BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2141
(173 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328696967|ref|XP_001951881.2| PREDICTED: poly(U)-binding-splicing factor half pint-like
[Acyrthosiphon pisum]
Length = 603
Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 140/154 (90%), Gaps = 4/154 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQSVIDEI EEAK YNRIYVASIHPDLTE+DIKSVFEAFGPI+ CKL QGS
Sbjct: 215 VGRPSNMPQAQSVIDEIQEEAKQYNRIYVASIHPDLTEDDIKSVFEAFGPIRTCKLAQGS 274
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+P+RH+GYGFIEYE +QA+ EAISSMNLFDLGGQYLRVGRAITPPNALH GP+ S+SH
Sbjct: 275 TPNRHRGYGFIEYEGRQAAIEAISSMNLFDLGGQYLRVGRAITPPNALH---GPS-SSSH 330
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLS 162
MPTAAAVAAAAATAKIQAMD ATNAV LSKLS
Sbjct: 331 MPTAAAVAAAAATAKIQAMDAVATNAVLGLSKLS 364
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ IK F FG IK + +HKG+ F+EYE +A+ A
Sbjct: 139 LMCRVYVGSISFELKEDSIKQAFSPFGCIKSINMSWDPITQKHKGFAFVEYEIPEAAQLA 198
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN LGG+ ++ VGR P A
Sbjct: 199 LEQMNGVMLGGRNIKVVGRPSNMPQA 224
>gi|307195017|gb|EFN77085.1| Poly(U)-binding-splicing factor half pint [Harpegnathos saltator]
Length = 561
Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTEEDIKSVFEAFGPI YCKL QGS
Sbjct: 164 VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEEDIKSVFEAFGPITYCKLAQGS 223
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
SPHRHKGYGFIEYET QA+ EAI+SMNLFDLGGQYLRVGRAITPPNAL GP TS
Sbjct: 224 SPHRHKGYGFIEYETMQAALEAIASMNLFDLGGQYLRVGRAITPPNALM---GPPSGTSM 280
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKL 161
MPTAAAVAAAAATAKIQAMD A+NAV + L+KL
Sbjct: 281 MPTAAAVAAAAATAKIQAMDAVASNAVALGLTKL 314
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 88 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLA 147
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN +GG+ ++ VGR P A
Sbjct: 148 LEQMNGVMIGGRNIKVVGRPSNMPQA 173
>gi|322785180|gb|EFZ11893.1| hypothetical protein SINV_08068 [Solenopsis invicta]
Length = 545
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/154 (83%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DIKSVFEAFGPI YCKL QGS
Sbjct: 147 VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGS 206
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
SPHRHKGYGFIEYET QA+ EAI+SMNLFDLGGQYLRVGRAITPPNAL GP TS
Sbjct: 207 SPHRHKGYGFIEYETMQAALEAIASMNLFDLGGQYLRVGRAITPPNALM---GPPSGTSM 263
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKL 161
MPTAAAVAAAAATAKIQAMD A+NAV + L+KL
Sbjct: 264 MPTAAAVAAAAATAKIQAMDAVASNAVALGLTKL 297
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 71 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLA 130
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN +GG+ ++ VGR P A
Sbjct: 131 LEQMNGVMIGGRNIKVVGRPSNMPQA 156
>gi|270001539|gb|EEZ97986.1| hypothetical protein TcasGA2_TC000381 [Tribolium castaneum]
Length = 591
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/156 (82%), Positives = 137/156 (87%), Gaps = 4/156 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQ+VIDEI EEAK YNRIYVASIHPDLTE+DIKSVFEAFGPI YCKL QGS
Sbjct: 215 VGRPSNMPQAQAVIDEIQEEAKQYNRIYVASIHPDLTEDDIKSVFEAFGPIIYCKLAQGS 274
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
S H+HKGYGFIEYET QA+NEAI+SMNLFDLGGQYLRVGRAITPPNAL GP+ +S
Sbjct: 275 SGHKHKGYGFIEYETAQAANEAIASMNLFDLGGQYLRVGRAITPPNALL---GPSSGSSV 331
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKLSQ 163
MPTAAAVAAAAATAKIQAMD A+NA + SKLSQ
Sbjct: 332 MPTAAAVAAAAATAKIQAMDAVASNAAALGFSKLSQ 367
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 139 LMCRVYVGSISFELKEDTIRQSFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLA 198
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN +GG+ ++ VGR P A
Sbjct: 199 LEQMNGVMIGGRNIKVVGRPSNMPQA 224
>gi|380016392|ref|XP_003692169.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Apis
florea]
Length = 592
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/154 (83%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DIKSVFEAFGPI YCKL QGS
Sbjct: 194 VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGS 253
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
SPHRHKGYGFIEYET QA+ EAI+SMNLFDLGGQYLRVGRAITPPNAL GP TS
Sbjct: 254 SPHRHKGYGFIEYETMQAALEAIASMNLFDLGGQYLRVGRAITPPNALM---GPPSGTSM 310
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKL 161
MPTAAAVAAAAATAKIQAMD A+NAV + L+KL
Sbjct: 311 MPTAAAVAAAAATAKIQAMDAVASNAVALGLTKL 344
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 118 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLA 177
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN +GG+ ++ VGR P A
Sbjct: 178 LEQMNGVMIGGRNIKVVGRPSNMPQA 203
>gi|332022211|gb|EGI62526.1| Poly(U)-binding-splicing factor half pint [Acromyrmex echinatior]
Length = 609
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/154 (83%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DIKSVFEAFGPI YCKL QGS
Sbjct: 210 VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGS 269
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
SPHRHKGYGFIEYET QA+ EAI+SMNLFDLGGQYLRVGRAITPPNAL GP TS
Sbjct: 270 SPHRHKGYGFIEYETMQAALEAIASMNLFDLGGQYLRVGRAITPPNALM---GPPSGTSM 326
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKL 161
MPTAAAVAAAAATAKIQAMD A+NAV + L+KL
Sbjct: 327 MPTAAAVAAAAATAKIQAMDAVASNAVALGLTKL 360
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 134 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLA 193
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN +GG+ ++ VGR P A
Sbjct: 194 LEQMNGVMIGGRNIKVVGRPSNMPQA 219
>gi|340725363|ref|XP_003401040.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Bombus
terrestris]
gi|350403872|ref|XP_003486932.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Bombus
impatiens]
Length = 592
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/154 (83%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DIKSVFEAFGPI YCKL QGS
Sbjct: 194 VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGS 253
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
SPHRHKGYGFIEYET QA+ EAI+SMNLFDLGGQYLRVGRAITPPNAL GP TS
Sbjct: 254 SPHRHKGYGFIEYETMQAALEAIASMNLFDLGGQYLRVGRAITPPNALM---GPPSGTSM 310
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKL 161
MPTAAAVAAAAATAKIQAMD A+NAV + L+KL
Sbjct: 311 MPTAAAVAAAAATAKIQAMDAVASNAVALGLTKL 344
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 118 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLA 177
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN +GG+ ++ VGR P A
Sbjct: 178 LEQMNGVMIGGRNIKVVGRPSNMPQA 203
>gi|328783360|ref|XP_001121000.2| PREDICTED: poly(U)-binding-splicing factor half pint-like [Apis
mellifera]
Length = 592
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/154 (83%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DIKSVFEAFGPI YCKL QGS
Sbjct: 194 VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGS 253
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
SPHRHKGYGFIEYET QA+ EAI+SMNLFDLGGQYLRVGRAITPPNAL GP TS
Sbjct: 254 SPHRHKGYGFIEYETMQAALEAIASMNLFDLGGQYLRVGRAITPPNALM---GPPSGTSM 310
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKL 161
MPTAAAVAAAAATAKIQAMD A+NAV + L+KL
Sbjct: 311 MPTAAAVAAAAATAKIQAMDAVASNAVALGLTKL 344
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 118 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLA 177
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN +GG+ ++ VGR P A
Sbjct: 178 LEQMNGVMIGGRNIKVVGRPSNMPQA 203
>gi|383861059|ref|XP_003706004.1| PREDICTED: poly(U)-binding-splicing factor half pint-like
[Megachile rotundata]
Length = 592
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/154 (83%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DIKSVFEAFGPI YCKL QGS
Sbjct: 194 VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGS 253
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
SPHRHKGYGFIEYET QA+ EAI+SMNLFDLGGQYLRVGRAITPPNAL GP TS
Sbjct: 254 SPHRHKGYGFIEYETMQAALEAIASMNLFDLGGQYLRVGRAITPPNALM---GPPSGTSM 310
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKL 161
MPTAAAVAAAAATAKIQAMD A+NAV + L+KL
Sbjct: 311 MPTAAAVAAAAATAKIQAMDAVASNAVALGLTKL 344
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 118 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLA 177
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN +GG+ ++ VGR P A
Sbjct: 178 LEQMNGVMIGGRNIKVVGRPSNMPQA 203
>gi|307177474|gb|EFN66601.1| Poly(U)-binding-splicing factor half pint [Camponotus floridanus]
Length = 510
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/154 (83%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTE+DIKSVFEAFGPI YCKL QGS
Sbjct: 112 VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEDDIKSVFEAFGPITYCKLAQGS 171
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
SPHRHKGYGFIEYET QA+ EAI+SMNLFDLGGQYLRVGRAITPPNAL GP TS
Sbjct: 172 SPHRHKGYGFIEYETMQAALEAIASMNLFDLGGQYLRVGRAITPPNALM---GPPSGTSM 228
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKL 161
MPTAAAVAAAAATAKIQAMD A+NAV + L+KL
Sbjct: 229 MPTAAAVAAAAATAKIQAMDAVASNAVALGLTKL 262
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 36 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLA 95
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN +GG+ ++ VGR P A
Sbjct: 96 LEQMNGVMIGGRNIKVVGRPSNMPQA 121
>gi|345484300|ref|XP_003424998.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
half pint-like [Nasonia vitripennis]
Length = 605
Score = 232 bits (591), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 128/154 (83%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQSVIDEITEE+K YNRIY+ASIH DLTEEDIKSVFEAFGPI YCKL QGS
Sbjct: 196 VGRPSNMPQAQSVIDEITEESKHYNRIYIASIHQDLTEEDIKSVFEAFGPITYCKLAQGS 255
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
SPHRHKGYGFIEYE+ Q++ EAI+SMNLFDLGGQYLRVGRAITPPNAL GP TS
Sbjct: 256 SPHRHKGYGFIEYESMQSALEAIASMNLFDLGGQYLRVGRAITPPNALM---GPPSGTSM 312
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKL 161
MPTAAAVAAAAATAKIQAMD A+NAV + LSKL
Sbjct: 313 MPTAAAVAAAAATAKIQAMDAVASNAVALGLSKL 346
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + + +HKG+ F+EYE +A+ A
Sbjct: 120 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPATQKHKGFAFVEYEIPEAAQLA 179
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN +GG+ ++ VGR P A
Sbjct: 180 LEQMNGVMIGGRNIKVVGRPSNMPQA 205
>gi|189234753|ref|XP_974490.2| PREDICTED: similar to STE20-like kinase (yeast) [Tribolium
castaneum]
Length = 1819
Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats.
Identities = 128/156 (82%), Positives = 137/156 (87%), Gaps = 4/156 (2%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQ+VIDEI EEAK YNRIYVASIHPDLTE+DIKSVFEAFGPI YCKL QGS
Sbjct: 172 VGRPSNMPQAQAVIDEIQEEAKQYNRIYVASIHPDLTEDDIKSVFEAFGPIIYCKLAQGS 231
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
S H+HKGYGFIEYET QA+NEAI+SMNLFDLGGQYLRVGRAITPPNAL GP+ +S
Sbjct: 232 SGHKHKGYGFIEYETAQAANEAIASMNLFDLGGQYLRVGRAITPPNAL---LGPSSGSSV 288
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKLSQ 163
MPTAAAVAAAAATAKIQAMD A+NA + SKLSQ
Sbjct: 289 MPTAAAVAAAAATAKIQAMDAVASNAAALGFSKLSQ 324
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKY 61
Q H Q S Q Q + L R+YV SI +L E+ I+ F FGPIK
Sbjct: 72 QTLAHQQQQMASQRTQVQR-----QQALALMCRVYVGSISFELKEDTIRQSFLPFGPIKS 126
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR-VGRAITPPNA 115
+ +HKG+ F+EYE +A+ A+ MN +GG+ ++ VGR P A
Sbjct: 127 INMSWDPVTQKHKGFAFVEYEIPEAAQLALEQMNGVMIGGRNIKVVGRPSNMPQA 181
>gi|242021379|ref|XP_002431122.1| Poly U-binding-splicing factor half pint, putative [Pediculus
humanus corporis]
gi|212516371|gb|EEB18384.1| Poly U-binding-splicing factor half pint, putative [Pediculus
humanus corporis]
Length = 571
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/158 (77%), Positives = 137/158 (86%), Gaps = 5/158 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ+VIDEITEEAK YNRIYVASIH DLTE+DI+SVFEAFG IKYCKL
Sbjct: 172 NIKVGRPSNMPQAQAVIDEITEEAKHYNRIYVASIHSDLTEQDIQSVFEAFGSIKYCKLA 231
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA-P 124
QG +P++HKGYGFIEYET Q++ EAI SMNLFDLGGQYLRVGRAITPPNAL GP+ P
Sbjct: 232 QGHAPNKHKGYGFIEYETLQSALEAIGSMNLFDLGGQYLRVGRAITPPNAL---AGPSTP 288
Query: 125 STSHMPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKL 161
MPTAAAVAAAAATAKIQAMD A+NAV + L+KL
Sbjct: 289 GAGAMPTAAAVAAAAATAKIQAMDAVASNAVTLGLAKL 326
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EY+ +A+ A
Sbjct: 100 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYDIPEAAQLA 159
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 160 LEQMNGVMIGGRNIKVGRPSNMPQA 184
>gi|118785284|ref|XP_314526.3| AGAP010553-PA [Anopheles gambiae str. PEST]
gi|116128011|gb|EAA09944.4| AGAP010553-PA [Anopheles gambiae str. PEST]
Length = 643
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 120/157 (76%), Positives = 133/157 (84%), Gaps = 4/157 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDEI EEAK YNRIY+ASIHPDLTEEDIKSVFEAFGPI CK+
Sbjct: 230 NIKVGRPSNMPQAQQVIDEIQEEAKSYNRIYIASIHPDLTEEDIKSVFEAFGPIMTCKMS 289
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG++ H HKGYGFIEY+T Q++ EAI+SMNLFDLGGQ LRVGR+ITPPNAL GPA +
Sbjct: 290 QGNAVHTHKGYGFIEYQTNQSAIEAIASMNLFDLGGQLLRVGRSITPPNALM---GPA-A 345
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLS 162
S MPTAAAVAAAAATAKIQAMD ATNAV LS S
Sbjct: 346 NSAMPTAAAVAAAAATAKIQAMDAVATNAVLGLSATS 382
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I++ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 158 LMCRVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 217
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN LGG+ ++VGR P A
Sbjct: 218 LEQMNGAMLGGRNIKVGRPSNMPQA 242
>gi|357631053|gb|EHJ78771.1| hypothetical protein KGM_03904 [Danaus plexippus]
Length = 591
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/155 (78%), Positives = 133/155 (85%), Gaps = 5/155 (3%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGRPSNMPQAQ+VIDEI EEAK YNRIYVASIHP+LTE+DIK+VFEAFGPI YCKL G+
Sbjct: 214 VGRPSNMPQAQAVIDEIQEEAKQYNRIYVASIHPELTEDDIKNVFEAFGPITYCKLAYGA 273
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
S H+HKGYGFIEY T A+ EAI+SMNLFDLGGQYLRVGRAITPPNAL GP P S
Sbjct: 274 SAHKHKGYGFIEYATLPAALEAIASMNLFDLGGQYLRVGRAITPPNAL---AGP-PQASA 329
Query: 129 MPTAAAVAAAAATAKIQAMDGGATNAVGV-LSKLS 162
MPTAAAVAAAAATAKIQAMD A+NAV + L+KL+
Sbjct: 330 MPTAAAVAAAAATAKIQAMDAVASNAVALGLTKLN 364
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE +A+ +
Sbjct: 138 LMCRVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLS 197
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN LGG+ ++ VGR P A
Sbjct: 198 LEQMNGVMLGGRNIKVVGRPSNMPQA 223
>gi|157105905|ref|XP_001649078.1| fuse-binding protein-interacting repressor siahbp1 [Aedes aegypti]
gi|108879987|gb|EAT44212.1| AAEL004415-PA [Aedes aegypti]
Length = 672
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/154 (77%), Positives = 131/154 (85%), Gaps = 4/154 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDEI EEAK YNRIY+ASIHPDLTEEDIKSVFEAFGPI CK+
Sbjct: 256 NIKVGRPSNMPQAQQVIDEIQEEAKNYNRIYIASIHPDLTEEDIKSVFEAFGPIVTCKMS 315
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QGS+ H HKGY FIEY+T Q++ EAI+SMNLFDLGGQ LRVGR+ITPPNAL GPA +
Sbjct: 316 QGSAAHTHKGYAFIEYQTNQSAIEAIASMNLFDLGGQLLRVGRSITPPNALM---GPA-A 371
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAVGVLS 159
S MPTAAAVAAAAATAKIQAMD ATNAV LS
Sbjct: 372 NSAMPTAAAVAAAAATAKIQAMDAVATNAVLGLS 405
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I++ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 184 LMCRVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 243
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN LGG+ ++VGR P A
Sbjct: 244 LEQMNGAMLGGRNIKVGRPSNMPQA 268
>gi|24655233|ref|NP_728610.1| poly U binding factor 68kD, isoform B [Drosophila melanogaster]
gi|24655237|ref|NP_728611.1| poly U binding factor 68kD, isoform C [Drosophila melanogaster]
gi|24655242|ref|NP_728612.1| poly U binding factor 68kD, isoform D [Drosophila melanogaster]
gi|281365434|ref|NP_001163315.1| poly U binding factor 68kD, isoform E [Drosophila melanogaster]
gi|281365436|ref|NP_001163316.1| poly U binding factor 68kD, isoform F [Drosophila melanogaster]
gi|281365438|ref|NP_001163317.1| poly U binding factor 68kD, isoform G [Drosophila melanogaster]
gi|281365440|ref|NP_001163318.1| poly U binding factor 68kD, isoform H [Drosophila melanogaster]
gi|281365442|ref|NP_001163319.1| poly U binding factor 68kD, isoform I [Drosophila melanogaster]
gi|281365444|ref|NP_001163320.1| poly U binding factor 68kD, isoform J [Drosophila melanogaster]
gi|7292089|gb|AAF47502.1| poly U binding factor 68kD, isoform C [Drosophila melanogaster]
gi|10727221|gb|AAG22221.1| poly U binding factor 68kD, isoform B [Drosophila melanogaster]
gi|16768670|gb|AAL28554.1| HL02140p [Drosophila melanogaster]
gi|23092776|gb|AAG22222.2| poly U binding factor 68kD, isoform D [Drosophila melanogaster]
gi|27820105|gb|AAO25077.1| GH01086p [Drosophila melanogaster]
gi|220953270|gb|ACL89178.1| pUf68-PB [synthetic construct]
gi|272454997|gb|ACZ94587.1| poly U binding factor 68kD, isoform E [Drosophila melanogaster]
gi|272454998|gb|ACZ94588.1| poly U binding factor 68kD, isoform F [Drosophila melanogaster]
gi|272454999|gb|ACZ94589.1| poly U binding factor 68kD, isoform G [Drosophila melanogaster]
gi|272455000|gb|ACZ94590.1| poly U binding factor 68kD, isoform H [Drosophila melanogaster]
gi|272455001|gb|ACZ94591.1| poly U binding factor 68kD, isoform I [Drosophila melanogaster]
gi|272455002|gb|ACZ94592.1| poly U binding factor 68kD, isoform J [Drosophila melanogaster]
Length = 545
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/156 (75%), Positives = 132/156 (84%), Gaps = 6/156 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 108 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 167
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 168 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 222
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSK 160
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+
Sbjct: 223 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQ 258
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 36 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 95
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 96 LEQMNGALMGGRNIKVGRPSNMPQA 120
>gi|19224321|gb|AAL86452.1|AF479079_1 half pint [Drosophila melanogaster]
Length = 637
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 134/161 (83%), Gaps = 6/161 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 200 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 259
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 260 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 314
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLSQVF 165
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+ + V
Sbjct: 315 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVM 355
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 128 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 187
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 188 LEQMNGALMGGRNIKVGRPSNMPQA 212
>gi|195490418|ref|XP_002093131.1| GE20955 [Drosophila yakuba]
gi|194179232|gb|EDW92843.1| GE20955 [Drosophila yakuba]
Length = 637
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 134/161 (83%), Gaps = 6/161 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 200 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 259
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 260 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 314
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLSQVF 165
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+ + V
Sbjct: 315 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVM 355
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 128 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 187
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 188 LEQMNGALMGGRNIKVGRPSNMPQA 212
>gi|195336594|ref|XP_002034920.1| GM14211 [Drosophila sechellia]
gi|194128013|gb|EDW50056.1| GM14211 [Drosophila sechellia]
Length = 616
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 134/161 (83%), Gaps = 6/161 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 179 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 238
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 239 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 293
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLSQVF 165
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+ + V
Sbjct: 294 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVM 334
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 107 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 166
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 167 LEQMNGALMGGRNIKVGRPSNMPQA 191
>gi|195586940|ref|XP_002083225.1| GD13472 [Drosophila simulans]
gi|194195234|gb|EDX08810.1| GD13472 [Drosophila simulans]
Length = 541
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 134/161 (83%), Gaps = 6/161 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 179 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 238
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 239 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 293
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLSQVF 165
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+ + V
Sbjct: 294 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVM 334
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 107 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 166
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 167 LEQMNGALMGGRNIKVGRPSNMPQA 191
>gi|6118522|gb|AAF04132.1|AF190745_1 poly-U binding splicing factor [Drosophila melanogaster]
Length = 637
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 134/161 (83%), Gaps = 6/161 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 200 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 259
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 260 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 314
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLSQVF 165
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+ + V
Sbjct: 315 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVM 355
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 128 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 187
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 188 LEQMNGALMGGRNIKVGRPSNMPQA 212
>gi|195167652|ref|XP_002024647.1| GL22585 [Drosophila persimilis]
gi|198467049|ref|XP_001354234.2| GA11385 [Drosophila pseudoobscura pseudoobscura]
gi|194108052|gb|EDW30095.1| GL22585 [Drosophila persimilis]
gi|198149485|gb|EAL31287.2| GA11385 [Drosophila pseudoobscura pseudoobscura]
Length = 653
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/156 (75%), Positives = 132/156 (84%), Gaps = 6/156 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 200 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 259
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 260 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 314
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSK 160
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+
Sbjct: 315 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQ 350
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 128 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 187
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 188 LEQMNGALMGGRNIKVGRPSNMPQA 212
>gi|194747299|ref|XP_001956090.1| GF25032 [Drosophila ananassae]
gi|190623372|gb|EDV38896.1| GF25032 [Drosophila ananassae]
Length = 643
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/156 (75%), Positives = 132/156 (84%), Gaps = 6/156 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 199 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 258
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 259 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----VPT 313
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSK 160
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+
Sbjct: 314 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQ 349
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 127 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 186
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 187 LEQMNGALMGGRNIKVGRPSNMPQA 211
>gi|24655228|ref|NP_525123.2| poly U binding factor 68kD, isoform A [Drosophila melanogaster]
gi|41688713|sp|Q8T6B9.2|PUF68_DROME RecName: Full=Poly(U)-binding-splicing factor half pint;
Short=Protein half pint; AltName: Full=68 kDa
poly(U)-binding-splicing factor; AltName: Full=PUF60
homolog
gi|7292088|gb|AAF47501.1| poly U binding factor 68kD, isoform A [Drosophila melanogaster]
Length = 637
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 134/161 (83%), Gaps = 6/161 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 200 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 259
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 260 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 314
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLSQVF 165
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+ + V
Sbjct: 315 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVM 355
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 128 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 187
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 188 LEQMNGALMGGRNIKVGRPSNMPQA 212
>gi|194864858|ref|XP_001971142.1| GG14596 [Drosophila erecta]
gi|190652925|gb|EDV50168.1| GG14596 [Drosophila erecta]
Length = 731
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 134/161 (83%), Gaps = 6/161 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 294 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 353
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 354 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 408
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLSQVF 165
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+ + V
Sbjct: 409 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVM 449
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 222 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 281
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 282 LEQMNGALMGGRNIKVGRPSNMPQA 306
>gi|170057956|ref|XP_001864710.1| fuse-binding protein-interacting repressor siahbp1 [Culex
quinquefasciatus]
gi|167877220|gb|EDS40603.1| fuse-binding protein-interacting repressor siahbp1 [Culex
quinquefasciatus]
Length = 661
Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/154 (77%), Positives = 130/154 (84%), Gaps = 4/154 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDEI EEAK YNRIY+ASIHPDLTEEDIKSVFEAFG I CK+
Sbjct: 243 NIKVGRPSNMPQAQQVIDEIQEEAKNYNRIYIASIHPDLTEEDIKSVFEAFGAIATCKMS 302
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QGSS H HKGY FIEY+T Q++ EAI+SMNLFDLGGQ LRVGR+ITPPNAL GPA +
Sbjct: 303 QGSSAHSHKGYAFIEYQTNQSAIEAIASMNLFDLGGQLLRVGRSITPPNALM---GPA-A 358
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAVGVLS 159
S MPTAAAVAAAAATAKIQAMD ATNAV LS
Sbjct: 359 NSAMPTAAAVAAAAATAKIQAMDAVATNAVLGLS 392
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I++ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 171 LMCRVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 230
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN LGG+ ++VGR P A
Sbjct: 231 LEQMNGAMLGGRNIKVGRPSNMPQA 255
>gi|195014784|ref|XP_001984080.1| GH15204 [Drosophila grimshawi]
gi|193897562|gb|EDV96428.1| GH15204 [Drosophila grimshawi]
Length = 643
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/156 (75%), Positives = 131/156 (83%), Gaps = 6/156 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+E+DIKSVFEAFGPI YCKL
Sbjct: 202 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEDDIKSVFEAFGPILYCKLA 261
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QGSS H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPN L P+
Sbjct: 262 QGSSVHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNVLS-----CPT 316
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSK 160
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+
Sbjct: 317 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQ 352
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I++ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 130 LMCRVYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 189
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 190 LEQMNGALMGGRNIKVGRPSNMPQA 214
>gi|195427509|ref|XP_002061819.1| GK17204 [Drosophila willistoni]
gi|194157904|gb|EDW72805.1| GK17204 [Drosophila willistoni]
Length = 631
Score = 211 bits (537), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 116/151 (76%), Positives = 129/151 (85%), Gaps = 6/151 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 180 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 239
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 240 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 294
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAV 155
T S MPTAAAVAAAAATAKIQA+D A+NAV
Sbjct: 295 TNSTMPTAAAVAAAAATAKIQALDAVASNAV 325
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I++ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 108 LMCRVYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 167
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 168 LEQMNGALMGGRNIKVGRPSNMPQA 192
>gi|289724641|gb|ADD18299.1| poly-U binding splicing factor [Glossina morsitans morsitans]
Length = 611
Score = 211 bits (537), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/155 (76%), Positives = 130/155 (83%), Gaps = 6/155 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDEI EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 170 NIKVGRPSNMPQAQQVIDEIQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 229
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
G+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 230 PGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNAL-----VCPT 284
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLS 159
T S MPTAAAVAAAAATAKIQA+D A+NAV LS
Sbjct: 285 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLS 319
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I++ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 98 LMCRVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 157
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 158 LEQMNGALMGGRNIKVGRPSNMPQA 182
>gi|195375406|ref|XP_002046492.1| GJ12466 [Drosophila virilis]
gi|194153650|gb|EDW68834.1| GJ12466 [Drosophila virilis]
Length = 645
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/155 (74%), Positives = 131/155 (84%), Gaps = 4/155 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+E+DIKSVFEAFGPI YCKL
Sbjct: 213 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEDDIKSVFEAFGPILYCKLA 272
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPN L PA +
Sbjct: 273 QGTSVHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNVLSC---PA-T 328
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSK 160
S MPTAAAVAAAAATAKIQA+D A+NAV LS+
Sbjct: 329 NSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQ 363
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I++ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 141 LMCRVYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 200
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 201 LEQMNGALMGGRNIKVGRPSNMPQA 225
>gi|195135155|ref|XP_002012000.1| GI16722 [Drosophila mojavensis]
gi|193918264|gb|EDW17131.1| GI16722 [Drosophila mojavensis]
Length = 616
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/150 (76%), Positives = 128/150 (85%), Gaps = 4/150 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+E+DIKSVFEAFGPI YCKL
Sbjct: 179 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEDDIKSVFEAFGPILYCKLA 238
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPN L PA +
Sbjct: 239 QGTSVHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNVLSC---PA-T 294
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAV 155
S MPTAAAVAAAAATAKIQA+D A+NAV
Sbjct: 295 NSTMPTAAAVAAAAATAKIQALDAVASNAV 324
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I++ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 107 LMCRVYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 166
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 167 LEQMNGALMGGRNIKVGRPSNMPQA 191
>gi|326514938|dbj|BAJ99830.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 638
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 115/143 (80%), Gaps = 2/143 (1%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ +ID++TEEAK YNRIY+ASIHPDLTE DI+SVFEAFG IK C L
Sbjct: 197 NIKVGRPSNMPQAQPIIDQLTEEAKNYNRIYIASIHPDLTETDIQSVFEAFGEIKSCVLA 256
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ ++ +HKGYGFIEY T QA+ +AIS+MNLFDLGGQ+LRVG+AITPP L +S P
Sbjct: 257 KDTATSKHKGYGFIEYGTVQAAQDAISAMNLFDLGGQHLRVGKAITPPEGLFASAQPI-- 314
Query: 126 TSHMPTAAAVAAAAATAKIQAMD 148
S MPTA A+A A TA++QA D
Sbjct: 315 ASPMPTATALAVATITAQLQAKD 337
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L RIY+ SI+ +L E +K F+ FGP+K L +RHKG+ F+EYE +A+ +
Sbjct: 125 LMCRIYIGSINFELNEAMLKQAFQPFGPVKAVSLTFDPVTNRHKGFAFLEYEIPEAAQLS 184
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
I MN LGG+ ++VGR P A
Sbjct: 185 IEQMNGVILGGRNIKVGRPSNMPQA 209
>gi|427776743|gb|JAA53823.1| Putative polypyrimidine tract-binding protein puf60 rrm superfamily
[Rhipicephalus pulchellus]
Length = 579
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 123/152 (80%), Gaps = 4/152 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQA ++D+I EEAK YNRIY+AS+H DLTE DI+SVFEAFG I+ CKL
Sbjct: 144 NIKVGRPSNMPQAAPILDQIMEEAKTYNRIYIASVHQDLTESDIQSVFEAFGKIRSCKLI 203
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
S+P +HK YGFIEYET +NEAI+SMNLFDLGGQYLRVGRAITPPNAL P +
Sbjct: 204 PSSTPGKHKEYGFIEYETNVGANEAIASMNLFDLGGQYLRVGRAITPPNALT----PPSA 259
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAVGV 157
S MPTAAAVAAAAATAKIQAMD A NA+ +
Sbjct: 260 QSCMPTAAAVAAAAATAKIQAMDAVANNALAL 291
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ IK F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 72 LMCRVYVGSISFELKEDTIKQAFRPFGPIKSINMSWDPVTQKHKGFAFVEYELPEAAQLA 131
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 132 LEQMNGVLIGGRNIKVGRPSNMPQA 156
>gi|346468399|gb|AEO34044.1| hypothetical protein [Amblyomma maculatum]
Length = 577
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 123/152 (80%), Gaps = 4/152 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQA ++D+I EEAK YNRIY+AS+H DLTE DI+SVFEAFG I+ CKL
Sbjct: 144 NIKVGRPSNMPQAAPILDQIMEEAKTYNRIYIASVHQDLTESDIQSVFEAFGKIRSCKLI 203
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
S+P +HK YGFIEYET +NEAI+SMNLFDLGGQYLRVGRAITPPNAL P +
Sbjct: 204 PSSTPGKHKEYGFIEYETNVGANEAIASMNLFDLGGQYLRVGRAITPPNALT----PPSA 259
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAVGV 157
S MPTAAAVAAAAATAKIQAMD A NA+ +
Sbjct: 260 QSCMPTAAAVAAAAATAKIQAMDAVANNALAL 291
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ IK F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 72 LMCRVYVGSISFELKEDTIKQAFRPFGPIKSINMSWDPVTQKHKGFAFVEYELPEAAQLA 131
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 132 LEQMNGVLIGGRNIKVGRPSNMPQA 156
>gi|241315296|ref|XP_002408027.1| RNA-binding protein, putative [Ixodes scapularis]
gi|215497243|gb|EEC06737.1| RNA-binding protein, putative [Ixodes scapularis]
Length = 509
Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 106/150 (70%), Positives = 122/150 (81%), Gaps = 4/150 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQA ++D+I EEAK YNRIY+AS+H DLTE DI+SVFEAFG I+ CKL
Sbjct: 145 NIKVGRPSNMPQAAPILDQIMEEAKTYNRIYIASVHQDLTEADIQSVFEAFGKIRTCKLV 204
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
S+P +HK YGFIEYET +NEAI+SMNLFDLGGQYLRVGRAITPPNAL P +
Sbjct: 205 PSSTPGKHKEYGFIEYETNVGANEAIASMNLFDLGGQYLRVGRAITPPNALT----PPSA 260
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAV 155
S MPTAAAVAAAAATAKIQAMD A NA+
Sbjct: 261 QSCMPTAAAVAAAAATAKIQAMDAVANNAL 290
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV SI +L E+ IK F FGPIK + +HKG+ F+EYE +A+ A+ M
Sbjct: 77 VYVGSISFELKEDTIKQAFRPFGPIKSINMSWDPVTQKHKGFAFVEYELPEAAQLALEQM 136
Query: 95 NLFDLGGQYLRVGRAITPPNA 115
N +GG+ ++VGR P A
Sbjct: 137 NGVLIGGRNIKVGRPSNMPQA 157
>gi|427794969|gb|JAA62936.1| Putative polypyrimidine tract-binding protein puf60 rrm
superfamily, partial [Rhipicephalus pulchellus]
Length = 416
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 123/152 (80%), Gaps = 4/152 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQA ++D+I EEAK YNRIY+AS+H DLTE DI+SVFEAFG I+ CKL
Sbjct: 224 NIKVGRPSNMPQAAPILDQIMEEAKTYNRIYIASVHQDLTESDIQSVFEAFGKIRSCKLI 283
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
S+P +HK YGFIEYET +NEAI+SMNLFDLGGQYLRVGRAITPPNAL P +
Sbjct: 284 PSSTPGKHKEYGFIEYETNVGANEAIASMNLFDLGGQYLRVGRAITPPNALT----PPSA 339
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAVGV 157
S MPTAAAVAAAAATAKIQAMD A NA+ +
Sbjct: 340 QSCMPTAAAVAAAAATAKIQAMDAVANNALAL 371
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ IK F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 152 LMCRVYVGSISFELKEDTIKQAFRPFGPIKSINMSWDPVTQKHKGFAFVEYELPEAAQLA 211
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 212 LEQMNGVLIGGRNIKVGRPSNMPQA 236
>gi|321479211|gb|EFX90167.1| hypothetical protein DAPPUDRAFT_300177 [Daphnia pulex]
Length = 612
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/158 (65%), Positives = 128/158 (81%), Gaps = 5/158 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDEI EE++ YNRI++AS+HPDLTEEDIKSVFEAFG IK C+L
Sbjct: 190 NIKVGRPSNMPQAQPVIDEIMEESRHYNRIFIASVHPDLTEEDIKSVFEAFGKIKMCQLA 249
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG +P +H+GYGFIEYET Q++++AI+SMN+FDLGGQ+LRVGRAITPPN SS +
Sbjct: 250 QGPAPGKHRGYGFIEYETTQSAHDAIASMNMFDLGGQHLRVGRAITPPN---SSVVTSSY 306
Query: 126 TSHMPTAAAVAAAAATAKIQAMD--GGATNAVGVLSKL 161
+PT AA+AAAAATA+IQAMD GA + G L L
Sbjct: 307 LRMLPTQAALAAAAATARIQAMDAVAGALSGTGGLPGL 344
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ ++ F FGPIK + +HKG+ F+EYE +A+ A
Sbjct: 118 LMCRVYVGSISFELREDTVRQSFHPFGPIKSITMSWDPITQKHKGFAFVEYELPEAAQLA 177
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 178 LEQMNGVVIGGRNIKVGRPSNMPQA 202
>gi|328704296|ref|XP_001948399.2| PREDICTED: poly(U)-binding-splicing factor half pint-like
[Acyrthosiphon pisum]
Length = 572
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/161 (68%), Positives = 124/161 (77%), Gaps = 12/161 (7%)
Query: 9 VGRPSNMPQAQSVIDEITEEAK-LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG 67
VGRPSNMPQAQSVIDEI EEAK YN +YVASIH +LTE+DIK VFEAFGPI+ C L +
Sbjct: 181 VGRPSNMPQAQSVIDEIWEEAKQYYNFVYVASIHLNLTEDDIKCVFEAFGPIRTCTLAKS 240
Query: 68 SSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTS 127
+ +RH+GYGFIEYE QA+ EAISSMNLFDLGG+ LRVGRAITPP AL+ PS+S
Sbjct: 241 RTSNRHRGYGFIEYEGHQAAIEAISSMNLFDLGGRSLRVGRAITPPYALY-----VPSSS 295
Query: 128 -HMPTAAAV-----AAAAATAKIQAMDGGATNAVGVLSKLS 162
HMP AA+V AA ATA +QAMD GATN V LSKLS
Sbjct: 296 RHMPAAASVRASAFAATTATATVQAMDAGATNEVLSLSKLS 336
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV +I +L E+ IK F FG IK + +HKGY F+EYE +A+ A
Sbjct: 105 LMCRVYVGNISFELKEDSIKQAFSPFGFIKSIDMSWDPITRKHKGYAFVEYEIPEAAQLA 164
Query: 91 ISSMNLFDLGGQYLR-VGRAITPPNA 115
+ MN GG+ ++ VGR P A
Sbjct: 165 LEHMNGVVFGGRNIKVVGRPSNMPQA 190
>gi|291231691|ref|XP_002735797.1| PREDICTED: poly-U binding splicing factor 60KDa-like [Saccoglossus
kowalevskii]
Length = 528
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 98/128 (76%), Gaps = 2/128 (1%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ +ID++ EEAK YNRIYVAS+H DL+EEDIKSVFEAFG IK C L
Sbjct: 201 NIKVGRPSNMPQAQPIIDQVMEEAKQYNRIYVASVHHDLSEEDIKSVFEAFGKIKMCMLS 260
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP--A 123
S P +HKGYGFIEYE Q++ +AI+SMNLFDLGGQYLRVGRA+ + S P
Sbjct: 261 TDSIPSKHKGYGFIEYERNQSAQDAIASMNLFDLGGQYLRVGRALDAVAGITGSAAPPAL 320
Query: 124 PSTSHMPT 131
PS S MP
Sbjct: 321 PSQSLMPN 328
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI+ +L E+ IK F FGPIK L +HKG+ F+EY+ +A+ A
Sbjct: 129 LMCRVYVGSINFELREDTIKQAFLPFGPIKNINLSWDPVTMKHKGFAFVEYDLPEAAQLA 188
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 189 LEQMNGVMIGGRNIKVGRPSNMPQA 213
>gi|348541381|ref|XP_003458165.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oreochromis
niloticus]
Length = 513
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 121/155 (78%), Gaps = 6/155 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DIKSVFEAFG IK C L
Sbjct: 159 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGKIKSCMLA 218
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ + RHKGYGFIEYE Q++ +A++SMNLFDLGGQYLRVG+A+TPP L + P+
Sbjct: 219 REPTTGRHKGYGFIEYEKAQSAQDAVASMNLFDLGGQYLRVGKAVTPPMPLLT-----PT 273
Query: 126 TS-HMPTAAAVAAAAATAKIQAMDGGATNAVGVLS 159
TS +PTAAA+AAA ATAKI A + + +G L+
Sbjct: 274 TSGGLPTAAAMAAAVATAKITAQEAVGASVLGALA 308
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 75 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAF 134
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EYE +A+ A+ MN LGG+ ++VGR
Sbjct: 135 VEYEMPEAAQLALEQMNSVVLGGRNIKVGR 164
>gi|443719882|gb|ELU09834.1| hypothetical protein CAPTEDRAFT_172934 [Capitella teleta]
Length = 635
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 113/144 (78%), Gaps = 5/144 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ +I ++ EEAK YNRIYV SIH DL E D++SVFEAFG I C+LQ
Sbjct: 215 NIKVGRPSNMPQAQPIIAQLAEEAKTYNRIYVTSIHADLCESDVQSVFEAFGKIVMCQLQ 274
Query: 66 -QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAP 124
+ P +H+GYGFIEY+T QA+ +A++SMNLFDLGGQYLRVG+ +TPPNA + P
Sbjct: 275 PDPAKPGKHRGYGFIEYDTNQAALDAVASMNLFDLGGQYLRVGKCVTPPNATQAPAVP-- 332
Query: 125 STSHMPTAAAVAAAAATAKIQAMD 148
S MPTAAAVAAAA TAKI AM+
Sbjct: 333 --STMPTAAAVAAAAVTAKITAME 354
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L RIYV SI+ ++ E+ IK F FGPIK L ++HKG+ FIEY+ +A+ +
Sbjct: 143 LMCRIYVGSINFEIKEDTIKQAFLPFGPIKSVNLSWDPITNKHKGFAFIEYDIPEAAQLS 202
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 203 LEQMNGVMIGGRNIKVGRPSNMPQA 227
>gi|355780002|gb|EHH64478.1| 60 kDa poly(U)-binding-splicing factor [Macaca fascicularis]
Length = 521
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/133 (59%), Positives = 102/133 (76%), Gaps = 4/133 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 182 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 241
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 242 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG-- 299
Query: 126 TSHMPTAAAVAAA 138
+P AAAVA
Sbjct: 300 --GLPPAAAVAGG 310
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 110 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 169
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 170 LEQMNSVMLGGRNIKVGR 187
>gi|432911999|ref|XP_004078817.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oryzias
latipes]
Length = 523
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/155 (60%), Positives = 121/155 (78%), Gaps = 6/155 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL++EDIKSVFEAFG IK C L
Sbjct: 170 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDEDIKSVFEAFGRIKSCMLA 229
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ + RHKGYGFIEY+ Q+S +A++SMNLFDLGGQYLRVG+A+TPP L S P+
Sbjct: 230 REPTTGRHKGYGFIEYDKPQSSLDAVASMNLFDLGGQYLRVGKAVTPPMPLLS-----PT 284
Query: 126 TS-HMPTAAAVAAAAATAKIQAMDGGATNAVGVLS 159
T+ +P AAAVAAAAATAKI + D + +G L+
Sbjct: 285 TAGGLPAAAAVAAAAATAKITSHDPIGASMLGALA 319
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 86 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAF 145
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EYE +A+ A+ MN LGG+ ++VGR
Sbjct: 146 VEYEMPEAAQLALEQMNSVVLGGRNIKVGR 175
>gi|281341440|gb|EFB17024.1| hypothetical protein PANDA_011097 [Ailuropoda melanoleuca]
Length = 512
Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 101/130 (77%), Gaps = 4/130 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG-- 273
Query: 126 TSHMPTAAAV 135
+P AAAV
Sbjct: 274 --GLPPAAAV 281
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 84 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 143
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 144 LEQMNSVMLGGRNIKVGR 161
>gi|403302944|ref|XP_003942108.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 509
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 108/150 (72%), Gaps = 11/150 (7%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG-- 273
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAV 155
+P AATAKI A + A AV
Sbjct: 274 --GLP-------PAATAKITAQEAVAGAAV 294
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 84 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 143
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 144 LEQMNSVMLGGRNIKVGR 161
>gi|301773444|ref|XP_002922145.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60-like [Ailuropoda melanoleuca]
Length = 577
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 101/130 (77%), Gaps = 4/130 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 208 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 267
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 268 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG-- 325
Query: 126 TSHMPTAAAV 135
+P AAAV
Sbjct: 326 --GLPPAAAV 333
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 136 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 195
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 196 LEQMNSVMLGGRNIKVGR 213
>gi|403302946|ref|XP_003942109.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 492
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 108/150 (72%), Gaps = 11/150 (7%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 139 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 198
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 199 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG-- 256
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAV 155
+P AATAKI A + A AV
Sbjct: 257 --GLP-------PAATAKITAQEAVAGAAV 277
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 67 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 126
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 127 LEQMNSVMLGGRNIKVGR 144
>gi|111185612|gb|AAI19438.1| Puf60 protein [Mus musculus]
gi|152060991|gb|AAI48275.1| Puf60 protein [Mus musculus]
Length = 241
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 101/130 (77%), Gaps = 4/130 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 113 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 172
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 173 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG-- 230
Query: 126 TSHMPTAAAV 135
+P AAAV
Sbjct: 231 --GLPPAAAV 238
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 44 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 103
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 104 MNSVMLGGRNIKVGR 118
>gi|348503274|ref|XP_003439190.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oreochromis
niloticus]
Length = 526
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 96/118 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ YNRIYVAS+HPDL+++DIKSVFEAFG IK C L
Sbjct: 169 NIKVGRPSNIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTLA 228
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + RH+G+GFIEYE Q++ +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 229 RDPTTGRHRGFGFIEYEKPQSALDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTPG 286
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 85 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAF 144
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EY+ +A+ A+ MN LGG+ ++VGR
Sbjct: 145 VEYDVPEAAQLALEQMNSVMLGGRNIKVGR 174
>gi|432929636|ref|XP_004081203.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oryzias
latipes]
Length = 526
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 96/117 (82%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ YNRIYVAS+HPDL+++DIKSVFEAFG IK C L
Sbjct: 169 NIKVGRPSNIGQAQPIIDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCMLA 228
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + RH+G+GFIEYE Q++ +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 229 RDPTSGRHRGFGFIEYEKPQSAVDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTP 285
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 85 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAF 144
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EY+ +A+ A+ MN LGG+ ++VGR
Sbjct: 145 VEYDVPEAAQLALEQMNSVMLGGRNIKVGR 174
>gi|134025329|gb|AAI35084.1| LOC562370 protein [Danio rerio]
Length = 379
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 96/117 (82%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DIKSVFEAFG IK C L
Sbjct: 162 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLA 221
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEY+ Q++ +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 222 RDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 278
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 78 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAF 137
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EYE +A+ A+ MN LGG+ ++VGR
Sbjct: 138 VEYEVPEAAQLALEQMNSVMLGGRNIKVGR 167
>gi|410925539|ref|XP_003976238.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Takifugu
rubripes]
Length = 506
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 119/154 (77%), Gaps = 4/154 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DIKSVFEAFG IK C L
Sbjct: 162 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCLLA 221
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ + RHKGYGF+EY+ Q++ +A++SMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 222 REPTTGRHKGYGFVEYDKAQSAQDAVASMNLFDLGGQYLRVGKAVTPPVPLLTPATPG-- 279
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAVGVLS 159
+P AAAVAAAAA+AKI A + ++ +G L+
Sbjct: 280 --GLPAAAAVAAAAASAKITAQEVVGSSVLGALA 311
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSFDSVTMKHKGFAFVEYEMPEAAQLALEQ 152
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 153 MNSVVLGGRNIKVGR 167
>gi|157743332|ref|NP_001099058.1| poly(U)-binding-splicing factor PUF60 [Danio rerio]
gi|157423233|gb|AAI53302.1| LOC562370 protein [Danio rerio]
Length = 518
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 96/117 (82%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DIKSVFEAFG IK C L
Sbjct: 162 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLA 221
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEY+ Q++ +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 222 RDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 278
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 78 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAF 137
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EYE +A+ A+ MN LGG+ ++VGR
Sbjct: 138 VEYEVPEAAQLALEQMNSVMLGGRNIKVGR 167
>gi|444722723|gb|ELW63400.1| Poly(U)-binding-splicing factor PUF60 [Tupaia chinensis]
Length = 577
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 218 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 277
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 278 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 334
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 146 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 205
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 206 LEQMNSVMLGGRNIKVGR 223
>gi|187607191|ref|NP_001120082.1| poly-U binding splicing factor 60KDa [Xenopus (Silurana)
tropicalis]
gi|165971204|gb|AAI58522.1| LOC100145091 protein [Xenopus (Silurana) tropicalis]
Length = 507
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL++EDIKSVFEAFG IK C L
Sbjct: 147 NIKVGRPSNIGQAQPIIDQLAEEARSFNRIYVASVHQDLSDEDIKSVFEAFGKIKSCMLA 206
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 207 RDPTTGKHKGYGFIEYEKGQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 263
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 78 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 137
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 138 MNSVMLGGRNIKVGR 152
>gi|327290985|ref|XP_003230202.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Anolis
carolinensis]
Length = 541
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 178 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 237
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 238 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 294
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 109 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 168
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 169 MNSVMLGGRNIKVGR 183
>gi|296480748|tpg|DAA22863.1| TPA: poly(U)-binding-splicing factor PUF60 [Bos taurus]
Length = 530
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 170 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 229
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 230 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 286
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 98 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 157
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 158 LEQMNSVMLGGRNIKVGR 175
>gi|114051121|ref|NP_001039598.1| poly(U)-binding-splicing factor PUF60 [Bos taurus]
gi|122144872|sp|Q2HJG2.1|PUF60_BOVIN RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor
gi|88682957|gb|AAI05448.1| Poly-U binding splicing factor 60KDa [Bos taurus]
Length = 530
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 170 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 229
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 230 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 286
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 98 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 157
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 158 LEQMNSVMLGGRNIKVGR 175
>gi|71897303|ref|NP_001026551.1| poly(U)-binding-splicing factor PUF60 [Gallus gallus]
gi|60098673|emb|CAH65167.1| hypothetical protein RCJMB04_5e8 [Gallus gallus]
Length = 366
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 272
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 84 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 143
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 144 LEQMNSVMLGGRNIKVGR 161
>gi|449495396|ref|XP_002188522.2| PREDICTED: poly(U)-binding-splicing factor PUF60 [Taeniopygia
guttata]
Length = 514
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 272
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 147 MNSVMLGGRNIKVGR 161
>gi|410042302|ref|XP_003951411.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 513
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 153 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 212
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 213 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 269
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 81 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 140
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 141 LEQMNSVMLGGRNIKVGR 158
>gi|402794180|ref|NP_001258028.1| poly(U)-binding-splicing factor PUF60 isoform g [Homo sapiens]
gi|426360971|ref|XP_004047701.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Gorilla
gorilla gorilla]
gi|441648312|ref|XP_003280819.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1
[Nomascus leucogenys]
Length = 530
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 170 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 229
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 230 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 286
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 98 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 157
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 158 LEQMNSVMLGGRNIKVGR 175
>gi|410042304|ref|XP_003951412.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 530
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 170 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 229
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 230 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 286
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 98 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 157
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 158 LEQMNSVMLGGRNIKVGR 175
>gi|395512680|ref|XP_003760563.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Sarcophilus
harrisii]
Length = 553
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 193 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 252
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 253 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 309
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 121 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 180
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 181 LEQMNSVMLGGRNIKVGR 198
>gi|207079925|ref|NP_001128734.1| DKFZP468L0227 protein [Pongo abelii]
gi|402794126|ref|NP_001258026.1| poly(U)-binding-splicing factor PUF60 isoform e [Homo sapiens]
gi|426360969|ref|XP_004047700.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Gorilla
gorilla gorilla]
gi|441648309|ref|XP_003280820.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2
[Nomascus leucogenys]
gi|55725023|emb|CAH89379.1| hypothetical protein [Pongo abelii]
Length = 513
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 153 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 212
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 213 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 269
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 81 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 140
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 141 LEQMNSVMLGGRNIKVGR 158
>gi|417402731|gb|JAA48201.1| Putative polypyrimidine tract-binding protein puf60 rrm superfamily
[Desmodus rotundus]
Length = 558
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 198 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 257
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 258 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 314
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 126 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 185
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 186 LEQMNSVMLGGRNIKVGR 203
>gi|395860112|ref|XP_003802359.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1
[Otolemur garnettii]
Length = 558
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 198 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 257
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 258 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 314
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 126 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 185
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 186 LEQMNSVMLGGRNIKVGR 203
>gi|326918217|ref|XP_003205387.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Meleagris
gallopavo]
Length = 516
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 272
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 84 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 143
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 144 LEQMNSVMLGGRNIKVGR 161
>gi|431908112|gb|ELK11715.1| Poly(U)-binding-splicing factor PUF60 [Pteropus alecto]
Length = 501
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 141 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 200
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 201 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 257
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 72 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 131
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 132 MNSVMLGGRNIKVGR 146
>gi|74203983|dbj|BAE28998.1| unnamed protein product [Mus musculus]
Length = 564
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 204 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 263
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 264 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 321
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+Y SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 132 IMCRVYAGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 191
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 192 LEQMNSVMLGGRNIKVGR 209
>gi|338728499|ref|XP_003365686.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform 2
[Equus caballus]
Length = 516
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 272
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 84 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 143
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 144 LEQMNSVMLGGRNIKVGR 161
>gi|257196183|ref|NP_082640.2| poly(U)-binding-splicing factor PUF60 isoform a [Mus musculus]
gi|158563798|sp|Q3UEB3.2|PUF60_MOUSE RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor
gi|158563997|sp|Q9WV25.2|PUF60_RAT RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor; AltName:
Full=RNA-binding protein Siah-BP; AltName:
Full=Siah-binding protein 1
gi|148697573|gb|EDL29520.1| RIKEN cDNA 2410104I19, isoform CRA_a [Mus musculus]
gi|149066142|gb|EDM16015.1| siah binding protein 1; FBP interacting repressor; pyrimidine tract
binding splicing factor; Ro ribonucleoprotein-binding
protein 1, isoform CRA_a [Rattus norvegicus]
Length = 564
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 204 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 263
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 264 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 321
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 132 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 191
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 192 LEQMNSVMLGGRNIKVGR 209
>gi|359321052|ref|XP_848710.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Canis
lupus familiaris]
Length = 560
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 200 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 259
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 260 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 316
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 128 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 187
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 188 LEQMNSVMLGGRNIKVGR 205
>gi|332831342|ref|XP_528257.3| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Pan
troglodytes]
Length = 559
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 199 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 258
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 259 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 315
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 127 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 186
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 187 LEQMNSVMLGGRNIKVGR 204
>gi|126323028|ref|XP_001370705.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Monodelphis
domestica]
Length = 637
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 277 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 336
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 337 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 393
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 205 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 264
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 265 LEQMNSVMLGGRNIKVGR 282
>gi|390475872|ref|XP_002759200.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1
[Callithrix jacchus]
Length = 563
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 203 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 262
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 263 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 319
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 131 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 190
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 191 LEQMNSVMLGGRNIKVGR 208
>gi|348555826|ref|XP_003463724.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60-like [Cavia porcellus]
Length = 564
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 201 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 260
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 261 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 318
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 129 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 188
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 189 LEQMNSVMLGGRNIKVGR 206
>gi|338728501|ref|XP_001496155.3| PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform 1
[Equus caballus]
Length = 499
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 139 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 198
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 199 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 255
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 130 MNSVMLGGRNIKVGR 144
>gi|440911935|gb|ELR61552.1| Poly(U)-binding-splicing factor PUF60, partial [Bos grunniens
mutus]
Length = 561
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 194 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 253
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 254 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 311
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 122 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 181
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 182 LEQMNSVMLGGRNIKVGR 199
>gi|197100546|ref|NP_001127017.1| poly(U)-binding-splicing factor PUF60 [Pongo abelii]
gi|75040908|sp|Q5R469.1|PUF60_PONAB RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor
