Query psy2137
Match_columns 382
No_of_seqs 301 out of 456
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 16:58:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xag_B REST corepressor 1; ami 99.9 2.3E-23 7.9E-28 213.4 0.0 116 80-211 124-241 (482)
2 2crg_A Metastasis associated p 99.8 2E-22 6.7E-27 157.7 -0.7 65 154-218 4-68 (70)
3 2yqk_A Arginine-glutamic acid 99.8 3E-19 1E-23 136.8 4.0 57 150-209 4-60 (63)
4 4a69_C Nuclear receptor corepr 99.7 3E-17 1E-21 135.2 3.5 54 156-210 41-94 (94)
5 2eqr_A N-COR1, N-COR, nuclear 99.6 1.3E-15 4.4E-20 115.7 3.8 53 154-207 8-60 (61)
6 2xag_B REST corepressor 1; ami 99.2 8.6E-13 2.9E-17 135.5 0.0 66 300-367 94-160 (482)
7 2iw5_B Protein corest, REST co 98.8 2.3E-09 7.8E-14 100.5 4.5 56 156-212 131-186 (235)
8 1wgx_A KIAA1903 protein; MYB D 97.5 5.7E-05 1.9E-09 59.3 3.7 44 159-203 9-56 (73)
9 4eef_G F-HB80.4, designed hema 97.5 2.8E-05 9.7E-10 61.0 1.8 44 158-202 20-67 (74)
10 2yus_A SWI/SNF-related matrix- 97.4 8.3E-05 2.8E-09 59.0 3.2 43 158-201 18-60 (79)
11 2cu7_A KIAA1915 protein; nucle 97.2 0.00021 7E-09 55.2 3.8 42 159-201 10-51 (72)
12 2ltp_A Nuclear receptor corepr 96.3 4.5E-05 1.5E-09 61.6 0.0 50 159-209 17-66 (89)
13 2cqr_A RSGI RUH-043, DNAJ homo 97.1 0.0003 1E-08 55.0 3.1 44 158-202 18-65 (73)
14 2yum_A ZZZ3 protein, zinc fing 96.9 0.00043 1.5E-08 53.6 2.5 41 159-200 9-55 (75)
15 1x41_A Transcriptional adaptor 96.8 0.0011 3.6E-08 49.4 3.7 42 159-201 9-51 (60)
16 2elk_A SPCC24B10.08C protein; 96.7 0.0011 3.7E-08 49.2 3.3 41 159-200 10-52 (58)
17 2cjj_A Radialis; plant develop 96.7 0.0012 4.2E-08 53.9 3.7 42 159-201 9-54 (93)
18 1w4s_A Polybromo, polybromo 1 96.6 0.00037 1.3E-08 62.3 0.1 54 44-97 82-140 (174)
19 2cqq_A RSGI RUH-037, DNAJ homo 96.5 0.0015 5E-08 51.0 3.1 40 159-200 9-52 (72)
20 1guu_A C-MYB, MYB proto-oncoge 96.5 0.0025 8.5E-08 45.8 3.9 42 159-201 4-46 (52)
21 2d9a_A B-MYB, MYB-related prot 96.4 0.0031 1.1E-07 46.6 4.5 43 159-202 9-52 (60)
22 3swr_A DNA (cytosine-5)-methyl 96.4 0.0011 3.7E-08 73.9 2.7 53 41-93 437-493 (1002)
23 1gvd_A MYB proto-oncogene prot 96.3 0.0045 1.5E-07 44.4 4.4 42 159-201 4-46 (52)
24 2dim_A Cell division cycle 5-l 96.0 0.0071 2.4E-07 46.1 4.6 43 159-202 10-53 (70)
25 1gv2_A C-MYB, MYB proto-oncoge 95.5 0.012 4.2E-07 47.8 4.5 44 159-203 57-100 (105)
26 2llk_A Cyclin-D-binding MYB-li 95.3 0.013 4.6E-07 45.6 3.6 46 159-206 24-69 (73)
27 1h8a_C AMV V-MYB, MYB transfor 95.1 0.024 8.1E-07 47.8 5.1 45 159-204 80-124 (128)
28 2k9n_A MYB24; R2R3 domain, DNA 94.8 0.02 6.7E-07 47.0 3.7 43 159-202 54-96 (107)
29 3osg_A MYB21; transcription-DN 94.8 0.027 9.2E-07 47.6 4.6 43 159-202 63-105 (126)
30 1w0t_A Telomeric repeat bindin 94.8 0.02 6.9E-07 41.2 3.2 43 159-202 3-48 (53)
31 3osg_A MYB21; transcription-DN 94.0 0.059 2E-06 45.4 4.8 43 159-202 12-54 (126)
32 1gv2_A C-MYB, MYB proto-oncoge 93.9 0.051 1.7E-06 44.1 4.2 43 159-202 5-48 (105)
33 1ity_A TRF1; helix-turn-helix, 93.7 0.084 2.9E-06 39.9 4.8 42 159-201 11-55 (69)
34 3zqc_A MYB3; transcription-DNA 93.6 0.065 2.2E-06 45.4 4.5 43 159-202 55-97 (131)
35 1h89_C C-MYB, MYB proto-oncoge 93.6 0.072 2.5E-06 46.4 4.9 45 159-204 111-155 (159)
36 2din_A Cell division cycle 5-l 93.6 0.046 1.6E-06 41.0 3.2 41 159-201 10-50 (66)
37 3sjm_A Telomeric repeat-bindin 93.6 0.042 1.4E-06 41.5 2.9 42 159-201 12-56 (64)
38 2k9n_A MYB24; R2R3 domain, DNA 93.1 0.066 2.3E-06 43.8 3.6 42 159-201 2-44 (107)
39 1h8a_C AMV V-MYB, MYB transfor 93.0 0.096 3.3E-06 44.0 4.5 43 159-202 28-71 (128)
40 3av4_A DNA (cytosine-5)-methyl 92.6 0.036 1.2E-06 63.5 1.7 52 42-93 749-804 (1330)
41 3zqc_A MYB3; transcription-DNA 92.6 0.11 3.8E-06 43.9 4.4 42 159-201 3-45 (131)
42 1x58_A Hypothetical protein 49 92.3 0.12 4.1E-06 39.2 3.7 42 159-200 9-52 (62)
43 3swr_A DNA (cytosine-5)-methyl 92.2 0.045 1.6E-06 61.0 1.8 52 43-94 211-274 (1002)
44 4dov_A ORC1, origin recognitio 91.7 0.087 3E-06 47.1 2.8 51 46-96 102-157 (163)
45 2ckx_A NGTRF1, telomere bindin 89.9 0.27 9.2E-06 39.1 3.8 42 160-201 2-47 (83)
46 1h89_C C-MYB, MYB proto-oncoge 88.6 0.42 1.4E-05 41.5 4.5 43 159-202 59-102 (159)
47 1ofc_X ISWI protein; nuclear p 88.6 0.37 1.3E-05 46.9 4.6 50 156-206 108-159 (304)
48 4b4c_A Chromodomain-helicase-D 87.3 0.26 8.9E-06 44.4 2.5 48 155-202 4-55 (211)
