RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2138
(208 letters)
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 37.8 bits (88), Expect = 2e-04
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 95 GSSSLSEEDRIGPSGLVGHRPHRCSVPGCSKEFK----LKAHLHRH 136
GSS S R H CS PGC K + LKAH H
Sbjct: 1 GSSGSSGPQIDSS----RIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
Score = 30.8 bits (70), Expect = 0.049
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 112 GHRPHRCSVPGCSKEF----KLKAHLHRH 136
G +P CS GC + F +L H H
Sbjct: 44 GEKPFSCSWKGCERRFARSDELSRHRRTH 72
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 36.6 bits (85), Expect = 2e-04
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 114 RPHRCSVPGCSKEFK----LKAHLHRH 136
+ H C + GC K + L+AHL H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 36.5 bits (85), Expect = 0.001
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 114 RPHRCSVPGCSKEFK----LKAHLHRHLATG 140
R H C PGC+K + LKAHL H TG
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTH--TG 42
Score = 31.8 bits (73), Expect = 0.044
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
G +P++C+ GC F L RH
Sbjct: 42 GEKPYKCTWEGCDWRFARSDELTRHYRK 69
Score = 26.8 bits (60), Expect = 2.5
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
G +P +C V C++ F HL H+
Sbjct: 72 GAKPFQCGV--CNRSFSRSDHLALHMKR 97
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 33.7 bits (78), Expect = 0.005
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHGL 143
+ + C C KEF K ++ H+ H +
Sbjct: 37 NVKVYPCPF--CFKEFTRKDNMTAHVKIIHKI 66
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGH 141
G +RC V CS+ + ++ RH T H
Sbjct: 7 GEHTYRCKV--CSRVYTHISNFCRHYVTSH 34
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 32.7 bits (75), Expect = 0.007
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
G +P C+ PGC F L RH +
Sbjct: 9 GEKPFACTWPGCGWRFSRSDELSRHRRS 36
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 32.9 bits (76), Expect = 0.010
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGH 141
G C PGC + F + +L+ H H
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 32.9 bits (76), Expect = 0.012
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
+ C P C K F K HL H
Sbjct: 35 HQKSFSCPEPACGKSFNFKKHLKEH 59
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 33.6 bits (78), Expect = 0.013
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
RP C+ PGC+K + +HL H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMH 27
Score = 31.3 bits (72), Expect = 0.068
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P C P C K+F L RH
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRH 115
Score = 31.0 bits (71), Expect = 0.10
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P++C C + F L RH
Sbjct: 33 GEKPYQCDFKDCERRFSRSDQLKRH 57
Score = 25.9 bits (58), Expect = 5.8
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P +C C ++F HL H
Sbjct: 63 GVKPFQCKT--CQRKFSRSDHLKTH 85
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.4 bits (70), Expect = 0.017
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 106 GPSGLVGHRPHRCSVPGCSKEFKLKAHLHRHLATGHGLVARPGSP 150
G SG G +P+ C V C FK K + H+ + G V + G
Sbjct: 1 GSSGSSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKSGPS 43
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 32.5 bits (75), Expect = 0.029
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
R C GC+K F+ + + +HL T HG
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT-HG 31
Score = 30.9 bits (71), Expect = 0.12
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P +C+ GC K F L +L H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTH 83
Score = 29.8 bits (68), Expect = 0.31
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G RP+ C GC+K+F +L H
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 25.6 bits (57), Expect = 7.9
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G R H C+ C K F + L RH
Sbjct: 31 GPRVHVCA--ECGKAFVESSKLKRH 53
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 33.0 bits (76), Expect = 0.031
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
+P+ C +PGC+K + + L +H+ T HG
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 33.0 bits (76), Expect = 0.031
