RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2137
(382 letters)
>2crg_A Metastasis associated protein MTA3; transcription factor, helix
turn helix, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: a.4.1.3
Length = 70
Score = 100 bits (251), Expect = 7e-27
Identities = 52/65 (80%), Positives = 54/65 (83%)
Query: 155 RDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYVQQKR 214
MEEWSASEA LFEEALEKYGKDFNDIR DFLPWK+L +IIEYYYMWKTTDRYVQQKR
Sbjct: 5 SSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKR 64
Query: 215 VKAVE 219
Sbjct: 65 SGPSS 69
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure
genomics, SANT domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 63
Score = 82.9 bits (205), Expect = 3e-20
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 158 MEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTT 206
+ W+ E F + L +YGK+F IR + LP K +I +YY WK T
Sbjct: 9 EKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKT 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 61
Score = 77.4 bits (191), Expect = 2e-18
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 148 STGPVLCRDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTD 207
S+G R M W+ E +F++ ++ K+F I +L K++ + + YYY+ K +
Sbjct: 2 SSGSSGDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIA-SYLERKSVPDCVLYYYLTKKNE 60
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P;
2.06A {Homo sapiens} PDB: 1xc5_A
Length = 94
Score = 77.2 bits (190), Expect = 6e-18
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 155 RDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRY 209
R M WS E F E ++ K+F I + FL KT+ + YYY+ K + Y
Sbjct: 40 RQVMNMWSEQEKETFREKFMQHPKNFGLIAS-FLERKTVAECVLYYYLTKKNENY 93
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone
inhibitor binding, methylation, nucleosome core,
oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB:
2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Length = 482
Score = 73.8 bits (179), Expect = 1e-14
Identities = 30/143 (20%), Positives = 69/143 (48%), Gaps = 14/143 (9%)
Query: 101 DCSSSVKQPSLHMSAAAASRDITLFHAMDTLDKHKYSLAEAISSLVPSTGPVLCRDEMEE 160
+ + S + +++ A + A+ L HK+++ ++++ +P+ P E
Sbjct: 138 NQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLAD-LPNFTPFPD-----E 191
Query: 161 WSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRY-------VQQK 213
W+ + LFE+A +GK F+ I+ LP K++ +++++YY WK T +++
Sbjct: 192 WTVEDKVLFEQAFSFHGKTFHRIQQ-MLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQ 250
Query: 214 RVKAVEAESKLKQVYIPNYNKPP 236
+ + E+E +L++ N
Sbjct: 251 KREREESEDELEEANGNNPIDIE 273
Score = 60.7 bits (145), Expect = 3e-10
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 295 DPAQKTLLADKGEIRVGSKYQSDITPYLGEASKDPNCRESKDFETLVWTPHHSLTDKQID 354
+ G +RVG +YQ+ + P A +E + LVW+P+ +L++ ++D
Sbjct: 89 SGSSSDEEHGGGGMRVGPQYQAVV-PDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLD 147
Query: 355 QFLVISRSVGKF 366
+++ I++ +
Sbjct: 148 EYIAIAKEKHGY 159
Score = 48.4 bits (113), Expect = 2e-06
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 154 CRDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYVQQK 213
+ W+ E L +A+ KYG+DF I +D + K++ + ++ ++ R+ +
Sbjct: 376 IQKCNARWTTEEQLLAVQAIRKYGRDFQAI-SDVIGNKSVVQVKNFFVNYR--RRFNIDE 432
Query: 214 RVKAVEAESKLKQVYIPNYNKPPQGSAATP 243
++ EAE ++ P+ KP + +
Sbjct: 433 VLQEWEAEHGKEETNGPSNQKPVKSPDNSI 462
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural
genomics consortium, NESG, north structural genomics
consortium; NMR {Homo sapiens}
Length = 89
Score = 60.0 bits (145), Expect = 9e-12
Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 155 RDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTT---DRYVQ 211
+ W+ E ++ L ++G++++ I + KT+ +Y+ +K D +Q
Sbjct: 13 NLYFQGWTEEEMGTAKKGLLEHGRNWSAIA-RMVGSKTVSQCKNFYFNYKKRQNLDEILQ 71
Query: 212 QKRVKAVEAESKLKQ 226
Q ++K + + ++
Sbjct: 72 QHKLKMEKERNARRK 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 3e-07
Identities = 65/294 (22%), Positives = 99/294 (33%), Gaps = 90/294 (30%)
Query: 13 ISSI--NNGTSTTDNGHPGGTSKELTNKQKHQLKQRELFLSRQVETLPATHIRGKCSVTL 70
I I NN + T H GG +K + + RE + + ET+ ++ + +
Sbjct: 1661 ILDIVINNPVNLTI--HFGG--------EKGK-RIRENYSAMIFETIVDGKLKTE---KI 1706
Query: 71 LNE-TESLLSYLNKEPRSFVVSLPST-FARALDCSSSVKQPSLHMSAAAASRDI---TLF 125
E E SY + + L +T F QP+L + AA D+ L
Sbjct: 1707 FKEINEHSTSYTFRSEKGL---LSATQFT----------QPALTLMEKAAFEDLKSKGLI 1753
Query: 126 HAMDTLDKHKYSLAEAISSLVPSTGPVLCRDEMEEWSA--SEANL--FEEALE--KY-GK 178
A T H SL G E++A S A++ E +E Y G
Sbjct: 1754 PADATFAGH---------SL----G---------EYAALASLADVMSIESLVEVVFYRGM 1791
Query: 179 DFNDIRNDFLPWKTLKNIIEYYYM--------WKTTDRYVQQKRVKAVEAESKLKQVYIP 230
+P L Y M + + Q V+ V + V I
Sbjct: 1792 ----TMQVAVPRDELGR--SNYGMIAINPGRVAASFSQEALQYVVERVGKRTG-WLVEIV 1844
Query: 231 NYNKPPQ-----G-----SAATPGVVNNNKLSTSGVVVLEIERSFDDYKFGHAF 274
NYN Q G T V+N KL ++ L+ S ++ + GH F
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVT-NVLNFIKLQKIDIIELQKSLSLEEVE-GHLF 1896
Score = 47.4 bits (112), Expect = 7e-06
Identities = 50/309 (16%), Positives = 92/309 (29%), Gaps = 114/309 (36%)
Query: 116 AAASRDITL----------------FHAMDTLDKHKYSLAEAISSLV----PSTGPVL-- 153
A ++R +TL F A ++ L E P+T L
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 154 -----CRDEMEEWSASEANLFEEALEKYGKDF-------NDI--------RNDFLPWKTL 193
+E S+ F++ L +F NDI + +
Sbjct: 63 KFLGYVSSLVEP---SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 194 KNIIEYYYMWKTTDRYVQQKRVKAVEAESKLKQVYIPNYNKPPQGSAATPGVVNNNKLST 253
K +I+ Y + KR ++ S L + A G
Sbjct: 120 KELIKNYI-----TARIMAKRPFDKKSNSALFR-------------AVGEG--------N 153
Query: 254 SGVVVLEIERSF------DDYKFGHAFSTRLAMPRDEL----DTFFYCL--VFDPAQKTL 301
+ +V + F DDY F +EL T+ + + + +TL
Sbjct: 154 AQLVAI-----FGGQGNTDDY-F------------EELRDLYQTYHVLVGDLIKFSAETL 195
Query: 302 --LADKGEIRVGSKYQS--DITPYLGEASKDPNCRESKDF--ETLVWTPHHSLTDKQIDQ 355
L + + + +I +L S P KD+ + P + Q+
Sbjct: 196 SELI-RTTLDAEKVFTQGLNILEWLENPSNTP----DKDYLLSIPISCPLIGVI--QLAH 248
Query: 356 FLVISRSVG 364
++V ++ +G
Sbjct: 249 YVVTAKLLG 257
Score = 39.6 bits (92), Expect = 0.002
Identities = 52/294 (17%), Positives = 97/294 (32%), Gaps = 109/294 (37%)
Query: 14 SSINNGTSTTDNGHPG------GTSKELTNKQKHQLKQRELFLSRQVETLPAT-HIRGKC 66
S+ N G P ++E Q+ + ++++ LPA +
Sbjct: 326 DSLENN-----EGVPSPMLSISNLTQE-------QV---QDYVNKTNSHLPAGKQV---- 366
Query: 67 SVTLLNETESLLSYLNKEPRSFVVSLP-------STFARALDCSSSVKQPSLHMSAAAAS 119
++L+N ++ VVS P + R S + Q + S
Sbjct: 367 EISLVNG-----------AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS----E 411
Query: 120 R---------DITL-FHAMDTLDKHKYSLAEAISSLVPSTGPVLCRDEME---EWSASEA 166
R + FH S L+ ++ +D ++ ++A +
Sbjct: 412 RKLKFSNRFLPVASPFH----------------SHLLVPASDLINKDLVKNNVSFNAKD- 454
Query: 167 NLFEEALEKYG-KDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYVQQKRVKAV--EAESK 223
+ + Y D +D+R L I ++R V V E ++