49 3av4_A DNA (cytosine-5)-methyl 85.7 0.25 8.6E-06 56.7 1.7 51 43-93 522-585 (1330)
50 2aje_A Telomere repeat-binding 84.4 0.88 3E-05 37.7 4.0 42 159-200 14-59 (105)
51 2juh_A Telomere binding protei 79.3 1.2 4E-05 37.9 3.0 46 158-203 17-66 (121)
52 2roh_A RTBP1, telomere binding 79.2 1.4 4.9E-05 37.4 3.5 42 158-199 31-76 (122)
53 4gat_A Nitrogen regulatory pro 76.9 0.98 3.3E-05 34.5 1.7 27 252-280 8-34 (66)
54 4ft4_B DNA (cytosine-5)-methyl 75.7 0.65 2.2E-05 49.7 0.5 37 42-78 117-153 (784)
55 2y9y_A Imitation switch protei 71.3 3.2 0.00011 41.4 4.2 51 156-207 121-174 (374)
56 1gnf_A Transcription factor GA 68.8 2.7 9.2E-05 29.8 2.2 21 253-274 4-24 (46)
57 2vut_I AREA, nitrogen regulato 68.2 2 7E-05 30.0 1.5 19 255-274 3-21 (43)
58 3dfx_A Trans-acting T-cell-spe 67.2 3.2 0.00011 31.3 2.5 23 252-275 6-28 (63)
59 3hm5_A DNA methyltransferase 1 54.6 9.9 0.00034 30.8 3.5 43 159-202 31-78 (93)
60 2kae_A GATA-type transcription 52.5 6.7 0.00023 30.3 2.0 23 252-274 7-30 (71)
61 2xb0_X Chromo domain-containin 52.4 12 0.0004 35.8 4.1 44 159-202 4-51 (270)
62 1ign_A Protein (RAP1); RAP1,ye 49.9 9.7 0.00033 36.0 3.1 42 159-201 9-56 (246)
63 1z96_A DNA-damage, UBA-domain 45.9 17 0.00058 23.7 3.0 21 125-145 19-39 (40)
64 4hc9_A Trans-acting T-cell-spe 43.1 8.5 0.00029 32.1 1.4 26 253-280 59-84 (115)
65 1wj7_A Hypothetical protein (R 42.6 15 0.00052 30.3 2.8 25 124-148 54-78 (104)
66 1vg5_A RSGI RUH-014, rhomboid 41.6 16 0.00054 28.2 2.6 25 125-149 44-68 (73)
67 2jy5_A Ubiquilin-1; UBA, alter 40.1 23 0.00078 25.2 3.1 23 125-147 28-50 (52)
68 2fl7_A Regulatory protein SIR3 39.8 11 0.00039 35.2 1.8 51 43-93 130-182 (232)
69 2g3q_A Protein YBL047C; endocy 39.3 19 0.00067 24.2 2.5 22 125-146 19-40 (43)
70 1irz_A ARR10-B; helix-turn-hel 39.0 22 0.00076 26.8 3.0 21 159-179 8-28 (64)
71 2knz_A Ubiquilin-4; cytoplasm, 38.5 19 0.00067 25.6 2.5 23 125-147 27-49 (53)
72 1m4z_A Origin recognition comp 35.1 14 0.00046 34.8 1.6 51 43-93 130-182 (238)
73 1ify_A HHR23A, UV excision rep 35.0 20 0.00069 25.1 2.1 22 125-146 23-44 (49)
74 3e21_A HFAF1, FAS-associated f 31.7 35 0.0012 23.9 2.9 23 125-147 22-44 (45)
75 2bwb_A Ubiquitin-like protein 30.9 32 0.0011 23.9 2.6 21 126-146 24-44 (46)
76 1wji_A Tudor domain containing 30.9 34 0.0012 25.4 2.9 23 125-147 24-46 (63)
77 2dah_A Ubiquilin-3; UBA domain 30.6 31 0.0011 24.8 2.5 22 126-147 26-47 (54)
78 1otr_A Protein CUE2; protein-p 30.2 32 0.0011 24.5 2.5 25 123-147 19-43 (49)
79 1wr1_B Ubiquitin-like protein 28.6 35 0.0012 25.0 2.5 22 126-147 34-55 (58)
80 1vej_A Riken cDNA 4931431F19; 27.6 42 0.0014 25.9 3.0 23 126-148 46-68 (74)
81 4hc9_A Trans-acting T-cell-spe 26.3 23 0.0008 29.4 1.4 21 253-274 5-25 (115)
82 4b4c_A Chromodomain-helicase-D 26.1 1.1E+02 0.0038 26.9 6.0 52 159-214 135-189 (211)
83 4iej_A DNA methyltransferase 1 26.0 57 0.0019 26.4 3.6 44 159-202 31-78 (93)
84 2cp9_A EF-TS, EF-TSMT, elongat 25.6 47 0.0016 25.0 2.8 25 123-147 23-47 (64)
85 1wgn_A UBAP1, ubiquitin associ 24.5 46 0.0016 25.1 2.5 24 124-147 33-56 (63)
86 1q02_A Sequestosome 1; helical 22.8 63 0.0022 23.5 2.9 20 129-148 31-50 (52)
87 1wgl_A TOLL-interacting protei 22.6 58 0.002 23.9 2.8 25 124-148 25-49 (59)
88 2dna_A Unnamed protein product 22.4 60 0.002 24.6 2.9 23 126-148 36-58 (67)
89 2cwb_A Chimera of immunoglobul 21.9 50 0.0017 27.3 2.5 23 125-147 82-104 (108)
90 1oai_A Nuclear RNA export fact 21.6 73 0.0025 23.3 3.2 25 122-146 20-44 (59)
91 1v92_A NSFL1 cofactor P47; 3-h 21.2 59 0.002 21.8 2.5 22 124-145 20-41 (46)
92 2cp8_A NEXT to BRCA1 gene 1 pr 21.1 57 0.002 23.8 2.4 22 126-147 26-47 (54)
93 2dak_A Ubiquitin carboxyl-term 20.4 52 0.0018 24.0 2.2 23 125-147 24-46 (63)
No 1
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.86 E-value=2.3e-23 Score=213.42 Aligned_cols=116 Identities=24% Similarity=0.477 Sum_probs=0.0
Q ss_pred ccCCCCceeeeecCcc-hh-hhhccCCCcccCccccccccccccchHHHHHHHHHhcCCCHHHHHHhcCCCCCCcccccc
Q psy2137 80 YLNKEPRSFVVSLPST-FA-RALDCSSSVKQPSLHMSAAAASRDITLFHAMDTLDKHKYSLAEAISSLVPSTGPVLCRDE 157 (382)
Q Consensus 80 yl~keDtFfLlW~Pg~-~~-rald~~s~~~~~~l~m~~~~asrd~~l~~AL~~L~~~~ydv~~AL~~L~~~~~p~l~~d~ 157 (382)
|...++.-.|||+|.. +. ..++ ..|.+++..+++| +++||++||+++||+++||..|.+. .|.
