Query psy2138
Match_columns 208
No_of_seqs 80 out of 82
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 17:00:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3554|consensus 100.0 1.6E-62 3.4E-67 460.6 5.5 166 4-206 352-526 (693)
2 smart00401 ZnF_GATA zinc finge 98.9 1.1E-09 2.4E-14 75.8 3.2 46 37-82 3-49 (52)
3 PF00320 GATA: GATA zinc finge 98.5 2.5E-08 5.4E-13 64.3 0.8 34 40-73 1-35 (36)
4 cd00202 ZnF_GATA Zinc finger D 98.5 8E-08 1.7E-12 67.2 2.2 42 39-81 1-43 (54)
5 PHA00733 hypothetical protein 51.9 6.4 0.00014 31.7 0.7 29 115-145 99-127 (128)
6 PHA00616 hypothetical protein 51.6 4.6 9.9E-05 27.5 -0.1 22 122-143 6-27 (44)
7 PF13894 zf-C2H2_4: C2H2-type 50.9 3.1 6.7E-05 22.4 -0.9 22 117-140 2-23 (24)
8 TIGR02443 conserved hypothetic 47.5 10 0.00022 27.4 1.1 30 35-64 7-37 (59)
9 KOG3554|consensus 44.2 16 0.00034 36.5 2.2 45 154-198 559-604 (693)
10 PF09526 DUF2387: Probable met 36.2 20 0.00043 26.5 1.2 30 35-64 6-36 (71)
11 COG5347 GTPase-activating prot 27.7 31 0.00068 32.1 1.3 28 37-65 20-47 (319)
12 KOG3576|consensus 26.9 21 0.00045 32.3 -0.1 32 111-144 169-200 (267)
13 PF00096 zf-C2H2: Zinc finger, 25.5 11 0.00024 20.7 -1.3 17 122-138 5-21 (23)
14 PF04022 Staphylcoagulse: Stap 23.1 39 0.00084 20.9 0.7 11 9-19 2-12 (27)
15 PRK09723 putative fimbrial-lik 22.6 41 0.0009 32.7 1.1 30 45-75 159-196 (421)
16 KOG3623|consensus 21.9 40 0.00087 35.5 0.9 24 112-137 919-942 (1007)
17 TIGR03826 YvyF flagellar opero 21.5 54 0.0012 27.1 1.4 27 34-68 78-104 (137)
18 PF05766 NinG: Bacteriophage L 21.0 48 0.0011 28.8 1.1 18 36-53 86-103 (189)
19 PRK08351 DNA-directed RNA poly 20.8 49 0.0011 24.0 0.9 17 37-53 15-32 (61)
No 1
>KOG3554|consensus
Probab=100.00 E-value=1.6e-62 Score=460.64 Aligned_cols=166 Identities=37% Similarity=0.671 Sum_probs=144.5
Q ss_pred ceeecCCCCCCCCCCccC---CCCcccCCCCCCCCCCCCCCCccccCcccceecCCC---cccccccchhhhccCCCCCC
Q psy2138 4 AEVDMAEYNPHDLFFHDV---GPGMVNGANGDVLISNKPCESCNVTVSTNWFPWYSG---TKICINCHAFWRKYGGLKIP 77 (208)
Q Consensus 4 kQVYIP~YnKPNPn~I~~---~~g~~NG~~g~~~~~g~~CEsC~t~~S~QWYsWGP~---cRLC~sCW~YWKKYGGLK~p 77 (208)
||||||+|||||||||++ ++| |||++.. .+.|++||||||+||.|||+|||+ ||||++||+|||||||||||
T Consensus 352 kqvYIP~ynKPnpnqI~~~n~k~g-~~gtt~~-~~~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKygGLk~p 429 (693)
T KOG3554|consen 352 KQVYIPTYNKPNPNQISPYNTKPG-MNGTTFQ-NQDGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYGGLKMP 429 (693)
T ss_pred heeeccCCCCCCcceecccCCCcC-ccccccc-CCCCCcccccccccccceeccCCCCccchhhHHHHHHHHHhcCcCCc