Sbjct: 455 -I---QIPVYDTFDGSDLR-------VLSGSI--------SERIVDCIIRLPVKWETTTQ 495
Query: 224 LKQVYIPNYNKPPQGSAATPGVVNNNKLSTSGV-VV----LEIERSFDDYKFGH 272
K +I ++ P G++ + + NK T GV V+ L+I DDY F
Sbjct: 496 FKATHILDFG--PGGASGLGVLTHRNKDGT-GVRVIVAGTLDINPD-DDYGFKQ 545
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription
regulator complex, oxidoreductase/repressor complex,
histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens}
SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B*
2x0l_B*
Length = 235
Score = 48.2 bits (113), Expect = 1e-06
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 151 PVLCRDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYV 210
P + + W+ E L +A+ KYG+DF I +D + K++ + ++ ++ R+
Sbjct: 126 PEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAI-SDVIGNKSVVQVKNFFVNYR--RRFN 182
Query: 211 QQKRVKAVEAESKLKQVYIPNYNKPPQGSAATP 243
+ ++ EAE ++ P+ KP + +
Sbjct: 183 IDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSI 215
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology
domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC,
nuclear protein; 1.55A {Gallus gallus}
Length = 174
Score = 39.1 bits (91), Expect = 6e-04
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 34 ELTNKQKHQLKQRELFLSRQVETLPATHIRGKCSVTLLNETESLLSYLNKEPRSFVV 90
E + + ++E+F S +P + I GKC V + E L ++ +V
Sbjct: 72 ETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVC 128
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; SWI/SNF complex 155 kDa subunit,
BRG1-associated factor 155; NMR {Homo sapiens}
Length = 79
Score = 37.2 bits (86), Expect = 7e-04
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 155 RDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYY 200
EW+ E L EALE Y D+N + + + +T I ++
Sbjct: 15 ASAGREWTEQETLLLLEALEMYKDDWNKVS-EHVGSRTQDECILHF 59
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics,
NPPSFA; NMR {Schizosaccharomyces pombe}
Length = 58
Score = 35.1 bits (81), Expect = 0.002
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 147 PSTGPVLCRDEMEEWSASEANLFEEALEKYGK-DFNDIRNDFLPWKTLKNIIEYYY 201
S + W A E L +A E G ++ DI + +T + ++Y
Sbjct: 2 SSGSSGFDEN----WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYL 53
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding,
regulation of transcription, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Length = 72
Score = 35.2 bits (81), Expect = 0.003
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 161 WSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYY 200
W+ E LFE+ L K+G+ + I + + +T+ + Y
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKI-SKLIGSRTVLQVKSYA 50
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription
FA DNA-binding, nuclear protein, floral asymmetry; 1.9A
{Antirrhinum majus} SCOP: a.4.1.3
Length = 93
Score = 35.2 bits (81), Expect = 0.005
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 17/89 (19%)
Query: 155 RDEMEEWSASEANLFEEALEKYGKDFND----IRNDFLPWKTLKNIIEYYYMWKTTDRYV 210
R WSA E FE AL Y KD D + + +T + + ++Y +
Sbjct: 5 RGSGRPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILV------ 57
Query: 211 QQKRVKAVEAESKLKQVYIPNYNKPPQGS 239
+ +K +E+ +V PNY
Sbjct: 58 --EDIKYIESG----KVPFPNYRTTGGNM 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.022
Identities = 55/311 (17%), Positives = 89/311 (28%), Gaps = 117/311 (37%)
Query: 1 ALELDSSDESSEISSIN------------NGTSTTDN-GHPGGTSKELTNKQKHQLKQ-- 45