T Consensus 124 ~~~~~~~e~LvW~P~~~l~d~~ld-------eYL~~Ars~~g~n--~EqAL~~L~~~~yDi~~AL~~L~~~-~p~----- 188 (482)
T 2xag_B 124 SQERDNLGMLVWSPNQNLSEAKLD-------EYIAIAKEKHGYN--MEQALGMLFWHKHNIEKSLADLPNF-TPF----- 188 (482)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCccceeEecCCCCCCHHHHH-------HHHHHHHHhcCcc--HHHHHHHHHHccCCHHHHHHHHhcc-ccc-----
Confidence 3334566679999963 22 1122 1234555556666 4599999999999999999999765 342
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccccccCchHHH
Q psy2137 158 MEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYVQ 211 (382)
Q Consensus 158 ~~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~WKKt~ry~~ 211 (382)
++.||++|+++|+++|.+|||+|++|++ +||+|++++||+|||+|||+.+|++
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~-~lp~Ksv~e~V~yYY~WKKt~~yk~ 241 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQ-MLPDKSIASLVKFYYSWKKTRTKTS 241 (482)
T ss_dssp ------------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHH-HcCCCCHHHHHHHhccccccccHHH
Confidence 4789999999999999999999999998 8999999999999999999999855
No 2
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.83 E-value=2e-22 Score=157.70 Aligned_cols=65 Identities=80% Similarity=1.295 Sum_probs=60.9
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccccccCchHHHHHHHHHH
Q psy2137 154 CRDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYVQQKRVKAV 218 (382)
Q Consensus 154 ~~d~~~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~WKKt~ry~~~kr~k~~ 218 (382)
+++.++.||++|+++|++||.+|||||+.|++++||+|++++||+|||+|||+++|+|++|++++
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~y~q~~r~~~~ 68 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKRSGPS 68 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHTCCSSCSCCCCCCC
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcCCchHHHHHHhhhc
Confidence 46788999999999999999999999999999779999999999999999999999999988753
No 3
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3e-19 Score=136.83 Aligned_cols=57 Identities=35% Similarity=0.708 Sum_probs=52.2
Q ss_pred CCccccccCCCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccccccCchH
Q psy2137 150 GPVLCRDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRY 209 (382)
Q Consensus 150 ~p~l~~d~~~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~WKKt~ry 209 (382)
+|.+.. +.||++|+++|++||.+|||||+.|++++||+|++++||+|||+|||++++
T Consensus 4 ~p~~~~---~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~~ 60 (63)
T 2yqk_A 4 GSSGIE---KCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTSGP 60 (63)
T ss_dssp CCCCCC---CSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHCSSCC
T ss_pred CCCcCC---CCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccCCCCC
Confidence 455544 899999999999999999999999998779999999999999999999875
No 4
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=99.65 E-value=3e-17 Score=135.17 Aligned_cols=54 Identities=33% Similarity=0.585 Sum_probs=47.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccccccCchHH
Q psy2137 156 DEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYV 210 (382)
Q Consensus 156 d~~~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~WKKt~ry~ 210 (382)
+.++.||++|+++|++++.+|||+|++|++ +||+||+++||+|||+|||+.+|+
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~-~l~~Kt~~~cV~~YY~~Kk~~~Yk 94 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIAS-FLERKTVAECVLYYYLTKKNENYK 94 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHH-TCTTCCHHHHHHHHHHHSCC----
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHH-HcCCCCHHHHHHHHhccccCcCCC
Confidence 446899999999999999999999999988 899999999999999999999984
No 5
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=115.71 Aligned_cols=53 Identities=26% Similarity=0.554 Sum_probs=49.9
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccccccCc
Q psy2137 154 CRDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTD 207 (382)
Q Consensus 154 ~~d~~~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~WKKt~ 207 (382)
.++.+..||++|.++|++++.+|||+|+.|++ +||+||+.+||+|||+|||+.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~-~l~~rt~~~~v~~Yy~~Kk~~ 60 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPKNFGLIAS-YLERKSVPDCVLYYYLTKKNE 60 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHH-HCTTSCHHHHHHHHHHHTCCC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCHHHHHH-HcCCCCHHHHHHHHHHhcCCC
Confidence 35667999999999999999999999999998 899999999999999999986
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.23 E-value=8.6e-13 Score=135.46 Aligned_cols=66 Identities=21% Similarity=0.557 Sum_probs=0.0
Q ss_pred cccccccccccCCcccccCCCCcC-CCCCCCCCcccCcCcceeeeCCCCCCchhHHHHHHHHhhhhhhc
Q psy2137 300 TLLADKGEIRVGSKYQSDITPYLG-EASKDPNCRESKDFETLVWTPHHSLTDKQIDQFLVISRSVGKFQ 367 (382)
Q Consensus 300 tL~ad~GeIRVG~~yQA~iP~~~~-~~~~~~~~~~~~~~e~LvW~P~~~l~D~~ld~yl~~Ars~~~fa 367 (382)
.+..++|+||||++|||+||++++ +.+.+ .++.+++++|||.|.+.|+|.+||+||.+||++++|.
T Consensus 94 d~~~~~~eIRVG~~YQAeIPe~~~~~~~~~--~~~~~~~e~LvW~P~~~l~d~~ldeYL~~Ars~~g~n 160 (482)
T 2xag_B 94 DEEHGGGGMRVGPQYQAVVPDFDPAKLARR--SQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYN 160 (482)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccCCCCCCCCCccCccCCCccCCCcccc--ccccCccceeEecCCCCCCHHHHHHHHHHHHHhcCcc
Confidence 668889999999999999999994 33323 2556889999999998899999999999999997764
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.81 E-value=2.3e-09 Score=100.47 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=51.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccccccCchHHHH
Q psy2137 156 DEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYVQQ 212 (382)
Q Consensus 156 d~~~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~WKKt~ry~~~ 212 (382)
.....||++|..+|++|+.+|||+|..|.+ +|++||+.+|+.|||.|||.-++.+.
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk-~VgTKT~~QcKnfY~~~kKRlnLD~i 186 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISD-VIGNKSVVQVKNFFVNYRRRFNIDEV 186 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHH-HHSSCCHHHHHHHHHHTTTTTTHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHH-HcCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 345899999999999999999999999999 79999999999999999998777553
No 8
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.53 E-value=5.7e-05 Score=59.33 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCC----chhhhcccCCCcChhhhhhhcccc
Q psy2137 159 EEWSASEANLFEEALEKYGKD----FNDIRNDFLPWKTLKNIIEYYYMW 203 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKd----F~~I~k~~lp~Ksv~eiVefYY~W 203 (382)
..||.+|.++|++||..|+++ +..|.. .||.||..||++.|-.-
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 689999999999999999985 788999 79999999999888654
No 9
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.51 E-value=2.8e-05 Score=61.04 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC----chhhhcccCCCcChhhhhhhccc
Q psy2137 158 MEEWSASEANLFEEALEKYGKD----FNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 158 ~~~WS~eE~~~Fe~al~~yGKd----F~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
...||.+|-++||+||.+|+++ +.+|.. .||.||+.||++.|=+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHHH
Confidence 3679999999999999999997 789999 8999999999999854
No 10
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.40 E-value=8.3e-05 Score=58.95 Aligned_cols=43 Identities=30% Similarity=0.477 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhcc
Q psy2137 158 MEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYY 201 (382)
Q Consensus 158 ~~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY 201 (382)
...||++|-.+|.+++.+||.++..|.+ +|++||..+|.+.|.
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G~~W~~IA~-~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYKDDWNKVSE-HVGSRTQDECILHFL 60 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSSSCHHHHHH-HHSSCCHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHhCCCHHHHHH-HcCCCCHHHHHHHHH
Confidence 3789999999999999999999999999 799999999988764
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.24 E-value=0.00021 Score=55.21 Aligned_cols=42 Identities=26% Similarity=0.606 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY 201 (382)
..||++|-.+|.+++.+||+++..|.+ +||.||-.+|-.+|+
T Consensus 10 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~-~~~~Rt~~q~k~r~~ 51 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKFGRRWTKISK-LIGSRTVLQVKSYAR 51 (72)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHH-HHSSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHH-HcCCCCHHHHHHHHH
Confidence 789999999999999999999999999 899999999988776
No 12
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.33 E-value=4.5e-05 Score=61.58 Aligned_cols=50 Identities=18% Similarity=0.452 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccccccCchH
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRY 209 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~WKKt~ry 209 (382)
..||++|-.+|.+++.+||+++..|.+ +||.||..+|..+|+...+....
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGRNWSAIAR-MVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 689999999999999999999999999 79999999999999988766544
No 13
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.06 E-value=0.0003 Score=55.04 Aligned_cols=44 Identities=27% Similarity=0.552 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CchhhhcccCCCcChhhhhhhccc
Q psy2137 158 MEEWSASEANLFEEALEKYGK----DFNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 158 ~~~WS~eE~~~Fe~al~~yGK----dF~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
...||.+|-++|++++.+||+ .+..|.+ +||.||..+|.+.|..
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKL 65 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHH
Confidence 378999999999999999994 5889999 8999999999988753
No 14
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.00043 Score=53.59 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHhC------CCchhhhcccCCCcChhhhhhhc
Q psy2137 159 EEWSASEANLFEEALEKYG------KDFNDIRNDFLPWKTLKNIIEYY 200 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yG------KdF~~I~k~~lp~Ksv~eiVefY 200 (382)
..||++|-.+|++++.+|| +++..|.+ +||.||..+|.+.|
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQV 55 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHH
Confidence 6899999999999999999 78999999 79999999998877
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.75 E-value=0.0011 Score=49.42 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCchhhhcccCCCcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYG-KDFNDIRNDFLPWKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yG-KdF~~I~k~~lp~Ksv~eiVefYY 201 (382)
..||++|-.++.+++.+|| +++..|.+ +||.||-.+|.+.|.
