17 (11%), Positives = 10/17 (58%)
Query: 150 RIYVASIHPDLTEEDIK 166
++++ + T+E ++
Sbjct: 2 KMFIGGLSWQTTQEGLR 18
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 71.9 bits (176), Expect = 5e-18
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+YV ++ + +D + F +G I N+ D +T + +G AFV Y+ E AQ ++
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 106 MNGVML--GGRNIKVHF 120
+N V+ G + + V
Sbjct: 68 LNNVIPEGGSQPLSVRL 84
Score = 24.9 bits (54), Expect = 2.6
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 150 RIYVASIHPDLTEEDIK 166
+YV ++ +T++ +
Sbjct: 8 NLYVTNLPRTITDDQLD 24
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 71.2 bits (174), Expect = 1e-17
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
GPI+ N VYVG + ++ E + + FL GP+ + +M D +T +H+G+ FVE
Sbjct: 1 GPIS---ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 57
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
+ E A +++ M+ + L G+ I+V+
Sbjct: 58 FLSEEDADYAIKIMDMIKLYGKPIRVNK 85
Score = 25.0 bits (54), Expect = 2.5
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+YV + ++E +
Sbjct: 10 ATVYVGGLDEKVSEPLLW 27
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 70.8 bits (173), Expect = 1e-17
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 48 YVGSISFELKEDTIRQAFLPFGPIKSINMSWDP---ITQKHKGFAFVEYDIPEAAQLSLE 104
++ +++F E+T++ F G IKS +S GF FVEY PE AQ +L+
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 105 QMNGVMLGGRNIKVHFPHVQVGRPS 129
Q+ G + G ++V + +P+
Sbjct: 62 QLQGHTVDGHKLEVRISE-RATKPA 85
Score = 25.0 bits (54), Expect = 2.6
Identities = 4/16 (25%), Positives = 11/16 (68%)
Query: 151 IYVASIHPDLTEEDIK 166
+++ +++ TEE +K
Sbjct: 1 LFIKNLNFSTTEETLK 16
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 70.3 bits (172), Expect = 2e-17
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++ V ++ F + + I++ F FG +K + +D + + G A V ++ A +++Q
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 60
Query: 106 MNGVMLGGRNIKVHF 120
NGV L GR + +
Sbjct: 61 YNGVPLDGRPMNIQL 75
Score = 26.0 bits (57), Expect = 0.72
Identities = 3/17 (17%), Positives = 12/17 (70%)
Query: 150 RIYVASIHPDLTEEDIK 166
++ V+++ +++ DI+
Sbjct: 2 KLLVSNLDFGVSDADIQ 18
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 69.2 bits (169), Expect = 5e-17
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +S++ + ++ F FG + + DPIT + +GF FV + E+ ++
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD- 59
Query: 106 MNGVMLGGRNIKV 118
L G+ I
Sbjct: 60 QKEHKLNGKVIDP 72
Score = 26.1 bits (57), Expect = 0.89
Identities = 4/17 (23%), Positives = 12/17 (70%)
Query: 150 RIYVASIHPDLTEEDIK 166
++++ + D T++D+K
Sbjct: 1 KMFIGGLSWDTTKKDLK 17
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 69.2 bits (169), Expect = 7e-17
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+ V + ++ E +++ F FG + + + D T KGF FV + E + Q
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 69
Query: 106 MNGVMLGGRNIKVHFP 121
+ M+ GR P
Sbjct: 70 RH--MIDGRWCDCKLP 83
Score = 24.2 bits (52), Expect = 5.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+ + V + TE+D+K
Sbjct: 9 SDLIVLGLPWKTTEQDLK 26
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 69.0 bits (168), Expect = 8e-17
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
N + + V +S E +R+ F +GPI +++ +D +++ +GFAFV ++ + A
Sbjct: 5 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 64
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+ + E+ NG+ L GR I+V
Sbjct: 65 KEAKERANGMELDGRRIRV 83
Score = 24.7 bits (53), Expect = 2.9
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+ V + TE D++
Sbjct: 10 CCLGVFGLSLYTTERDLR 27
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 68.5 bits (167), Expect = 1e-16
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+YVG ++ E+ + + AF+PFG I I + D T+KH+GFAFVE+++ E A +++
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 106 MNGVMLGGRNIKVHF 120
MN L GR I+V+
Sbjct: 67 MNESELFGRTIRVNL 81
Score = 23.5 bits (50), Expect = 9.5
Identities = 2/18 (11%), Positives = 9/18 (50%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+YV + ++ ++ +
Sbjct: 6 RVLYVGGLAEEVDDKVLH 23
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 67.7 bits (165), Expect = 2e-16
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +S + E+ IR+ F FG ++SI + D T K +GF F+ + E + +E+
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 106 MNGVMLGGRNIKV 118
+G ++
Sbjct: 61 -KYHNVGLSKCEI 72
Score = 26.1 bits (57), Expect = 0.85
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 150 RIYVASIHPDLTEEDIK 166
+I+V + PD EE I+
Sbjct: 1 KIFVGGLSPDTPEEKIR 17
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 68.2 bits (166), Expect = 2e-16
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+YV + + + + Q F +G I + + D +T +G F+ +D A+ +++
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
Query: 106 MNGVMLGGRN--IKVHF 120
+NG G I V F
Sbjct: 68 LNGQKPSGATEPITVKF 84
Score = 25.0 bits (54), Expect = 2.5