gi|55733539|emb|CAH93447.1| hypothetical protein [Pongo abelii]
Length = 558
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 198 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 257
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 258 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 314
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 126 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 185
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 186 LEQMNSVMLGGRNIKVGR 203
>gi|417402525|gb|JAA48108.1| Putative polypyrimidine tract-binding protein puf60 rrm superfamily
[Desmodus rotundus]
Length = 541
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 181 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 240
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 241 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 297
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 172 MNSVMLGGRNIKVGR 186
>gi|410042306|ref|XP_003951413.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 499
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 139 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 198
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 199 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 255
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 130 MNSVMLGGRNIKVGR 144
>gi|73974710|ref|XP_857040.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 6 [Canis
lupus familiaris]
Length = 543
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 183 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 242
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 243 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 299
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 111 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 170
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 171 LEQMNSVMLGGRNIKVGR 188
>gi|297300233|ref|XP_001087975.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 6 [Macaca
mulatta]
Length = 559
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 199 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 258
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 259 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 315
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 127 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 186
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 187 LEQMNSVMLGGRNIKVGR 204
>gi|402794155|ref|NP_001258027.1| poly(U)-binding-splicing factor PUF60 isoform f [Homo sapiens]
gi|119602601|gb|EAW82195.1| fuse-binding protein-interacting repressor, isoform CRA_l [Homo
sapiens]
Length = 558
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 198 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 257
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 258 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 314
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 126 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 185
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 186 LEQMNSVMLGGRNIKVGR 203
>gi|380810662|gb|AFE77206.1| poly(U)-binding-splicing factor PUF60 isoform a [Macaca mulatta]
gi|383416607|gb|AFH31517.1| poly(U)-binding-splicing factor PUF60 isoform a [Macaca mulatta]
Length = 560
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 200 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 259
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 260 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 316
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 128 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 187
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 188 LEQMNSVMLGGRNIKVGR 205
>gi|17978512|ref|NP_510965.1| poly(U)-binding-splicing factor PUF60 isoform a [Homo sapiens]
gi|397497388|ref|XP_003819493.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Pan
paniscus]
gi|402879352|ref|XP_003903307.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Papio
anubis]
gi|441648299|ref|XP_004090873.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Nomascus
leucogenys]
gi|74761960|sp|Q9UHX1.1|PUF60_HUMAN RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor; AltName:
Full=FUSE-binding protein-interacting repressor;
Short=FBP-interacting repressor; AltName:
Full=Ro-binding protein 1; Short=RoBP1; AltName:
Full=Siah-binding protein 1; Short=Siah-BP1
gi|6684440|gb|AAF23589.1|AF114818_1 Ro ribonucleoprotein-binding protein 1 [Homo sapiens]
gi|48146403|emb|CAG33424.1| SIAHBP1 [Homo sapiens]
gi|119602593|gb|EAW82187.1| fuse-binding protein-interacting repressor, isoform CRA_d [Homo
sapiens]
gi|158258178|dbj|BAF85062.1| unnamed protein product [Homo sapiens]
gi|410220384|gb|JAA07411.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
gi|410303418|gb|JAA30309.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
Length = 559
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 199 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 258
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 259 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 315
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 127 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 186
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 187 LEQMNSVMLGGRNIKVGR 204
>gi|395860114|ref|XP_003802360.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2
[Otolemur garnettii]
Length = 542
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 182 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 241
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 242 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 298
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 110 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 169
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 170 LEQMNSVMLGGRNIKVGR 187
>gi|332831344|ref|XP_003312009.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Pan
troglodytes]
Length = 542
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 182 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 241
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 242 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 298
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 110 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 169
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 170 LEQMNSVMLGGRNIKVGR 187
>gi|297300235|ref|XP_001087851.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 5 [Macaca
mulatta]
Length = 542
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 182 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 241
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 242 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 298
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 110 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 169
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 170 LEQMNSVMLGGRNIKVGR 187
>gi|300798352|ref|NP_001178809.1| poly(U)-binding-splicing factor PUF60 [Rattus norvegicus]
Length = 563
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 203 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 262
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 263 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 320
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 131 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 190
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 191 LEQMNSVMLGGRNIKVGR 208
>gi|402794118|ref|NP_001258025.1| poly(U)-binding-splicing factor PUF60 isoform d [Homo sapiens]
gi|119602600|gb|EAW82194.1| fuse-binding protein-interacting repressor, isoform CRA_k [Homo
sapiens]
Length = 541
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 181 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 240
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 241 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 297
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 109 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 168
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 169 LEQMNSVMLGGRNIKVGR 186
>gi|402794208|ref|NP_001258029.1| poly(U)-binding-splicing factor PUF60 isoform h [Homo sapiens]
gi|109087698|ref|XP_001087484.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Macaca
mulatta]
gi|332263566|ref|XP_003280822.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 4
[Nomascus leucogenys]
gi|16307289|gb|AAH09734.1| PUF60 protein [Homo sapiens]
gi|119602596|gb|EAW82190.1| fuse-binding protein-interacting repressor, isoform CRA_g [Homo
sapiens]
gi|261859062|dbj|BAI46053.1| poly-U binding splicing factor 60KDa [synthetic construct]
Length = 499
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 139 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 198
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 199 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 255
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 130 MNSVMLGGRNIKVGR 144
>gi|6176532|gb|AAF05605.1|AF190744_1 poly-U binding splicing factor PUF60 [Homo sapiens]
Length = 556
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 196 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 255
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 256 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 313
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 124 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 183
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 184 LEQMNSVMLGGRNIKVGR 201
>gi|410909355|ref|XP_003968156.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Takifugu
rubripes]
Length = 526
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 96/118 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DIKSVFEAFG IK C L
Sbjct: 169 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCMLA 228
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + RH+G+GFIEYE Q++ +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 229 RDPTSGRHRGFGFIEYEKPQSALDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTPG 286
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 85 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAF 144
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EY+ +A+ A+ MN LGG+ ++VGR
Sbjct: 145 VEYDVPEAAQLALEQMNSVMLGGRNIKVGR 174
>gi|209862867|ref|NP_001129505.1| poly(U)-binding-splicing factor PUF60 isoform c [Homo sapiens]
gi|109087696|ref|XP_001087604.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 3 [Macaca
mulatta]
gi|441648305|ref|XP_004090875.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Nomascus
leucogenys]
gi|15030041|gb|AAH11265.1| PUF60 protein [Homo sapiens]
gi|15080471|gb|AAH11979.1| PUF60 protein [Homo sapiens]
gi|119602595|gb|EAW82189.1| fuse-binding protein-interacting repressor, isoform CRA_f [Homo
sapiens]
Length = 516
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 272
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 84 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 143
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 144 LEQMNSVMLGGRNIKVGR 161
>gi|47221195|emb|CAG05516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 520
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 96/118 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DIKSVFEAFG IK C L
Sbjct: 163 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCMLA 222
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + RH+G+GFIEYE Q++ +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 223 RDPTSGRHRGFGFIEYEKPQSALDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTPG 280
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 79 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAF 138
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EY+ +A+ A+ MN LGG+ ++VGR
Sbjct: 139 VEYDVPEAAQLALEQMNSVMLGGRNIKVGR 168
>gi|1809248|gb|AAB41656.1| siah binding protein 1 [Homo sapiens]
Length = 541
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 181 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 240
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 241 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 298
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 109 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 168
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 169 LEQMNSVMLGGRNIKVGR 186
>gi|380810660|gb|AFE77205.1| poly(U)-binding-splicing factor PUF60 isoform b [Macaca mulatta]
gi|383416605|gb|AFH31516.1| poly(U)-binding-splicing factor PUF60 isoform b [Macaca mulatta]
Length = 543
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 183 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 242
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 243 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 299
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 111 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 170
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 171 LEQMNSVMLGGRNIKVGR 188
>gi|17298690|ref|NP_055096.2| poly(U)-binding-splicing factor PUF60 isoform b [Homo sapiens]
gi|397497390|ref|XP_003819494.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Pan
paniscus]
gi|402879354|ref|XP_003903308.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Papio
anubis]
gi|441648302|ref|XP_004090874.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Nomascus
leucogenys]
gi|17152040|gb|AAF27522.2|AF217197_1 FBP-interacting repressor [Homo sapiens]
gi|14250810|gb|AAH08875.1| Poly-U binding splicing factor 60KDa [Homo sapiens]
gi|119602594|gb|EAW82188.1| fuse-binding protein-interacting repressor, isoform CRA_e [Homo
sapiens]
gi|410220382|gb|JAA07410.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
gi|410303416|gb|JAA30308.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
Length = 542
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 182 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 241
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 242 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 298
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 110 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 169
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 170 LEQMNSVMLGGRNIKVGR 187
>gi|410042300|ref|XP_003951410.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 516
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 272
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 84 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 143
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 144 LEQMNSVMLGGRNIKVGR 161
>gi|351698432|gb|EHB01351.1| Poly(U)-binding-splicing factor PUF60, partial [Heterocephalus
glaber]
Length = 556
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 196 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 255
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 256 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 312
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 127 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 186
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 187 MNSVMLGGRNIKVGR 201
>gi|410987958|ref|XP_004000259.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Felis catus]
Length = 502
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 142 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 201
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 202 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 258
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 70 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 129
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 130 LEQMNSVMLGGRNIKVGR 147
>gi|5524727|gb|AAD44358.1|AF165892_1 RNA-binding protein SiahBP [Rattus norvegicus]
Length = 565
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 205 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 264
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 265 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 322
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 133 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 192
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 193 LEQMNSVMLGGRNIKVGR 210
>gi|148697575|gb|EDL29522.1| RIKEN cDNA 2410104I19, isoform CRA_c [Mus musculus]
Length = 546
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 186 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 245
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 246 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 303
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 114 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 173
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 174 LEQMNSVMLGGRNIKVGR 191
>gi|257196186|ref|NP_001158072.1| poly(U)-binding-splicing factor PUF60 isoform c [Mus musculus]
gi|14714891|gb|AAH10601.1| Puf60 protein [Mus musculus]
Length = 499
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 139 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 198
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 199 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 255
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 130 MNSVMLGGRNIKVGR 144
>gi|426235336|ref|XP_004011640.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60 [Ovis aries]
Length = 506
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 93/111 (83%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 153 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 212
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L
Sbjct: 213 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 263
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 81 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 140
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 141 LEQMNSVMLGGRNIKVGR 158
>gi|317420076|emb|CBN82112.1| Poly(U)-binding-splicing factor PUF60 [Dicentrarchus labrax]
Length = 513
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 96/118 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+HPDL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + RH+G+GFIEYE Q++ +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 RDPTTGRHRGFGFIEYEKPQSALDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTPG 273
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 72 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAF 131
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EY+ +A+ A+ MN LGG+ ++VGR
Sbjct: 132 VEYDVPEAAQLALEQMNSVMLGGRNIKVGR 161
>gi|76677895|ref|NP_598452.2| poly(U)-binding-splicing factor PUF60 isoform b [Mus musculus]
gi|74195824|dbj|BAE30474.1| unnamed protein product [Mus musculus]
gi|74221976|dbj|BAE40622.1| unnamed protein product [Mus musculus]
gi|148697574|gb|EDL29521.1| RIKEN cDNA 2410104I19, isoform CRA_b [Mus musculus]
gi|149066143|gb|EDM16016.1| siah binding protein 1; FBP interacting repressor; pyrimidine tract
binding splicing factor; Ro ribonucleoprotein-binding
protein 1, isoform CRA_b [Rattus norvegicus]
Length = 547
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 187 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 246
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 247 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 304
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 115 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 174
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 175 LEQMNSVMLGGRNIKVGR 192
>gi|355698276|gb|EHH28824.1| 60 kDa poly(U)-binding-splicing factor [Macaca mulatta]
Length = 568
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 208 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 267
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 268 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 325
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 139 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 198
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 199 MNSVMLGGRNIKVGR 213
>gi|354491098|ref|XP_003507693.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Cricetulus
griseus]
Length = 582
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 222 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 281
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 282 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 339
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 150 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 209
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 210 LEQMNSVMLGGRNIKVGR 227
>gi|148697576|gb|EDL29523.1| RIKEN cDNA 2410104I19, isoform CRA_d [Mus musculus]
Length = 553
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 193 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 252
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 253 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 309
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 121 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 180
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 181 LEQMNSVMLGGRNIKVGR 198
>gi|344236628|gb|EGV92731.1| Poly(U)-binding-splicing factor PUF60 [Cricetulus griseus]
Length = 271
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 139 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 198
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 199 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 256
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 130 MNSVMLGGRNIKVGR 144
>gi|335310331|ref|XP_003361983.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Sus scrofa]
Length = 362
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 83 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 142
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 143 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 200
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 73
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 74 MNSVMLGGRNIKVGR 88
>gi|355714554|gb|AES05042.1| poly-U binding splicing factor 60KDa [Mustela putorius furo]
Length = 314
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 93/111 (83%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 200 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 259
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L
Sbjct: 260 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 310
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 191 MNSVMLGGRNIKVGR 205
>gi|156398787|ref|XP_001638369.1| predicted protein [Nematostella vectensis]
gi|156225489|gb|EDO46306.1| predicted protein [Nematostella vectensis]
Length = 504
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 115/147 (78%), Gaps = 4/147 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+PQA +I++ +EAK Y RIY+AS+HPDL E+DIKSVFEAFG + +C L
Sbjct: 134 NIKVGRPSNVPQAAPLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAFGKVVHCSLS 193
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPP--NALHSSKGPA 123
+ +HKGYGFIEYE +Q++N+AI+SMNLFDLGGQ+LRVGRAITPP +A+ +
Sbjct: 194 KEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRVGRAITPPTSSAMAAINTTP 253
Query: 124 PSTSHMPTAAAVAAAAATAKIQAMDGG 150
P T +P AAA+AAAA +AKIQA + G
Sbjct: 254 PGT--LPAAAAIAAAAVSAKIQAEERG 278
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI+ +L EE I++ F FGPI L +HKG+ F+EY+ +A+ A
Sbjct: 62 LMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLA 121
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN LGG+ ++VGR P A
Sbjct: 122 LEQMNGVLLGGRNIKVGRPSNVPQA 146
>gi|303324711|pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
gi|303324712|pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 93/111 (83%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 84 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 143
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L
Sbjct: 144 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 194
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 15 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 74
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 75 MNSVMLGGRNIKVGR 89
>gi|160332383|sp|Q6IQE0.2|PU60B_DANRE RecName: Full=Poly(U)-binding-splicing factor PUF60-B
Length = 516
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRP ++ QAQ +I+++ EEA+ YNRIYVASIHPDL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKG+GFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 REPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTP 272
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 72 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAF 131
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EYE +A+ A+ MN LGG+ ++VGR
Sbjct: 132 VEYEVPEAAQLALEQMNSVMLGGRNIKVGR 161
>gi|371927697|pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 94/118 (79%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 83 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 142
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SS NLFDLGGQYLRVG+A+TPP L + P
Sbjct: 143 RDPTTGKHKGYGFIEYEKAQSSQDAVSSXNLFDLGGQYLRVGKAVTPPXPLLTPATPG 200
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK S +HKG+ F+EYE +A+ A+
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQ 73
Query: 94 MNLFDLGGQYLRVGR 108
N LGG+ ++VGR
Sbjct: 74 XNSVXLGGRNIKVGR 88
>gi|50344898|ref|NP_001002121.1| poly(U)-binding-splicing factor PUF60-B [Danio rerio]
gi|47940403|gb|AAH71467.1| Poly-U binding splicing factor b [Danio rerio]
Length = 502
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRP ++ QAQ +I+++ EEA+ YNRIYVASIHPDL+++DIKSVFEAFG IK C L
Sbjct: 139 NIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLA 198
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKG+GFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 199 REPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTP 255
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 130 MNSVMLGGRNIKVGR 144
>gi|260828249|ref|XP_002609076.1| hypothetical protein BRAFLDRAFT_60256 [Branchiostoma floridae]
gi|229294430|gb|EEN65086.1| hypothetical protein BRAFLDRAFT_60256 [Branchiostoma floridae]
Length = 495
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/109 (64%), Positives = 90/109 (82%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNM AQ ++D++ EEAK YNRIYV+S+HPDL +DIKSVFEAFG IK C+L
Sbjct: 140 NIKVGRPSNMASAQPIVDQLVEEAKHYNRIYVSSVHPDLAADDIKSVFEAFGKIKSCELA 199
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPN 114
+ +HKGYGF+EYE Q++ +AI+SMNLFDLGGQYLRVG+A+TPP
Sbjct: 200 PDAVTGKHKGYGFLEYEKPQSAQDAIASMNLFDLGGQYLRVGKAVTPPK 248
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L RIYV SI+ +L E+ +K F FGPIK L +HKGY FIEYE +A+ A
Sbjct: 68 LMCRIYVGSIYYELREDTLKQAFSPFGPIKNIDLSWDPLTMKHKGYAFIEYEIPEAAQLA 127
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 128 LEQMNGVMLGGRNIKVGR 145
>gi|169404577|pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
gi|169404578|pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 94/118 (79%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK L
Sbjct: 99 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLA 158
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 159 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 216
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ +R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 86
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 87 LEQMNSVMLGGRNIKVGR 104
>gi|198416925|ref|XP_002124386.1| PREDICTED: similar to poly-U binding splicing factor 60 [Ciona
intestinalis]
Length = 511
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 106/142 (74%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
++VGRPSN+ QAQ +ID++ E+ YNRIYVASIHPDL E D++SVF+AFG I C++ +
Sbjct: 164 IKVGRPSNIGQAQPIIDQLASESNNYNRIYVASIHPDLEESDLRSVFQAFGKILSCQMDR 223
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPST 126
RH+GY FIEYE KQ+ +A++SMN+FDLGGQYLRVG+AITPPN P
Sbjct: 224 DFVTRRHRGYAFIEYELKQSCQDAVASMNMFDLGGQYLRVGQAITPPNTHFDLVAPGAGN 283
Query: 127 SHMPTAAAVAAAAATAKIQAMD 148
S +P AAA+AAAAAT+KI A +
Sbjct: 284 STLPPAAALAAAAATSKIMAQE 305
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ D+ + ++ F FGPIK + +HKGY FI+YE +A++ A
Sbjct: 94 RVYVGSIYYDIAQSMVQEAFTPFGPIKSMDMSFDPITGKHKGYCFIDYEIPEAAHLAAEQ 153
Query: 94 MNLFDLGGQYLRVGR 108
M + LGG+ ++VGR
Sbjct: 154 MMIAQLGGRTIKVGR 168
>gi|449667931|ref|XP_002156035.2| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Hydra
magnipapillata]
Length = 597
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 103/143 (72%), Gaps = 7/143 (4%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+PQA I++I +EA+ Y RIYV+SIHPDL+E DIKSVFEAFG I CKL
Sbjct: 209 NIKVGRPSNVPQAAPWIEQILQEARQYARIYVSSIHPDLSESDIKSVFEAFGEILSCKLA 268
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+HKGYGFIEY + ++N+AI +MNLFDLGGQY+RVGRAITPP+ H+ K P
Sbjct: 269 PDQLTGKHKGYGFIEYANQSSANDAIVAMNLFDLGGQYIRVGRAITPPD--HALKQGPP- 325
Query: 126 TSHMPTAAAVAAAAATAKIQAMD 148
P A+ +AA +A IQ +
Sbjct: 326 ----PAASLLAANVISASIQGQE 344
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R Y+ SI+ L EE +++ F FGPIK L S+ +HKG+ F+EYE +A+ A
Sbjct: 137 LMCRTYIGSINFQLNEESVRASFLPFGPIKMIDLSWDSATMKHKGFAFVEYEIPEAAQLA 196
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 197 LEQMNNVLMGGRNIKVGRPSNVPQA 221
>gi|170595691|ref|XP_001902483.1| Rnp [Brugia malayi]
gi|158589826|gb|EDP28670.1| Rnp, putative [Brugia malayi]
Length = 636
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 94/114 (82%), Gaps = 3/114 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ +I+ + +EAK Y+R+YVAS+HPDL+E D+KSVFEAFG + C+L
Sbjct: 196 NLKVGRPSNMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDLKSVFEAFGEVTKCQLA 255
Query: 66 QGSSPHR---HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
+ + P+ H+G+G++E+ Q++NEAI+ MN+FDLGGQYLRVG+ ITPP+AL
Sbjct: 256 RATGPNAGSGHRGFGYLEFSNAQSANEAIAGMNMFDLGGQYLRVGKCITPPDAL 309
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+Y+ SI ++ EE IK+ F FGPIK + + HKG+ F+EYE +A+ A
Sbjct: 124 LMARVYIGSISFEVREEMIKNAFGVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLA 183
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
SMN +GG+ L+VGR P A
Sbjct: 184 QESMNGVLMGGRNLKVGRPSNMPQA 208
>gi|312086552|ref|XP_003145121.1| Poly(U)-binding-splicing factor half pint [Loa loa]
gi|393909311|gb|EJD75402.1| Poly(U)-binding-splicing factor half pint, variant [Loa loa]
Length = 765
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 94/114 (82%), Gaps = 3/114 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ +I+ + +EAK Y+R+YVAS+HPDL+E D+KSVFEAFG + C+L
Sbjct: 196 NLKVGRPSNMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDLKSVFEAFGEVTKCQLA 255
Query: 66 QGSSPHR---HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
+ + P+ H+G+G++E+ Q++NEAI+ MN+FDLGGQYLRVG+ ITPP+AL
Sbjct: 256 RATGPNAGSGHRGFGYLEFSNAQSANEAIAGMNMFDLGGQYLRVGKCITPPDAL 309
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+Y+ SI ++ EE IK+ F FGPIK + + HKG+ F+EYE +A+ A
Sbjct: 124 LMARVYIGSISFEVREEMIKNAFGVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLA 183
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
SMN +GG+ L+VGR P A
Sbjct: 184 QESMNGVLMGGRNLKVGRPSNMPQA 208
>gi|393909310|gb|EFO18950.2| Poly(U)-binding-splicing factor half pint [Loa loa]
Length = 769
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 93/114 (81%), Gaps = 3/114 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+V VGRPSNMPQAQ +I+ + +EAK Y+R+YVAS+HPDL+E D+KSVFEAFG + C+L
Sbjct: 200 NVLVGRPSNMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDLKSVFEAFGEVTKCQLA 259
Query: 66 QGSSPHR---HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
+ + P+ H+G+G++E+ Q++NEAI+ MN+FDLGGQYLRVG+ ITPP+AL
Sbjct: 260 RATGPNAGSGHRGFGYLEFSNAQSANEAIAGMNMFDLGGQYLRVGKCITPPDAL 313
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+Y+ SI ++ EE IK+ F FGPIK + + HKG+ F+EYE +A+ A
Sbjct: 124 LMARVYIGSISFEVREEMIKNAFGVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLA 183
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNAL 116
SMN +GG+ L+V + P+ +
Sbjct: 184 QESMNGVLMGGRNLKVNVLVGRPSNM 209
>gi|402580127|gb|EJW74077.1| hypothetical protein WUBG_15015 [Wuchereria bancrofti]
Length = 233
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 94/114 (82%), Gaps = 3/114 (2%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ +I+ + +EAK Y+R+YVAS+HPDL+E D+KSVFEAFG + C+L
Sbjct: 10 NLKVGRPSNMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDLKSVFEAFGEVTKCQLA 69
Query: 66 QGSSPHR---HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
+ + P+ H+G+G++E+ Q++NEAI+ MN+FDLGGQYLRVG+ ITPP+AL
Sbjct: 70 RATGPNAGSGHRGFGYLEFSNAQSANEAIAGMNMFDLGGQYLRVGKCITPPDAL 123
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 68 SSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNA 115
+SPH HKG+ F+EYE +A+ A SMN +GG+ L+VGR P A
Sbjct: 166 TSPH-HKGFAFLEYEIPEAALLAQESMNGVLMGGRNLKVGRPSNMPQA 212
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 26/30 (86%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI 35
+++VGRPSNMPQAQ +I+ + +EAK Y+R+
Sbjct: 200 NLKVGRPSNMPQAQPIIEMVMQEAKAYHRL 229
>gi|196009954|ref|XP_002114842.1| hypothetical protein TRIADDRAFT_64128 [Trichoplax adhaerens]
gi|190582904|gb|EDV22976.1| hypothetical protein TRIADDRAFT_64128 [Trichoplax adhaerens]
Length = 620
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 113/168 (67%), Gaps = 21/168 (12%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRP+ MPQA +I +I EEAK Y RIYVAS+HPDL+E DIKSVFEAFG IK C +
Sbjct: 236 NIKVGRPTQMPQAGPLIQQIEEEAKNYARIYVASVHPDLSESDIKSVFEAFGKIKSCTMP 295
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ +H+GY +IE + Q++ +AI+SMN+FDLGGQYLRVGRA+TPP A P+
Sbjct: 296 LDNITGKHRGYCYIELDGLQSAMDAIASMNMFDLGGQYLRVGRAVTPPTATAQ-----PN 350
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGG--------------ATNAVGVLS 159
T AAA+AAAA +AKIQ+ D G ATN VGV S
Sbjct: 351 TLP--PAAALAAAAVSAKIQSQDTGISIPTATLAANPLIATNLVGVTS 396
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 50/85 (58%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L RIYV SI DL E+ IK F FGPIK L + +HKG+ FIE+ET +A+ A
Sbjct: 164 LMCRIYVGSISFDLREDHIKQTFSPFGPIKNINLSWDTVTMKHKGFAFIEFETPEAAQLA 223
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 224 LEQMNGQLMGGRNIKVGRPTQMPQA 248
>gi|339244819|ref|XP_003378335.1| poly(U)-binding-splicing factor half pint [Trichinella spiralis]
gi|316972769|gb|EFV56420.1| poly(U)-binding-splicing factor half pint [Trichinella spiralis]
Length = 609
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 91/110 (82%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ +I+ I EEAKL++RIYV+SIHPDLTE D+KSVFEAFG I L
Sbjct: 187 NIKVGRPSNMPQAQPIIESIIEEAKLHHRIYVSSIHPDLTESDVKSVFEAFGNIINVDLP 246
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNA 115
+G +HKGY +I++++ +A+ +A+SSMN+FDLGGQ LRVGRAITPP A
Sbjct: 247 KGQLHGKHKGYAYIDFDSAKAALDAVSSMNMFDLGGQLLRVGRAITPPMA 296
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 43 DLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQ 102
+L EE +K F+ FGPIK + HKG+ F+EYE +A+ A MN +GG+
Sbjct: 127 ELREETVKGAFQVFGPIKSINMSWDPITGHHKGFAFLEYEVPEAATLAQDQMNGVLIGGR 186
Query: 103 YLRVGRAITPPNA 115
++VGR P A
Sbjct: 187 NIKVGRPSNMPQA 199
>gi|390345175|ref|XP_785572.2| PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform 2
[Strongylocentrotus purpuratus]
Length = 574
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/146 (61%), Positives = 110/146 (75%), Gaps = 8/146 (5%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ V+D I EEAK RI++ SIH DL+ EDIKSVFEAFG I C L
Sbjct: 181 NIKVGRPSNMPQAQPVVDAIMEEAKHQPRIFITSIHSDLSSEDIKSVFEAFGKIISCSLP 240
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
S +HKG+G IEY++ Q++++AISSMNLFDLGGQ+LRVGRAITP S+ P+
Sbjct: 241 SDSVGGKHKGHGIIEYDSMQSASDAISSMNLFDLGGQFLRVGRAITP-----STMTGFPT 295
Query: 126 T---SHMPTAAAVAAAAATAKIQAMD 148
S +P AAAVAAAAATAKIQA+D
Sbjct: 296 ILGGSGLPPAAAVAAAAATAKIQALD 321
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EY+ +A+ A
Sbjct: 109 LMCRVYVGSISFELKEDTIRQAFHPFGPIKSINMSWDPITMKHKGFAFVEYDLPEAAQLA 168
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 169 LEQMNGVMIGGRNIKVGRPSNMPQA 193
>gi|390345173|ref|XP_003726279.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform 1
[Strongylocentrotus purpuratus]
Length = 601
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/146 (61%), Positives = 110/146 (75%), Gaps = 8/146 (5%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ V+D I EEAK RI++ SIH DL+ EDIKSVFEAFG I C L
Sbjct: 224 NIKVGRPSNMPQAQPVVDAIMEEAKHQPRIFITSIHSDLSSEDIKSVFEAFGKIISCSLP 283
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
S +HKG+G IEY++ Q++++AISSMNLFDLGGQ+LRVGRAITP S+ P+
Sbjct: 284 SDSVGGKHKGHGIIEYDSMQSASDAISSMNLFDLGGQFLRVGRAITP-----STMTGFPT 338
Query: 126 T---SHMPTAAAVAAAAATAKIQAMD 148
S +P AAAVAAAAATAKIQA+D
Sbjct: 339 ILGGSGLPPAAAVAAAAATAKIQALD 364
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EY+ +A+ A
Sbjct: 152 LMCRVYVGSISFELKEDTIRQAFHPFGPIKSINMSWDPITMKHKGFAFVEYDLPEAAQLA 211
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 212 LEQMNGVMIGGRNIKVGRPSNMPQA 236
>gi|391343712|ref|XP_003746150.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Metaseiulus
occidentalis]
Length = 562
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 115/149 (77%), Gaps = 6/149 (4%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQA ++++I EE+K RIY+ASIH DL++ D+ SVFEAFG IK CKL
Sbjct: 189 NIKVGRPSNMPQAAPILEQIMEESKSSPRIYIASIHQDLSDADVHSVFEAFGKIKSCKLA 248
Query: 66 QG-SSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKG--- 121
G ++ +H+ +GFIEYET QA+ +AI+SMN+FDLGGQ +RVGRAITPP+ ++ G
Sbjct: 249 PGMTAAEKHREFGFIEYETSQAAADAIASMNMFDLGGQLVRVGRAITPPDCALNTHGVLM 308
Query: 122 -PAPS-TSHMPTAAAVAAAAATAKIQAMD 148
AP +PTAAAVAAAAATAKIQAM+
Sbjct: 309 PAAPGIVGPLPTAAAVAAAAATAKIQAME 337
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L RIYV SI +L E+ +++ F+ FGP+K + + RHKG+ F+E+E +A+ A
Sbjct: 117 LMCRIYVGSISFELKEDAVRTAFKPFGPVKAINMSYDTITSRHKGFAFVEFELPEAAQLA 176
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 177 LEQMNGVFMGGRNIKVGRPSNMPQA 201
>gi|17510027|ref|NP_491177.1| Protein RNP-6, isoform a [Caenorhabditis elegans]
gi|373220164|emb|CCD72564.1| Protein RNP-6, isoform a [Caenorhabditis elegans]
Length = 339
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 99/133 (74%), Gaps = 2/133 (1%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
P NMPQAQ +ID + ++AK Y R+YV+S+HPDL+E D+KSVFEAFG I C+L + +
Sbjct: 186 PQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGR 245
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPT 131
H+G+G++E+ + +EAI+ MN+FDLGGQYLRVG+ +TPP+AL + PA S S +P
Sbjct: 246 GHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKCVTPPDALTYLQ-PA-SVSAIPA 303
Query: 132 AAAVAAAAATAKI 144
+ +VA AA TAK+
Sbjct: 304 SVSVACAAITAKV 316
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ +RIYV SI ++ E+ ++ F+ FGPIK + + HK + F+EYE +A+ A
Sbjct: 100 IMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLA 159
Query: 91 ISSMNLFDLGGQYLRV 106
SMN LGG+ L+V
Sbjct: 160 QESMNGQMLGGRNLKV 175
>gi|17510025|ref|NP_491176.1| Protein RNP-6, isoform b [Caenorhabditis elegans]
gi|373220165|emb|CCD72565.1| Protein RNP-6, isoform b [Caenorhabditis elegans]
Length = 749
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 99/133 (74%), Gaps = 2/133 (1%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
P NMPQAQ +ID + ++AK Y R+YV+S+HPDL+E D+KSVFEAFG I C+L + +
Sbjct: 186 PQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGR 245
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPT 131
H+G+G++E+ + +EAI+ MN+FDLGGQYLRVG+ +TPP+AL + PA S S +P
Sbjct: 246 GHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKCVTPPDALTYLQ-PA-SVSAIPA 303
Query: 132 AAAVAAAAATAKI 144
+ +VA AA TAK+
Sbjct: 304 SVSVACAAITAKV 316
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ +RIYV SI ++ E+ ++ F+ FGPIK + + HK + F+EYE +A+ A
Sbjct: 100 IMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLA 159
Query: 91 ISSMNLFDLGGQYLRV 106
SMN LGG+ L+V
Sbjct: 160 QESMNGQMLGGRNLKV 175
>gi|308505212|ref|XP_003114789.1| CRE-RNP-6 protein [Caenorhabditis remanei]
gi|308258971|gb|EFP02924.1| CRE-RNP-6 protein [Caenorhabditis remanei]
Length = 817
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 97/133 (72%), Gaps = 2/133 (1%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
P NMPQAQ +ID + ++AK Y R+YVAS+HPDL+E ++ VFEAFG I C+L + +
Sbjct: 231 PQNMPQAQPIIDMVQKDAKKYFRVYVASVHPDLSESELGGVFEAFGQIIKCQLARTPTGR 290
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPT 131
H+G+G+IE+ + NEAI+ MN+FDLGGQYLRVG+ +TPP+AL S PA + S +P
Sbjct: 291 GHRGFGYIEFNNVNSQNEAIAGMNMFDLGGQYLRVGKCVTPPDAL-SYLQPA-AVSAIPA 348
Query: 132 AAAVAAAAATAKI 144
+ +VA AA TAK+
Sbjct: 349 SVSVACAAITAKV 361
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG---------------SSPHRHKG 75
+ +RIYV SI ++ E+ ++ F+ FGPIK + SS HK
Sbjct: 130 IMSRIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGVSCDRCLNISISSFQHHKT 189
Query: 76 YGFIEYETKQASNEAISSMNLFDLGGQYLRV 106
+ F+EYE +A+ A SMN LGG+ L+V
Sbjct: 190 FAFVEYEIPEAALLAQESMNGQMLGGRNLKV 220
>gi|341895702|gb|EGT51637.1| CBN-RNP-6 protein [Caenorhabditis brenneri]
Length = 757
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 97/133 (72%), Gaps = 2/133 (1%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
P NMPQAQ +ID + ++AK Y R+YVAS+HPDL+E ++ VFEAFG I C+L + +
Sbjct: 186 PQNMPQAQPIIDMVQKDAKKYFRVYVASVHPDLSESELAGVFEAFGQIIKCQLARTPTGR 245
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPT 131
H+G+G+IE+ + NEAI+ MN+FDLGGQYLRVG+ +TPP+AL S PA + S +P
Sbjct: 246 GHRGFGYIEFNNVTSQNEAIAGMNMFDLGGQYLRVGKCVTPPDAL-SYLQPA-AVSAIPA 303
Query: 132 AAAVAAAAATAKI 144
+ +VA AA TAK+
Sbjct: 304 SVSVACAAITAKV 316
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ +RIYV SI ++ E+ ++ F+ FGPIK + + HK + F+EYE +A+ A
Sbjct: 100 IMSRIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGHHKTFAFVEYEIPEAALLA 159
Query: 91 ISSMNLFDLGGQYLRV 106
SMN LGG+ L+V
Sbjct: 160 QESMNGQMLGGRNLKV 175
>gi|341882558|gb|EGT38493.1| hypothetical protein CAEBREN_09163 [Caenorhabditis brenneri]
Length = 757
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 97/133 (72%), Gaps = 2/133 (1%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
P NMPQAQ +ID + ++AK Y R+YVAS+HPDL+E ++ VFEAFG I C+L + +
Sbjct: 186 PQNMPQAQPIIDMVQKDAKKYFRVYVASVHPDLSESELAGVFEAFGQIIKCQLARTPTGR 245
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPT 131
H+G+G+IE+ + NEAI+ MN+FDLGGQYLRVG+ +TPP+AL S PA + S +P
Sbjct: 246 GHRGFGYIEFNNVTSQNEAIAGMNMFDLGGQYLRVGKCVTPPDAL-SYLQPA-AVSAIPA 303
Query: 132 AAAVAAAAATAKI 144
+ +VA AA TAK+
Sbjct: 304 SVSVACAAITAKV 316
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ +RIYV SI ++ E+ ++ F+ FGPIK + + HK + F+EYE +A+ A
Sbjct: 100 IMSRIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGHHKTFAFVEYEIPEAALLA 159
Query: 91 ISSMNLFDLGGQYLRV 106
SMN LGG+ L+V
Sbjct: 160 QESMNGQMLGGRNLKV 175
>gi|268564468|ref|XP_002639117.1| C. briggsae CBR-RNP-6 protein [Caenorhabditis briggsae]
Length = 744
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 97/133 (72%), Gaps = 2/133 (1%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
P NMPQAQ +ID + ++AK Y R+YVAS+HPDL+E ++ VFEAFG I C+L + +
Sbjct: 186 PQNMPQAQPIIDMVQKDAKKYFRVYVASVHPDLSESELAGVFEAFGQIIKCQLARTPTGR 245
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPT 131
H+G+G+IE+ + NEAI+ MN+FDLGGQYLRVG+ +TPP+AL S PA T+ +P
Sbjct: 246 GHRGFGYIEFNNMNSQNEAIAGMNMFDLGGQYLRVGKCVTPPDAL-SYLQPAAVTA-IPA 303
Query: 132 AAAVAAAAATAKI 144
+ +VA AA TAK+
Sbjct: 304 SVSVACAAITAKV 316
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ +RIYV SI ++ E+ ++ F+ FGPIK + + HK + F+EYE +A+ A
Sbjct: 100 IMSRIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGHHKTFAFVEYEIPEAALLA 159
Query: 91 ISSMNLFDLGGQYLRV 106
SMN LGG+ L+V
Sbjct: 160 QESMNGQMLGGRNLKV 175
>gi|324503561|gb|ADY41546.1| Poly(U)-binding-splicing factor half pint [Ascaris suum]
Length = 832
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+V VGRPSNMPQAQ +I+ + +EAK Y+R+YVAS+HPDL+E D+KSVFEAFG + C+L
Sbjct: 228 NVLVGRPSNMPQAQPIIEMVMQEAKAYHRVYVASVHPDLSESDLKSVFEAFGEVTKCQLA 287
Query: 66 QGSSPHR---HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + P+ H+G+G+IE+ ++ EAI+ MN+FDLGGQYLRVG+ ITPP+AL
Sbjct: 288 RATGPNAGSGHRGFGYIEFGNAASAAEAIAGMNMFDLGGQYLRVGKCITPPDALTYI--- 344
Query: 123 APSTS-HMPTAAAVAAAAATAKIQAMD 148
P++S ++PTAAAVAAA TAKIQA +
Sbjct: 345 VPTSSINLPTAAAVAAAEVTAKIQAQE 371
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+Y+ SI ++ EE IK+ F FGPIK + + HKG+ F+EYE +A+ A
Sbjct: 152 LMARVYIGSISFEVREEMIKNSFSVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLA 211
Query: 91 ISSMNLFDLGGQYLRV 106
SMN +GG+ L+V
Sbjct: 212 QESMNGVLMGGRNLKV 227
>gi|353229125|emb|CCD75296.1| putative fuse-binding protein-interacting repressor siahbp1
[Schistosoma mansoni]
Length = 520
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 110/144 (76%), Gaps = 6/144 (4%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
++VGRPSN+ A+ VI+E+ E L+NRIYVA IH DLTE+D+ VFEAFG I +CKLQ
Sbjct: 165 QLKVGRPSNLTNAEPVINELVNEHNLHNRIYVAGIHLDLTEDDVSLVFEAFGKIVFCKLQ 224
Query: 66 -QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAP 124
+ P RH+G+G+IEYE+ Q++ +A+ SMN F+LGGQ LRV +AI+PP+ + S+
Sbjct: 225 PDPTRPMRHRGFGYIEYESTQSAADAVGSMNQFNLGGQLLRVCKAISPPDGISSA----- 279
Query: 125 STSHMPTAAAVAAAAATAKIQAMD 148
S+S++P AAAVAAA+ATAK+ +M+
Sbjct: 280 SSSNLPPAAAVAAASATAKVLSME 303
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 50/85 (58%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L NR+YV SI D+ E+ +K VF FGPIK L S +HKG+ F+E+E +A+ A
Sbjct: 93 LLNRVYVGSIAYDVKEDSLKQVFSPFGPIKSVNLSWDPSTQKHKGFAFLEFEYPEAAQLA 152
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
I MN GG+ L+VGR NA
Sbjct: 153 IDQMNGTSFGGRQLKVGRPSNLTNA 177
>gi|256072869|ref|XP_002572756.1| fuse-binding protein-interacting repressor siahbp1 [Schistosoma
mansoni]
Length = 520
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 110/144 (76%), Gaps = 6/144 (4%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
++VGRPSN+ A+ VI+E+ E L+NRIYVA IH DLTE+D+ VFEAFG I +CKLQ
Sbjct: 165 QLKVGRPSNLTNAEPVINELVNEHNLHNRIYVAGIHLDLTEDDVSLVFEAFGKIVFCKLQ 224
Query: 66 -QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAP 124
+ P RH+G+G+IEYE+ Q++ +A+ SMN F+LGGQ LRV +AI+PP+ + S+
Sbjct: 225 PDPTRPMRHRGFGYIEYESTQSAADAVGSMNQFNLGGQLLRVCKAISPPDGISSA----- 279
Query: 125 STSHMPTAAAVAAAAATAKIQAMD 148
S+S++P AAAVAAA+ATAK+ +M+
Sbjct: 280 SSSNLPPAAAVAAASATAKVLSME 303
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 50/85 (58%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L NR+YV SI D+ E+ +K VF FGPIK L S +HKG+ F+E+E +A+ A
Sbjct: 93 LLNRVYVGSIAYDVKEDSLKQVFSPFGPIKSVNLSWDPSTQKHKGFAFLEFEYPEAAQLA 152
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
I MN GG+ L+VGR NA
Sbjct: 153 IDQMNGTSFGGRQLKVGRPSNLTNA 177
>gi|198424504|ref|XP_002131946.1| PREDICTED: similar to poly-U binding splicing factor 60KDa [Ciona
intestinalis]
Length = 491
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 83/106 (78%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
++VGRP+NMPQ+ VID + +E+K+ RIY++S+H DL ED+KSVF AFG I C L
Sbjct: 169 IKVGRPANMPQSHPVIDLLLDESKMQKRIYISSVHTDLNTEDLKSVFSAFGNILSCALVP 228
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+HKGYGFIEY+T QA+N+A++SMNLFDLGGQYLRVG+AI P
Sbjct: 229 DVLTGKHKGYGFIEYDTLQAANDAVASMNLFDLGGQYLRVGKAIAP 274
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI+ DL EE I++ F FGP K + +HKG+ FIEYET +A+ +
Sbjct: 96 LMCRVYVGSIYYDLKEEIIRNAFSPFGPFKSINMSFDPITGKHKGFAFIEYETPEAAQLS 155
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ M LGG+ ++VGR P +
Sbjct: 156 LDQMGGVMLGGRSIKVGRPANMPQS 180
>gi|358335955|dbj|GAA54545.1| poly(U)-binding-splicing factor PUF60 [Clonorchis sinensis]
Length = 511
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 87/109 (79%), Gaps = 1/109 (0%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
++VGRPSN+PQA +I+E+ E KL ++YVA +HPDL+E+D+ VFEAFG I CKL
Sbjct: 146 QLKVGRPSNLPQADPLINELVTEYKLEKKVYVAGVHPDLSEDDLALVFEAFGKITSCKLH 205
Query: 66 -QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPP 113
+ +H+G+G+IEYE++QA+N+A++SMN+FDLGGQ+LRVG+AI PP
Sbjct: 206 VDPTKAQKHRGFGYIEYESEQAANDAVASMNMFDLGGQFLRVGKAIAPP 254
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L +RIYV SI DL E+ IK+ F+ FGPI+ + ++ +HKG+ FIE+E +A++ A
Sbjct: 74 LLSRIYVGSISYDLKEDSIKTAFQPFGPIRTVTMSWDAATQKHKGFAFIEFEFPEAAHLA 133
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN LGG+ L+VGR P A
Sbjct: 134 VEQMNNASLGGRQLKVGRPSNLPQA 158
>gi|449279837|gb|EMC87291.1| Poly(U)-binding-splicing factor PUF60, partial [Columba livia]
Length = 513
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 80/96 (83%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 162 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 221
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG 101
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGG
Sbjct: 222 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 257
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 152
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 153 MNSVMLGGRNIKVGR 167
>gi|340384945|ref|XP_003390971.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like, partial
[Amphimedon queenslandica]
Length = 342
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 82/104 (78%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRP+N+PQA +I I E A RIYVASIH DL+ +D+KSVFEAFG IK +L
Sbjct: 164 NIKVGRPNNVPQAAPIIASIQESAAKLPRIYVASIHKDLSAKDVKSVFEAFGKIKKVELA 223
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
++P +H+G+GFI+YE +++ +AISSMNLFDLGGQ+LRVGRA
Sbjct: 224 PDTAPGKHRGWGFIDYENHKSAADAISSMNLFDLGGQFLRVGRA 267
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L +RIY+ SI+ +L EE ++ F FG IK + S+ +HKGY F+E+ET +A+ A
Sbjct: 92 LMSRIYIGSINFELGEEAVRVAFSPFGTIKTINMSWDSATMKHKGYAFVEFETAEAAQLA 151
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ M +GG+ ++VGR P A
Sbjct: 152 LEQMTGVIIGGRNIKVGRPNNVPQA 176
>gi|226467496|emb|CAX69624.1| Poly U-binding-splicing factor half pint [Schistosoma japonicum]
Length = 411
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 101/148 (68%), Gaps = 6/148 (4%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN PQ ++ E+ E+ R+Y+AS+HP+LTE DI++VFEAFG + C L
Sbjct: 163 NLKVGRPSNAPQTAALEAELRAESSTKPRVYIASVHPELTESDIQTVFEAFGKVNSCSLY 222
Query: 66 -QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP-----PNALHSS 119
P RH+G+G+I++E+++A+ A+SSMN FDL GQ LRVGRAITP P L+++
Sbjct: 223 PDPKCPGRHRGFGYIDFESEEAAIAAVSSMNCFDLAGQQLRVGRAITPKGVPLPFELNAN 282
Query: 120 KGPAPSTSHMPTAAAVAAAAATAKIQAM 147
KG +++ + +AVA AAA+ + M
Sbjct: 283 KGLNTISTNPVSTSAVAFAAASISAKVM 310
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L +RIYV SI ++ EE+I+ F FGPIK L + +HKG+ F+E+E +A++ A
Sbjct: 91 LLSRIYVGSISFEIGEEEIRKTFSPFGPIKSVALSWDTVLQKHKGFAFVEFEVPEAASLA 150
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN + L G+ L+VGR P NA
Sbjct: 151 LEQMNGYTLAGRNLKVGR---PSNA 172
>gi|358334696|dbj|GAA40294.2| poly(U)-binding-splicing factor PUF60, partial [Clonorchis
sinensis]
Length = 519
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL- 64
++VGRPSN+ A +VI E+ E KL NRIYV+ IH DLTE+DI VFEAFG I +C+L
Sbjct: 169 QLKVGRPSNLTNADTVIAELVAEYKLENRIYVSGIHVDLTEDDISLVFEAFGKIVFCRLV 228
Query: 65 QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
S RH+G+G+IEY+ Q++ +A++SMN F+LGGQ LRV +AI+PP +
Sbjct: 229 VDPESTERHRGFGYIEYQNSQSAADAVASMNQFNLGGQLLRVCKAISPPEGI 280
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L NR+YV SI D+ E+ +K F FGP+K + + +HKG+ F+E+E +A+ A
Sbjct: 97 LLNRVYVGSIAYDVKEDSLKQSFSPFGPLKTVSMSWDPATQKHKGFAFLEFEYPEAAQLA 156
Query: 91 ISSMNLFDLGGQYLRVGR 108
I MN GG+ L+VGR
Sbjct: 157 IDQMNNASFGGRQLKVGR 174
>gi|256073105|ref|XP_002572873.1| fuse-binding protein-interacting repressor siahbp1 [Schistosoma
mansoni]
Length = 534
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 98/148 (66%), Gaps = 6/148 (4%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN PQ ++ E+ E R+Y+AS+HP+LTE DI++VFEAFG + C L
Sbjct: 175 NLKVGRPSNAPQTAALEAELRAEVSTKPRVYIASVHPELTESDIQTVFEAFGKVNSCSLY 234
Query: 66 -QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP-----PNALHSS 119
RH+G+G+I++E+++A+ A+SSMN FDL GQ LRVGRA+TP P L+++
Sbjct: 235 PDPKCSGRHRGFGYIDFESEEAAIAAVSSMNCFDLAGQQLRVGRALTPKGVPLPFELNAN 294
Query: 120 KGPAPSTSHMPTAAAVAAAAATAKIQAM 147
K +++ + +AVA AAA+ + M
Sbjct: 295 KSLNTISTNPISTSAVAFAAASISAKVM 322
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L +RIYV SI ++ EE+I+ F FGPIK L + +HKG+ F+E+E +A++ A
Sbjct: 103 LLSRIYVGSISFEIGEEEIRKTFSPFGPIKSVALSWDTVLQKHKGFAFVEFEVPEAASLA 162
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN + L G+ L+VGR P NA
Sbjct: 163 LDQMNGYTLAGRNLKVGR---PSNA 184
>gi|350646433|emb|CCD58930.1| fuse-binding protein-interacting repressor siahbp1, putative
[Schistosoma mansoni]
Length = 522
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 98/148 (66%), Gaps = 6/148 (4%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN PQ ++ E+ E R+Y+AS+HP+LTE DI++VFEAFG + C L
Sbjct: 163 NLKVGRPSNAPQTAALEAELRAEVSTKPRVYIASVHPELTESDIQTVFEAFGKVNSCSLY 222
Query: 66 -QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP-----PNALHSS 119
RH+G+G+I++E+++A+ A+SSMN FDL GQ LRVGRA+TP P L+++
Sbjct: 223 PDPKCSGRHRGFGYIDFESEEAAIAAVSSMNCFDLAGQQLRVGRALTPKGVPLPFELNAN 282
Query: 120 KGPAPSTSHMPTAAAVAAAAATAKIQAM 147
K +++ + +AVA AAA+ + M
Sbjct: 283 KSLNTISTNPISTSAVAFAAASISAKVM 310
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L +RIYV SI ++ EE+I+ F FGPIK L + +HKG+ F+E+E +A++ A
Sbjct: 91 LLSRIYVGSISFEIGEEEIRKTFSPFGPIKSVALSWDTVLQKHKGFAFVEFEVPEAASLA 150
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN + L G+ L+VGR P NA
Sbjct: 151 LDQMNGYTLAGRNLKVGR---PSNA 172
>gi|25141353|ref|NP_740829.1| Protein RNP-6, isoform c [Caenorhabditis elegans]
gi|373220166|emb|CCD72566.1| Protein RNP-6, isoform c [Caenorhabditis elegans]
Length = 346
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 72/94 (76%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
P NMPQAQ +ID + ++AK Y R+YV+S+HPDL+E D+KSVFEAFG I C+L + +
Sbjct: 186 PQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGR 245
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105
H+G+G++E+ + +EAI+ MN+FDLGGQYLR
Sbjct: 246 GHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLR 279
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ +RIYV SI ++ E+ ++ F+ FGPIK + + HK + F+EYE +A+ A
Sbjct: 100 IMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLA 159
Query: 91 ISSMNLFDLGGQYLRV 106
SMN LGG+ L+V
Sbjct: 160 QESMNGQMLGGRNLKV 175
>gi|313228939|emb|CBY18091.1| unnamed protein product [Oikopleura dioica]
Length = 505
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL-Q 65
V+VGR SNM A+ I + +EA YNRIYVAS+H +L+++DI++VFEAFG + C L +
Sbjct: 198 VKVGRTSNMGMAEHFISQFAQEAARYNRIYVASVHENLSDDDIRAVFEAFGRVVSCSLVR 257
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPN 114
S P H GYG+IE+E ++ +EA+ +M+ +DLGG+ LRV + PP+
Sbjct: 258 DVSEPETHCGYGYIEFENPESMDEAVKAMDQYDLGGKMLRVCACVVPPS 306
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L RIYV +++ ++ E +K+ FE FGP++ + + RHKG+ F+E+ET +A++ A
Sbjct: 125 LMCRIYVGAVNYEVGEATVKTSFETFGPVRSVDMIYDINTGRHKGFAFVEFETPEAAHLA 184
Query: 91 ISSMNLFDLGGQYLRVGR 108
M +GG+ ++VGR
Sbjct: 185 CEDMQGATVGGRSVKVGR 202
>gi|313244755|emb|CBY15469.1| unnamed protein product [Oikopleura dioica]
Length = 2588
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 86/139 (61%), Gaps = 3/139 (2%)
Query: 7 VQVGRPSNMPQ--AQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL 64
V+VGR SN+ Q AQ I + EA Y+R+Y+A+IH ++ + DIK+VFE+FG + C+L
Sbjct: 2290 VKVGRLSNIGQVAAQHFIAQFGNEAAKYHRVYIANIHVNIVDTDIKAVFESFGRVLSCQL 2349
Query: 65 QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAP 124
+ RHK YGF+EY+ Q+ EAIS+MN FDLGGQ +RVG + PP ++H+ AP
Sbjct: 2350 VKNVDTGRHKNYGFVEYDNSQSMKEAISAMNGFDLGGQCIRVGPCVVPP-SMHNIPTVAP 2408
Query: 125 STSHMPTAAAVAAAAATAK 143
+ + A A K
Sbjct: 2409 GNASTALSGAKAVQEMLKK 2427
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+IYV SI+ ++ E I+ FE FGP++ + +RHKG+ F+E+E +A+ A+
Sbjct: 2220 KIYVGSIYYEIGEATIRQSFETFGPVRSIDMSYDQGTNRHKGFCFLEFECPEAAFLALEH 2279
Query: 94 MNLFDLGGQYLRVGR 108
M +GG+ ++VGR
Sbjct: 2280 MQSITIGGRAVKVGR 2294
>gi|358339509|dbj|GAA27913.2| poly(U)-binding-splicing factor PUF60-B [Clonorchis sinensis]
Length = 512
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ- 65
++VGRPSN PQ ++ E+ + R+YVAS+HP+LTE D+++VFEAFG ++ C L
Sbjct: 163 LKVGRPSNAPQTGNLESELRSDENTRCRVYVASVHPELTEADMQTVFEAFGKVEECLLYP 222
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
P RH+G+G+I + +++ + A++SMN FDL G LRV RAITP
Sbjct: 223 DPKCPGRHRGFGYIYFHSEEEAIAAVTSMNGFDLAGLQLRVCRAITP 269
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L +RIYV SI ++ E++++ F FGPIK L ++ +HKG+ F+E+E +A++ A
Sbjct: 90 LLSRIYVGSISFEVGEDELRRTFGPFGPIKSVALSWDATLQKHKGFAFVEFEVPEAASLA 149
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN L G+ L+VGR P NA
Sbjct: 150 LEQMNGHTLAGRTLKVGR---PSNA 171
>gi|167517167|ref|XP_001742924.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778023|gb|EDQ91638.1| predicted protein [Monosiga brevicollis MX1]
Length = 231
Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
+++GRP+N PQA ++ + +A +RIYV+SIHPDL E +IKSVFE+FGP+ L
Sbjct: 90 LKIGRPNNAPQALPYLETLAAKAAEAHRIYVSSIHPDLGELEIKSVFESFGPVTRVILAP 149
Query: 67 GSSPH-RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110
G+ H+GYG++++E +++ +AI SMNLFDLGGQ+LRV I
Sbjct: 150 GAEGKGNHRGYGWVDFEEQKSVPDAIKSMNLFDLGGQFLRVSIGI 194
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNE 89
+L R+YV I D E++I F FG I+ C + ++HKG+ F+EY+ +A+
Sbjct: 16 QLLGRVYVGGIPFDAGEQEIAEAFRPFGAIQQCAFTYDQALNKHKGFCFVEYDAPEAALL 75
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNAL 116
A+ M +++ G+ L++GR P AL
Sbjct: 76 ALEQMTSYNIKGRTLKIGRPNNAPQAL 102
>gi|440797518|gb|ELR18604.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 696
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 66/100 (66%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
P M + + + +A NRIYV SIH DLT +DIK+VFEAFG +K C L
Sbjct: 390 PEMMQEFTKLTGKTAADATASNRIYVGSIHWDLTSDDIKTVFEAFGTVKSCVLMPNPETG 449
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
+HKGYGF+EYE +++ EAI MN +DLGG+ ++VGRAI+
Sbjct: 450 KHKGYGFVEYEESKSAEEAIQQMNGWDLGGRPIKVGRAIS 489
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNE 89
+L RIYV S++ +L+EEDIK+ F FGP+K L + R KG+ F+EY A+
Sbjct: 248 QLACRIYVGSLNFELSEEDIKTAFSPFGPVKSVSLTKDPLTQRSKGFAFVEYAYPDAATA 307
Query: 90 AISSMNLFDLGGQYLRVGRAITP 112
A+ MN F L G+ L+VGR TP
Sbjct: 308 ALKHMNGFMLAGRQLKVGRPHTP 330
>gi|224156534|ref|XP_002199861.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like, partial
[Taeniopygia guttata]
Length = 156
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 61/74 (82%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 83 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 142
Query: 66 QGSSPHRHKGYGFI 79
+ + +HKGYGFI
Sbjct: 143 RDPTTGKHKGYGFI 156
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 73
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 74 MNSVMLGGRNIKVGR 88
>gi|345315810|ref|XP_001511498.2| PREDICTED: poly(U)-binding-splicing factor PUF60-like
[Ornithorhynchus anatinus]
Length = 499
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 170 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 229
Query: 66 QGSSPHRHKG 75
+ + +HKG
Sbjct: 230 RDPTTGKHKG 239
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 161 MNSVMLGGRNIKVGR 175
>gi|320165239|gb|EFW42138.1| hypothetical protein CAOG_07523 [Capsaspora owczarzaki ATCC 30864]
Length = 598
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 6 HVQVGRPSNMPQ-AQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL 64
++ G P N PQ Q +I+E+ +E + ++VA+IHP+L+E DI+ VF++FGP+ YC L
Sbjct: 281 QLKFGTP-NAPQPMQVLIEELRKEGSTFPHVFVANIHPELSESDIREVFQSFGPVAYCIL 339
Query: 65 QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALH 117
RHKG G++++E+ Q + +AI+++N DLGG L V + P+ +
Sbjct: 340 MVDLVTGRHKGCGYVQFESLQTAKDAIAALNRLDLGGLLLHVVKGAHSPSNIQ 392
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCK-LQQGSSPHRHKGYGFIEYETK 84
T L R+YV SI + E ++++ GPI+ + +P RHKG+GF+EYE
Sbjct: 203 TRAITLIGRVYVGSIPFEAGEREVRAAMSECGPIRSVSFVNDPVAPTRHKGFGFVEYEYP 262
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITPPNA 115
++ + +S M+ +G + L+ G PNA
Sbjct: 263 ESGDIVLSQMHHARIGDRQLKFG----TPNA 289
>gi|320165216|gb|EFW42115.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 570
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 6 HVQVGRPSNMPQ-AQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL 64
++ G P N PQ Q +I+E+ +E + ++VA+IHP+L+E DI+ VF++FGP+ YC L
Sbjct: 268 QLKFGTP-NAPQPMQVLIEELRKEGSTFPHVFVANIHPELSESDIREVFQSFGPVAYCIL 326
Query: 65 QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALH 117
RHKG G++++E+ Q + +AI+++N DLGG L V + P+ +
Sbjct: 327 MVDLVTGRHKGCGYVQFESLQTAKDAIAALNRLDLGGLLLHVVKGAHSPSNIQ 379
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCK-LQQGSSPHRHKGYGFIEYETK 84
T L R+YV SI + E ++++ GPI+ + +P RHKG+GF+EYE
Sbjct: 190 TRAITLIGRVYVGSIPFEAGEREVRAAMSECGPIRSVSFVNDPVAPTRHKGFGFVEYEYP 249
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITPPNA 115
++ + +S M+ +G + L+ G PNA
Sbjct: 250 ESGDIVLSQMHHARIGDRQLKFG----TPNA 276
>gi|326427574|gb|EGD73144.1| hypothetical protein PTSG_04857 [Salpingoeca sp. ATCC 50818]
Length = 2295
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
++ +GRP+N +A ++ + + A NRIYV S+H DL+++DIK+VFE FG I+ ++
Sbjct: 1967 NIILGRPNNSDRAMEFLEPLAQAAAEANRIYVTSLHADLSQDDIKTVFEGFGAIRSIEVM 2026
Query: 66 QGSSPH-RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPP 113
G H+GYG+IEYE A + F+L GQ++++ +A++ P
Sbjct: 2027 PGVEGRGLHQGYGWIEYEDNSALAAVMMCATNFELAGQFVKMCKALSTP 2075
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 1 MQHFPHVQVGRPSNMPQAQSVIDEIT--EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGP 58
+Q+ + + + + Q + I+ E ++ +RIY+ ++ ++TE D++ F +G
Sbjct: 1863 LQYLLQINLAFQEEVKKKQEAANAISRREAVEVLSRIYIGNLSREVTEFDLRKAFRKYGG 1922
Query: 59 IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108
I+ C ++ ++ KGY F+ ++ +A+ A+S MN +GG+ + +GR
Sbjct: 1923 IRECSVKHETTGTSFKGYAFLHFDAPEAAMLALSEMNGVIIGGRNIILGR 1972
>gi|395507287|ref|XP_003757958.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60-like [Sarcophilus harrisii]
Length = 463
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 15/132 (11%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY-GFIEYET 83
ITEE + +N IY+AS+H DL+ +DI VFEAF IK C L + HK Y GF YE
Sbjct: 157 ITEEVRAFNCIYMASVHKDLSGDDIXHVFEAFEKIKSCIL---TWDPXHKDYDGFCXYEK 213
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAK 143
Q++ +AIS MN +LG + +A+ P + + A AVAA A AK
Sbjct: 214 AQSTQDAISFMNXINLGSXXFQTNKAVLP-----------TTPGDLLPAGAVAANAIIAK 262
Query: 144 IQAMDGGATNAV 155
+ A + A A+
Sbjct: 263 VIAXEAXAGTAL 274
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++ V SI+ L E+ I F F PIK + S +HK F+E E + + A+
Sbjct: 78 QVSVGSIYYKLGEDIICQAFAPFEPIKNINMSWNSDTMKHKALAFVECEVPEVAQLALXX 137
Query: 94 MNLFDLGGQYLRVGRAITP 112
MN LG + ++ P
Sbjct: 138 MNSVRLGVRITKMDXVYRP 156
>gi|330793087|ref|XP_003284617.1| hypothetical protein DICPUDRAFT_148416 [Dictyostelium purpureum]
gi|325085416|gb|EGC38823.1| hypothetical protein DICPUDRAFT_148416 [Dictyostelium purpureum]
Length = 829
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
NRIY+ SI+ ++TEE I+ +F FG I C L Q + +HKGYGFI++E K+++++A+
Sbjct: 622 NRIYIGSINWNVTEEQIRGIFSQFGKIISCFLMQNTETGKHKGYGFIDFENKKSADDAL- 680
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTS 127
+MN F+L G+ ++VGR +A S G TS
Sbjct: 681 AMNGFELLGRAMKVGRPTKGASANTISNGSIDKTS 715
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+Y+ ++H L E+ I F FG +K L + ++ + KGY FIEYE+ ++ +AI S
Sbjct: 464 RVYIGNLHFSLAEDAIIQAFSQFGTVKSILLGKDAN-GKSKGYAFIEYESPDSATKAIES 522
Query: 94 MNLFDLGGQYLRVGRAI 110
M+ + + G+ ++V R +
Sbjct: 523 MSNYVMAGRVIKVNRPL 539
>gi|384498450|gb|EIE88941.1| hypothetical protein RO3G_13652 [Rhizopus delemar RA 99-880]
Length = 454
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
LY R+Y+ S+H LTE D++ +FE FGP+ + L + R KG+GFI+Y+ + +A
Sbjct: 222 LYQRLYIGSLHFSLTENDVRQIFEPFGPLDFVNLHKDPETGRSKGFGFIQYKNANDAKQA 281
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAMD 148
+ MN F+L G+ L+VG S+ G + +++ A AK+ A D
Sbjct: 282 LEKMNGFELAGRNLKVGLVSEKSGTTMSTFGLDDEETEGLALNSLSRAELMAKLAARD 339
>gi|281209343|gb|EFA83511.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 1109
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
NRIYV SI ++ E+ IK +F + G + C L RHKG+GFI+Y+ +++ +AI+
Sbjct: 873 NRIYVGSIPWNVNEDQIKVIFSSIGNVVSCSLMPNLESGRHKGFGFIDYDNSKSAEDAIA 932
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHM--PTAAAVAAAAATAKIQ 145
++N +D+GG+ L+VGR I NA SS + T+ + P ++++ T I+
Sbjct: 933 TLNGYDIGGRQLKVGRPIK--NASISSSNESKQTTPLSTPMVPTLSSSVGTDSIE 985
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
PS P + E+A+ +RIY+ +IH +LTE D+ S+F FGPIK L + +
Sbjct: 666 PSTTPTTHPKQQQTPEQAQ--SRIYIGNIHFNLTETDLTSIFSPFGPIKSLSLSKDPATG 723
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+ KGY FIEY +A+N AIS MN L G+ ++VGR P
Sbjct: 724 KSKGYCFIEYSYPEAANNAISHMNHQSLAGRQIKVGRPYIP 764
>gi|66809079|ref|XP_638262.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60466725|gb|EAL64776.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 1035
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 57/75 (76%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIY+ SI+ ++TE+ ++S+F FG + C L Q + +HKG+GF+++E K+++++AI++
Sbjct: 770 RIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIAT 829
Query: 94 MNLFDLGGQYLRVGR 108
MN F+L G+ ++VGR
Sbjct: 830 MNGFELLGRSIKVGR 844
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIYV S+H LTE+ I++ F FG IK L + +S + KGY FIEY+ ++++ +A+ S
Sbjct: 589 RIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDAS-GKSKGYAFIEYDNQESAAKALQS 647
Query: 94 MNLFDLGGQYLRVGRAIT 111
M + + G+ ++V R T
Sbjct: 648 MTNYVMCGRAIKVARPFT 665
>gi|298710792|emb|CBJ32209.1| RNA-binding protein SiahBP [Ectocarpus siliculosus]
Length = 696
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIYV S+H +L E DI S+F FG +K + SS RHKG+ FIEY ++++ A+ +