T Consensus 9 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 9 PSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYM 51 (60)
T ss_dssp SSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHH
Confidence 6799999999999999999 79999999 799999999988774
No 16
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.68 E-value=0.0011 Score=49.15 Aligned_cols=41 Identities=29% Similarity=0.539 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCchhhhcccCC-CcChhhhhhhc
Q psy2137 159 EEWSASEANLFEEALEKYG-KDFNDIRNDFLP-WKTLKNIIEYY 200 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yG-KdF~~I~k~~lp-~Ksv~eiVefY 200 (382)
..||++|-.++.+++.+|| .++..|.+ +|+ .||-.+|.+.|
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHY 52 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHH
Confidence 5799999999999999999 89999999 799 99999998765
No 17
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.65 E-value=0.0012 Score=53.86 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC----CchhhhcccCCCcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYGK----DFNDIRNDFLPWKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGK----dF~~I~k~~lp~Ksv~eiVefYY 201 (382)
..||.+|-++|++++.+||+ .+..|.+ +||.||..+|.+.|-
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYE 54 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHH
Confidence 67999999999999999985 3789999 799999999988764
No 18
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=96.57 E-value=0.00037 Score=62.29 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=42.7
Q ss_pred ccccccccccccccccccccCceeeeecccchhhh-hccCCCCcee--eeecC--cchh
Q psy2137 44 KQRELFLSRQVETLPATHIRGKCSVTLLNETESLL-SYLNKEPRSF--VVSLP--STFA 97 (382)
Q Consensus 44 ~~ReLf~S~~~e~~P~t~iRGkC~v~~~~e~e~l~-~yl~keDtFf--LlW~P--g~~~ 97 (382)
-.||||+|.+.++.|+..|.|||.|..+++..... .....+|+|| ..|+| ++|.
T Consensus 82 ~~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~ 140 (174)
T 1w4s_A 82 LEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFK 140 (174)
T ss_dssp ETTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEE
T ss_pred CCCeeEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEc
Confidence 38999999999999999999999999988765432 2344568888 88888 3454
No 19
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.50 E-value=0.0015 Score=50.97 Aligned_cols=40 Identities=13% Similarity=0.351 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCC----chhhhcccCCCcChhhhhhhc
Q psy2137 159 EEWSASEANLFEEALEKYGKD----FNDIRNDFLPWKTLKNIIEYY 200 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKd----F~~I~k~~lp~Ksv~eiVefY 200 (382)
..||.+|.++|++++.+|+++ +..|.+ ++ .||..||.++|
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y 52 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKA 52 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHH
Confidence 679999999999999999854 678999 56 79999998754
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=96.45 E-value=0.0025 Score=45.75 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CchhhhcccCCCcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYGK-DFNDIRNDFLPWKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGK-dF~~I~k~~lp~Ksv~eiVefYY 201 (382)
..||++|-.++.+++.+||. ++..|.+ +||.|+-.+|-+.|.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~ 46 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQ 46 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHH
Confidence 57999999999999999998 9999999 799999999987764
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.44 E-value=0.0031 Score=46.60 Aligned_cols=43 Identities=14% Similarity=0.366 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCchhhhcccCCCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYG-KDFNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yG-KdF~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
..||++|-.++.+++.+|| +++..|.+ +||.|+-.+|-+.|+.
T Consensus 9 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLR 52 (60)
T ss_dssp SCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHH
Confidence 7899999999999999999 69999999 7999999999888754
No 22
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=96.43 E-value=0.0011 Score=73.94 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=44.5
Q ss_pred hhhccccccccccccccccccccCceeeeecccchhh-hhccCC-CCcee--eeecC
Q psy2137 41 HQLKQRELFLSRQVETLPATHIRGKCSVTLLNETESL-LSYLNK-EPRSF--VVSLP 93 (382)
Q Consensus 41 ~~~~~ReLf~S~~~e~~P~t~iRGkC~v~~~~e~e~l-~~yl~k-eDtFf--LlW~P 93 (382)
+....||||+|.+.+++|+++|+|||.|.+.+++... ..|... +|.|| .+|+|
T Consensus 437 ~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~~~~~~p~~fyf~~~Yd~ 493 (1002)
T 3swr_A 437 YHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNA 493 (1002)
T ss_dssp SSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHHHHHTSSSEEEEEEEEET
T ss_pred ccCCcceEEEecceeccCHHHcceEEEEEEeccccccchhhccCCCCeEEEEEEEeC
Confidence 3446799999999999999999999999999998744 447755 57887 78888
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.28 E-value=0.0045 Score=44.43 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CchhhhcccCCCcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYGK-DFNDIRNDFLPWKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGK-dF~~I~k~~lp~Ksv~eiVefYY 201 (382)
..||++|-.++.+++.+||. ++..|.+ +||.|+-.+|-+.|.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWH 46 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHH
Confidence 57999999999999999996 7999999 799999999988775
No 24
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.0071 Score=46.08 Aligned_cols=43 Identities=26% Similarity=0.530 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCchhhhcccCCCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYG-KDFNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yG-KdF~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
..||++|-.++.+++.+|| +++..|.+ +||.++-.+|-+.|..
T Consensus 10 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYE 53 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHH
Confidence 7899999999999999999 79999999 7999999999877643
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.52 E-value=0.012 Score=47.77 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhcccc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMW 203 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~W 203 (382)
..||++|-.++.+++.+||..+..|.+ +||.+|-.+|-..|+..
T Consensus 57 ~~Wt~eEd~~L~~~~~~~G~~W~~Ia~-~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 57 TSWTEEEDRIIYQAHKRLGNRWAEIAK-LLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCHHHHHT-TCTTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCCHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 789999999999999999999999999 79999999999988753
No 26
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=95.26 E-value=0.013 Score=45.64 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccccccC
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTT 206 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~WKKt 206 (382)
..||++|-++..+.+.+||..+..|.+ ++ .+|-.+|-..|+.-|++
T Consensus 24 ~~wT~EED~~L~~l~~~~G~kW~~IA~-~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 24 GKYTPEEIEKLKELRIKHGNDWATIGA-AL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CSSCHHHHHHHHHHHHHHSSCHHHHHH-HH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHH-Hh-CCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999 68 99999999999887765
No 27
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.12 E-value=0.024 Score=47.83 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccccc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWK 204 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~WK 204 (382)
..||++|-.++.+++.+||+.+..|.+ +||.+|-.+|-..|+...
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~-~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAK-LLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGG-GSTTCCHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999999 799999999999887653
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=94.82 E-value=0.02 Score=47.00 Aligned_cols=43 Identities=30% Similarity=0.611 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
..||++|-.++.+++.+||..+..|.+ +||.+|-.+|-..|+.
T Consensus 54 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~-~l~gRt~~~~k~rw~~ 96 (107)
T 2k9n_A 54 DPWSPEEDMLLDQKYAEYGPKWNKISK-FLKNRSDNNIRNRWMM 96 (107)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHH-HHSSSCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCcCHHHHHH-HCCCCCHHHHHHHHHH
Confidence 789999999999999999999999999 7999999999887764
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=94.81 E-value=0.027 Score=47.55 Aligned_cols=43 Identities=26% Similarity=0.542 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
..||++|-.++.+++.+||+.+..|.+ +||.||-.+|-..|+.
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~~W~~Ia~-~l~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGRQWAIIAK-FFPGRTDIHIKNRWVT 105 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHH-HcCCCCHHHHHHHHHH
Confidence 689999999999999999999999999 8999999999877754
No 30
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=94.77 E-value=0.02 Score=41.23 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCchhhhcccCC--CcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYG-KDFNDIRNDFLP--WKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yG-KdF~~I~k~~lp--~Ksv~eiVefYY~ 202 (382)
..||++|-.+..+++.+|| ++...|.+ .+| .+|-.+|-+-|..
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~ 48 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRT 48 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHH
Confidence 5699999999999999999 69999999 699 8999999776544
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=93.96 E-value=0.059 Score=45.43 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
..||++|-.+..+++.+||.++..|.+ .+|.++..+|-+.|..
T Consensus 12 ~~WT~eED~~L~~~v~~~G~~W~~Ia~-~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 12 QKFTPEEDEMLKRAVAQHGSDWKMIAA-TFPNRNARQCRDRWKN 54 (126)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCHHHHHH-TCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHH-HcCCCCHHHHHHHHhh
Confidence 679999999999999999999999999 7999999999887764
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=93.90 E-value=0.051 Score=44.08 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CchhhhcccCCCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYGK-DFNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGK-dF~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
..||++|-.++.+++.+||. ++..|.+ +||.++..+|-+.|..
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHN 48 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHh
Confidence 57999999999999999996 7999999 7999999999887643
No 33
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=93.68 E-value=0.084 Score=39.95 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCchhhhcccCC--CcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYG-KDFNDIRNDFLP--WKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yG-KdF~~I~k~~lp--~Ksv~eiVefYY 201 (382)
..||++|-.+..+++.+|| .+...|.+ ++| .++-.+|-+.|.