L+ D E+ + N +G +T DN H +LT + L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLE 367
Query: 46 ----RELFLSRQVETLPA-THIRGKCSVTLL---------NETESLL------SYLNKEP 85
R++F V P HI LL ++ ++ S + K+P
Sbjct: 368 PAEYRKMFDRLSV--FPPSAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 86 RSFVVSLPS-----------------------TFARALDCSSSVKQP---------SLHM 113
+ +S+PS + D + H+
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 114 SAAAASRDITLFHAMDTLD----KHKYSLAEAISSLVPSTGPVLCRDEMEEWSASEANLF 169
+TLF + LD + K + S S N
Sbjct: 482 KNIEHPERMTLFRMV-FLDFRFLEQK----------IRHDSTAWNA------SGSILNTL 524
Query: 170 EEALEKYGKDFNDIRN----------DFLPWKTLKNIIEYYYMWKTTDRYVQ---QKRVK 216
++ L+ Y D DFLP K +N+I K TD ++ +
Sbjct: 525 QQ-LKFYKPYICDNDPKYERLVNAILDFLP-KIEENLICS----KYTD-LLRIALMAEDE 577
Query: 217 AVEAESKLKQV 227
A+ E KQV
Sbjct: 578 AI-FEEAHKQV 587
Score = 34.1 bits (77), Expect = 0.090
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 32/97 (32%)
Query: 304 DKGEIRVGSKYQSDITPYLGEA-SKDPNCRESKDFETLVWTPHHSLTDKQIDQFL----- 357
+ GE + K DI +A + +C++ +D + L+ ++ID +
Sbjct: 10 ETGEHQYQYK---DILSVFEDAFVDNFDCKDVQDMPKSI------LSKEEIDHIIMSKDA 60
Query: 358 -----------------VISRSVGKFQESDREFIVES 377
++ + V + + +F++
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor
protein2, transcriptional activation, MYB domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 60
Score = 32.3 bits (74), Expect = 0.023
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 159 EEWSASEANLFEEALEKYG-KDFNDIRNDFLPWKTLKNIIEYYY 201
W+A E EA+ G ++ D+ N + KT + ++Y
Sbjct: 9 PSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYM 51
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.033
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 13/38 (34%)
Query: 211 QQKRVKAVEAESKLKQVYIPNYNKPPQGSAATPGV-VN 247
+++ +K ++ + LK +Y + SA P + +
Sbjct: 18 EKQALKKLQ--ASLK-LYADD-------SA--PALAIK 43
Score = 28.0 bits (61), Expect = 3.0
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 39 QKHQLKQRE----LFLSRQVETLPATHIRGKCSV 68
+K LK+ + L+ ++ PA I K ++
Sbjct: 18 EKQALKKLQASLKLYAD---DSAPALAI--KATM 46
Score = 28.0 bits (61), Expect = 3.6
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 135 KYSLAEAISSL---VPSTGPVLC-RDEME 159
K +L + +SL + P L + ME
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 26.8 bits (58), Expect = 7.3
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 304 DKGEIRVGSKYQSDITPYLGEASKDP 329
+K ++ K Q+ + Y +++ P
Sbjct: 18 EKQALK---KLQASLKLYADDSA--P 38
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 33.6 bits (76), Expect = 0.097
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 160 EWSASEANLFEEALEKYGK-DFNDIRNDFLPWKTLKNIIEYYYM-WKTTDRYVQQKRVKA 217
W+ E F KYG+ I + P KTL+ + Y W +R ++
Sbjct: 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLK 184
Query: 218 V--EAESKLKQV 227
+ E K+K+V
Sbjct: 185 IIENEEEKIKRV 196
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 33.3 bits (75), Expect = 0.13
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 46 RELFLSRQVETLPATHIRGKCSVTLLNETESLLSYLNKEPRSFVVSLPST 95
ELFL + E + ++I K V +E+ +P S +
Sbjct: 214 LELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGK 263
Score = 33.3 bits (75), Expect = 0.17
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 46 RELFLSRQVETLPATHIRGKCSVTLLNE-TESLLSYLNKEPRSF 88
L+ S + + ++G+C+V + E + Y P F
Sbjct: 442 NLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRF 485