Confidence 899999999999999987 555 7886422 245999999999999999999999 99999999999999999999
Q ss_pred ccCCCCCCCccCCCCCCCCCCCcccccCCCCCCCCCCCCccCCCCCchhhhhhhhhcccccccCCcccC-CCC--CCCcc
Q psy2138 78 GKLSDGELDYLKPNKKSGSSSLSEEDRIGPSGLVGHRPHRCSVPGCSKEFKLKAHLHRHLATGHGLVAR-PGS--PRPIM 154 (208)
Q Consensus 78 ~~~e~~~~~~~~~~~~s~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~ke~~~r~hl~R~~~~~~g~~~r-~g~--p~~~~ 154 (208)
|++|+++... +..++ +...+.|++|. +.||++++ +|+ |+..+
T Consensus 430 tqle~~~~~~--------------------~p~~e-------------~p~~r~~~Sr~--~p~s~~a~~t~a~~~k~~~ 474 (693)
T KOG3554|consen 430 TQLEGEDKGP--------------------PPPVE-------------PPAPRSHASRG--TPQSLPARATGAVNPKTAQ 474 (693)
T ss_pred chhccccCCC--------------------CCCCC-------------CCCCCccccCC--CcccCCcccccccCcccHH
Confidence 9999887431 00111 22347889987 78888888 666 89999
Q ss_pred cccceEEEecChhhHHHHHhhhcccChhhhhcCCCcccCHHHHHhhhhhhcc
Q psy2138 155 KTRNAFYLRATPLTRISRRLCRHVIQPRHAARSPFWCINIAAVKTDCEYIES 206 (208)
Q Consensus 155 KTR~AF~L~Tt~~tRlARrlck~~~~~R~aARrPf~~IN~~aIk~ec~~r~~ 206 (208)
||||+|+|+||.|||||||+|+++||+|++|||||.+||.++||+||++|++
T Consensus 475 k~rQ~f~l~tt~lt~lar~~crnlL~~~~Aarrp~~~in~~aikae~a~r~~ 526 (693)
T KOG3554|consen 475 KTRQAFALHTTKLTRLARRDCRNLLRPREAARRPYTPINFAAIKAECAQRLP 526 (693)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhCccchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998864
No 2
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=98.89 E-value=1.1e-09 Score=75.85 Aligned_cols=46 Identities=33% Similarity=0.711 Sum_probs=40.9
Q ss_pred CCCCCCccccCcccceecCCC-cccccccchhhhccCCCCCCccCCC
Q psy2138 37 NKPCESCNVTVSTNWFPWYSG-TKICINCHAFWRKYGGLKIPGKLSD 82 (208)
Q Consensus 37 g~~CEsC~t~~S~QWYsWGP~-cRLC~sCW~YWKKYGGLK~p~~~e~ 82 (208)
++.|++|+++++++|..+... ..||..|++||+|+|.++.|..++.
T Consensus 3 ~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~~ 49 (52)
T smart00401 3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKK 49 (52)
T ss_pred CCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCCCCcccccc
Confidence 688999999999999884444 6999999999999999999988864
No 3
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=98.53 E-value=2.5e-08 Score=64.29 Aligned_cols=34 Identities=29% Similarity=0.846 Sum_probs=25.7
Q ss_pred CCCccccCcccceecCCC-cccccccchhhhccCC
Q psy2138 40 CESCNVTVSTNWFPWYSG-TKICINCHAFWRKYGG 73 (208)
Q Consensus 40 CEsC~t~~S~QWYsWGP~-cRLC~sCW~YWKKYGG 73 (208)
|++|.+++|++|...... ..||..|++||||||.