Identities = 3/17 (17%), Positives = 12/17 (70%)
Query: 150 RIYVASIHPDLTEEDIK 166
+YV+ + +T+++++
Sbjct: 8 NLYVSGLPKTMTQKELE 24
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 68.0 bits (166), Expect = 3e-16
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 46 RVYVGSISFEL-KEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
RV++G+++ + K+ + F +G I ++ HKGFAFV+Y A+ ++
Sbjct: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERNARAAVA 68
Query: 105 QMNGVMLGGRNIKVHF 120
+G M+ G+ + ++
Sbjct: 69 GEDGRMIAGQVLDINL 84
Score = 23.7 bits (51), Expect = 8.1
Identities = 2/23 (8%), Positives = 14/23 (60%)
Query: 142 TEEAKLYNRIYVASIHPDLTEED 164
T+ + +R+++ +++ + ++
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKKS 31
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 67.8 bits (165), Expect = 3e-16
Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SFE E+++R + +G + + DP +++ +GF FV + ++
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA- 80
Query: 106 MNGVMLGGRNIKVHF 120
+ GR ++
Sbjct: 81 ARPHSIDGRVVEPKR 95
Score = 26.2 bits (57), Expect = 1.1
Identities = 4/24 (16%), Positives = 14/24 (58%)
Query: 143 EEAKLYNRIYVASIHPDLTEEDIK 166
E + + ++++ + + TEE ++
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLR 38
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 67.4 bits (164), Expect = 4e-16
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
S + V + + ++ R F G I+S + D IT + G+ FV Y P+ A+ +
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 103 LEQMNGVMLGGRNIKVHFPHVQVGRPS 129
+ +NG+ L + IKV + RPS
Sbjct: 61 INTLNGLRLQTKTIKVSY-----ARPS 82
Score = 23.9 bits (51), Expect = 4.9
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 150 RIYVASIHPDLTEEDIK 166
+ V + ++T+E+ +
Sbjct: 4 NLIVNYLPQNMTQEEFR 20
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 67.3 bits (164), Expect = 4e-16
Identities = 16/75 (21%), Positives = 37/75 (49%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+ V + ++ + + F GPI + + D T G+AFV++ +Q +++
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 106 MNGVMLGGRNIKVHF 120
+NG+ + + +KV +
Sbjct: 64 LNGITVRNKRLKVSY 78
Score = 24.6 bits (53), Expect = 3.2
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 150 RIYVASIHPDLTEEDIK 166
+ V + D+T+ ++
Sbjct: 4 NLIVNYLPQDMTDRELY 20
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 67.4 bits (164), Expect = 5e-16
Identities = 25/94 (26%), Positives = 51/94 (54%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+ R++V ++S+ E+ + + F +GP+ ++ D +T+K KGFAFV + PE A
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAV 64
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMPQA 134
+ +++G + GR + V ++ + P +
Sbjct: 65 KAYAEVDGQVFQGRMLHVLPSTIKKEASQSGPSS 98
Score = 27.8 bits (61), Expect = 0.28
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 149 NRIYVASIHPDLTEEDIK 166
R++V ++ +EED++
Sbjct: 9 GRLFVRNLSYTSSEEDLE 26
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 67.0 bits (163), Expect = 7e-16
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
N+ R+YVG++ +++ I F +G I+ I++ + FAFVE++ P A+
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAED 68
Query: 102 SLEQMNGVMLGGRNIKVHFPHVQVGRPS 129
++ +G G ++V FP + GR +
Sbjct: 69 AVYGRDGYDYDGYRLRVEFP--RSGRGT 94
Score = 26.6 bits (58), Expect = 0.65
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 149 NRIYVASIHPDLTEEDIK 166
RIYV ++ PD+ +DI+
Sbjct: 15 CRIYVGNLPPDIRTKDIE 32
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 66.2 bits (161), Expect = 1e-15
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SFE ++++R F +G + + DP T++ +GF FV Y E ++
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN- 66
Query: 106 MNGVMLGGRNIKV 118
+ GR ++
Sbjct: 67 ARPHKVDGRVVEP 79
Score = 25.4 bits (55), Expect = 1.4
Identities = 3/24 (12%), Positives = 14/24 (58%)
Query: 143 EEAKLYNRIYVASIHPDLTEEDIK 166
+E + ++++ + + T+E ++
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLR 24
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 66.2 bits (161), Expect = 1e-15
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P+ ++ + V ++S + +E +++ F PFG I I ++ D T + KGFAF+ +
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
E A ++ ++G + V + +PS
Sbjct: 61 EDAARAIAGVSGFGYDHLILNVEW-----AKPST 89
Score = 26.2 bits (57), Expect = 1.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 149 NRIYVASIHPDLTEEDIK 166
I V ++ D E D++
Sbjct: 9 ATIRVTNLSEDTRETDLQ 26
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 66.2 bits (161), Expect = 1e-15
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
V+ ++ ++ + F G ++ + + D +++ KG A+VE+ ++ L++
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG- 78
Query: 106 MNGVMLGGRNIKVHF 120
+ G L G I V
Sbjct: 79 LTGQRLLGVPIIVQA 93
Score = 28.5 bits (63), Expect = 0.18
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 138 IDEITEEAKLYNRIYVASIHPDLTEEDIK 166
+D ++ E + ++ + + D++
Sbjct: 8 VDNLSPEERDARTVFCMQLAARIRPRDLE 36
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 65.9 bits (160), Expect = 2e-15