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +PH+C+ GC K + +L H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTH 88
Score = 29.9 bits (68), Expect = 0.38
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGH 141
G +P+ C GCSK F + +H H
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 27.6 bits (62), Expect = 2.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHLATGH 141
R GCS+EF + L H+ + H
Sbjct: 2 TDCRWD--GCSQEFDSQEQLVHHINSEH 27
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 33.0 bits (76), Expect = 0.031
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHL 137
G +P C PGC K F +L H
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 29.2 bits (66), Expect = 0.57
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P +C GC + F + +H
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 27.3 bits (61), Expect = 2.3
Identities = 5/31 (16%), Positives = 7/31 (22%), Gaps = 2/31 (6%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
C + F L H+ H
Sbjct: 22 AQLSRPKK--SCDRTFSTMHELVTHVTMEHV 50
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 31.8 bits (73), Expect = 0.034
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
P+ C GC K F L + L RH
Sbjct: 28 QQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 28.0 bits (63), Expect = 0.68
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 116 HRCSVPGCSKEFKLKAHLHRHLAT 139
+ C C K FK L H +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFS 25
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 30.3 bits (69), Expect = 0.035
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHLAT 139
RP C+ C K F L RH T
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 31.1 bits (71), Expect = 0.040
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
RP+ C V C + F L RH+
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRI 43
Score = 26.9 bits (60), Expect = 1.3
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
G +P +C C + F HL H+ T
Sbjct: 46 GQKPFQC--RICMRNFSRSDHLTTHIRT 71
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 31.3 bits (72), Expect = 0.053
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHLAT 139
H C GC K + +HL HL T
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRT 29
Score = 31.0 bits (71), Expect = 0.055
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P+ C GC +F L RH
Sbjct: 32 GEKPYHCDWDGCGWKFARSDELTRH 56
Score = 26.0 bits (58), Expect = 4.2
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
GHRP +C C + F HL H+
Sbjct: 62 GHRPFQCQK--CDRAFSRSDHLALHMKR 87
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 30.5 bits (69), Expect = 0.090
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
C C K F+ + H + H
Sbjct: 35 AALRFPCEF--CGKRFEKPDSVAAHRSKSHP 63
Score = 30.1 bits (68), Expect = 0.10
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +C + C + KA L+ H
Sbjct: 4 GSSGLQCEI--CGFTCRQKASLNWH 26
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type
zinc finger, KIAA0530, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 73
Score = 29.6 bits (65), Expect = 0.17
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 94 SGSSSLSEEDRIGPSGLVGHRPHRCSVPGCSKEFKLKAHLHRHLATGH 141
SG + P+ +RP+RC GC F ++ +L H H
Sbjct: 6 SGRKKPVSQSLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVH 53
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.7 bits (64), Expect = 0.17
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 118 CSVPGCSKEFKLKAHLHRHLAT 139
C PGC+K FK + ++ H+ T
Sbjct: 21 CLFPGCTKTFKRRYNIRSHIQT 42
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 29.4 bits (67), Expect = 0.19
Identities = 7/30 (23%), Positives = 8/30 (26%), Gaps = 2/30 (6%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGH 141
C C K+ L HL H
Sbjct: 42 NVAKFHCPH--CDTVIARKSDLGVHLRKQH 69
Score = 29.0 bits (66), Expect = 0.26
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHGLVARP 147
G +P+ C + C F + H+ H
Sbjct: 12 GEKPYECYI--CHARFTQSGTMKMHILQKHTENVAK 45
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 28.0 bits (62), Expect = 0.25
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
RP+ C PGC K F L RH
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRH 24
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.27
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
