RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2138
(208 letters)
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 34.2 bits (79), Expect = 5e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHLAT 139
RP+ C GC+K+F +L H+ T
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT 26
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 34.2 bits (79), Expect = 6e-04
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHLAT 139
RP+ C PGC K F L RH +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 33.8 bits (78), Expect = 7e-04
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
+PH+C+ GC K + +L H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTH 23
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 33.4 bits (77), Expect = 0.001
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
RP C+ C K F L RH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRH 23
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 33.1 bits (76), Expect = 0.001
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
RP+ C V C + F A L RH
Sbjct: 1 RPYACPVESCDRRFSRSADLTRH 23
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 32.7 bits (75), Expect = 0.002
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHLAT 139
+P +C+ GC K F L +L H+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRI 26
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.2 bits (66), Expect = 0.030
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
G +P+ C + C F + H+ H
Sbjct: 5 GEKPYECYI--CHARFTQSGTMKMHILQKHT 33
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 28.7 bits (64), Expect = 0.058
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 114 RPHRCSVPGCSKEFKLKAHL--HRH 136
+P C+ PGC + F + HL H+H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKH 29
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.1 bits (63), Expect = 0.079
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
G +P+ CS C K F+ K L H H
Sbjct: 5 GEKPYACSH--CDKTFRQKQLLDMHFKRYHD 33
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 27.9 bits (62), Expect = 0.095
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
+P+ C +PGC+K + + L +H+ T HG
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 29
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 27.2 bits (61), Expect = 0.14
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
G +P+ C C K F + L +H
Sbjct: 4 GEKPYGCVE--CGKAFSRSSILVQHQRV 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 27.2 bits (61), Expect = 0.16
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
R C V C++ F + HL RH
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRH 21
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.4 bits (61), Expect = 0.17
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 116 HRCSVPGCSKEFKLKAHLHRH 136
C P C K F K HL H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEH 22
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 27.3 bits (61), Expect = 0.17
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHLATGH 141
+P+ C C K F HL+ H+ H
Sbjct: 4 KPYICQS--CGKGFSRPDHLNGHIKQVH 29
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 26.1 bits (57), Expect = 0.35
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 118 CSVPGCS----KEFKLKAHLHRH 136
CS C K +KL+AHL +H
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSKH 28
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 26.2 bits (57), Expect = 0.36
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHLATGHG 142
+P C GC K F HL RH T G
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG 29
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.6 bits (57), Expect = 0.56
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
+P +C + C + F HL H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTH 22
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 25.8 bits (56), Expect = 0.97
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 107 PSGLVGHRPHRCSVPGCSKEFKLKAHLHRHLATGH 141
P+ +RP+RC GC F ++ +L H H
Sbjct: 12 PTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVH 46
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 24.9 bits (54), Expect = 0.97
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 114 RPHRCSVPGCSKEF 127
+P+ C GCSK F
Sbjct: 1 KPYMCEHEGCSKAF 14
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 25.3 bits (55), Expect = 1.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
+ C PGC+K FK + ++ H+ T
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQT 42
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 24.3 bits (53), Expect = 1.9
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
G +P +C C + F HL H
Sbjct: 8 GIKPFQCPD--CDRSFSRSDHLALHRKR 33
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 24.3 bits (53), Expect = 1.9
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
G RP C + C F KA+ RHL
Sbjct: 4 GKRPFVCRI--CLSAFTTKANCARHLKV 29
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 23.7 bits (52), Expect = 2.2
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
+P++C C K F + L H
Sbjct: 1 KPYKCLE--CGKAFSQNSGLINH 21
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (52), Expect = 2.3
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRH 136
+ C C K F HL +H
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKH 21
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 23.9 bits (51), Expect = 2.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 113 HRPHRCSVPGCSKEFKLKAHLHRH 136
P+ C GC K F L + L RH
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRH 24
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor
GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 39
Score = 23.5 bits (51), Expect = 4.3
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 40 CESCNVTVSTNWFPWYSGTKICINCHAFWRKYG 72
C +C T + W +G +C C + + G
Sbjct: 5 CVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 37
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 23.6 bits (50), Expect = 4.7
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 112 GHRPHRCSVPGCSKEFKLKAHLHRHLAT 139
G +P+ C+ C+K F + HRH+ +
Sbjct: 2 GIKPYECN--ICAKRFMWRDSFHRHVTS 27
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus
(Endothia parasitica) [TaxId: 5116]}
Length = 330
Score = 25.3 bits (54), Expect = 5.8
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 32 DVLISNKPCESCNVTVSTNWFPWYSGTKICINCHAFWRKYG 72
D+ + + + V T + P S T ++ + YG
Sbjct: 40 DLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYG 80
>g1wht.1 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat
(Triticum vulgare) [TaxId: 4565]}
Length = 409
Score = 25.5 bits (55), Expect = 5.9
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 44 NVTVSTNWFPWYSGTKICINCHAFWRKYGGL 74
+ +T+W+PWY ++ + + Y GL
Sbjct: 347 GLPTTTSWYPWYDDQEV----GGWSQVYKGL 373
>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 96
Score = 24.0 bits (51), Expect = 6.9
Identities = 10/62 (16%), Positives = 17/62 (27%)
Query: 42 SCNVTVSTNWFPWYSGTKICINCHAFWRKYGGLKIPGKLSDGELDYLKPNKKSGSSSLSE 101
+C+ S N WY H + + LD K + ++
Sbjct: 14 NCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRA 73
Query: 102 ED 103
D
Sbjct: 74 AD 75
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 23.1 bits (49), Expect = 7.0
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 114 RPHRCSVPGCSKEFKLKAHLHRHL 137
+ + C C K F K+ RH+
Sbjct: 2 KLYPCQ---CGKSFTHKSQRDRHM 22
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.6 bits (48), Expect = 7.0
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 118 CSVPGCSKEFKLKAHLHRHLATGHG 142
C GC+K F+ + + +HL T HG
Sbjct: 4 CPHKGCTKMFRDNSAMRKHLHT-HG 27
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.3 bits (47), Expect = 7.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 118 CSVPGCSKEFKLKAHLHRHLATGH 141
C PGC + F + +L+ H H
Sbjct: 3 CDFPGCGRIFSNRQYLNHHKKYQH 26
>d2d8ra1 g.39.1.16 (A:8-93) THAP domain-containing protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 23.9 bits (51), Expect = 8.0
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 115 PHRCSVPGCSKEFKLKAHLHRH 136
P C+ GC+ + ++ H
Sbjct: 2 PTNCAAAGCATTYNKHINISFH 23
>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation
protein HypE {Thermococcus kodakaraensis [TaxId:
311400]}
Length = 113
Score = 24.2 bits (52), Expect = 8.6
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 6 VDMAEYNPHDLFFHDVGPGMVNGANGDVLISNKPCESCNVTVSTNWFPW 54
+D P D+G V+G D+ + + ++
Sbjct: 16 IDGHTVKPLFFPGGDIGRLAVSGTVNDLAVMGAEPIALANSMIIGEGLD 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.455
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 844,070
Number of extensions: 38831
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 41
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)