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKS--INMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
R+++G I K + I + I + K++GFAFVEY+ AA ++
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 104 EQMNG--VMLGGRNIKVHF 120
++ + L G I V +
Sbjct: 63 RKLMPGRIQLWGHQIAVDW 81
Score = 25.0 bits (54), Expect = 2.2
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 150 RIYVASIHPDLTEEDIK 166
R+++ I E+I
Sbjct: 3 RLFIGGIPKMKKREEIL 19
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 65.4 bits (159), Expect = 2e-15
Identities = 16/75 (21%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R++VG++ ++ E+ +R+ F +G + + KGF F+ + A+++ +
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVE 63
Query: 106 MNGVMLGGRNIKVHF 120
++ + L G+ ++V F
Sbjct: 64 LDNMPLRGKQLRVRF 78
Score = 26.9 bits (59), Expect = 0.43
Identities = 7/18 (38%), Positives = 16/18 (88%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+R++V ++ PD+TEE+++
Sbjct: 9 SRLFVGNLPPDITEEEMR 26
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 65.2 bits (158), Expect = 3e-15
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMS-----WDPITQKHKGFAFVEYDIPEAAQ 100
R+YVG+I F + E+ + F + + + + K FAF+E+ +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRP 128
++ +G++ G+++K+ PH P
Sbjct: 63 QAM-AFDGIIFQGQSLKIRRPHDYQPLP 89
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 65.1 bits (158), Expect = 3e-15
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ P +YVG++S ++ E I Q F GP KS M + + + FVE+ A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDA 61
Query: 100 QLSLEQMNGVMLGGRNIKVHF 120
+L MNG + G+ +KV++
Sbjct: 62 AAALAAMNGRKILGKEVKVNW 82
Score = 24.2 bits (52), Expect = 4.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+YV ++ D+TE I
Sbjct: 9 RTLYVGNLSRDVTEVLIL 26
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 65.1 bits (158), Expect = 3e-15
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+ ++SF + ED +++ F + + K KG A++E+ A+ +LE+
Sbjct: 18 TLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEE 72
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
G + GR++ +++ + G
Sbjct: 73 KQGAEIDGRSVSLYYTGEKGGTR 95
Score = 24.6 bits (53), Expect = 4.0
Identities = 3/25 (12%), Positives = 15/25 (60%)
Query: 142 TEEAKLYNRIYVASIHPDLTEEDIK 166
+++ + + ++ ++TE+++K
Sbjct: 10 SKKVRAARTLLAKNLSFNITEDELK 34
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 64.0 bits (155), Expect = 7e-15
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +SF+ E ++ Q F +G I + + D TQ+ +GF FV ++ + A+ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 106 MNGVMLGGRNIKVHF 120
MNG + GR I+V
Sbjct: 67 MNGKSVDGRQIRVDQ 81
Score = 25.9 bits (56), Expect = 1.0
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+++V + D E+ ++
Sbjct: 6 GKLFVGGLSFDTNEQSLE 23
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 64.4 bits (156), Expect = 9e-15
Identities = 17/98 (17%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 33 GPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVE 92
G + + P ++G++ +++ E++I++ F ++ KGF + E
Sbjct: 4 GSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAE 63
Query: 93 YDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSN 130
++ ++ +L +N LG + I+V + S
Sbjct: 64 FEDLDSLLSALS-LNEESLGNKRIRVDVADQAQDKDSG 100
Score = 25.5 bits (55), Expect = 2.0
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 149 NRIYVASIHPDLTEEDIK 166
++ ++ D+TEE IK
Sbjct: 16 YTAFLGNLPYDVTEESIK 33
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 63.6 bits (154), Expect = 9e-15
Identities = 14/73 (19%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG +S + ++ F FG + + +D T +H+GF FV ++ + + E
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE- 59
Query: 106 MNGVMLGGRNIKV 118
++ + + ++
Sbjct: 60 IHFHEINNKMVEC 72
Score = 25.8 bits (56), Expect = 0.91
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 150 RIYVASIHPDLTEEDIK 166
+I+V + + T ED+K
Sbjct: 1 KIFVGGLSVNTTVEDVK 17
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 63.9 bits (155), Expect = 9e-15
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 40 NSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAA 99
+ ++P R++V +I F ++ +RQ F FG I + + ++ K F FV ++ A
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG--FGFVTFENSADA 64
Query: 100 QLSLEQMNGVMLGGRNIKVHF 120
+ E+++G ++ GR I+V+
Sbjct: 65 DRAREKLHGTVVEGRKIEVNN 85
Score = 26.6 bits (58), Expect = 0.73
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 149 NRIYVASIHPDLTEEDIK 166
R++V++I + D++
Sbjct: 12 KRLHVSNIPFRFRDPDLR 29
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 63.6 bits (154), Expect = 1e-14
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++V SI E +ED I++ F +G IK+I+++ D T KG+A VEY+ + A + E
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 68
Query: 106 MNGVMLGGRNIKVHF 120
+NG + G+ I+V +
Sbjct: 69 LNGAEIMGQTIQVDW 83
Score = 24.7 bits (53), Expect = 3.1