+ H+C C + F LK+HL++H
Sbjct: 9 STKSHQCHE--CGRGFTLKSHLNQH 31
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 30.3 bits (69), Expect = 0.31
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P C GC K F HL RH
Sbjct: 39 GEKPFPCKEEGCEKGFTSLHHLTRH 63
Score = 29.9 bits (68), Expect = 0.37
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
++ + CS C + L H
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAH 33
Score = 29.9 bits (68), Expect = 0.40
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
G + C GC F KA++ +H H
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99
Score = 29.1 bits (66), Expect = 0.68
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
P+ C GC K F L + L RH
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 26.0 bits (58), Expect = 7.9
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
+ C C K FK L H
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVH 125
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 27.7 bits (61), Expect = 0.31
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
+P C+ PGC + F + HL H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVH 27
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 29.0 bits (66), Expect = 0.34
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
RP+ C V C + F L RH
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH 25
Score = 27.0 bits (61), Expect = 1.5
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P +C + C + F HL H
Sbjct: 31 GQKPFQCRI--CMRNFSRSDHLTTH 53
Score = 25.5 bits (57), Expect = 6.2
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P C + C ++F RH
Sbjct: 59 GEKPFACDI--CGRKFARSDERKRH 81
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 27.3 bits (61), Expect = 0.38
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHL 137
R C V C++ F + HL RH
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHY 22
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 30.4 bits (67), Expect = 0.38
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 116 HRCSVPGCSKEFKLKAHLHRHLATGHG 142
+ C GC+K F +++HL H
Sbjct: 305 YGCGAKGCTKLFHAAEFVYKHLKLKHT 331
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 27.9 bits (63), Expect = 0.42
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGH 141
+P+ C C K F HL+ H+ H
Sbjct: 9 VGKPYICQS--CGKGFSRPDHLNGHIKQVH 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 27.5 bits (62), Expect = 0.45
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P++C C F AHL H
Sbjct: 8 GEKPYKCET--CGARFVQVAHLRAH 30
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 27.2 bits (61), Expect = 0.52
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 106 GPSGLVGHRPHRCSVPGCSKEFKLKAHLHRH 136
G SG G R + C C K F+ K L H
Sbjct: 1 GSSGSSGQRVYECQ--ECGKSFRQKGSLTLH 29
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 26.8 bits (59), Expect = 0.86
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 107 PSGLVGHRPHRCSVPGCSKEFKLKAHLHRH 136
S + C + C K F+ HL+RH
Sbjct: 4 GSSGRTRKQVACEI--CGKIFRDVYHLNRH 31
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 28.2 bits (64), Expect = 0.88
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 108 SGLVGH-------RPHRCSVPGCSKEFKLKAHLHRHLATG 140
LVGH +P+ C++ C+K F + HRH+ +
Sbjct: 51 HHLVGHMKIHTGIKPYECNI--CAKRFMWRDSFHRHVTSC 88
Score = 25.1 bits (56), Expect = 9.8
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 94 SGSSSLSEEDRIGPSGLVGHRPHRCSVPGCSKEFKLKAHLHRH 136
+ S + +G RP+ C V C K+FK+K HL H
Sbjct: 20 THKSQRDRHMSMH----LGLRPYGCGV--CGKKFKMKHHLVGH 56
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.7 bits (60), Expect = 0.89
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 106 GPSGLVGHRPHRCSVPGCSKEFKLKAHLHRH 136
G SG G +P CS C K F K++L H
Sbjct: 1 GSSGSSGEKPFGCSC--CEKAFSSKSYLLVH 29
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.91
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P+ C+V C K F L AHL++H
Sbjct: 9 GEKPYSCNV--CGKAFVLSAHLNQH 31
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
RP +C+ CS + K ++L +H+ HG
Sbjct: 34 TDRPFKCNY--CSFDTKQPSNLSKHMKKFHG 62
Score = 24.4 bits (54), Expect = 8.4
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
P +CS CS KA L H