Sbjct: 288 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRA 347
Query: 94 MNLFDLGGQYLRVGRAI 110
MN F+L G+ ++VGR +
Sbjct: 348 MNGFELAGRAIKVGRPL 364
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKL-QQGSSPHRHKGYGFIEYETKQASNEAIS 92
+IYV ++ P +T E IK+VFE FG + ++ Q S+P HKG+GFI+Y + + I
Sbjct: 427 KIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVID 486
Query: 93 SMNLFDLGGQYLRVGRA 109
+M+ F+L G+ LRV A
Sbjct: 487 TMSSFELAGRTLRVAWA 503
>gi|430811846|emb|CCJ30702.1| unnamed protein product [Pneumocystis jirovecii]
Length = 486
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +LTE+D++ +FE FG +++ +LQ+ R +GYGF++Y + +A+
Sbjct: 225 FHRLYVGNIHFNLTEDDLRQIFEPFGELEFVQLQKEPDTGRSRGYGFVQYRDPAQARDAL 284
Query: 92 SSMNLFDLGGQYLRVG 107
MN F+L G+ +RVG
Sbjct: 285 EKMNGFELAGRAIRVG 300
>gi|322694933|gb|EFY86751.1| RNA splicing factor Pad-1 [Metarhizium acridum CQMa 102]
Length = 562
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG ++Y +LQ+ + R +GYGF+++ + EA+
Sbjct: 276 FHRLYVGNIHFNVTEQDLQAVFEPFGELEYVQLQKDDN-GRSRGYGFVQFRDATQAREAL 334
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 335 EKMNGFDLAGRPIRVG 350
>gi|429860108|gb|ELA34858.1| RNA splicing factor (pad-1) [Colletotrichum gloeosporioides Nara
gc5]
Length = 628
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG +++ +LQ+ + R +GYGF++Y + EA+
Sbjct: 284 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDDN-GRSRGYGFVQYREASQAREAL 342
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 343 EKMNGFDLAGRPIRVG 358
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 38/68 (55%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L D+K+ FE GP+ ++ + R KG G++E++
Sbjct: 176 QLTEDERDRRTVFVQQLAARLRTRDLKAFFEKVGPVNEAQIVKDRISQRSKGVGYVEFKN 235
Query: 84 KQASNEAI 91
+++ +A+
Sbjct: 236 EESVTQAL 243
>gi|322704095|gb|EFY95694.1| RNA splicing factor Pad-1 [Metarhizium anisopliae ARSEF 23]
Length = 558
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG ++Y +LQ+ + R +GYGF+++ + EA+
Sbjct: 272 FHRLYVGNIHFNVTEQDLQAVFEPFGELEYVQLQKDDN-GRSRGYGFVQFRDATQAREAL 330
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 331 EKMNGFDLAGRPIRVG 346
>gi|121700823|ref|XP_001268676.1| RNA splicing factor (Pad-1), putative [Aspergillus clavatus NRRL 1]
gi|119396819|gb|EAW07250.1| RNA splicing factor (Pad-1), putative [Aspergillus clavatus NRRL 1]
Length = 566
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 274 FHRLYVGNIHFSITENDLQNVFEPFGELEFVQLQKDET-GRSRGYGFVQFRDPNQAREAL 332
Query: 92 SSMNLFDLGGQYLRVG---RAITPPNALHSSKG 121
MN FDL G+ +RVG TP ++ S+G
Sbjct: 333 EKMNGFDLAGRAIRVGLGNDKFTPDSSAQRSQG 365
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+ + I+V + L +++ + FE GP+K ++ + R KG G++E+++
Sbjct: 167 ELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKS 226
Query: 84 KQASNEAI 91
+++ AI
Sbjct: 227 EESVAPAI 234
>gi|440487895|gb|ELQ67659.1| RNA-binding protein rsd1 [Magnaporthe oryzae P131]
Length = 570
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 61/97 (62%), Gaps = 7/97 (7%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ S R +GYGF+++ + EA+
Sbjct: 272 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDS-GRSRGYGFVQFRDATQAREAL 330
Query: 92 SSMNLFDLGGQYLRVG---RAITPP---NALHSSKGP 122
MN FDL G+ +RVG TP N L +GP
Sbjct: 331 EKMNGFDLAGRPIRVGLGNDKFTPESTANLLRGFQGP 367
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L ++K FE GP+ ++ + +R KG G++E++T+
Sbjct: 167 LTEDERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFKTE 226
Query: 85 QA 86
++
Sbjct: 227 ES 228
>gi|389644626|ref|XP_003719945.1| RNA splicing factor Pad-1 [Magnaporthe oryzae 70-15]
gi|351639714|gb|EHA47578.1| RNA splicing factor Pad-1 [Magnaporthe oryzae 70-15]
Length = 564
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 61/97 (62%), Gaps = 7/97 (7%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ S R +GYGF+++ + EA+
Sbjct: 272 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDS-GRSRGYGFVQFRDATQAREAL 330
Query: 92 SSMNLFDLGGQYLRVG---RAITPP---NALHSSKGP 122
MN FDL G+ +RVG TP N L +GP
Sbjct: 331 EKMNGFDLAGRPIRVGLGNDKFTPESTANLLRGFQGP 367
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L ++K FE GP+ ++ + +R KG G++E++T+
Sbjct: 167 LTEDERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFKTE 226
Query: 85 QA 86
++
Sbjct: 227 ES 228
>gi|440470687|gb|ELQ39749.1| RNA-binding protein rsd1 [Magnaporthe oryzae Y34]
Length = 566
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 61/97 (62%), Gaps = 7/97 (7%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ S R +GYGF+++ + EA+
Sbjct: 272 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDS-GRSRGYGFVQFRDATQAREAL 330
Query: 92 SSMNLFDLGGQYLRVG---RAITPP---NALHSSKGP 122
MN FDL G+ +RVG TP N L +GP
Sbjct: 331 EKMNGFDLAGRPIRVGLGNDKFTPESTANLLRGFQGP 367
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L ++K FE GP+ ++ + +R KG G++E++T+
Sbjct: 167 LTEDERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFKTE 226
Query: 85 QA 86
++
Sbjct: 227 ES 228
>gi|400598297|gb|EJP66014.1| CC1-like family splicing factor [Beauveria bassiana ARSEF 2860]
Length = 556
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TEED+++VFE FG +++ +LQ+ S R +GYGF+++ + EA+
Sbjct: 268 FHRLYVGNIHFNVTEEDLRAVFEPFGELEFVQLQKDES-DRSRGYGFVQFRDATQAREAL 326
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 327 EKMNGFDLAGRPIRVG 342
>gi|320593519|gb|EFX05928.1| RNA splicing factor [Grosmannia clavigera kw1407]
Length = 610
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 309 FHRLYVGNIHFSITESDLRNVFEPFGELEFVQLQKDDTG-RSRGYGFVQFRDSDQAREAL 367
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 368 EKMNGFDLAGRPIRVG 383
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 36/67 (53%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L ++K FE GP+ ++ + +R KG G++E+ ++
Sbjct: 201 LTEDERDRRTVFVQQLAARLRTRELKDFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFRSE 260
Query: 85 QASNEAI 91
++ A+
Sbjct: 261 ESVTAAL 267
>gi|67517282|ref|XP_658521.1| hypothetical protein AN0917.2 [Aspergillus nidulans FGSC A4]
gi|40746790|gb|EAA65946.1| hypothetical protein AN0917.2 [Aspergillus nidulans FGSC A4]
gi|259488796|tpe|CBF88530.1| TPA: RNA splicing factor (Pad-1), putative (AFU_orthologue;
AFUA_1G15810) [Aspergillus nidulans FGSC A4]
Length = 552
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH + E D++SVFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 272 FHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDET-GRSRGYGFVQFRDPNQAREAL 330
Query: 92 SSMNLFDLGGQYLRVG---RAITPPN 114
MN +DLGG+ +RVG TP N
Sbjct: 331 EKMNGYDLGGRAIRVGLGNDKFTPEN 356
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+ + I+V + L +++ + FE GP+K ++ + R KG G++E++
Sbjct: 165 ELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKD 224
Query: 84 KQASNEAI 91
+ + AI
Sbjct: 225 ESSVAPAI 232
>gi|402084391|gb|EJT79409.1| RNA splicing factor Pad-1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 601
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L++R+YV +IH +TE D+++VF FG +++ +LQ+ + R +GYGF+EY + EA
Sbjct: 310 LFHRLYVGNIHFSITEPDLRTVFGPFGELRFVQLQKEDN-GRSRGYGFVEYNDPANAREA 368
Query: 91 ISSMNLFDLGGQYLRVG 107
+ MN FDL G+ +RVG
Sbjct: 369 LEKMNGFDLAGRPIRVG 385
Score = 35.4 bits (80), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 36/63 (57%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L +++ FE GP+ ++ + +R KG G++E+++
Sbjct: 201 QLTEDERDRRTVFVQQLAARLRTKELHEFFEQAGPVAAAQIVKDRVSNRSKGVGYVEFKS 260
Query: 84 KQA 86
+++
Sbjct: 261 EES 263
>gi|70996384|ref|XP_752947.1| RNA splicing factor (Pad-1) [Aspergillus fumigatus Af293]
gi|66850582|gb|EAL90909.1| RNA splicing factor (Pad-1), putative [Aspergillus fumigatus Af293]
gi|159131701|gb|EDP56814.1| RNA splicing factor (Pad-1), putative [Aspergillus fumigatus A1163]
Length = 566
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ + R KGYGF+++ + EA+
Sbjct: 274 FHRLYVGNIHFSITENDLQNVFEPFGELEFVQLQKDEA-GRSKGYGFVQFRDPNQAREAL 332
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 333 EKMNGFDLAGRAIRVG 348
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+ + I+V + L +++ + FE GP+K ++ + R KG G++E+++
Sbjct: 167 ELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKS 226
Query: 84 KQASNEAI 91
+++ AI
Sbjct: 227 EESVAPAI 234
>gi|119494703|ref|XP_001264168.1| RNA splicing factor (Pad-1), putative [Neosartorya fischeri NRRL
181]
gi|119412330|gb|EAW22271.1| RNA splicing factor (Pad-1), putative [Neosartorya fischeri NRRL
181]
Length = 566
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ + R KGYGF+++ + EA+
Sbjct: 274 FHRLYVGNIHFSITENDLQNVFEPFGELEFVQLQKDEA-GRSKGYGFVQFRDPNQAREAL 332
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 333 EKMNGFDLAGRAIRVG 348
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+ + I+V + L +++ + FE GP+K ++ + R KG G++E+++
Sbjct: 167 ELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKS 226
Query: 84 KQASNEAI 91
+++ AI
Sbjct: 227 EESVAPAI 234
>gi|171690010|ref|XP_001909937.1| hypothetical protein [Podospora anserina S mat+]
gi|170944960|emb|CAP71071.1| unnamed protein product [Podospora anserina S mat+]
Length = 565
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 277 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDT-GRSRGYGFVQFRDATQAREAL 335
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 336 EKMNGFDLAGRPIRVG 351
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L +++K FE GP+ ++ + +R KG G++E++ +
Sbjct: 171 LTEDERDRRTVFVQQLAARLRTKELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNE 230
Query: 85 QASNEAISSMNLFDLGGQYL 104
+ A+ L GQ L
Sbjct: 231 DSVQAALQ------LTGQKL 244
>gi|367034680|ref|XP_003666622.1| hypothetical protein MYCTH_2311474 [Myceliophthora thermophila ATCC
42464]
gi|347013895|gb|AEO61377.1| hypothetical protein MYCTH_2311474 [Myceliophthora thermophila ATCC
42464]
Length = 575
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ S R +GYGF+++ + EA+
Sbjct: 291 FHRLYVGNIHFSITETDLQNVFEPFGELEFVQLQKDDS-GRSRGYGFVQFRDASQAREAL 349
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 350 EKMNGFDLAGRPIRVG 365
>gi|378731264|gb|EHY57723.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 562
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 267 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDET-GRSRGYGFVQFRDPNQAREAL 325
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 326 EKMNGFDLAGRPIRVG 341
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
G P ++++ ++TE+ + ++V + L +++ FE GP+K ++ +
Sbjct: 146 GSPRKRVKSKTPEPQLTEDERDRRTVFVQQLAARLRTKELIQFFEKAGPVKEAQIVKDRV 205
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
R KG G++E++ +++ AI LG + + +T ++ P STSH
Sbjct: 206 SGRSKGVGYVEFKNEESVPLAIQMTGQKLLG---IPIIAQLTEAEKNRQARNPEASTSH 261
>gi|169767236|ref|XP_001818089.1| RNA-binding protein rsd1 [Aspergillus oryzae RIB40]
gi|238484073|ref|XP_002373275.1| RNA splicing factor (Pad-1), putative [Aspergillus flavus NRRL3357]
gi|83765944|dbj|BAE56087.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220701325|gb|EED57663.1| RNA splicing factor (Pad-1), putative [Aspergillus flavus NRRL3357]
gi|391870727|gb|EIT79903.1| transcriptional coactivator CAPER [Aspergillus oryzae 3.042]
Length = 568
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 276 FHRLYVGNIHFSITENDLQNVFEPFGELEFVQLQKDET-GRSRGYGFVQFRDPNQAREAL 334
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 335 EKMNGFDLAGRAIRVG 350
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+ + I+V + L +++ + FE GP+K ++ + R KG G++E++
Sbjct: 169 ELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKN 228
Query: 84 KQASNEAISSMNLFDLGGQYL 104
+ + AI L GQ L
Sbjct: 229 EDSVAPAIQ------LTGQKL 243
>gi|18376336|emb|CAD21082.1| RNA splicing factor Pad-1 [Neurospora crassa]
Length = 571
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 281 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDN-GRSRGYGFVQFRDAGQAREAL 339
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 340 EKMNGFDLAGRPIRVG 355
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 14 NMPQAQSVIDE-ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHR 72
N P+A+ + +TE+ + ++V + L ++K FE GP+ ++ + +R
Sbjct: 163 NTPRARDGTPQPLTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNR 222
Query: 73 HKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104
KG G++E++ + + A+ L GQ L
Sbjct: 223 SKGVGYVEFKNEDSVQAALQ------LTGQKL 248
>gi|340522099|gb|EGR52332.1| predicted protein [Trichoderma reesei QM6a]
Length = 569
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 281 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDDN-GRSRGYGFVQFRDAGQAREAL 339
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 340 EKMNGFDLAGRPIRVG 355
>gi|336468898|gb|EGO57061.1| hypothetical protein NEUTE1DRAFT_66048 [Neurospora tetrasperma FGSC
2508]
gi|350288804|gb|EGZ70029.1| RNA splicing factor Pad-1 [Neurospora tetrasperma FGSC 2509]
Length = 571
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 281 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDN-GRSRGYGFVQFRDAGQAREAL 339
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 340 EKMNGFDLAGRPIRVG 355
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 14 NMPQAQSVIDE-ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHR 72
N P+A+ + +TE+ + ++V + L ++K FE GP+ ++ + +R
Sbjct: 163 NTPRARDGTPQPLTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNR 222
Query: 73 HKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104
KG G++E++ + + A+ L GQ L
Sbjct: 223 SKGVGYVEFKNEDSVQAALQ------LTGQKL 248
>gi|345563952|gb|EGX46935.1| hypothetical protein AOL_s00097g361 [Arthrobotrys oligospora ATCC
24927]
Length = 546
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE +++ VF FG +++ +LQ+ S R +GYGF++Y + EA+
Sbjct: 266 FHRLYVGNIHFSITENELQQVFAPFGDLEFVQLQKEESG-RSRGYGFVQYRDPNNAKEAL 324
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDLGG+ +RVG
Sbjct: 325 ERMNGFDLGGRLIRVG 340
>gi|358370208|dbj|GAA86820.1| RNA splicing factor (Pad-1) [Aspergillus kawachii IFO 4308]
Length = 571
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 279 FHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQKDET-GRSRGYGFVQFRDPNQAREAL 337
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 338 EKMNGFDLAGRAIRVG 353
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%)
Query: 16 PQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKG 75
P+++ E TE+ + I+V + L +++ + FE GP+K ++ + R KG
Sbjct: 164 PRSRERTPEPTEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKG 223
Query: 76 YGFIEYETKQASNEAI 91
G++E++++ A AI
Sbjct: 224 VGYVEFKSEDAVAPAI 239
>gi|116200107|ref|XP_001225865.1| hypothetical protein CHGG_08209 [Chaetomium globosum CBS 148.51]
gi|88179488|gb|EAQ86956.1| hypothetical protein CHGG_08209 [Chaetomium globosum CBS 148.51]
Length = 586
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ S R +GYGF+++ + EA+
Sbjct: 280 FHRLYVGNIHFSITETDLQNVFEPFGELEFVQLQKDDS-GRSRGYGFVQFRDAGQAREAL 338
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 339 EKMNGFDLAGRPIRVG 354
>gi|115397599|ref|XP_001214391.1| hypothetical protein ATEG_05213 [Aspergillus terreus NIH2624]
gi|114192582|gb|EAU34282.1| hypothetical protein ATEG_05213 [Aspergillus terreus NIH2624]
Length = 568
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 276 FHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQKDET-GRSRGYGFVQFRDPNQAREAL 334
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 335 EKMNGFDLAGRAIRVG 350
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+ + I+V + L +++ + FE GP+K ++ + R KG G++E++
Sbjct: 169 ELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKN 228
Query: 84 KQASNEAI 91
+++ AI
Sbjct: 229 EESVAPAI 236
>gi|358399615|gb|EHK48952.1| hypothetical protein TRIATDRAFT_164478, partial [Trichoderma
atroviride IMI 206040]
Length = 571
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 282 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDDN-GRSRGYGFVQFRDAGQAREAL 340
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 341 EKMNGFDLAGRPIRVG 356
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L ++K FE GP+ ++ + R KG G++E++++
Sbjct: 176 LTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVNEAQIVKDRISGRSKGVGYVEFKSE 235
Query: 85 QASNEAI 91
A +A+
Sbjct: 236 DAVQQAL 242
>gi|145231104|ref|XP_001389816.1| RNA-binding protein rsd1 [Aspergillus niger CBS 513.88]
gi|134055944|emb|CAK37421.1| unnamed protein product [Aspergillus niger]
gi|350638781|gb|EHA27137.1| hypothetical protein ASPNIDRAFT_46267 [Aspergillus niger ATCC 1015]
Length = 570
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 278 FHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQKDET-GRSRGYGFVQFRDPNQAREAL 336
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 337 EKMNGFDLAGRAIRVG 352
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 41/76 (53%)
Query: 16 PQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKG 75
P+++ E TE+ + I+V + L +++ + FE GP+K ++ + R KG
Sbjct: 163 PRSRERTPEPTEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKG 222
Query: 76 YGFIEYETKQASNEAI 91
G++E++++ + AI
Sbjct: 223 VGYVEFKSEDSVAPAI 238
>gi|85076094|ref|XP_955878.1| hypothetical protein NCU03491 [Neurospora crassa OR74A]
gi|28916904|gb|EAA26642.1| hypothetical protein NCU03491 [Neurospora crassa OR74A]
Length = 576
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 281 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDN-GRSRGYGFVQFRDAGQAREAL 339
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 340 EKMNGFDLAGRPIRVG 355
Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 14 NMPQAQSVIDE-ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHR 72
N P+A+ + +TE+ + ++V + L ++K FE GP+ ++ + +R
Sbjct: 163 NTPRARDGTPQPLTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNR 222
Query: 73 HKGYGFIEYETKQASNEAI 91
KG G++E++ + + A+
Sbjct: 223 SKGVGYVEFKNEDSVQAAL 241
>gi|4530579|gb|AAD22102.1| Pad-1 [Neurospora crassa]
Length = 575
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 280 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDN-GRSRGYGFVQFRDAGQAREAL 338
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 339 EKMNGFDLAGRPIRVG 354
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 14 NMPQAQSVIDE-ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHR 72
N P+A+ + +TE+ + ++V + L ++K FE GP+ ++ + +R
Sbjct: 162 NTPRARDGTPQPLTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNR 221
Query: 73 HKGYGFIEYETKQASNEAI 91
KG G++E++ + + A+
Sbjct: 222 SKGVGYVEFKNEDSVQAAL 240
>gi|237836525|ref|XP_002367560.1| RNA-binding protein, putative [Toxoplasma gondii ME49]
gi|211965224|gb|EEB00420.1| RNA-binding protein, putative [Toxoplasma gondii ME49]
gi|221484014|gb|EEE22318.1| hypothetical protein TGGT1_018190 [Toxoplasma gondii GT1]
gi|221505287|gb|EEE30941.1| RNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 532
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG-SSPHRHKGYGFIEYETKQASNEAI 91
NR+Y+ ++ + ED+K +F FGPI C+L +P +H+GYGFIEY T A+ AI
Sbjct: 249 NRVYIGNVPFGFSSEDLKKIFVVFGPILSCQLLPSQENPQQHRGYGFIEYATADAAKLAI 308
Query: 92 SSMNLFDLGGQYLRVGRAI----TPPNALHSSKGPAPSTSHMPTAAAVAAA 138
+MN F++ G+ L+V A +P A + PS + +P A+ + A
Sbjct: 309 ETMNGFEVAGKQLKVNFATAMRNSPVVATPLAASLLPSMAGLPGASPLTAG 359
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNE 89
K RIYV S+ LTE +IKSVF+AFG I + + R KG+ F+EY + +A+
Sbjct: 72 KAMCRIYVGSLDYYLTELEIKSVFQAFGTIVSVDMPK--EGDRSKGFCFVEYASPEAAEM 129
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAA 140
A+S+M F L G+ ++VGR + PA MPT +V AA
Sbjct: 130 ALSTMQNFVLKGRTIKVGRPTAVGTGGQQLQRPA---MMMPTVGSVGAAGG 177
>gi|380478594|emb|CCF43506.1| CC1-like family splicing factor [Colletotrichum higginsianum]
Length = 565
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG +++ +LQ+ + R +GYGF++Y + EA+
Sbjct: 278 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDDN-GRSRGYGFVQYREASQAREAL 336
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 337 EKMNGFDLAGRPIRVG 352
Score = 40.0 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 11 RPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSP 70
RP + ++ ++TE+ + ++V + L D+K+ FE GP+ ++ +
Sbjct: 159 RPETSSKREAT-PQLTEDERDRRTVFVQQLAARLRTRDLKAFFEKVGPVTEAQIVKDRIS 217
Query: 71 HRHKGYGFIEYETKQASNEAI 91
R KG G++E++ + + +A+
Sbjct: 218 QRSKGVGYVEFKNEDSVTQAL 238
>gi|401406015|ref|XP_003882457.1| GA11385, related [Neospora caninum Liverpool]
gi|325116872|emb|CBZ52425.1| GA11385, related [Neospora caninum Liverpool]
Length = 564
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG-SSPHRHKGYGFIEYETKQASNEAI 91
NR+Y+ ++ + ED+K +F FGPI C+L +P +H+GYGFIEY T A+ AI
Sbjct: 272 NRVYIGNVPFGFSSEDLKKIFVVFGPILSCQLLPSQENPQQHRGYGFIEYATADAAKLAI 331
Query: 92 SSMNLFDLGGQYLRV 106
+MN F++ G+ L+V
Sbjct: 332 ETMNGFEVAGKQLKV 346
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNE 89
K RIYV S+ LTE +IKSVF+AFG I + + R KG+ F+EY + +A+
Sbjct: 74 KAMCRIYVGSLDYYLTELEIKSVFQAFGTIVSVDMPK--EGDRSKGFCFVEYASPEAAEM 131
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQA 146
A+S+M F L G+ ++VGR + PA MPT + + A + A
Sbjct: 132 ALSTMQNFVLKGRTIKVGRPTAVGTGGQQLQRPA---MMMPTVSTMGAVGGLTGVAA 185
>gi|367054118|ref|XP_003657437.1| hypothetical protein THITE_2123146 [Thielavia terrestris NRRL 8126]
gi|347004703|gb|AEO71101.1| hypothetical protein THITE_2123146 [Thielavia terrestris NRRL 8126]
Length = 573
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ S R +GYGF+++ + EA+
Sbjct: 286 FHRLYVGNIHFSITETDLQNVFEPFGELEFVQLQKDDS-GRSRGYGFVQFRDAGQAREAL 344
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 345 EKMNGFDLAGRPIRVG 360
>gi|310798506|gb|EFQ33399.1| CC1-like family splicing factor [Glomerella graminicola M1.001]
Length = 565
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG +++ +LQ+ + R +GYGF++Y + EA+
Sbjct: 278 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDDN-GRSRGYGFVQYREASQAREAL 336
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 337 EKMNGFDLAGRPIRVG 352
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 10 GRPSNMPQAQS---VIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
+ + P+A S ++TE+ + ++V + L D+K+ FE GP+ ++ +
Sbjct: 154 AKDDDRPEASSKREATPQLTEDERDRRTVFVQQLAARLRTRDLKAFFEKVGPVTEAQIVK 213
Query: 67 GSSPHRHKGYGFIEYETKQASNEAI 91
R KG G++E++ + + +A+
Sbjct: 214 DRISQRSKGVGYVEFKNEDSVTQAL 238
>gi|327293227|ref|XP_003231310.1| RNA splicing factor [Trichophyton rubrum CBS 118892]
gi|326466426|gb|EGD91879.1| RNA splicing factor [Trichophyton rubrum CBS 118892]
Length = 592
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG + + +LQ+ + R KGYGF+++ + EA+
Sbjct: 298 FHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQREET-GRSKGYGFVQFRDPNQAREAL 356
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 357 EKMNGFDLAGRPIRVG 372
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
PS P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 183 PSKTPEPQ-----LTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSG 237
Query: 72 RHKGYGFIEYETKQA 86
R KG G++E++ +++
Sbjct: 238 RSKGVGYVEFKNEES 252
>gi|331242735|ref|XP_003334013.1| RNA-binding protein rsd1 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 546
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
Y R+YV S++ +LT++DI+ VF+ FG I+Y L + + KGY F++++ + A+
Sbjct: 423 YARLYVGSLNFNLTDDDIRQVFQPFGDIEYVDLHRDQITGKSKGYAFVQFKNMHDAKNAM 482
Query: 92 SSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
MN F L G+ LRV PP AL ++ P
Sbjct: 483 EKMNGFQLAGRALRVEIKAQPPAALLNATAPG 514
>gi|326471726|gb|EGD95735.1| RNA splicing factor [Trichophyton tonsurans CBS 112818]
Length = 592
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG + + +LQ+ + R KGYGF+++ + EA+
Sbjct: 298 FHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQREEA-GRSKGYGFVQFRDPNQAREAL 356
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 357 EKMNGFDLAGRPIRVG 372
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
PS P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 183 PSKTPEPQ-----LTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSG 237
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104
R KG G++E++ +++ AI L GQ L
Sbjct: 238 RSKGVGYVEFKNEESVPLAIQ------LTGQKL 264
>gi|315043566|ref|XP_003171159.1| RNA-binding protein rsd1 [Arthroderma gypseum CBS 118893]
gi|311344948|gb|EFR04151.1| RNA-binding protein rsd1 [Arthroderma gypseum CBS 118893]
Length = 589
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG + + +LQ+ + R KGYGF+++ + EA+
Sbjct: 295 FHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQREEA-GRSKGYGFVQFRDPNQAREAL 353
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 354 EKMNGFDLAGRPIRVG 369
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
PS P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 180 PSKTPEPQ-----LTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSG 234
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104
R KG G++E++ +++ AI L GQ L
Sbjct: 235 RSKGVGYVEFKNEESVPLAIQ------LTGQKL 261
>gi|302499164|ref|XP_003011578.1| hypothetical protein ARB_02131 [Arthroderma benhamiae CBS 112371]
gi|291175130|gb|EFE30938.1| hypothetical protein ARB_02131 [Arthroderma benhamiae CBS 112371]
Length = 594
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG + + +LQ+ + R KGYGF+++ + EA+
Sbjct: 300 FHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQREEA-GRSKGYGFVQFRDPNQAREAL 358
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 359 EKMNGFDLAGRPIRVG 374
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
PS P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 185 PSKTPEPQ-----LTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSG 239
Query: 72 RHKGYGFIEYETKQA 86
R KG G++E++ +++
Sbjct: 240 RSKGVGYVEFKNEES 254
>gi|296820488|ref|XP_002849949.1| RNA splicing factor Pad-1 [Arthroderma otae CBS 113480]
gi|238837503|gb|EEQ27165.1| RNA splicing factor Pad-1 [Arthroderma otae CBS 113480]
Length = 595
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG + + +LQ+ + R KGYGF+++ + EA+
Sbjct: 301 FHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQREEA-GRSKGYGFVQFRDPNQAREAL 359
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 360 EKMNGFDLAGRPIRVG 375
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L +++ + FE GP+K ++ + R KG G++E++
Sbjct: 193 QLTEDERDRRTVFVQQLAARLRTKELIAFFEKIGPVKEAQIVKDRVSGRSKGVGYVEFKN 252
Query: 84 KQASNEAISSMNLFDLGGQYL 104
+++ AI L GQ L
Sbjct: 253 EESVPLAIQ------LTGQKL 267
>gi|302664299|ref|XP_003023781.1| hypothetical protein TRV_02070 [Trichophyton verrucosum HKI 0517]
gi|291187796|gb|EFE43163.1| hypothetical protein TRV_02070 [Trichophyton verrucosum HKI 0517]
Length = 592
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG + + +LQ+ R KGYGF+++ + EA+
Sbjct: 298 FHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQR-EEAGRSKGYGFVQFRDPNQAREAL 356
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 357 EKMNGFDLAGRPIRVG 372
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
PS P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 183 PSKTPEPQ-----LTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSG 237
Query: 72 RHKGYGFIEYETKQA 86
R KG G++E++ +++
Sbjct: 238 RSKGVGYVEFKNEES 252
>gi|258578315|ref|XP_002543339.1| hypothetical protein UREG_02855 [Uncinocarpus reesii 1704]
gi|237903605|gb|EEP78006.1| hypothetical protein UREG_02855 [Uncinocarpus reesii 1704]
Length = 582
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG + + +LQ+ + R +GYGF+++ + EA+
Sbjct: 294 FHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQKDEN-GRSRGYGFVQFRDPNQAREAL 352
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 353 EKMNGFDLAGRPIRVG 368
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 43/75 (57%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
PS P++++ ++TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 174 PSPKPRSKTPEPQLTEDERDKRTVFVQQLAARLRTKELIAFFEKAGPVKDAQIVKDRVSG 233
Query: 72 RHKGYGFIEYETKQA 86
R KG G++E++ +++
Sbjct: 234 RSKGVGYVEFKNEES 248
>gi|326485177|gb|EGE09187.1| RNA splicing factor [Trichophyton equinum CBS 127.97]
Length = 560
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG + + +LQ+ + R KGYGF+++ + EA+
Sbjct: 266 FHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQREEA-GRSKGYGFVQFRDPNQAREAL 324
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 325 EKMNGFDLAGRPIRVG 340
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
PS P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 151 PSKTPEPQ-----LTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSG 205
Query: 72 RHKGYGFIEYETKQA 86
R KG G++E++ +++
Sbjct: 206 RSKGVGYVEFKNEES 220
>gi|119186105|ref|XP_001243659.1| hypothetical protein CIMG_03100 [Coccidioides immitis RS]
gi|392870366|gb|EAS32162.2| CC1-like family splicing factor [Coccidioides immitis RS]
Length = 595
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG + + +LQ+ + R +GYGF+++ + EA+
Sbjct: 305 FHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQKDEN-GRSRGYGFVQFRDPNQAREAL 363
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 364 EKMNGFDLAGRPIRVG 379
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 11 RPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSP 70
R S P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 189 RRSKTPEPQ-----LTEDERDKRTVFVQQLAARLRTKELIAFFEKAGPVKDAQIVKDRVS 243
Query: 71 HRHKGYGFIEYETKQA 86
R KG G++E++ +++
Sbjct: 244 GRSKGVGYVEFKNEES 259
>gi|154322639|ref|XP_001560634.1| hypothetical protein BC1G_00662 [Botryotinia fuckeliana B05.10]
gi|347837181|emb|CCD51753.1| hypothetical protein [Botryotinia fuckeliana]
Length = 570
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ R +GYGF+++ + EA+
Sbjct: 275 FHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQK-EEQGRSRGYGFVQFRDPNQAREAL 333
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 334 EKMNGFDLAGRPIRVG 349
>gi|303318024|ref|XP_003069014.1| splicing factor, CC1-like family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240108695|gb|EER26869.1| splicing factor, CC1-like family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320036831|gb|EFW18769.1| RNA splicing factor [Coccidioides posadasii str. Silveira]
Length = 593
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG + + +LQ+ + R +GYGF+++ + EA+
Sbjct: 303 FHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQKDEN-GRSRGYGFVQFRDPNQAREAL 361
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 362 EKMNGFDLAGRPIRVG 377
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 11 RPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSP 70
R S P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 187 RRSKTPEPQ-----LTEDERDKRTVFVQQLAARLRTKELIAFFEKAGPVKDAQIVKDRVS 241
Query: 71 HRHKGYGFIEYETKQA 86
R KG G++E++ +++
Sbjct: 242 GRSKGVGYVEFKNEES 257
>gi|346972403|gb|EGY15855.1| RNA-binding protein rsd1 [Verticillium dahliae VdLs.17]
Length = 570
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG +++ +LQ+ + R +GYGF++Y + EA+
Sbjct: 283 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDDT-GRSRGYGFVQYRDAGQAREAL 341
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 342 EKMNGFDLAGRPIRVG 357
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 37/76 (48%)
Query: 16 PQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKG 75
P + +TE+ + ++V + L ++K FE GP+ ++ + R KG
Sbjct: 168 PSKREGTPPLTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVNEAQIVKDRISQRSKG 227
Query: 76 YGFIEYETKQASNEAI 91
G++E++++ +A+
Sbjct: 228 VGYVEFKSEDTVTQAL 243
>gi|429329604|gb|AFZ81363.1| RNA recognition motif domain-containing protein [Babesia equi]
Length = 494
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIY+ S+ PD+ EEDI+++F +FG I ++ + S ++ KGY F+EY K++++ AI S
Sbjct: 153 RIYIGSLDPDVKEEDIRTIFSSFGEITCIEMPRDPSTNKSKGYCFVEYRKKESADVAIVS 212
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
M F + G+ +++G+ PNA
Sbjct: 213 MQGFQIKGRPIKLGK----PNA 230
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKL-QQGSSPHRHKGYGFIEYETKQASNEAIS 92
R+++ ++ +L +DIK +FE FG I C L + P G G+I++E+ Q + S
Sbjct: 320 RVHLENVPFELGSQDIKKIFEPFGTIINCVLIPRDMLPGSFYGCGYIDFESPQVAQIVSS 379
Query: 93 SMNLFDLGGQYLRVGRA---ITPPNAL 116
+MN F++ G ++V A + P N +
Sbjct: 380 AMNGFEIAGAKVQVTMAPSSLEPSNVI 406
>gi|209881578|ref|XP_002142227.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209557833|gb|EEA07878.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 533
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 10/125 (8%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG-SSPHRHKGYGFIEYETKQASNEAI 91
NRIY+ S+ T +D++ +F+AFG I C+L P H+GYGFIE+ T + AI
Sbjct: 278 NRIYIGSVPYSFTPDDLRHIFKAFGVILSCQLIPSVEKPGTHRGYGFIEFGTPDQAKLAI 337
Query: 92 SSMNLFDLGGQYLRVG--RAITPPNALHSSKGPAPS-------TSHMPTAAAVAAAAATA 142
+MN F++GG+ L+V A+ P N++ S++ P S + +P A+ A
Sbjct: 338 ETMNGFEVGGKQLKVNVATALKPSNSISSNQIPIVSPTLQNVMSQQIPPTLAIPPTMAIP 397
Query: 143 KIQAM 147
+ +M
Sbjct: 398 PVLSM 402
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIYV S+ L+E D++ VF +FG I + + +R KG+ FIEY T++++ A+++
Sbjct: 157 RIYVGSLDYSLSEADLRQVFGSFGTIVNIDMPREG--NRSKGFCFIEYTTQESAEMALAT 214
Query: 94 MNLFDLGGQYLRVGRAITPPNALHS 118
MN F L G+ ++VGR P NA+ S
Sbjct: 215 MNRFVLKGRPIKVGR---PTNAIVS 236
>gi|156064869|ref|XP_001598356.1| hypothetical protein SS1G_00444 [Sclerotinia sclerotiorum 1980]
gi|154691304|gb|EDN91042.1| hypothetical protein SS1G_00444 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 570
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ R +GYGF+++ + EA+
Sbjct: 275 FHRLYVGNIHFSITEADLQNVFEPFGELEFVQLQK-EEQGRSRGYGFVQFRDPNQAREAL 333
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 334 EKMNGFDLAGRPIRVG 349
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L +++ + FE GP+K ++ + R KG G++E++ +
Sbjct: 169 LTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNE 228
Query: 85 QASNEAISSMNLFDLGGQYL 104
++ AI L GQ L
Sbjct: 229 ESVPAAIQ------LTGQRL 242
>gi|119602591|gb|EAW82185.1| fuse-binding protein-interacting repressor, isoform CRA_b [Homo
sapiens]
Length = 171
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 94 MNLFDLGGQYLRVGR 108
MN LGG+ ++VGR
Sbjct: 147 MNSVMLGGRNIKVGR 161
>gi|296411655|ref|XP_002835545.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629331|emb|CAZ79702.1| unnamed protein product [Tuber melanosporum]
Length = 533
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Query: 17 QAQSVIDEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKG 75
QA+ E T ++ ++R+YV +IH +TE D+++VFE FG +++ +LQ+ R +G
Sbjct: 220 QARVSAAEATTTNQIPFHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQK-EEGGRSRG 278
Query: 76 YGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107
YGF++Y + EA+ MN FDL G+ +RVG
Sbjct: 279 YGFVQYRDPNQAREALEKMNGFDLAGRPIRVG 310
Score = 36.6 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 38/68 (55%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L +++ + FE GP+K ++ + R KG G++E++
Sbjct: 129 QLTEDERDRRTVFVQQLAARLRTKELITFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKD 188
Query: 84 KQASNEAI 91
+ + +AI
Sbjct: 189 EASVPKAI 196
>gi|440632886|gb|ELR02805.1| hypothetical protein GMDG_05742 [Geomyces destructans 20631-21]
Length = 575
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ R +GYGF+++ + EA+
Sbjct: 276 FHRLYVGNIHFSITEGDLQNVFEPFGELEFVQLQK-EDQGRSRGYGFVQFRDPHQAREAL 334
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 335 EKMNGFDLAGRPIRVG 350
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L +++ + FE GP+K ++ + R KG G++E++ +
Sbjct: 170 LTEDERDKRTVFVQQLAARLRSKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNE 229
Query: 85 QASNEAI 91
++ AI
Sbjct: 230 ESVAAAI 236
>gi|407918973|gb|EKG12232.1| hypothetical protein MPH_10639 [Macrophomina phaseolina MS6]
Length = 602
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ R +GYGF+++ + EA+
Sbjct: 308 FHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQK-EEGGRSRGYGFVQFRDPAQAKEAL 366
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 367 EKMNGFDLAGRPIRVG 382
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L +D+ + FE GP+K ++ + R KG G++E++ +
Sbjct: 202 LTEDERDRRTVFVQQLAARLRTKDLIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNE 261
Query: 85 QASNEAI 91
++ AI
Sbjct: 262 ESVPAAI 268
>gi|341038993|gb|EGS23985.1| RNA splicing factor (pad-1)-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 594
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D++ VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 326 FHRLYVGNIHFSITETDLQHVFEPFGELEFVQLQKDEN-GRSRGYGFVQFRDAANAREAL 384
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 385 EKMNGFDLAGRPIRVG 400
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T + + ++V + L ++K FE GP+ ++ + +R KG G++E+++++
Sbjct: 223 TNDERDRRTVFVQQLAARLRTRELKEFFEKAGPVAEAQIVKDRVSNRSKGVGYVEFKSEE 282
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTA 132
+ A+ L GQ L I P ++ ++ H P +
Sbjct: 283 SVAAALQ------LTGQKLLGIPIIVQPTEAEKNRQARTTSGHHPNS 323
>gi|226295167|gb|EEH50587.1| RNA splicing factor Pad-1 [Paracoccidioides brasiliensis Pb18]
Length = 600
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D++ VFE FG + + +LQ+ R +GYGF+++ + EA+
Sbjct: 304 FHRLYVGNIHFSITESDLQKVFEPFGELDFVQLQK-EEGGRSRGYGFVQFRDPNQAREAL 362
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 363 EKMNGFDLAGRPIRVG 378
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
GR S P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 187 GRRSRTPEPQ-----LTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRV 241
Query: 70 PHRHKGYGFIEYETKQA 86
R KG G++E++ +++
Sbjct: 242 SGRSKGVGYVEFKDEES 258
>gi|358386930|gb|EHK24525.1| hypothetical protein TRIVIDRAFT_71881 [Trichoderma virens Gv29-8]
Length = 571
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 62/103 (60%), Gaps = 16/103 (15%)
Query: 5 PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL 64
P G P+++P ++R+YV +IH ++TE+D+++VFE FG +++ +L
Sbjct: 271 PDASNGHPNSIP---------------FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQL 315
Query: 65 QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107
Q+ + R +GYGF+++ + EA+ MN FDL G+ +RVG
Sbjct: 316 QKDDN-GRSRGYGFVQFRDAGQAREALEKMNGFDLAGRPIRVG 357
>gi|225677677|gb|EEH15961.1| RNA-binding protein rsd1 [Paracoccidioides brasiliensis Pb03]
Length = 600
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D++ VFE FG + + +LQ+ R +GYGF+++ + EA+
Sbjct: 304 FHRLYVGNIHFSITESDLQKVFEPFGELDFVQLQK-EEGGRSRGYGFVQFRDPNQAREAL 362
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 363 EKMNGFDLAGRPIRVG 378
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
GR S P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 187 GRRSRTPEPQ-----LTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRV 241
Query: 70 PHRHKGYGFIEYETKQA 86
R KG G++E++ +++
Sbjct: 242 SGRSKGVGYVEFKDEES 258
>gi|242773880|ref|XP_002478329.1| RNA splicing factor (Pad-1), putative [Talaromyces stipitatus ATCC
10500]
gi|218721948|gb|EED21366.1| RNA splicing factor (Pad-1), putative [Talaromyces stipitatus ATCC
10500]
Length = 562
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE DI++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 267 FHRLYVGNIHFSITENDIQNVFEPFGELEFVQLQKDET-GRSRGYGFVQFRDPNQAREAL 325
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 326 EKMNGFDLAGRPIRVG 341
>gi|212531765|ref|XP_002146039.1| RNA splicing factor (Pad-1), putative [Talaromyces marneffei ATCC
18224]
gi|210071403|gb|EEA25492.1| RNA splicing factor (Pad-1), putative [Talaromyces marneffei ATCC
18224]
Length = 562
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE DI++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 267 FHRLYVGNIHFSITENDIQNVFEPFGELEFVQLQKDET-GRSRGYGFVQFRDPNQAREAL 325
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 326 EKMNGFDLAGRPIRVG 341
>gi|225561416|gb|EEH09696.1| RNA splicing factor Pad-1 [Ajellomyces capsulatus G186AR]
Length = 584
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D++ VFE FG + + +LQ+ R +GYGF+++ + EA+
Sbjct: 288 FHRLYVGNIHFSITESDLQKVFEPFGELDFVQLQK-EEGGRSRGYGFVQFRDPNQAREAL 346
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 347 EKMNGFDLAGRPIRVG 362
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 36/63 (57%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L +++ + FE GP+K ++ + R KG G++E++
Sbjct: 180 QLTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKN 239
Query: 84 KQA 86
+++
Sbjct: 240 EES 242
>gi|154282581|ref|XP_001542086.1| hypothetical protein HCAG_02257 [Ajellomyces capsulatus NAm1]
gi|150410266|gb|EDN05654.1| hypothetical protein HCAG_02257 [Ajellomyces capsulatus NAm1]
Length = 585
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D++ VFE FG + + +LQ+ R +GYGF+++ + EA+
Sbjct: 289 FHRLYVGNIHFSITESDLQKVFEPFGELDFVQLQK-EEGGRSRGYGFVQFRDPNQAREAL 347
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 348 EKMNGFDLAGRPIRVG 363
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 36/63 (57%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L +++ + FE GP+K ++ + R KG G++E++
Sbjct: 181 QLTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKN 240
Query: 84 KQA 86
+++
Sbjct: 241 EES 243
>gi|261191422|ref|XP_002622119.1| RNA splicing factor [Ajellomyces dermatitidis SLH14081]
gi|239589885|gb|EEQ72528.1| RNA splicing factor [Ajellomyces dermatitidis SLH14081]
gi|239612708|gb|EEQ89695.1| RNA splicing factor [Ajellomyces dermatitidis ER-3]
gi|327351781|gb|EGE80638.1| RNA splicing factor [Ajellomyces dermatitidis ATCC 18188]
Length = 583
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D++ VFE FG + + +LQ+ R +GYGF+++ + EA+
Sbjct: 287 FHRLYVGNIHFSITESDLQKVFEPFGELDFVQLQK-EEGGRSRGYGFVQFRDPNQAREAL 345
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 346 EKMNGFDLAGRPIRVG 361
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 36/63 (57%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L +++ + FE GP+K ++ + R KG G++E++
Sbjct: 179 QLTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKD 238
Query: 84 KQA 86
+++
Sbjct: 239 EES 241
>gi|325090859|gb|EGC44169.1| RNA splicing factor [Ajellomyces capsulatus H88]
Length = 585
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D++ VFE FG + + +LQ+ R +GYGF+++ + EA+
Sbjct: 289 FHRLYVGNIHFSITESDLQKVFEPFGELDFVQLQK-EEGGRSRGYGFVQFRDPNQAREAL 347
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 348 EKMNGFDLAGRPIRVG 363
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 36/63 (57%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L +++ + FE GP+K ++ + R KG G++E++
Sbjct: 181 QLTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKN 240
Query: 84 KQA 86
+++
Sbjct: 241 EES 243
>gi|302915553|ref|XP_003051587.1| hypothetical protein NECHADRAFT_68161 [Nectria haematococca mpVI
77-13-4]
gi|256732526|gb|EEU45874.1| hypothetical protein NECHADRAFT_68161 [Nectria haematococca mpVI
77-13-4]
Length = 564
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 276 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDEN-GRSRGYGFVQFRDAGQAREAL 334
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 335 EKMNGFDLAGRPIRVG 350
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 37/68 (54%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L ++K FE GP+ ++ + R KG G++E++
Sbjct: 169 QLTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVNEAQIVKDRISQRSKGVGYVEFKN 228
Query: 84 KQASNEAI 91
+++ +A+
Sbjct: 229 EESVTQAL 236
>gi|346327401|gb|EGX96997.1| RNA splicing factor (Pad-1), putative [Cordyceps militaris CM01]
Length = 545
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VF+ FG +++ +LQ+ + +R +GYGF+++ + EA+
Sbjct: 257 FHRLYVGNIHFNVTEQDLQAVFDPFGELEFVQLQKDET-NRSRGYGFVQFRDAGQAREAL 315
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 316 EKMNGFDLAGRPIRVG 331
>gi|403175151|ref|XP_003889057.1| hypothetical protein PGTG_22242 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171476|gb|EHS64385.1| hypothetical protein PGTG_22242 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 705
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
Y R+YV S++ +LT++DI+ VF+ FG I+Y L + + KGY F++++ + A+
Sbjct: 449 YARLYVGSLNFNLTDDDIRQVFQPFGDIEYVDLHRDQITGKSKGYAFVQFKNMHDAKNAM 508
Query: 92 SSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
MN F L G+ LRV PP AL ++ P
Sbjct: 509 EKMNGFQLAGRALRVEIKAQPPAALLNATAPG 540
>gi|342884065|gb|EGU84408.1| hypothetical protein FOXB_05073 [Fusarium oxysporum Fo5176]
Length = 566
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 276 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDEN-GRSRGYGFVQFRDAGQAREAL 334
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 335 EKMNGFDLAGRPIRVG 350
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 37/68 (54%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L ++K FE GP+ ++ + R KG G++E++
Sbjct: 169 QLTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVNEAQIVKDRISQRSKGVGYVEFKN 228
Query: 84 KQASNEAI 91
+++ +A+
Sbjct: 229 EESVTQAL 236
>gi|429243189|ref|NP_594422.2| RNA-binding protein Rsd1 (predicted) [Schizosaccharomyces pombe
972h-]
gi|380865416|sp|O13845.2|RSD1_SCHPO RecName: Full=RNA-binding protein rsd1
gi|347834186|emb|CAB10118.2| RNA-binding protein Rsd1 (predicted) [Schizosaccharomyces pombe]
Length = 603
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+ V++IH +LT+ED+K++FE FG I++ LQ+ +R KG+G+I+Y ++ A+
Sbjct: 339 FHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISARNAL 397
Query: 92 SSMNLFDLGGQYLRV 106
MN FDL G+ +RV
Sbjct: 398 EKMNGFDLAGRNMRV 412
>gi|408394044|gb|EKJ73300.1| hypothetical protein FPSE_06565 [Fusarium pseudograminearum CS3096]
Length = 568
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 276 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDEN-GRSRGYGFVQFRDAGQAREAL 334
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 335 EKMNGFDLAGRPIRVG 350
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 37/68 (54%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L ++K FE GP+ ++ + R KG G++E++
Sbjct: 169 QLTEDERDRRTVFVQQLAARLRTRELKEFFERVGPVNEAQIVKDRISQRSKGVGYVEFKN 228
Query: 84 KQASNEAI 91
+++ +A+
Sbjct: 229 EESVTQAL 236
>gi|46121573|ref|XP_385341.1| hypothetical protein FG05165.1 [Gibberella zeae PH-1]
Length = 568
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH ++TE+D+++VFE FG +++ +LQ+ + R +GYGF+++ + EA+
Sbjct: 276 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDEN-GRSRGYGFVQFRDAGQAREAL 334
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 335 EKMNGFDLAGRPIRVG 350
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 37/68 (54%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L ++K FE GP+ ++ + R KG G++E++
Sbjct: 169 QLTEDERDRRTVFVQQLAARLRTRELKEFFERVGPVNEAQIVKDRISQRSKGVGYVEFKN 228
Query: 84 KQASNEAI 91
+++ +A+
Sbjct: 229 EESVTQAL 236
>gi|452986581|gb|EME86337.1| hypothetical protein MYCFIDRAFT_97432, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 540
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+K+VFE FG +++ +LQ+ R KGYGF+++ + EA+
Sbjct: 256 FHRLYVGNIHFSITEDDLKNVFEPFGELEFVQLQK-EEAGRSKGYGFVQFIDPAQAKEAL 314
Query: 92 SSMNLFDLGGQYLRVG 107
MN F+L G+ +RVG
Sbjct: 315 EKMNGFELAGRPIRVG 330
>gi|403178034|ref|XP_003336468.2| hypothetical protein PGTG_18139 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173310|gb|EFP92049.2| hypothetical protein PGTG_18139 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 705
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 54/92 (58%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
Y R+YV S++ +LT++DI+ VF+ FG I+Y L + + KGY F++++ + A+
Sbjct: 449 YARLYVGSLNFNLTDDDIRQVFQPFGDIEYVDLHRDQITGKSKGYAFVQFKNMHDAKNAM 508
Query: 92 SSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
MN F L G+ LRV PP AL ++ P
Sbjct: 509 EKMNGFQLAGRALRVEIKAQPPAALLNATAPG 540
>gi|392597434|gb|EIW86756.1| splicing factor CC1-like protein [Coniophora puteana RWD-64-598
SS2]
Length = 360
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 8/95 (8%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +LTE DIK VFE FG +++ L + S+ R KGY F++Y+ + + A+
Sbjct: 136 QLYVGSLHFNLTEADIKQVFEPFGDLEFVDLHRDSTTGRSKGYAFVQYKRPEDAKMALEQ 195
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
M+ F+L G+ LRV N +H KG A T
Sbjct: 196 MDGFELAGRTLRV-------NTVH-EKGTARYTQQ 222
>gi|328771203|gb|EGF81243.1| hypothetical protein BATDEDRAFT_87866 [Batrachochytrium
dendrobatidis JAM81]
Length = 574
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+RIY+ SI D+ EE+++ F FG IK + + +RHKG+ F+EY+ +++ AI
Sbjct: 186 SRIYIGSIPFDMLEENVRVAFLPFGCIKSISMTLDPATNRHKGFCFLEYDVPDSAHYAIE 245
Query: 93 SMNLFDLGGQYLRVGR 108
MN D+GG+ LRVGR
Sbjct: 246 RMNGLDMGGRALRVGR 261
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 21/123 (17%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL-- 64
++VGRPSN + + + L R++++++ ++E+DI ++FE FG I C L
Sbjct: 257 LRVGRPSNFSNFD--VSTLPQPMPLNTRLFISNVSEIVSEDDITALFETFGKILSCSLIV 314
Query: 65 ----------------QQGSSPHRHKG-YGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107
+ S H H Y +I+YE+ + AI++MN F+LGG+ L VG
Sbjct: 315 PQCFDSSTQDIWMLVHKTDISSHFHLLLYLYIQYESSDSLAIAITTMNNFELGGKQLVVG 374
Query: 108 RAI 110
+ I
Sbjct: 375 KGI 377
>gi|452845447|gb|EME47380.1| hypothetical protein DOTSEDRAFT_69347 [Dothistroma septosporum
NZE10]
Length = 607
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+K+VFE FG +++ +LQ+ R KGYGF+++ + EA+
Sbjct: 319 FHRLYVGNIHFSITEDDLKNVFEPFGELEFVQLQK-EEAGRSKGYGFVQFIDPTQAKEAL 377
Query: 92 SSMNLFDLGGQYLRVG 107
MN F+L G+ +RVG
Sbjct: 378 EKMNGFELAGRPIRVG 393
Score = 35.4 bits (80), Expect = 9.4, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 37/69 (53%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E T++ + ++V + L ++K FE GP+ ++ + R KG G++E++
Sbjct: 212 EPTDDERDRRTVFVQQLAARLRSRELKEFFEQAGPVVDAQIVKDRVSGRSKGVGYVEFKE 271
Query: 84 KQASNEAIS 92
+++ +AI+
Sbjct: 272 EESVQKAIA 280
>gi|353238006|emb|CCA69965.1| related to splicing factor HCC1 [Piriformospora indica DSM 11827]
Length = 543
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H LTEE+IK VFE FG +++ L + + R KGY FI+Y + + A+
Sbjct: 306 QLYVGSLHFQLTEEEIKQVFEPFGELEFVDLHRDPATGRSKGYCFIQYRRPEDAKMALEQ 365
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAMDGGATN 153
M+ F+L G+ LRV N +H AP M ++ A TA+ GG N
Sbjct: 366 MDGFELAGRQLRV-------NTVHEKGVAAPGGVGM----SLRAMGNTAESLDEGGGNLN 414
Query: 154 AV 155
AV
Sbjct: 415 AV 416
>gi|255941952|ref|XP_002561745.1| Pc16g14480 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586368|emb|CAP94118.1| Pc16g14480 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 562
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV ++H +TEED+ +VFE FG +++ +LQ+ + R KGY F+++ + + +A+
Sbjct: 271 FHRLYVGNVHFSITEEDLTNVFEPFGELEFVQLQKDET-GRSKGYAFVQFANPEQARDAL 329
Query: 92 SSMNLFDLGGQYLRVG 107
MN F+L G+ +RVG
Sbjct: 330 EKMNGFELAGRAIRVG 345
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+ + I+V + L +D+ + FE GP+K ++ + R KG G++E++
Sbjct: 164 ELNEDERDRRTIFVQQLAARLRIKDLFTFFEKAGPVKDAQIVKDRVSGRSKGVGYVEFKN 223
Query: 84 KQASNEAISSMNLFDLGGQYL 104
+++ AI L GQ L
Sbjct: 224 EESVAAAIR------LTGQML 238
>gi|449296279|gb|EMC92299.1| hypothetical protein BAUCODRAFT_38330 [Baudoinia compniacensis UAMH
10762]
Length = 634
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+K+VFE FG +++ +LQ+ R KGYGF+++ + EA+
Sbjct: 345 FHRLYVGNIHFSITEDDLKNVFEPFGELEFVQLQK-EEQGRSKGYGFVQFIDPAQAKEAL 403
Query: 92 SSMNLFDLGGQYLRVG 107
MN F+L G+ +RVG
Sbjct: 404 EKMNGFELAGRPIRVG 419
Score = 37.0 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 39/68 (57%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E T++ + ++V + L +++++ FEA GP+ ++ + R KG G++E++
Sbjct: 238 EPTDDERDRRTVFVQQLAARLRTKELQAFFEAVGPVVEAQIVKDRVSGRSKGVGYVEFKD 297
Query: 84 KQASNEAI 91
+++ +AI
Sbjct: 298 EESVQKAI 305
>gi|328859425|gb|EGG08534.1| hypothetical protein MELLADRAFT_84729 [Melampsora larici-populina
98AG31]
Length = 649
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
Y R+YV S++ +LT++D++ VF+ FG I+Y L + + KGY F++++ + A+
Sbjct: 432 YARLYVGSLNFNLTDDDLRQVFQPFGDIEYVDLHRDQITGKSKGYAFVQFKNMHDAKNAM 491
Query: 92 SSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
MN F L G+ LRV PP AL ++ P
Sbjct: 492 EKMNGFQLAGRALRVEIKAQPPAALLNATAPG 523
>gi|195155759|ref|XP_002018768.1| GL25979 [Drosophila persimilis]
gi|194114921|gb|EDW36964.1| GL25979 [Drosophila persimilis]
Length = 289
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H D+TEE ++ +FE FG I +L + +R KGYGFI Y + + +A+
Sbjct: 30 RLYVGSLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQ 89
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 90 LNGFELAGRPMKVG 103
>gi|406866575|gb|EKD19615.1| RNA splicing factor [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 587
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+++VFE FG +++ +LQ+ R +GYGF+++ + EA+
Sbjct: 290 FHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQK-EEQGRSRGYGFVQFRDPSQAREAL 348
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 349 EKMNGFDLAGRPIRVG 364
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 42/82 (51%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
GR ++ + +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 169 GRRASRSPKRETTPPLTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRV 228
Query: 70 PHRHKGYGFIEYETKQASNEAI 91
R KG G++E++ +++ AI
Sbjct: 229 SGRSKGVGYVEFKNEESVPAAI 250
>gi|443695245|gb|ELT96187.1| hypothetical protein CAPTEDRAFT_148377 [Capitella teleta]
Length = 277
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 17/131 (12%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +F+ FG I KL + R +GYGFI + T + + +A+
Sbjct: 2 RLYVGSLHFNITEEMLRGIFDPFGKIDDIKLMKNHETGRSQGYGFITFHTAEDAKKALEQ 61
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGP-APSTSHMPTAAAVAAAAATAKIQAMDGGAT 152
+N F+L G+ ++VG L + GP A T M A +D GAT
Sbjct: 62 LNGFELAGRPMKVGHVT---ERLGETTGPSALDTDDMDRA-------------GIDLGAT 105
Query: 153 NAVGVLSKLSQ 163
+ +++KL++
Sbjct: 106 GRLQLMAKLAE 116
>gi|169599154|ref|XP_001793000.1| hypothetical protein SNOG_02393 [Phaeosphaeria nodorum SN15]
gi|160704547|gb|EAT90605.2| hypothetical protein SNOG_02393 [Phaeosphaeria nodorum SN15]
Length = 544
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG-SSPHRHKGYGFIEYETKQASNEA 90
++R+YV +IH +TE+D+ ++F FG ++ LQ+ ++P R KGYGF+++ + EA
Sbjct: 249 FHRLYVGNIHFSVTEQDLHTIFAPFGELEQVTLQRDETNPARSKGYGFVQFVDPTKAKEA 308
Query: 91 ISSMNLFDLGGQYLRVG 107
++ MN F+L G+ +RVG
Sbjct: 309 LAEMNGFELAGRQIRVG 325
>gi|156363387|ref|XP_001626026.1| predicted protein [Nematostella vectensis]
gi|156212886|gb|EDO33926.1| predicted protein [Nematostella vectensis]
Length = 468
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
R+YV S+H ++TE +K+VFE FG + +L S +R KGYGF+++ +A+ A+
Sbjct: 215 TRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAME 274
Query: 93 SMNLFDLGGQYLRVG 107
MN F+L G+ L++G
Sbjct: 275 QMNGFELAGRPLKIG 289
>gi|453087053|gb|EMF15094.1| splicing factor, CC1-like protein [Mycosphaerella populorum SO2202]
Length = 622
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D+K+VFE FG +++ +LQ+ + R KGYGF+++ + EA+
Sbjct: 334 FHRLYVGNIHFSITEADLKNVFEPFGELEFAQLQKEEN-GRSKGYGFVQFIDPAQAKEAL 392
Query: 92 SSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAMDGGA 151
MN F+L G+ +RVG + SH P+A + + A GG
Sbjct: 393 EKMNGFELAGRPIRVGLGNDKFTTESTQTLLVKFGSHTPSAQKGSQFSGLGGRGAHAGGT 452
Query: 152 TN 153
N
Sbjct: 453 GN 454
>gi|430811054|emb|CCJ31450.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 484
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +LTE+D++ +FE FG +++ +LQ+ R +GYGF++ + QA + A+
Sbjct: 212 FHRLYVGNIHFNLTEDDLRQIFEPFGELEFVQLQKEPDTGRSRGYGFVQ-DPAQARD-AL 269
Query: 92 SSMNLFDLGGQYLRVG 107
MN F+L G+ +RVG
Sbjct: 270 EKMNGFELAGRAIRVG 285
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 39/69 (56%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
++TE+ + ++V + L ++ + FE GP++ ++ + R KG G++E+
Sbjct: 103 KLTEDERDRRTVFVQQLAARLRTRELIAFFEKVGPVRDAQVVKDRVSGRSKGVGYVEFRD 162
Query: 84 KQASNEAIS 92
+++ ++AI+
Sbjct: 163 EESVHKAIN 171
>gi|213410431|ref|XP_002175985.1| RNA-binding protein rsd1 [Schizosaccharomyces japonicus yFS275]
gi|212004032|gb|EEB09692.1| RNA-binding protein rsd1 [Schizosaccharomyces japonicus yFS275]
Length = 540
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+ V +IH ++T+ED+K++FE FG ++Y +LQ+ +R KG+GFI++ + A+
Sbjct: 316 FHRLCVGNIHFNITDEDLKAIFEPFGELEYVRLQRDDQ-NRSKGFGFIQFRDPLCARIAL 374
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ LRVG
Sbjct: 375 EKMNGFDLAGRQLRVG 390
>gi|425770690|gb|EKV09156.1| RNA splicing factor (Pad-1), putative [Penicillium digitatum Pd1]
gi|425772037|gb|EKV10463.1| RNA splicing factor (Pad-1), putative [Penicillium digitatum PHI26]
Length = 556
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV ++H +TE+D+ +VFE FG +++ +LQ+ + R KGY F+++ + + +A+
Sbjct: 264 FHRLYVGNVHFSITEDDLTNVFEPFGELEFVQLQKDET-GRSKGYAFVQFANPEQARDAL 322
Query: 92 SSMNLFDLGGQYLRVG 107
MN F+L G+ +RVG
Sbjct: 323 EKMNGFELAGRAIRVG 338
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+ + I+V + L +D+ + FE GP+K ++ + R KG G++E++
Sbjct: 157 ELNEDERDRRTIFVQQLAARLRIKDLFTFFEKAGPVKDAQIVKDRVSGRSKGVGYVEFKN 216
Query: 84 KQASNEAISSMNLFDLGGQYL 104
+++ AI L GQ L
Sbjct: 217 EESVAAAIR------LTGQML 231
>gi|393218616|gb|EJD04104.1| splicing factor, CC1-like protein [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV S+H +LTE DIK VFE FG + + L + S+ R KGY FI Y+ + + A+ M
Sbjct: 240 LYVGSLHFNLTESDIKQVFEPFGELDFVDLHKDSATGRSKGYAFIHYKRAEDAKMALEQM 299
Query: 95 NLFDLGGQYLRV 106
F+L G+ LRV
Sbjct: 300 EGFELAGRTLRV 311
>gi|295664082|ref|XP_002792593.1| RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278707|gb|EEH34273.1| RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 596
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE D++ VFE FG + + +LQ+ R +GYGF+++ + EA+
Sbjct: 300 FHRLYVGNIHFSITESDLQKVFEPFGELDFVQLQK-EEGGRSRGYGFVQFRDPNQAREAL 358
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 359 EKMNGFDLAGRPIRVG 374
Score = 38.9 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
GR S P+ Q +TE+ + ++V + L +++ + FE GP+K ++ +
Sbjct: 183 GRRSRTPEPQ-----LTEDERDRRTVFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRV 237
Query: 70 PHRHKGYGFIEYETKQASNEAI 91
R KG G++E++ +++ AI
Sbjct: 238 SGRSKGVGYVEFKDEESVPLAI 259
>gi|291403539|ref|XP_002718108.1| PREDICTED: RNA binding motif protein 23 isoform 1 [Oryctolagus
cuniculus]
Length = 410
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + A+
Sbjct: 232 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECGRRALEQ 291
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +RVG P+
Sbjct: 292 LNGFELAGRPMRVGHVTERPDG 313
>gi|291403543|ref|XP_002718110.1| PREDICTED: RNA binding motif protein 23 isoform 3 [Oryctolagus
cuniculus]
Length = 428
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + A+
Sbjct: 250 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECGRRALEQ 309
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +RVG P+
Sbjct: 310 LNGFELAGRPMRVGHVTERPDG 331
>gi|291403541|ref|XP_002718109.1| PREDICTED: RNA binding motif protein 23 isoform 2 [Oryctolagus
cuniculus]
Length = 444
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + A+
Sbjct: 266 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECGRRALEQ 325
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +RVG P+
Sbjct: 326 LNGFELAGRPMRVGHVTERPDG 347
>gi|388852481|emb|CCF53883.1| related to RNA-binding region containing protein 2 [Ustilago
hordei]
Length = 678
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H LT+E++K+VFE FG I+Y L + + KG+ FI+++ + + +A+
Sbjct: 428 RLYVGSLHFSLTDENVKAVFEPFGEIEYVDLHREPGTGKSKGFCFIQFKHAEDAKKALEQ 487
Query: 94 MNLFDLGGQYLRVG 107
MN F+L G+ +RVG
Sbjct: 488 MNGFELAGRAIRVG 501
>gi|301781272|ref|XP_002926047.1| PREDICTED: probable RNA-binding protein 23-like isoform 3
[Ailuropoda melanoleuca]
Length = 412
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 232 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 291
Query: 94 MNLFDLGGQYLRVGR 108
+N F+L G+ +RVG+
Sbjct: 292 LNGFELAGRPMRVGQ 306
>gi|221044666|dbj|BAH14010.1| unnamed protein product [Homo sapiens]
Length = 270
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 153
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 154 LNGFELAGRPMRVG 167
>gi|209154564|gb|ACI33514.1| RNA-binding protein 39 [Salmo salar]
Length = 525
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 17 QAQSVIDEITEEAKLYN----------RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
QA V+ E A + N R+YV S+H ++TEE ++ +FE FG I+ +L
Sbjct: 223 QASQVMAEKNRAAAMANNLQKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGKIESIQLMM 282
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107
S R KGYGFI + + + +A+ +N F+L G+ ++VG
Sbjct: 283 DSETGRSKGYGFITFSDTECAKKALDQLNGFELAGRPMKVG 323
>gi|119586631|gb|EAW66227.1| RNA binding motif protein 23, isoform CRA_f [Homo sapiens]
Length = 269
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 153
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 154 LNGFELAGRPMRVG 167
>gi|149756182|ref|XP_001494921.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Equus
caballus]
Length = 412
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 233 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 292
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 293 LNGFELAGRPMRVG 306
>gi|281343373|gb|EFB18957.1| hypothetical protein PANDA_015655 [Ailuropoda melanoleuca]
Length = 369
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 189 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 248
Query: 94 MNLFDLGGQYLRVGR 108
+N F+L G+ +RVG+
Sbjct: 249 LNGFELAGRPMRVGQ 263
>gi|443896055|dbj|GAC73399.1| transcriptional coactivator CAPER [Pseudozyma antarctica T-34]
Length = 662
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H LT+E++K+VFE FG I+Y L + + KG+ FI+++ + +A +
Sbjct: 415 RLYVGSLHFSLTDENVKAVFEPFGEIEYVDLHREPGTGKSKGFCFIQFKHADDARKAHEA 474
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGPAP---STSHMP 130
MN F+L G+ +RVG + GP P S H+P
Sbjct: 475 MNGFELAGRAIRVGNVNAKGSGSSYMGGPGPNSQSGGHLP 514
>gi|410961884|ref|XP_003987508.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Felis catus]
Length = 411
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 231 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 290
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 291 LNGFELAGRPMRVG 304
>gi|452002199|gb|EMD94657.1| hypothetical protein COCHEDRAFT_1092247 [Cochliobolus
heterostrophus C5]
Length = 572
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS-SPHRHKGYGFIEYETKQASNEA 90
++R+YV +IH +TE+D++ +FE FG ++ LQ+ +P R KGYGF+++ + A
Sbjct: 277 FHRLYVGNIHFSVTEKDLQEIFEPFGELEQVILQRDEMNPGRSKGYGFVQFVDPSHAKNA 336
Query: 91 ISSMNLFDLGGQYLRVG 107
++ MN F+L G+ +RVG
Sbjct: 337 LAEMNGFELAGRQIRVG 353
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
EITE+ + I+V I +++ FE GP+ ++ + R KG G++E++
Sbjct: 169 EITEDDRDKRTIFVQQISQRAETRHLRAFFERVGPVVEAQIVKDRVTGRSKGVGYVEFKD 228
Query: 84 KQASNEAISSMNLFDLGGQYLR 105
+++ +A+ +L GQ L+
Sbjct: 229 EESVPQAL------ELTGQKLK 244
>gi|301781270|ref|XP_002926046.1| PREDICTED: probable RNA-binding protein 23-like isoform 2
[Ailuropoda melanoleuca]
Length = 430
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 250 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 309
Query: 94 MNLFDLGGQYLRVGR 108
+N F+L G+ +RVG+
Sbjct: 310 LNGFELAGRPMRVGQ 324
>gi|345804022|ref|XP_003435135.1| PREDICTED: probable RNA-binding protein 23 [Canis lupus familiaris]
Length = 411
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 231 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 290
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 291 LNGFELAGRPMRVG 304
>gi|149756180|ref|XP_001494897.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Equus
caballus]
Length = 430
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 311 LNGFELAGRPMRVG 324
>gi|10880789|gb|AAG24388.1|AF275678_1 PP239 protein [Homo sapiens]
Length = 418
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 242 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 301
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 302 LNGFELAGRPMRVG 315
>gi|301781268|ref|XP_002926045.1| PREDICTED: probable RNA-binding protein 23-like isoform 1
[Ailuropoda melanoleuca]
Length = 446
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 266 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 325
Query: 94 MNLFDLGGQYLRVGR 108
+N F+L G+ +RVG+
Sbjct: 326 LNGFELAGRPMRVGQ 340
>gi|410961880|ref|XP_003987506.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Felis catus]
Length = 445
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 324
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 325 LNGFELAGRPMRVG 338
>gi|170083917|ref|XP_001873182.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650734|gb|EDR14974.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 448
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV S+H +LTE DIK VFE FG +++ L + R KGY F++Y+ + + A+ M
Sbjct: 224 LYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRSEDARMALEQM 283
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAM 147
F+L G+ LRV N +H KG A T A A QA+
Sbjct: 284 EGFELAGRTLRV-------NTVH-EKGTARYTQQDSLDEAGGGNLNAASRQAL 328
>gi|149756178|ref|XP_001494868.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Equus
caballus]
Length = 446
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 267 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 326
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 327 LNGFELAGRPMRVG 340
>gi|410961882|ref|XP_003987507.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Felis catus]
Length = 429
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 249 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 308
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 309 LNGFELAGRPMRVG 322
>gi|73962355|ref|XP_848788.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Canis lupus
familiaris]
Length = 429
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 249 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 308
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 309 LNGFELAGRPMRVG 322
>gi|73962357|ref|XP_537365.2| PREDICTED: probable RNA-binding protein 23 isoform 1 [Canis lupus
familiaris]
Length = 445
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 324
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 325 LNGFELAGRPMRVG 338
>gi|426201409|gb|EKV51332.1| hypothetical protein AGABI2DRAFT_189584 [Agaricus bisporus var.