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 149 NRIYVASIHPDLTEEDIK 166
++V SIH + E++I+
Sbjct: 8 WILFVTSIHEEAQEDEIQ 25
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 63.8 bits (155), Expect = 1e-14
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 39 VNSNSP--LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
VN +SP VY G I+ L + +RQ F PFG I I + KG++FV +
Sbjct: 11 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV------FPEKGYSFVRFSTH 64
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E+A ++ +NG + G +K ++
Sbjct: 65 ESAAHAIVSVNGTTIEGHVVKCYW 88
Score = 26.5 bits (58), Expect = 0.86
Identities = 5/30 (16%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 138 IDEITEEAKLYN-RIYVASIHPDLTEEDIK 166
+++ ++ N +Y I LT++ ++
Sbjct: 7 FEDVVNQSSPKNCTVYCGGIASGLTDQLMR 36
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 63.6 bits (154), Expect = 1e-14
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++ + E + + Q F+PFG + S + D T K F FV YD P +AQ +++
Sbjct: 20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 79
Query: 106 MNGVMLGGRNIKVHF 120
MNG +G + +KV
Sbjct: 80 MNGFQIGMKRLKVQL 94
Score = 25.0 bits (54), Expect = 2.4
Identities = 1/18 (5%), Positives = 9/18 (50%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+++ + + ++D+
Sbjct: 19 ANLFIYHLPQEFGDQDLL 36
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 62.8 bits (152), Expect = 2e-14
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSIN-MSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++G++ E+ E + F FG I + DP T KG+AF+ + +A+ ++E
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 106 MNGVMLGGRNIKVHF 120
MNG L R I V +
Sbjct: 61 MNGQYLCNRPITVSY 75
Score = 24.3 bits (52), Expect = 4.0
Identities = 3/16 (18%), Positives = 11/16 (68%)
Query: 151 IYVASIHPDLTEEDIK 166
I++ ++ P++ E+ +
Sbjct: 1 IFIGNLDPEIDEKLLY 16
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 63.2 bits (153), Expect = 2e-14
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG + + + ++R+ F FG I+ + D T K +G+ FV AA+ + +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNM 131
N ++ GR V+ ++ +P ++
Sbjct: 72 PNP-IIDGRKANVNLAYLG-AKPRSL 95
Score = 26.2 bits (57), Expect = 1.0
Identities = 3/19 (15%), Positives = 10/19 (52%)
Query: 148 YNRIYVASIHPDLTEEDIK 166
+ +I+V + T+ ++
Sbjct: 10 FTKIFVGGLPYHTTDASLR 28
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 63.1 bits (153), Expect = 2e-14
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 42 NSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQL 101
+ LR+ V ++ + + D + Q F FG + I + ++ A ++Y P +AQ
Sbjct: 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT----KNNQFQALLQYADPVSAQH 60
Query: 102 SLEQMNGVML--GGRNIKVHF 120
+ ++G + +++ F
Sbjct: 61 AKLSLDGQNIYNACCTLRIDF 81
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 62.1 bits (150), Expect = 3e-14
Identities = 10/75 (13%), Positives = 27/75 (36%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++ + + IR + + FA+++ E A+ +E+
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 106 MNGVMLGGRNIKVHF 120
+NG+ + G +
Sbjct: 63 LNGLKIEGYTLVTKV 77
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 62.0 bits (150), Expect = 4e-14
Identities = 14/76 (18%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLP-FGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+Y+ +++ ++K+D ++++ F I + K +G AFV + +A +L
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 105 QMNGVMLGGRNIKVHF 120
M G + +++ +
Sbjct: 65 SMQGFPFYDKPMRIQY 80
Score = 24.2 bits (52), Expect = 5.0
Identities = 3/18 (16%), Positives = 13/18 (72%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+ IY+ +++ + ++++K
Sbjct: 4 HTIYINNLNEKIKKDELK 21
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 62.5 bits (151), Expect = 5e-14
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKS--------INMSWDPITQKHKGF 88
PD +S++ +YV ++ + D + F G +K I++ D T K KG
Sbjct: 2 PDEDSDN-SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 60
Query: 89 AFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
A V Y+ P A+ ++E +G G +KV
Sbjct: 61 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSL 92
Score = 25.1 bits (54), Expect = 2.2
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+ IYV ++ +T +D+
Sbjct: 9 SAIYVQGLNDSVTLDDLA 26
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 61.2 bits (148), Expect = 8e-14
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 43 SPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLS 102
P + V ++ F + D I F + I G A V ++ + A +
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
Query: 103 LEQMNGVMLGGRNIKV 118
+ +N +G R +K+
Sbjct: 68 VIDLNDRPIGSRKVKL 83
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 60.8 bits (147), Expect = 1e-13
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
P + + +++ ++ + + F FG I S + D K + FV ++
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQ 58
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
EAA+ ++E+MNG++L R + V