T Consensus 11 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~ 55 (69)
T 1ity_A 11 QAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWR 55 (69)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHH
Confidence 7899999999999999999 69999999 799 899999876554
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=93.61 E-value=0.065 Score=45.40 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
..||++|-.++.+++.+||..+..|.+ +||.+|-.+|-..|+.
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~~W~~Ia~-~l~gRt~~~~k~rw~~ 97 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGSKWSVIAK-LIPGRTDNAIKNRWNS 97 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCSCHHHHTT-TSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHH-HcCCCCHHHHHHHHHH
Confidence 579999999999999999999999999 8999999999887754
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=93.60 E-value=0.072 Score=46.42 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhccccc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWK 204 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY~WK 204 (382)
..||++|-.++.+++.+||..+..|.+ +||.+|-.+|-..|+...
T Consensus 111 ~~WT~eEd~~L~~~~~~~g~~W~~Ia~-~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 111 TSWTEEEDRIIYQAHKRLGNRWAEIAK-LLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHHT-TSTTCCHHHHHHHHHTTT
T ss_pred cCCChHHHHHHHHHHHHHCCCHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999999 799999999999888654
No 36
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.60 E-value=0.046 Score=40.99 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccCCCcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~lp~Ksv~eiVefYY 201 (382)
..||++|-.++.+++..||.++..|.+ ++.||-.+|-+.|.
T Consensus 10 ~~WT~eED~~L~~~~~~~g~~W~~Ia~--~~gRt~~qcr~Rw~ 50 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMPTQWRTIAP--IIGRTAAQCLEHYE 50 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTTCHHHHHH--HHSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHhc--ccCcCHHHHHHHHH
Confidence 679999999999999999999999999 56799999987765
No 37
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=93.57 E-value=0.042 Score=41.51 Aligned_cols=42 Identities=21% Similarity=0.489 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCchhhhcccCC--CcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYG-KDFNDIRNDFLP--WKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yG-KdF~~I~k~~lp--~Ksv~eiVefYY 201 (382)
..||++|-.+..+++.+|| +++..|.+ .+| .+|-.+|-+-|.
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHH
Confidence 6799999999999999999 58999998 454 889888865553
No 38
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=93.10 E-value=0.066 Score=43.80 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CchhhhcccCCCcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYGK-DFNDIRNDFLPWKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGK-dF~~I~k~~lp~Ksv~eiVefYY 201 (382)
..||++|-.++.+++.+||. ++..|.+ +||.++..+|-+-|.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~ 44 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWN 44 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHH
Confidence 35999999999999999995 8999999 799999999987664
No 39
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=92.96 E-value=0.096 Score=44.04 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CchhhhcccCCCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYGK-DFNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGK-dF~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
..||++|-.++.+++.+||. ++..|.+ +||.++..+|-+.|..
T Consensus 28 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 28 GPWTKEEDQRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHN 71 (128)
T ss_dssp SCCCHHHHHHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHH
Confidence 67999999999999999995 7999999 7999999999887754
No 40
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=92.56 E-value=0.036 Score=63.47 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=42.2
Q ss_pred hhccccccccccccccccccccCceeeeecccchh-hhhccCC-CCcee--eeecC
Q psy2137 42 QLKQRELFLSRQVETLPATHIRGKCSVTLLNETES-LLSYLNK-EPRSF--VVSLP 93 (382)
Q Consensus 42 ~~~~ReLf~S~~~e~~P~t~iRGkC~v~~~~e~e~-l~~yl~k-eDtFf--LlW~P 93 (382)
....||||.|.+.++.|+..|+|||.|+++.+... +..|... +|.|| ..++|
T Consensus 749 ~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~~~g~d~Fy~~~~Yd~ 804 (1330)
T 3av4_A 749 HTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNS 804 (1330)
T ss_dssp TSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHHHTSTTEEEESCEEET
T ss_pred ccCcceEEeeccceecCHHHcCceEEEEecccccccccccccCCCCeEEEEEEecc
Confidence 35779999999999999999999999999998765 3456655 68887 34555
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=92.56 E-value=0.11 Score=43.91 Aligned_cols=42 Identities=24% Similarity=0.522 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCchhhhcccCCCcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYG-KDFNDIRNDFLPWKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yG-KdF~~I~k~~lp~Ksv~eiVefYY 201 (382)
-.||++|-.+..+++.+|| .++..|.+ +||.++..+|-+-|.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~ 45 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWF 45 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHh
Confidence 3599999999999999999 78999999 799999999988764
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=92.28 E-value=0.12 Score=39.21 Aligned_cols=42 Identities=17% Similarity=0.345 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcc--cCCCcChhhhhhhc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRND--FLPWKTLKNIIEYY 200 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~--~lp~Ksv~eiVefY 200 (382)
..||++|.+...+|+.+||+....|..+ |++.+|--+|=.=|
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~ 52 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKY 52 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHH
Confidence 7899999999999999999999999942 67888877775333
No 43
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=92.15 E-value=0.045 Score=61.05 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=40.3
Q ss_pred hccccccccccccccccccccCceeeeeccc----------chhhhhccCCCCcee--eeecCc
Q psy2137 43 LKQRELFLSRQVETLPATHIRGKCSVTLLNE----------TESLLSYLNKEPRSF--VVSLPS 94 (382)
Q Consensus 43 ~~~ReLf~S~~~e~~P~t~iRGkC~v~~~~e----------~e~l~~yl~keDtFf--LlW~Pg 94 (382)
...||||+|.+-+..|+..|.|||.|.++.. .++.......+|+|| +.|+|.
T Consensus 211 ~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~ 274 (1002)
T 3swr_A 211 SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQD 274 (1002)
T ss_dssp SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETT
T ss_pred CCCCceEeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCC
Confidence 4569999999999999999999999997644 122222334478999 899994
No 44
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=91.69 E-value=0.087 Score=47.09 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=42.8
Q ss_pred cccccccccc---ccccccccCceeeeecccchhhhhccCCCCcee--eeecCcch
Q psy2137 46 RELFLSRQVE---TLPATHIRGKCSVTLLNETESLLSYLNKEPRSF--VVSLPSTF 96 (382)
Q Consensus 46 ReLf~S~~~e---~~P~t~iRGkC~v~~~~e~e~l~~yl~keDtFf--LlW~Pg~~ 96 (382)
.|+|.+.+.+ ..+|-.|-|+|.|..+..-+.++.=+..+++|| |-|+=..|
T Consensus 102 qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k~f 157 (163)
T 4dov_A 102 QEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKKDF 157 (163)
T ss_dssp TEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSSCE
T ss_pred CeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCCcc
Confidence 4999988874 788999999999999887777766677899999 99986555
No 45
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=89.89 E-value=0.27 Score=39.08 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHhCC-Cchhhhcc---cCCCcChhhhhhhcc
Q psy2137 160 EWSASEANLFEEALEKYGK-DFNDIRND---FLPWKTLKNIIEYYY 201 (382)
Q Consensus 160 ~WS~eE~~~Fe~al~~yGK-dF~~I~k~---~lp~Ksv~eiVefYY 201 (382)
.||++|-....+++.+||. +...|.+. +++.+|-.+|=..|.
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWr 47 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWK 47 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHH
Confidence 5999999999999999998 99999884 278888888855443
No 46
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=88.62 E-value=0.42 Score=41.49 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CchhhhcccCCCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYGK-DFNDIRNDFLPWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGK-dF~~I~k~~lp~Ksv~eiVefYY~ 202 (382)
..||++|-.++.+++.+||. +...|.+ +||.++-.+|-+.|+.