T Consensus 1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~ 35 (36)
T PF00320_consen 1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK 35 (36)
T ss_dssp -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence 899999999999996545 4499999999999984
No 4
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=98.47 E-value=8e-08 Score=67.19 Aligned_cols=42 Identities=29% Similarity=0.698 Sum_probs=34.5
Q ss_pred CCCCccccCcccceecCCC-cccccccchhhhccCCCCCCccCC
Q psy2138 39 PCESCNVTVSTNWFPWYSG-TKICINCHAFWRKYGGLKIPGKLS 81 (208)
Q Consensus 39 ~CEsC~t~~S~QWYsWGP~-cRLC~sCW~YWKKYGGLK~p~~~e 81 (208)
.|++|++++++||..+... ..||..|++||+||| ...|..+.
T Consensus 1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~-~~rp~~~~ 43 (54)
T cd00202 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG-VMRPLSKR 43 (54)
T ss_pred CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC-CCCCcccC
Confidence 4999999999999995424 899999999999998 44455544
No 5
>PHA00733 hypothetical protein
Probab=51.93 E-value=6.4 Score=31.66 Aligned_cols=29 Identities=28% Similarity=0.603 Sum_probs=20.3
Q ss_pred CCccCCCCCchhhhhhhhhcccccccCCccc
Q psy2138 115 PHRCSVPGCSKEFKLKAHLHRHLATGHGLVA 145 (208)
Q Consensus 115 ~~~~~i~~~~ke~~~r~hl~R~~~~~~g~~~ 145 (208)
++.|.+ |++.|....+|.+|..+.|++.|
T Consensus 99 ~~~C~~--CgK~F~~~~sL~~H~~~~h~~~~ 127 (128)
T PHA00733 99 SKVCPV--CGKEFRNTDSTLDHVCKKHNICV 127 (128)
T ss_pred CccCCC--CCCccCCHHHHHHHHHHhcCccc
Confidence 355654 77777777777777777777654
No 6
>PHA00616 hypothetical protein
Probab=51.60 E-value=4.6 Score=27.53 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred CCchhhhhhhhhcccccccCCc
Q psy2138 122 GCSKEFKLKAHLHRHLATGHGL 143 (208)
Q Consensus 122 ~~~ke~~~r~hl~R~~~~~~g~ 143 (208)
-||+.|.-+++|.+|..+.||.
T Consensus 6 ~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 6 RCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred hhhHHHhhHHHHHHHHHHhcCC
Confidence 4999999999999999888884
No 7
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=50.89 E-value=3.1 Score=22.43 Aligned_cols=22 Identities=36% Similarity=0.901 Sum_probs=15.3
Q ss_pred ccCCCCCchhhhhhhhhccccccc
Q psy2138 117 RCSVPGCSKEFKLKAHLHRHLATG 140 (208)
Q Consensus 117 ~~~i~~~~ke~~~r~hl~R~~~~~ 140 (208)
.|.+ |++.|..+..|.+|..+.
T Consensus 2 ~C~~--C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 2 QCPI--CGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp E-SS--TS-EESSHHHHHHHHHHH
T ss_pred CCcC--CCCcCCcHHHHHHHHHhh
Confidence 4555 999999988888886543
No 8
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=47.51 E-value=10 Score=27.44 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=25.3
Q ss_pred CCCCCCCCccccCcccceecCCC-ccccccc
Q psy2138 35 ISNKPCESCNVTVSTNWFPWYSG-TKICINC 64 (208)
Q Consensus 35 ~~g~~CEsC~t~~S~QWYsWGP~-cRLC~sC 64 (208)
.-|-.|-.|.++++..||.=... .+.|..|
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~C 37 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVEC 37 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccC
Confidence 34677999999999999986666 8888888
No 9
>KOG3554|consensus
Probab=44.17 E-value=16 Score=36.54 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=37.8
Q ss_pred ccccceEEEecChhhHHHHHhh-hcccChhhhhcCCCcccCHHHHH
Q psy2138 154 MKTRNAFYLRATPLTRISRRLC-RHVIQPRHAARSPFWCINIAAVK 198 (208)
Q Consensus 154 ~KTR~AF~L~Tt~~tRlARrlc-k~~~~~R~aARrPf~~IN~~aIk 198 (208)
..+|.+..|.|+.+.|++|++- .+.+.+++.+++|...||...|.