Sbjct: 6 SGHPEKCSE--CSYSCSSKAALRIHERI 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 26.3 bits (59), Expect = 1.1
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHL 137
G +P+ C + C F+ L HL
Sbjct: 8 GEKPYPCEI--CGTRFRHLQTLKSHL 31
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 26.7 bits (60), Expect = 1.2
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
R C V C++ F + HL RH
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRH 21
Score = 24.4 bits (54), Expect = 8.2
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
+P+ C + C++ F + L RH
Sbjct: 27 NEKPYPCGL--CNRAFTRRDLLIRH 49
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.0 bits (64), Expect = 1.2
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 91 NKKSGSSSLSEEDRIGPSGLVGHRPHRCSVPGCSKEFKLKAHLHRHLATGHGLVA 145
N ++ +S+ + + +V + C+V C+ F + L HL + H A
Sbjct: 92 NATKPAAVVSDPQSMKVTPIVNPSSYVCNV--CNARFSTMSALSEHLRSDHRDDA 144
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.9 bits (56), Expect = 1.3
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
RP+ CSV C K F LK + H
Sbjct: 2 RPYSCSV--CGKRFSLKHQMETH 22
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.5
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P+ C C K F HL++H
Sbjct: 9 GKKPYECKE--CRKTFIQIGHLNQH 31
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 25.8 bits (57), Expect = 1.5
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHGLV 144
G +P +C C + F HL H H LV
Sbjct: 8 GIKPFQCPD--CDRSFSRSDHLALHRKR-HMLV 37
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.9
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P +C + C K F ++ L+RH
Sbjct: 9 GEKPFKCDI--CGKSFCGRSRLNRH 31
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 25.1 bits (54), Expect = 2.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 119 SVPGCSKEFKLKAHLHRHLATGHGLVA 145
+ P C K F L +H+ T +VA
Sbjct: 4 ACPACPKRFMRSDALSKHIKTAFIVVA 30
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 25.8 bits (56), Expect = 2.6
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
RP+ C+ C+ FK K +L +H+ +
Sbjct: 26 DVRPYHCTY--CNFSFKTKGNLTKHMKSKAH 54
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 2.8
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G RP +C+ C K F ++HL H
Sbjct: 9 GERPFKCNE--CGKGFGRRSHLAGH 31
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 26.3 bits (59), Expect = 2.8
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
+P +C + C + F HL H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTH 22
Score = 25.1 bits (56), Expect = 6.5
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P C + C ++F RH
Sbjct: 28 GEKPFACDI--CGRKFARSDERKRH 50
Score = 25.1 bits (56), Expect = 8.0
Identities = 5/45 (11%), Positives = 7/45 (15%), Gaps = 11/45 (24%)
Query: 94 SGSSSLSEEDRIGPSGLVGH--RPHRCSVPGCSKEFKLKAHLHRH 136
+ S I P + HL
Sbjct: 42 ARSDERKRHRDI-------QHILPILEDK--VEELLSKNYHLENE 77
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 3.0
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G RP+ C+V C K F +++L +H
Sbjct: 9 GERPYICTV--CGKAFTDRSNLIKH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (56), Expect = 3.4
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G R HRCS C K F ++ +H
Sbjct: 9 GERGHRCSD--CGKFFLQASNFIQH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 3.4
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P+ C+ C K F K+HL+RH
Sbjct: 9 GEKPYICNE--CGKSFIQKSHLNRH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G RP+ C+ C K F +HL H
Sbjct: 9 GERPYGCNE--CGKNFGRHSHLIEH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 3.8
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G + ++C V C KEF +HL H
Sbjct: 9 GEKCYKCDV--CGKEFSQSSHLQTH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 4.2
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G P++CS C K F K L H
Sbjct: 9 GVNPYKCSQ--CEKSFSGKLRLLVH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 4.3
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P+ CS C K F K+ LH H
Sbjct: 9 GEKPYECS--DCGKSFIKKSQLHVH 31
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR
{Caenorhabditis elegans}
Length = 71
Score = 25.2 bits (55), Expect = 4.6
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 36 SNKPCESCNVTVSTNWFPWYSGTKI-CINCHAFWRKYGGLKIPGKLSDGELDYLKPNKKS 94
+ C +C+VT + W S I C C + RKY + ++ + LK + +