bisporus H97]
Length = 563
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV S+H +LTE DIK VFE FG +++ L + + R KGY F++Y+ + + A+ M
Sbjct: 339 LYVGSLHFNLTESDIKQVFEVFGELEFVDLHRDAMTGRSKGYAFVQYKRAEDARMALQQM 398
Query: 95 NLFDLGGQYLRV 106
F+L G+ LRV
Sbjct: 399 EGFELAGRTLRV 410
>gi|409083550|gb|EKM83907.1| hypothetical protein AGABI1DRAFT_110515 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 563
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV S+H +LTE DIK VFE FG +++ L + + R KGY F++Y+ + + A+ M
Sbjct: 339 LYVGSLHFNLTESDIKQVFEVFGELEFVDLHRDAMTGRSKGYAFVQYKRAEDARMALQQM 398
Query: 95 NLFDLGGQYLRV 106
F+L G+ LRV
Sbjct: 399 EGFELAGRTLRV 410
>gi|355715684|gb|AES05403.1| RNA binding motif protein 39 [Mustela putorius furo]
Length = 271
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 131 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 190
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 191 LNGFELAGRPMKVG 204
>gi|148226721|ref|NP_001086950.1| RNA binding motif protein 39 [Xenopus laevis]
gi|50414893|gb|AAH77813.1| Rnpc2-prov protein [Xenopus laevis]
Length = 540
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 250 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 309
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSS 119
+N F+L G+ ++VG +A ++S
Sbjct: 310 LNGFELAGRPMKVGHVTERTDASNAS 335
>gi|410899827|ref|XP_003963398.1| PREDICTED: RNA-binding protein 39-like [Takifugu rubripes]
Length = 500
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 230 RLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 289
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 290 LNGFELAGRPMKVG 303
>gi|328865553|gb|EGG13939.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 949
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 56/89 (62%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
NR+YV S+ + TE+ IK++F + G + C L+ RH GYGFI+Y+ +++ +AIS
Sbjct: 742 NRVYVGSVPWNATEDQIKTIFSSIGNVVSCSLKPNLETGRHMGYGFIDYDNPKSAEDAIS 801
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSSKG 121
+ N +D+ G+ L+V + + ++++ G
Sbjct: 802 TFNGYDINGRQLKVRKPVRNAPKVNNNDG 830
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNE 89
++ +RIY+ +IH +LTE DI + F FGPIK L + + R +G+ FIEY +A+
Sbjct: 600 EIQSRIYIGNIHFNLTEADIVAAFSPFGPIKSLSLSKDPATGRSRGFCFIEYTYPEAAIN 659
Query: 90 AISSMNLFDLGGQYLRVGRAITP 112
AI +MN + G+ ++V + P
Sbjct: 660 AIQNMNQKTISGRQIKVRQPSIP 682
>gi|431907193|gb|ELK11259.1| Putative RNA-binding protein 23 [Pteropus alecto]
Length = 914
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 244 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSESECARRALEQ 303
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 304 LNGFELAGRPMRVG 317
>gi|428182175|gb|EKX51036.1| hypothetical protein GUITHDRAFT_134574 [Guillardia theta CCMP2712]
Length = 458
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
NR+YV S+H DL E D++++F+ FGPIK ++ + + KGY FIEY ++
Sbjct: 98 NRLYVGSLHFDLKEADVRAIFQPFGPIKTIEMSYEPTTGKSKGYAFIEYMNDAQADACEK 157
Query: 93 SMNLFDLGGQYLRVGR 108
+M+ F + G+ ++VGR
Sbjct: 158 AMDGFMIAGRPIKVGR 173
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIY+ S+ D+ E ++K +F+ FG IK + +HKGYGFIEYE + +AI +
Sbjct: 232 RIYIGSVLFDVKESEVKQIFQVFGSIKQISMIPNPENGKHKGYGFIEYEKHDDAVQAIQA 291
Query: 94 MNLFDLGGQYLRVGRAITP 112
MN F L G+ L+ + P
Sbjct: 292 MNGFQLAGRPLKEDKTSNP 310
>gi|397473315|ref|XP_003808160.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Pan paniscus]
Length = 408
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 230 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 290 LNGFELAGRPMRVG 303
>gi|355778434|gb|EHH63470.1| hypothetical protein EGM_16442, partial [Macaca fascicularis]
Length = 366
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 189 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 248
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 249 LNGFELAGRPMRVG 262
>gi|426376374|ref|XP_004054976.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Gorilla
gorilla gorilla]
Length = 403
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 230 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 290 LNGFELAGRPMRVG 303
>gi|402217675|gb|EJT97754.1| splicing factor CC1-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 640
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV S+H +LTE D+K VFE FG +++ L + R KG+ F++Y+ + + A+ SM
Sbjct: 411 LYVGSLHFNLTESDVKQVFEPFGELEFVDLHRDPLTGRSKGFAFVQYKRSEDARMALQSM 470
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
+ FDL G+ L+V N +H G
Sbjct: 471 DGFDLAGRQLKV-------NTVHEKGG 490
>gi|260834973|ref|XP_002612484.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
gi|229297861|gb|EEN68493.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
Length = 466
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + S R KGYGFI + + + +A+
Sbjct: 145 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLMKDSETGRSKGYGFITFHDAECAKKALEQ 204
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 205 LNGFELAGRPMKVG 218
>gi|62857615|ref|NP_001016788.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|62201342|gb|AAH93451.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|89273890|emb|CAJ83908.1| RNA-binding region (RNP1, RRM) containing 2 [Xenopus (Silurana)
tropicalis]
Length = 542
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 252 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 311
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSS 119
+N F+L G+ ++VG +A ++S
Sbjct: 312 LNGFELAGRPMKVGHVTERTDASNAS 337
>gi|47212427|emb|CAF93583.1| unnamed protein product [Tetraodon nigroviridis]
Length = 500
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 232 RLYVGSLHFNITEEMLRGIFEPFGRIENIQLMVDSDTGRSKGYGFITFADAECAKKALEQ 291
Query: 94 MNLFDLGGQYLRVGR------AITPP 113
+N F+L G+ ++VG A+ PP
Sbjct: 292 LNGFELAGRPMKVGHVTDRSDAVAPP 317
>gi|449265754|gb|EMC76900.1| RNA-binding protein 39, partial [Columba livia]
Length = 423
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 152 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 211
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 212 LNGFELAGRPMKVG 225
>gi|410055060|ref|XP_003953766.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391517|ref|XP_004062119.1| PREDICTED: RNA-binding protein 39 isoform 6 [Gorilla gorilla
gorilla]
gi|20988961|gb|AAH30493.1| Rbm39 protein [Mus musculus]
gi|34364789|emb|CAE45833.1| hypothetical protein [Homo sapiens]
gi|111598490|gb|AAH82607.1| Rbm39 protein [Mus musculus]
gi|119596570|gb|EAW76164.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_d [Homo
sapiens]
gi|149030835|gb|EDL85862.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_g [Rattus
norvegicus]
Length = 367
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 154 LNGFELAGRPMKVG 167
>gi|47223170|emb|CAG11305.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 245 RLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 304
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 305 LNGFELAGRPMKVG 318
>gi|440906315|gb|ELR56591.1| Putative RNA-binding protein 23 [Bos grunniens mutus]
Length = 463
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ + E FG I L + S R KGYGFI + + + A+
Sbjct: 279 RLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQ 338
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +R+G P+
Sbjct: 339 LNGFELAGRPMRIGHVTERPDG 360
>gi|348503003|ref|XP_003439056.1| PREDICTED: RNA-binding protein 39-like [Oreochromis niloticus]
Length = 498
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 228 RLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 287
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 288 LNGFELAGRPMKVG 301
>gi|31873732|emb|CAD97833.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 154 LNGFELAGRPMKVG 167
>gi|7022544|dbj|BAA91638.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 230 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 290 LNGFELAGRPMRVG 303
>gi|410055058|ref|XP_003316934.2| PREDICTED: uncharacterized protein LOC458443 isoform 4 [Pan
troglodytes]
gi|410055062|ref|XP_003953767.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391515|ref|XP_004062118.1| PREDICTED: RNA-binding protein 39 isoform 5 [Gorilla gorilla
gorilla]
gi|426391519|ref|XP_004062120.1| PREDICTED: RNA-binding protein 39 isoform 7 [Gorilla gorilla
gorilla]
gi|119596566|gb|EAW76160.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
gi|119596571|gb|EAW76165.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
Length = 373
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 154 LNGFELAGRPMKVG 167
>gi|261858408|dbj|BAI45726.1| RNA binding motif protein 23 [synthetic construct]
Length = 406
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 230 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 290 LNGFELAGRPMRVG 303
>gi|197102126|ref|NP_001124751.1| probable RNA-binding protein 23 [Pongo abelii]
gi|55725769|emb|CAH89665.1| hypothetical protein [Pongo abelii]
Length = 423
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|34365067|emb|CAE45890.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 154 LNGFELAGRPMKVG 167
>gi|392571432|gb|EIW64604.1| splicing factor CC1-like protein [Trametes versicolor FP-101664
SS1]
Length = 344
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +LTE DIK VFE FG +++ L + R KGY F++Y+ + + A+
Sbjct: 119 QLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRAEDAKMALEQ 178
Query: 94 MNLFDLGGQYLRV 106
M F+L G+ LRV
Sbjct: 179 MEGFELAGRTLRV 191
>gi|332222974|ref|XP_003260644.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Nomascus
leucogenys]
Length = 426
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H D+TEE ++ +FE FG I +L + +R KGYGFI Y + + +A+
Sbjct: 366 RLYVGSLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQ 425
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 426 LNGFELAGRPMKVG 439
>gi|116734698|ref|NP_001070820.1| probable RNA-binding protein 23 isoform 3 [Homo sapiens]
gi|119586628|gb|EAW66224.1| RNA binding motif protein 23, isoform CRA_c [Homo sapiens]
Length = 405
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 230 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 290 LNGFELAGRPMRVG 303
>gi|119586630|gb|EAW66226.1| RNA binding motif protein 23, isoform CRA_e [Homo sapiens]
Length = 449
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 274 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 333
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 334 LNGFELAGRPMRVG 347
>gi|147900472|ref|NP_001086350.1| MGC81970 protein [Xenopus laevis]
gi|49522239|gb|AAH75146.1| MGC81970 protein [Xenopus laevis]
Length = 512
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 224 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 283
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSS 119
+N F+L G+ ++VG +A ++S
Sbjct: 284 LNGFELAGRPMKVGHVTERTDASNAS 309
>gi|387539270|gb|AFJ70262.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 423
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|302695543|ref|XP_003037450.1| hypothetical protein SCHCODRAFT_80935 [Schizophyllum commune H4-8]
gi|300111147|gb|EFJ02548.1| hypothetical protein SCHCODRAFT_80935 [Schizophyllum commune H4-8]
Length = 409
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +LTE DIK VFE FG +++ L + + R KGY F++Y+ + + A+
Sbjct: 183 QLYVGSLHFNLTEADIKQVFEPFGELEFVDLHRDPTTGRSKGYAFVQYKRAEDARMAMEQ 242
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKG 121
M F+L G+ L+V N +H G
Sbjct: 243 MEGFELAGRQLKV-------NTVHDKGG 263
>gi|296483628|tpg|DAA25743.1| TPA: RNA binding motif protein 23 [Bos taurus]
Length = 463
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ + E FG I L + S R KGYGFI + + + A+
Sbjct: 279 RLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQ 338
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +R+G P+
Sbjct: 339 LNGFELAGRPMRIGHVTERPDG 360
>gi|13278367|gb|AAH04000.1| Rbm39 protein [Mus musculus]
Length = 429
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 150 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 209
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 210 LNGFELAGRPMKVG 223
>gi|332222976|ref|XP_003260645.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Nomascus
leucogenys]
Length = 442
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|344298617|ref|XP_003420988.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Loxodonta
africana]
Length = 416
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 233 RLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECARRALEQ 292
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +RVG A P+
Sbjct: 293 LNGFELAGRPMRVGHATERPDG 314
>gi|221041852|dbj|BAH12603.1| unnamed protein product [Homo sapiens]
Length = 337
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSS 119
+N F+L G+ ++VG +A +S
Sbjct: 154 LNGFELAGRPMKVGHVTERTDASSAS 179
>gi|380814242|gb|AFE78995.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
gi|383419605|gb|AFH33016.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|397473311|ref|XP_003808158.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Pan paniscus]
Length = 426
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|426376370|ref|XP_004054974.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Gorilla
gorilla gorilla]
Length = 421
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|384947948|gb|AFI37579.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|115497272|ref|NP_001069104.1| probable RNA-binding protein 23 [Bos taurus]
gi|113911797|gb|AAI22594.1| RNA binding motif protein 23 [Bos taurus]
Length = 463
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ + E FG I L + S R KGYGFI + + + A+
Sbjct: 279 RLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQ 338
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +R+G P+
Sbjct: 339 LNGFELAGRPMRIGHVTERPDG 360
>gi|388490330|ref|NP_001253303.1| probable RNA-binding protein 23 [Macaca mulatta]
gi|380814244|gb|AFE78996.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
gi|384947950|gb|AFI37580.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|383419607|gb|AFH33017.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|387539272|gb|AFJ70263.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 439
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|355693134|gb|EHH27737.1| hypothetical protein EGK_18008 [Macaca mulatta]
Length = 441
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|444728803|gb|ELW69245.1| putative RNA-binding protein 23 [Tupaia chinensis]
Length = 450
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 252 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 311
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 312 LNGFELAGRPMRVG 325
>gi|344298613|ref|XP_003420986.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Loxodonta
africana]
Length = 434
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECARRALEQ 310
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +RVG A P+
Sbjct: 311 LNGFELAGRPMRVGHATERPDG 332
>gi|335310533|ref|XP_003362077.1| PREDICTED: probable RNA-binding protein 23 [Sus scrofa]
Length = 443
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 266 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 325
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +R+G
Sbjct: 326 LNGFELAGRPMRIG 339
>gi|426376372|ref|XP_004054975.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Gorilla
gorilla gorilla]
Length = 437
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|427792527|gb|JAA61715.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 497
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE +K +FE FG I +L + +R KGYGFI + + + +A+
Sbjct: 241 RLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQ 300
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 301 LNGFELAGRPMKVG 314
>gi|432865706|ref|XP_004070573.1| PREDICTED: RNA-binding protein 39-like [Oryzias latipes]
Length = 516
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 247 RLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 306
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 307 LNGFELAGRPMKVG 320
>gi|344298615|ref|XP_003420987.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Loxodonta
africana]
Length = 450
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 267 RLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECARRALEQ 326
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +RVG A P+
Sbjct: 327 LNGFELAGRPMRVGHATERPDG 348
>gi|119596573|gb|EAW76167.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Homo
sapiens]
Length = 423
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|126291198|ref|XP_001371677.1| PREDICTED: RNA-binding protein 39 isoform 2 [Monodelphis domestica]
Length = 533
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|67624203|ref|XP_668384.1| RNA-binding protein SiahBP [Cryptosporidium hominis TU502]
gi|54659576|gb|EAL38146.1| RNA-binding protein SiahBP [Cryptosporidium hominis]
Length = 615
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG-SSPHRHKGYGFIEYETKQASNEAI 91
NRIY+ S+ T +D++ +F+ FG I C+L P H+GYGFIE+ T + AI
Sbjct: 346 NRIYIGSVPYSFTTDDLRHIFKTFGVILSCQLIPSIEKPGTHRGYGFIEFGTADQAKLAI 405
Query: 92 SSMNLFDLGGQYLRVGRA 109
+MN F++GG+ L+V A
Sbjct: 406 ETMNGFEVGGKQLKVNVA 423
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIYV S+ L E D+K VF +FGPI + + +R KG+ FIEY +++++ A+++
Sbjct: 213 RIYVGSLDYSLNEADLKQVFGSFGPIVNIDMPREG--NRSKGFCFIEYTSQESAEMALAT 270
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSS 119
MN F L G+ +RVGR P NA S+
Sbjct: 271 MNRFVLKGRPIRVGR---PTNAASSN 293
>gi|12803481|gb|AAH02566.1| RNA binding motif protein 23 [Homo sapiens]
gi|189055004|dbj|BAG37988.1| unnamed protein product [Homo sapiens]
gi|312151810|gb|ADQ32417.1| RNA binding motif protein 23 [synthetic construct]
Length = 424
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|66362264|ref|XP_628096.1| Ro ribonucleoprotein-binding protein 1, RNA binding protein with 3x
RRM domains [Cryptosporidium parvum Iowa II]
gi|46227417|gb|EAK88352.1| Ro ribonucleoprotein-binding protein 1, RNA binding protein with 3x
RRM domains [Cryptosporidium parvum Iowa II]
gi|323508937|dbj|BAJ77361.1| cgd1_2730 [Cryptosporidium parvum]
gi|323510323|dbj|BAJ78055.1| cgd1_2730 [Cryptosporidium parvum]
Length = 693
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG-SSPHRHKGYGFIEYETKQASNEAI 91
NRIY+ S+ T +D++ +F+ FG I C+L P H+GYGFIE+ T + AI
Sbjct: 424 NRIYIGSVPYSFTTDDLRHIFKTFGVILSCQLIPSIEKPGTHRGYGFIEFGTADQAKLAI 483
Query: 92 SSMNLFDLGGQYLRVGRA 109
+MN F++GG+ L+V A
Sbjct: 484 ETMNGFEVGGKQLKVNVA 501
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKL-QQGSSPHRHKGYGFIEYETKQASNEAIS 92
RIYV S+ L E D+K VF +FGPI + ++G +R KG+ FIEY +++++ A++
Sbjct: 291 RIYVGSLDYSLNEADLKQVFGSFGPIVNIDMPREG---NRSKGFCFIEYTSQESAEMALA 347
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSS 119
+MN F L G+ +RVGR P NA S+
Sbjct: 348 TMNRFVLKGRPIRVGR---PTNAASSN 371
>gi|193785136|dbj|BAG54289.1| unnamed protein product [Homo sapiens]
Length = 506
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 227 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 286
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 287 LNGFELAGRPMKVG 300
>gi|126291195|ref|XP_001371651.1| PREDICTED: RNA-binding protein 39 isoform 1 [Monodelphis domestica]
Length = 524
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|327271618|ref|XP_003220584.1| PREDICTED: RNA-binding protein 39-like [Anolis carolinensis]
Length = 578
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 307 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 366
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 367 LNGFELAGRPMKVG 380
>gi|119586634|gb|EAW66230.1| RNA binding motif protein 23, isoform CRA_h [Homo sapiens]
Length = 467
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 292 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 351
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 352 LNGFELAGRPMRVG 365
>gi|116734694|ref|NP_060577.3| probable RNA-binding protein 23 isoform 2 [Homo sapiens]
gi|18848317|gb|AAH24208.1| RNA binding motif protein 23 [Homo sapiens]
gi|119586627|gb|EAW66223.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
gi|119586633|gb|EAW66229.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
Length = 423
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|349604477|gb|AEQ00017.1| RNA-binding protein 39-like protein, partial [Equus caballus]
Length = 374
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 234 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 293
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 294 LNGFELAGRPMKVG 307
>gi|190402270|gb|ACE77680.1| RNA binding motif protein 39 isoform a (predicted) [Sorex araneus]
Length = 435
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|296199709|ref|XP_002747282.1| PREDICTED: RNA-binding protein 39 isoform 5 [Callithrix jacchus]
Length = 504
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 225 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 284
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 285 LNGFELAGRPMKVG 298
>gi|194386036|dbj|BAG59582.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 224 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 283
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 284 LNGFELAGRPMKVG 297
>gi|427794973|gb|JAA62938.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 509
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE +K +FE FG I +L + +R KGYGFI + + + +A+
Sbjct: 253 RLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQ 312
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 313 LNGFELAGRPMKVG 326
>gi|397473313|ref|XP_003808159.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Pan paniscus]
Length = 442
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|395505312|ref|XP_003756986.1| PREDICTED: RNA-binding protein 39 [Sarcophilus harrisii]
Length = 557
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 284 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 343
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 344 LNGFELAGRPMKVG 357
>gi|390604396|gb|EIN13787.1| splicing factor CC1-like protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 433
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +LTE DIK VFE FG +++ L + R KGY FI+Y+ + + A+
Sbjct: 209 QLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYCFIQYKRAEDAKMALEQ 268
Query: 94 MNLFDLGGQYLRV 106
M F+L G+ LRV
Sbjct: 269 MEGFELAGRTLRV 281
>gi|119586626|gb|EAW66222.1| RNA binding motif protein 23, isoform CRA_a [Homo sapiens]
Length = 483
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 308 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 367
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 368 LNGFELAGRPMRVG 381
>gi|118100450|ref|XP_425690.2| PREDICTED: RNA-binding protein 39 [Gallus gallus]
gi|363741409|ref|XP_003642487.1| PREDICTED: RNA-binding protein 39-like [Gallus gallus]
Length = 522
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|426241414|ref|XP_004014586.1| PREDICTED: RNA-binding protein 39 isoform 7 [Ovis aries]
Length = 367
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 154 LNGFELTGRPMKVG 167
>gi|224077247|ref|XP_002192236.1| PREDICTED: RNA-binding protein 39 [Taeniopygia guttata]
Length = 522
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|403281374|ref|XP_003932163.1| PREDICTED: RNA-binding protein 39 [Saimiri boliviensis boliviensis]
Length = 502
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|281346065|gb|EFB21649.1| hypothetical protein PANDA_004543 [Ailuropoda melanoleuca]
Length = 497
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 218 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 277
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 278 LNGFELAGRPMKVG 291
>gi|116734696|ref|NP_001070819.1| probable RNA-binding protein 23 isoform 1 [Homo sapiens]
gi|34925229|sp|Q86U06.1|RBM23_HUMAN RecName: Full=Probable RNA-binding protein 23; AltName:
Full=RNA-binding motif protein 23; AltName:
Full=RNA-binding region-containing protein 4; AltName:
Full=Splicing factor SF2
gi|28071058|emb|CAD61910.1| unnamed protein product [Homo sapiens]
gi|119586629|gb|EAW66225.1| RNA binding motif protein 23, isoform CRA_d [Homo sapiens]
Length = 439
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|336176066|ref|NP_001229529.1| RNA-binding protein 39 isoform d [Homo sapiens]
gi|73991836|ref|XP_865202.1| PREDICTED: RNA-binding protein 39 isoform 16 [Canis lupus
familiaris]
gi|296199705|ref|XP_002747280.1| PREDICTED: RNA-binding protein 39 isoform 3 [Callithrix jacchus]
gi|332858230|ref|XP_003316933.1| PREDICTED: uncharacterized protein LOC458443 isoform 3 [Pan
troglodytes]
gi|335304749|ref|XP_003360015.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719245|ref|XP_003363967.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|426391513|ref|XP_004062117.1| PREDICTED: RNA-binding protein 39 isoform 4 [Gorilla gorilla
gorilla]
Length = 502
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 229 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 288
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 289 LNGFELAGRPMKVG 302
>gi|336176064|ref|NP_001229528.1| RNA-binding protein 39 isoform c [Homo sapiens]
gi|296199707|ref|XP_002747281.1| PREDICTED: RNA-binding protein 39 isoform 4 [Callithrix jacchus]
gi|332858228|ref|XP_003316932.1| PREDICTED: uncharacterized protein LOC458443 isoform 2 [Pan
troglodytes]
gi|335304745|ref|XP_003360013.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719242|ref|XP_003363966.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|345789990|ref|XP_003433300.1| PREDICTED: RNA-binding protein 39 [Canis lupus familiaris]
gi|426391511|ref|XP_004062116.1| PREDICTED: RNA-binding protein 39 isoform 3 [Gorilla gorilla
gorilla]
gi|124297482|gb|AAI31544.1| RBM39 protein [Homo sapiens]
gi|194389138|dbj|BAG61586.1| unnamed protein product [Homo sapiens]
Length = 508
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 229 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 288
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 289 LNGFELAGRPMKVG 302
>gi|119596572|gb|EAW76166.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_e [Homo
sapiens]
Length = 445
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|417411155|gb|JAA52027.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 491
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 218 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 277
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 278 LNGFELAGRPMKVG 291
>gi|52545994|emb|CAH18281.2| hypothetical protein [Homo sapiens]
Length = 513
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 234 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 293
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 294 LNGFELAGRPMKVG 307
>gi|417411216|gb|JAA52053.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 499
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 220 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 279
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 280 LNGFELAGRPMKVG 293
>gi|426241412|ref|XP_004014585.1| PREDICTED: RNA-binding protein 39 isoform 6 [Ovis aries]
gi|426241416|ref|XP_004014587.1| PREDICTED: RNA-binding protein 39 isoform 8 [Ovis aries]
Length = 373
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 154 LNGFELTGRPMKVG 167
>gi|4757926|ref|NP_004893.1| RNA-binding protein 39 isoform b [Homo sapiens]
gi|197097940|ref|NP_001125339.1| RNA-binding protein 39 [Pongo abelii]
gi|149733223|ref|XP_001501876.1| PREDICTED: RNA-binding protein 39 isoform 2 [Equus caballus]
gi|194044529|ref|XP_001925282.1| PREDICTED: RNA-binding protein 39 isoform 2 [Sus scrofa]
gi|296199701|ref|XP_002747278.1| PREDICTED: RNA-binding protein 39 isoform 1 [Callithrix jacchus]
gi|301762104|ref|XP_002916459.1| PREDICTED: RNA-binding protein 39-like [Ailuropoda melanoleuca]
gi|332858226|ref|XP_514808.3| PREDICTED: uncharacterized protein LOC458443 isoform 5 [Pan
troglodytes]
gi|344279921|ref|XP_003411734.1| PREDICTED: RNA-binding protein 39 isoform 2 [Loxodonta africana]
gi|345789988|ref|XP_865124.2| PREDICTED: RNA-binding protein 39 isoform 12 [Canis lupus
familiaris]
gi|354477984|ref|XP_003501197.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Cricetulus
griseus]
gi|426391509|ref|XP_004062115.1| PREDICTED: RNA-binding protein 39 isoform 2 [Gorilla gorilla
gorilla]
gi|75070825|sp|Q5RC80.1|RBM39_PONAB RecName: Full=RNA-binding protein 39; AltName: Full=RNA-binding
motif protein 39
gi|405192|gb|AAA16346.1| splicing factor [Homo sapiens]
gi|55727753|emb|CAH90627.1| hypothetical protein [Pongo abelii]
gi|119596568|gb|EAW76162.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|119596569|gb|EAW76163.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|296480931|tpg|DAA23046.1| TPA: RNA binding motif protein 39 [Bos taurus]
gi|307686241|dbj|BAJ21051.1| RNA binding motif protein 39 [synthetic construct]
gi|344246681|gb|EGW02785.1| RNA-binding protein 39 [Cricetulus griseus]
gi|380783275|gb|AFE63513.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|383408127|gb|AFH27277.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|384939256|gb|AFI33233.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|410218748|gb|JAA06593.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255438|gb|JAA15686.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292902|gb|JAA25051.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350855|gb|JAA42031.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350863|gb|JAA42035.1| RNA binding motif protein 39 [Pan troglodytes]
Length = 524
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|355784531|gb|EHH65382.1| RNA-binding motif protein 39 [Macaca fascicularis]
Length = 530
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|194386804|dbj|BAG61212.1| unnamed protein product [Homo sapiens]
Length = 502
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 229 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 288
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 289 LNGFELAGRPMKVG 302
>gi|148674239|gb|EDL06186.1| RNA binding motif protein 39, isoform CRA_d [Mus musculus]
Length = 507
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 234 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 293
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 294 LNGFELAGRPMKVG 307
>gi|410953912|ref|XP_003983612.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39 [Felis
catus]
Length = 523
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 250 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 309
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 310 LNGFELAGRPMKVG 323
>gi|326931688|ref|XP_003211958.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like
[Meleagris gallopavo]
Length = 571
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 300 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 359
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 360 LNGFELAGRPMKVG 373
>gi|194384132|dbj|BAG64839.1| unnamed protein product [Homo sapiens]
Length = 521
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 242 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 301
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 302 LNGFELAGRPMKVG 315
>gi|61557287|ref|NP_001013225.1| RNA-binding protein 39 [Rattus norvegicus]
gi|392346874|ref|XP_003749654.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Rattus
norvegicus]
gi|60552170|gb|AAH91394.1| RNA binding motif protein 39 [Rattus norvegicus]
gi|74196119|dbj|BAE32977.1| unnamed protein product [Mus musculus]
gi|149030834|gb|EDL85861.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Rattus
norvegicus]
Length = 524
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|384252120|gb|EIE25597.1| splicing factor, CC1-like protein [Coccomyxa subellipsoidea C-169]
Length = 497
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++Y+ ++HP++ E+D+K VFEAFG ++Y LQ+ + R +GYGF++Y+T + +A+
Sbjct: 234 KLYIGNLHPNIQEQDLKQVFEAFGAVEYITLQKDPT-GRSQGYGFVQYQTTPDATKAMQQ 292
Query: 94 MNLFDLGGQYLRVGRA-ITP 112
++ D+ G + V A +TP
Sbjct: 293 LDGLDIAGSQISVKIAPLTP 312
>gi|118403314|ref|NP_573505.2| RNA-binding protein 39 [Mus musculus]
gi|392346872|ref|XP_003749653.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Rattus
norvegicus]
gi|341941811|sp|Q8VH51.2|RBM39_MOUSE RecName: Full=RNA-binding protein 39; AltName: Full=Coactivator of
activating protein 1 and estrogen receptors;
Short=Coactivator of AP-1 and ERs; AltName:
Full=RNA-binding motif protein 39; AltName:
Full=RNA-binding region-containing protein 2; AltName:
Full=Transcription coactivator CAPER
gi|55991480|gb|AAH86645.1| RNA binding motif protein 39 [Mus musculus]
gi|74151058|dbj|BAE27657.1| unnamed protein product [Mus musculus]
gi|148674237|gb|EDL06184.1| RNA binding motif protein 39, isoform CRA_b [Mus musculus]
Length = 530
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|35493811|ref|NP_909122.1| RNA-binding protein 39 isoform a [Homo sapiens]
gi|281182530|ref|NP_001162566.1| RNA-binding protein 39 [Papio anubis]
gi|284004921|ref|NP_001164806.1| RNA-binding protein 39 [Oryctolagus cuniculus]
gi|149733225|ref|XP_001501869.1| PREDICTED: RNA-binding protein 39 isoform 1 [Equus caballus]
gi|296199703|ref|XP_002747279.1| PREDICTED: RNA-binding protein 39 isoform 2 [Callithrix jacchus]
gi|332858224|ref|XP_003316931.1| PREDICTED: uncharacterized protein LOC458443 isoform 1 [Pan
troglodytes]
gi|335304742|ref|XP_003360012.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|344279919|ref|XP_003411733.1| PREDICTED: RNA-binding protein 39 isoform 1 [Loxodonta africana]
gi|345789986|ref|XP_864959.2| PREDICTED: RNA-binding protein 39 isoform 3 [Canis lupus
familiaris]
gi|354477982|ref|XP_003501196.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Cricetulus
griseus]
gi|397523808|ref|XP_003831910.1| PREDICTED: RNA-binding protein 39 [Pan paniscus]
gi|426391507|ref|XP_004062114.1| PREDICTED: RNA-binding protein 39 isoform 1 [Gorilla gorilla
gorilla]
gi|28201880|sp|Q14498.2|RBM39_HUMAN RecName: Full=RNA-binding protein 39; AltName: Full=Hepatocellular
carcinoma protein 1; AltName: Full=RNA-binding motif
protein 39; AltName: Full=RNA-binding region-containing
protein 2; AltName: Full=Splicing factor HCC1
gi|405194|gb|AAA16347.1| splicing factor [Homo sapiens]
gi|119596565|gb|EAW76159.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|119596567|gb|EAW76161.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|146327034|gb|AAI41836.1| RNA binding motif protein 39 [Homo sapiens]
gi|164623752|gb|ABY64678.1| RNA binding motif protein 39, isoform 1 (predicted) [Papio anubis]
gi|165971473|gb|AAI58173.1| RNA binding motif protein 39 [Homo sapiens]
gi|166831598|gb|ABY90123.1| RNA binding motif protein 39 isoform a (predicted) [Callithrix
jacchus]
gi|169731519|gb|ACA64891.1| RNA binding motif protein 39 isoform a (predicted) [Callicebus
moloch]
gi|197215647|gb|ACH53039.1| RNA binding motif protein 39 isoform a (predicted) [Otolemur
garnettii]
gi|217038339|gb|ACJ76632.1| RNA binding motif protein 39 isoform a (predicted) [Oryctolagus
cuniculus]
gi|229368730|gb|ACQ63013.1| RNA binding motif protein 39 isoform a (predicted) [Dasypus
novemcinctus]
gi|351702535|gb|EHB05454.1| RNA-binding protein 39 [Heterocephalus glaber]
gi|380783277|gb|AFE63514.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|383408125|gb|AFH27276.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|384939254|gb|AFI33232.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|410218746|gb|JAA06592.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255434|gb|JAA15684.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292900|gb|JAA25050.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292904|gb|JAA25052.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350859|gb|JAA42033.1| RNA binding motif protein 39 [Pan troglodytes]
gi|440902514|gb|ELR53299.1| RNA-binding protein 39 [Bos grunniens mutus]
Length = 530
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|330688445|ref|NP_001193433.1| RNA-binding protein 39 [Bos taurus]
Length = 530
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 257 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 316
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 317 LNGFELAGRPMKVG 330
>gi|17063213|gb|AAL32373.1| transcription coactivator CAPER [Mus musculus]
Length = 530
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|296214508|ref|XP_002753659.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Callithrix
jacchus]
Length = 439
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 263 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRAMDQ 322
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 323 LNGFELAGRPMRVG 336
>gi|74179655|dbj|BAE22477.1| unnamed protein product [Mus musculus]
Length = 521
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 308 LNGFELAGRPMKVG 321
>gi|299755304|ref|XP_002912089.1| hypothetical protein CC1G_13622 [Coprinopsis cinerea okayama7#130]
gi|298411164|gb|EFI28595.1| hypothetical protein CC1G_13622 [Coprinopsis cinerea okayama7#130]
Length = 580
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV S+H +LTE DIK VFE FG +++ L + R KGY F++Y+ + + A+ M
Sbjct: 357 LYVGSLHFNLTESDIKQVFEPFGELEFVDLHKDPMTGRSKGYAFVQYKRAEDARMALEQM 416
Query: 95 NLFDLGGQYLRV 106
F+L G+ LRV
Sbjct: 417 EGFELAGRTLRV 428
>gi|432101442|gb|ELK29624.1| RNA-binding protein 39 [Myotis davidii]
Length = 491
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 229 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 288
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 289 LNGFELAGRPMKVG 302
>gi|88682991|gb|AAI05542.1| RBM39 protein [Bos taurus]
Length = 528
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 255 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 314
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 315 LNGFELAGRPMKVG 328
>gi|209155056|gb|ACI33760.1| RNA-binding protein 39 [Salmo salar]
Length = 535
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 254 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETARSKGYGFISFADAECAKKALEQ 313
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 314 LNGFELAGRPMKVG 327
>gi|24582417|ref|NP_723245.1| CG11266, isoform C [Drosophila melanogaster]
gi|24582419|ref|NP_723246.1| CG11266, isoform D [Drosophila melanogaster]
gi|24582421|ref|NP_723247.1| CG11266, isoform F [Drosophila melanogaster]
gi|24582423|ref|NP_723248.1| CG11266, isoform G [Drosophila melanogaster]
gi|45550943|ref|NP_723244.2| CG11266, isoform E [Drosophila melanogaster]
gi|22945836|gb|AAN10616.1| CG11266, isoform C [Drosophila melanogaster]
gi|22945837|gb|AAN10617.1| CG11266, isoform D [Drosophila melanogaster]
gi|22945838|gb|AAN10618.1| CG11266, isoform F [Drosophila melanogaster]
gi|22945839|gb|AAN10619.1| CG11266, isoform G [Drosophila melanogaster]
gi|45445036|gb|AAN10615.2| CG11266, isoform E [Drosophila melanogaster]
Length = 287
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 29 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 88
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 89 LNGFELAGRLMKVG 102
>gi|332249061|ref|XP_003273679.1| PREDICTED: RNA-binding protein 39 [Nomascus leucogenys]
Length = 432
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 159 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 218
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 219 LNGFELAGRPMKVG 232
>gi|184185564|gb|ACC68962.1| RNA binding motif protein 39 isoform a (predicted) [Rhinolophus
ferrumequinum]
Length = 498
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>gi|451845251|gb|EMD58564.1| hypothetical protein COCSADRAFT_103344 [Cochliobolus sativus
ND90Pr]
Length = 569
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS-SPHRHKGYGFIEYETKQASNEA 90
++R+YV +IH +TE+D++ +FE FG ++ LQ+ +P R KGYGF+++ + A
Sbjct: 274 FHRLYVGNIHFSVTEKDLQEIFEPFGELEQVILQRDEMNPGRSKGYGFVQFVDPSHAKNA 333
Query: 91 ISSMNLFDLGGQYLRVG 107
++ MN F+L G+ +RVG
Sbjct: 334 LAEMNGFELAGRQIRVG 350
Score = 35.8 bits (81), Expect = 6.3, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+TE+ + I+V I +++ FE GP+ ++ + R KG G++E++
Sbjct: 166 EVTEDDRDKRTIFVQQISQRAETRHLRAFFERVGPVVEAQIVKDRVTGRSKGVGYVEFKD 225
Query: 84 KQASNEAISSMNLFDLGGQYLR 105
+++ +A+ +L GQ L+
Sbjct: 226 EESVPQAL------ELTGQKLK 241
>gi|432858814|ref|XP_004068952.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Oryzias latipes]
Length = 502
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 226 RLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 285
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 286 LNGFELAGRPMKVG 299
>gi|432858816|ref|XP_004068953.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Oryzias latipes]
Length = 529
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 253 RLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 312
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 313 LNGFELAGRPMKVG 326
>gi|426241408|ref|XP_004014583.1| PREDICTED: RNA-binding protein 39 isoform 4 [Ovis aries]
Length = 508
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 229 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 288
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 289 LNGFELTGRPMKVG 302
>gi|426241406|ref|XP_004014582.1| PREDICTED: RNA-binding protein 39 isoform 3 [Ovis aries]
Length = 502
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 229 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 288
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 289 LNGFELTGRPMKVG 302
>gi|393247915|gb|EJD55422.1| splicing factor, CC1-like protein [Auricularia delicata TFB-10046
SS5]
Length = 581
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +LTE+DIK VFE FG + + L + R KGY F++Y+ + + A+
Sbjct: 355 QLYVGSLHFNLTEQDIKQVFEPFGELDFVDLHRDPGTGRSKGYAFVQYKRAEDAKMALEQ 414
Query: 94 MNLFDLGGQYLRV 106
M+ F+L G+ LRV
Sbjct: 415 MDGFELAGRTLRV 427
>gi|449551106|gb|EMD42070.1| hypothetical protein CERSUDRAFT_90674 [Ceriporiopsis subvermispora
B]
Length = 623
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +LTE DIK VFE FG +++ L + R KGY F++Y+ + + A+
Sbjct: 398 QLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRSEDARMALEQ 457
Query: 94 MNLFDLGGQYLRV 106
M F+L G+ LRV
Sbjct: 458 MEGFELAGRTLRV 470
>gi|426241404|ref|XP_004014581.1| PREDICTED: RNA-binding protein 39 isoform 2 [Ovis aries]
Length = 524
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELTGRPMKVG 324
>gi|291245052|ref|XP_002742405.1| PREDICTED: MGC81970 protein-like isoform 2 [Saccoglossus
kowalevskii]
Length = 444
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +FE FG I +L + + R KGYGFI + + + +A+
Sbjct: 145 RLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDAKKALEQ 204
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 205 LNGFELAGRPMKVG 218
>gi|313237383|emb|CBY12574.1| unnamed protein product [Oikopleura dioica]
Length = 116
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 46 EEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105
++D++ +F FG + L + +HK YGF+EY T +A+ +A SMNLF+L + +R
Sbjct: 2 DDDLRVIFSPFGDVVKAVLIRDFVTGKHKTYGFVEYTTVKAAADATESMNLFELKEKQIR 61
Query: 106 VGRAITPPNALHSSKGPAPSTSHMPTAAAV 135
VGRA+ PP + + GP + TA A+
Sbjct: 62 VGRAMIPPPQVINP-GPVLNFERTSTAMAI 90
>gi|426241410|ref|XP_004014584.1| PREDICTED: RNA-binding protein 39 isoform 5 [Ovis aries]
Length = 530
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 257 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 316
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 317 LNGFELTGRPMKVG 330
>gi|426241402|ref|XP_004014580.1| PREDICTED: RNA-binding protein 39 isoform 1 [Ovis aries]
Length = 530
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELTGRPMKVG 324
>gi|62122939|ref|NP_001014392.1| RNA binding motif protein 39b [Danio rerio]
gi|61402832|gb|AAH91794.1| RNA binding motif protein 39b [Danio rerio]
Length = 539
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 324
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 325 LNGFELAGRPMKVG 338
>gi|410931844|ref|XP_003979305.1| PREDICTED: RNA-binding protein 39-like, partial [Takifugu rubripes]
Length = 324
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +FE FG I+ +L + R KGYGFI + + + +A+
Sbjct: 143 RLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDTDTGRSKGYGFITFADAECAKKALEQ 202
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 203 LNGFELAGRPMKVG 216
>gi|158429066|pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 28 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 88 LNGFELAGRPMKVG 101
>gi|59858555|ref|NP_001012304.1| RNA-binding protein 39 [Danio rerio]
gi|27882534|gb|AAH44487.1| RNA binding motif protein 39a [Danio rerio]
gi|182892014|gb|AAI65689.1| Rbm39a protein [Danio rerio]
Length = 523
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L S R KGYGFI + + + +A+
Sbjct: 247 RLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 306
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 307 LNGFELAGRPMKVG 320
>gi|330920965|ref|XP_003299224.1| hypothetical protein PTT_10174 [Pyrenophora teres f. teres 0-1]
gi|311327182|gb|EFQ92678.1| hypothetical protein PTT_10174 [Pyrenophora teres f. teres 0-1]
Length = 570
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG-SSPHRHKGYGFIEYETKQASNEA 90
++R+YV +IH +TE D++ +FE FG ++ LQ+ ++P R KGYGF+++ + A
Sbjct: 276 FHRLYVGNIHFSVTEGDLRDIFEPFGALEQVILQRDEANPGRSKGYGFVQFVDPAHAKNA 335
Query: 91 ISSMNLFDLGGQYLRVG 107
++ MN F+L G+ +RVG
Sbjct: 336 LAEMNGFELAGRQIRVG 352
Score = 35.8 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 11 RPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSP 70
R + PQ + E+TE+ + I+V I +++ FE GP+ ++ +
Sbjct: 156 RTTRRPQTPAE-PEVTEDDRDKRTIFVQQISQRAETHHLRTFFERVGPVIEAQIVKDRVT 214
Query: 71 HRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105
R KG G++E++ +++ +A+ +L GQ L+
Sbjct: 215 LRSKGVGYVEFKDEESVAKAL------ELTGQKLK 243
>gi|50553814|ref|XP_504318.1| YALI0E23628p [Yarrowia lipolytica]
gi|49650187|emb|CAG79917.1| YALI0E23628p [Yarrowia lipolytica CLIB122]
Length = 621
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 13 SNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHR 72
+N+ + S ID + ++R+YV +I+ +TE +I +FEAFGPI++ LQ+ + +
Sbjct: 431 ANVNASTSAIDSVR-----FHRLYVGNIYFGVTEGEIIQIFEAFGPIEFADLQKEKT-GK 484
Query: 73 HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSK 120
KGY FI+Y + A+ MN F+L G+ LRVG + A + K
Sbjct: 485 SKGYCFIQYVNPDDAKTALEKMNGFELAGRKLRVGLGLGERGATKARK 532
>gi|440791603|gb|ELR12841.1| splicing factor, CC1like subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 594
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV ++H DL E+D+++VFE FG I+ L R KG+ F++Y++ + + +A+
Sbjct: 272 RLYVGNLHTDLAEDDLRTVFEPFGDIQQINLHIDPETGRSKGFAFVQYKSPEDAKKALQH 331
Query: 94 MNLFDLGGQYLRVGRAITPPNAL 116
N +L G+ L+VG ++ P L
Sbjct: 332 CNGMELAGRQLKVG-IVSDPGTL 353
>gi|363745135|ref|XP_423964.3| PREDICTED: poly(U)-binding-splicing factor PUF60-like, partial
[Gallus gallus]
Length = 158
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 94 MNLFDLGGQYLR 105
MN LGG+ ++
Sbjct: 147 MNSVMLGGRNIK 158
>gi|291245050|ref|XP_002742404.1| PREDICTED: MGC81970 protein-like isoform 1 [Saccoglossus
kowalevskii]
Length = 556
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +FE FG I +L + + R KGYGFI + + + +A+
Sbjct: 257 RLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDAKKALEQ 316
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 317 LNGFELAGRPMKVG 330
>gi|452820290|gb|EME27334.1| RNA-binding protein [Galdieria sulphuraria]
Length = 596
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ ++YV SIH ++E+D++++FE FG + +L + R +G+GF++Y+ + + +A
Sbjct: 305 FTKLYVGSIHFSISEDDLRTIFEPFGEVISLQLHKDPETGRSRGFGFVQYKNHEDAKKAF 364
Query: 92 SSMNLFDLGGQYLRVGRAITPPNALH 117
+N DL G+ L+VG A L
Sbjct: 365 EQLNGLDLAGRPLKVGLATAEAQKLQ 390
>gi|396488840|ref|XP_003842956.1| hypothetical protein LEMA_P087160.1 [Leptosphaeria maculans JN3]
gi|312219534|emb|CBX99477.1| hypothetical protein LEMA_P087160.1 [Leptosphaeria maculans JN3]
Length = 590
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS-SPHRHKGYGFIEYETKQASNEA 90
++R+YV +IH +TE+D++ +FE +G ++ LQ+ +P R KGYGF+++ + +A
Sbjct: 279 FHRLYVGNIHFSVTEKDLQEIFEPYGELEQVILQRDELNPGRSKGYGFVQFVDPTHAKDA 338
Query: 91 ISSMNLFDLGGQYLRVG 107
++ MN F+L G+ +RVG
Sbjct: 339 LAEMNGFELAGRQIRVG 355
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+TE+ + I+V I ++S FE GP+ ++ + R KG G++E++
Sbjct: 171 EVTEDDRDKRTIFVQQISQRAETRHLRSFFETVGPVVEAQIVKDRVTGRSKGVGYVEFKE 230
Query: 84 KQASNEAISSMNLFDLGGQYLR 105
+++ +A+ +L GQ L+
Sbjct: 231 EESVPKAL------ELTGQKLK 246
>gi|346465875|gb|AEO32782.1| hypothetical protein [Amblyomma maculatum]
Length = 558
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ +K +FE FG I +L + +R KGYGFI + + + +A+
Sbjct: 300 RLYVGSLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQ 359
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 360 LNGFELAGRPMKVG 373
>gi|405963791|gb|EKC29337.1| RNA-binding protein 39 [Crassostrea gigas]
Length = 557
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +FE FG I KL + +R +GYGFI + + + +A+
Sbjct: 261 RLYVGSLHFNITEEMLRGIFEPFGKIDDIKLIRDHETNRSQGYGFITFHDSEDAKKALEQ 320
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 321 LNGFELAGRPMKVG 334
>gi|391347243|ref|XP_003747874.1| PREDICTED: cleavage stimulation factor subunit 2-like [Metaseiulus
occidentalis]
Length = 422
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 12/125 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I D TEE +K++FE GP+ +L + KGYGF E++ ++ + A+ ++
Sbjct: 20 VFVGNIPYDATEEQLKTIFEEVGPVVNFRLVYDRETGKPKGYGFCEFKDQETAMSAMRNL 79
Query: 95 NLFDLGGQYLRVGRAITPPN-----ALHSSKGPAPS-------TSHMPTAAAVAAAAATA 142
N F++GG+ LRV A + N AL++ G P+ T H T A++ A A+
Sbjct: 80 NSFEIGGRALRVDHAASERNKEELKALYAQYGGPPAEPMYGEETDHNKTPEAISKAVASL 139
Query: 143 KIQAM 147
+ M
Sbjct: 140 PPEQM 144
>gi|409051610|gb|EKM61086.1| hypothetical protein PHACADRAFT_247456 [Phanerochaete carnosa
HHB-10118-sp]
Length = 584
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV S+H +LTE DI+ VFE FG +++ L + R KGY F++Y+ + + A+ M
Sbjct: 360 LYVGSLHFNLTESDIRQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRGEDAKMALEQM 419
Query: 95 NLFDLGGQYLRV 106
F+L G+ LRV
Sbjct: 420 EGFELAGRTLRV 431
>gi|431894348|gb|ELK04148.1| RNA-binding protein 39 [Pteropus alecto]
Length = 601
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 52/86 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 328 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 387
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSS 119
+N F+L G+ ++VG +A +S
Sbjct: 388 LNGFELAGRPMKVGHVTERTDASSAS 413
>gi|336389603|gb|EGO30746.1| hypothetical protein SERLADRAFT_455043 [Serpula lacrymans var.
lacrymans S7.9]
Length = 583
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +LTE DIK VFE FG +++ L + R KGY F++Y+ + + A+
Sbjct: 359 QLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRAEDARMALEQ 418
Query: 94 MNLFDLGGQYLRV 106
M F+L G+ LRV
Sbjct: 419 MEGFELAGRTLRV 431
>gi|336376609|gb|EGO04944.1| hypothetical protein SERLA73DRAFT_174031 [Serpula lacrymans var.