Sbjct: 59 EAAERAIEKMNGMLLNDRKVFVGR 82
Score = 25.0 bits (54), Expect = 2.3
Identities = 1/18 (5%), Positives = 8/18 (44%)
Query: 149 NRIYVASIHPDLTEEDIK 166
I++ ++ + + +
Sbjct: 9 GNIFIKNLDKSIDNKALY 26
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 60.0 bits (145), Expect = 3e-13
Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 26 LYDLKQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKH 85
+Y Q + D ++ V + E E+ + +G ++ +N+ D +
Sbjct: 9 IYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-CDNLGDHL 67
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLGGRNIKVHF 120
G +V++ E A+ ++ +N G+ I
Sbjct: 68 VGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 58.6 bits (141), Expect = 6e-13
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG I + +E +R F +G I+ I + D + K +GFAFV +D ++ +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI- 62
Query: 106 MNGVMLGGRNIKV 118
+ G N +V
Sbjct: 63 QKYHTVNGHNCEV 75
Score = 24.7 bits (53), Expect = 3.0
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 150 RIYVASIHPDLTEEDIK 166
+I+V I D E ++
Sbjct: 4 KIFVGGIKEDTEEHHLR 20
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 58.2 bits (140), Expect = 2e-12
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
V+VG+I +E E+ ++ F GP+ S + +D T K KG+ F EY E A ++
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 106 MNGVMLGGRNIKVHF 120
+NG GR ++V
Sbjct: 70 LNGREFSGRALRVDN 84
Score = 23.9 bits (51), Expect = 5.9
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 150 RIYVASIHPDLTEEDIK 166
++V +I + TEE +K
Sbjct: 10 SVFVGNIPYEATEEQLK 26
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 60.0 bits (144), Expect = 2e-12
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+++VG I + +E +R F +G I+ I + D + K +GFAFV +D ++ +
Sbjct: 99 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI- 157
Query: 106 MNGVMLGGRNIKVHF 120
+ G N +V
Sbjct: 158 QKYHTVNGHNCEVRK 172
Score = 59.2 bits (142), Expect = 4e-12
Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++++G +SFE ++++R F +G + + DP T++ +GF FV Y E ++
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 106 MNGVMLGGRNIKVHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDI 165
+ G + + +I+V I D E +
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLT-------------VKKIFVGGIKEDTEEHHL 114
Query: 166 K 166
+
Sbjct: 115 R 115
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 57.6 bits (139), Expect = 2e-12
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 55 ELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVMLGGR 114
E++ED +R FG I+ + + G A V + PE A ++ ++G GGR
Sbjct: 31 EIRED-LRVECSKFGQIRKL----LLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 85
Query: 115 NIKVHF 120
I
Sbjct: 86 QITAQA 91
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 57.9 bits (139), Expect = 2e-12
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+Y+ ++S + E + F F K + + +T + +G AF+ + E A +L
Sbjct: 20 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 79
Query: 106 MNGVMLGGRNIKVHF 120
+NG L G+ + + F
Sbjct: 80 VNGYKLYGKILVIEF 94
Score = 25.1 bits (54), Expect = 2.7
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+Y+ ++ P +TE D+
Sbjct: 19 KVLYLKNLSPRVTERDLV 36
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 57.2 bits (137), Expect = 4e-12
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 38 DVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPE 97
DVNS + + ++ +I F + + + Q ++ + G A V++ +
Sbjct: 3 DVNS-AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNED 61
Query: 98 AAQLSLEQMNGVMLGGRNIKVHF 120
A+ S ++ L GR VH
Sbjct: 62 DARKSER-LHRKKLNGREAFVHV 83
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 56.2 bits (135), Expect = 5e-12
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
++Y+G++S + D +RQ F G+AFV+Y A ++E
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPL------AGQVLLKSGYAFVDYPDQNWAIRAIET 56
Query: 106 MNG-VMLGGRNIKVHF 120
++G V L G+ ++V +
Sbjct: 57 LSGKVELHGKIMEVDY 72
Score = 27.3 bits (60), Expect = 0.27
Identities = 5/18 (27%), Positives = 14/18 (77%)
Query: 149 NRIYVASIHPDLTEEDIK 166
N++Y+ ++ P +T +D++
Sbjct: 2 NKLYIGNLSPAVTADDLR 19
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 56.2 bits (135), Expect = 7e-12
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+ V+VG + ++ ED +R+ F +G + + + + FAFV + + AQ
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQ 56
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMP 132
+++ G ++ + + S
Sbjct: 57 SLC--GEDLIIKGISVHISNAEPKHNSNSGPS 86
Score = 24.6 bits (53), Expect = 3.1
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+ ++V D+TE++++
Sbjct: 6 SGVFVGRCTGDMTEDELR 23
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 56.8 bits (136), Expect = 1e-11
Identities = 24/103 (23%), Positives = 48/103 (46%)
Query: 30 KQVGPITPDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFA 89
+ + P + + + V I + E +RQ F +GPI+S+ + D T++ +G+