T Consensus 559 ~~~k~~~~~lt~i~rr~~~~in~~s~~il~Krsy~~~~g~d~~~~l 604 (693)
T KOG3554|consen 559 PATKSTISFLTPICRRALRRINPGSAFILGKRSYEPHNGIDDEKIL 604 (693)
T ss_pred CCCCccceeeccchHhhhcccCCCcchhhhhhccccccCCcchhhh
Confidence 4556666666999999999988 88999999999999999966554
No 10
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=36.25 E-value=20 Score=26.52 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCCCCCCCccccCcccceecCCC-ccccccc
Q psy2138 35 ISNKPCESCNVTVSTNWFPWYSG-TKICINC 64 (208)
Q Consensus 35 ~~g~~CEsC~t~~S~QWYsWGP~-cRLC~sC 64 (208)
.-|-.|-.|.++++..||.=... .+-|..|
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~C 36 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVEC 36 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCC
Confidence 34677999999999999875556 8999988
No 11
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=27.66 E-value=31 Score=32.14 Aligned_cols=28 Identities=32% Similarity=0.828 Sum_probs=24.5
Q ss_pred CCCCCCccccCcccceecCCCcccccccc
Q psy2138 37 NKPCESCNVTVSTNWFPWYSGTKICINCH 65 (208)
Q Consensus 37 g~~CEsC~t~~S~QWYsWGP~cRLC~sCW 65 (208)
.+-|--|.+.. .||-+|.=.+-||..|=
T Consensus 20 Nk~CaDCga~~-P~W~S~nlGvfiCi~Ca 47 (319)
T COG5347 20 NKKCADCGAPN-PTWASVNLGVFLCIDCA 47 (319)
T ss_pred cCccccCCCCC-CceEecccCeEEEeecc
Confidence 47799999999 99999998888888883
No 12
>KOG3576|consensus
Probab=26.92 E-value=21 Score=32.29 Aligned_cols=32 Identities=41% Similarity=0.831 Sum_probs=26.9
Q ss_pred CCCCCCccCCCCCchhhhhhhhhcccccccCCcc
Q psy2138 111 VGHRPHRCSVPGCSKEFKLKAHLHRHLATGHGLV 144 (208)
Q Consensus 111 ~~~~~~~~~i~~~~ke~~~r~hl~R~~~~~~g~~ 144 (208)
++-||.+|++ |.|.|.-|-.|.-|+...||++
T Consensus 169 tgvrpykc~~--c~kaftqrcsleshl~kvhgv~ 200 (267)
T KOG3576|consen 169 TGVRPYKCSL--CEKAFTQRCSLESHLKKVHGVQ 200 (267)
T ss_pred cCccccchhh--hhHHHHhhccHHHHHHHHcCch
Confidence 3448999998 9999999988888888889874
No 13
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=25.48 E-value=11 Score=20.70 Aligned_cols=17 Identities=41% Similarity=0.761 Sum_probs=14.2
Q ss_pred CCchhhhhhhhhccccc
Q psy2138 122 GCSKEFKLKAHLHRHLA 138 (208)
Q Consensus 122 ~~~ke~~~r~hl~R~~~ 138 (208)
.|++.|..+..|.+|..
T Consensus 5 ~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 5 ICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp TTTEEESSHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHh
Confidence 59999999998988854
No 14
>PF04022 Staphylcoagulse: Staphylocoagulase repeat; InterPro: IPR001443 Staphylocoagulase is an extracellular protein produced by several strains of Staphylococcus aureus and which specifically forms a complex with prothrombin [, ]. This complex named staphylothrombin can clot fibrinogen without any proteolytic cleavage of prothrombin. The C terminus of staphylocoagulase contains the tandem repeat which does not seem to be required for the procoagulant activity.
Probab=23.13 E-value=39 Score=20.85 Aligned_cols=11 Identities=18% Similarity=0.054 Sum_probs=8.3
Q ss_pred CCCCCCCCCCc
Q psy2138 9 AEYNPHDLFFH 19 (208)
Q Consensus 9 P~YnKPNPn~I 19 (208)
|+||||.--..