lacrymans S7.3]
Length = 583
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +LTE DIK VFE FG +++ L + R KGY F++Y+ + + A+
Sbjct: 359 QLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRAEDARMALEQ 418
Query: 94 MNLFDLGGQYLRV 106
M F+L G+ LRV
Sbjct: 419 MEGFELAGRTLRV 431
>gi|442761059|gb|JAA72688.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Ixodes ricinus]
Length = 235
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ +K +FE FG I +L + +R KGYGFI + + + +A+
Sbjct: 146 RLYVGSLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQ 205
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 206 LNGFELAGRPMKVG 219
>gi|48146631|emb|CAG33538.1| RNPC4 [Homo sapiens]
Length = 423
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYG I + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGLITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|398407631|ref|XP_003855281.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
gi|339475165|gb|EGP90257.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
Length = 598
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH + E D++ VFE FG +++ +LQ+ + R KGYGF+++ + A+
Sbjct: 310 FHRLYVGNIHFSIEESDLRDVFEPFGELEFVQLQKEDTG-RSKGYGFVQFAKSDEAKIAL 368
Query: 92 SSMNLFDLGGQYLRVG 107
MN F++ G+ +RVG
Sbjct: 369 EKMNGFEVAGRPIRVG 384
>gi|195434196|ref|XP_002065089.1| GK15272 [Drosophila willistoni]
gi|194161174|gb|EDW76075.1| GK15272 [Drosophila willistoni]
Length = 612
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 354 RLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 413
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 414 LNGFELAGRPMKVG 427
>gi|325191168|emb|CCA25956.1| Poly(U)bindingsplicing factor PUF60 putative [Albugo laibachii
Nc14]
Length = 454
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 7 VQVGRP---SNMPQAQSVIDEITEEAKLYNR----IYVASIHPDLTEEDIKSVFEAFGPI 59
++VGRP + P+ I +EA + N +Y+ + +L I+S+F FG I
Sbjct: 207 IKVGRPHRGNQNPKDSEAAVNIGKEA-IRNVPTKCVYIGGVRTELNSRHIESIFAPFGEI 265
Query: 60 KYCKLQQGSSPHR--HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+C + SS H+GYGFIE+ + + AI MN F+L GQ L+VG+A
Sbjct: 266 KHCVMTAVSSSESGVHRGYGFIEFGDEICAMNAIQHMNGFELAGQTLKVGKA 317
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV +++ +L E+DI++VF FG I L R KG+ F+E+ A+ A+
Sbjct: 137 RLYVGNLYYELKEDDIRNVFAPFGAIHSIDLSMEPGTGRSKGFCFLEFNDVLAAESAVQV 196
Query: 94 MNLFDLGGQYLRVGR 108
+N + + ++VGR
Sbjct: 197 LNGSTMANRAIKVGR 211
>gi|189237575|ref|XP_974855.2| PREDICTED: similar to splicing factor [Tribolium castaneum]
Length = 501
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++S+FE FG I +L R KGYGFI + + + +A+
Sbjct: 242 RLYVGSLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFRNCEDAKKALEQ 301
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 302 LNGFELAGRPMKVG 315
>gi|321472566|gb|EFX83536.1| hypothetical protein DAPPUDRAFT_194972 [Daphnia pulex]
Length = 366
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 49/73 (67%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++S+FE FG I++ +L + R KGYGFI + + + +A+
Sbjct: 111 RLYVGSLHFNITEDMLRSIFEPFGKIEHMQLMIDTETGRSKGYGFITFRNAEDAKKAMEQ 170
Query: 94 MNLFDLGGQYLRV 106
+N F+L G+ +++
Sbjct: 171 LNGFELAGRPMKI 183
>gi|270007747|gb|EFA04195.1| hypothetical protein TcasGA2_TC014444 [Tribolium castaneum]
Length = 522
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++S+FE FG I +L R KGYGFI + + + +A+
Sbjct: 263 RLYVGSLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFRNCEDAKKALEQ 322
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 323 LNGFELAGRPMKVG 336
>gi|426232776|ref|XP_004010396.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Ovis aries]
Length = 447
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 263 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSETGCSKGYGFITFSDSECARRALEQ 322
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +R+G P+
Sbjct: 323 LNGFELAGRPMRIGHVTERPDG 344
>gi|426232774|ref|XP_004010395.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Ovis aries]
Length = 463
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 279 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSETGCSKGYGFITFSDSECARRALEQ 338
Query: 94 MNLFDLGGQYLRVGRAITPPNA 115
+N F+L G+ +R+G P+
Sbjct: 339 LNGFELAGRPMRIGHVTERPDG 360
>gi|443921112|gb|ELU40879.1| splicing factor, CC1-like family protein [Rhizoctonia solani AG-1
IA]
Length = 399
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +LTE DI+ VFE FG + + L + + + KGY FI+Y+ + + A+
Sbjct: 171 QLYVGSLHFNLTESDIRQVFEPFGELDFVDLHRDPATGKSKGYCFIQYKRPEDARMALEQ 230
Query: 94 MNLFDLGGQYLRV 106
M F+L G+ LRV
Sbjct: 231 MEGFELAGRQLRV 243
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 21 VIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFE---AFGPIKYCKLQQGSSPHRHKGYG 77
VI+EI +E ++V+ + LT D+ FE G ++ ++ R KG G
Sbjct: 53 VIEEINDEDSEARSVFVSQLAARLTARDLGYFFEDKLGEGAVRDARIVTDRLSRRSKGIG 112
Query: 78 FIEYETKQASNEAIS 92
++E++ N+AI+
Sbjct: 113 YVEFKNIDLVNKAIA 127
>gi|114652071|ref|XP_522797.2| PREDICTED: probable RNA-binding protein 23 isoform 12 [Pan
troglodytes]
Length = 408
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 230 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALEQ 289
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 290 LNGFELAGRPMRVG 303
>gi|403412344|emb|CCL99044.1| predicted protein [Fibroporia radiculosa]
Length = 599
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +LTE DIK VFE FG +++ L + R KGY F++Y+ + + A+
Sbjct: 374 QLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRAEDARMALEQ 433
Query: 94 MNLFDLGGQYLRV 106
M F+L G+ LRV
Sbjct: 434 MEGFELAGRTLRV 446
>gi|47212475|emb|CAF90271.1| unnamed protein product [Tetraodon nigroviridis]
Length = 579
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 114 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSFDSVTMKHKGFAFVEYEMPEAAQLA 173
Query: 91 ISSMNLFDLGGQYLR 105
+ MN LGG+ ++
Sbjct: 174 LEQMNSVVLGGRNIK 188
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 34/38 (89%)
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
+EY+ QA+ +A++SMNLFDLGGQYLRVG+A+TPP AL
Sbjct: 311 LEYDKAQAAQDAVASMNLFDLGGQYLRVGKAVTPPVAL 348
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + DLTEE ++ +FE FGPI ++ + + +G+GF+ +E
Sbjct: 174 ELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKFGPITSHRVM--TKDGKSRGFGFVAFEK 231
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+ + EA+ +N +L G+ L VGRA
Sbjct: 232 PEDAEEAVQKLNGKELSDGKVLYVGRA 258
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ +ET++++N +I +
Sbjct: 92 VFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQ-DEKGQSKGYGFVHFETEESANTSIEKV 150
Query: 95 NLFDLGGQYLRVGRAIT 111
N L + + VGR I+
Sbjct: 151 NGMLLNEKKVYVGRFIS 167
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F + GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 64 NFDPIKGRPIRIMWSQRDPSLRKSGVG 90
>gi|410218750|gb|JAA06594.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307726|gb|JAA32463.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IYV ++ D+T+E+ +S+FE +G I L + + + +G+GF+ + +A++ A+
Sbjct: 238 FTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
Query: 92 SSMNLFDLGGQYLRVGRA 109
+N ++L GQ L VGRA
Sbjct: 298 EGLNEYELKGQKLYVGRA 315
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+ AI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 206
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 207 NGMLLNEKKVFVGHHI 222
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 120 NYTLIKGRPCRI 131
>gi|410261840|gb|JAA18886.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349769|gb|JAA41488.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349773|gb|JAA41490.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|114652069|ref|XP_001159523.1| PREDICTED: probable RNA-binding protein 23 isoform 11 [Pan
troglodytes]
Length = 426
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 308 LNGFELAGRPMRVG 321
>gi|159164266|pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+ +
Sbjct: 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67
Query: 95 NLFDLGGQYLRVG 107
N F+L G+ +RVG
Sbjct: 68 NGFELAGRPMRVG 80
>gi|410218752|gb|JAA06595.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307724|gb|JAA32462.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307728|gb|JAA32464.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|195116809|ref|XP_002002944.1| GI10246 [Drosophila mojavensis]
gi|193913519|gb|EDW12386.1| GI10246 [Drosophila mojavensis]
Length = 617
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 359 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 418
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 419 LNGFELAGRPMKVG 432
>gi|410261842|gb|JAA18887.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349771|gb|JAA41489.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|114652057|ref|XP_001159475.1| PREDICTED: probable RNA-binding protein 23 isoform 10 [Pan
troglodytes]
Length = 442
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|170071297|ref|XP_001869868.1| splicing factor [Culex quinquefasciatus]
gi|167867202|gb|EDS30585.1| splicing factor [Culex quinquefasciatus]
Length = 524
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L S R KGYGFI + + +A+
Sbjct: 268 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQ 327
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 328 LNGFELAGRPMKVG 341
>gi|327289313|ref|XP_003229369.1| PREDICTED: probable RNA-binding protein 23-like [Anolis
carolinensis]
Length = 445
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++T+E ++ +FE FG I L + + KGYGFI + + + A+
Sbjct: 267 RLYVGSLHCNITKEMLRGIFEPFGKIDSIVLMRDQDTGQSKGYGFITFSEAECARRALEQ 326
Query: 94 MNLFDLGGQYLRVGR 108
+N F+L G+ +RVG+
Sbjct: 327 LNGFELAGRPMRVGQ 341
>gi|221483471|gb|EEE21790.1| U2 snRNP auxiliary factor, putative [Toxoplasma gondii GT1]
gi|221507941|gb|EEE33528.1| U2 snRNP splicing factor, putative [Toxoplasma gondii VEG]
Length = 553
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 5 PHVQVGRPSNMPQAQSVIDEITEEAKLY----------------NRIYVASIHPDLTEED 48
PH V P P Q+ I + + K+ N+IY+ ++ P++ EE
Sbjct: 280 PHDYVPPPGGDPAHQAYIPLLDDAKKVKREEKREKPSRPETGPDNKIYIQNLPPEMGEEQ 339
Query: 49 IKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108
++ + E FG ++ L + +HKGYGF EYE + +++AI ++N F G L V R
Sbjct: 340 VRDLLEQFGTLRVLNLIRNVQTGQHKGYGFFEYEDPEVTDQAILALNGFVCGANMLSVQR 399
Query: 109 A 109
A
Sbjct: 400 A 400
>gi|237839189|ref|XP_002368892.1| U2 snRNP auxiliary factor or splicing factor, putative [Toxoplasma
gondii ME49]
gi|211966556|gb|EEB01752.1| U2 snRNP auxiliary factor or splicing factor, putative [Toxoplasma
gondii ME49]
Length = 553
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 5 PHVQVGRPSNMPQAQSVIDEITEEAKLY----------------NRIYVASIHPDLTEED 48
PH V P P Q+ I + + K+ N+IY+ ++ P++ EE
Sbjct: 280 PHDYVPPPGGDPAHQAYIPLLDDAKKVKREEKREKPSRPETGPNNKIYIQNLPPEMGEEQ 339
Query: 49 IKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108
++ + E FG ++ L + +HKGYGF EYE + +++AI ++N F G L V R
Sbjct: 340 VRDLLEQFGTLRVLNLIRNVQTGQHKGYGFFEYEDPEVTDQAILALNGFVCGANMLSVQR 399
Query: 109 A 109
A
Sbjct: 400 A 400
>gi|148231281|ref|NP_001085808.1| RNA binding motif protein 23 [Xenopus laevis]
gi|49118375|gb|AAH73374.1| MGC80803 protein [Xenopus laevis]
Length = 416
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TEE ++ +FE FG I+ +L + R KG+GFI + + + A+
Sbjct: 251 RLYVGSLHFNITEEMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGKPMKVG 324
>gi|242018247|ref|XP_002429590.1| A-kinase anchor protein, putative [Pediculus humanus corporis]
gi|212514557|gb|EEB16852.1| A-kinase anchor protein, putative [Pediculus humanus corporis]
Length = 408
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I DLTEE +K +F GP+ KL + KGYGF EY+ + +N A+ ++
Sbjct: 16 VFVGNIPFDLTEEKLKEIFSEVGPVLSFKLVYDRENGKPKGYGFCEYKDIETANSAMRNL 75
Query: 95 NLFDLGGQYLRVGRA 109
N F++GG+ L+V A
Sbjct: 76 NGFEIGGRVLKVDNA 90
>gi|395863338|ref|XP_003803853.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Otolemur
garnettii]
gi|395863342|ref|XP_003803855.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Otolemur
garnettii]
Length = 487
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE ++ +FE FG ++ +L + S R KGYGFI + + + +A+
Sbjct: 209 RLYVGSLHLNITEAMLRGIFEPFGRLESIQLMKDSETGRSKGYGFITFSDSECAKKALEQ 268
Query: 94 MNLFDLGGQYLRVG 107
+N +L G+ ++VG
Sbjct: 269 LNGLELAGRPMKVG 282
>gi|402875680|ref|XP_003901625.1| PREDICTED: probable RNA-binding protein 23 [Papio anubis]
Length = 497
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S KGYGFI + + + A+
Sbjct: 319 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFITFSDSECARRALEQ 378
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 379 LNGFELAGRPMRVG 392
>gi|395863336|ref|XP_003803852.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Otolemur
garnettii]
gi|395863340|ref|XP_003803854.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Otolemur
garnettii]
Length = 514
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE ++ +FE FG ++ +L + S R KGYGFI + + + +A+
Sbjct: 236 RLYVGSLHLNITEAMLRGIFEPFGRLESIQLMKDSETGRSKGYGFITFSDSECAKKALEQ 295
Query: 94 MNLFDLGGQYLRVG 107
+N +L G+ ++VG
Sbjct: 296 LNGLELAGRPMKVG 309
>gi|395334381|gb|EJF66757.1| splicing factor CC1-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 624
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H +L+E DIK VFE FG +++ L + R KGY F++Y+ + + A+
Sbjct: 399 QLYVGSLHFNLSESDIKQVFEPFGELEFVDLHRDPVTGRSKGYAFVQYKRAEDAKMALEQ 458
Query: 94 MNLFDLGGQYLRV 106
M+ F+L G+ LRV
Sbjct: 459 MDGFELAGRTLRV 471
>gi|195577213|ref|XP_002078467.1| GD23448 [Drosophila simulans]
gi|194190476|gb|EDX04052.1| GD23448 [Drosophila simulans]
Length = 608
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 350 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 409
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 410 LNGFELAGRLMKVG 423
>gi|328848768|gb|EGF97966.1| hypothetical protein MELLADRAFT_84111 [Melampsora larici-populina
98AG31]
Length = 695
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF-------IEYETK 84
Y R+YV S++ +LT++D++ VF+ FG I+Y L + + KGY F I ++
Sbjct: 432 YARLYVGSLNFNLTDDDLRQVFQPFGDIEYVDLHRDQITGKSKGYAFTLLTCVNIRFKNM 491
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ A+ MN F L G+ LRV PP AL ++ P
Sbjct: 492 HDAKNAMEKMNGFQLAGRALRVEIKAQPPAALLNATAPG 530
>gi|71003261|ref|XP_756311.1| hypothetical protein UM00164.1 [Ustilago maydis 521]
gi|46096316|gb|EAK81549.1| hypothetical protein UM00164.1 [Ustilago maydis 521]
Length = 640
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H LT+E +K+VFE FG I+Y L + + KG+ FI+++ + + +A+
Sbjct: 403 RLYVGSLHFSLTDEAVKTVFEPFGEIEYVDLHREPETGKSKGFCFIQFKKAEDAKKALEQ 462
Query: 94 MNLFDLGGQYLRVG 107
MN F L + +RVG
Sbjct: 463 MNGFVLADRAIRVG 476
>gi|339237675|ref|XP_003380392.1| RNA-binding protein 39 [Trichinella spiralis]
gi|316976770|gb|EFV59992.1| RNA-binding protein 39 [Trichinella spiralis]
Length = 680
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H ++TEE ++ +FE FG I+ +L + R +GYGFI + + + A+
Sbjct: 328 KLYVGSLHFNITEEMLRGIFEPFGKIESIQLLKDPETSRSRGYGFITFYNSEDAKRAMEQ 387
Query: 94 MNLFDLGGQYLRVGRAITPPNAL 116
+N F+L G+ ++VG N L
Sbjct: 388 LNGFELAGRPMKVGHVTEHQNTL 410
>gi|126277401|ref|XP_001369188.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Monodelphis
domestica]
Length = 415
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + R KG+GF+ + + + A+
Sbjct: 240 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALEQ 299
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 300 LNGFELAGRPMRVG 313
>gi|19920866|ref|NP_609095.1| CG11266, isoform B [Drosophila melanogaster]
gi|24582412|ref|NP_723243.1| CG11266, isoform A [Drosophila melanogaster]
gi|7297213|gb|AAF52478.1| CG11266, isoform A [Drosophila melanogaster]
gi|15292031|gb|AAK93284.1| LD35730p [Drosophila melanogaster]
gi|22945834|gb|AAN10614.1| CG11266, isoform B [Drosophila melanogaster]
gi|220946034|gb|ACL85560.1| CG11266-PA [synthetic construct]
gi|220955788|gb|ACL90437.1| CG11266-PA [synthetic construct]
Length = 594
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 396 LNGFELAGRLMKVG 409
>gi|194758325|ref|XP_001961412.1| GF14957 [Drosophila ananassae]
gi|190615109|gb|EDV30633.1| GF14957 [Drosophila ananassae]
Length = 594
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 396 LNGFELAGRLMKVG 409
>gi|170284570|gb|AAI61141.1| rbm23 protein [Xenopus (Silurana) tropicalis]
Length = 272
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L + R KG+GFI + + + A+
Sbjct: 100 RLYVGSLHFNITEDMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRALEQ 159
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 160 LNGFELAGRPMKVG 173
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IYV ++ D+T+E+ + +FE +G I L + + + +G+GF+ + +A++ A+
Sbjct: 238 FTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
Query: 92 SSMNLFDLGGQYLRVGRA 109
++N ++L GQ L VGRA
Sbjct: 298 EALNEYELKGQKLYVGRA 315
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+ AI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 206
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 207 NGMLLNEKKVFVGHHI 222
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 120 NYTLIKGRPCRI 131
>gi|256082942|ref|XP_002577710.1| splicing factor [Schistosoma mansoni]
gi|360043601|emb|CCD81147.1| putative splicing factor [Schistosoma mansoni]
Length = 327
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 48/73 (65%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++Y+ S+H ++TEE +K +FE FG I+ KL + + +R +GYGF+ Y + +A+
Sbjct: 68 KLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQ 127
Query: 94 MNLFDLGGQYLRV 106
+N F+L G+ ++V
Sbjct: 128 LNGFELAGRPMKV 140
>gi|195338839|ref|XP_002036031.1| GM16278 [Drosophila sechellia]
gi|194129911|gb|EDW51954.1| GM16278 [Drosophila sechellia]
Length = 596
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 338 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 397
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 398 LNGFELAGRLMKVG 411
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IYV ++ D+T+E+ + +FE +G I L + + + +G+GF+ + +A++ A+
Sbjct: 238 FTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
Query: 92 SSMNLFDLGGQYLRVGRA 109
++N ++L GQ L VGRA
Sbjct: 298 EALNEYELKGQKLYVGRA 315
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+ AI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 206
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 207 NGMLLNEKKVFVGHHI 222
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 120 NYTLIKGRPCRI 131
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IYV ++ D+T+E+ + +FE +G I L + + + +G+GF+ + +A++ A+
Sbjct: 238 FTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
Query: 92 SSMNLFDLGGQYLRVGRA 109
++N ++L GQ L VGRA
Sbjct: 298 EALNEYELKGQKLYVGRA 315
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+ AI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 206
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 207 NGMLLNEKKVFVGHHI 222
Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 38/87 (43%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ R+ + P + +G
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQG 146
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IYV ++ D+T+E+ + +FE +G I L + + + +G+GF+ + +A++ A+
Sbjct: 254 FTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 313
Query: 92 SSMNLFDLGGQYLRVGRA 109
++N ++L GQ L VGRA
Sbjct: 314 EALNEYELKGQKLYVGRA 331
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+ AI +
Sbjct: 164 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 222
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 223 NGMLLNEKKVFVGHHI 238
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 76 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 135
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 136 NYTLIKGRPCRI 147
>gi|194862772|ref|XP_001970115.1| GG10454 [Drosophila erecta]
gi|190661982|gb|EDV59174.1| GG10454 [Drosophila erecta]
Length = 593
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 335 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 394
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 395 LNGFELAGRLMKVG 408
>gi|126277398|ref|XP_001369153.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Monodelphis
domestica]
Length = 433
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + R KG+GF+ + + + A+
Sbjct: 258 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALEQ 317
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 318 LNGFELAGRPMRVG 331
>gi|256082940|ref|XP_002577709.1| splicing factor [Schistosoma mansoni]
gi|360043602|emb|CCD81148.1| putative splicing factor [Schistosoma mansoni]
Length = 463
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++Y+ S+H ++TEE +K +FE FG I+ KL + + +R +GYGF+ Y + +A+
Sbjct: 204 KLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQ 263
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAMDGGATN 153
+N F+L G+ ++V T A A A +D G T
Sbjct: 264 LNGFELAGRPMKVNHV----------------TERSEYACLSALDNDEADRSGVDLGTTG 307
Query: 154 AVGVLSKLSQ 163
+ +++KL++
Sbjct: 308 RLALMAKLAE 317
>gi|195397963|ref|XP_002057597.1| GJ18017 [Drosophila virilis]
gi|194141251|gb|EDW57670.1| GJ18017 [Drosophila virilis]
Length = 599
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 341 RLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 400
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 401 LNGFELAGRPMKVG 414
>gi|406880229|gb|EKD28634.1| RNA-binding protein [uncultured bacterium]
Length = 95
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV ++ D TEED++ +FE GP+ + R KG+ F+E E K ++AIS
Sbjct: 2 KLYVGNLSYDATEEDVRQIFEGVGPVSSVNMITDRDTGRPKGFAFVEMENKNDGDKAISE 61
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+N D+ G+ ++V ++ P SS GP
Sbjct: 62 LNDVDVKGRSIKV--SVARPKTAQSS-GP 87
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IYV ++ D+T+E+ + +FE +G I L + + + +G+GF+ + +A++ A+
Sbjct: 238 FTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
Query: 92 SSMNLFDLGGQYLRVGRA 109
++N ++L GQ L VGRA
Sbjct: 298 EALNEYELKGQKLYVGRA 315
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+ AI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 206
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 207 NGMLLNEKKVFVGHHI 222
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 120 NYTLIKGRPCRI 131
>gi|336259709|ref|XP_003344654.1| hypothetical protein SMAC_07222 [Sordaria macrospora k-hell]
Length = 631
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 7/76 (9%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ + R +GYGF++ E
Sbjct: 283 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDN-GRSRGYGFVQPERPS------ 335
Query: 92 SSMNLFDLGGQYLRVG 107
MN FDL G+ +RVG
Sbjct: 336 KKMNGFDLAGRPIRVG 351
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 34/61 (55%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L ++K FE GP+ ++ + +R KG G++E++++
Sbjct: 177 LTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKSE 236
Query: 85 Q 85
+
Sbjct: 237 E 237
>gi|395503034|ref|XP_003755878.1| PREDICTED: probable RNA-binding protein 23 [Sarcophilus harrisii]
Length = 451
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + R KG+GF+ + + + A+
Sbjct: 276 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALEQ 335
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 336 LNGFELAGRPMRVG 349
>gi|226469234|emb|CAX70096.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 327
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 48/73 (65%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++Y+ S+H ++TEE +K +FE FG I+ KL + + +R +GYGF+ Y + +A+
Sbjct: 68 KLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQ 127
Query: 94 MNLFDLGGQYLRV 106
+N F+L G+ ++V
Sbjct: 128 LNGFELAGRPMKV 140
>gi|195471585|ref|XP_002088083.1| GE14328 [Drosophila yakuba]
gi|194174184|gb|EDW87795.1| GE14328 [Drosophila yakuba]
Length = 590
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 332 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 391
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 392 LNGFELAGRLMKVG 405
>gi|126277396|ref|XP_001369125.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Monodelphis
domestica]
Length = 449
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + R KG+GF+ + + + A+
Sbjct: 274 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALEQ 333
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 334 LNGFELAGRPMRVG 347
>gi|323507689|emb|CBQ67560.1| related to RNA-binding region containing protein 2 [Sporisorium
reilianum SRZ2]
Length = 659
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H LT+E++K+VFE FG I+Y L + + KG+ FI+++ + + +A+
Sbjct: 410 RLYVGSLHFSLTDENVKAVFEPFGEIEYVDLHREPGTGKSKGFCFIQFKYPEDAKKALEQ 469
Query: 94 MNLFDLGGQYLRVG 107
MN F L + +RVG
Sbjct: 470 MNGFVLAERAIRVG 483
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IYV ++ D+T+E+ +++FE +G I L + + + +G+GF+ + +A++ A+
Sbjct: 166 FTNIYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 225
Query: 92 SSMNLFDLGGQYLRVGRA 109
+N ++L GQ L VGRA
Sbjct: 226 EGLNEYELKGQKLYVGRA 243
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+ AI +
Sbjct: 76 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN-SKGYGFVHYETAEAATNAIKHV 134
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 135 NGMLLNEKKVFVGHHI 150
>gi|351697087|gb|EHB00006.1| Putative RNA-binding protein 23 [Heterocephalus glaber]
Length = 436
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV +H ++TE+ ++ +FE FG I+ L + S KGYGFI + + + A+
Sbjct: 264 RLYVGCLHFNITEDMLRGIFEPFGKIENIVLMKDSETGHSKGYGFITFSESECARRAVEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>gi|226469236|emb|CAX70097.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 463
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++Y+ S+H ++TEE +K +FE FG I+ KL + + +R +GYGF+ Y + +A+
Sbjct: 204 KLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQ 263
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAMDGGATN 153
+N F+L G+ ++V T A A A +D G T
Sbjct: 264 LNGFELAGRPMKVNHV----------------TERSEYACLSALDNDEADRSGVDLGTTG 307
Query: 154 AVGVLSKLSQ 163
+ +++KL++
Sbjct: 308 RLALMAKLAE 317
>gi|221111756|ref|XP_002159647.1| PREDICTED: RNA-binding protein 39-like [Hydra magnipapillata]
Length = 528
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 48/73 (65%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H ++TE ++++FE FG ++ +LQ S +R KG+GF+ + A+ A+
Sbjct: 281 KLYVGSLHYNITEPMLRAIFEPFGTVESVQLQYDSETNRSKGFGFVNFREAGAAKRAMEQ 340
Query: 94 MNLFDLGGQYLRV 106
MN F+L G+ ++V
Sbjct: 341 MNGFELAGRPMKV 353
>gi|301624539|ref|XP_002941556.1| PREDICTED: RNA-binding protein 39 [Xenopus (Silurana) tropicalis]
Length = 420
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L + R KG+GFI + + + A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 308 LNGFELAGRPMKVG 321
>gi|357017085|gb|AET50571.1| hypothetical protein [Eimeria tenella]
Length = 527
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 3 HFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYC 62
H P ++ G + ++ + + KLY + ++ P++ E+ ++ + E FG ++
Sbjct: 273 HIPELERGTKPQQNEVRATAPPRSADCKLY----IQNLPPEMGEDQVRDLLEQFGKLRVL 328
Query: 63 KLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
L + +H+GYGF EYE + +++AI ++N F G L V R+ P+ L
Sbjct: 329 NLIKNRQTGKHRGYGFFEYEDPEVTDQAIEALNGFVCGASVLSVQRSNFMPDLL------ 382
Query: 123 APSTSHMPTAAAVAAAAATA 142
P+ H A+ ++ + A
Sbjct: 383 -PTKQHTTEVTALPSSTSYA 401
>gi|215820612|ref|NP_001135965.1| RNA binding motif protein 39 [Acyrthosiphon pisum]
Length = 501
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV S+H ++TEE ++ +FE FG + +L + R KGYGF+ Y + + +A+
Sbjct: 239 KLYVGSLHYNITEEMLRGIFEPFGHVDNIQLMMDTETGRSKGYGFLTYRNAEDAKKALEH 298
Query: 94 MNLFDLGGQYLRVG 107
+N F++ G+ ++VG
Sbjct: 299 LNGFEIAGRPMKVG 312
>gi|395859409|ref|XP_003802032.1| PREDICTED: probable RNA-binding protein 23 [Otolemur garnettii]
Length = 449
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+ +
Sbjct: 270 LFVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 329
Query: 95 NLFDLGGQYLRVGR 108
N F+L G+ ++VG+
Sbjct: 330 NGFELAGRPMKVGQ 343
>gi|209364023|ref|YP_001424629.2| glycine-rich RNA-binding protein [Coxiella burnetii Dugway
5J108-111]
gi|207081956|gb|ABS78255.2| glycine-rich RNA-binding protein [Coxiella burnetii Dugway
5J108-111]
Length = 112
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
N+IYV S+ D+T ++++S F +G I+ KL R KG+ FI Y T+ A+ EA+S
Sbjct: 9 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 68
Query: 93 SMNLFDLGGQYLRV 106
N DL G+ +RV
Sbjct: 69 KANGIDLQGRKIRV 82
>gi|440300922|gb|ELP93369.1| 29 kDa ribonucleoprotein, putative [Entamoeba invadens IP1]
Length = 248
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ--QGSSPHRHKGYGFIEYETKQASNEAI 91
++YV ++ TEE +K+ FE+FG +K C+L +G S KG+GF+EYET++ + +A+
Sbjct: 3 KLYVGNLSFKTTEEAMKTHFESFGKVKECRLMIYRGYS----KGFGFVEYETEEDAKKAV 58
Query: 92 SSMNLFDLGGQYLRVGRAITPPNALHSSKGPA-PSTSHMPTAAAVAAAAATAKIQAMDG 149
+S + G+ +RV + P S + P P P AA A A+ QA +G
Sbjct: 59 ASTGA-EFDGRKVRV--EVARPPVDRSQRQPRQPRAPRQPREAAPRAEGEKAEAQAQEG 114
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V ++ T++D+K FE F + + G + + KG+GF+E +TK+ AI +
Sbjct: 154 VFVGNLAFAATDDDLKKTFEKFNVVSAKVVTFGRTYVKSKGFGFVELKTKEDQQNAIKEL 213
Query: 95 NLFDLGGQYLRVGRAIT 111
N Q ++ R IT
Sbjct: 214 N------QSTQMERKIT 224
>gi|390342940|ref|XP_001198098.2| PREDICTED: RNA-binding protein 39-like [Strongylocentrotus
purpuratus]
Length = 666
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE ++ +FE FG I +L + +R KGYGFI + + + A+
Sbjct: 306 RLYVGSLHYNITEAMLRGIFEPFGKIDNIQLMMDTDANRSKGYGFITFHDAEDAKRALDQ 365
Query: 94 MNLFDLGGQYLRV 106
+N F+L G+ ++V
Sbjct: 366 LNGFELAGRPMKV 378
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +YV +I PD+TE+D + +FE FG + L Q+G S +G+GF+ +
Sbjct: 233 EEMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKS----RGFGFVNFT 288
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T +++++A+ +N D GQ L VGRA
Sbjct: 289 THESASKAVDDLNGKDFHGQDLYVGRA 315
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + + KGYGF+ YET +A+++AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHV 207
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 208 NGMLLNEKKVYVGHHI 223
>gi|153208628|ref|ZP_01946885.1| RNA-binding protein [Coxiella burnetii 'MSU Goat Q177']
gi|120575889|gb|EAX32513.1| RNA-binding protein [Coxiella burnetii 'MSU Goat Q177']
Length = 103
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
N+IYV S+ D+T ++++S F +G I+ KL R KG+ FI Y T+ A+ EA+S
Sbjct: 4 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 63
Query: 93 SMNLFDLGGQYLRV 106
N DL G+ +RV
Sbjct: 64 KANGIDLQGRKIRV 77
>gi|165919016|ref|ZP_02219102.1| RNA-binding protein [Coxiella burnetii Q321]
gi|165917271|gb|EDR35875.1| RNA-binding protein [Coxiella burnetii Q321]
Length = 107
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
N+IYV S+ D+T ++++S F +G I+ KL R KG+ FI Y T+ A+ EA+S
Sbjct: 4 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 63
Query: 93 SMNLFDLGGQYLRV 106
N DL G+ +RV
Sbjct: 64 KANGIDLQGRKIRV 77
>gi|161830439|ref|YP_001597044.1| RNA-binding protein [Coxiella burnetii RSA 331]
gi|161762306|gb|ABX77948.1| RNA-binding protein [Coxiella burnetii RSA 331]
Length = 107
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
N+IYV S+ D+T ++++S F +G I+ KL R KG+ FI Y T+ A+ EA+S
Sbjct: 4 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 63
Query: 93 SMNLFDLGGQYLRV 106
N DL G+ +RV
Sbjct: 64 KANGIDLQGRKIRV 77
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGR N ++ E+ +A + +Y+ + D+ +E +K VF +G K+ + S
Sbjct: 169 VGRFKNRKDREA---ELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDS 225
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S + KG+GF+ +++ +A+ +A+ MN D+ GQ L VGRA
Sbjct: 226 SG-KSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRA 265
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E ++ F +FG I
Sbjct: 262 VGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISR 321
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
K+ Q R KG+G I + + + + +A++ MN LG + L + A P
Sbjct: 322 VKVMQ--EEGRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQKP 370
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 12 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 72 NFDLIKGKSIRL 83
>gi|348674007|gb|EGZ13826.1| hypothetical protein PHYSODRAFT_249442 [Phytophthora sojae]
Length = 413
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIY ++H ++TE+D++ VF++FG + + + R KG+ FI++ + Q +N A+S
Sbjct: 125 RIYCGNLHTNITEDDLRIVFQSFGEVLSVTINR-DEMGRSKGFSFIQFSSPQEANFALSK 183
Query: 94 MNLFDLGGQYLRVG 107
N +L G YLR+G
Sbjct: 184 GNGLELAGNYLRLG 197
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR + QS +DEI + + IYV ++ ++ E++ + +FE +G I L
Sbjct: 271 VYVGRHIPRKERQSKLDEIRAQ---FTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNL 327
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ + KG+GF+ YET + + +A+ ++N D+ G+ L VGRA
Sbjct: 328 DAD-GKSKGFGFVNYETHEMAQKAVDALNEKDINGKKLFVGRA 369
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+Y+ +I D+ +E +++ FE +G I K+ + KG+GF+ + T + AI+ M
Sbjct: 399 LYIKNIDDDMDDEKLRAEFEPYGTITSSKIMRDDK-GVSKGFGFVCFSTPDEATRAIAEM 457
Query: 95 NLFDLGGQYLRVGRA 109
N +G + L V A
Sbjct: 458 NNKMIGSKPLYVSLA 472
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG + CK+ +QG+S KGYGF+ YET +A++ AI
Sbjct: 203 IFIKNLDEGIDNKALHDTFVAFGNVLSCKVAVDEQGNS----KGYGFVHYETAEAADAAI 258
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+++ L + + VGR I
Sbjct: 259 KAVDGMLLNDKKVYVGRHI 277
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 34/76 (44%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F GP+ ++ + + R GY ++ Y A+ +
Sbjct: 112 LYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGERALEQL 171
Query: 95 NLFDLGGQYLRVGRAI 110
N + G+ V R +
Sbjct: 172 NYSLIKGKPWHVSRIM 187
>gi|307195359|gb|EFN77277.1| RNA-binding protein 39 [Harpegnathos saltator]
Length = 370
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 110 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 169
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 170 LNGFELAGRPMKVG 183
>gi|383864354|ref|XP_003707644.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Megachile
rotundata]
Length = 507
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 247 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 306
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 307 LNGFELAGRPMKVG 320
>gi|350410161|ref|XP_003488967.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus impatiens]
Length = 508
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 308 LNGFELAGRPMKVG 321
>gi|340718900|ref|XP_003397900.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus
terrestris]
Length = 508
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 307
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 308 LNGFELAGRPMKVG 321
>gi|157108428|ref|XP_001650224.1| splicing factor [Aedes aegypti]
gi|108879330|gb|EAT43555.1| AAEL005046-PA [Aedes aegypti]
Length = 544
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L S R KGYGFI + + +A+
Sbjct: 288 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQ 347
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 348 LNGFELAGRPMKVG 361
>gi|312374824|gb|EFR22303.1| hypothetical protein AND_15459 [Anopheles darlingi]
Length = 560
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI + + +A+
Sbjct: 304 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDTDTGRSKGYGFITFHNADDAKKALEQ 363
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 364 LNGFELAGRPMKVG 377
>gi|328781105|ref|XP_624668.3| PREDICTED: RNA-binding protein 39-like [Apis mellifera]
Length = 506
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 246 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 305
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 306 LNGFELAGRPMKVG 319
>gi|358342556|dbj|GAA49996.1| RNA-binding protein 39 [Clonorchis sinensis]
Length = 730
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
H + R + +P + + T++ + ++Y+ S+H ++TEE +K +FE FG I KL
Sbjct: 155 HAEKNRMNAIPS----VPKPTQQNRGPMKLYIGSLHYNITEEMLKGIFEPFGKIDDIKLI 210
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ + R +GYGF+ Y + +A+ +N F+L G+ ++V
Sbjct: 211 KDPATGRSQGYGFVTYANSDDAKKALDQLNGFELAGRPMKVNHV---------------- 254
Query: 126 TSHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLSQ 163
T AA A A +D G T + +++KL++
Sbjct: 255 TERGEYAALSALDNDDADRAGVDLGTTGRLALMAKLAE 292
>gi|170058744|ref|XP_001865056.1| splicing factor [Culex quinquefasciatus]
gi|167877732|gb|EDS41115.1| splicing factor [Culex quinquefasciatus]
Length = 546
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L S R KGYGFI + + +A+
Sbjct: 290 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQ 349
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 350 LNGFELAGRPMKVG 363
>gi|380012525|ref|XP_003690330.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like [Apis
florea]
Length = 506
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 246 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPXTGRSKGYGFLTFRNADDAKKALEQ 305
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 306 LNGFELAGRPMKVG 319
>gi|402585183|gb|EJW79123.1| hypothetical protein WUBG_09969 [Wuchereria bancrofti]
Length = 114
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+Y+ SI ++ EE IK+ F FGPIK + + HKG+ F+EYE +A+ A
Sbjct: 34 LMARVYIGSISFEVREEMIKNAFGVFGPIKSINMSWDAVTGHHKGFAFLEYEIPEAALLA 93
Query: 91 ISSMNLFDLGGQYLRVGRAIT 111
SMN +GG+ L+V ++
Sbjct: 94 QESMNGVLMGGRNLKVNVLVS 114
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + DL+EE ++++FE FG I K+ + KG+GF+ +E+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKV-MSKDDGKSKGFGFVAFES 241
Query: 84 KQASNEAISSMNLFDL-GGQYLRVGRA 109
+A+ A+ ++N +L G+ L VGRA
Sbjct: 242 PEAAETAVDALNGKELVEGKPLYVGRA 268
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ +ET++A+N++I +
Sbjct: 101 VFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDEN-GTSKGYGFVHFETEEAANKSIEKV 159
Query: 95 NLFDLGGQYLRVGRAI 110
N L G+ + VGR I
Sbjct: 160 NGMLLNGKKVYVGRFI 175
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F + GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDLIRGRPIRIMWSQRDPSLRKSGVG 99
>gi|195050249|ref|XP_001992854.1| GH13506 [Drosophila grimshawi]
gi|193899913|gb|EDV98779.1| GH13506 [Drosophila grimshawi]
Length = 628
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L + R KGYGFI Y + +A+
Sbjct: 370 RLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDNETGRSKGYGFITYHNADDAKKALEQ 429
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 430 LNGFELAGRPMKVG 443
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D +E +K FE +G I K+ + KG+GF+ YET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAYET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGDGKTLYVARA 259
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGTS----KGYGFVHFETEEAANTSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 DKVNGMLLNGKKVYVGKFI 166
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+ E + F + GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDL 99
N FDL
Sbjct: 64 N-FDL 67
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + DLTEE ++++FE +G I K+ + KG+GF+ +E+
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDD-GKSKGFGFVAFES 241
Query: 84 KQASNEAISSMNLFD-LGGQYLRVGRA 109
+A+ A+ ++N + + G+ L VGRA
Sbjct: 242 PEAAETAVEALNGKEIIDGKPLYVGRA 268
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ +ET++A+N++I +
Sbjct: 101 VFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDEN-GTSKGYGFVHFETEEAANKSIEKV 159
Query: 95 NLFDLGGQYLRVGRAI 110
N L G+ + VGR I
Sbjct: 160 NGMLLNGKKVYVGRFI 175
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDLIKGRPIRIMWSQRDPSLRKSGVG 99
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKL--YNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q + E K+ NR +YV ++ + +E ++ F FG I
Sbjct: 265 VGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITS 324
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ +R KG+GF+ + + + + +A++ MN +G + L V A
Sbjct: 325 AKVMM--EDNRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 370
>gi|294884882|gb|ADF47449.1| TIA1-like protein [Dugesia japonica]
Length = 383
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 16 PQAQSVIDEITEEAKLYNR--IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRH 73
PQ + I+ I+ + N I+V I P++ + ++ F FG + CK+ + +
Sbjct: 94 PQTHAPINNISTQEDTSNHYHIFVGDIAPEIETQFLRERFSLFGRVTECKIIKDMHTQKP 153
Query: 74 KGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI-TPPNALHSSKGPAPSTSHMPTA 132
KGYGF+ Y TK+ + EA++ MN LG + +R AI PP + P
Sbjct: 154 KGYGFVAYATKEEAEEALNKMNGKFLGTRQIRTNWAIRRPPQPPGKDQKPLDYNE----- 208
Query: 133 AAVAAAAATAKIQAMDGGATNAV 155
V AA++ + GG TN +
Sbjct: 209 --VFAASSESNCTIYVGGITNGL 229
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV I L EE ++ F+ FG I ++ + KGY F+ +++ + + +AI M
Sbjct: 220 IYVGGITNGLCEELLRESFKEFGDILEVRI------FKEKGYAFVRFDSHEGATQAIIRM 273
Query: 95 NLFDLGGQYLRV 106
+ ++G Q +
Sbjct: 274 HGKEVGSQLCKC 285
>gi|242015973|ref|XP_002428613.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
gi|212513276|gb|EEB15875.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
Length = 593
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGFI + + + +A+
Sbjct: 266 RLYVGSLHFNITEDMLRGIFEPFGKIDSIQLIMDPETGRSKGYGFITFHSADDAKKALEQ 325
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 326 LNGFELAGRPMKVG 339
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ +YV +I PD+T+ED + +FE FG + L + + +G+GF+ + T +A+ +A+
Sbjct: 239 FTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQE-GKTRGFGFVNFTTHEAAFKAV 297
Query: 92 SSMNLFDLGGQYLRVGRA 109
+N D GQ L VGRA
Sbjct: 298 EELNGKDFRGQDLYVGRA 315
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + + KGYGF+ YET +A+ +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAAAQAIKHV 207
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 208 NGMLLNEKKVYVG 220
>gi|118788821|ref|XP_317010.3| AGAP008433-PA [Anopheles gambiae str. PEST]
gi|116122929|gb|EAA12873.4| AGAP008433-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ + +FE FG I +L + R KGYGFI + + +A+
Sbjct: 270 RLYVGSLHFNITEDMLNGIFEPFGKIDNIQLIMDADTGRSKGYGFITFHNADDAKKALEQ 329
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 330 LNGFELAGRPMKVG 343
>gi|212212428|ref|YP_002303364.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuG_Q212]
gi|212010838|gb|ACJ18219.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuG_Q212]
Length = 121
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
N+IYV S+ D+T ++++S F +G I+ KL R KG+ FI Y T+ A+ EA+S
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 93 SMNLFDLGGQYLRV 106
N DL G+ +RV
Sbjct: 78 KANGIDLQGRKIRV 91
>gi|212218608|ref|YP_002305395.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuK_Q154]
gi|215919123|ref|NP_820178.2| nucleic acid binding domain-containing protein [Coxiella burnetii
RSA 493]
gi|206584008|gb|AAO90692.2| glycine-rich RNA-binding protein [Coxiella burnetii RSA 493]
gi|212012870|gb|ACJ20250.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuK_Q154]
Length = 117
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
N+IYV S+ D+T ++++S F +G I+ KL R KG+ FI Y T+ A+ EA+S
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 93 SMNLFDLGGQYLRV 106
N DL G+ +RV
Sbjct: 78 KANGIDLQGRKIRV 91
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 7/89 (7%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ---QGSSPHRHKGYGFIE 80
EI E++K Y +YV + +LT+E + +F+ +G I C + G+S KG+GFI
Sbjct: 184 EIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTS----KGFGFIA 239
Query: 81 YETKQASNEAISSMNLFDLGGQYLRVGRA 109
+E +++ +A++ MN ++L G L VGRA
Sbjct: 240 FEEPESAEKAVTEMNNYELNGTNLYVGRA 268
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ G S KGYGF+ +E+ +A+N+AI
Sbjct: 102 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVAIDDDGVS----KGYGFVHFESIEAANKAI 157
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 158 EKVNGMLLNGKKVYVGKFI 176
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKL--YNRI-----YVASIHPDLTEEDIKSVFEAFGP 58
++ VGR + + + E+ KL YNRI Y+ ++ + ++ F FG
Sbjct: 262 NLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGA 321
Query: 59 IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ + R KG+GF+ + T + +++AI+ M+
Sbjct: 322 ITSAKVM--TEGGRSKGFGFVCFSTPEEASKAITEMD 356
Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F G I ++ + S + GY ++ + + + +M
Sbjct: 14 LYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDTM 73
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N L G+ +R+ + P+ S G
Sbjct: 74 NFDLLKGKPIRIMWSQRDPSLRKSGIG 100
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 23 DEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
D EE K Y +YV +I+ + T+E + +F FGPI L++ + + KG+GF+ Y
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDAD-GKLKGFGFVNY 266
Query: 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSK 120
E + + +A+ ++N DL G+ L VGRA +H K
Sbjct: 267 ENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLK 305
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HPD+ + + F FG I K+ + + KG+GF+ +E + A+ EAI ++
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 95 NLFDLGGQYLRV 106
N L GQ + V
Sbjct: 187 NGMLLNGQEIYV 198
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGR N ++ E+ +A + +Y+ + D+ +E +K VF +G K+ S
Sbjct: 268 VGRFKNRKDREA---ELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDS 324
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S + KG+GF+ +++ +A+ +A+ MN D+ GQ L VGRA
Sbjct: 325 S-GKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRA 364
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E + F +FG I
Sbjct: 361 VGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISR 420
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPP--NALH 117
K+ + R KG+G I + + + + +A++ MN LG + L + A P NA H
Sbjct: 421 VKIMR--EEGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQKPXERNAYH 476
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + A+ +M
Sbjct: 111 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALDTM 170
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 171 NFDTIKGKPIRL 182
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + IY+ + D+ +E +K VF +G K+
Sbjct: 167 VFVGRFKNRKDREA---ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 223
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 224 DSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F A GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 12 LYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDTM 71
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 72 NFDIIKGKSIRL 83
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++YV ++ + +E +++ F +FG I
Sbjct: 262 VGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIR 321
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
K+ Q + KG+GFI + + + + +A+ MN
Sbjct: 322 VKVMQ--QEGQSKGFGFICFSSLEDATKAMIEMN 353
>gi|301101828|ref|XP_002900002.1| Poly(U)-binding-splicing factor PUF60, putative [Phytophthora
infestans T30-4]
gi|262102577|gb|EEY60629.1| Poly(U)-binding-splicing factor PUF60, putative [Phytophthora
infestans T30-4]
Length = 444
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+Y+ +++ DL EEDI +VF FG I+ L R KG+ F+EYE A+ A
Sbjct: 116 LARRLYIGNLYYDLKEEDISNVFAPFGTIRSIDLSLEPGASRSKGFCFLEYEDVLAAESA 175
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ +N L + +RVGR
Sbjct: 176 VQVLNGTPLANRAIRVGR 193
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 7 VQVGRP----SNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYC 62
++VGRP +N + S+ E + IYVA++ +L + ++S+F FG I C
Sbjct: 189 IRVGRPHRGNTNSNDSLSIGQEAIKNVPT-KCIYVANVRVELNSQHLESIFSPFGAIHSC 247
Query: 63 KLQQGSSPHR--HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ SP H+GYGF+ + + + AI MN F+L GQ L+VG+A
Sbjct: 248 -VMTAVSPLESGHRGYGFMRFVEESCALSAIQHMNGFELAGQALKVGKA 295
>gi|301108451|ref|XP_002903307.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262097679|gb|EEY55731.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 556
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIY ++H ++TE+D++ VF++FG + + + R KG+ FI++ + Q +N A+S
Sbjct: 273 RIYCGNLHTNITEDDLRIVFQSFGEVLSVTINR-DEMGRSKGFSFIQFSSPQEANFALSK 331
Query: 94 MNLFDLGGQYLRVG 107
N +L G +LR+G
Sbjct: 332 GNGLELAGSFLRLG 345
>gi|325187692|emb|CCA22234.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 423
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIY ++H ++TE+ ++ VF +FG + + + R KGYGFI++ T Q +N A+S
Sbjct: 140 RIYCGNLHTNVTEDHLRVVFHSFGEVVSVNINR-DEMGRSKGYGFIQFGTPQEANLALSK 198
Query: 94 MNLFDLGGQYLRVG 107
N +L G +LR+G
Sbjct: 199 GNGLELHGNFLRLG 212
>gi|215820610|ref|NP_001135964.1| RNA binding motif protein 39 [Nasonia vitripennis]
Length = 516
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+ ++TEE +K +FE FG I+ +L R KGYGF+ + + +A+
Sbjct: 256 RLYVGSLLFNITEEMLKGIFEPFGKIENIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 315
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 316 LNGFELAGRPMKVG 329
>gi|374316448|ref|YP_005062876.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
gi|359352092|gb|AEV29866.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 92
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+IYV ++ + +EE+++ +F +G + + R KG+GF+E E A++ AIS
Sbjct: 4 KIYVGNMSYNTSEEELRDLFSQYGTVLSASIIIDRETRRPKGFGFVEMEEDSAADAAISQ 63
Query: 94 MNLFDLGGQYLRVGRAITPP 113
++ DLGG+ LRV AI P
Sbjct: 64 LDGKDLGGRNLRVNEAIAKP 83
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + IY+ + D+ +E +K VF +G K+
Sbjct: 224 VFVGRFKNRKDREA---ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 280
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 281 DSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 322
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 69 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 128
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 129 NFDIIKGKSIRL 140
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E +++ F +FG I
Sbjct: 319 VGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR 378
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ Q + KG+G I + + + + +A++ MN LG + L + A
Sbjct: 379 VKVMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 424
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I K+ S KGY F+ ++ + A++ AI M
Sbjct: 157 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 214
Query: 95 NLFDLGGQYLRVGR 108
N L G + VGR
Sbjct: 215 NGKLLKGCKVFVGR 228
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 23 DEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
D EE K Y +YV +I+ + T+E + +F FGPI L++ + + KG+GF+ Y
Sbjct: 97 DSQLEETKAHYTNLYVKNINSETTDEQFQDLFIQFGPIVSASLEKDAD-GKLKGFGFVNY 155
Query: 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSK 120
E + + +A+ ++N DL G+ L VGRA +H K
Sbjct: 156 ENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLK 194
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HPD+ + + F FG I K+ + + KG+GF+ +E + A+ EAI ++
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 95 NLFDLGGQYLRV 106
N L GQ + V
Sbjct: 76 NGMLLNGQEIYV 87
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + IY+ + D+ +E +K VF +G K+
Sbjct: 225 VFVGRFKNRKDREA---ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 281
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 282 DSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 323
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 130 NFDIIKGKSIRL 141
Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E +++ F +FG I
Sbjct: 320 VGRAQKKVERQAELKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR 379
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ Q + KG+G I + + + + +A++ MN LG + L + A
Sbjct: 380 VKVMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I K+ S KGY F+ ++ + A++ AI M
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 95 NLFDLGGQYLRVGR 108
N L G + VGR
Sbjct: 216 NGKLLKGCKVFVGR 229
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + IY+ + D+ +E +K VF +G K+
Sbjct: 225 VFVGRFKNRKDREA---ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 281
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 282 DSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 323
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 130 NFDIIKGKSIRL 141
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E +++ F +FG I
Sbjct: 320 VGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR 379
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ Q + KG+G I + + + + +A++ MN LG + L + A
Sbjct: 380 VKVMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I K+ S KGY F+ ++ + A++ AI M
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 95 NLFDLGGQYLRVGR 108
N L G + VGR
Sbjct: 216 NGKLLKGCKVFVGR 229
>gi|350401751|ref|XP_003486249.1| PREDICTED: cleavage stimulation factor subunit 2-like [Bombus
impatiens]
Length = 441
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE++K +F GP+ KL + KGYGF
Sbjct: 9 QSLMD------KSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 62
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 63 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + IY+ + D+ +E +K VF +G K+
Sbjct: 225 VFVGRFKNRKDREA---ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 281
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 282 DSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 323
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 4 FPHVQVGRPSNMPQAQSVIDEITEEAKLYN--RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
FPH + S Q S D+ A Y +YV +H D+TE+ + F GP+
Sbjct: 38 FPHRDCSKSSR-GQTHSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLS 96
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106
++ + R GY ++ + + +A+ +MN + G+ +R+
Sbjct: 97 IRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDMIKGKSIRL 141
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E +++ F +FG I
Sbjct: 320 VGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR 379
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ Q + KG+G I + + + + +A++ MN LG + L + A
Sbjct: 380 VKVMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I K+ S KGY F+ ++ + A++ AI M
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 95 NLFDLGGQYLRVGR 108
N L G + VGR
Sbjct: 216 NGKLLKGCKVFVGR 229
>gi|307202383|gb|EFN81811.1| Cleavage stimulation factor 64 kDa subunit [Harpegnathos saltator]
Length = 439
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE++K +F GP+ KL + KGYGF
Sbjct: 9 QSLMD------KSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 62
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 63 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|195395200|ref|XP_002056224.1| GJ10336 [Drosophila virilis]
gi|194142933|gb|EDW59336.1| GJ10336 [Drosophila virilis]
Length = 427
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|348676634|gb|EGZ16451.1| hypothetical protein PHYSODRAFT_314245 [Phytophthora sojae]
Length = 449
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+Y+ +++ DL EEDI+S F FG I L R KG+ F+EYE A+ A
Sbjct: 118 LARRLYIGNLYYDLKEEDIRSAFAPFGAIHSIDLSLEPGASRSKGFCFLEYEDVLAAESA 177
Query: 91 ISSMNLFDLGGQYLRVG---RAITPPN 114
+ +N L + +RVG R T PN
Sbjct: 178 VQVLNGTPLANRAMRVGRPHRGNTNPN 204
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHR---HKGYGFIEYETKQASNEAI 91
IY+A++ +L + ++S+F FG I+ + SP H+GYGF+E+ + + AI
Sbjct: 222 IYIANVRVELNSQHLESIFSPFGAIR-SSVMAAVSPLESGVHRGYGFMEFVEESCAASAI 280
Query: 92 SSMNLFDLGGQYLRVGRA 109
MN F+L GQ L+VG+A
Sbjct: 281 QHMNGFELAGQPLKVGKA 298
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + +Y+ + D+ +E +K VF +G K+
Sbjct: 167 VFVGRFKNRKDREA---ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 223
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 224 DSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 72 NFDIIKGKSIRL 83
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E +++ F +FG I
Sbjct: 262 VGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR 321
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ Q + KG+G I + + + + +A++ MN LG + L + A
Sbjct: 322 VKVMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I K+ S KGY F+ ++ + A++ AI M
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 95 NLFDLGGQYLRVGR 108
N L G + VGR
Sbjct: 158 NGKLLKGCKVFVGR 171
>gi|383860217|ref|XP_003705587.1| PREDICTED: cleavage stimulation factor subunit 2-like [Megachile
rotundata]
Length = 441
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE++K +F GP+ KL + KGYGF
Sbjct: 9 QSLMD------KSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 62
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 63 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|195145742|ref|XP_002013849.1| GL24357 [Drosophila persimilis]
gi|194102792|gb|EDW24835.1| GL24357 [Drosophila persimilis]
Length = 418
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|443687463|gb|ELT90434.1| hypothetical protein CAPTEDRAFT_110688, partial [Capitella teleta]
Length = 353
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
GR + A S + ++ ++ I+V + PD+ ++ F+ FG I CK+ +
Sbjct: 63 GREMKVNWATSPGTQTKQDTSKHHHIFVGDLSPDIETPQLREAFKPFGTISDCKIIRDPQ 122
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNA 115
+ KGYGF+ Y ++ + AI+SMN +G + +R AI P A
Sbjct: 123 TLKSKGYGFVSYVERKEAENAINSMNGQWIGSRAIRTNWAIRKPAA 168
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 21 VIDEITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFI 79
DE+ +++ N +Y I LTE+ ++S F G I+ ++ + KGY FI
Sbjct: 180 TFDEVFKKSSPTNCTVYCGGILSGLTEDLVRSAFGEHGKIEEIRV------FKDKGYAFI 233
Query: 80 EYETKQASNEAISSMNLFDLGGQYLRV 106
Y TK+A+ EAI M+ ++GG ++
Sbjct: 234 RYNTKEAATEAIVKMHQTEVGGHTVKC 260
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKL--QQGSSPHRHKGYGFIEYETKQASNEAISS 93
YV ++ P +TE+ + ++F + GP K CK+ + G+ P Y F+E+ ++ A+ +
Sbjct: 1 YVGNLDPTVTEDLLMALFGSIGPCKGCKIIHETGNEP-----YAFVEFSEHSSAALALGT 55
Query: 94 MNLFDLGGQYLRVGRAITP 112
MN G+ ++V A +P
Sbjct: 56 MNKRTCFGREMKVNWATSP 74
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + +Y+ + D+ +E +K VF +G K+
Sbjct: 167 VFVGRFKNRKDREA---ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 223
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 224 DSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 72 NFDIIKGKSIRL 83
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E +++ F +FG I
Sbjct: 262 VGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR 321
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ Q + KG+G I + + + + +A++ MN LG + L + A
Sbjct: 322 VKVMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I K+ S KGY F+ ++ + A++ AI M
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 95 NLFDLGGQYLRVGR 108
N L G + VGR
Sbjct: 158 NGKLLKGCKVFVGR 171
>gi|301114008|ref|XP_002998774.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262112075|gb|EEY70127.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 392
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 17/100 (17%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV ++ +LT+ D+++ F FGPI+ C ++ KGY F+ YE + + A+
Sbjct: 10 KLYVGNLFYELTQRDVEAEFGKFGPIEQCAVK--------KGYAFVHYEQLEDAELAVQE 61
Query: 94 MNLFDLGGQYLRVGRAIT---------PPNALHSSKGPAP 124
MN +LGG+ LRV A++ PP + ++ PAP
Sbjct: 62 MNDKELGGRRLRVAFAVSHGTQRRFDGPPPPMQNNASPAP 101
>gi|125774537|ref|XP_001358527.1| GA20525 [Drosophila pseudoobscura pseudoobscura]
gi|54638266|gb|EAL27668.1| GA20525 [Drosophila pseudoobscura pseudoobscura]
Length = 418
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 48/78 (61%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
Y IY+ ++H D+T+++ + +FE +G + + + + +G+GFI + T +++ +A+
Sbjct: 239 YTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAV 298
Query: 92 SSMNLFDLGGQYLRVGRA 109
+N ++ GQ L VGRA
Sbjct: 299 EELNSREIHGQELYVGRA 316
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+ +AI +
Sbjct: 149 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAAQQAIKHV 207
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 208 NGMLLNEKKVYVGHHI 223
>gi|28557621|gb|AAO45216.1| RE27227p [Drosophila melanogaster]
Length = 437
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D +E +K FE +G I K+ + KG+GF+ +ET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAFET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGEGKSLYVARA 259
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + I F AFG I CK+ + KGYGF+ +ET++A+N +I +
Sbjct: 92 VFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDEKAN-SKGYGFVHFETEEAANTSIDKV 150
Query: 95 NLFDLGGQYLRVGRAI 110
N L G+ + VG+ I
Sbjct: 151 NGMLLNGKKVYVGKFI 166
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+ E ++ F + GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N L + +R+ + P+ S G
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSGVG 90
>gi|156553552|ref|XP_001601896.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Nasonia vitripennis]
Length = 434
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE++K +F GP+ KL + KGYGF
Sbjct: 9 QSLMD------KSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 62
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 63 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|17137710|ref|NP_477453.1| cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|5713194|gb|AAD47839.1|AF170082_1 cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|23171661|gb|AAF55577.2| cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|205360993|gb|ACI03573.1| FI01908p [Drosophila melanogaster]
Length = 419
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|332026262|gb|EGI66401.1| Cleavage stimulation factor 64 kDa subunit [Acromyrmex echinatior]
Length = 480
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%)
Query: 18 AQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYG 77
+ S I + T K ++V +I + TEE++K +F GP+ KL + KGYG
Sbjct: 2 SNSTISDQTLMDKSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYG 61
Query: 78 FIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
F EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 62 FCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|66516308|ref|XP_623321.1| PREDICTED: cleavage stimulation factor subunit 2 [Apis mellifera]
Length = 441
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE++K +F GP+ KL + KGYGF
Sbjct: 9 QSLMD------KSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 62
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 63 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS +DE + +YV +IHPD +E+ + F GPI L++ + + +G+GF
Sbjct: 212 QSKLDEAKAN---FTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNE-GKLRGFGF 267
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ YE + +A+ +N D GQ L VGRA
Sbjct: 268 VNYENHNDAAKAVEELNETDFKGQTLHVGRA 298
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HPD+ + + F FG I CK+ + + +G+GF+ +E +A+ EAI ++
Sbjct: 132 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGN-SRGFGFVHFEDDEAAKEAIDAI 190
Query: 95 NLFDLGGQYLRVGRAIT 111
N L GQ + V + ++
Sbjct: 191 NGMLLNGQEVYVAQHVS 207
>gi|345496803|ref|XP_003427819.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Nasonia vitripennis]
Length = 425
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE++K +F GP+ KL + KGYGF
Sbjct: 9 QSLMD------KSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 62
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 63 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS DE+ + IY+ +I PD+TEE+ + +FE FG I L + + +G+GF
Sbjct: 221 QSKFDEMKAN---FTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGF 276
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ Y T +++ A+ M+ ++ Q L VGRA
Sbjct: 277 VNYSTHESAQAAVDEMHDKEVKTQKLYVGRA 307
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 196
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 197 KHVNGMLLNDKKVFVGHHIS 216
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 53 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 112
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 113 NYTLIKGKPCRI 124
>gi|195108753|ref|XP_001998957.1| GI23336 [Drosophila mojavensis]
gi|193915551|gb|EDW14418.1| GI23336 [Drosophila mojavensis]
Length = 428
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|195037535|ref|XP_001990216.1| GH18352 [Drosophila grimshawi]
gi|193894412|gb|EDV93278.1| GH18352 [Drosophila grimshawi]
Length = 430
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|380028061|ref|XP_003697730.1| PREDICTED: cleavage stimulation factor subunit 2-like [Apis florea]
Length = 441
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE++K +F GP+ KL + KGYGF
Sbjct: 9 QSLMD------KSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 62
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 63 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|307172466|gb|EFN63915.1| Cleavage stimulation factor 64 kDa subunit [Camponotus floridanus]
Length = 438
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE++K +F GP+ KL + KGYGF
Sbjct: 9 QSLMD------KSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 62
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 63 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|393903982|gb|EFO15894.2| cleavage stimulation factor [Loa loa]
Length = 337
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I ++ EE +K VF GP+ + +L + KGYGF EY Q + AI ++
Sbjct: 28 VFVGNISYEVGEEQLKQVFAQVGPVVHLRLVHDRDTGKPKGYGFCEYNDAQTAESAIRNL 87
Query: 95 NLFDLGGQYLRVGRA 109
N F+L G+ LRV A
Sbjct: 88 NGFELNGRPLRVDSA 102
>gi|312094880|ref|XP_003148175.1| cleavage stimulation factor [Loa loa]
Length = 334
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I ++ EE +K VF GP+ + +L + KGYGF EY Q + AI ++
Sbjct: 28 VFVGNISYEVGEEQLKQVFAQVGPVVHLRLVHDRDTGKPKGYGFCEYNDAQTAESAIRNL 87
Query: 95 NLFDLGGQYLRVGRA 109
N F+L G+ LRV A
Sbjct: 88 NGFELNGRPLRVDSA 102
>gi|170054071|ref|XP_001862961.1| cleavage stimulation factor 64 kDa subunit [Culex quinquefasciatus]
gi|167874431|gb|EDS37814.1| cleavage stimulation factor 64 kDa subunit [Culex quinquefasciatus]
Length = 400
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE +K +F GP+ KL + KGYGF
Sbjct: 7 QSIMD------KSMRSVFVGNIPYEATEEKLKDIFSEVGPVISLKLVFDRESGKPKGYGF 60
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 61 CEYKDQETALSAMRNLNGYEIGGRALRVDNACT 93
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ +Y+ +I P++T+E+ +FE FG I L + S + +G+GF+ +E+ +A+ +A+
Sbjct: 259 FTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDES-GKPRGFGFVNFESHEAAQKAV 317
Query: 92 SSMNLFDLGGQYLRVGRA 109
MN ++ G+ L VGRA
Sbjct: 318 DEMNDYEFHGKKLYVGRA 335
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 3 HFPHVQVGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEA 55
H + VGR + ++ + + E+ KL +++ ++ ++ + +K+ F A
Sbjct: 326 HGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKTEFSA 385
Query: 56 FGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
FG I K+ + + KG+GF+ Y + + + +AI+ MN L G+ L V A
Sbjct: 386 FGTITSAKVMTDEN-GKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALA 438
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ P + + + F AFG I CK+ + G+S KGYGF+ + + ++N AI
Sbjct: 169 IFIKNLDPAIDNKALHDTFSAFGTILSCKVALDEYGNS----KGYGFVHFASIDSANAAI 224
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG ++
Sbjct: 225 EHVNGMLLNDKKVYVGHHVS 244
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 39/87 (44%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F GP+ ++ + + + GY ++ Y +A+ +
Sbjct: 81 LYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEEL 140
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ R+ + P+ + G
Sbjct: 141 NYSLIKGRACRIMWSQRDPSLRKTGTG 167
>gi|195343246|ref|XP_002038209.1| GM17877 [Drosophila sechellia]
gi|194133059|gb|EDW54627.1| GM17877 [Drosophila sechellia]
Length = 419
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|195497709|ref|XP_002096214.1| GE25546 [Drosophila yakuba]
gi|194182315|gb|EDW95926.1| GE25546 [Drosophila yakuba]
Length = 414
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|194743216|ref|XP_001954096.1| GF16912 [Drosophila ananassae]
gi|190627133|gb|EDV42657.1| GF16912 [Drosophila ananassae]
Length = 415
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + +Y+ + D+ +E +K VF +G K+
Sbjct: 225 VFVGRFKNRKDREA---ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 281
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 282 DSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 323
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 130 NFDIIKGKSIRL 141
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E +++ F +FG I
Sbjct: 320 VGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR 379
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ Q + KG+G I + + + + +A++ MN LG + L + A
Sbjct: 380 VKVMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I K+ S KGY F+ ++ + A++ AI M
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 95 NLFDLGGQYLRVGR 108
N L G + VGR
Sbjct: 216 NGKLLKGCKVFVGR 229
>gi|195569859|ref|XP_002102926.1| GD19237 [Drosophila simulans]
gi|194198853|gb|EDX12429.1| GD19237 [Drosophila simulans]
Length = 419
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D +E +K FE +G I K+ + KG+GF+ +ET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAFET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGEGKSLYVARA 259
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNS----KGYGFVHFETEEAANTSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 DKVNGMLLNGKKVYVGKFI 166
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D +E +K FE +G I K+ + KG+GF+ +ET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAFET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGEGKSLYVARA 259
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS----KGYGFVHFETEEAANTSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 DKVNGMLLNGKKVYVGKFI 166
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D +E +K FE +G I K+ + KG+GF+ +ET
Sbjct: 172 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAFET 230
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 231 TEAAEAAVQALNGKDMGEGKSLYVARA 257
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS----KGYGFVHFETEEAANTSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 DKVNGMLLNGKKVYVGKFI 166
>gi|194900156|ref|XP_001979623.1| GG22991 [Drosophila erecta]
gi|190651326|gb|EDV48581.1| GG22991 [Drosophila erecta]
Length = 416
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 6 QEQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 59
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 94
>gi|357612395|gb|EHJ67964.1| putative RNA-binding region-containing protein [Danaus plexippus]
Length = 536
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I + +L + KGYGF+ + + +A+
Sbjct: 281 RLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPDTGKSKGYGFLTFHHATDAKKAMEQ 340
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAM 147
+N F+L G+ ++VG + S++ A A AT ++Q M
Sbjct: 341 LNGFELAGRPMKVGNVTERADGGSSTRFDADELDR-----AGVDLGATGRLQLM 389
>gi|341896316|gb|EGT52251.1| CBN-RNP-4 protein [Caenorhabditis brenneri]
Length = 143
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +IH + TE+D+ F FG IK L KGY +EYET++ +NEAI
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEFGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIEKS 116
Query: 95 NLFDLGGQYLRV 106
N DL GQ ++V
Sbjct: 117 NDTDLLGQNVKV 128
>gi|195452858|ref|XP_002073531.1| GK14167 [Drosophila willistoni]
gi|194169616|gb|EDW84517.1| GK14167 [Drosophila willistoni]
Length = 401
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q QS++D K ++V +I + TEE +K +F GP+ KL + KG+
Sbjct: 7 QDQSIMD------KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGF 60
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 61 GFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D +E +K FE +G I K+ + KG+GF+ +ET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAFET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGEGKSLYVARA 259
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS----KGYGFVHFETEEAANTSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 DKVNGMLLNGKKVYVGKFI 166
>gi|322788027|gb|EFZ13868.1| hypothetical protein SINV_14012 [Solenopsis invicta]
Length = 291
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE++K +F GP+ KL + KGYGF
Sbjct: 9 QSLMD------KSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 62
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 63 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|84996941|ref|XP_953192.1| RNA binding protein [Theileria annulata strain Ankara]
gi|65304188|emb|CAI76567.1| RNA binding protein, putative [Theileria annulata]
Length = 479
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%)
Query: 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQA 86
EE++ +IY+ ++ P T EDI+ +F +FG I L ++ KG+ F+EY K++
Sbjct: 148 EESQKSAKIYIGALDPSCTIEDIRVIFSSFGDILNIDLPTDPETNKVKGFCFVEYRKKES 207
Query: 87 SNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQA 146
++ A+ SM F + G+ +++GR + S P + + A A AA +Q
Sbjct: 208 ADLALVSMQGFHIKGKPIKLGRPNVSSSGSSSGICPIGYNNPLSNPLAAGAVAAATLLQN 267
Query: 147 MDGGATNAVGVLSKLS 162
G + VL+K+S
Sbjct: 268 RSGVRVDTSNVLTKIS 283
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKL-QQGSSPHRHKGYGFIEYETKQASNEAIS 92
R+ + +I DL DI+ +FE FG I C L + P G+I++ + S
Sbjct: 302 RVVLENIPFDLAASDIRRIFEPFGAITECVLYSREMLPGAFYALGYIDFVNANVAQTVCS 361
Query: 93 SMNLFDLGGQYLRVGRA 109
+MN F++ G ++V A
Sbjct: 362 TMNGFEIAGSKIQVTMA 378
>gi|297806401|ref|XP_002871084.1| hypothetical protein ARALYDRAFT_487209 [Arabidopsis lyrata subsp.