Sbjct: 28 QHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYG 87
Query: 90 FVEYDIPEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMP 132
FV++ +AQ ++ +NG + + +KV RP
Sbjct: 88 FVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAG 130
Score = 25.6 bits (55), Expect = 2.6
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 124 QVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
Q+ + Q ++ E + + V I + E ++
Sbjct: 18 QLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLR 60
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 54.8 bits (131), Expect = 2e-11
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+Y+ + + + + P+G I S D T K KG+ FV++D P AAQ ++ +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 107 NGVMLGGRNIK 117
+ + K
Sbjct: 61 KASGVQAQMAK 71
Score = 24.0 bits (51), Expect = 4.2
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 151 IYVASIHPDLTEEDIK 166
+Y+ + P T++D+
Sbjct: 1 LYIRGLQPGTTDQDLV 16
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 54.8 bits (131), Expect = 3e-11
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
V++ ++SF+ +E+ + + FG +K + + P T+ KG AF ++ EAAQ L
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 106 MN------GVMLGGRNIKVHF 120
+ G+ L GR +KV
Sbjct: 70 ASLEAEGGGLKLDGRQLKVDL 90
Score = 24.0 bits (51), Expect = 6.1
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+++ ++ D EE +
Sbjct: 9 KTVFIRNLSFDSEEEALG 26
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 53.9 bits (129), Expect = 6e-11
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+YV ++ E+ I + F P +K + +AFV + E A +++
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVER------VKKIRDYAFVHFSNREDAVEAMKA 63
Query: 106 MNGVMLGGRNIKVHF 120
+NG +L G I+V
Sbjct: 64 LNGKVLDGSPIEVTL 78
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 53.7 bits (128), Expect = 7e-11
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 46 RVYVGSISFELKEDTIRQAFL---PFGPIKSINMSWDPITQKH---KGFAFVEYDIPEAA 99
V+V +S L + + + FG I + ++ A+V Y E A
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 100 QLSLEQMNGVMLGGRNIKV 118
+++ +N V++ GR +K
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
Score = 24.8 bits (53), Expect = 3.1
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 149 NRIYVASIHPDLTEEDIK 166
N ++V + L + ++
Sbjct: 9 NLVFVVGLSQRLADPEVL 26
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 51.6 bits (123), Expect = 4e-10
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
R++VG + + + F FG I++I+ FA+++Y+ +AAQ + +
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK------GDSFAYIQYESLDAAQAACAK 72
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
M G LGG + ++ V +
Sbjct: 73 MRGFPLGGPDRRL---RVDFAKS 92
Score = 26.2 bits (57), Expect = 0.90
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 149 NRIYVASIHPDLTEEDIK 166
R++V + P+ + +
Sbjct: 18 TRLWVGGLGPNTSLAALA 35
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 51.3 bits (122), Expect = 5e-10
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 46 RVYVGSISFEL-KEDTIRQAFLPFG-PIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
+ + ++S EL E+ +R++F FG K + + AF+ ++ ++A+ +L
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 65
Query: 104 EQMNGVMLGGRNIKVHF 120
+ MN +LG R I V
Sbjct: 66 Q-MNRSLLGNREISVSL 81
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 51.7 bits (123), Expect = 6e-10
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S RV V + ++ G + ++ D VEY E +
Sbjct: 12 RRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-------MGMVEYLRKEDME 64
Query: 101 LSLEQMNGVMLGGRNIKVHFPHVQVGRPS 129
+L +++ + + V R S
Sbjct: 65 YALRKLDDTKFRSHEGETSYIRVYPERSS 93
Score = 25.1 bits (54), Expect = 2.1
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 149 NRIYVASIHPDLTEEDIK 166
R+ V+ + P + +D+K
Sbjct: 16 FRVLVSGLPPSGSWQDLK 33
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 51.2 bits (122), Expect = 6e-10
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
+YV + +R AF PFG I ++M AFV Y+ E+A ++ +
Sbjct: 7 TLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQAVAE 58
Query: 106 MNGVMLGGRNIKVHF 120
+NG + +KV+
Sbjct: 59 LNGTQVESVQLKVNI 73
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 49.6 bits (118), Expect = 4e-09
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 53 SFELKEDTIRQAFLPFGPIKS--INMSWDPITQKHKGFAFVEYDIPEAAQLSLEQMNGVM 110
+E + +R +G +KS I D + G FVE+ Q +++ + G
Sbjct: 23 EYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 82
Query: 111 LGGRNIKVHF 120
R + +
Sbjct: 83 FANRVVVTKY 92
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 49.4 bits (117), Expect = 4e-09
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 44 PLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
P +Y+ ++ + E + PFG + S + + +G F + E + +
Sbjct: 18 PTNLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDSSGTSRGVGFARMESTEKCEAVI 76
Query: 104 EQMNGVMLGGRNIKVH 119
NG +
Sbjct: 77 GHFNGKFIKTPPGVSA 92
Score = 24.4 bits (52), Expect = 4.1