Sbjct: 7 KSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKRKLKVQETN 66
Query: 95 GSSSL 99
G S
Sbjct: 67 GVDSF 71
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 24.8 bits (54), Expect = 4.7
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G P +CS C + F + +L +H
Sbjct: 9 GENPFKCS--KCDRVFTQRNYLVQH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 4.7
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P++CS C K F L +H
Sbjct: 9 GEKPYQCSE--CGKSFSGSYRLTQH 31
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.5 bits (54), Expect = 5.0
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
+ + C+ C K F HL RH
Sbjct: 9 DSKSYNCN--ECGKAFTRIFHLTRH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 5.0
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P +C C K F +HLH H
Sbjct: 9 GEKPFQCEE--CGKRFTQNSHLHSH 31
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3;
arfgap domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 149
Score = 26.5 bits (58), Expect = 5.0
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 37 NKPCESCNVTVSTNWFPWYSGTKICINCHAFWRKYG 72
NK C C + +W G +CI+C R G
Sbjct: 29 NKVCFDCG-AKNPSWASITYGVFLCIDCSGSHRSLG 63
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 27.1 bits (60), Expect = 5.1
Identities = 14/63 (22%), Positives = 17/63 (26%), Gaps = 7/63 (11%)
Query: 29 ANGDVLISNKPCESCNVTVSTNWFPWYSGTKICINCHAFWRKYGG-LK-IPGKLSDGELD 86
NGD + T W S +GG L I K L
Sbjct: 144 YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQK-----LG 198
Query: 87 YLK 89
Y+K
Sbjct: 199 YIK 201
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 5.1
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
+P++C C K + + +L H
Sbjct: 9 VEKPYKCED--CGKGYNRRLNLDMH 31
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 25.7 bits (56), Expect = 5.7
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 111 VGHRPHRCSVPGCSKEFKLKAHLHRHLATGH 141
+ C + F L H+ H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.0
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P++CS C K F K+ L H
Sbjct: 9 GEKPYKCSD--CGKSFTWKSRLRIH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G RPH+C+ C K F AHL +H
Sbjct: 9 GERPHKCN--ECGKSFIQSAHLIQH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.2
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P +C+ C K F K+ L H
Sbjct: 9 GEKPCKCTE--CGKAFCWKSQLIMH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 6.3
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P++C C K +K + L H
Sbjct: 9 GEKPYKCVE--CGKGYKRRLDLDFH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.5 bits (54), Expect = 6.3
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G + H C C K F + L H
Sbjct: 9 GEKSHTCDE--CGKNFCYISALRIH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.1 bits (53), Expect = 6.7
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
G +P +C C F L +HL +
Sbjct: 9 GEKPFQCKE--CGMNFSWSCSLFKHLRS 34
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 25.1 bits (56), Expect = 7.1
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
PH+C V C K F K L H
Sbjct: 5 SSGPHKCEV--CGKCFSRKDKLKTH 27
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 7.3
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P +C C K F + LH H
Sbjct: 9 GEKPFKCEE--CGKRFTQNSQLHSH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 24.0 bits (53), Expect = 7.3
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G P+ CS C K F K L H
Sbjct: 7 GENPYECS--ECGKAFNRKDQLISH 29
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 24.7 bits (55), Expect = 7.6
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 96 SSSLSEEDRIGPSGLVGHRPHRCSVPGCSKEFKLKAHLHRH 136
+ +P++C C F+ K +L H
Sbjct: 2 GHHHHHHSHMT----HSDKPYKCDR--CQASFRYKGNLASH 36
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 7.7
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G P CS C K F K +L H
Sbjct: 9 GENPFICSE--CGKVFTHKTNLIIH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 7.8
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G R + CS C K F K+ L H
Sbjct: 9 GERHYECS--ECGKAFARKSTLIMH 31
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural
genomics, structural genomics consortium, SGC, metal
binding protein; 1.80A {Homo sapiens}
Length = 144