lyrata]
gi|297316921|gb|EFH47343.1| hypothetical protein ARALYDRAFT_487209 [Arabidopsis lyrata subsp.
lyrata]
Length = 307
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASN 88
AK +RI+V + P++TE D++ F FG I C++ R +G+GFI + ++A +
Sbjct: 3 AKEGSRIFVGGLSPEVTERDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 89 EAISSMNLFDLGGQYLRVGRA 109
E+I M+ D G + + V RA
Sbjct: 63 ESIREMHGRDFGDRVISVNRA 83
>gi|167383625|ref|XP_001736605.1| cold-inducible RNA-binding protein [Entamoeba dispar SAW760]
gi|165900936|gb|EDR27150.1| cold-inducible RNA-binding protein, putative [Entamoeba dispar
SAW760]
Length = 138
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+Y+ S+ +T+E +++ FE FG + CK+ R KG+GF+ +E + + +AI
Sbjct: 3 RLYIGSLAYSVTDESLRAAFEKFGTVTDCKVVTDRESQRSKGFGFVTFEKDEDAKKAIEE 62
Query: 94 MNLFDLGGQYLRV 106
MN +L G+ ++V
Sbjct: 63 MNEQELEGRRIKV 75
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + + +E +K FE +G I K+ + KG+GF+ YET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEEFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAYET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGEGKSLYVARA 259
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNS----KGYGFVHFETEEAANTSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 DKVNGMLLNGKKVYVGKFI 166
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+ E + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDL 99
N FDL
Sbjct: 64 N-FDL 67
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +A + +Y+ + D+ +E +K +F FG I K+ S R KG+GF+ +++
Sbjct: 181 ELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMT-DSRGRSKGFGFVSFDS 239
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+A+ A+ MN DL GQ L VGRA
Sbjct: 240 HEAAQRAVEIMNGKDLSGQPLFVGRA 265
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAK--LYNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + + E+ K Y R +Y+ ++ + +E ++ F +FG I
Sbjct: 262 VGRAQKKAERQAELKLMFEQMKQERYRRFRGVKLYIKNLDDSIDDERLRREFSSFGSISR 321
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
K+ + R KG+G I + + + + +A+ MN LG + L + A P
Sbjct: 322 VKVMK--EEGRSKGFGLICFSSPEEATKAMVEMNGRILGSKSLNIALAQRP 370
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++H + + + F AFG I K+ + R GY F+ ++++ A++ AI +M
Sbjct: 100 VFIKNLHKSIDNKTLYEHFSAFGKILSSKVMSDDAGSR--GYAFVHFQSQTAADRAIEAM 157
Query: 95 NLFDLGGQYLRVG 107
N L G L VG
Sbjct: 158 NGALLKGCRLFVG 170
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 38/72 (52%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H ++TE+ + F A GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 12 LYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALDTM 71
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 72 NFDMIKGKSIRL 83
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 9 VGRPSNMPQAQSVIDEITE---EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+GR + A S I + T + ++ I+V + P + D++ F FG I C++
Sbjct: 77 LGRELRVNWASSAIQQQTPHRPDTSKHHHIFVGDLSPQIETSDLREAFSPFGEISDCRVV 136
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPN 114
+ ++ + KGYGF+ + KQ + AI +M+ LG + +R A PN
Sbjct: 137 KDATTQKSKGYGFVSFTNKQDAENAIHTMDGSWLGSRAIRTNWASRKPN 185
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL--QQGSSPHRHKGYGFIEYETKQASNEAIS 92
+YV ++ +TE+ + ++F G IK CK+ + GS P Y F+E+ ++ AI+
Sbjct: 15 LYVGNLDSGVTEDLVCALFSQMGQIKGCKIIHEPGSDP-----YCFVEFVNHSDASSAIT 69
Query: 93 SMNLFDLGGQYLRVGRA 109
+MN G+ LRV A
Sbjct: 70 AMNARMCLGRELRVNWA 86
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 23 DEITEEAKLYN-RIYVASIHPDLTEED-IKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIE 80
DE+ ++ N +Y ++ + ED ++ F+ FG I +L + KGY FI+
Sbjct: 203 DEVFAQSSPSNCTVYCGGLNQMASSEDFLRQAFDEFGEIVDIRL------FKDKGYAFIK 256
Query: 81 YETKQASNEAISSMNLFDLGGQYLRV 106
+ +K+++ AI + + D+GGQ ++
Sbjct: 257 FNSKESACRAIVARHNSDIGGQAVKC 282
>gi|407033602|gb|EKE36900.1| RNA recognition motif (RRM, RBD, or RNP domain) containing protein
[Entamoeba nuttalli P19]
Length = 136
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+Y+ S+ +T+E +K+ FE FG + CK+ R KG+GF+ +E + + +AI
Sbjct: 3 RLYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEE 62
Query: 94 MNLFDLGGQYLRV 106
MN +L G+ ++V
Sbjct: 63 MNEQELEGRRIKV 75
>gi|50552626|ref|XP_503723.1| YALI0E09174p [Yarrowia lipolytica]
gi|49649592|emb|CAG79313.1| YALI0E09174p [Yarrowia lipolytica CLIB122]
Length = 253
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV SI D TEE + +F++ GP+ KL R KGYGF EY + AI ++
Sbjct: 6 VYVGSIPYDQTEEQMLDIFKSVGPVISLKLMFDKETGRSKGYGFAEYPDADTARSAIRNL 65
Query: 95 NLFDLGGQYLRV 106
N F +G + LRV
Sbjct: 66 NGFQVGSRQLRV 77
>gi|168061001|ref|XP_001782480.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666033|gb|EDQ52699.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 363
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV ++H ++TE+ ++ VFE FGP++ +L + KGYGF++Y + + A +
Sbjct: 73 RLYVGNLHFNMTEDQLRQVFEPFGPVELVQLPSDIETGQSKGYGFVQYARLEDARAAQQN 132
Query: 94 MNLFDLGGQYLRV 106
+N +L G+ ++V
Sbjct: 133 LNGLELAGRPIKV 145
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +A + IYV ++H D+ E+ ++ +F FG + K+ + +S H +G+GF+ +E
Sbjct: 182 ELGAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGH-SRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ GQ L VGRA
Sbjct: 241 HEEAQKAVDHMNGKEVSGQQLYVGRA 266
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG 99
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+ +AIS+M
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETNEAAQQAISTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ +++E +++VF +G I K+ + KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDSISDEKLRTVFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 NLFDLGGQYLRVGRA 109
N +G + L V A
Sbjct: 354 NGCIVGTKPLYVALA 368
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ ++ D+ +E ++ +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN DL G+ + VGRA
Sbjct: 241 HEDARKAVDEMNGKDLNGKQIYVGRA 266
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + F AFG I CK+ + GS KGYGF+ +ET++ + AI
Sbjct: 101 IFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEEAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMFLNDRKVFVGR 172
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F + GPI ++ + + R GY + ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEM 363
Query: 95 N 95
N
Sbjct: 364 N 364
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +A + +Y+ + D+ +E +K VF +G I K+ SS + KG+GF+ ++T
Sbjct: 181 ELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSG-KSKGFGFVSFDT 239
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+A+ A+ MN D+ GQ + VGRA
Sbjct: 240 HEAAQRAVEYMNGKDICGQMVFVGRA 265
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPI 59
V VGR + Q+ + ++ E+ K ++Y+ ++ + EE ++ F +FG +
Sbjct: 260 VFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIKNLDETIDEEQLRRAFSSFGSM 319
Query: 60 KYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
K+ + R KG+G I + + + +A++ MN LG + + + A P
Sbjct: 320 SRVKVME--EEGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAINIALAQRP 370
>gi|341889641|gb|EGT45576.1| hypothetical protein CAEBREN_06918 [Caenorhabditis brenneri]
Length = 348
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I D+TE+ I+++F GP+ K+ + KGYGFIE+ Q ++ AI +
Sbjct: 19 VFVGNISYDVTEDTIRAMFSKAGPVMSIKMVHDRETGKPKGYGFIEFPDIQTADTAIRVL 78
Query: 95 NLFDLGGQYLRVGRA 109
N +LGG+ LRV A
Sbjct: 79 NGHELGGRILRVDSA 93
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + +Y+ + D+ +E +K VF +G K+
Sbjct: 138 VFVGRFKNRKDREA---ELRNKAGEFTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMT 194
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ ++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 195 DSSG-KSKGFGFVSFDNHEAAKKAVKEMNGKDINGQLIFVGRA 236
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 12 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVA----AAAATAKIQAMDG 149
N + G+ +R+ + S G S A +AA I+ M+G
Sbjct: 72 NFDVVNGKSIRLMWSQRDAYLRRSGIGNVMSDDQGSKGYAFVHFQNQSAADRAIEEMNG 130
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E ++ F +FG I
Sbjct: 233 VGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISR 292
Query: 62 CK-LQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K +Q+G KG+G I + + + + +A++ MN LG + L + A
Sbjct: 293 VKVMQEGGQS---KGFGLICFSSLEEATKAMTEMNGHILGSKPLSIALA 338
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ ++ D+ +E ++ +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN DL G+ + VGRA
Sbjct: 241 HEDARKAVDEMNGKDLNGKQIYVGRA 266
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + F AFG I CK+ + GS KGYGF+ +ET++ + AI
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEEAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMFLNDRKVFVGR 172
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + + R GY + ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 15 MPQAQSVIDEITEEAKLYNR---IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
M Q + I+++ ++ + + +YV ++ + +E ++ F FG I K+
Sbjct: 283 MKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGG-- 340
Query: 72 RHKGYGFIEYETKQASNEAISSMN 95
R KG+GF+ + + + + +A++ MN
Sbjct: 341 RSKGFGFVCFSSPEEATKAVTEMN 364
>gi|335423511|ref|ZP_08552532.1| RNP-1 like RNA-binding protein [Salinisphaera shabanensis E1L3A]
gi|334891336|gb|EGM29584.1| RNP-1 like RNA-binding protein [Salinisphaera shabanensis E1L3A]
Length = 90
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ + +++++ FEAFG + K+ R +G+GF+E + +AI M
Sbjct: 3 IYVGNLSWNTNDDELRGAFEAFGEVSSAKVIMDRETGRSRGFGFVEMPDDNDAKQAIEGM 62
Query: 95 NLFDLGGQYLRVGRA 109
N DLGG+ LRV A
Sbjct: 63 NNKDLGGRTLRVNEA 77
>gi|340718898|ref|XP_003397899.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus
terrestris]
Length = 520
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 260 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 319
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 320 LNGFELAGRPMKVG 333
>gi|324514401|gb|ADY45855.1| Cleavage stimulation factor subunit 2 [Ascaris suum]
Length = 324
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I ++ EE +K VF GP+ + +L + KGYGF EY Q + AI ++
Sbjct: 25 VFVGNISYEVGEEQLKQVFSQVGPVVHLRLVHDRETGKPKGYGFCEYNDPQTAESAIRNL 84
Query: 95 NLFDLGGQYLRVGRA 109
N ++L G+ LRV A
Sbjct: 85 NGYELNGRQLRVDSA 99
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D +E +K FE +G I K+ + KG+GF+ +ET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMS-KEDGKSKGFGFVAFET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGEGKSLYVARA 259
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS----KGYGFVHFETEEAANTSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 DKVNGMLLNGKKVYVGKFI 166
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
EE K + +YV +I D TEE+ + +FE FG I L + + + +G+GF+ + +
Sbjct: 229 EEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHD 288
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
+ A+ ++N D GQ L VGRA
Sbjct: 289 NAAAAVEALNDKDFKGQKLYVGRA 312
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+ AI
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAAQNAI 200
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L + + VG I
Sbjct: 201 KHVNGMLLNDKKVFVGHHI 219
>gi|391336770|ref|XP_003742751.1| PREDICTED: RNA-binding protein 39-like [Metaseiulus occidentalis]
Length = 520
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H D++E+ +K +FE FG + +L + + + KGYGF+ + A+ +A+
Sbjct: 270 RLYVGSLHFDISEQMLKEIFEPFGRLDRVELIKEDT-GKSKGYGFVTFHEADAAKKAMEQ 328
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 329 LNGFELAGRPMKVG 342
>gi|350410158|ref|XP_003488966.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus impatiens]
Length = 532
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 272 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 331
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 332 LNGFELAGRPMKVG 345
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
EE K + +YV +I D TEE+ + +FE FG I L + + + +G+GF+ + +
Sbjct: 229 EEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHD 288
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
+ A+ ++N D GQ L VGRA
Sbjct: 289 NAAAAVEALNDKDFKGQKLYVGRA 312
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+ AI
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAAQNAI 200
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L + + VG I
Sbjct: 201 KHVNGMLLNDKKVFVGHHI 219
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
EE K + +YV +I D TEE+ + +FE FG I L + + + +G+GF+ + +
Sbjct: 229 EEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHD 288
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
+ A+ ++N D GQ L VGRA
Sbjct: 289 NAAAAVEALNDKDFKGQKLYVGRA 312
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+ AI
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAAQNAI 200
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L + + VG I
Sbjct: 201 KHVNGMLLNDKKVFVGHHI 219
>gi|428185150|gb|EKX54003.1| hypothetical protein GUITHDRAFT_132430 [Guillardia theta CCMP2712]
Length = 162
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 22 IDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
+D+I ++ +++V+ I L+ ED++ FE FGP++ + + R +G+ FI +
Sbjct: 53 MDKINDK-----KLFVSGIPFALSSEDLRETFEKFGPVEDSYVVKDRETGRSRGFAFITF 107
Query: 82 ETKQASNEAISSMNLFDLGGQYLRV 106
+K+A+++A S++N DLGG+ ++V
Sbjct: 108 SSKEAASQACSALNESDLGGRTVKV 132
>gi|168048203|ref|XP_001776557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672148|gb|EDQ58690.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 372
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV ++H ++TE+ ++ VFE FGP++ +L + KGYGF++Y + + A +
Sbjct: 73 RLYVGNLHFNMTEDQLRQVFEPFGPVELVQLPSDIETGQSKGYGFVQYARLEDARAAQQN 132
Query: 94 MNLFDLGGQYLRV 106
+N +L G+ ++V
Sbjct: 133 LNGLELAGRPIKV 145
>gi|67483728|ref|XP_657084.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449705266|gb|EMD45349.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 136
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+Y+ S+ +T+E +K+ FE FG + CK+ R KG+GF+ +E + + +AI
Sbjct: 3 RLYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEE 62
Query: 94 MNLFDLGGQYLRV 106
MN +L G+ ++V
Sbjct: 63 MNEQELEGRRIKV 75
>gi|383864352|ref|XP_003707643.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Megachile
rotundata]
Length = 530
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 270 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 329
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 330 LNGFELAGRPMKVG 343
>gi|225711846|gb|ACO11769.1| Cleavage stimulation factor 64 kDa subunit [Lepeophtheirus
salmonis]
Length = 330
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I + TEE +K +F GP+ KL + KGYGF EY+ + A+ ++
Sbjct: 18 VFVGNIPYEATEEKLKDIFSEVGPVTSFKLVYDRENGKPKGYGFCEYKDADMALSAMRNL 77
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKI 144
N +++ G+ LRV A T N L +KG A P V A I
Sbjct: 78 NGYEIEGRTLRVDNACTEKNRLEMAKGEAEEIVESPYGDPVHPDRAPETI 127
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 23 DEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
D EE K Y +YV +I+ + T+E + +F FGPI L++ + + KG+GF+ Y
Sbjct: 97 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNY 155
Query: 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSK 120
E + + +A+ ++N +L G+ L VGRA +H K
Sbjct: 156 EKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLK 194
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HPD+ + + F FG I K+ + + KG+GF+ +E + A+ EAI ++
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 95 NLFDLGGQYLRV 106
N L GQ + V
Sbjct: 76 NGMLLNGQEIYV 87
>gi|195996811|ref|XP_002108274.1| hypothetical protein TRIADDRAFT_37071 [Trichoplax adhaerens]
gi|190589050|gb|EDV29072.1| hypothetical protein TRIADDRAFT_37071 [Trichoplax adhaerens]
Length = 351
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+Y+ S+H ++ E+ ++++FE FG ++ + + S + KGYGFI+Y+ ++ A+
Sbjct: 93 RLYIGSLHYNINEDMLRAIFEPFGLVENVNIIRDSDTNVSKGYGFIQYKEPDSARRALEQ 152
Query: 94 MNLFDLGGQYLRVG 107
+N ++ G+ ++VG
Sbjct: 153 LNGLEVAGRPIKVG 166
>gi|432884715|ref|XP_004074554.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oryzias latipes]
Length = 386
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T +DIK+ F FG I C++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTDDIKAAFAPFGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A ++ PAP T++
Sbjct: 157 GGQWLGGRQIRTNWA---------TRKPAPKTTN 181
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ ++ H Y F+E+ + + I++M
Sbjct: 9 LYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDP--YCFVEFYEHRHATATIAAM 66
Query: 95 NLFDLGGQYLRVGRAITP 112
N + G+ ++V A TP
Sbjct: 67 NGRKILGKEVKVNWATTP 84
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 23 DEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
D EE K Y +YV +I+ + T+E + +F FGPI L++ + + KG+GF+ Y
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNY 266
Query: 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSK 120
E + + +A+ ++N +L G+ L VGRA +H K
Sbjct: 267 EKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLK 305
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HPD+ + + F FG I K+ + + KG+GF+ +E + A+ EAI ++
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 95 NLFDLGGQYLRV 106
N L GQ + V
Sbjct: 187 NGMLLNGQEIYV 198
>gi|17554514|ref|NP_497891.1| Protein RNP-4 [Caenorhabditis elegans]
gi|3878950|emb|CAA83626.1| Protein RNP-4 [Caenorhabditis elegans]
Length = 142
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +IH + TE+D+ F +G IK L KGY +EYET++ +NEAI
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 95 NLFDLGGQYLRV 106
N DL GQ ++V
Sbjct: 117 NDTDLLGQNVKV 128
>gi|157137809|ref|XP_001664044.1| RNA-binding protein [Aedes aegypti]
gi|108869641|gb|EAT33866.1| AAEL013869-PA [Aedes aegypti]
Length = 399
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS++D K ++V +I + TEE +K +F GP+ KL + KGYGF
Sbjct: 6 QSIMD------KSMRSVFVGNIPYEATEEKLKDIFCEVGPVISLKLVFDRESGKPKGYGF 59
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 60 CEYKDQETALSAMRNLNGYEIGGRALRVDNACT 92
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 23 DEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
D EE K Y +YV +I+ + T+E + +F FGPI L++ + + KG+GF+ Y
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNY 266
Query: 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSK 120
E + + +A+ ++N +L G+ L VGRA +H K
Sbjct: 267 EKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLK 305
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HPD+ + + F FG I K+ + + KG+GF+ +E + A+ EAI ++
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 95 NLFDLGGQYLRV 106
N L GQ + V
Sbjct: 187 NGMLLNGQEIYV 198
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 23 DEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
D EE K Y +YV +I+ + T+E + +F FGPI L++ + + KG+GF+ Y
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNY 266
Query: 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSK 120
E + + +A+ ++N +L G+ L VGRA +H K
Sbjct: 267 EKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLK 305
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HPD+ + + F FG I K+ + + KG+GF+ +E + A+ EAI ++
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 95 NLFDLGGQYLRV 106
N L GQ + V
Sbjct: 187 NGMLLNGQEIYV 198
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 23 DEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
D EE K Y +YV +I+ + T+E + +F FGPI L++ + + KG+GF+ Y
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNY 266
Query: 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSK 120
E + + +A+ ++N +L G+ L VGRA +H K
Sbjct: 267 EKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLK 305
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HPD+ + + F FG I K+ + + KG+GF+ +E + A+ EAI ++
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 95 NLFDLGGQYLRV 106
N L GQ + V
Sbjct: 187 NGMLLNGQEIYV 198
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + IY+ + D+ +E +K VF +G K+
Sbjct: 293 VFVGRFKNRKDREA---ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 349
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 350 -DSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 391
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 5 PHVQVGRPSNMPQAQSVIDEITEEAKLYN--RIYVASIHPDLTEEDIKSVFEAFGPIKYC 62
PH + S QA S D+ A Y +YV +H D+TE+ + F A GP+
Sbjct: 107 PHRDCSKSSR-GQAHSGKDKEMSVAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSI 165
Query: 63 KLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106
++ + R GY ++ + + +A+ +MN + G+ +R+
Sbjct: 166 RICRDQVTRRSLGYAYVNFLQLTDAQKALDTMNFDIIKGKSIRL 209
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++YV ++ + +E +++ F +FG I
Sbjct: 388 VGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIR 447
Query: 62 CKL--QQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
K+ Q+G S KG+GFI + + + + +A+ MN
Sbjct: 448 VKVMQQEGQS----KGFGFICFSSLEDATKAMIEMN 479
>gi|348542282|ref|XP_003458614.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oreochromis
niloticus]
Length = 386
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T +DIK+ F FG I C++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTDDIKAAFAPFGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPT 131
LGG+ +R A ++ PAP T+ T
Sbjct: 157 GGQWLGGRQIRTNWA---------TRKPAPKTTSETT 184
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ ++ H Y F+E+ + + I++M
Sbjct: 9 LYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDP--YCFVEFYEHRHATATIAAM 66
Query: 95 NLFDLGGQYLRVGRAITP 112
N + G+ ++V A TP
Sbjct: 67 NGRKILGKEVKVNWATTP 84
>gi|332019312|gb|EGI59819.1| RNA-binding protein 39 [Acromyrmex echinatior]
Length = 528
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 268 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 327
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 328 LNGFELAGRPMKVG 341
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS DE+ + IYV +I+P++T+++ +++FE +G + L + + +G+GF
Sbjct: 231 QSKFDEMKAN---FTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGF 287
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ + + + +++A+ +N + GQ L VGRA
Sbjct: 288 VNFTSHEDASKAVQELNEKEFHGQNLYVGRA 318
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + + KGYGF+ YET +A+++AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHV 209
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 210 NGMLLNEKKVYVGHHI 225
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F G + ++ + + R GY ++ Y T +A+ +
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 123 NYTLIKGRPCRI 134
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 23 DEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
D EE K Y +YV +I+ + T+E + +F FGPI L++ + + KG+GF+ Y
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNY 266
Query: 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSK 120
E + + +A+ ++N +L G+ L VGRA +H K
Sbjct: 267 EKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLK 305
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HPD+ + + F FG I K+ + + KG+GF+ +E + A+ EAI ++
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 95 NLFDLGGQYLRV 106
N L GQ + V
Sbjct: 187 NGMLLNGQEIYV 198
>gi|307180960|gb|EFN68748.1| RNA-binding protein 39 [Camponotus floridanus]
Length = 529
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I +L R KGYGF+ + + +A+
Sbjct: 269 RLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADDAKKALEQ 328
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 329 LNGFELAGRPMKVG 342
>gi|193598819|ref|XP_001951232.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Acyrthosiphon pisum]
gi|328706164|ref|XP_003243012.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Acyrthosiphon pisum]
Length = 386
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
Q+++D K ++V +I + TEE +K +F GP+ KL + KGYGF
Sbjct: 4 QNILD------KSMRSVFVGNIPYEATEEKLKDIFSEVGPVISFKLVYDRETGKPKGYGF 57
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 58 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACT 90
>gi|326432018|gb|EGD77588.1| hypothetical protein PTSG_08685 [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 21 VIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIE 80
+D + + N + + + P +TE D++ +F+ FG IK K+ H+ GYGF+E
Sbjct: 72 TLDSSADTPEPRNNLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVE 131
Query: 81 YETKQASNEAISSMNLFDLGGQYL 104
+ET + + AI +MN G QY+
Sbjct: 132 FETAEEAARAIQAMN----GRQYM 151
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D +E +K FE +G I K+ + KG+GF+ YET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAYET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G + L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGESKSLYVARA 259
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNS----KGYGFVHFETEEAANMSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 DRVNGMLLNGKKVYVGKFI 166
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+ E + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDL 99
N FDL
Sbjct: 64 N-FDL 67
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D +E +K FE +G I K+ + KG+GF+ YET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAYET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G + L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGESKSLYVARA 259
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNS----KGYGFVHFETEEAANTSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 DRVNGMLLNGKKVYVGKFI 166
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+ E + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDL 99
N FDL
Sbjct: 64 N-FDL 67
>gi|325972712|ref|YP_004248903.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
gi|324027950|gb|ADY14709.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
Length = 92
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+IYV ++ + +EE+++ +F +G + + R KG+GF+E + A++ AIS
Sbjct: 4 KIYVGNLSYNTSEEELRDLFAQYGTVVSANIIIDRETRRPKGFGFVEMQEDAAADAAISQ 63
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSS 119
++ ++GG+ LRV AI P H S
Sbjct: 64 LDGKEIGGRNLRVNEAIAKPRPTHGS 89
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +Y+ + + +E +K FE +G I K+ + KG+GF+ YET
Sbjct: 174 ELGEKAKLFTNVYIKNFTDEFDDEKLKENFEPYGKITSYKVM-SKDDGKSKGFGFVAYET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGEGKTLYVARA 259
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + I F AFG I CK+ H KGYGF+ +ET++A+N +I +
Sbjct: 92 VFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGH-SKGYGFVHFETEEAANTSIDKV 150
Query: 95 NLFDLGGQYLRVGRAI 110
N L G+ + VG+ I
Sbjct: 151 NGMLLNGKKVYVGKFI 166
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+ E + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDL 99
N FDL
Sbjct: 64 N-FDL 67
>gi|193671655|ref|XP_001946102.1| PREDICTED: cleavage stimulation factor subunit 2-like
[Acyrthosiphon pisum]
Length = 388
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I + TEE +K +F GP+ KL + KGYGF EY+ ++ + A+ ++
Sbjct: 14 VFVGNIPYEATEEKLKDIFNEVGPVISFKLVYDRETGKPKGYGFCEYKDQETALSAMRNL 73
Query: 95 NLFDLGGQYLRVGRAIT 111
N +++GG+ LRV A T
Sbjct: 74 NGYEIGGRTLRVDNACT 90
>gi|102269210|gb|ABF55966.2| cleavage stimulation factor 64-kDa subunit [Bombyx mori]
Length = 326
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
+ QS++D K ++V +I + TEE +K +F GP+ KL + KGY
Sbjct: 8 EEQSIMD------KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGY 61
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
GF EY+ ++ + A+ ++N +++GG+ LRV A T
Sbjct: 62 GFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACT 96
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H D+ E ++ +F FG I K+ + S H +G+GF+ +E
Sbjct: 182 ELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGH-SRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A++ MN ++ G+ L VGRA
Sbjct: 241 HEDAQKAVTDMNGKEVSGRLLYVGRA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG 99
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+ AI +M
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVV--CDDHGSRGFGFVHFETHEAAQNAIRTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|427798067|gb|JAA64485.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15, partial [Rhipicephalus pulchellus]
Length = 377
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I + TEE +K +F GP+ +L + KGYGF EY+ ++ + A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAMRNL 77
Query: 95 NLFDLGGQYLRVGRAIT 111
N FDL G+ LRV A +
Sbjct: 78 NAFDLNGRPLRVDNAAS 94
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + IY+ + ++ +E +K VF +G K+
Sbjct: 225 VFVGRFKNRKDREA---ELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMT 281
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 282 DSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 323
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 130 NFDIIKGKSIRL 141
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E +++ F +FG I
Sbjct: 320 VGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR 379
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ Q + KG+G I + + + + +A++ MN LG + L + A
Sbjct: 380 VKVMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I K+ S KGY F+ ++ + A++ AI M
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 95 NLFDLGGQYLRVGR 108
N L G + VGR
Sbjct: 216 NGKLLKGCKVFVGR 229
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H D+ E+ ++ +F FG + K+ + S H +G+GF+ +E
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A++ MN ++ G+ L VGRA
Sbjct: 241 HEEAQKAVTDMNGKEVRGRLLYVGRA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIRGQPIRIMWSQRDPGLRKSGVG 99
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+ +AI +M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVV--CDNHGSRGFGFVHFETHEAAQQAIVTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|324510042|gb|ADY44204.1| Nucleolysin TIAR [Ascaris suum]
Length = 367
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 19 QSVIDEITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYG 77
+ DE+ + N +YV ++H TEED++ F + G I ++ + +GY
Sbjct: 224 EQTFDEVFNATRADNTSVYVGNVHSSTTEEDLREAFASIGAISEVRI------FKQQGYA 277
Query: 78 FIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
F+ Y TK+A+ AI MN ++ GQ ++ TP
Sbjct: 278 FVRYATKEAATRAIMQMNGKEINGQNIKCSWGRTP 312
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + ++ +K+ F A+G I K+ + + KGYGF+ + +K+++ +AI+ M
Sbjct: 136 VFVGDLATEIDNNALKAAFAAYGEISEAKVIRDPQTMKSKGYGFVSFPSKESAEKAIAGM 195
Query: 95 NLFDLGGQYLRVGRAITPP 113
N +G + +R A P
Sbjct: 196 NGQLIGRRQIRTNWASRKP 214
>gi|209878175|ref|XP_002140529.1| splicing factor, CC1-like family domain-containing protein
[Cryptosporidium muris RN66]
gi|209556135|gb|EEA06180.1| splicing factor, CC1-like family domain-containing protein
[Cryptosporidium muris RN66]
Length = 555
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 44 LTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQY 103
LTE++I +F FGPIK ++ + +H+G+ ++ ++ +EA+ ++N +++ GQ
Sbjct: 314 LTEDEINKLFRTFGPIKSVEIPRDPHTDKHQGFAYVTFQKTIDGHEAMRALNNYEIAGQR 373
Query: 104 LRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAA--AATAKIQAMDGG 150
+ V ++ P ++S G S + M A +++ T K++ +DGG
Sbjct: 374 ITVALSVDTPT--NNSIGSTSSINVMSYAPSISIDLYGDTEKLEDVDGG 420
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ +YV +I PD+T+++ + +FE FG + L + + +G+GF+ + T +A+ +A+
Sbjct: 239 FTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQE-GKPRGFGFVNFTTHEAAFKAV 297
Query: 92 SSMNLFDLGGQYLRVGRA 109
+N D GQ L VGRA
Sbjct: 298 EDLNGKDFRGQELYVGRA 315
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + + KGYGF+ YET +A+ +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAAAQAIKHV 207
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 208 NGMLLNEKKVYVG 220
>gi|308487674|ref|XP_003106032.1| CRE-RNP-4 protein [Caenorhabditis remanei]
gi|308254606|gb|EFO98558.1| CRE-RNP-4 protein [Caenorhabditis remanei]
Length = 142
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +IH + TE+D+ F +G IK L KGY +EYET++ +NEAI
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIEQS 116
Query: 95 NLFDLGGQYLRV 106
N DL GQ ++V
Sbjct: 117 NETDLLGQNVKV 128
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ +TE +++ VF +FG + K+ + +R KG+GF+E + + + +AI
Sbjct: 4 IYVGNLSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGT 63
Query: 95 NLFDLGGQYLRVGRA 109
N ++GG+ LRV A
Sbjct: 64 NGKEVGGRALRVNEA 78
>gi|223039621|ref|ZP_03609908.1| RNA-binding region RNP-1 [Campylobacter rectus RM3267]
gi|222879192|gb|EEF14286.1| RNA-binding region RNP-1 [Campylobacter rectus RM3267]
Length = 81
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ +TE ++K F FG +K K+ + +R KG+GF+E E + +AI ++
Sbjct: 3 IYVGNLSYRMTEAELKDTFAPFGEVKRAKIVKDRDTNRSKGFGFVEMENDADALKAIEAL 62
Query: 95 NLFDLGGQYLRV 106
N ++GG+ LRV
Sbjct: 63 NNKEVGGRALRV 74
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H D+ E+ ++ +F FG + K+ + S H +G+GF+ +E
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ +MN ++ G+ L VGRA
Sbjct: 241 HEEAQKAVVNMNGREVSGRLLYVGRA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG 99
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+ AIS+M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVV--CDEHGSRGFGFVHFETHEAAQNAISTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|302142161|emb|CBI19364.3| unnamed protein product [Vitis vinifera]
Length = 377
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 2 QHF---PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGP 58
QHF V+V R N + Q +D +I+V + +LTEE+ K+ FE FG
Sbjct: 68 QHFIQGQRVEVKRAMN--KGQRNLDGSGNNNFTSKKIFVGGLSSNLTEEEFKNYFERFGR 125
Query: 59 IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110
I + S+ R +G+GFI +E+++ S E + N ++L G+ + V RA+
Sbjct: 126 ITDVVVMHDSATRRPRGFGFITFESEE-SVEHVMQNNFYELNGKRVEVKRAV 176
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
V VG + + QS IDE + + IYV ++ D+TE + + +FE FG I LQ
Sbjct: 310 QVFVGHHISRKERQSQIDEARAQ---FTNIYVKNLDTDITEAEFRVMFEEFGNITSAVLQ 366
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +G+GF+ YE + + A++ M+ ++ G+ L VGRA
Sbjct: 367 T-DNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGKVLFVGRA 409
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F AFG + CK+ + + +GYG++ YET +++ AI ++
Sbjct: 243 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDET-GKSRGYGYVHYETAESAEAAIKAV 301
Query: 95 NLFDLGGQYLRVGRAIT 111
N L + + VG I+
Sbjct: 302 NRMLLNDKQVFVGHHIS 318
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNR-------IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + QS + E AK + +YV ++ D+ ++ +++ FEAFG I
Sbjct: 406 VGRAQKKSERQSELARSHEAAKQERQNKYAGVNLYVKNLDDDVDDDKLRAEFEAFGTITS 465
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
CK+ + KG+GF+ + T + +A++ MN +G + L V A
Sbjct: 466 CKVMRNER-DISKGFGFVCFSTPDEATKAVTEMNNKMIGTKPLYVSLA 512
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ ++ D+ +E ++ +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN DL G+ + VGRA
Sbjct: 241 HEDARKAVEEMNGKDLNGKQIYVGRA 266
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + F AFG I CK+ + GS KGYGF+ +ET++ + AI
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEEAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + VGR
Sbjct: 156 EKMNGMFLNDHKVFVGR 172
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY + ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 15 MPQAQSVIDEITEEAKLYNR---IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
M Q + I+ + ++ + + +YV ++ + +E ++ F FG I K+
Sbjct: 283 MKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGG-- 340
Query: 72 RHKGYGFIEYETKQASNEAISSMN 95
R KG+GF+ + + + + +A++ MN
Sbjct: 341 RSKGFGFVCFSSPEEATKAVTEMN 364
>gi|241997552|ref|XP_002433425.1| RNA recognition motif-containing protein [Ixodes scapularis]
gi|215490848|gb|EEC00489.1| RNA recognition motif-containing protein [Ixodes scapularis]
Length = 466
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I + TEE +K +F GP+ +L + KGYGF EY+ ++ + A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAMRNL 77
Query: 95 NLFDLGGQYLRVGRAIT 111
N FDL G+ LRV A +
Sbjct: 78 NAFDLNGRPLRVDNAAS 94
>gi|374314656|ref|YP_005061084.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350300|gb|AEV28074.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 92
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+IYV ++ + TE+D++ +F +G + + R KG+GF+E E A++ AIS
Sbjct: 4 KIYVGNMSYNTTEDDLRELFSQYGNVLSATIIMDRETRRPKGFGFVEMEENSAADAAISQ 63
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSS 119
++ ++ G+ LRV AI P +S+
Sbjct: 64 LDGKEIDGRNLRVNEAIAKPRNEYSN 89
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++GG+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEIGGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ +YV +I D T+E+ + +FE FG I L + S + +G+GF+ + + +++ A+
Sbjct: 234 FTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAV 293
Query: 92 SSMNLFDLGGQYLRVGRA 109
++N D Q L VGRA
Sbjct: 294 DNLNEKDFKSQKLYVGRA 311
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+ AI
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAAQNAI 199
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L + + VG I
Sbjct: 200 KHVNGMLLNDKKVFVGHHI 218
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ ++ D+ +E ++ +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN DL G+ + VGRA
Sbjct: 241 HEDARKAVEEMNGKDLNGKQIYVGRA 266
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + F AFG I CK+ + GS KGYGF+ +ET++ + AI
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEEAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + VGR
Sbjct: 156 EKMNGMFLNDHKVFVGR 172
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY + ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 15 MPQAQSVIDEITEEAKLYNR---IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
M Q + I+ + ++ + + +YV ++ + +E ++ F FG I K+
Sbjct: 283 MKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGG-- 340
Query: 72 RHKGYGFIEYETKQASNEAISSMN 95
R KG+GF+ + + + + +A++ MN
Sbjct: 341 RSKGFGFVCFSSPEEATKAVTEMN 364
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + +LT+E +K +FE +G I ++ ++ +G+GF+ +E
Sbjct: 174 ELGEKAKLFTNVYVKNFGDELTDESLKEMFEKYGTITSHRVM--IKENKSRGFGFVAFEN 231
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+++ A+ +N +LG G+ L VGRA
Sbjct: 232 PESAEVAVQELNGKELGDGKVLYVGRA 258
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ ++ + + F AFG I CK+ Q + KGYGF+ +ET++++N +I +
Sbjct: 92 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGN-SKGYGFVHFETEESANTSIEKV 150
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VGR I
Sbjct: 151 NGMLLNAKKVFVGRFI 166
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F + GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 64 NFDLIKGRPIRIMWSQRDPSLRKSGVG 90
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q + E+ K+ +YV ++ + +E ++ F FG I
Sbjct: 255 VGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITS 314
Query: 62 CK--LQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K L++G R KG+GF+ + + + +A++ MN +G + L V A
Sbjct: 315 AKVMLEEG----RSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALA 360
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGR N ++ E+ + + +YV + D+ +E +K VF +G K+ S
Sbjct: 268 VGRFKNRKDREA---ELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDS 324
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ KG+GF+ +++ +A+ +A+ MN D+ GQ L VGRA
Sbjct: 325 G-GKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRA 364
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E + F +FG I
Sbjct: 361 VGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISR 420
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP---PNALH 117
K+ + R KG+G I + + + + +A++ MN LG + L + A P N LH
Sbjct: 421 VKIMR--EEGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQRPXERKNFLH 477
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 24 EITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYE 82
E+ EAK +YV + D+TE+ + F A GP+ ++ + R GY ++ +
Sbjct: 99 EMNVEAKYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFL 158
Query: 83 TKQASNEAISSMNLFDLGGQYLRV 106
+ +A+ +MN + G+ +R+
Sbjct: 159 KLADAQKALDTMNFDMIKGKPIRL 182
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H D+ E+ ++ +F FG + K+ + S H +G+GF+ +E
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ +MN ++ G+ L VGRA
Sbjct: 241 HEEAQKAVVNMNGREVSGRLLYVGRA 266
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+ AIS+M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVV--CDEHGSRGFGFVHFETHEAAQNAISTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + PD+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG 99
>gi|15237666|ref|NP_196048.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20260152|gb|AAM12974.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|21387121|gb|AAM47964.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|332003340|gb|AED90723.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 310
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASN 88
AK +RI+V + P++T+ D++ F FG I C++ R +G+GFI + ++A +
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 89 EAISSMNLFDLGGQYLRVGRA 109
E+I M+ D G + + V RA
Sbjct: 63 ESIREMHGRDFGDRVISVNRA 83
>gi|348522243|ref|XP_003448635.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Oreochromis niloticus]
Length = 387
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T ED+K+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 98 VFVGDLSPEITTEDVKAAFGPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQHM 157
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP T+H
Sbjct: 158 GGQWLGGRQIRTNWATRKP--------PAPKTTH 183
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+YV ++ D+TE I VF GP K CK+ G+ P Y F+E+ + + ++
Sbjct: 10 LYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVDTAGNDP-----YCFVEFYDHRHAAASL 64
Query: 92 SSMNLFDLGGQYLRVGRAITP 112
++MN + G+ ++V A TP
Sbjct: 65 AAMNGRKIMGKEVKVNWATTP 85
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 22 IDEITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIE 80
DE+ ++ N +Y + LTE+ ++ F FG I ++ KGY F+
Sbjct: 192 FDEVVNQSSPSNCTVYCGGVSTGLTEQLMRQTFSPFGQIMEVRV------FPDKGYSFVR 245
Query: 81 YETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHS-SKGPAPSTSHMPTAAA 134
+ + +++ AI S+N + G ++ P+ ++S + P P + M AAA
Sbjct: 246 FNSHESAAHAIVSVNGSSIEGHIVKCYWGKETPDMMNSMQQMPVPQQNKMGFAAA 300
>gi|410929559|ref|XP_003978167.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Takifugu rubripes]
Length = 385
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T +DIK+ F FG I C++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTDDIKAAFGPFGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPP 113
LGG+ +R A P
Sbjct: 157 GGQWLGGRQIRTNWATRKP 175
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ ++ H Y F+E+ + + I++M
Sbjct: 9 LYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDP--YCFVEFYEHRHATATIAAM 66
Query: 95 NLFDLGGQYLRVGRAITP 112
N + G+ ++V A TP
Sbjct: 67 NGRKILGKEVKVNWATTP 84
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F +G K+ SS + KG+GF+ +E
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSS-GKSKGFGFVSFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN D+ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPDEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|255322500|ref|ZP_05363645.1| RNA-binding region RNP-1 [Campylobacter showae RM3277]
gi|255300408|gb|EET79680.1| RNA-binding region RNP-1 [Campylobacter showae RM3277]
Length = 81
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ +TE ++K F FG +K K+ + +R KG+GF+E E + +AI ++
Sbjct: 3 IYVGNLSYRMTEAELKDTFAPFGEVKRAKIVKDRDTNRSKGFGFVEIENDADALKAIEAL 62
Query: 95 NLFDLGGQYLRV 106
N ++GG+ LRV
Sbjct: 63 NNKEVGGRALRV 74
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++ D+ E+ ++ +F FG + K+ + SS H +G+GF+ +ET
Sbjct: 182 ELGARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGH-SRGFGFVNFET 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ G+ L VGRA
Sbjct: 241 HEEAQKAVVHMNGKEVSGRLLYVGRA 266
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEMIKGQPIRIMWSQRDPGLRKSGVG 99
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+ AI++M
Sbjct: 101 IFIKNLEASIDNKALYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQHAINTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + VG
Sbjct: 159 NGMLLNDHKVFVG 171
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASN 88
+ +YV +I PD+T+ + + +FE +G + L Q+G S +G+GF+ + T +A+
Sbjct: 239 FTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKS----RGFGFVNFTTHEAAY 294
Query: 89 EAISSMNLFDLGGQYLRVGRA 109
+A+ +N D GQ L VGRA
Sbjct: 295 KAVDELNGNDFRGQELYVGRA 315
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+ +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDET-GASKGYGFVHYETDEAAAQAIKHV 207
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 208 NGMLLNEKKVYVG 220
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 34/72 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F G + ++ + + R GY ++ Y + +A+ +
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 121 NYTPIKGRPCRI 132
>gi|194334049|ref|YP_002015909.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
gi|194311867|gb|ACF46262.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
Length = 90
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IY+ ++ +TEED++ F FG + + R KG+GF+E + +NEAI S+
Sbjct: 3 IYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIESL 62
Query: 95 NLFDLGGQYLRVGRA 109
N DL G+ ++V A
Sbjct: 63 NDTDLNGRTIKVNEA 77
>gi|328715702|ref|XP_003245699.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 2
[Acyrthosiphon pisum]
gi|328715706|ref|XP_003245700.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 3
[Acyrthosiphon pisum]
Length = 420
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 18 AQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYG 77
A +V+ ++T ++ I+V + P++ + ++ F FG I C++ + + KGYG
Sbjct: 47 ATAVVPQMTINKSEHHHIFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYG 106
Query: 78 FIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPST 126
F+ + K + AI++MN LG + +R A P L + P T
Sbjct: 107 FVSFLKKAEAESAIAAMNGQWLGSRSIRTNWATRKPPTLKTDSNTKPLT 155
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 21 VIDEITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFI 79
DE+ ++ N +Y + LT+E ++ F FG I+ ++ + KGY F+
Sbjct: 155 TFDEVYNQSSPTNCTVYCGGLTSGLTDELVQKTFAPFGNIQEIRV------FKDKGYAFV 208
Query: 80 EYETKQASNEAISSMNLFDLGGQYLRV------GRAITPPNA--LHSSKGPAPSTSHMPT 131
+ TK+++ AI +++ D+ GQ ++ G I NA + SS+ ST T
Sbjct: 209 RFATKESATHAIVAVHNSDINGQPVKCSWGKESGEPIVSQNASQVCSSQAALSSTQFPYT 268
Query: 132 AAA 134
AAA
Sbjct: 269 AAA 271
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VG + + QS IDE+ + + +Y+ +I P++T+E+ +++F G + +Q+
Sbjct: 204 VYVGHHISRKERQSKIDEMKAQ---FTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQR 260
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
R +G+GF+ YET + + +A+ ++N D G+ L V RA
Sbjct: 261 -DEEGRSRGFGFVNYETHEEAQKAVDNLNDKDFHGRKLFVSRA 302
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG + CK+ + G+S KGYGF+ YET +A+ AI
Sbjct: 136 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNS----KGYGFVHYETAEAAENAI 191
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
++N L + + VG I+
Sbjct: 192 KNVNGMLLNDKKVYVGHHIS 211
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+ +E +++ FE FG I K+ + KG+GF+ Y + + +++A++ M
Sbjct: 332 LYVKNLDDDVDDEKLRAEFEPFGTITSAKVMR-DDKGVSKGFGFVCYSSPEEASKAVAEM 390
Query: 95 NLFDLGGQYLRVGRA 109
N +G + L V A
Sbjct: 391 NNKMIGSKPLYVSHA 405
>gi|357627631|gb|EHJ77269.1| hypothetical protein KGM_03087 [Danaus plexippus]
Length = 425
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I + TEE +K +F GP+ KL + KGYGF EY+ ++ + A+ ++
Sbjct: 8 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 67
Query: 95 NLFDLGGQYLRVGRAIT 111
N +++GG+ LRV A T
Sbjct: 68 NGYEIGGRSLRVDNACT 84
>gi|225458908|ref|XP_002283509.1| PREDICTED: uncharacterized protein LOC100255821 [Vitis vinifera]
Length = 471
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 2 QHF---PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGP 58
QHF V+V R M + Q +D +I+V + +LTEE+ K+ FE FG
Sbjct: 68 QHFIQGQRVEVKRA--MNKGQRNLDGSGNNNFTSKKIFVGGLSSNLTEEEFKNYFERFGR 125
Query: 59 IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110
I + S+ R +G+GFI +E+++ S E + N ++L G+ + V RA+
Sbjct: 126 ITDVVVMHDSATRRPRGFGFITFESEE-SVEHVMQNNFYELNGKRVEVKRAV 176
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + DLTEE + +FE +G I ++ R G+GF+ +E
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKDGKSR--GFGFVAFEN 240
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
A+ A+ +N +L G+ L VGRA
Sbjct: 241 PDAAERAVQELNAKELSDGKVLYVGRA 267
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ +ET++++N +I +
Sbjct: 101 VFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQ-DEKGQSKGYGFVHFETEESANTSIEKV 159
Query: 95 NLFDLGGQYLRVGRAIT 111
N L + + VGR I+
Sbjct: 160 NGMLLNEKKVFVGRFIS 176
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F + GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDTIKGRPIRIMWSQRDPSLRKSGVG 99
>gi|147795790|emb|CAN67607.1| hypothetical protein VITISV_004303 [Vitis vinifera]
Length = 507
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 2 QHF---PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGP 58
QHF V+V R M + Q +D +I+V + +LTEE+ K+ FE FG
Sbjct: 68 QHFIQGQRVEVKRA--MNKGQRNLDGSGNNNFTSKKIFVGGLSSNLTEEEFKNYFERFGR 125
Query: 59 IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110
I + S+ R +G+GFI +E+++ S E + N ++L G+ + V RA+
Sbjct: 126 ITDVVVMHDSATRRPRGFGFITFESEE-SVEHVMQNNFYELNGKRVEVKRAV 176
>gi|321479154|gb|EFX90110.1| hypothetical protein DAPPUDRAFT_299933 [Daphnia pulex]
Length = 381
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
Q VID K ++V +I D+TEE +K +F GP+ K+ + KGYGF
Sbjct: 6 QVVID------KSLRSVFVGNIPYDVTEEKLKDIFSEAGPVVSFKIVYDRETGKPKGYGF 59
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
EY ++ + A+ ++N +++ G+ LRV A T
Sbjct: 60 CEYRDQETALCAMRNLNGYEIAGRTLRVDNACT 92
>gi|237832541|ref|XP_002365568.1| peptidyl-prolyl cis-trans isomerase E, putative [Toxoplasma gondii
ME49]
gi|211963232|gb|EEA98427.1| peptidyl-prolyl cis-trans isomerase E, putative [Toxoplasma gondii
ME49]
gi|221488019|gb|EEE26233.1| dc50, putative [Toxoplasma gondii GT1]
gi|221508540|gb|EEE34109.1| fuse-binding protein-interacting repressor siahbp1, putative
[Toxoplasma gondii VEG]
Length = 145
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
Q Q+ + T E +L +YV + + EE +++ F FG IK ++ + + H+G+
Sbjct: 5 QGQTSLLANTGEERLKRTLYVGGLAEQVEEEVLRAAFLPFGDIKQLEIPKDKTTGLHRGF 64
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
GF+E+E + + EA+ +M+ +L G+ LRV L S G AP + +
Sbjct: 65 GFVEFEEEDDAKEAMENMDNAELYGRTLRVN--------LSRSGGFAPGSRN 108
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASN 88
+ IYV +I P+ T+++ +++FE +G I L Q+G S +G+GF+ Y + +N
Sbjct: 236 FTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKS----RGFGFVNYIRHEDAN 291
Query: 89 EAISSMNLFDLGGQYLRVGRA 109
+A+ +N D GQ L VGRA
Sbjct: 292 KAVEELNNSDFKGQALYVGRA 312
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+N AI S+
Sbjct: 146 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETAEAANSAIKSV 204
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 205 NGMLLNEKKVFVGHHI 220
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +YV +I D+TE+D + +FE +G + L Q+G S +G+GF+ +
Sbjct: 233 EEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKS----RGFGFVNFT 288
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T +++++A+ +N D GQ L VGRA
Sbjct: 289 THESASKAVDELNNKDFHGQDLYVGRA 315
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+++AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDET-GASKGYGFVHYETDEAASQAIKHV 207
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 208 NGMLLNEKKVYVGHHI 223
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + + +E +K FE +G I K+ + KG+GF+ +ET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEEFDDEKLKDFFEPYGKITSYKV-MSKEDGKSKGFGFVAFET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGEGKSLYVARA 259
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDRQIDNKAIYDTFSAFGNILSCKVALDEKGNS----KGYGFVHFETEEAANTSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 EKVNGMLLNGKKVYVGKFI 166
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+ E + F + GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDL 99
N FDL
Sbjct: 64 N-FDL 67
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
V VG+ + +S +E+ + +YV +I +EE+++++FE +G I L+
Sbjct: 207 EVYVGKHVSKKDRESKFEEMKAN---FTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLE 263
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ + + KG+GF+ +E+ +A+ +A+ +N D+ GQ L VGRA
Sbjct: 264 KDAE-GKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRA 306
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++HP + + + F AFG I CK+ +QG+S K +GF+ YET +A+ AI
Sbjct: 140 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNS----KCFGFVHYETAEAARAAI 195
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
++N L + + VG+ ++
Sbjct: 196 ENVNGMLLNDREVYVGKHVS 215
>gi|209528246|ref|ZP_03276711.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376004999|ref|ZP_09782569.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|423065550|ref|ZP_17054340.1| RNP-1 like RNA-binding protein [Arthrospira platensis C1]
gi|209491318|gb|EDZ91708.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375326593|emb|CCE18322.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|406712993|gb|EKD08168.1| RNP-1 like RNA-binding protein [Arthrospira platensis C1]
Length = 100
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ ++TEED+ +VF +G +K KL R +G+GF+E +T+ AI ++
Sbjct: 3 IYVGNLSYEVTEEDLTAVFAEYGAVKRVKLPTDRETGRMRGFGFVEMDTEAEEQSAIDAL 62
Query: 95 NLFDLGGQYLRVGRA 109
+ + G+ LRV +A
Sbjct: 63 DGAEWCGRDLRVNKA 77
>gi|47228429|emb|CAG05249.1| unnamed protein product [Tetraodon nigroviridis]
Length = 411
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T +DIK+ F FG I C++ + + + KGYGF+ + K + AI M
Sbjct: 88 VFVGDLSPEITTDDIKAAFGPFGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 147
Query: 95 NLFDLGGQYLRVGRAITPP 113
LGG+ +R A P
Sbjct: 148 GGQWLGGRQIRTNWATRKP 166
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
YV ++ D+TE I +F GP K CK+ ++ H Y F+E+ + + I++MN
Sbjct: 1 YVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAG--HDPYCFVEFYEHRHATATIAAMN 58
Query: 96 LFDLGGQYLRVGRAITP 112
+ G+ ++V A TP
Sbjct: 59 GRKILGKEVKVNWATTP 75
>gi|365153971|ref|ZP_09350405.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
gi|158605004|gb|EAT99377.3| 31 kDa ribonucleoprotein, (RNA-binding proteinRNP-T) (RNA-binding
protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)
[Campylobacter concisus 13826]
gi|363650683|gb|EHL89770.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
Length = 81
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ TE ++K F FG ++ K+ + R KG+GF+E + +AI ++
Sbjct: 3 IYVGNLSYRTTEAELKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAIDAL 62
Query: 95 NLFDLGGQYLRVGRA 109
N +LGG+ LRV A
Sbjct: 63 NEKELGGRTLRVNEA 77
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
EE K + IYV +I D+T++D +++FE FG + L + + +G+GF+ + + +
Sbjct: 235 EEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
+++A+ +N + GQ L VGRA
Sbjct: 295 DASKAVEELNEKEFHGQNLYVGRA 318
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+++AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAIKHV 209
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 210 NGMLLNEKKVYVGHHI 225
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F G + ++ + + R GY ++ Y T +A+ +
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALDEL 122
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 123 NYTLIKGRPCRI 134
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +YV +I P+ TE+D + +FE +G + L Q+G S +G+GF+ +
Sbjct: 234 EEMKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKS----RGFGFVNFT 289
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T +++ +A+ +N D GQ L VGRA
Sbjct: 290 THESAAKAVDELNGKDFRGQDLYVGRA 316
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + + KGYGF+ YET +A+ +AI +
Sbjct: 150 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAAAQAIKHV 208
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 209 NGMLLNEKKVYVGHHI 224
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F+ +G K+ S + +G+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPS-GKSRGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN +L G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGTELNGKTVFVGRA 266
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GP+ ++ + R GY ++ + + A+ +M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVG 99
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L++G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H D+ E+ ++ +F FG + K+ + S H +G+GF+ +E
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGH-SRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ +MN ++ G+ L VGRA
Sbjct: 241 HEEAQKAVVNMNGREVSGRLLYVGRA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG 99
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+ AIS+M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVV--CDEHGSRGFGFVHFETHEAAQNAISTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|294896462|ref|XP_002775569.1| RNA recognition motif containing protein, putative [Perkinsus
marinus ATCC 50983]
gi|239881792|gb|EER07385.1| RNA recognition motif containing protein, putative [Perkinsus
marinus ATCC 50983]
Length = 361
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V ++ D+ EE +KS+F GP+ +L R KGYGF EY ++ + A+ ++
Sbjct: 11 VFVGNVPYDVDEEQLKSIFSTVGPVVSFRLMHDKVTGRPKGYGFCEYADQETAYAAMRNL 70
Query: 95 NLFDLGGQYLRVGRA 109
N + GG+ LRV A
Sbjct: 71 NNVECGGRPLRVDWA 85
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
V VG+ + +S +E+ + +YV +I +EE+++ +FE +G I L+
Sbjct: 207 EVYVGKHVSKKDRESKFEEMKAN---FTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLE 263
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ + + KG+GF+ +E+ +A+ +A+ +N D+ GQ L VGRA
Sbjct: 264 KDAE-GKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRA 306
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++HP + + + F AFG I CK+ +QG+S K +GF+ YET +A+ AI
Sbjct: 140 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNS----KCFGFVHYETAEAAKAAI 195
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
++N L + + VG+ ++
Sbjct: 196 ENVNGMLLNDREVYVGKHVS 215
>gi|452851769|ref|YP_007493453.1| putative RNA-binding protein rbpE [Desulfovibrio piezophilus]
gi|451895423|emb|CCH48302.1| putative RNA-binding protein rbpE [Desulfovibrio piezophilus]
Length = 87
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ TEED+++ FEA+G + KL R +G+GF+E E Q + EAI ++
Sbjct: 5 IYVGNLPWSSTEEDVRATFEAYGEVYSVKLINDRETGRPRGFGFVEMED-QGALEAIENL 63
Query: 95 NLFDLGGQYLRVGRAITPP 113
+ D GG+ L+V A P
Sbjct: 64 DGKDFGGRNLKVNEARPRP 82
>gi|327267754|ref|XP_003218664.1| PREDICTED: nucleolysin TIAR-like [Anolis carolinensis]
Length = 342
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTA 132
LGG+ +R A P PAP T+ T
Sbjct: 120 GGQWLGGRQIRTNWATRKP--------PAPKTTQESTT 149
>gi|17537143|ref|NP_496718.1| Protein TIAR-2 [Caenorhabditis elegans]
gi|6425313|emb|CAB60356.1| Protein TIAR-2 [Caenorhabditis elegans]
Length = 434
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 17 QAQSVIDEITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKG 75
Q++ DEI +A N +YV +I +L E++I+ F+ FGPI + + +G
Sbjct: 239 QSEKTYDEIFNQAAADNTSVYVGNI-ANLGEDEIRRAFDRFGPINEVRT------FKIQG 291
Query: 76 YGFIEYETKQASNEAISSMNLFDLGGQYLRV 106
Y F+++ETK+++ AI MN D+GGQ +R
Sbjct: 292 YAFVKFETKESAARAIVQMNNADIGGQIVRC 322
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + ++ ++ F FG + K+ + ++ ++ KGYGF+ Y ++ + AI M
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 95 NLFDLGGQYLRVGRAITPP 113
N LG + +R A P
Sbjct: 194 NGAWLGRRTIRTNWATRKP 212
>gi|392404677|ref|YP_006441289.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390612631|gb|AFM13783.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 141
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ + T+E+++S FEAFG + K+ + R +G+ F+E E + + A++ M
Sbjct: 3 IYVGNLAYNATDEELRSAFEAFGQVTSVKIVRDRDTGRSRGFAFVEMEDGEGAQNAVAEM 62
Query: 95 NLFDLGGQYLRVGRA 109
N DL G+ L V A
Sbjct: 63 NGKDLKGRNLVVNEA 77
>gi|313219857|emb|CBY30773.1| unnamed protein product [Oikopleura dioica]
Length = 219
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
++VGRP+ I+E ++K IYVA I PD+ + DI+ +F FG IK +L +
Sbjct: 143 IKVGRPTQAQPYLKTIEEAVYDSKRSTCIYVAGIQPDMDDTDIRDLFSPFGEIKKMQLTK 202
Query: 67 GSSPHRHKGYGFIEY 81
+ +KG FIEY
Sbjct: 203 DDVSNVNKGNAFIEY 217
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L +++++ SI +++E ++ F FG I L +HKG+ FI +E +A+ A
Sbjct: 70 LMSQVFIGSIFYEVSEVQLRDAFSPFGIINVVNLNLDPVTGKHKGFAFIWFELAEAAQLA 129
Query: 91 ISSMNLFDLGGQYLRVGR 108
I MN ++ G+ ++VGR
Sbjct: 130 IEQMNGANMWGRPIKVGR 147
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 150 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 208
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+++ VGRA
Sbjct: 209 HEDAQKAVDEMNGKELNGKHIYVGRA 234
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
H+ VGR + Q+ + E+ K +RI YV ++ D+ +E ++ F FG
Sbjct: 228 HIYVGRAQKKVERQTELKRKFEQMK-QDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFG 286
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 287 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 322
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R Y ++ ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
>gi|388583572|gb|EIM23873.1| splicing factor, CC1-like protein [Wallemia sebi CBS 633.66]
Length = 459
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
LY ++YV S+ L E D++SVFE FG I+ +L +R KGY +++Y+ + S A
Sbjct: 224 LY-KVYVGSLSYTLKEYDVRSVFEPFGEIEDVELS-VDDQNRSKGYAYVKYKRMEDSRMA 281
Query: 91 ISSMNLFDLGGQYLRV 106
MN F+L G+ L+V
Sbjct: 282 CEQMNRFELAGRTLKV 297
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D+T++ +K +FE +G I K+ + +G+GF+ +E
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKV-MSKDDGKSRGFGFVAFED 241
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
A++ A++ +N ++ G+ + VGRA
Sbjct: 242 PNAADRAVADLNGKEIAEGKIMYVGRA 268
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ ++ + + F AFG I C++ Q S KGYGF+ +ET++A+N++I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQDESGS-SKGYGFVHFETEEAANKSIDRV 159
Query: 95 NLFDLGGQYLRVGRAIT 111
N L G+ + VG+ I+
Sbjct: 160 NGMLLNGKKVYVGKFIS 176
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F + GP+ ++ + + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRRSGVG 99
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKL--YNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q + E+ K+ NR +YV ++ + +E ++ F FG I
Sbjct: 265 VGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 324
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ R KG+GF+ + + + +A++ MN +G + L V A
Sbjct: 325 VKVMMEDG--RSKGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVALA 370
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 117 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 175
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 176 HEDAQKAVDEMNGKELNGKQIYVGRA 201
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 36 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 90
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 91 EKMNGMLLNDRKVFVGR 107
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 231 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 288
Query: 95 N 95
N
Sbjct: 289 N 289
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 145 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 203
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 204 HEDAQKAVDEMNGKELNGKQIYVGRA 229
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 64 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 118
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 119 EKMNGMLLNDRKVFVGR 135
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 259 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 316
Query: 95 N 95
N
Sbjct: 317 N 317
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERVS 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 111 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 169
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 170 HEDAQKAVDEMNGKELNGKQIYVGRA 195
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 84
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 85 EKMNGMLLNDRKVFVGR 101
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 225 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 282
Query: 95 N 95
N
Sbjct: 283 N 283
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+++ VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I CK+ + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGTLLNDRKVFVGR 172
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R Y ++ ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVG 99
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
H+ VGR + Q+ + E+ K +RI YV ++ D+ +E ++ F FG
Sbjct: 260 HIYVGRAQKKVERQTELKRKFEQMK-QDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 272 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 330
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 331 HEDAQKAVDEMNGKELNGKQIYVGRA 356
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 191 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 245
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 246 EKMNGMLLNDRKVFVGR 262
>gi|308490983|ref|XP_003107683.1| CRE-CPF-2 protein [Caenorhabditis remanei]
gi|308250552|gb|EFO94504.1| CRE-CPF-2 protein [Caenorhabditis remanei]
Length = 345
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I D+TEE I+++F G + K+ + KGYGFIE+ ++ AI +
Sbjct: 20 VFVGNISYDVTEETIRAIFAKAGHVMSIKMVHDRETGKPKGYGFIEFPDINTADTAIRVL 79
Query: 95 NLFDLGGQYLRVGRAITPPNALH---SSKGPAPSTSHMPTAAAVAAAAATAKI 144
N ++LGG+ LRV A N ++ GPAP + P A A +I
Sbjct: 80 NGYELGGRVLRVDSAAGGMNMEEFGSTNTGPAPVEEN-PYGPECDAGKAPERI 131
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 349 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 407
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 408 HEDAQKAVDEMNGKELNGKQIYVGRA 433
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 268 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 322
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 323 EKMNGMLLNDRKVFVGR 339
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 463 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 520
Query: 95 N 95
N
Sbjct: 521 N 521
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D+T++ +K +FE +G I K+ + +G+GF+ +E
Sbjct: 183 ELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKV-MSKDDGKSRGFGFVAFED 241
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
A+ +A+ +N D+ G+ + VGRA
Sbjct: 242 PDAAEQAVLELNGKDISEGKCMYVGRA 268
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ ++ + + F AFG I CK+ Q S KGYGF+ +ET++A+N++I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDES-GASKGYGFVHFETEEAANKSIDKV 159
Query: 95 NLFDLGGQYLRVGRAI 110
N L G+ + VG+ I
Sbjct: 160 NGMLLNGKKVYVGKFI 175
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F + GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG 99
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKL--YNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q + E+ K+ NR +YV ++ + +E ++ F FG I
Sbjct: 265 VGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITS 324
Query: 62 CK--LQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K +++G R KG+GF+ + + + +A++ MN +G + L V A
Sbjct: 325 AKVMMEEG----RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALA 370
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 123 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 181
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 182 HEDAQKAVDEMNGKELNGKQIYVGRA 207
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 42 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 96
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 97 EKMNGMLLNDRKVFVGR 113
