RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2137
(382 letters)
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 57
Score = 84.1 bits (208), Expect = 2e-21
Identities = 52/57 (91%), Positives = 54/57 (94%)
Query: 158 MEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYVQQKR 214
MEEWSASEA LFEEALEKYGKDFNDIR DFLPWK+L +IIEYYYMWKTTDRYVQQKR
Sbjct: 1 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKR 57
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 58.7 bits (142), Expect = 4e-12
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 155 RDEMEEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRY 209
R M WS E F E ++ K+F I + FL KT+ + YYY+ K + Y
Sbjct: 14 RQVMNMWSEQEKETFREKFMQHPKNFGLIAS-FLERKTVAECVLYYYLTKKNENY 67
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 217
Score = 54.9 bits (132), Expect = 2e-09
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 32 SKELTNKQKHQLKQRELFLSRQVETLPATHIRGKCSVTLLNETESLLSYLNKEPRSFVVS 91
+ EL+L+ ++ L + +V ++ E L ++ E R F V
Sbjct: 119 LNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPE-RDFTVR 177
Query: 92 L 92
Sbjct: 178 Y 178
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 48.3 bits (115), Expect = 2e-08
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 161 WSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYVQQKRVKAVEA 220
W+ E L +A+ KYG+DF I + + K++ + ++ ++ R+ + ++ EA
Sbjct: 8 WTTEEQLLAVQAIRKYGRDFQAISD-VIGNKSVVQVKNFFVNYR--RRFNIDEVLQEWEA 64
Query: 221 E 221
E
Sbjct: 65 E 65
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum
majus) [TaxId: 4151]}
Length = 63
Score = 32.2 bits (73), Expect = 0.010
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 161 WSASEANLFEEALEKYGKDFNDIRND---FLPWKTLKNIIEYYYM 202
WSA E FE AL Y KD D + + +T + + ++Y +
Sbjct: 4 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI 48
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 30.1 bits (68), Expect = 0.051
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 160 EWSASEANLFEEALEKYGKDFND 182
EW+ + + ++ K+
Sbjct: 3 EWTEEDLSQLTRSMVKFPGGTPG 25
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L,
isoform b {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 29.1 bits (65), Expect = 0.090
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 159 EEWSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYY 201
W+A E EA+ G + + KT + ++Y
Sbjct: 2 PSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 52
Score = 29.3 bits (66), Expect = 0.092
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 161 WSASEANLFEEALEKYGK-DFNDIRNDFLPWKTLKNIIEYY 200
W+ + N F +A EKYG+ D ++I D KT + +IEY
Sbjct: 2 WTKRDFNQFIKANEKYGRDDIDNIAKDV-EGKTPEEVIEYN 41
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 64
Score = 26.4 bits (58), Expect = 1.1
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 13/67 (19%)
Query: 161 WSASEANLFEEALEKYGKDFNDIRNDFLPWKTLKNIIEYYYMWKTTDRYVQQKRVKAVEA 220
W+ N F A++ G + K I++ + +
Sbjct: 10 WTHELHNKFLAAVDHLGVE----------RAVPKKILDLM---NVDKLTRENVASHLQKF 56
Query: 221 ESKLKQV 227
LK+V
Sbjct: 57 RVALKKV 63
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 26.3 bits (58), Expect = 8.3
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 163 ASEANLFEEALEKYGKDFNDIRNDFLPWKTLKN 195
A + E+ +E YGK I D + LK+
Sbjct: 17 ARGLGIQEDEVELYGKYKAKISLDVY--RRLKD 47
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 26.1 bits (57), Expect = 8.8
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 30/156 (19%)
Query: 49 FLSRQVETLPAT------HIRGKCSVTLLNETESLLSYLNKEPRSFVVSLPSTFARALDC 102
FL ++++++ + K V N+ E F+ + +T AR+L
Sbjct: 7 FLPQEIKSIDTMIPLLSRALWNKHQVKKFNKAEDF-------QDRFIDHVETTLARSLYN 59
Query: 103 SSSVKQPSLHMSAAAASRDITLFHAMDTLDKHK--------YSLAE-----AISSLVPST 149
+ +A+ + RD + T K Y E A+ + + +
Sbjct: 60 CD---DMVAYEAASMSIRDNLVIDWNKTQQKFTTRDPKRVYYLSLEFLMGRALDNALINM 116
Query: 150 GPVLCRDEMEEWSASEANLFEEALEKYGKDFNDIRN 185
+ ++ + + AL++ G D+ +
Sbjct: 117 K-IEDPEDPAASKGKPREMIKGALDELGFKLEDVLD 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.369
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,346,930
Number of extensions: 61438
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 12
Length of query: 382
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,213,086
Effective search space: 357860370
Effective search space used: 357860370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.8 bits)