T Consensus 59 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 59 GPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHN 102 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHH
Confidence 68999999999999999995 7999999 7999999999887753
No 47
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=88.62 E-value=0.37 Score=46.95 Aligned_cols=50 Identities=32% Similarity=0.613 Sum_probs=44.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CchhhhcccCCCcChhhhhhhccc-cccC
Q psy2137 156 DEMEEWSASEANLFEEALEKYGK-DFNDIRNDFLPWKTLKNIIEYYYM-WKTT 206 (382)
Q Consensus 156 d~~~~WS~eE~~~Fe~al~~yGK-dF~~I~k~~lp~Ksv~eiVefYY~-WKKt 206 (382)
.+...||..|-..|..|..+||. ++..|.. .|+.||..||.+||=. |++-
T Consensus 108 eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 108 QGFTAWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp SSCTTCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred hhhcccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence 45678999999999999999997 6889999 5999999999998876 7765
No 48
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=87.34 E-value=0.26 Score=44.45 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=37.7
Q ss_pred cccCCCCCHHHHHHHHHHHHHhC---CCchhhhcc-cCCCcChhhhhhhccc
Q psy2137 155 RDEMEEWSASEANLFEEALEKYG---KDFNDIRND-FLPWKTLKNIIEYYYM 202 (382)
Q Consensus 155 ~d~~~~WS~eE~~~Fe~al~~yG---KdF~~I~k~-~lp~Ksv~eiVefYY~ 202 (382)
++.+..||..|.+.|.+|+.+|| ..+-.|.++ -|+.|+..+|-+||-.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~ 55 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGEL 55 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 45678999999999999999999 346778764 2789999999888766
No 49
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=85.71 E-value=0.25 Score=56.66 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=36.9
Q ss_pred hccccccccccccccccccccCceeeeecccchhh-------hhc----cCCCCcee--eeecC
Q psy2137 43 LKQRELFLSRQVETLPATHIRGKCSVTLLNETESL-------LSY----LNKEPRSF--VVSLP 93 (382)
Q Consensus 43 ~~~ReLf~S~~~e~~P~t~iRGkC~v~~~~e~e~l-------~~y----l~keDtFf--LlW~P 93 (382)
...||||+|.+.|..|+..|.|||.|.++.+.++- .+. ....+.|| .+|+|
T Consensus 522 ~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~ 585 (1330)
T 3av4_A 522 SDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQ 585 (1330)
T ss_dssp SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEET
T ss_pred cCCCeEEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECC
Confidence 56799999999999999999999999987653221 111 12345687 88888
No 50
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=84.38 E-value=0.88 Score=37.72 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC-Cchhhhccc---CCCcChhhhhhhc
Q psy2137 159 EEWSASEANLFEEALEKYGK-DFNDIRNDF---LPWKTLKNIIEYY 200 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGK-dF~~I~k~~---lp~Ksv~eiVefY 200 (382)
..||++|-....+|+.+||. .+..|.+.+ ++.+|-.+|=.-|
T Consensus 14 ~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrW 59 (105)
T 2aje_A 14 RPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKW 59 (105)
T ss_dssp CSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHH
Confidence 78999999999999999998 999999843 2677777764443
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=79.35 E-value=1.2 Score=37.91 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-Cchhhhccc---CCCcChhhhhhhcccc
Q psy2137 158 MEEWSASEANLFEEALEKYGK-DFNDIRNDF---LPWKTLKNIIEYYYMW 203 (382)
Q Consensus 158 ~~~WS~eE~~~Fe~al~~yGK-dF~~I~k~~---lp~Ksv~eiVefYY~W 203 (382)
...||++|-....+++.+||. .+..|.+.+ ++.+|-.+|=..|...
T Consensus 17 r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl 66 (121)
T 2juh_A 17 RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 66 (121)
T ss_dssp SCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 378999999999999999998 999999853 4788888886555443
No 52
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=79.23 E-value=1.4 Score=37.39 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-Cchhhhccc---CCCcChhhhhhh
Q psy2137 158 MEEWSASEANLFEEALEKYGK-DFNDIRNDF---LPWKTLKNIIEY 199 (382)
Q Consensus 158 ~~~WS~eE~~~Fe~al~~yGK-dF~~I~k~~---lp~Ksv~eiVef 199 (382)
...||++|-....+++.+||. ++..|.+.+ ++.+|-.+|=.-
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdR 76 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDK 76 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHH
Confidence 478999999999999999997 999998842 377777777543
No 53
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=76.89 E-value=0.98 Score=34.49 Aligned_cols=27 Identities=4% Similarity=-0.252 Sum_probs=21.6
Q ss_pred CCCCccceecccccCccccCCCCCccccc
Q psy2137 252 STSGVVVLEIERSFDDYKFGHAFSTRLAM 280 (382)
Q Consensus 252 ~~~~C~~C~t~~S~qWy~~gp~~~~~~~~ 280 (382)
....|.+|.|+++++|.+ ||..- .||-
T Consensus 8 ~~~~C~~C~t~~Tp~WR~-gp~G~-~LCN 34 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRR-NPEGQ-PLCN 34 (66)
T ss_dssp SSCCCTTTCCCCCSSCEE-ETTTE-EECH
T ss_pred CCCCCCCCCCCCCCcCCc-CCCCC-CccH
Confidence 457899999999999999 77654 5553
No 54
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=75.70 E-value=0.65 Score=49.70 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.1
Q ss_pred hhccccccccccccccccccccCceeeeecccchhhh
Q psy2137 42 QLKQRELFLSRQVETLPATHIRGKCSVTLLNETESLL 78 (382)
Q Consensus 42 ~~~~ReLf~S~~~e~~P~t~iRGkC~v~~~~e~e~l~ 78 (382)
....|+||+|...++.|+..|-|||.|.++....++.
T Consensus 117 ~~d~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~ 153 (784)
T 4ft4_B 117 KHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPK 153 (784)
T ss_dssp CCCTTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHH
T ss_pred ccccceEEEeCcEEEechHHeeeeEEEEeeCccccch
Confidence 3467999999999999999999999999987644433
No 55
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=71.25 E-value=3.2 Score=41.45 Aligned_cols=51 Identities=25% Similarity=0.528 Sum_probs=44.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCC-chhhhcccCC-CcChhhhhhhccc-cccCc
Q psy2137 156 DEMEEWSASEANLFEEALEKYGKD-FNDIRNDFLP-WKTLKNIIEYYYM-WKTTD 207 (382)
Q Consensus 156 d~~~~WS~eE~~~Fe~al~~yGKd-F~~I~k~~lp-~Ksv~eiVefYY~-WKKt~ 207 (382)
.....||..|-..|..|..+||.+ +..|..+ |. .|+..||-+|+=. |++-.
T Consensus 121 eGF~~WnrrDF~~FI~a~~kyGR~d~~~IA~e-v~~~Kt~eEV~~Y~~vFw~Ry~ 174 (374)
T 2y9y_A 121 EGFTNWNKLEFRKFITVSGKYGRNSIQAIARE-LAPGKTLEEVRAYAKAFWSNIE 174 (374)
T ss_dssp HCCCCSCHHHHHHHHHHHHHHCTTCHHHHHSS-CCCSSSHHHHHHHHHHHHHTCS
T ss_pred hhhcccCHHHHHHHHHHHHHhCHhHHHHHHHH-HccCCCHHHHHHHHHHHHHhhh
Confidence 456889999999999999999966 9999994 76 9999999998866 77653
No 56
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=68.76 E-value=2.7 Score=29.84 Aligned_cols=21 Identities=5% Similarity=-0.274 Sum_probs=18.0
Q ss_pred CCCccceecccccCccccCCCC
Q psy2137 253 TSGVVVLEIERSFDDYKFGHAF 274 (382)
Q Consensus 253 ~~~C~~C~t~~S~qWy~~gp~~ 274 (382)
...|.+|.|+++.+|.+ ||..
T Consensus 4 ~~~C~~C~tt~Tp~WR~-gp~G 24 (46)
T 1gnf_A 4 ARECVNCGATATPLWRR-DRTG 24 (46)
T ss_dssp SCCCTTTCCCCCSSCBC-CTTC
T ss_pred CCCCCCcCCCCCCcCcc-CCCC
Confidence 35799999999999999 7755
No 57
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=68.18 E-value=2 Score=30.01 Aligned_cols=19 Identities=0% Similarity=-0.422 Sum_probs=16.6
Q ss_pred CccceecccccCccccCCCC
Q psy2137 255 GVVVLEIERSFDDYKFGHAF 274 (382)
Q Consensus 255 ~C~~C~t~~S~qWy~~gp~~ 274 (382)
.|.+|.|+++.+|.+ ||..