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 237 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 294
Query: 95 N 95
N
Sbjct: 295 N 295
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 111 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 169
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 170 HEDAQKAVDEMNGKELNGKQIYVGRA 195
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 84
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 85 EKMNGMLLNDRKVFVGR 101
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 225 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 282
Query: 95 N 95
N
Sbjct: 283 N 283
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 111 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 169
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 170 HEDAQKAVDEMNGKELNGKQIYVGRA 195
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 84
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 85 EKMNGMLLNDRKVFVGR 101
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 225 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 282
Query: 95 N 95
N
Sbjct: 283 N 283
>gi|403223876|dbj|BAM42006.1| uncharacterized protein TOT_040000383 [Theileria orientalis strain
Shintoku]
Length = 478
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQA 86
+E + N+IY+ ++ P T +DI++VF +FG I ++ KG+ FIEY K++
Sbjct: 147 DEGQQNNKIYIGALDPGCTIQDIRTVFSSFGEILQLDFPIDPQTNKAKGFCFIEYRKKES 206
Query: 87 SNEAISSMNLFDLGGQYLRVGR 108
++ A+ SM F + G+ +++ R
Sbjct: 207 ADLAMISMQGFHIKGKPIKLAR 228
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKL-QQGSSPHRHKGYGFIEYETKQASNEAIS 92
R+ + +I +L D++ +FE FG I C L + P G+I+++ + S
Sbjct: 302 RVVLENIPFELKATDVRRIFEPFGEIMECVLYSREMLPGAFYAIGYIDFKNANVAQTVCS 361
Query: 93 SMNLFDLGGQYLRVGRA 109
+MN F++ G ++V A
Sbjct: 362 TMNGFEIAGSKVQVTMA 378
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + +YV ++H D+ E+ ++ +F FG ++ K+ + S+ + +G+GF+ +E
Sbjct: 245 ELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSN-GQSRGFGFVNFEK 303
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ GQ L VGRA
Sbjct: 304 HEEAQKAVDHMNGKEVRGQLLYVGRA 329
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + +F G I ++ + + R GY +I ++ + A+ +M
Sbjct: 76 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 135
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 136 NFEMIKGQPIRIMWSHRDPGLRKSGMG 162
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAK--LYNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + QS + E+ K NR +YV ++ + +E +K VF A+G I
Sbjct: 326 VGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITS 385
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ SS KG+GF+ + + + + +A++ MN +G + L V A
Sbjct: 386 AKVMTESS--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 431
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I K+ + H +G+GF+ +ET +A+ +AI++M
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVV--YNEHGSRGFGFVHFETHEAAQKAINTM 221
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 222 NGMLLNDRKVFVG 234
>gi|313232466|emb|CBY24134.1| unnamed protein product [Oikopleura dioica]
Length = 219
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
++VGRP+ I+E ++K IYVA I PD+ + DI+ +F FG IK +L +
Sbjct: 143 IKVGRPTQAQPYLKTIEEAVYDSKRSTCIYVAGIQPDMDDTDIRGLFSPFGEIKKMQLTK 202
Query: 67 GSSPHRHKGYGFIEY 81
+ +KG FIEY
Sbjct: 203 DDVSNVNKGNAFIEY 217
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L +++++ SI +++E ++ F FG I L +HKG+ FI +E +A+ A
Sbjct: 70 LMSQVFIGSIFYEVSEVQLRDAFSPFGIINVVNLNLDPVTGKHKGFAFIWFELAEAAQLA 129
Query: 91 ISSMNLFDLGGQYLRVGR 108
I MN ++ G+ ++VGR
Sbjct: 130 IEQMNGANMWGRPIKVGR 147
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSS 119
N + G+ +R+ + P +LH S
Sbjct: 73 NFDVIKGKPVRIMWSQRDP-SLHKS 96
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 137 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 195
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 196 HEDAQKAVDEMNGKELNGKQIYVGRA 221
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 110
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 111 EKMNGMLLNDRKVSVGR 127
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTGM 308
Query: 95 N 95
N
Sbjct: 309 N 309
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 150 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 208
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 209 HEDAQKAVDEMNGKELNGKQIYVGRA 234
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 321
Query: 95 N 95
N
Sbjct: 322 N 322
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 118 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 176
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 177 HEDAQKAVDEMNGKELNGKQIYVGRA 202
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 91
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 92 EKMNGMLLNDRKVFVGR 108
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 289
Query: 95 N 95
N
Sbjct: 290 N 290
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|348670466|gb|EGZ10288.1| hypothetical protein PHYSODRAFT_361940 [Phytophthora sojae]
Length = 409
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV ++ +LT+ D+++ F FGPI+ C ++ KGY F+ YE + + A+
Sbjct: 22 KLYVGNLFYELTQRDVEAEFGKFGPIEQCAVK--------KGYAFVHYEQLEDAELAVQE 73
Query: 94 MNLFDLGGQYLRVGRAIT 111
MN +LGG+ LRV A++
Sbjct: 74 MNDKELGGRRLRVAFAVS 91
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 228 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 286
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 287 HEDAQKAVDEMNGKELNGKQIYVGRA 312
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 147 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 201
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 202 EKMNGMLLNDRKVFVGR 218
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 84
Query: 92 SSMN 95
MN
Sbjct: 85 EKMN 88
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 306 QIYVGRAQKKVERQTELKRKFEQMK-QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG 364
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 365 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 400
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSS 119
N + G+ +R+ + P +LH S
Sbjct: 73 NFDVIKGKPVRIMWSQRDP-SLHKS 96
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 KKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|452852794|ref|YP_007494478.1| putative RNA-binding protein rbpA [Desulfovibrio piezophilus]
gi|451896448|emb|CCH49327.1| putative RNA-binding protein rbpA [Desulfovibrio piezophilus]
Length = 86
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV +I +E+D++ +F A G + KL R +G+GF+E + +QA + AI ++
Sbjct: 4 IYVGNIPFSASEDDVRDLFAAHGDVNSVKLVDDRETGRFRGFGFVEMDDRQALS-AIEAL 62
Query: 95 NLFDLGGQYLRVGRA 109
+ FD+GG+ L+V A
Sbjct: 63 DGFDMGGRTLKVNEA 77
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 56 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 114
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 115 HEDAQKAVDEMNGKELNGKQIYVGRA 140
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 74 KGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108
KGYGF+ +ET++A+ AI MN L + + VGR
Sbjct: 12 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 46
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 170 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 227
Query: 95 N 95
N
Sbjct: 228 N 228
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR + + V+D + +N +YV ++ + +E ++ +FE +G I K+
Sbjct: 167 VFVGRFMSRRERLEVLDL---GMRKFNNVYVKNLSEETDDEKLREIFELYGKIISAKVMI 223
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
S + K +GF+ +E +A+ +A+ ++N D G+ L VGRA T
Sbjct: 224 DDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQT 268
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ + + + + F AFG I CK+ H +GYGF+ +ET +A+ AI +
Sbjct: 100 VFIKKLDKSIDNKALYDTFSAFGNISSCKIV--CDEHGSRGYGFVHFETDEAARIAIEKV 157
Query: 95 NLFDLGGQYLRVGRAITPPNALH 117
N L G+ + VGR ++ L
Sbjct: 158 NGMLLNGKKVFVGRFMSRRERLE 180
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE+ + F GP+ ++ + R GY ++ + + A+ +M
Sbjct: 12 LYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDTM 71
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ P+ S G
Sbjct: 72 NFDIIKGRPIRITWYQRDPSLRKSGVG 98
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 186 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 244
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 245 HEDAQKAVDEMNGKELNGKQIYVGRA 270
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 105 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 159
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 160 EKMNGMLLNDRKVFVGR 176
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ Y+ + A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 300 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 357
Query: 95 N 95
N
Sbjct: 358 N 358
>gi|170588491|ref|XP_001899007.1| RNA binding protein, identical [Brugia malayi]
gi|170588493|ref|XP_001899008.1| RNA binding protein, identical [Brugia malayi]
gi|1813684|gb|AAC47624.1| putative RNA binding protein [Brugia malayi]
gi|158593220|gb|EDP31815.1| RNA binding protein, identical [Brugia malayi]
gi|158593221|gb|EDP31816.1| RNA binding protein, identical [Brugia malayi]
gi|208429687|gb|ACI26725.1| putative RNA binding protein [Wuchereria bancrofti]
gi|402582983|gb|EJW76928.1| RNA-binding protein [Wuchereria bancrofti]
Length = 82
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V ++ EED+ + F GP+ ++ R +G+GF E+ET+ A+ +A+ SM
Sbjct: 5 VFVGNLPYSAREEDVANFFWQVGPVTSVRIVLDRDTGRPRGFGFCEFETEAAAEQAVGSM 64
Query: 95 NLFDLGGQYLRVGRAIT 111
N + G+ LRV RAI+
Sbjct: 65 NHAEFMGRQLRVDRAIS 81
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|31201653|ref|XP_309774.1| AGAP010918-PA [Anopheles gambiae str. PEST]
gi|21293399|gb|EAA05544.1| AGAP010918-PA [Anopheles gambiae str. PEST]
Length = 393
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I + TEE +K +F GP+ KL + KGYGF EY+ ++ + A+ ++
Sbjct: 16 VFVGNIPYEATEEKLKDIFCEVGPVLSLKLVFDRESGKPKGYGFCEYKDQETALSAMRNL 75
Query: 95 NLFDLGGQYLRVGRAIT 111
N ++ GG+ LRV A T
Sbjct: 76 NGYEFGGRALRVDNACT 92
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 118 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 176
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 177 HEDAQKAVDEMNGKELNGKQIYVGRA 202
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 91
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 92 EKMNGMLLNDRKVFVGR 108
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 289
Query: 95 N 95
N
Sbjct: 290 N 290
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D+TE+ +K +FE +G I K+ + +G+GF+ +E
Sbjct: 226 ELGEKAKLFTNVYVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDD-GKSRGFGFVAFED 284
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
A+ +A+ +N ++ G+ + VGRA
Sbjct: 285 PDAAEQAVLELNGKEIAEGKCMYVGRA 311
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ ++ + + F AFG I CK+ Q S KGYGF+ +ET++A+N++I +
Sbjct: 144 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDES-GASKGYGFVHFETEEAANKSIDKV 202
Query: 95 NLFDLGGQYLRVGRAI 110
N L G+ + VG+ I
Sbjct: 203 NGMLLNGKKVYVGKFI 218
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKL--YNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q + E+ K+ NR +YV ++ + +E ++ F FG I
Sbjct: 308 VGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITS 367
Query: 62 CK--LQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K +++G R KG+GF+ + + + +A++ MN +G + L V A
Sbjct: 368 AKVMMEEG----RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALA 413
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 202 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 260
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 261 HEDAQKAVDEMNGKELNGKQIYVGRA 286
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 175
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 176 EKMNGMLLNDRKVFVGR 192
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 280 QIYVGRAQKKVERQTELKRKFEQMK-QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG 338
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 339 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 374
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|170574206|ref|XP_001892710.1| cleavage stimulation factor [Brugia malayi]
gi|158601568|gb|EDP38456.1| cleavage stimulation factor, putative [Brugia malayi]
Length = 334
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I ++ EE +K VF G + + +L + KGYGF EY Q + AI ++
Sbjct: 28 VFVGNISYEVGEEQLKQVFSQVGAVVHLRLVHDRDTGKPKGYGFCEYNDSQTAESAIRNL 87
Query: 95 NLFDLGGQYLRVGRA 109
N F+L G+ LRV A
Sbjct: 88 NGFELNGRPLRVDSA 102
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|353231613|emb|CCD78031.1| rna-binding protein musashi-related [Schistosoma mansoni]
Length = 438
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++++ + T +++K+ F FG ++ C+L + RH+G+GF+ +E++QA+ E + +
Sbjct: 122 KVFIGGVSTGTTADELKTFFSEFGKVETCELMMDKATSRHRGFGFVTFESEQAA-EKVCT 180
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGP 122
++ +L G+ + RA+ P + SS P
Sbjct: 181 IHYHELNGKMVEAKRAL--PKEVLSSTLP 207
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 202 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 260
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 261 HEDAQKAVDEMNGKELNGKQIYVGRA 286
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 175
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 176 EKMNGMLLNDRKVFVGR 192
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 316 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 373
Query: 95 N 95
N
Sbjct: 374 N 374
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F+ +G K+ + + +G+GFI YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPT-GKSRGFGFISYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN +L G+ + VGRA
Sbjct: 241 HEDANKAVEDMNGTELNGKTVFVGRA 266
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GP+ ++ + R GY ++ + + A+ +M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVG 99
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L++G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 218 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 276
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 277 HEDAQKAVDEMNGKELNGKQIYVGRA 302
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 137 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 191
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 192 EKMNGMLLNDRKVFVGR 208
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 332 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 389
Query: 95 N 95
N
Sbjct: 390 N 390
>gi|146328793|ref|YP_001209360.1| RNA recognition motif-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232263|gb|ABQ13241.1| RNA recognition motif protein [Dichelobacter nodosus VCS1703A]
Length = 95
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ TE+++++ F FG ++ + + R KG+GF+E +A+ +AI S+
Sbjct: 4 IYVGNLSYRTTEDELRNAFSQFGDVQNASIIKDRDSGRSKGFGFVEMPDAEAAKKAIESL 63
Query: 95 NLFDLGGQYLRVGRA 109
N DLGG+ L++ A
Sbjct: 64 NDKDLGGRNLKINEA 78
>gi|126660168|ref|ZP_01731286.1| RNA binding protein [Cyanothece sp. CCY0110]
gi|126618533|gb|EAZ89284.1| RNA binding protein [Cyanothece sp. CCY0110]
Length = 98
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ D+T ED+ VF +G +K L R +G+GF+E E+ AI ++
Sbjct: 3 IYVGNLVYDVTSEDLTEVFSEYGTVKRVSLPTDRETGRPRGFGFVEMESDDEETAAIETL 62
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
+ D G+ +RV +A N+ S G
Sbjct: 63 DGADWMGRQMRVNKAKPRENSGRSGSG 89
>gi|430812117|emb|CCJ30453.1| unnamed protein product [Pneumocystis jirovecii]
Length = 258
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I D++EE +K +F GPI +L ++ KGYGF EY ++ A+ ++
Sbjct: 10 VFVGNIPYDVSEEQLKDIFRQIGPINRFRLVFDKETNKPKGYGFCEYPDVATASAAVRNL 69
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
N D+ G+ LRV A + P ++ + S H
Sbjct: 70 NNHDINGRQLRVDFAESDPAQDNNRRQQQSSVQH 103
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 23 DEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYE 82
D + + K + ++V + +L +E ++ +FE +G I K+ Q R+KG+GF+ +E
Sbjct: 181 DAMGGQQKKFTNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFE 240
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
+ A +N+ D+ G+ L VGRA
Sbjct: 241 DPIDAENACDDLNMKDINGRILYVGRA 267
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGYGF+ + T++A+N++I
Sbjct: 101 VFIKNLDKSIDNKAMYDTFSAFGDILSCKVVCDENGS-----KGYGFVHFATEEAANKSI 155
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L G+ + VG+ ++
Sbjct: 156 EKVNGMLLNGKKVYVGKFMS 175
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F + GPI ++ + R GY ++ ++ + A+ SM
Sbjct: 13 LYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGRPIRIMWSQRDPSLRKSGVG 99
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 27 EEAKLYN--RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
E A Y +YV ++ L +E ++ F FG I K+ S R KG+GF+ + +
Sbjct: 287 ERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVM--SEGGRSKGFGFVCFSSP 344
Query: 85 QASNEAISSMN 95
+ + +A++ MN
Sbjct: 345 EEATKAVTEMN 355
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 73 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 131
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 132 HEDAQKAVDEMNGKELNGKQIYVGRA 157
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 51 SVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107
F AFG I CK+ + GS KGYGF+ +ET++A+ AI MN L + + VG
Sbjct: 8 DTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 62
Query: 108 R 108
R
Sbjct: 63 R 63
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 187 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 244
Query: 95 N 95
N
Sbjct: 245 N 245
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ Y+ + S A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|256073766|ref|XP_002573199.1| rna-binding protein musashi-related [Schistosoma mansoni]
Length = 431
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++++ + T +++K+ F FG ++ C+L + RH+G+GF+ +E++QA+ E + +
Sbjct: 122 KVFIGGVSTGTTADELKTFFSEFGKVETCELMMDKATSRHRGFGFVTFESEQAA-EKVCT 180
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGP 122
++ +L G+ + RA+ P + SS P
Sbjct: 181 IHYHELNGKMVEAKRAL--PKEVLSSTLP 207
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKRVERQTELKRKFEQMK-QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + +Y+ + D+ +E ++ VF +G K+ SS + KG+GF+ +E+
Sbjct: 181 ELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSG-KSKGFGFVSFES 239
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+A+ A+ MN D+ GQ + VGRA
Sbjct: 240 HEAAKRAVEEMNGKDMNGQLVFVGRA 265
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPI 59
V VGR + Q+ + + E+ K ++YV ++ + +E ++ F +FG I
Sbjct: 260 VFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDDTVDDEQLRKEFSSFGSI 319
Query: 60 KYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
K+ + R G+G I + + + + +A++ MN LG + L + A P
Sbjct: 320 TRVKVMKEEGYSR--GFGLICFSSPEEAAKALTEMNGRVLGSKALSIALAQRP 370
>gi|297840491|ref|XP_002888127.1| hypothetical protein ARALYDRAFT_315285 [Arabidopsis lyrata subsp.
lyrata]
gi|297333968|gb|EFH64386.1| hypothetical protein ARALYDRAFT_315285 [Arabidopsis lyrata subsp.
lyrata]
Length = 286
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQAS 87
+ L +RI+V + D+TE ++S F+ +G I C++ G R +G+GFI + ++ +
Sbjct: 7 DRNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGKDTGRPRGFGFITFTDRRGA 66
Query: 88 NEAISSMNLFDLGGQYLRVGRA---ITPPNALHSSKGPAPST 126
+EAI M+ +LG + + V +A + + H KG S+
Sbjct: 67 DEAIKHMHGRELGDRVISVNKAEPKVGGDDVDHLQKGGGYSS 108
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +A + IYV ++ D+ E+ ++ +F AFG + K+ + +S H +G+GF+ +E
Sbjct: 182 ELGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGH-SRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ GQ L VGRA
Sbjct: 241 HEEAQKAVDHMNGKEVSGQQLYVGRA 266
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG 99
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+ +AI +M
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETNEAAQQAIGTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ +++E +++VF +G I K+ + KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDSISDEKLRTVFSPYGVITSAKVM--TEGDHSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 NLFDLGGQYLRVGRA 109
N +G + L V A
Sbjct: 354 NGCIVGTKPLYVALA 368
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 197 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 255
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 256 HEDAQKAVDEMNGKELNGKQIYVGRA 281
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 116 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 170
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 171 EKMNGMLLNDRKVFVGR 187
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 311 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 368
Query: 95 N 95
N
Sbjct: 369 N 369
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VG + + QS I+E+ + + +YV +I ++T+E+ + +FE FG + +Q+
Sbjct: 206 VYVGPHISRKERQSKIEEMKAQ---FTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQR 262
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
R KG+GF+ +E + + + + S++ F+L G+ L V RA
Sbjct: 263 DEE-GRSKGFGFVNFEKHEEAQKGVESLHDFELNGKKLFVTRA 304
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH-RHKGYGFIEYETKQASNEAISS 93
I++ ++ + + + F AFG + CK+ + H R KGYGF+ YET +A++ AI +
Sbjct: 138 IFIKNLDEGIDNKALHDTFAAFGNVLSCKV--ATDEHGRSKGYGFVHYETAEAADTAIKA 195
Query: 94 MNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 196 VNGMLLNDKKVYVGPHIS 213
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+Y+ ++ ++ +E ++ FE FG I K+ ++GSS KG+GF+ + + + +A+
Sbjct: 334 LYIKNLEDEVDDERLRQEFEPFGTITSAKVMRDEKGSS----KGFGFVCFSSPDEATKAV 389
Query: 92 SSMNLFDLGGQYLRVGRA 109
+ MN +G + L V A
Sbjct: 390 AEMNNKMIGTKPLYVSLA 407
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 38/87 (43%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F GP+ ++ + + R GY ++ Y A+ +
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ R+ + P + +G
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQG 136
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F +G K+ S + KG+GF+ +E
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPS-GKSKGFGFVSFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN D+ G+ + VGRA
Sbjct: 241 HEDANQAVEDMNGKDINGKMVFVGRA 266
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 38.9 bits (89), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L++G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F +GP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDS-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN D+ G+ + VGRA
Sbjct: 241 HEDAQKAVDDMNGKDMNGKAIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 DKMNGMLLNDRKVFVGR 172
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
>gi|402587151|gb|EJW81087.1| hypothetical protein WUBG_08006 [Wuchereria bancrofti]
Length = 334
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I ++ EE +K VF G + + +L + KGYGF EY Q + AI ++
Sbjct: 28 VFVGNISYEVGEEQLKQVFSQVGAVVHLRLVHDRDTGKPKGYGFCEYNDAQTAESAIRNL 87
Query: 95 NLFDLGGQYLRVGRA 109
N F+L G+ LRV A
Sbjct: 88 NGFELNGRPLRVDSA 102
>gi|261855638|ref|YP_003262921.1| RNP-1 like RNA-binding protein [Halothiobacillus neapolitanus c2]
gi|261836107|gb|ACX95874.1| RNP-1 like RNA-binding protein [Halothiobacillus neapolitanus c2]
Length = 98
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ + D++S FEAFG +K K+ Q + R KG+ F+E K A AI +
Sbjct: 4 IYVGNLSYQSGDADVRSAFEAFGEVKSAKVIQDMATGRSKGFAFVEMADKAAGMTAIEQL 63
Query: 95 NLFDLGGQYLRVGRA 109
+ DL G+ +RV A
Sbjct: 64 DNTDLNGRNIRVNEA 78
>gi|348688369|gb|EGZ28183.1| hypothetical protein PHYSODRAFT_470319 [Phytophthora sojae]
Length = 120
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + +TE+ + + F FGPIK ++ S R KG+GF+E+E + + AI +M
Sbjct: 10 LYVGGLDKQVTEQGLYTAFVPFGPIKGVQIPMDYSTQRSKGFGFVEFEDEADARAAIDNM 69
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
+ +L G+ LRV A L S+K
Sbjct: 70 DESELFGKTLRVSIAKPDRPKLGSNK 95
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H D+ E+ ++ +F FG + K+ + S H +G+GF+ ++
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGH-SRGFGFVNFQK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ G+ L VGRA
Sbjct: 241 HEEAQKAVMDMNGKEVSGRLLYVGRA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG 99
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+ +AI++M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVV--CDDHGSRGFGFVHFETHEAAQQAITTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|409040470|gb|EKM49957.1| hypothetical protein PHACADRAFT_264412 [Phanerochaete carnosa
HHB-10118-sp]
Length = 575
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL--QQGSSPHRHKGYGFIEYETKQASNEA 90
N+++V + P L EE + + +FG +K L + G+ P KG+ F EY ++ A
Sbjct: 331 NKVFVGGLPPYLNEEQVMELLTSFGDLKAFNLVRENGNGPS--KGFAFFEYVDPAVTDVA 388
Query: 91 ISSMNLFDLGGQYLRVGRAIT-------PPNALHSSKGPAP 124
I S+N +LG +YL V RA PP AL+ ++ P P
Sbjct: 389 IQSLNEMELGDKYLVVQRASVGAKNGQIPPQALYPTEIPKP 429
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR + + ++ E+ AK + +Y+ + D+ +E +K +F +G K+
Sbjct: 65 VFVGRFKSRKEREA---ELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKVMT 121
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S+ + KG+GF+ +E + +N+A+ MN D+ G+ + VGRA
Sbjct: 122 DSTG-KSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRA 163
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 51 SVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107
F AFG I CK+ + GS KGY F+ +ET+ A++ AI MN L + + VG
Sbjct: 14 DTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVG 68
Query: 108 R 108
R
Sbjct: 69 R 69
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQS-GKSKGFGFVSFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG + CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENGS-----KGYGFVHFETREAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGIPLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS-SPHRHKGYGFIEYETKQASNEAISS 93
+YV +HPD+TE + F GPI ++ + +PH Y ++ ++ + + A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPH-SSNYAYVNFQHPKDAEHALDT 71
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKG 121
MN + G+ LR+ + P+ S G
Sbjct: 72 MNFDVIKGKPLRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDAIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 157 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 215
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 216 HEDAQKAVDEMNGKELNGKQIYVGRA 241
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 76 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 130
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 131 EKMNGMLLNDRKVFVGR 147
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 235 QIYVGRAQKKVERQTELKRKFEQMK-QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG 293
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 294 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 329
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E++K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEINGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQS-GKSKGFGFVSFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R Y ++ ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ LR+ + P+ S G
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGVG 99
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG + CK+ + GS KGYGF+ + T++A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENGS-----KGYGFVHFGTREAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + VGR
Sbjct: 156 EKMNGIPLNDCKVFVGR 172
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDAIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E++K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEINGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E++K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEINGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E++K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEINGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|159164100|pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 18 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 77
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
LGG+ +R A P PAPS
Sbjct: 78 GGQWLGGRQIRTNWATRKP--------PAPS 100
>gi|124810295|ref|XP_001348830.1| U2 snRNP auxiliary factor, putative [Plasmodium falciparum 3D7]
gi|23497731|gb|AAN37269.1|AE014827_12 U2 snRNP auxiliary factor, putative [Plasmodium falciparum 3D7]
Length = 833
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 11 RPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSP 70
RPS ++ DE NR+Y+ ++ DL +E IK + E FG +K + + +
Sbjct: 574 RPSKPVNVKTSSDE-------ENRLYIQNLPHDLKDEQIKDLLEQFGDLKAFNIIKDLNT 626
Query: 71 HRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+KGYGF EYE + AI ++N F G L V +A
Sbjct: 627 GLNKGYGFFEYEDSSCTQLAIHALNGFVCGQNILNVKKA 665
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E++K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|374812572|ref|ZP_09716309.1| RNA-binding protein [Treponema primitia ZAS-1]
Length = 90
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV ++ + E++++S+F AFG ++ K+ KG+GF+E T + AIS
Sbjct: 4 KLYVGNLSYNTHEDNLRSLFSAFGTVESVKIITDRDTGNSKGFGFVEMSTDAEAQAAISG 63
Query: 94 MNLFDLGGQYLRVGRAITPP 113
N DL G+ ++V A+ P
Sbjct: 64 TNSTDLDGRAIKVNEAMDKP 83
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E++K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|325970873|ref|YP_004247064.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
gi|324026111|gb|ADY12870.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
Length = 90
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+IYV ++ + +EE+++ +F +G + + R KG+GF+E E A+ AIS
Sbjct: 4 KIYVGNMSYNTSEEELRDLFAQYGTVLSANIIIDRETRRPKGFGFVEMEDDSAAIAAISQ 63
Query: 94 MNLFDLGGQYLRVGRAITPP 113
++ D GG+ LRV AI P
Sbjct: 64 LDGQDFGGRNLRVNEAIAKP 83
>gi|18406831|ref|NP_564759.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|30696446|ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|2462758|gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|21593771|gb|AAM65738.1| RNA binding protein, putative [Arabidopsis thaliana]
gi|26983818|gb|AAN86161.1| putative glycine-rich RNA binding protein [Arabidopsis thaliana]
gi|62321068|dbj|BAD94150.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332195593|gb|AEE33714.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332195594|gb|AEE33715.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 292
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQAS 87
+ L +RI+V + D+TE ++S F+ +G I C++ G R +G+GFI + ++ +
Sbjct: 7 DGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Query: 88 NEAISSMNLFDLGGQYLRVGRA 109
++AI M+ +LG + + V +A
Sbjct: 67 DDAIKHMHGRELGNKVISVNKA 88
>gi|409993905|ref|ZP_11277031.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
gi|291569285|dbj|BAI91557.1| RNA-binding protein [Arthrospira platensis NIES-39]
gi|409935253|gb|EKN76791.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
Length = 103
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ ++TE+D+ +VF +G +K KL R +G+GF+E +T+ AI ++
Sbjct: 3 IYVGNLSYEVTEDDLTAVFAEYGSVKRVKLPTDRETGRMRGFGFVEMDTEAEEQSAIDAL 62
Query: 95 NLFDLGGQYLRVGRA 109
+ + G+ LRV +A
Sbjct: 63 DGAEWCGRDLRVNKA 77
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F+ +G K+ + + +G+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPT-GKSRGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN +L G+ + VGRA
Sbjct: 241 HEDANKAVEDMNGTELNGKTVFVGRA 266
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GP+ ++ + R GY ++ + + A+ +M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVG 99
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L++G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|119620231|gb|EAW99825.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_c [Homo sapiens]
Length = 144
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 32 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 91
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 92 GGQWLGGRQIRTNWATRKP--------PAPKSTY 117
>gi|159164088|pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
gi|211938969|pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 18 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 78 GGQWLGGRQIRTNWATRKP--------PAPKSTY 103
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMK-QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F+ +G K+ + + +G+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPT-GKSRGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN +L G+ + VGRA
Sbjct: 241 HEDANKAVEDMNGTELNGKTVFVGRA 266
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GP+ ++ + R GY ++ + + A+ +M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVG 99
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L++G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|436841131|ref|YP_007325509.1| putative RNA-binding protein rbpE [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432170037|emb|CCO23408.1| putative RNA-binding protein rbpE [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 87
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ TEED+++ FEAFG + KL + R +G+GF+E + A ++AI ++
Sbjct: 5 LYVGNLPWSATEEDVRAAFEAFGEVTSVKLIEDRETGRPRGFGFVEMDDNGA-HDAIEAL 63
Query: 95 NLFDLGGQYLRVGRA 109
+ D GG+ L+V A
Sbjct: 64 DGKDFGGRNLKVNEA 78
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDARKAVDEMNGKELNGKQIYVGRA 266
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I CK+ + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGTLLNDRKVFVGR 172
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R Y ++ ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVG 99
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+ +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|33150650|gb|AAP97203.1|AF087905_1 splicing factor SF2 [Homo sapiens]
Length = 425
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A +
Sbjct: 248 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRACGT 307
Query: 94 MNL-FDLGGQYLRVG 107
+ L G+ +RVG
Sbjct: 308 VEWGLSLLGRPMRVG 322
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASN 88
+ +YV +I D+TE+D + +FE +G + L Q+G S +G+GF+ + T +++
Sbjct: 239 FTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKS----RGFGFVNFTTHESAF 294
Query: 89 EAISSMNLFDLGGQYLRVGRA 109
+A+ +N D GQ L VGRA
Sbjct: 295 KAVDELNNKDFHGQDLYVGRA 315
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+++AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDET-GASKGYGFVHYETDEAASQAIKHV 207
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 208 NGMLLNEKKVYVGHHI 223
>gi|387017380|gb|AFJ50808.1| Nucleolysin TIAR [Crotalus adamanteus]
Length = 388
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQ 200
>gi|387017378|gb|AFJ50807.1| Nucleolysin TIA-1 isoform p40 [Crotalus adamanteus]
Length = 392
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVA 136
LGG+ +R A P PAP +++ A ++
Sbjct: 168 GGQWLGGRQIRTNWATRKP--------PAPKSTYESNAKQLS 201
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|449506038|ref|XP_002188262.2| PREDICTED: nucleolysin TIAR [Taeniopygia guttata]
Length = 453
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 180 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 239
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 240 GGQWLGGRQIRTNWATRKPPAPKSTQ 265
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 92 CYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 149
Query: 95 NLFDLGGQYLRVGRAITP 112
N + G+ ++V A TP
Sbjct: 150 NGRKILGKEVKVNWATTP 167
>gi|193212689|ref|YP_001998642.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193086166|gb|ACF11442.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 88
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IY+ ++ ++TE D++ F FG + + R KG+GF+E + +NEAISS+
Sbjct: 3 IYIGNLDYEITETDLRDAFSEFGDVAKASVIMDKFSGRSKGFGFVEMTNDEEANEAISSL 62
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
N LG + ++V A P SS+
Sbjct: 63 NESKLGSRNIKVNEA-KPREERSSSR 87
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELSGKQIYVGRA 266
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I CK+ + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R Y ++ ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+ +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|297301957|ref|XP_001098541.2| PREDICTED: nucleolysin TIAR isoform 5 [Macaca mulatta]
Length = 506
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 230 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 289
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 290 GGQWLGGRQIRTNWATRKPPAPKSTQ 315
>gi|281346697|gb|EFB22281.1| hypothetical protein PANDA_002889 [Ailuropoda melanoleuca]
Length = 377
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 90 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 149
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 150 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 184
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAIS 92
YV ++ D+TE I +F GP K CK+ G+ P Y F+E+ + + A++
Sbjct: 1 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEHRHAAAALA 55
Query: 93 SMNLFDLGGQYLRVGRAITP 112
+MN + G+ ++V A TP
Sbjct: 56 AMNGRKIMGKEVKVNWATTP 75
>gi|16198525|gb|AAH15944.1| TIA1 protein [Homo sapiens]
gi|119620232|gb|EAW99826.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_d [Homo sapiens]
gi|119620233|gb|EAW99827.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_d [Homo sapiens]
Length = 214
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELSGKQIYVGRA 266
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I CK+ + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R Y ++ ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMK-QDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELSGKQIYVGRA 266
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I CK+ + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R Y ++ ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+ +E ++ F FG I K+ R +G+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGG--RSRGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|344306484|ref|XP_003421917.1| PREDICTED: nucleolysin TIAR-like [Loxodonta africana]
Length = 504
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 228 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 287
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 288 GGQWLGGRQIRTNWATRKPPAPKSTQ 313
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 140 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 197
Query: 95 NLFDLGGQYLRVGRAITP 112
N + G+ ++V A TP
Sbjct: 198 NGRKILGKEVKVNWATTP 215
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMK-QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|358340633|dbj|GAA48482.1| RNA-binding protein Musashi, partial [Clonorchis sinensis]
Length = 154
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++++ + T E++++ F FG ++ C+L S +RH+G+GF+ +E++ A+ E + +
Sbjct: 68 KVFIGGVATGTTAEELETFFSEFGKVETCELMMDKSTNRHRGFGFVTFESEVAA-EKVCN 126
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSS 119
++ +L G+ + +A+ P L SS
Sbjct: 127 IHYHELNGKMVEAKKAL-PKEVLSSS 151
>gi|71029064|ref|XP_764175.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351129|gb|EAN31892.1| hypothetical protein TP04_0540 [Theileria parva]
Length = 486
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQA 86
EE + +IY+ + P T EDI+ +F +FG I L ++ KG+ F+EY K++
Sbjct: 155 EEPQKSYKIYIGQLDPSCTIEDIRVIFSSFGDILNIDLPTEPDTNKVKGFCFVEYRKKES 214
Query: 87 SNEAISSMNLFDLGGQYLRVGR 108
++ A++SM F + G+ +++ R
Sbjct: 215 ADLALNSMQGFHIKGKPIKLAR 236
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKL-QQGSSPHRHKGYGFIEYETKQASNEAIS 92
R+ + ++ +L DI+ +FE FG I C L + P G+I++ + + S
Sbjct: 309 RVVLENVPFELAASDIRRIFEPFGNITECVLYSREMLPGAFFALGYIDFVSANVAQTVCS 368
Query: 93 SMNLFDLGGQYLRVGRA 109
+MN F++ G ++V A
Sbjct: 369 TMNGFEIAGSKIQVTLA 385
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
EE K + IY+ +I P++ +E+ + +FE FG I L + S + +G+GF+ + T +
Sbjct: 216 EEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHE 274
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
++ A+ MN ++ Q L VGRA
Sbjct: 275 SAQAAVEEMNDKEVRSQKLYVGRA 298
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G S KGYGF+ YET +A+N AI
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVS----KGYGFVHYETAEAANNAI 187
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 188 KHVNGMLLNDKKVFVGHHIS 207
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 104 NYTLIKGKPCRI 115
>gi|348688506|gb|EGZ28320.1| hypothetical protein PHYSODRAFT_309221 [Phytophthora sojae]
Length = 694
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+I++ + L EE +K + +AFGP++ L + S + KGYGF EY ++ A
Sbjct: 472 KIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDINVTDAACLG 531
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAM 147
+N LG + L V RA++ NA K A + + T + + A +QAM
Sbjct: 532 LNDMRLGDKTLTVRRAMSQENA----KAVASAAGTVNTGLEMGLDPSRAAMQAM 581
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 150 ELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 208
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 209 HEDAQKAVDVMNGKELNGKQIYVGRA 234
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HP +TE + F GPI ++ + HR GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 321
Query: 95 N 95
N
Sbjct: 322 N 322
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIK--YCKLQQGSSPHRHKGYGFIEY 81
E+ E+AKL+ +YV + +L +E +K +FE +G I ++ G S +G+GF+ +
Sbjct: 174 ELGEKAKLFTNVYVKNFGDELNDETLKEMFEKYGTITSHRVMIKDGKS----RGFGFVAF 229
Query: 82 ETKQASNEAISSMNLFDLG-GQYLRVGRA 109
E +++ A+ +N +LG G+ L VGRA
Sbjct: 230 ENPESAEHAVQELNGKELGEGKILYVGRA 258
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ ++ + + F AFG I CK+ Q + KGYGF+ +ET++++N +I +
Sbjct: 92 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGN-SKGYGFVHFETEESANTSIEKV 150
Query: 95 NLFDLGGQYLRVGRAI 110
N L G+ + VGR I
Sbjct: 151 NGMLLNGKKVYVGRFI 166
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F + GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 64 NFDLIKGRPIRIMWSQRDPSLRKSGVG 90
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q + E+ K+ +YV ++ + +E ++ F FG I
Sbjct: 255 VGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITS 314
Query: 62 CK--LQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K L++G R KG+GF+ + + + +A++ MN +G + L V A
Sbjct: 315 AKVMLEEG----RSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALA 360
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASN 88
+ +Y+ +I D+TEE+ + +FE FG I L Q+G S +G+GF+ + T +++
Sbjct: 229 FTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKS----RGFGFVNFSTHESAQ 284
Query: 89 EAISSMNLFDLGGQYLRVGRA 109
A+ MN ++ Q L VGRA
Sbjct: 285 AAVDEMNEKEIRTQKLYVGRA 305
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 194
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 195 KHVNGMLLNDKKVFVGHHIS 214
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 111 NYTLIKGKPCRI 122
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++H D+ + I F AFG I C++ +QG+S +GYGF+ +ET++A+NEAI
Sbjct: 101 VFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNS----RGYGFVHFETEEAANEAI 156
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+ +N L + + VG+ +
Sbjct: 157 NKVNGMLLNEKKVFVGKFV 175
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQA 86
++A+L+ +YV + +L + +K +FE +G I ++ + + +G+GF+ +E
Sbjct: 186 DKARLFTNVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQT-GKSRGFGFVSFENPDN 244
Query: 87 SNEAISSMNLFDLG-GQYLRVGRA 109
+ +A+ +N +LG G+ + VGRA
Sbjct: 245 AEQAVKELNDKELGNGKKIYVGRA 268
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F +G I K+ S+ R KG+GF+ + + + + +A++ M
Sbjct: 298 LYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEM 357
Query: 95 N 95
N
Sbjct: 358 N 358
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + PD+TE + F GP+ ++ + R GY ++ + + A+ +M
Sbjct: 13 LYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N L + +R+ + P+ S G
Sbjct: 73 NFEPLKNRPMRIMWSQRDPSLRKSGVG 99
>gi|344283907|ref|XP_003413712.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Loxodonta
africana]
Length = 386
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +Y+ +I D+TEE+ + +FE FG I L Q+G S +G+GF+ +
Sbjct: 223 EEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKS----RGFGFVNFS 278
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T +++ A+ MN ++ Q L VGRA
Sbjct: 279 THESAQAAVDEMNEKEIRTQKLYVGRA 305
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 194
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 195 KHVNGMLLNDKKVFVGHHIS 214
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 111 NYTLIKGKPCRI 122
>gi|426335862|ref|XP_004029425.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Gorilla gorilla gorilla]
Length = 353
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 66 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 125
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 126 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 160
>gi|224100725|ref|XP_002311989.1| predicted protein [Populus trichocarpa]
gi|222851809|gb|EEE89356.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
NRI+V + D+TE +++ F+ FG I C++ R +G+GFI + ++A ++AI
Sbjct: 3 NRIFVGGLSWDITERQLENAFDRFGKIVECQVMLERDTGRPRGFGFITFADRRAMDDAIR 62
Query: 93 SMNLFDLGGQYLRVGRA 109
M+ D G + + V +A
Sbjct: 63 EMHGRDFGDRVISVNKA 79
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
V VG+ + +S +EI + IYV +I + +EED+K +F +G I L+
Sbjct: 209 EVFVGKHISKKDRESKFEEIKAN---FTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLE 265
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ + + KG+GF+ YE +A+ +A+ +N ++ GQ + VGRA
Sbjct: 266 K-DAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRA 308
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
EE K + IY+ +I P++ +E+ + +FE FG I L + S + +G+GF+ + T +
Sbjct: 216 EEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHE 274
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
++ A+ MN ++ Q L VGRA
Sbjct: 275 SAQAAVEEMNDKEVRSQKLYVGRA 298
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G S KGYGF+ YET +A+N AI
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVS----KGYGFVHYETAEAANNAI 187
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 188 KHVNGMLLNDKKVFVGHHIS 207
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 104 NYTLIKGKPCRI 115
>gi|380748929|ref|NP_001244132.1| nucleolysin TIAR isoform 2 [Gallus gallus]
gi|28883273|gb|AAO49720.1| TIA-1 [Gallus gallus]
Length = 372
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 157 GGQWLGGRQIRTNWATRKP--------PAPKSTY 182
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAASALAAMNGRKIMGKEVKVNWATTP 84
>gi|73969892|ref|XP_866571.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 9 [Canis lupus
familiaris]
gi|301758208|ref|XP_002914947.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1 [Ailuropoda
melanoleuca]
gi|410954995|ref|XP_003984144.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Felis catus]
gi|431912606|gb|ELK14624.1| Nucleolysin TIA-1 isoform p40 [Pteropus alecto]
Length = 386
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|432875366|ref|XP_004072806.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oryzias latipes]
Length = 386
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T ED+K+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTEDVKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQHM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP T++
Sbjct: 157 GGQWLGGRQIRTNWATRKP--------PAPKTTY 182
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+YV ++ D+TE I VF GP K CK+ G+ P Y F+E+ + + ++
Sbjct: 9 LYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVDTAGNDP-----YCFVEFYDHRHAAASL 63
Query: 92 SSMNLFDLGGQYLRVGRAITP 112
++MN + G+ ++V A TP
Sbjct: 64 AAMNGRKIMGKEVKVNWATTP 84
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+Y + LTE+ ++ F AFG I ++ KGY F+ + + +++ AI S+
Sbjct: 205 VYCGGVSSGLTEQLMRQTFSAFGQIMEVRV------FPDKGYSFVRFNSHESAAHAIVSV 258
Query: 95 NLFDLGGQYLRVGRAITPPNALHS 118
N + G ++ P+ ++S
Sbjct: 259 NGTSIDGHVVKCYWGKETPDMMNS 282
>gi|410298560|gb|JAA27880.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 388
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 101 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 160
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 161 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 195
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQAS 87
E ++ +YV ++ D+TE I +F GP K CK+ + Y F+E+ + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHA 61
Query: 88 NEAISSMNLFDLGGQYLRVGRAITP 112
A+++MN + G+ ++V A TP
Sbjct: 62 AAALAAMNGRKIMGKEVKVNWATTP 86
>gi|395731713|ref|XP_002811971.2| PREDICTED: LOW QUALITY PROTEIN: nucleolysin TIA-1 isoform p40
[Pongo abelii]
Length = 386
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMETAGNDP-----YCFVEFHDD 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKKMGKEVKVNWATTP 84
>gi|115497910|ref|NP_001069577.1| nucleolysin TIA-1 isoform p40 [Bos taurus]
gi|111308630|gb|AAI20428.1| TIA1 cytotoxic granule-associated RNA binding protein [Bos taurus]
gi|296482421|tpg|DAA24536.1| TPA: TIA1 cytotoxic granule-associated RNA binding protein [Bos
taurus]
Length = 384
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|344246646|gb|EGW02750.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 127
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
V VGR + + ++ E+ AK + IY+ + D+ +E +K +F FGP K+
Sbjct: 3 EVFVGRFKSRKEREA---ELGARAKDFTNIYIKNFGEDMDDERLKDLFGKFGPALNVKVM 59
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S + KG+GF+ +E + + +A+ MN +L G+ + VGRA
Sbjct: 60 TDESG-KSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRA 102
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
+I E + +Y ++ PD+T+E+ + +F +G I C LQ+ + KG+GF+ +E
Sbjct: 218 KIEESRANFTNVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDD-GKSKGFGFVNFED 276
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ A+ ++ D GQ L V RA
Sbjct: 277 HNEAQTAVDELHDSDFKGQKLFVARA 302
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+Y+ +I +E ++ F FG I CK+ + S +G+GF+ Y + +N+A+S M
Sbjct: 332 LYLKNIPESYDDERLREEFAPFGAITSCKIMRAPS-GVSRGFGFVCYSVPEEANKAVSEM 390
Query: 95 N 95
N
Sbjct: 391 N 391
>gi|156087831|ref|XP_001611322.1| RNA recognition motif domain containing protein [Babesia bovis]
gi|154798576|gb|EDO07754.1| RNA recognition motif domain containing protein [Babesia bovis]
Length = 98
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I V +HP+ EEDI+ FE FG I L KGY FIE+ +Q + AI+ M
Sbjct: 16 IIVTGVHPEAQEEDIRDAFEGFGQITSIHLNMDRRSGYAKGYAFIEFSEQQEARSAITEM 75
Query: 95 NLFDLGGQYLRVGRA 109
N + GQ + V A
Sbjct: 76 NGHQILGQEVAVAWA 90
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + +Y+ + D+ +E ++ VF +G K+
Sbjct: 167 VFVGRFKNRKDREA---ELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMT 223
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S + KG+GF+ ++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 224 DPSG-KSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRA 265
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E ++ F +FG I
Sbjct: 262 VGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISR 321
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106
K+ Q + KG+G I + + + + +A++ MN LG + L +
Sbjct: 322 VKVMQ--EEGQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNI 364
>gi|402891170|ref|XP_003908827.1| PREDICTED: nucleolysin TIA-1 isoform p40, partial [Papio anubis]
Length = 377
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 90 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 149
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 150 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 184
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAIS 92
YV ++ D+TE I +F GP K CK+ G+ P Y F+E+ + + A++
Sbjct: 1 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEHRHAAAALA 55
Query: 93 SMNLFDLGGQYLRVGRAITP 112
+MN + G+ ++V A TP
Sbjct: 56 AMNGRKIMGKEVKVNWATTP 75
>gi|84579137|dbj|BAE73002.1| hypothetical protein [Macaca fascicularis]
Length = 385
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F +G K+ + + KG+GF+ +E
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPT-GKSKGFGFVSFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN D+ G+ L VGRA
Sbjct: 241 HEEANKAVEEMNGKDINGKMLFVGRA 266
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|301117646|ref|XP_002906551.1| splicing factor U2af large subunit, putative [Phytophthora
infestans T30-4]
gi|262107900|gb|EEY65952.1| splicing factor U2af large subunit, putative [Phytophthora
infestans T30-4]
Length = 569
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+I++ + L EE +K + +AFGP++ L + S + KGYGF EY ++ A
Sbjct: 347 KIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDINVTDAACIG 406
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAM 147
+N LG + L V RA++ NA K A + + T + + A +QAM
Sbjct: 407 LNDMQLGDKTLTVRRAMSQENA----KAVASAAGTVNTGLEMGLDPSLAAMQAM 456
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I C + + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L G+ + VG+
Sbjct: 156 KKMNGMLLNGRKVFVGQ 172
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-----NYAYVNFQHTKDAEH 67
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKG 121
A+ +MN + G+ +R+ + P+ S G
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|387762942|ref|NP_001248687.1| TIA1 cytotoxic granule-associated RNA binding protein [Macaca
mulatta]
gi|84579193|dbj|BAE73030.1| hypothetical protein [Macaca fascicularis]
gi|355565763|gb|EHH22192.1| hypothetical protein EGK_05415 [Macaca mulatta]
gi|355751389|gb|EHH55644.1| hypothetical protein EGM_04890 [Macaca fascicularis]
gi|380816026|gb|AFE79887.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
gi|383421173|gb|AFH33800.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
gi|384949108|gb|AFI38159.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
Length = 386
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|6755783|ref|NP_035715.1| nucleolysin TIA-1 isoform 1 [Mus musculus]
gi|1729966|sp|P52912.1|TIA1_MOUSE RecName: Full=Nucleolysin TIA-1; AltName: Full=RNA-binding protein
TIA-1; AltName: Full=T-cell-restricted intracellular
antigen-1; Short=TIA-1
gi|437057|gb|AAA03711.1| TIA [Mus musculus]
gi|1616673|gb|AAC52871.1| RNA binding protein TIA-1 [Mus musculus]
gi|26353510|dbj|BAC40385.1| unnamed protein product [Mus musculus]
gi|74188216|dbj|BAE25782.1| unnamed protein product [Mus musculus]
gi|148666751|gb|EDK99167.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_a
[Mus musculus]
Length = 386
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|326936530|ref|XP_003214306.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Meleagris gallopavo]
Length = 423
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 139 TQASQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 198
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 199 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 233
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAIS 92
YV ++ D+TE I +F GP K CK+ G+ P Y F+E+ + + A++
Sbjct: 50 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEHRHAASALA 104
Query: 93 SMNLFDLGGQYLRVGRAITP 112
+MN + G+ ++V A TP
Sbjct: 105 AMNGRKIMGKEVKVNWATTP 124
>gi|390474361|ref|XP_003734771.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Callithrix jacchus]
gi|403260486|ref|XP_003922702.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 386
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|16215602|emb|CAC95017.1| TIAR protein [Xenopus laevis]
Length = 389
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATSKSKGYGFVSFYNKLDAENAIVHM 174
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQ 200
>gi|224128992|ref|XP_002328863.1| predicted protein [Populus trichocarpa]
gi|118482403|gb|ABK93124.1| unknown [Populus trichocarpa]
gi|222839293|gb|EEE77630.1| predicted protein [Populus trichocarpa]
Length = 131
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++++ + ++ +K F FG + ++ R +G+GF+ YE+ ++++EA+S+
Sbjct: 37 KLFIGGLAWSTDDQSLKDAFSGFGEVTEARVITDRDTGRSRGFGFVSYESTESASEALSA 96
Query: 94 MNLFDLGGQYLRVGRAITP--PNALHSSKGPAP 124
M+ +LGG+ +RVG A P +S+ G P
Sbjct: 97 MDGQELGGRNIRVGYATDKRQPQPYNSNYGGNP 129
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I C + + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L G+ + VG+
Sbjct: 156 KKMNGMLLNGRKVFVGQ 172
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-----NYAYVNFQHTKDAEH 67
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKG 121
A+ +MN + G+ +R+ + P+ S G
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|395501989|ref|XP_003755369.1| PREDICTED: nucleolysin TIAR [Sarcophilus harrisii]
Length = 392
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 119 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 178
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 179 GGQWLGGRQIRTNWATRKPPAPKSTQ 204
>gi|391332510|ref|XP_003740677.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 341
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I+V + D+ + ++ F FG I C++ + + KGYGF+ + KQ + AI++M
Sbjct: 50 IFVGDLSSDVETQQLREAFTPFGEISDCRVVRDPQTQKSKGYGFVSFLRKQDAETAINAM 109
Query: 95 NLFDLGGQYLRVGRAITPP--NALHSSKG 121
N LGG+ +R A P NA + +G
Sbjct: 110 NGQWLGGRVIRTNWATRRPASNANNQQEG 138
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 21 VIDEITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFI 79
DE+ +A N +Y + L+EE I+ F ++G I+ ++ + KGY F+
Sbjct: 151 TFDEVYNQASPTNCTVYCGGLGQGLSEELIQKTFSSYGIIQEIRV------FKDKGYAFV 204
Query: 80 EYETKQASNEAISSMNLFDLGGQYLRV--GRAITPPN 114
+ TK+++ AI +++ D+ GQ ++ G+ + PN
Sbjct: 205 RFATKESATHAIVAVHNTDVNGQIVKCSWGKESSDPN 241
>gi|313226301|emb|CBY21445.1| unnamed protein product [Oikopleura dioica]
Length = 471
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 6/152 (3%)
Query: 23 DEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYE 82
D I ++ + I+V + +LT D+++ FE FG I ++ + + +R KGYGF+ +
Sbjct: 126 DGIKKDTSKDHHIFVGDLAQELTTLDLQNEFEKFGKISEARVVRDAQTNRSKGYGFVAFL 185
Query: 83 TKQASNEAISSMNLFDLGGQYLRVG----RAITPPNALHSSKGPAPSTSHMPTAAAVAAA 138
K+++ AI+ MN + G+ +R R + PP + K A ++S T V
Sbjct: 186 KKESAEMAITEMNNKSICGREVRTNWATSRKLPPPTVIDPHK-VAQASSFSNTTVYVGGI 244
Query: 139 AATAKIQAMDGGATNAVGVLSKLSQVFFFFAF 170
Q + + + GV+ ++ + F F F
Sbjct: 245 TKDVHTQQVLQASFSRFGVVEEV-RTFETFGF 275
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 22 IDEITEEAKLYNR-IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG---SSPHRHKGYG 77
+ E ++ +++ R +YV ++H + TE +K++F G + K+ S+ H Y
Sbjct: 35 LSEQAKDDEIFKRTLYVGNLHKNATENVLKALFAVIGNVVDIKMINDAALSTSH----YC 90
Query: 78 FIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
FI YET + A+++MN D+ L+V A P
Sbjct: 91 FITYETHVGAQRALAAMNGRDVYKMPLKVNWATRP 125
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E++K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEITGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|345324102|ref|XP_001514793.2| PREDICTED: nucleolysin TIAR-like [Ornithorhynchus anatinus]
Length = 452
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 179 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 238
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 239 GGQWLGGRQIRTNWATRKPPAPKSTQ 264
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IY+ +I P++ +E+ + +FE FG I L + S + +G+GF+ + T +++ A+
Sbjct: 222 FTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAV 280
Query: 92 SSMNLFDLGGQYLRVGRA 109
MN ++ Q L VGRA
Sbjct: 281 EEMNDKEVRSQKLYVGRA 298
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G S KGYGF+ YET +A+N AI
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVS----KGYGFVHYETAEAANNAI 187
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 188 KHVNGMLLNDKKVFVGHHIS 207
>gi|188219591|ref|NP_071505.2| nucleolysin TIA-1 isoform p40 isoform 2 [Homo sapiens]
gi|114577930|ref|XP_001141557.1| PREDICTED: uncharacterized protein LOC459303 isoform 2 [Pan
troglodytes]
gi|397521824|ref|XP_003830986.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Pan paniscus]
gi|206729905|sp|P31483.3|TIA1_HUMAN RecName: Full=Nucleolysin TIA-1 isoform p40; AltName:
Full=RNA-binding protein TIA-1; AltName:
Full=T-cell-restricted intracellular antigen-1;
Short=TIA-1; AltName: Full=p40-TIA-1
gi|62702267|gb|AAX93193.1| unknown [Homo sapiens]
gi|119620230|gb|EAW99824.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_b [Homo sapiens]
gi|261861076|dbj|BAI47060.1| TIA1 cytotoxic granule-associated RNA binding protein [synthetic
construct]
gi|410226260|gb|JAA10349.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410254978|gb|JAA15456.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410298556|gb|JAA27878.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410353839|gb|JAA43523.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 386
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I C + + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L G+ + VG+
Sbjct: 156 EKMNGMLLNGRKVFVGQ 172
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + +GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSS-----NYAYVNFQHPKDAEH 67
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKG 121
A+ +MN + G+ LR+ + P+ S G
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMG 99
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ D+ +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I C + + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L G+ + VG+
Sbjct: 156 EKMNGMLLNGRKVFVGQ 172
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + +GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSS-----NYAYVNFQHPKDAEH 67
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKG 121
A+ +MN + G+ LR+ + P+ S G
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMG 99
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ D+ +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|149036617|gb|EDL91235.1| rCG56007, isoform CRA_a [Rattus norvegicus]
Length = 386
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I CK+ + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VG+
Sbjct: 156 EKMNGMLLNDRKVFVGQ 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + +GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSS-----NYAYVNFQHPKDAEH 67
Query: 90 AISSMNLFDLGGQYLRV 106
A+ +MN + G+ LR+
Sbjct: 68 ALHTMNFDVIKGKPLRI 84
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E + F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDGIDDERLWKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I C + + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L G+ + VG+
Sbjct: 156 KKMNGMLLNGRKVFVGQ 172
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-----NYAYVNFQHTKDAEH 67
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKG 121
A+ +MN + G+ +R+ + P+ S G
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|351714346|gb|EHB17265.1| Nucleolysin TIA-1 isoform p40 [Heterocephalus glaber]
Length = 386
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I CK+ + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VG+
Sbjct: 156 EKMNGMLLNDRKVFVGQ 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + +GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSS-----NYAYVNFQHPKDAEH 67
Query: 90 AISSMNLFDLGGQYLRV 106
A+ +MN + G+ LR+
Sbjct: 68 ALHTMNFDVIKGKPLRI 84
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E + F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDGIDDERLWKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E+++ +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEMSGKSIFVGRA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+N+AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAANKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E++K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEITGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|126273035|ref|XP_001367894.1| PREDICTED: nucleolysin TIAR isoform 2 [Monodelphis domestica]
Length = 371
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 98 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 157
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 158 GGQWLGGRQIRTNWATRKPPAPKSTQ 183
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 67
Query: 95 NLFDLGGQYLRVGRAITP 112
N + G+ ++V A TP
Sbjct: 68 NGRKILGKEVKVNWATTP 85
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E++K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEITGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I C + + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L G+ + VG+
Sbjct: 156 EKMNGMLLNGRKVFVGQ 172
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + +GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSS-----NYAYVNFQHPKDAEH 67
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKG 121
A+ +MN + G+ LR+ + P+ S G
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMG 99
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ D+ +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R+ Y ++ ++ + + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVG 99
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I CK+ + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKVLYDTASAFGNILSCKVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+ +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|126273037|ref|XP_001367935.1| PREDICTED: nucleolysin TIAR isoform 3 [Monodelphis domestica]
Length = 385
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 112 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 171
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 172 GGQWLGGRQIRTNWATRKPPAPKSTQ 197
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 67
Query: 95 NLFDLGGQYLRVGRAITP 112
N + G+ ++V A TP
Sbjct: 68 NGRKILGKEVKVNWATTP 85
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E++K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEITGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|196009388|ref|XP_002114559.1| hypothetical protein TRIADDRAFT_28438 [Trichoplax adhaerens]
gi|190582621|gb|EDV22693.1| hypothetical protein TRIADDRAFT_28438 [Trichoplax adhaerens]
Length = 292
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I+V + PD+ ++S F FG + ++ + S+ + +GYGF+ Y+ K + A+ SM
Sbjct: 93 IFVGDLSPDIDTTLLRSAFNQFGHVSDARVVKDSATGKPRGYGFVSYQFKHEAENAMQSM 152
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTS 127
N LGG+ +R A P A + + S++
Sbjct: 153 NGAWLGGRNIRTNWATRKPGATTNRQNSDSSST 185
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAIS 92
Y+ ++ TE+ I +F FG IK CKL G+ P YGF+EY K ++ A+
Sbjct: 8 YIGNLDRQTTEQSIGELFAKFGAIKRCKLITEHGGNDP-----YGFVEYAEKNSAARALD 62
Query: 93 SMNLFDLGGQYLRVGRA 109
+MN + G + ++V A
Sbjct: 63 AMNGYSFGSRAIKVNWA 79
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 23 DEITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
DEI + +YN +YV ++ TEE ++ +F FGPI ++ K Y FI Y
Sbjct: 191 DEIYLQTAVYNCTVYVGNLSAGTTEETLRRIFIPFGPIADIRV------FPDKNYAFIRY 244
Query: 82 ETKQASNEAI 91
+ + AI
Sbjct: 245 MSHDHATNAI 254
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR + + ++ E+ AK + +Y+ + D+ +E +K +F FGP K+
Sbjct: 168 VFVGRFKSRKEREA---ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S + KG+GF+ +E + + +A+ MN +L G+ + VGRA
Sbjct: 225 DES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMK-QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|344250807|gb|EGW06911.1| Nucleolysin TIA-1 [Cricetulus griseus]
Length = 387
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|116787897|gb|ABK24684.1| unknown [Picea sitchensis]
Length = 375
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+I+V I +TE++ K F FG + ++ Q S R +G+GFI ++++Q E IS
Sbjct: 134 KIFVGGIPTTITEDEFKDYFSKFGKVAEHQIMQDRSTGRSRGFGFITFDSEQVVEEIISQ 193
Query: 94 MNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMP 130