T Consensus 2 p~~nkps~tna 12 (27)
T PF04022_consen 2 PTYNKPSETNA 12 (27)
T ss_pred CcccCcccccc
Confidence 89999976544
No 15
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=22.60 E-value=41 Score=32.67 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=20.8
Q ss_pred ccCcccceecCCC--------cccccccchhhhccCCCC
Q psy2138 45 VTVSTNWFPWYSG--------TKICINCHAFWRKYGGLK 75 (208)
Q Consensus 45 t~~S~QWYsWGP~--------cRLC~sCW~YWKKYGGLK 75 (208)
..++.||+.|-.+ |+.|.+=|-||- +||+=
T Consensus 159 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~y~~-~gg~~ 196 (421)
T PRK09723 159 GDSSEQYFNWSNPSEDTLYWSCNNANSTNKYWA-VGGIV 196 (421)
T ss_pred cCCcceeEeccCCcHHHhhhhhhccccchhhee-cccEE
Confidence 3455699999988 555555577884 67653
No 16
>KOG3623|consensus
Probab=21.89 E-value=40 Score=35.47 Aligned_cols=24 Identities=50% Similarity=0.995 Sum_probs=21.3
Q ss_pred CCCCCccCCCCCchhhhhhhhhcccc
Q psy2138 112 GHRPHRCSVPGCSKEFKLKAHLHRHL 137 (208)
Q Consensus 112 ~~~~~~~~i~~~~ke~~~r~hl~R~~ 137 (208)
+.|||.|.| |-|.||-|.||-.|-
T Consensus 919 GqRPyqC~i--CkKAFKHKHHLtEHk 942 (1007)
T KOG3623|consen 919 GQRPYQCII--CKKAFKHKHHLTEHK 942 (1007)
T ss_pred CCCCcccch--hhHhhhhhhhhhhhh
Confidence 348999998 999999999999884
No 17
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=21.54 E-value=54 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.610 Sum_probs=20.3
Q ss_pred CCCCCCCCCccccCcccceecCCCcccccccchhh
Q psy2138 34 LISNKPCESCNVTVSTNWFPWYSGTKICINCHAFW 68 (208)
Q Consensus 34 ~~~g~~CEsC~t~~S~QWYsWGP~cRLC~sCW~YW 68 (208)
.+.+.+||+|+++--. -|+|.+|-..=
T Consensus 78 ~nl~~~CE~CG~~I~~--------Gr~C~~C~~~l 104 (137)
T TIGR03826 78 PNLGYPCERCGTSIRE--------GRLCDSCAGEL 104 (137)
T ss_pred CCCcCcccccCCcCCC--------CCccHHHHHHH
Confidence 4568999999987433 38899997654
No 18
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=20.97 E-value=48 Score=28.83 Aligned_cols=18 Identities=33% Similarity=0.765 Sum_probs=14.3
Q ss_pred CCCCCCCccccCccccee
Q psy2138 36 SNKPCESCNVTVSTNWFP 53 (208)
Q Consensus 36 ~g~~CEsC~t~~S~QWYs 53 (208)
.|.+|.||++..+.||-+
T Consensus 86 ~~~~CiSCG~~~~~~~da 103 (189)
T PF05766_consen 86 AGKPCISCGRKHGGQWDA 103 (189)
T ss_pred cCCCcccCCCcCCCCccc
Confidence 478999999977777754
No 19
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=20.77 E-value=49 Score=23.98 Aligned_cols=17 Identities=29% Similarity=0.821 Sum_probs=13.9
Q ss_pred CCCCCCccccC-ccccee
Q psy2138 37 NKPCESCNVTV-STNWFP 53 (208)
Q Consensus 37 g~~CEsC~t~~-S~QWYs 53 (208)
+..|+.|++.+ +.+|+-
T Consensus 15 ~~~CP~Cgs~~~T~~W~G 32 (61)
T PRK08351 15 EDRCPVCGSRDLSDEWFD 32 (61)
T ss_pred CCcCCCCcCCcccccccc
Confidence 34699999998 889974
Done!