Identities = 2/18 (11%), Positives = 12/18 (66%)
Query: 149 NRIYVASIHPDLTEEDIK 166
+Y++++ + E++++
Sbjct: 19 TNLYISNLPLSMDEQELE 36
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 48.6 bits (115), Expect = 6e-09
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S+ + V ++ + + + ++K AFV E AQ
Sbjct: 2 SSGSSGILVKNLPQDSNCQEVHDLLKDYDL-------KYCYVDRNKRTAFVTLLNGEQAQ 54
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+++ + G+++ V
Sbjct: 55 NAIQMFHQYSFRGKDLIVQL 74
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 48.4 bits (114), Expect = 6e-09
Identities = 13/80 (16%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S +P +++G+++ ++ A + + T ++ F +V+++ E +
Sbjct: 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAEDLE 68
Query: 101 LSLEQMNGVMLGGRNIKVHF 120
+L ++ G+ + G IK+
Sbjct: 69 KAL-ELTGLKVFGNEIKLEK 87
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 48.9 bits (116), Expect = 7e-09
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 45 LRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
L V G + + + + G + ++ M +K ++F Y E ++ +
Sbjct: 21 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYV 74
Query: 105 QMNGVMLG---GRNIKVHFPHVQ 124
+NG + G+ I ++ V+
Sbjct: 75 TLNGKEVVDDLGQKITLYLNFVE 97
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 49.0 bits (116), Expect = 7e-09
Identities = 8/97 (8%), Positives = 30/97 (30%), Gaps = 11/97 (11%)
Query: 41 SNSPLRVYVGSISFELKEDT-----IRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDI 95
S+ + + ++ ++ F + + + +
Sbjct: 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK------SFKRVRINFSN 55
Query: 96 PEAAQLSLEQMNGVMLGGRNIKVHFPHVQVGRPSNMP 132
P +A + +++ G+ +K++F S++
Sbjct: 56 PLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSSHLA 92
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 47.8 bits (113), Expect = 1e-08
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
VY+ + D I++ G + +I M + + KG FV +D E+A+ +E
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTLHKAFKGSIFVVFDSIESAKKFVE- 65
Query: 106 MNGVMLGGRNIKVHF 120
G ++ + F
Sbjct: 66 TPGQKYKETDLLILF 80
Score = 23.5 bits (50), Expect = 6.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 150 RIYVASIHPDLTEEDIK 166
+Y+ D T +DIK
Sbjct: 8 SVYIKGFPTDATLDDIK 24
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 48.2 bits (114), Expect = 1e-08
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 37 PDVNSNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
S + V++ + + E+ I F P P++ + G A VE+
Sbjct: 8 SSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE--IGPDGRVTGEADVEFATH 65
Query: 97 EAAQLSLEQMNGVMLGGRNIKVHF 120
E A ++ + + R +++
Sbjct: 66 EDAVAAMA-KDKANMQHRYVELFL 88
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 47.5 bits (112), Expect = 2e-08
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V+V + + E + +A FG I + M K A VE++ ++A+ +
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMMMP------FKRQALVEFENIDSAKECVTFA 71
Query: 107 --NGVMLGGRNIKVHF-PHVQVGRPSN 130
V + G+ ++ ++ RP N
Sbjct: 72 ADVPVYIAGQQAFFNYSTSKRITRPGN 98
Score = 24.4 bits (52), Expect = 4.3
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 149 NRIYVASIHPDLTEEDIK 166
++V + + E D+
Sbjct: 16 PVVHVRGLCESVVEADLV 33
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 47.4 bits (112), Expect = 3e-08
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 46 RVYVGSISFE-LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE 104
+ V +++ E + ++ F ++ I K A V+ AQL++
Sbjct: 4 VLLVSNLNPERVTPQSLFILF-----GVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 58
Query: 105 QMNGVMLGGRNIKVHFPHVQ-VGRPSNMPQAQS 136
+NG L G+ I++ Q V P + Q
Sbjct: 59 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQG 91
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 45.6 bits (107), Expect = 1e-07
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
+ VY+ + FE + + F ++ K G FVE+ +
Sbjct: 15 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYK 74
Query: 101 LSLEQMNGVMLGGRNIKVH 119
+L + +G R I+VH
Sbjct: 75 AALC-RHKQYMGNRFIQVH 92
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 44.2 bits (104), Expect = 2e-07
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
V V I F +G I MS + + Y A+ +L
Sbjct: 7 VTVFGFPQASASY-ILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKAL-SK 58
Query: 107 NGVMLGGRNI 116
+G + G +
Sbjct: 59 DGRIFGESIM 68
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 44.1 bits (103), Expect = 2e-07
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 46 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
RV V + ++ G + ++ D VE+ E ++ +
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG-------TGVVEFVRKEDMTYAVRK 54
Query: 106 MNGVMLGGRNIKVHFPHVQVGRP 128
++ + + V+V P
Sbjct: 55 LDNTKFRSHEGETAYIRVKVDGP 77
Score = 27.5 bits (60), Expect = 0.31
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 149 NRIYVASIHPDLTEEDI 165
NR+ V+ + P + +D+
Sbjct: 1 NRVVVSGLPPSGSWQDL 17