T Consensus 3 ~C~~C~tt~Tp~WR~-gp~G 21 (43)
T 2vut_I 3 TCTNCFTQTTPLWRR-NPEG 21 (43)
T ss_dssp CCSSSCCCCCSCCEE-CTTS
T ss_pred cCCccCCCCCCcccc-CCCC
Confidence 589999999999999 7654
No 58
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=67.21 E-value=3.2 Score=31.34 Aligned_cols=23 Identities=0% Similarity=-0.218 Sum_probs=19.0
Q ss_pred CCCCccceecccccCccccCCCCC
Q psy2137 252 STSGVVVLEIERSFDDYKFGHAFS 275 (382)
Q Consensus 252 ~~~~C~~C~t~~S~qWy~~gp~~~ 275 (382)
....|.+|.|++.++|.+ ||.+-
T Consensus 6 ~~~~C~~C~tt~Tp~WR~-gp~G~ 28 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRR-NANGD 28 (63)
T ss_dssp TTCCCTTTCCSCCSSCCC-CTTSC
T ss_pred CCCcCCCcCCCCCCccCC-CCCCC
Confidence 346799999999999999 77654
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=54.62 E-value=9.9 Score=30.76 Aligned_cols=43 Identities=16% Similarity=0.424 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccC-----CCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFL-----PWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~l-----p~Ksv~eiVefYY~ 202 (382)
+.||.+|-....+-..+||--|..|.. .. +.+|+-+|-+-||.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~ 78 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHD-RYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHH-HSCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehh-hhccCCCCCCCHHHHHHHHHH
Confidence 789999999999999999999999988 45 46888888776664
No 60
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=52.53 E-value=6.7 Score=30.27 Aligned_cols=23 Identities=0% Similarity=-0.149 Sum_probs=17.9
Q ss_pred CCCCccceecccccCcccc-CCCC
Q psy2137 252 STSGVVVLEIERSFDDYKF-GHAF 274 (382)
Q Consensus 252 ~~~~C~~C~t~~S~qWy~~-gp~~ 274 (382)
....|.+|.|+++++|.+. ++..
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g 30 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG 30 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC
T ss_pred CCCcCCccCCCCCCccccCCCCCC
Confidence 3467999999999999993 4444
No 61
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=52.39 E-value=12 Score=35.78 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC---Cchhhhcc-cCCCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYGK---DFNDIRND-FLPWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGK---dF~~I~k~-~lp~Ksv~eiVefYY~ 202 (382)
-.||+.|++.|.++|.+||. -+-.|..+ -|+.|+...|-+.|=.
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~ 51 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDE 51 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 56999999999999999994 45677665 4899999999887754
No 62
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=49.89 E-value=9.7 Score=35.95 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCC------chhhhcccCCCcChhhhhhhcc
Q psy2137 159 EEWSASEANLFEEALEKYGKD------FNDIRNDFLPWKTLKNIIEYYY 201 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKd------F~~I~k~~lp~Ksv~eiVefYY 201 (382)
..||++|-+.-.+.+.+||.. +..|.+ +||.+|-.+|-..|.
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~ 56 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFR 56 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHH
Confidence 579999999999999999875 889999 899999999976554
No 63
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=45.92 E-value=17 Score=23.72 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCHHHHHHhc
Q psy2137 125 FHAMDTLDKHKYSLAEAISSL 145 (382)
Q Consensus 125 ~~AL~~L~~~~ydv~~AL~~L 145 (382)
++|...|..+++|++.|+..|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 478889999999999998876
No 64
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=43.05 E-value=8.5 Score=32.12 Aligned_cols=26 Identities=0% Similarity=-0.224 Sum_probs=21.3
Q ss_pred CCCccceecccccCccccCCCCCccccc
Q psy2137 253 TSGVVVLEIERSFDDYKFGHAFSTRLAM 280 (382)
Q Consensus 253 ~~~C~~C~t~~S~qWy~~gp~~~~~~~~ 280 (382)
...|.+|.|+.+++|.+ ||.. ..||-
T Consensus 59 ~~~C~~C~t~~tp~WRr-~~~g-~~lCN 84 (115)
T 4hc9_A 59 GTSCANCQTTTTTLWRR-NANG-DPVCN 84 (115)
T ss_dssp TCCCTTTCCSCCSSCEE-CTTS-CEECH
T ss_pred cccCCCcCCCCcceeEE-CCCC-CCcch
Confidence 46799999999999999 8877 55543
No 65
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.62 E-value=15 Score=30.30 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHhcCCC
Q psy2137 124 LFHAMDTLDKHKYSLAEAISSLVPS 148 (382)
Q Consensus 124 l~~AL~~L~~~~ydv~~AL~~L~~~ 148 (382)
.+.|...|+++++|+..|+..|...
T Consensus 54 eeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 54 QDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4589999999999999999999753
No 66
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=41.59 E-value=16 Score=28.17 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCCHHHHHHhcCCCC
Q psy2137 125 FHAMDTLDKHKYSLAEAISSLVPST 149 (382)
Q Consensus 125 ~~AL~~L~~~~ydv~~AL~~L~~~~ 149 (382)
++|...|..+++|++.|++.|....
T Consensus 44 ~~a~~AL~~~~~nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 44 TQVEVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 4888999999999999999987543
No 67
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=40.08 E-value=23 Score=25.19 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCCHHHHHHhcCC
Q psy2137 125 FHAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 125 ~~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
+.|+..|..+++|++.|++.|..
T Consensus 28 ~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 28 EANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHh
Confidence 37899999999999999999864
No 68
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=39.79 E-value=11 Score=35.20 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=38.3
Q ss_pred hccccccccccccccccccccCceeeeecccchhhhhccCCCCcee--eeecC
Q psy2137 43 LKQRELFLSRQVETLPATHIRGKCSVTLLNETESLLSYLNKEPRSF--VVSLP 93 (382)
Q Consensus 43 ~~~ReLf~S~~~e~~P~t~iRGkC~v~~~~e~e~l~~yl~keDtFf--LlW~P 93 (382)
...-|||++...+-+=+..|-++|.|....+.+++..=...+-+|| +.|+|
T Consensus 130 ~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~ 182 (232)
T 2fl7_A 130 VNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEP 182 (232)
T ss_dssp SCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCT
T ss_pred cccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcC
Confidence 4667999999999999999999999998888776643255567777 88888
No 69
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=39.33 E-value=19 Score=24.19 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCHHHHHHhcC
Q psy2137 125 FHAMDTLDKHKYSLAEAISSLV 146 (382)
Q Consensus 125 ~~AL~~L~~~~ydv~~AL~~L~ 146 (382)
++|...|..+++|++.|+..|.
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 19 EEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHH
Confidence 4788999999999999998875
No 70
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=38.99 E-value=22 Score=26.79 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q psy2137 159 EEWSASEANLFEEALEKYGKD 179 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKd 179 (382)
-.||++....|.+|+.+.|-+
T Consensus 8 ~~WT~elH~~Fv~Av~~LG~~ 28 (64)
T 1irz_A 8 VLWTHELHNKFLAAVDHLGVE 28 (64)
T ss_dssp CSSCHHHHHHHHHHHHHHCTT
T ss_pred CcCCHHHHHHHHHHHHHhCCC
Confidence 679999999999999999944
No 71
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=38.54 E-value=19 Score=25.63 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCCHHHHHHhcCC
Q psy2137 125 FHAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 125 ~~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
+.|+..|..+++|++.|++.|..
T Consensus 27 ~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 27 EANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 37899999999999999998864
No 72
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=35.10 E-value=14 Score=34.80 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=41.8
Q ss_pred hccccccccccccccccccccCceeeeecccchhhhhccCCCCcee--eeecC
Q psy2137 43 LKQRELFLSRQVETLPATHIRGKCSVTLLNETESLLSYLNKEPRSF--VVSLP 93 (382)
Q Consensus 43 ~~~ReLf~S~~~e~~P~t~iRGkC~v~~~~e~e~l~~yl~keDtFf--LlW~P 93 (382)
...-|||++...+-+=+..|-++|.|....+.+.+..=...+-+|| +.|+|
T Consensus 130 ~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~ 182 (238)
T 1m4z_A 130 ANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEP 182 (238)
T ss_dssp SCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCT
T ss_pred cccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcC
Confidence 4667999999999999999999999998888777644225567777 88988
No 73
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.97 E-value=20 Score=25.14 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCHHHHHHhcC
Q psy2137 125 FHAMDTLDKHKYSLAEAISSLV 146 (382)
Q Consensus 125 ~~AL~~L~~~~ydv~~AL~~L~ 146 (382)
++|...|..+++|++.|++.|.