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin,
fusion of virus membrane with membrane, membrane fusion,
sialic acid, virion; HET: NAG BMA; 2.70A {Artificial
gene}
Length = 74
Score = 30.2 bits (68), Expect = 0.21
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 155 RDEMEEWSASEANLFEEALEKYGKDFNDIRND----FLPWKTLKNIIEYY 200
R W SE FE AL KD D R ++ +T + + ++Y
Sbjct: 17 RGSGRPWKFSENIAFEIALSFTNKDTPD-RWKKVAQYVKGRTPEEVKKHY 65
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.3
Length = 73
Score = 29.8 bits (67), Expect = 0.28
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 143 SSLVPSTGPVLCRDEMEEWSASEANLFEEALEKYGKDFND----IRNDFLPWKTLKNIIE 198
S S R E W+ ++ L E AL++Y + +D I +P K+ ++ I
Sbjct: 3 SGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIA 61
Query: 199 YY 200
Y
Sbjct: 62 RY 63
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 31.8 bits (71), Expect = 0.40
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 46 RELFLSRQVETLPATHIRGKCSVTLL-NETESLLSYLNKEPRSF 88
L+ S + + + ++G+C+V + ES+ Y P F
Sbjct: 753 NMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRF 796
Score = 29.5 bits (65), Expect = 2.1
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 46 RELFLSRQVETLPATHIRGKCSVTLLNETESLLSYLNKEPRS 87
ELFL + E + ++I K V +E+ +P +
Sbjct: 525 LELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPET 566
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3;
transcription, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 75
Score = 28.8 bits (64), Expect = 0.56
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 161 WSASEANLFEEALEKYGKDFNDIRN-----DFLPWKTLKNIIEYY 200
W+ E E+ L KY + + R D L +T K +
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQV 55
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system,
HD-motif, structural genomics, PSI-2; 2.30A
{Methanocaldococcus jannaschii} PDB: 3s4l_A
Length = 244
Score = 28.0 bits (61), Expect = 4.7
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 1/81 (1%)
Query: 119 SRDITLFHAMDTLDKHKYSLAEAISSLVPSTGPVLCRDEMEEWSASEANLFEEALEKY-G 177
+++ A+ + H+ + I +L + + FE+ ++K G
Sbjct: 109 DKNLAFIGALTVMLHHEPIIMGQIRNLKKKELTAEVVLDKLKKFDGMIEDFEDLIKKLIG 168
Query: 178 KDFNDIRNDFLPWKTLKNIIE 198
DI + + +
Sbjct: 169 YSIGDIIKNDSNKDDIIRFVI 189
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase,
SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A
{Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13
a.187.1.1 PDB: 2nog_A
Length = 304
Score = 27.7 bits (61), Expect = 6.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYY 200
W+ + N F +A EKYG+D D + KT + +IEY
Sbjct: 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 9.0
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 15/67 (22%)
Query: 155 RDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYVQQKR 214
D + E E+A +K +++N +++ + KN K +R +
Sbjct: 101 LDAASK--VMEQEWREKA-KKDLEEWNQRQSE----QVEKN--------KINNRIADKAF 145
Query: 215 VKAVEAE 221
+ +A+
Sbjct: 146 YQQPDAD 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.369
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,578,764
Number of extensions: 321333
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 40
Length of query: 382
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 287
Effective length of database: 4,049,298
Effective search space: 1162148526
Effective search space used: 1162148526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.4 bits)