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 43.8 bits (102), Expect = 7e-07
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 7/107 (6%)
Query: 41 SNSPLRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQ 100
S + ++ I++ F FG + + + A VE+ P A+
Sbjct: 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEAR 60
Query: 101 LSLEQMNGVMLGGRNIKVHF-PHVQVGRPSNMPQAQSVIDEITEEAK 146
+ + + + + P G +Q E+
Sbjct: 61 KAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAESG 107
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 41.6 bits (97), Expect = 2e-06
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 47 VYVGSI-SFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQ 105
V++ + + Q PFG I + + + ++ F + A +
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYT 66
Query: 106 MNGVMLGGRNIKVHF 120
++ G+ ++VH
Sbjct: 67 TTPALVFGKPVRVHL 81
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 41.0 bits (95), Expect = 4e-06
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 38 DVNSNSPLR-VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIP 96
D +P R +++ + E+ E + LPF + + K K AF+E
Sbjct: 1 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPF------GKVTNILMLKGKNQAFLELATE 54
Query: 97 EAAQLSLE--QMNGVMLGGRNIKVHF 120
EAA + L + I + +
Sbjct: 55 EAAITMVNYYSAVTPHLRNQPIYIQY 80
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 36.1 bits (82), Expect = 2e-04
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 47 VYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLEQM 106
+ + + ++ + + K+KG AFV E A+ ++
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYEL-------KYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 107 NGVMLGGRNIKVHF 120
+ L R + V
Sbjct: 54 HQSRLRERELSVQL 67
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 29.2 bits (64), Expect = 0.099
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 47 VYVGSISFE-LKEDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSLE- 104
+++ ++ + + + P+G IK+ + K AF+E + E A ++
Sbjct: 21 IHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDH 74
Query: 105 -QMNGVMLGGRNIKVHF 120
+ GR +KV
Sbjct: 75 CLKKALWFQGRCVKVDL 91
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 25.4 bits (56), Expect = 1.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 86 KGFAFVEYDIPEAAQLSLEQMNGVMLG 112
KGF F+E D ++ + QM VM G
Sbjct: 28 KGFGFLEVDAQKSYFIPPPQMKKVMHG 54
>d1m1ha2 d.58.42.1 (A:5-50,A:132-186) N-utilization substance G
protein NusG, N-terminal domain {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 24.8 bits (54), Expect = 2.9
Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 45 LRVYVGSISFELK-EDTIRQAFLPFGPIKSINMSWDPITQKHKGFAFVEYDIPEAAQLSL 103
L+V G E + ++ + + G ++ P + G+ ++ + + +++
Sbjct: 12 LQVEPG---KENEAKENLLKVLELEGLKDLVDEVIVPANKIFPGYILIKAHMNDKLLMAI 68
Query: 104 EQMNGVM 110
E+ V
Sbjct: 69 EKTPHVF 75
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 25.4 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 128 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 166
PS Q +D + L +RI + P TEED++
Sbjct: 1 PSARDILQQGLDRLGSPEDLASRIDSTLLSPRATEEDVR 39
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 24.9 bits (53), Expect = 6.4
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 146 KLYNRIYVASIHPDLTEEDIK 166
RI + PD+TE D
Sbjct: 345 WNSERICSLPLFPDMTESDFD 365
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
{Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 24.6 bits (52), Expect = 7.3
Identities = 1/21 (4%), Positives = 8/21 (38%)
Query: 146 KLYNRIYVASIHPDLTEEDIK 166
+ + ++++D+
Sbjct: 343 LFFQKGICLPSGTAMSKDDVY 363
>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis
protein C {Helicobacter pylori [TaxId: 210]}
Length = 371
Score = 24.7 bits (52), Expect = 7.4
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 146 KLYNRIYVASIHPDLTEEDIK 166
Y+ H +L E ++
Sbjct: 338 DFYHAEISLPCHANLNLESVQ 358
>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of
formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 179
Score = 24.0 bits (52), Expect = 7.8
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 135 QSVIDEITEEAKLYNRIYVASIHPD 159
Q VID I+ + +
Sbjct: 16 QEVIDAISRAVAQTPGCVLLDVDSG 40
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta
{Acidaminococcus fermentans [TaxId: 905]}
Length = 260
Score = 24.2 bits (52), Expect = 8.4
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 149 NRIYVASIHPDLTEEDIK 166
R+Y+A+ +P + ED+
Sbjct: 203 KRMYLAAYYPTSSPEDVL 220
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 23.2 bits (50), Expect = 10.0
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 126 GRPSNMPQAQSVIDEITEEAK---LYNRI 151
G + A+ I I +EA L +R+
Sbjct: 46 GDRRKVSIAEEAIYLIEQEAHTEGLTDRV 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.415
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 641,998
Number of extensions: 28446
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 148
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.3 bits)