Score = 25.7 bits (56), Expect = 7.8
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 37 NKPCESCNVTVSTNWFPWYSGTKICINCHAFWRKYG 72
NK C C + +W G +CI+C R G
Sbjct: 37 NKACFDCG-AKNPSWASITYGVFLCIDCSGVHRSLG 71
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3;
activator, DNA-binding, metal-binding, nucleus; HET:
DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A*
1gat_A* 1gau_A*
Length = 63
Score = 24.6 bits (53), Expect = 7.8
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 36 SNKPCESCNVTVSTNWFPWYSGTKICINCHAFWRKYG 72
+ C +C T +T W +G +C C +++ +
Sbjct: 6 AGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42
>3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 144
Score = 25.8 bits (56), Expect = 7.8
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 18/53 (33%)
Query: 60 ICINCHAFW------------------RKYGGLKIPGKLSDGELDYLKPNKKS 94
+ H F+ +++ GL ++ + + + P KKS
Sbjct: 84 VWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIMEIPVLKGEIIMPTKKS 136
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 7.9
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P+ C V CSK F KAHL +H
Sbjct: 9 GEKPYECKV--CSKAFTQKAHLAQH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 7.9
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P++C V C K F++ +HL +H
Sbjct: 9 GEKPYKCQV--CGKAFRVSSHLVQH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 8.0
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P +C C K + + HL +H
Sbjct: 9 GEKPFKCGE--CGKSYNQRVHLTQH 31
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 24.7 bits (55), Expect = 8.1
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 94 SGSSSLSEEDRIGPSGLVGHRPHRCSVPGCSKEFKLKAHLHRH 136
S SS L + R+ G +P++C C K F + L H
Sbjct: 25 SRSSILVQHQRVH----TGEKPYKCLE--CGKAFSQNSGLINH 61
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 24.0 bits (53), Expect = 8.6
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P C+ C K F + + L H
Sbjct: 9 GEKPFECAE--CGKSFSISSQLATH 31
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 25.5 bits (55), Expect = 8.9
Identities = 15/79 (18%), Positives = 21/79 (26%), Gaps = 4/79 (5%)
Query: 61 CINCHAFWRKYGGLKIPGKLSDGELDYLKPNKKSGSSSLSEEDRIGPSGLVGHRPHRCSV 120
C C A G + + SS + D V P C
Sbjct: 54 CSFCLASILSSGPQNCA---ACVHEGIYEEGISILESSSAFPDNAARR-EVESLPAVCPS 109
Query: 121 PGCSKEFKLKAHLHRHLAT 139
GC+ + LK + H
Sbjct: 110 DGCTWKGTLKEYESCHEGR 128
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.0 bits (53), Expect = 9.0
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G P+ C C K F K L H
Sbjct: 9 GENPYECCE--CGKVFSRKDQLVSH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 9.2
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P++C C K + K +L H
Sbjct: 9 GEKPYKCEK--CGKGYNSKFNLDMH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 9.2
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P +C C K F+ HL H
Sbjct: 9 GEKPFKCKE--CGKAFRQNIHLASH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRH 136
G +P++C C K F+ +HL RH
Sbjct: 9 GEKPYKCHE--CGKVFRRNSHLARH 31
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 23.8 bits (52), Expect = 9.5
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 106 GPSGLVGHRPHRCSVPGCSKEFKLKAHLHRH 136
G SG G +P+ C+ C + F L +H
Sbjct: 1 GSSGSSGEKPYSCAE--CKETFSDNNRLVQH 29
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 23.7 bits (50), Expect = 9.9
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 106 GPSGLVGHRPHRCSVPGCSKEFKLKAHLHRHLATGHGLVARPGS 149
G SG GH R C F L+ HL +H T H + P S
Sbjct: 1 GSSGSSGHTRKRYECSKCQATFNLRKHLIQHQKT-HAAKSGPSS 43
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia,
homologous recomination, polymorphism, phosphoprotein,
beta-propeller, WD40, nucleus; 1.90A {Homo sapiens}
PDB: 3eu7_A
Length = 356
Score = 25.9 bits (56), Expect = 10.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 39 PCESCNVTVSTNWFPWYSGTKICI 62
P SC+V VS ++ + CI
Sbjct: 34 PSGSCSVDVSAMFWERAGCKEPCI 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.455
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,365,808
Number of extensions: 191263
Number of successful extensions: 678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 672
Number of HSP's successfully gapped: 202
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)