T Consensus 23 ~~a~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 23 ERVVAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp HHHHHHHHTTTSCSHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHH
Confidence 4788888888888888888775
No 74
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=31.72 E-value=35 Score=23.89 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCHHHHHHhcCC
Q psy2137 125 FHAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 125 ~~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
++|...|-.++.|++.|+....|
T Consensus 22 ~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 22 DEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHHHHcCCcHHHHHHHHcC
Confidence 49999999999999999987643
No 75
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=30.92 E-value=32 Score=23.89 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCCHHHHHHhcC
Q psy2137 126 HAMDTLDKHKYSLAEAISSLV 146 (382)
Q Consensus 126 ~AL~~L~~~~ydv~~AL~~L~ 146 (382)
.++..|..+++|++.|++.|.
T Consensus 24 ~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 24 RNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHH
Confidence 579999999999999999875
No 76
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.86 E-value=34 Score=25.36 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCCHHHHHHhcCC
Q psy2137 125 FHAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 125 ~~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
++|...|..+++|++.|+..|..
T Consensus 24 ~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 24 EASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 47889999999999999998864
No 77
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.57 E-value=31 Score=24.80 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCHHHHHHhcCC
Q psy2137 126 HAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 126 ~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
.++..|..+++|++.|++.|..
T Consensus 26 ~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 26 ANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHh
Confidence 4699999999999999999864
No 78
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=30.23 E-value=32 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHhcCC
Q psy2137 123 TLFHAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 123 ~l~~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
..+.+-++|-.+++|++.|+..|+.
T Consensus 19 ~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 19 SKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp CHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3458999999999999999999864
No 79
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=28.57 E-value=35 Score=25.00 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCHHHHHHhcCC
Q psy2137 126 HAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 126 ~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
.++..|..+++|++.|++.|..
T Consensus 34 ~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 34 RNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHh
Confidence 6799999999999999999863
No 80
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.61 E-value=42 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCCHHHHHHhcCCC
Q psy2137 126 HAMDTLDKHKYSLAEAISSLVPS 148 (382)
Q Consensus 126 ~AL~~L~~~~ydv~~AL~~L~~~ 148 (382)
.++..|..+++|++.|++.|...
T Consensus 46 ~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 46 ANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHhC
Confidence 67999999999999999999754
No 81
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.26 E-value=23 Score=29.40 Aligned_cols=21 Identities=5% Similarity=-0.326 Sum_probs=17.8
Q ss_pred CCCccceecccccCccccCCCC
Q psy2137 253 TSGVVVLEIERSFDDYKFGHAF 274 (382)
Q Consensus 253 ~~~C~~C~t~~S~qWy~~gp~~ 274 (382)
...|.+|.|++.+.|.+ +|.+
T Consensus 5 ~~~C~~Cg~~~Tp~WRr-~~~g 25 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRR-DGTG 25 (115)
T ss_dssp -CCCTTTCCSCCSSCEE-CTTS
T ss_pred CCCCCCCCCccCCcceE-CCCC
Confidence 36799999999999999 6666
No 82
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=26.06 E-value=1.1e+02 Score=26.89 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCchhhhcccCCCcChhhhhhhcccc-ccCchHHH-HHH
Q psy2137 159 EEWSASEANLFEEALEKYG-KDFNDIRNDFLPWKTLKNIIEYYYMW-KTTDRYVQ-QKR 214 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yG-KdF~~I~k~~lp~Ksv~eiVefYY~W-KKt~ry~~-~kr 214 (382)
..||++|=.....|+.+|| ..+..|+.| |.-.+.+-+ +--| .|++.-.+ ++|
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D--~~l~~~~k~--~~~~~~k~p~a~~L~rR 189 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMD--PDLSLTHKI--LPDDPDKKPQAKQLQTR 189 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC--SSSSCTTTS--SCSSTTSSCCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhC--hhcCccccc--cccccccCCChHHHHHH
Confidence 6799999999999999999 889999996 444454433 3333 45555433 344
No 83
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=26.02 E-value=57 Score=26.35 Aligned_cols=44 Identities=16% Similarity=0.445 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhhhcccC----CCcChhhhhhhccc
Q psy2137 159 EEWSASEANLFEEALEKYGKDFNDIRNDFL----PWKTLKNIIEYYYM 202 (382)
Q Consensus 159 ~~WS~eE~~~Fe~al~~yGKdF~~I~k~~l----p~Ksv~eiVefYY~ 202 (382)
+.||.+|....-+-...|+--|..|.--+- +.+|+-++-+-||.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~ 78 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHH
Confidence 689999999999999999999999976332 46888888777764
No 84
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=25.64 E-value=47 Score=24.98 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHhcCC
Q psy2137 123 TLFHAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 123 ~l~~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
.+..|-..|.++++|+++|+..|..
T Consensus 23 g~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 23 SFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3567889999999999999999853
No 85
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.54 E-value=46 Score=25.09 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHhcCC
Q psy2137 124 LFHAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 124 l~~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
-++|...|...+.|++.|+.-|..
T Consensus 33 ~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 33 YECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 358999999999999999988854
No 86
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=22.84 E-value=63 Score=23.48 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.7
Q ss_pred HHHHhcCCCHHHHHHhcCCC
Q psy2137 129 DTLDKHKYSLAEAISSLVPS 148 (382)
Q Consensus 129 ~~L~~~~ydv~~AL~~L~~~ 148 (382)
.+|...+|||.+||..|.+.
T Consensus 31 ~LL~~k~gDI~~aLD~lq~~ 50 (52)
T 1q02_A 31 RLLQTKNYDIGAALDTIQYS 50 (52)
T ss_dssp HHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHccCCHHHHHHHhhhc
Confidence 78889999999999999765
No 87
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.64 E-value=58 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHhcCCC
Q psy2137 124 LFHAMDTLDKHKYSLAEAISSLVPS 148 (382)
Q Consensus 124 l~~AL~~L~~~~ydv~~AL~~L~~~ 148 (382)
.+.+-.+|..+++|++.|+..|...
T Consensus 25 ~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 25 QEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3477888999999999999999753
No 88
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.39 E-value=60 Score=24.63 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCCHHHHHHhcCCC
Q psy2137 126 HAMDTLDKHKYSLAEAISSLVPS 148 (382)
Q Consensus 126 ~AL~~L~~~~ydv~~AL~~L~~~ 148 (382)
..+..|..+++||+.|++.|...
T Consensus 36 an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 36 ANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Confidence 45999999999999999999743
No 89
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=21.91 E-value=50 Score=27.28 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCCHHHHHHhcCC
Q psy2137 125 FHAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 125 ~~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
+.++..|..+++|++.|++.|..
T Consensus 82 ~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 82 ELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHh
Confidence 38999999999999999999964
No 90
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.61 E-value=73 Score=23.28 Aligned_cols=25 Identities=8% Similarity=0.255 Sum_probs=22.1
Q ss_pred chHHHHHHHHHhcCCCHHHHHHhcC
Q psy2137 122 ITLFHAMDTLDKHKYSLAEAISSLV 146 (382)
Q Consensus 122 ~~l~~AL~~L~~~~ydv~~AL~~L~ 146 (382)
.+++.+..+|.+++.|++.|+....
T Consensus 20 mn~~~s~~cL~~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 20 MNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5567999999999999999998864
No 91
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=21.24 E-value=59 Score=21.78 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHhc
Q psy2137 124 LFHAMDTLDKHKYSLAEAISSL 145 (382)
Q Consensus 124 l~~AL~~L~~~~ydv~~AL~~L 145 (382)
...|...|-.++.|++.|+...
T Consensus 20 ~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 20 EDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 4589999999999999999875
No 92
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.05 E-value=57 Score=23.78 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCHHHHHHhcCC
Q psy2137 126 HAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 126 ~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
.-..+|.++++|+..|+..|+.
T Consensus 26 ~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 26 LNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHh
Confidence 6778899999999999999864
No 93
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.38 E-value=52 Score=24.03 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCCHHHHHHhcCC
Q psy2137 125 FHAMDTLDKHKYSLAEAISSLVP 147 (382)
Q Consensus 125 ~~AL~~L~~~~ydv~~AL~~L~~ 147 (382)
++|...|..+++|++.|++.|..
T Consensus 24 ~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 24 DQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Confidence 47888888888888888888853
Done!