+ +LGG+ + + +A P S GP + P
Sbjct: 194 GKMIELGGKQVEIKKA--EPKKPSSDAGPVHGIDNRP 228
>gi|126273033|ref|XP_001367857.1| PREDICTED: nucleolysin TIAR isoform 1 [Monodelphis domestica]
Length = 388
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQ 200
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H ++ E+ ++ +F FG ++ K+ + S+ + +G+GF+ +E
Sbjct: 182 ELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNG-QSRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ GQ L VGRA
Sbjct: 241 HEEAQKAVDHMNGKEVSGQLLYVGRA 266
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + +F G I ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMG 99
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAK--LYNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + QS + E+ K NR +YV ++ + +E +K VF +G I
Sbjct: 263 VGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITS 322
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ SS KG+GF+ + + + + +A++ MN +G + L V A
Sbjct: 323 AKVMTESS--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I K+ + H +G+GF+ +ET +A+ +AI++M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E+++ +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEMSGKSIFVGRA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+N+AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAANKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H ++ E+ ++ +F FG ++ K+ + S+ + +G+GF+ +E
Sbjct: 182 ELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNG-QSRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ GQ L VGRA
Sbjct: 241 HEEAQKAVDHMNGKEVSGQLLYVGRA 266
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + +F G I ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMG 99
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAK--LYNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + QS + E+ K NR +YV ++ + +E +K VF +G I
Sbjct: 263 VGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITS 322
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ SS KG+GF+ + + + + +A++ MN +G + L V A
Sbjct: 323 AKVMTESS--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I K+ + H +G+GF+ +ET +A+ +AI++M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E+++ +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEMSGKSIFVGRA 266
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+N+AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAANKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|45383446|ref|NP_989687.1| nucleolysin TIAR isoform 1 [Gallus gallus]
gi|28883275|gb|AAO49721.1| TIAR [Gallus gallus]
Length = 388
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQ 200
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL--QQGSSPHR-------------HKGYGFI 79
+YV ++ D+TE I +F GP K CK+ +Q S R + Y F+
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSSRRVNSVGFSVLQHTSNDPYCFV 69
Query: 80 EYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
E+ + + A+++MN + G+ ++V A TP
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 102
>gi|268574300|ref|XP_002642127.1| C. briggsae CBR-RNP-4 protein [Caenorhabditis briggsae]
Length = 142
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +IH + TE+D+ F +G IK L KGY +EYET++ ++EAI
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEASEAIEKS 116
Query: 95 NLFDLGGQYLRV 106
N DL GQ ++V
Sbjct: 117 NDTDLLGQNVKV 128
>gi|348566571|ref|XP_003469075.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Cavia porcellus]
Length = 388
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|291404907|ref|XP_002718787.1| PREDICTED: TIA-1 related protein-like [Oryctolagus cuniculus]
Length = 450
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 174 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 233
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 234 GGQWLGGRQIRTNWATRKPPAPKSTQ 259
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++MN
Sbjct: 87 YVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAMN 144
Query: 96 LFDLGGQYLRVGRAITP 112
+ G+ ++V A TP
Sbjct: 145 GRKILGKEVKVNWATTP 161
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 227 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDES-GKSKGFGFVSFER 285
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 286 HEDARKAVDEMNGKELNGKQIYVGRA 311
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 146 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 200
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 201 EKMNGMLLNDRKVFVGR 217
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 305 QIYVGRAQKKVERQTELKRKFEQMK-QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFG 363
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 364 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 399
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I C + + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L G+ + VG+
Sbjct: 156 KKMNGMLLNGRKVFVGQ 172
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-----NYAYVNFQHTKDAEH 67
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKG 121
A+ +MN + G+ +R+ + P+ S G
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|449282273|gb|EMC89133.1| Nucleolysin TIAR, partial [Columba livia]
Length = 378
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 105 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 164
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 165 GGQWLGGRQIRTNWATRKPPAPKSTQ 190
>gi|426223382|ref|XP_004005854.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Ovis aries]
gi|440907815|gb|ELR57912.1| Nucleolysin TIA-1 isoform p40 [Bos grunniens mutus]
Length = 386
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|354500962|ref|XP_003512565.1| PREDICTED: nucleolysin TIAR [Cricetulus griseus]
Length = 336
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 120 GGQWLGGRQIRTNWATRKPPAPKSTQ 145
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR + + ++ E+ AK + +Y+ + D+ +E +K +F FGP K+
Sbjct: 65 VFVGRFKSRKEREA---ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 121
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S + KG+GF+ +E + + +A+ MN +L G+ + VGRA
Sbjct: 122 DESG-KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 163
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 51 SVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107
F AFG I CK+ + GS KGYGF+ +ET++A+ AI MN L + + VG
Sbjct: 14 DTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 68
Query: 108 R 108
R
Sbjct: 69 R 69
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +A + +Y+ + D+ +E +K VF +G K+ SS + KG+GF+ +++
Sbjct: 458 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS-GKSKGFGFVSFDS 516
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+A+ +A+ MN D+ GQ + V RA
Sbjct: 517 HEAAKKAVEEMNGRDINGQLIFVARA 542
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 5 PHVQVGRPSNMPQAQSVIDEITEEAKLYN--RIYVASIHPDLTEEDIKSVFEAFGPIKYC 62
PH + S QA S DE + Y +YV +H D+TE+ + F A GP+
Sbjct: 258 PHGECS-ASAREQAHSGQDEEMDVEAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSI 316
Query: 63 KLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106
++ + R GY ++ + + +A+ +MN + G+ +R+
Sbjct: 317 RICRDQLTRRSLGYAYVNFLHLADAQKALDTMNFDVIQGKSIRL 360
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++YV ++ + +E ++ F +FG I K+ Q + KG+G I + + + + +A++
Sbjct: 571 KLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDALKAMTE 628
Query: 94 MNLFDLGGQYLRV 106
MN LG + L +
Sbjct: 629 MNGRILGSKPLSI 641
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I K+ S KGY F+ ++ + A++ AI M
Sbjct: 377 VFIKNLDKSIDNKTLYEHFSAFGRILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 434
Query: 95 NLFDLGGQYLRVGR 108
N L G + VGR
Sbjct: 435 NGKLLQGCKVFVGR 448
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E+++ +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEMSGKSIFVGRA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+N+AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAANKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|344255843|gb|EGW11947.1| Nucleolysin TIAR [Cricetulus griseus]
Length = 353
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 77 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 136
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 137 GGQWLGGRQIRTNWATRKPPAPKSTQ 162
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 195 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 253
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 254 HEDANKAVEEMNGKEISGKVIFVGRA 279
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 114 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 168
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 169 EKMNGMLLNDRKVFVGR 185
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 309 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 364
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 365 EMNGRIVGSKPLYVALA 381
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H ++ E+ ++ +F FG ++ K+ + S+ + +G+GF+ +E
Sbjct: 182 ELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNG-QSRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ GQ L VGRA
Sbjct: 241 HEEAQKAVDHMNGKEVSGQLLYVGRA 266
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + +F G I ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMG 99
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAK--LYNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + QS + E+ K NR +YV ++ + +E +K VF +G I
Sbjct: 263 VGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITS 322
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ SS KG+GF+ + + + + +A++ MN +G + L V A
Sbjct: 323 AKVMTESS--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I K+ + H +G+GF+ +ET +A+ +AI++M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|172035929|ref|YP_001802430.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|354556024|ref|ZP_08975322.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
gi|171697383|gb|ACB50364.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|353552023|gb|EHC21421.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
Length = 98
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ D+T ED+ VF +G +K L R +G+GF+E E+ AI ++
Sbjct: 3 IYVGNLVYDVTSEDLTEVFSEYGTVKRVSLPTDRETGRPRGFGFVEMESDDQETAAIETL 62
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
+ D G+ +RV +A N+ + G
Sbjct: 63 DGADWMGRQMRVNKAKPRENSGRNGSG 89
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP +L S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I C + + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L G+ + VG+
Sbjct: 156 KKMNGMLLNGRKVFVGQ 172
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-----NYAYVNFQHTKDAEH 67
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKG 121
A+ +MN + G+ +R+ + P+ S G
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>gi|406946237|gb|EKD77506.1| glycine-rich RNA-binding protein [uncultured bacterium]
Length = 113
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+IYV ++ + TE++++ F FG I+ KL + R KG+GFI Y + Q A+++
Sbjct: 5 KIYVGNLSYNTTEDELRDYFSQFGNIEDIKLIIDFNTGRSKGFGFITYASIQDCESAVTT 64
Query: 94 MNLFDLGGQYLRVGRA 109
N D+GG+ L+V A
Sbjct: 65 ANGVDMGGRKLKVNIA 80
>gi|14714709|gb|AAH10496.1| Tial1 protein [Mus musculus]
gi|148685700|gb|EDL17647.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_a [Mus musculus]
gi|149067624|gb|EDM17176.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1
(mapped), isoform CRA_d [Rattus norvegicus]
Length = 375
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQ 184
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 95 NLFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHMPTAAAVAAAAATAK- 143
N + G+ ++V A TP N H G P +T + +A A + A+
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 144 IQAMDGGATNAVGVLS 159
++ M G + G +S
Sbjct: 129 VKDMATGKSKGYGFVS 144
>gi|27924240|gb|AAH45086.1| Tia1 protein, partial [Xenopus laevis]
Length = 427
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 153 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 212
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 213 GGQWLGGRQIRTNWATRKPPAPKSTQ 238
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 35/185 (18%)
Query: 1 MQHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIK 60
+ HFP G P+ E+ +YV ++ D+TE I +F GP K
Sbjct: 23 LTHFPRENPGSPTGCD---------MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCK 73
Query: 61 YCKLQQGSSPHRHKG---------------YGFIEYETKQASNEAISSMNLFDLGGQYLR 105
CK+ + R G Y F+E+ + + A+++MN + G+ ++
Sbjct: 74 SCKMITEQTDGRRVGASVSFPVMPNANNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 133
Query: 106 VGRAITP-------PNALHSSKG---PAPSTSHMPTAAAVAAAAATAK-IQAMDGGATNA 154
V A TP N H G P +T + +A A + A+ ++ M G +
Sbjct: 134 VNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKG 193
Query: 155 VGVLS 159
G +S
Sbjct: 194 YGFVS 198
>gi|297687497|ref|XP_002821249.1| PREDICTED: nucleolysin TIAR isoform 4 [Pongo abelii]
Length = 396
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 110 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 169
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 170 GGQWLGGRQIRTNWATRKPPAPKSTQ 195
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTA 132
N + G+ ++V A TP S K P ++ +P A
Sbjct: 69 NGRKILGKEVKVNWATTP----SSQKKILPVSTPVPNA 102
>gi|77695912|ref|NP_001029097.1| nucleolysin TIAR isoform 2 [Homo sapiens]
gi|73998714|ref|XP_852319.1| PREDICTED: nucleolysin TIAR isoform 2 [Canis lupus familiaris]
gi|114633030|ref|XP_001154768.1| PREDICTED: nucleolysin TIAR isoform 6 [Pan troglodytes]
gi|311271911|ref|XP_003133244.1| PREDICTED: nucleolysin TIAR isoform 2 [Sus scrofa]
gi|338716472|ref|XP_003363459.1| PREDICTED: nucleolysin TIAR [Equus caballus]
gi|390473251|ref|XP_003734574.1| PREDICTED: nucleolysin TIAR isoform 2 [Callithrix jacchus]
gi|395827973|ref|XP_003787162.1| PREDICTED: nucleolysin TIAR isoform 1 [Otolemur garnettii]
gi|397510639|ref|XP_003825700.1| PREDICTED: nucleolysin TIAR isoform 2 [Pan paniscus]
gi|402881652|ref|XP_003904380.1| PREDICTED: nucleolysin TIAR isoform 2 [Papio anubis]
gi|426253186|ref|XP_004020281.1| PREDICTED: nucleolysin TIAR isoform 2 [Ovis aries]
gi|426366374|ref|XP_004050233.1| PREDICTED: nucleolysin TIAR isoform 2 [Gorilla gorilla gorilla]
gi|158255404|dbj|BAF83673.1| unnamed protein product [Homo sapiens]
gi|380783709|gb|AFE63730.1| nucleolysin TIAR isoform 2 [Macaca mulatta]
gi|383408327|gb|AFH27377.1| nucleolysin TIAR isoform 2 [Macaca mulatta]
gi|384942768|gb|AFI34989.1| nucleolysin TIAR isoform 2 [Macaca mulatta]
gi|410218476|gb|JAA06457.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410257384|gb|JAA16659.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410296998|gb|JAA27099.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
Length = 392
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQ 201
>gi|89272470|emb|CAJ83096.1| OTTXETP00000006403 [Xenopus (Silurana) tropicalis]
Length = 389
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQ 200
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 26/151 (17%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKG---------------YGFI 79
+YV ++ D+TE I +F GP K CK+ + R G Y F+
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQTDSRRVGASVSFPVLPNTNNDPYCFV 69
Query: 80 EYETKQASNEAISSMNLFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHM 129
E+ + + A+++MN + G+ ++V A TP N H G P +T +
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 129
Query: 130 PTAAAVAAAAATAK-IQAMDGGATNAVGVLS 159
+A A + A+ ++ M G + G +S
Sbjct: 130 KSAFAPFGKISDARVVKDMATGKSKGYGFVS 160
>gi|6678349|ref|NP_033409.1| nucleolysin TIAR [Mus musculus]
gi|61557246|ref|NP_001013211.1| nucleolysin TIAR [Rattus norvegicus]
gi|2500589|sp|P70318.1|TIAR_MOUSE RecName: Full=Nucleolysin TIAR; AltName: Full=TIA-1-related protein
gi|1592563|gb|AAC52870.1| RNA binding protein TIAR [Mus musculus]
gi|12848609|dbj|BAB28019.1| unnamed protein product [Mus musculus]
gi|60552455|gb|AAH91409.1| Tia1 cytotoxic granule-associated RNA binding protein-like 1
[Rattus norvegicus]
gi|148685702|gb|EDL17649.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_c [Mus musculus]
gi|149067621|gb|EDM17173.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1
(mapped), isoform CRA_a [Rattus norvegicus]
Length = 392
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQ 201
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|441599875|ref|XP_004087575.1| PREDICTED: nucleolysin TIAR isoform 2 [Nomascus leucogenys]
gi|441599878|ref|XP_003255076.2| PREDICTED: nucleolysin TIAR isoform 1 [Nomascus leucogenys]
gi|119569773|gb|EAW49388.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_d [Homo sapiens]
Length = 353
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 77 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 136
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 137 GGQWLGGRQIRTNWATRKPPAPKSTQ 162
>gi|395742091|ref|XP_003777693.1| PREDICTED: nucleolysin TIAR [Pongo abelii]
Length = 386
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 110 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 169
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 170 GGQWLGGRQIRTNWATRKPPAPKSTQ 195
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTA 132
N + G+ ++V A TP S K P ++ +P A
Sbjct: 69 NGRKILGKEVKVNWATTP----SSQKKILPVSTPVPNA 102
>gi|297687495|ref|XP_002821248.1| PREDICTED: nucleolysin TIAR isoform 3 [Pongo abelii]
Length = 386
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 100 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 159
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 160 GGQWLGGRQIRTNWATRKPPAPKSTQ 185
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 95 NLFDLGGQYLRVGRAITPP--------NALHSSKG---PAPSTSHMPTAAAVAAAAATAK 143
N + G+ ++V A TP N H G P +T + +A A + A+
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKILPVNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 128
Query: 144 -IQAMDGGATNAVGVLS 159
++ M G + G +S
Sbjct: 129 VVKDMATGKSKGYGFVS 145
>gi|417410268|gb|JAA51610.1| Putative apoptosis-promoting rna-binding protein tia-1/tiar rrm
superfamily, partial [Desmodus rotundus]
Length = 382
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 105 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 164
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 165 GGQWLGGRQIRTNWATRKPPAPKSTQ 190
>gi|355562824|gb|EHH19418.1| hypothetical protein EGK_20118, partial [Macaca mulatta]
gi|355766617|gb|EHH62534.1| hypothetical protein EGM_20905, partial [Macaca fascicularis]
gi|440900070|gb|ELR51281.1| Nucleolysin TIAR, partial [Bos grunniens mutus]
Length = 381
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 105 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 164
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 165 GGQWLGGRQIRTNWATRKPPAPKSTQ 190
>gi|351710501|gb|EHB13420.1| Nucleolysin TIAR [Heterocephalus glaber]
Length = 392
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQ 201
>gi|297687493|ref|XP_002821247.1| PREDICTED: nucleolysin TIAR isoform 2 [Pongo abelii]
gi|410976207|ref|XP_003994514.1| PREDICTED: nucleolysin TIAR isoform 2 [Felis catus]
Length = 393
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 117 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 177 GGQWLGGRQIRTNWATRKPPAPKSTQ 202
>gi|335775520|gb|AEH58599.1| nucleolysin TIAR-like protein, partial [Equus caballus]
Length = 242
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 55 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 114
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 115 GGQWLGGRQIRTNWATRKPPAPKSTQ 140
>gi|126304035|ref|XP_001381740.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Monodelphis domestica]
Length = 409
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 122 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 181
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 182 GGQWLGGRQIRTNWATRKP--------PAPKSTY 207
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAIS 92
YV ++ D+TE I +F GP K CK+ G+ P Y F+E+ + + A++
Sbjct: 24 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEHRHAAAALA 78
Query: 93 SMNLFDLGGQYLRVGRAITP 112
+MN + G+ ++V A TP
Sbjct: 79 AMNGRKIMGKEVKVNWATTP 98
>gi|119569772|gb|EAW49387.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_c [Homo sapiens]
Length = 336
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 120 GGQWLGGRQIRTNWATRKPPAPKSTQ 145
>gi|4507499|ref|NP_003243.1| nucleolysin TIAR isoform 1 [Homo sapiens]
gi|194205608|ref|XP_001492932.2| PREDICTED: nucleolysin TIAR isoform 2 [Equus caballus]
gi|311271909|ref|XP_001928970.2| PREDICTED: nucleolysin TIAR isoform 1 [Sus scrofa]
gi|332835148|ref|XP_001154534.2| PREDICTED: nucleolysin TIAR isoform 2 [Pan troglodytes]
gi|345792875|ref|XP_865423.2| PREDICTED: nucleolysin TIAR isoform 18 [Canis lupus familiaris]
gi|390473245|ref|XP_002756491.2| PREDICTED: nucleolysin TIAR isoform 1 [Callithrix jacchus]
gi|395827975|ref|XP_003787163.1| PREDICTED: nucleolysin TIAR isoform 2 [Otolemur garnettii]
gi|397510637|ref|XP_003825699.1| PREDICTED: nucleolysin TIAR isoform 1 [Pan paniscus]
gi|402881650|ref|XP_003904379.1| PREDICTED: nucleolysin TIAR isoform 1 [Papio anubis]
gi|403259379|ref|XP_003922194.1| PREDICTED: nucleolysin TIAR [Saimiri boliviensis boliviensis]
gi|426253184|ref|XP_004020280.1| PREDICTED: nucleolysin TIAR isoform 1 [Ovis aries]
gi|426366372|ref|XP_004050232.1| PREDICTED: nucleolysin TIAR isoform 1 [Gorilla gorilla gorilla]
gi|267131|sp|Q01085.1|TIAR_HUMAN RecName: Full=Nucleolysin TIAR; AltName: Full=TIA-1-related protein
gi|189310|gb|AAA36384.1| nucleolysin TIAR [Homo sapiens]
gi|158254826|dbj|BAF83384.1| unnamed protein product [Homo sapiens]
gi|261858270|dbj|BAI45657.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1
[synthetic construct]
gi|380783711|gb|AFE63731.1| nucleolysin TIAR isoform 1 [Macaca mulatta]
gi|383408329|gb|AFH27378.1| nucleolysin TIAR isoform 1 [Macaca mulatta]
gi|384942770|gb|AFI34990.1| nucleolysin TIAR isoform 1 [Macaca mulatta]
gi|410218474|gb|JAA06456.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410257382|gb|JAA16658.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410296996|gb|JAA27098.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
Length = 375
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQ 184
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 95 NLFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHMPTAAAVAAAAATAK- 143
N + G+ ++V A TP N H G P +T + +A A + A+
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 144 IQAMDGGATNAVGVLS 159
++ M G + G +S
Sbjct: 129 VKDMATGKSKGYGFVS 144
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T++ + ++V + D+ +E +K +F +GP + K+ + +S + KG+GF+ YET +
Sbjct: 192 TKDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDAS-GKSKGFGFVRYETHE 250
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
A+ +A+ ++ + G+ L VGRA
Sbjct: 251 AAQKAVLDLHGKSINGKVLYVGRA 274
Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
G+P + +Q D+ ++ + N I++ ++ + + +F AFG I CK+
Sbjct: 86 GKPFRLMWSQP--DDRLRKSGVGN-IFIKNLDKSIDNRALFYLFSAFGNILSCKVV--CD 140
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+ KGY ++ +++ A+N AI MN L + + VGR P
Sbjct: 141 DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 37 VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96
V + PD+TE+ + F GP+++ ++ + GYG++ + + A+++MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 97 FDL 99
FDL
Sbjct: 81 FDL 83
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR + + ++ E+ AK + +Y+ + D+ +E +K +F FGP K+
Sbjct: 65 VFVGRFKSRKEREA---ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 121
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S + KG+GF+ +E + + +A+ MN +L G+ + VGRA
Sbjct: 122 DESG-KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 163
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 51 SVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107
F AFG I CK+ + GS KGYGF+ +ET++A+ AI MN L + + VG
Sbjct: 14 DTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 68
Query: 108 R 108
R
Sbjct: 69 R 69
>gi|148909135|gb|ABR17668.1| unknown [Picea sitchensis]
Length = 411
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+++V I +TE++ K F FG + ++ Q + R +G+GFI +ET+QA E IS
Sbjct: 130 KVFVGGIPTSITEDEFKDYFSKFGKVVEHQIMQDRNTGRSRGFGFITFETEQAVEEIISQ 189
Query: 94 MNLFDLGGQYLRVGRA 109
+ +LGG+ + + +A
Sbjct: 190 GRMLELGGKQVEIKKA 205
>gi|119569771|gb|EAW49386.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_b [Homo sapiens]
Length = 282
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 77 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 136
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 137 GGQWLGGRQIRTNWATRKPPAPKSTQ 162
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|395507384|ref|XP_003758005.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Sarcophilus harrisii]
Length = 394
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 107 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 166
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 167 GGQWLGGRQIRTNWATRKP--------PAPKSTY 192
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+YV ++ D+TE I +F GP K CK+ G+ P Y F+E+ + + A+
Sbjct: 8 MYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEHRHAAAAL 62
Query: 92 SSMNLFDLGGQYLRVGRAITP 112
++MN + G+ ++V A TP
Sbjct: 63 AAMNGRKIMGKEVKVNWATTP 83
>gi|54303906|gb|AAV33303.1| aging-associated gene 7 protein [Homo sapiens]
Length = 374
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQ 184
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 95 NLFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHMPTAAAVAAAAATAK- 143
N + G+ ++V A TP N H G P +T + +A A + A+
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 144 IQAMDGGATNAVGVLS 159
++ M G + G +S
Sbjct: 129 VKDMATGKSKGYGFVS 144
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|297687491|ref|XP_002821246.1| PREDICTED: nucleolysin TIAR isoform 1 [Pongo abelii]
gi|410976205|ref|XP_003994513.1| PREDICTED: nucleolysin TIAR isoform 1 [Felis catus]
Length = 376
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 100 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 159
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 160 GGQWLGGRQIRTNWATRKPPAPKSTQ 185
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 95 NLFDLGGQYLRVGRAITPP--------NALHSSKG---PAPSTSHMPTAAAVAAAAATAK 143
N + G+ ++V A TP N H G P +T + +A A + A+
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKILPVNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 128
Query: 144 -IQAMDGGATNAVGVLS 159
++ M G + G +S
Sbjct: 129 VVKDMATGKSKGYGFVS 145
>gi|62088002|dbj|BAD92448.1| TIA1 protein variant [Homo sapiens]
Length = 464
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 137 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 196
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 197 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 231
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 40 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 94
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 95 RHAAAALAAMNGRKIMGKEVKVNWATTP 122
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K F +G K+ S + KG+GF+ +E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPS-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN D+ G+ + VGRA
Sbjct: 241 HEDANKAVDDMNGKDVNGKIMFVGRA 266
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L++G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|380088391|emb|CCC13655.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 606
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQAS 87
++R+YV +IH +TE+D+++VFE FG +++ +LQ+ + R +GYGF++Y T +++
Sbjct: 283 FHRLYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDN-GRSRGYGFVQYFTPEST 337
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 34/61 (55%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+TE+ + ++V + L ++K FE GP+ ++ + +R KG G++E++++
Sbjct: 177 LTEDERDRRTVFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKSE 236
Query: 85 Q 85
+
Sbjct: 237 E 237
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|340506650|gb|EGR32741.1| u2 snrnp auxilliary splicing factor, putative [Ichthyophthirius
multifiliis]
Length = 276
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRH---KGYGFIEYE 82
+EE N+IY+ + L + +IK + E FG +KY L + + ++ KGY F EYE
Sbjct: 38 SEEGIQENKIYMGGLPTYLKDPEIKKLCETFGKLKYFNLAKQQNENKEWVSKGYCFFEYE 97
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
K+ ++ AI ++N G + L+V + N L
Sbjct: 98 DKEVTDRAIKALNGLPCGDRKLKVSKVTRDQNKL 131
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H D+ E+ ++ +F FG + K+ + H +G+GF+ +E
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGH-SRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ G+ L VGRA
Sbjct: 241 HEEAQKAVMDMNGKEVSGRLLYVGRA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPVRIMWSQRDPGLRKSGVG 99
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+++AI++M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVV--CDDHGSRGFGFVHFETHEAAHQAIATM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|17553656|ref|NP_499734.1| Protein CPF-2 [Caenorhabditis elegans]
gi|3877650|emb|CAB05746.1| Protein CPF-2 [Caenorhabditis elegans]
Length = 336
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I D++E+ I+S+F G + K+ + KGYGFIE+ Q + AI ++
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 95 NLFDLGGQYLRVGRAITPPNALH---SSKGPAPSTSHMPTAAAVAAAAATAKI 144
N ++L G+ LRV A N SS PAP + P A A +I
Sbjct: 80 NGYELSGRILRVDSAAGGMNMEEFGSSSNAPAPVEEN-PYGPECDAGKAPERI 131
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 157 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 215
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 216 HEDANKAVEEMNGKEISGKIIFVGRA 241
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 76 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 130
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 131 EKMNGMLLNDRKVFVGR 147
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 271 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 326
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 327 EMNGRIVGSKPLYVALA 343
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 40/87 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ + + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|242280537|ref|YP_002992666.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
gi|242123431|gb|ACS81127.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
Length = 87
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ TE+++++ FEAFG + KL + R +G+GF+E E A EAI ++
Sbjct: 5 IYVGNLPWSATEDEVRAAFEAFGEVVSVKLIEDRETGRPRGFGFVEMEDAGAM-EAIDNL 63
Query: 95 NLFDLGGQYLRVGRA 109
+ D GG+ L+V A
Sbjct: 64 DGKDFGGRNLKVNEA 78
>gi|268534532|ref|XP_002632397.1| C. briggsae CBR-CYN-13 protein [Caenorhabditis briggsae]
Length = 332
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV D+TE+ + + F FG + + +H+G+GF+E++ + + AI +M
Sbjct: 13 LYVGGFSEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAMDGGATNA 154
N +L G+ +RV A PP A S+ P + AA +G T +
Sbjct: 73 NESELFGKTIRVNFA-RPPKATERSQKPVWADDEWLKKYGRGGEAAPGDDADGEGTITES 131
Query: 155 VGVLSKLSQVFF 166
+KL +V+
Sbjct: 132 TSTAAKLPRVYL 143
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T E K N ++V ++ P++ EE+IK F FG I + + + + KG+GF+ ++ +
Sbjct: 210 TGETKFTN-VFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDEN-DKSKGFGFVNFDDPE 267
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
A+ A+ +MN LG + + VGRA
Sbjct: 268 AARAAVETMNNSQLGSRTIYVGRA 291
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL--QQGSSPHRHKGYGFIEYETKQASNEAIS 92
I++ ++ + + + F AFGPI CK+ Q G R KGYGF+ +ET +A+N AI
Sbjct: 128 IFIKNLDESIDNKALHDTFIAFGPILSCKIAHQDG----RSKGYGFVHFETDEAANLAIE 183
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSS 119
+N L G+ + V + + + L ++
Sbjct: 184 KVNGMQLVGKKVFVAKFVKRSDRLAAT 210
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + + E + ++F G + ++ + + R GYG++ Y + + A+ ++
Sbjct: 40 LYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEAL 99
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 100 NYTPINGKTIRIMWSHRDPSTRKSGVG 126
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEINGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|431895395|gb|ELK04911.1| Nucleolysin TIAR [Pteropus alecto]
Length = 428
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 152 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 211
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 212 GGQWLGGRQIRTNWATRKPPAPKSTQ 237
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|395841399|ref|XP_003793527.1| PREDICTED: LOW QUALITY PROTEIN: nucleolysin TIA-1 isoform p40,
partial [Otolemur garnettii]
Length = 480
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 149 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 208
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 209 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 243
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++H D+ E+ ++ +F FG + K+ + H +G+GF+ +E
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGH-SRGFGFVNFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ G+ L VGRA
Sbjct: 241 HEEAQKAVMDMNGKEVSGRLLYVGRA 266
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEVIKGQPVRIMWSQRDPGLRKSGVG 99
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I CK+ H +G+GF+ +ET +A+++AI++M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVV--CDDHGSRGFGFVHFETHEAAHQAIATM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F +GP K+ + + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN D+ G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKDMNGKSMFVGRA 266
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 DKMNGMLLNDRKVFVGR 172
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVG 99
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|417410125|gb|JAA51540.1| Putative apoptosis-promoting rna-binding protein tia-1/tiar rrm
superfamily, partial [Desmodus rotundus]
Length = 367
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 90 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 149
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 150 GGQWLGGRQIRTNWATRKPPAPKSTQ 175
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++MN
Sbjct: 3 YVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAMN 60
Query: 96 LFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHMPTAAAVAAAAATAK-I 144
+ G+ ++V A TP N H G P +T + +A A + A+ +
Sbjct: 61 GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVV 120
Query: 145 QAMDGGATNAVGVLS 159
+ M G + G +S
Sbjct: 121 KDMATGKSKGYGFVS 135
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS 68
VGR N ++ E+ +A + IY+ + D+ ++ ++ VF +G K+ S
Sbjct: 169 VGRFKNRQDREA---ELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDS 225
Query: 69 SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ + KG+GF+ + + +A+ +A+ MN D+ GQ L VGRA
Sbjct: 226 TG-KSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRA 265
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 12 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 72 NFDTIKGKSIRL 83
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E ++ F +FG I
Sbjct: 262 VGRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISR 321
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ + R KG+G I + + + + A++ MN LG + L + A
Sbjct: 322 VKVMK--EEGRSKGFGLICFSSPEEATRAMTEMNGRILGSKPLNIALA 367
>gi|376297960|ref|YP_005169190.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans ND132]
gi|323460522|gb|EGB16387.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans ND132]
Length = 87
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ TEED+++ FE FG + KL R +G+GF+E + Q + AI S+
Sbjct: 5 IYVGNLPWSATEEDVRAAFETFGEVISVKLVNDRETGRPRGFGFVEMD-DQGALAAIESL 63
Query: 95 NLFDLGGQYLRVGRAITPP 113
+ D GG+ L+V A P
Sbjct: 64 DGSDFGGRNLKVNEARPRP 82
>gi|2281006|dbj|BAA21559.1| T-cluster binding protein [Homo sapiens]
gi|119569770|gb|EAW49385.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_a [Homo sapiens]
Length = 265
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 120 GGQWLGGRQIRTNWATRKPPAPKSTQ 145
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|300796220|ref|NP_001179985.1| nucleolysin TIAR [Bos taurus]
gi|296472594|tpg|DAA14709.1| TPA: TIA1 cytotoxic granule-associated RNA binding protein-like 1
[Bos taurus]
Length = 380
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQ 184
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 95 NLFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHMPTAAAVAAAAATAK- 143
N + G+ ++V A TP N H G P +T + +A A + A+
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 144 IQAMDGGATNAVGVLS 159
++ M G + G +S
Sbjct: 129 VKDMATGKSKGYGFVS 144
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|220905189|ref|YP_002480501.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869488|gb|ACL49823.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 88
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IYV ++ TE+ ++ +F A G KL R +G+GF+E E +A N AIS++
Sbjct: 5 IYVGNLPWSATEDAVRDLFSAHGDPISVKLISDRETGRARGFGFVEMEDDEAQN-AISAL 63
Query: 95 NLFDLGGQYLRVGRA 109
N D GG+ LRV +A
Sbjct: 64 NGMDFGGRALRVNKA 78
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F +GP K+ + + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN D+ G+ + VGRA
Sbjct: 241 HEDAQKAVDDMNGKDMNGKAIYVGRA 266
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 DKMNGMLLNDRKVFVGR 172
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + S + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ + ++K +F FG K+ + SS + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEMSGKAIFVGRA 266
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K F +G K+ S + KG+GF+ +E
Sbjct: 188 ELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPS-GKSKGFGFVSFER 246
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN D+ G+ + VGRA
Sbjct: 247 HEDANKAVDDMNGKDVNGKIMFVGRA 272
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 161
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 162 EKMNGMLLNDRKVFVGR 178
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L++G R KG+GF+ + + + + +A++
Sbjct: 302 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG----RSKGFGFVCFSSPEEATKAVT 357
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 358 EMNGRIVGSKPLYVALA 374
>gi|428174818|gb|EKX43711.1| hypothetical protein GUITHDRAFT_163728 [Guillardia theta CCMP2712]
Length = 501
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 4 FPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCK 63
FP V + QA + ++ E L ++ V ++H D+ E+D++++F FG + +
Sbjct: 222 FPVVVQASQAEKNQAARLAAQVAGELDLPAKLQVDNLHMDIAEDDLQTLFSPFGKVLSVR 281
Query: 64 LQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP-----PNALHS 118
+ + R G G +E++T Q + +A++ +N FDL G+ L V R I ++ S
Sbjct: 282 INKEHG--RSTGKGVVEFKTLQDAQKAVAHLNGFDLAGKALNV-RIIQSAGSGYTGSMSS 338
Query: 119 SKGPA 123
S GPA
Sbjct: 339 SGGPA 343
>gi|281338083|gb|EFB13667.1| hypothetical protein PANDA_003438 [Ailuropoda melanoleuca]
Length = 340
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 105 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 164
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 165 GGQWLGGRQIRTNWATRKPPAPKSTQ 190
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F +GP K+ + + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN D+ G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKDMNGKSMFVGRA 266
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 DKMNGMLLNDRKVFVGR 172
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVG 99
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ + ++K +F FG K+ + SS + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEMSGKAIFVGRA 266
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +Y+ +I ++T+E+ + +FE FG I L Q+G S +G+GF+ +
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKS----RGFGFVNFS 281
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T ++ A+ MN ++ GQ L VGRA
Sbjct: 282 THDSAQAAVDEMNDKEIKGQKLYVGRA 308
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 197
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 198 KHVNGMLLNDKKVFVGHHIS 217
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 114 NYTLIKGKPCRI 125
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IYV +++P+ ++++ + +FE +G I L + + +G+GF+ Y T +++ +A+
Sbjct: 239 FTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQD-GKSRGFGFVNYTTHESAYKAV 297
Query: 92 SSMNLFDLGGQYLRVGRA 109
+N D GQ L VGRA
Sbjct: 298 DELNGKDFKGQDLYVGRA 315
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+ +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAAQQAIKHV 207
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 208 NGMLLNEKKVYVGHHI 223
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +Y+ +I ++T+E+ + +FE FG I L Q+G S +G+GF+ +
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKS----RGFGFVNFS 281
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T ++ A+ MN ++ GQ L VGRA
Sbjct: 282 THDSAQAAVDEMNDKEIKGQKLYVGRA 308
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 197
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 198 KHVNGMLLNDKKVFVGHHIS 217
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 114 NYTLIKGKPCRI 125
>gi|449488383|ref|XP_002188190.2| PREDICTED: nucleolysin TIA-1-like, partial [Taeniopygia guttata]
Length = 537
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSS 119
LGG+ +R A P A S+
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKST 181
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFSEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IYV +I ++T+++ + +FE +G I L + + +G+GF+ Y + + +A+
Sbjct: 241 FTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAV 300
Query: 92 SSMNLFDLGGQYLRVGRA 109
+N D GQ L VGRA
Sbjct: 301 DELNDSDFHGQKLYVGRA 318
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASN 88
+ +++ ++ + + + F AFG I CK+ + G+S KGYGF+ YET +A++
Sbjct: 148 HGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAVDELGNS----KGYGFVHYETAEAAS 203
Query: 89 EAISSMNLFDLGGQYLRVGRAI 110
+AI S+N L + + VG I
Sbjct: 204 QAIKSVNGMLLNEKKVFVGHHI 225
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 34/72 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y + A+ +
Sbjct: 63 LYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 122
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 123 NYTLIKGRPCRI 134
>gi|301759213|ref|XP_002915456.1| PREDICTED: nucleolysin TIAR-like [Ailuropoda melanoleuca]
Length = 477
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 201 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 260
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 261 GGQWLGGRQIRTNWATRKPPAPKSTQ 286
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++MN
Sbjct: 114 YVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAMN 171
Query: 96 LFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHMPTAAAVAAAAATAK-I 144
+ G+ ++V A TP N H G P +T + +A A + A+ +
Sbjct: 172 GRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVV 231
Query: 145 QAMDGGATNAVGVLS 159
+ M G + G +S
Sbjct: 232 KDMATGKSKGYGFVS 246
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
EE K + +YV +I P++T+E+ + +F FG I + + S + +G+GF+ Y +
Sbjct: 224 EEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDS-GKSRGFGFVNYVDHE 282
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
+ A+ +N D GQ L VGRA
Sbjct: 283 NAQTAVDDLNDKDFHGQKLYVGRA 306
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 195
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 196 KHVNGMLLNDKKVFVGHHIS 215
>gi|119223939|gb|AAI26843.1| TIAL1 protein [Bos taurus]
Length = 279
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 67 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 126
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 127 GGQWLGGRQIRTNWATRKPPAPKSTQ 152
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T + + ++V + D+ +E +K +F +GP + K+ + +S + KG+GF+ YET +
Sbjct: 192 TRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDAS-GKSKGFGFVRYETHE 250
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
A+ +A+ ++ + G+ L VGRA
Sbjct: 251 AAQKAVLDLHGKSINGKVLYVGRA 274
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
G+P + +Q D+ ++ + N I++ ++ + + +F AFG I CK+
Sbjct: 86 GKPFRLMWSQP--DDRLRKSGVGN-IFIKNLDKCIDNRALFYLFSAFGNILSCKVV--CD 140
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+ KGY ++ +++ A+N AI MN L + + VGR P
Sbjct: 141 DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 36/70 (51%)
Query: 37 VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96
V + PD+TE+ + F GP+++ ++ + GYG++ + + A+++MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 97 FDLGGQYLRV 106
+ G+ R+
Sbjct: 82 DLINGKPFRL 91
>gi|268563939|ref|XP_002647049.1| C. briggsae CBR-CPF-2 protein [Caenorhabditis briggsae]
Length = 335
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V +I D+TEE I+ +F G + K+ + KGYGFIE+ ++ AI +
Sbjct: 14 VFVGNISYDVTEETIRQIFTKAGHVLSIKMVHDRETGKPKGYGFIEFPDIATADTAIRVL 73
Query: 95 NLFDLGGQYLRVGRA 109
N ++LGG+ LRV A
Sbjct: 74 NGYELGGRVLRVDSA 88
>gi|255760011|ref|NP_001157551.1| nucleolysin TIA-1 isoform 3 [Mus musculus]
gi|23271442|gb|AAH23813.1| Tia1 protein [Mus musculus]
Length = 285
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSS 119
LGG+ +R A P A S+
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKST 181
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEG-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 137 ELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMTDESG-KSKGFGFVSFER 195
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A++ MN +L G+ + +GRA
Sbjct: 196 HEDAQKAVNEMNGKELNGKQIYIGRA 221
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A AI
Sbjct: 56 IFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENGS-----KGYGFVHFETQEAVERAI 110
Query: 92 SSMNLFDLGGQYLRVG--------------RAITPPNALHSSKGPAPSTSHMPTAAAVAA 137
M+ L + VG RA N + G H+
Sbjct: 111 EKMSGMLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFG 170
Query: 138 AAATAKIQAMDGGATNAVGVLS 159
A K+ + G + G +S
Sbjct: 171 PALRVKVMTDESGKSKGFGFVS 192
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T + + ++V + D+ +E +K +F +GP + K+ + +S + KG+GF+ YET +
Sbjct: 192 TRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDAS-GKSKGFGFVRYETHE 250
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
A+ +A+ ++ + G+ L VGRA
Sbjct: 251 AAQKAVLDLHGKSINGKVLYVGRA 274
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
G+P + +Q D+ ++ + N I++ ++ + + +F AFG I CK+
Sbjct: 86 GKPFRLMWSQP--DDRLRKSGVGN-IFIKNLDKCIDNRALFYLFSAFGNILSCKVV--CD 140
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+ KGY ++ +++ A+N AI MN L + + VGR P
Sbjct: 141 DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 37 VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96
V + PD+TE+ + F GP+++ ++ + GYG++ + + A+++MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 97 FDL 99
FDL
Sbjct: 81 FDL 83
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 5 PHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL 64
V VGR N + ++++ ++ K +N +Y+ + ++ +E +K FE FG I K+
Sbjct: 82 KKVFVGRFMNRRER---LEQMGDKMKKFNNVYIKNFSEEIDDEKLKIWFETFGKIISAKV 138
Query: 65 QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
G + +G+GF+ YE +A+ +A++ MN + L VGRA
Sbjct: 139 MTGYDG-KGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRA 182
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ S H +GYGF+ +ET++A+ AI +
Sbjct: 17 VFIKNLDKSIDNKALYDTFSAFGNILSCKIV--SDEHGSRGYGFVHFETEEAARNAIEKV 74
Query: 95 NLFDLGGQYLRVGRAITPPNALH 117
N L G+ + VGR + L
Sbjct: 75 NGMLLNGKKVFVGRFMNRRERLE 97
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 9 VGRPSNMPQAQSVIDEITEEAK--LYNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + + + K NR +YV ++ + +E ++ F AFG I
Sbjct: 179 VGRAQKRAERQAELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITS 238
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
K+ + R KG+GF+ + + + + +A++ MN
Sbjct: 239 AKVM--TEGGRSKGFGFVCFSSPEEATKAVTEMN 270
>gi|301758210|ref|XP_002914948.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 2 [Ailuropoda
melanoleuca]
gi|410954993|ref|XP_003984143.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Felis catus]
Length = 375
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 157 GGQWLGGRQIRTNWATRKP--------PAPKSTY 182
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|355724191|gb|AES08143.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1
[Mustela putorius furo]
Length = 183
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 88 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 147
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 148 GGQWLGGRQIRTNWATRKPPAPKSTQ 173
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 19/138 (13%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAIS 92
YV ++ D+TE I +F GP K CK+ + P Y F+E+ + + A++
Sbjct: 1 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-----YCFVEFYEHRDAAAALA 55
Query: 93 SMNLFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHMPTAAAVAAAAATA 142
+MN + G+ ++V A TP N H G P +T + +A A + A
Sbjct: 56 AMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 115
Query: 143 K-IQAMDGGATNAVGVLS 159
+ ++ M G + G +S
Sbjct: 116 RVVKDMATGKSKGYGFVS 133
>gi|148666753|gb|EDK99169.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_c
[Mus musculus]
Length = 293
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 105 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 164
Query: 95 NLFDLGGQYLRVGRAITPPNALHSS 119
LGG+ +R A P A S+
Sbjct: 165 GGQWLGGRQIRTNWATRKPPAPKST 189
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 10 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 64
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 65 RHAAAALAAMNGRKIMGKEVKVNWATTP 92
>gi|41055734|ref|NP_956476.1| TIA1 cytotoxic granule-associated RNA binding protein 1 [Danio
rerio]
gi|28277744|gb|AAH45485.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
gi|44890544|gb|AAH66734.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P+++ +D+++ F FG I ++ + + + KGYGFI + K + AI M
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHM 129
N LGG+ +R A P+A S+ A S+ H+
Sbjct: 159 NGQWLGGRQIRTNWATRKPSAPKSNNEGA-SSKHL 192
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+YV ++ D+TE I VF GP K CK+ G+ P Y F+E+ + + A+
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-----YCFVEFYENRHAAAAL 65
Query: 92 SSMNLFDLGGQYLRVGRAITP 112
++MN + G+ ++V A TP
Sbjct: 66 AAMNGRKILGKDMKVNWASTP 86
>gi|449267712|gb|EMC78625.1| Nucleolysin TIA-1 isoform p40, partial [Columba livia]
Length = 361
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 88 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 147
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 148 GGQWLGGRQIRTNWATRKP--------PAPKSTY 173
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 36 YVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAIS 92
YV ++ D+TE I +F GP K CK+ G+ P Y F+E+ + + A++
Sbjct: 1 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEHRHAAAALA 55
Query: 93 SMNLFDLGGQYLRVGRAITP 112
+MN + G+ ++V A TP
Sbjct: 56 AMNGRKIMGKEVKVNWATTP 75
>gi|426253188|ref|XP_004020282.1| PREDICTED: nucleolysin TIAR isoform 3 [Ovis aries]
Length = 385
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 109 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 168
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 169 GGQWLGGRQIRTNWATRKPPAPKSTQ 194
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 67
Query: 95 NLFDLGGQYLRVGRAITP 112
N + G+ ++V A TP
Sbjct: 68 NGRKILGKEVKVNWATTP 85
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
V VGR + + ++ E+ AK + +Y+ + D+ +E +K VF +GP K+
Sbjct: 64 KVFVGRFKSRKEREA---ELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKVM 120
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S + KG+GF+ +E + + +A+ MN +L G+ + VGRA
Sbjct: 121 TDESG-KSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRA 163
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 51 SVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108
F AFG I CK+ + KGYGF+ +ET++A+ AI MN L + + VGR
Sbjct: 14 DTFSAFGNILSCKVV--CDENGSKGYGFVXFETQEAAERAIEKMNGMLLNDRKVFVGR 69
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
+ ++A+ + +Y+ + +L ++ + +FE +G I K+ S +++G+GF+ +E
Sbjct: 184 LGDKARCFTNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDS-GKNRGFGFVSFEEP 242
Query: 85 QASNEAISSMNLFDLGGQYLRVGRA 109
++ A+ +N D+GG+ L VGRA
Sbjct: 243 DSAERAVEELNGKDMGGRPLYVGRA 267
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I C++ KGYGF+ +ET++A+N+AIS +
Sbjct: 101 VFIKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAA-SKGYGFVHFETEEAANKAISKV 159
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG+ I
Sbjct: 160 NGMLLNNKKVYVGKFI 175
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HP++TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + + +R+ + P+ S G
Sbjct: 73 NFDAIKNKPIRIMWSQRDPSLRKSGVG 99
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAK--LYNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + QS + E+ K NR +YV ++ L +E ++ F FG I
Sbjct: 264 VGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDERLRKEFGPFGNITS 323
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
K+ ++ R KG+GF+ + + + + +A++ MN
Sbjct: 324 AKVMTDAN-GRSKGFGFVCFSSPEEATKAVTEMN 356
>gi|158255914|dbj|BAF83928.1| unnamed protein product [Homo sapiens]
Length = 375
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K AI M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDGENAIVHM 158
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQ 184
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 95 NLFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHMPTAAAVAAAAATAK- 143
N + G+ ++V A TP N H G P +T + +A A + A+
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 144 IQAMDGGATNAVGVLS 159
++ M G + G +S
Sbjct: 129 VKDMATGKSKGYGFVS 144
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +Y+ ++ +++EE+ + +FE FG I L Q+G S +G+GF+ Y
Sbjct: 222 EEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKS----RGFGFVNYS 277
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T ++ A+ MN ++ GQ L VGRA
Sbjct: 278 THDSAQAAVDEMNDKEVKGQKLYVGRA 304
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 193
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 194 KHVNGMLLNDKKVFVGHHIS 213
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 110 NYTLIKGKPCRI 121
>gi|37681959|gb|AAQ97857.1| TIA1 cytotoxic granule-associated RNA binding protein [Danio rerio]
gi|160773363|gb|AAI55270.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P+++ +D+++ F FG I ++ + + + KGYGFI + K + AI M
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVRDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHM 129
N LGG+ +R A P+A S+ A S+ H+
Sbjct: 159 NGQWLGGRQIRTNWATRKPSAPKSNNEGA-SSKHL 192
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+YV ++ D+TE I VF GP K CK+ G+ P Y F+E+ + + A+
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-----YCFVEFYENRHAAAAL 65
Query: 92 SSMNLFDLGGQYLRVGRAITP 112
++MN + G+ ++V A TP
Sbjct: 66 AAMNGRKILGKDMKVNWASTP 86
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ + ++K +F FG K+ + SS + KG+GF+ YE
Sbjct: 111 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSS-GKSKGFGFVSYEK 169
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 170 HEDANKAVEEMNGKEMSGKAIFVGRA 195
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 30 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 84
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 85 EKMNGMLLNDRKVFVGR 101
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 225 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 280
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 281 EMNGRIVGSKPLYVALA 297
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR + + ++ E+ AK + +Y+ + D+ +E +K +F FGP K+
Sbjct: 65 VFVGRFKSRKEREA---ELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKVMT 121
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
S + KG+GF+ +E + + +A+ MN +L G+ + VGRA
Sbjct: 122 DESG-KSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRA 163
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 53 FEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108
F AFG I CK+ + GS KGYGF+ +ET++A+ AI MN L + + VGR
Sbjct: 16 FSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 69
>gi|354491765|ref|XP_003508025.1| PREDICTED: nucleolysin TIAR-like [Cricetulus griseus]
Length = 285
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSS 119
LGG+ +R A P A S+
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKST 181
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|89272716|emb|CAJ83609.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
Length = 389
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T +DIK+ F FG I ++ + + + KGYGF+ + K + AI+ M
Sbjct: 108 VFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQM 167
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 168 GGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E L +YV ++ D+TE I VF GP K CK+ G+ P Y F+E+
Sbjct: 2 EEDLPRTLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMDTAGNDP-----YCFVEFFEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + ++++MN + G+ ++V A TP
Sbjct: 57 RHAAASLAAMNGRKIMGKEVKVNWATTP 84
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ +Y +I D +EE+ K +FEA+G I L++ + KG+GF+ +E +++ +A+
Sbjct: 231 FTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEK-DHEGKSKGFGFVNFENHESAVKAV 289
Query: 92 SSMNLFDLGGQYLRVGRA 109
+N ++ GQ + VGRA
Sbjct: 290 DELNDKEINGQKIYVGRA 307
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F +G K+ + + KG+GF+ +E
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPT-GKSKGFGFVSFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN D+ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGAITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|344283909|ref|XP_003413713.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Loxodonta
africana]
Length = 375
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 157 GGQWLGGRQIRTNWATRKP--------PAPKSTY 182
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFYEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|291386623|ref|XP_002709696.1| PREDICTED: TIA1 cytotoxic granule-associated RNA binding
protein-like [Oryctolagus cuniculus]
Length = 386
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 168 GGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNE 89
N YV ++ D+TE I +F GP K CK+ G+ P Y F+E+ + +
Sbjct: 18 NAGYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEHRHAAA 72
Query: 90 AISSMNLFDLGGQYLRVGRAITP 112
A+++MN + G+ ++V A TP
Sbjct: 73 ALAAMNGRKIMGKEVKVNWATTP 95
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 15 MPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHK 74
+P+AQ + EI E + + +YV + + T++ + +F FG I+ C + + + K
Sbjct: 149 IPRAQR-MREIGETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKEDD--KSK 205
Query: 75 GYGFIEYETKQASNEAISSMNLFDL-GGQYLRVGRA 109
G+GF+ +E + + A+ MN + L G+ L VGRA
Sbjct: 206 GFGFVSFENPEDAEAAVKEMNEYQLPSGKKLYVGRA 241
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GP+ ++ + + R GY ++ Y+ + A+ +M
Sbjct: 14 LYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPDAERALDTM 73
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 74 NFDPVFGRPIRIMWSQRDPSLRRSGVG 100
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + E KL +Y+ ++ + + ++ FE FG I
Sbjct: 238 VGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKNLDDSVDDAQLRKAFEKFGVITS 297
Query: 62 CKL---QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ ++G S KG+GF+ + + + A+S MN LG + L V A
Sbjct: 298 AKVMTDEKGQS----KGFGFVCFSSPDEATRAVSEMNNQKLGNKPLYVALA 344
>gi|188219593|ref|NP_071320.2| nucleolysin TIA-1 isoform p40 isoform 1 [Homo sapiens]
gi|114577932|ref|XP_001141475.1| PREDICTED: uncharacterized protein LOC459303 isoform 1 [Pan
troglodytes]
gi|397521826|ref|XP_003830987.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Pan paniscus]
gi|119620229|gb|EAW99823.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_a [Homo sapiens]
gi|410254976|gb|JAA15455.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410298558|gb|JAA27879.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410353837|gb|JAA43522.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 375
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 157 GGQWLGGRQIRTNWATRKP--------PAPKSTY 182
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VG + + QS ++E + AK N I++ ++ P+ T++D++ +F+ FG I L
Sbjct: 215 VYVGHHISKKERQSKVEE--QRAKFTN-IFIKNLEPEFTQKDLEDMFKPFGEIVSAALSV 271
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
G KG+ F+ Y T A+ +A+ +N ++ G+ L VGRA
Sbjct: 272 GED-GLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRA 313
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + G+S +G+ F+ YET +A++ AI
Sbjct: 147 IFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNS----RGFAFVHYETGEAADAAI 202
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
S+N L + + VG I+
Sbjct: 203 KSVNGMLLNDKKVYVGHHIS 222
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 17 QAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76
+ Q+ IDE+ + +Y+ ++ ++T E++ +F +GP+ +Q S +H+G+
Sbjct: 225 ERQAKIDEVRAH---FTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADES-GKHRGF 280
Query: 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
GF+ YE +++++A+ +++ D G L V RA
Sbjct: 281 GFVNYENHESASKAVEALHDKDYKGNILYVARA 313
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F AFG I CK+ S+ KGYGF+ Y T +++ AI +
Sbjct: 147 IFIKNLDETIDNKALHDTFAAFGDILSCKVAMDST-GASKGYGFVHYVTAESAEAAIKGV 205
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 206 NGMQLNDKVVFVG 218
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 14 NMPQAQSVIDEITEEAKLYNR----IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
N P A S + T A ++ +YV + P +TE + +F GP+ ++ + +
Sbjct: 34 NTPSAPSSVSTATPNASPASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAV 93
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKG 121
R GY ++ Y + A+ +N + + R+ + P+ + +G
Sbjct: 94 TRRSLGYAYVNYLNAADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQG 145
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+Y+ ++ + +E +++ F FG I CK+ + +G+GF+ + + +A++ M
Sbjct: 343 LYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKDDK-GVSRGFGFVCFSAPDEATKAVAEM 401
Query: 95 NLFDLGGQYLRVGRA 109
N LG + L V A
Sbjct: 402 NGKMLGSKPLYVSLA 416
>gi|296223620|ref|XP_002757701.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Callithrix
jacchus]
gi|403260488|ref|XP_003922703.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 375
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 157 GGQWLGGRQIRTNWATRKP--------PAPKSTY 182
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|380816028|gb|AFE79888.1| nucleolysin TIA-1 isoform p40 isoform 1 [Macaca mulatta]
gi|383421175|gb|AFH33801.1| nucleolysin TIA-1 isoform p40 isoform 1 [Macaca mulatta]
Length = 375
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
LGG+ +R A P PAP +++
Sbjct: 157 GGQWLGGRQIRTNWATRKP--------PAPKSTY 182
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ A + IYV ++ D+ E+ ++ +F FG + K+ + S+ + +G+GFI +E
Sbjct: 182 ELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNG-QSRGFGFINFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN ++ GQ L VGRA
Sbjct: 241 HEEAQKAVDHMNGKEVSGQLLYVGRA 266
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + +F G I ++ + + R GY +I ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + GQ +R+ + P S G
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMG 99
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAK--LYNR-----IYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + E+ K NR +YV ++ + ++ +K VF +G I
Sbjct: 263 VGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITS 322
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ SS KG+GF+ + + + + +A++ MN +G + L V A
Sbjct: 323 AKVMTESS--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F FG I K+ + H +G+GF+ +ET +A+ +AI++M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTM 158
Query: 95 NLFDLGGQYLRVG 107
N L + + VG
Sbjct: 159 NGMLLNDRKVFVG 171
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ + ++K +F FG K+ + SS + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSS-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEMSGKAIFVGRA 266
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VG + + QS ++E + AK N I++ ++ P+ T++D++ +F+ FG I L
Sbjct: 215 VYVGHHISKKERQSKVEE--QRAKFTN-IFIKNLEPEFTQKDLEDMFKPFGEIVSAALSV 271
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
G KG+ F+ Y T A+ +A+ +N ++ G+ L VGRA
Sbjct: 272 GED-GLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRA 313
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + G+S +G+ F+ YET +A++ AI
Sbjct: 147 IFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNS----RGFAFVHYETGEAADAAI 202
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
S+N L + + VG I+
Sbjct: 203 KSVNGMLLNDKKVYVGHHIS 222
>gi|238007140|gb|ACR34605.1| unknown [Zea mays]
gi|413926095|gb|AFW66027.1| hypothetical protein ZEAMMB73_185087 [Zea mays]
Length = 366
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
HV GR + + + IT++ +I++ + P LTE+++K F ++G + ++
Sbjct: 99 HVIDGRTVEVKRTVPREEMITKDGPKTRKIFIGGLPPSLTEDELKDHFSSYGNVVEHQIM 158
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPN-ALHSSKG 121
S R +G+GFI +E++ + IS + DLGG+ + + +A + + HSS G
Sbjct: 159 LDHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSNG 215
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F +G K+ + + KG+GF+ +E
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPT-GKSKGFGFVSFEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN D+ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + D+ +E +K +F +G K+ + + KG+GF+ +E
Sbjct: 188 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPT-GKSKGFGFVSFEK 246
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN D+ G+ + VGRA
Sbjct: 247 HEDANKAVEEMNGKDINGKMVFVGRA 272
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET+ A++ AI
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQDAADRAI 161
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 162 EKMNGMLLNDRKVFVGR 178
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 302 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 357
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 358 EMNGRIVGSKPLYVALA 374
>gi|330791359|ref|XP_003283761.1| hypothetical protein DICPUDRAFT_74732 [Dictyostelium purpureum]
gi|325086384|gb|EGC39775.1| hypothetical protein DICPUDRAFT_74732 [Dictyostelium purpureum]
Length = 630
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 18/117 (15%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RIYV IH +TEE I+ +F+ +G I++ + + P K + FI++ T++++ AIS
Sbjct: 301 RIYVGYIHLSVTEEQIRVIFQPYGDIEFINIH--TKPGISK-FAFIQFRTQESAKRAISE 357
Query: 94 MNLFDLGGQYLRV----------GRAITPP---NALHSSKGPAPSTSHMPTAAAVAA 137
+N ++L G+ L++ G + P N +H G AP+ ++ TA+AVAA
Sbjct: 358 LNGYELMGKNLKLNMVSQEKNANGTYVQIPQINNIVHH--GYAPNQAYNATASAVAA 412
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,621,468,843
Number of Sequences: 23463169
Number of extensions: 99499853
Number of successful extensions: 538420
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 12169
Number of HSP's successfully gapped in prelim test: 6052
Number of HSP's that attempted gapping in prelim test: 508492
Number of HSP's gapped (non-prelim): 31338
length of query: 173
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 41
effective length of database: 9,262,057,059
effective search space: 379744339419
effective search space used: 379744339419
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)