BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2141
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 213 bits (542), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 134/161 (83%), Gaps = 6/161 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSNMPQAQ VIDE+ EEAK +NRIYVASIHPDL+EEDIKSVFEAFGPI YCKL
Sbjct: 200 NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 259
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
QG+S H HKGYGFIEY KQA +EAI+SMNLFDLGGQ LRVGR+ITPPNAL P+
Sbjct: 260 QGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA-----CPT 314
Query: 126 T-SHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLSQVF 165
T S MPTAAAVAAAAATAKIQA+D A+NAV LS+ + V
Sbjct: 315 TNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVM 355
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
L R+YV SI +L E+ I+ F FGPIK + +HKG+ F+EYE + + A
Sbjct: 128 LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLA 187
Query: 91 ISSMNLFDLGGQYLRVGRAITPPNA 115
+ MN +GG+ ++VGR P A
Sbjct: 188 LEQMNGALMGGRNIKVGRPSNMPQA 212
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 170 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 229
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 230 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 286
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 98 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 157
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 158 LEQMNSVMLGGRNIKVGR 175
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 204 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 263
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 264 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 321
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 132 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 191
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 192 LEQMNSVMLGGRNIKVGR 209
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 95/118 (80%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 204 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 263
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 264 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPG 321
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 132 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 191
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 192 LEQMNSVMLGGRNIKVGR 209
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 198 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 257
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 258 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 314
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 126 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 185
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 186 LEQMNSVMLGGRNIKVGR 203
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRPSN+ QAQ +ID++ EEA+ +NRIYVAS+H DL+++DIKSVFEAFG IK C L
Sbjct: 199 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 258
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKGYGFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 259 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 315
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
+ R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F+EYE +A+ A
Sbjct: 127 IMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 186
Query: 91 ISSMNLFDLGGQYLRVGR 108
+ MN LGG+ ++VGR
Sbjct: 187 LEQMNSVMLGGRNIKVGR 204
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 95/117 (81%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
+++VGRP ++ QAQ +I+++ EEA+ YNRIYVASIHPDL+++DIKSVFEAFG IK C L
Sbjct: 156 NIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLA 215
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGP 122
+ + +HKG+GFIEYE Q+S +A+SSMNLFDLGGQYLRVG+A+TPP L + P
Sbjct: 216 REPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTP 272
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QSV + + R+YV SI+ +L E+ I+ F FGPIK + S +HKG+ F
Sbjct: 72 QSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAF 131
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGR 108
+EYE +A+ A+ MN LGG+ ++VGR
Sbjct: 132 VEYEVPEAAQLALEQMNSVMLGGRNIKVGR 161
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
++R+ V++IH +LT+ED+K++FE FG I++ LQ+ +R KG+G+I+Y ++ A+
Sbjct: 339 FHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISARNAL 397
Query: 92 SSMNLFDLGGQYLRV 106
MN FDL G+ +RV
Sbjct: 398 EKMNGFDLAGRNMRV 412
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
++EE + ++V+ + LT ++ FE GP++ ++ + R KG ++E+
Sbjct: 232 LSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I L + S R KGYGFI + + + A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ +RVG
Sbjct: 324 LNGFELAGRPMRVG 337
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
R+YV S+H ++TE+ ++ +FE FG I+ +L S R KGYGFI + + + +A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 94 MNLFDLGGQYLRVG 107
+N F+L G+ ++VG
Sbjct: 311 LNGFELAGRPMKVG 324
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 7 VQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ 66
V VGR N ++ E+ +A + +Y+ + D+ +E +K VF +G K+
Sbjct: 167 VFVGRFKNRKDREA---ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 223
Query: 67 GSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
SS + KG+GF+ +++ +A+ +A+ MN D+ GQ + VGRA
Sbjct: 224 DSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE+ + F GP+ ++ + R GY ++ + + +A+ +M
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 95 NLFDLGGQYLRV 106
N + G+ +R+
Sbjct: 72 NFDIIKGKSIRL 83
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 9 VGRPSNMPQAQSVIDEITEEAKLYN-------RIYVASIHPDLTEEDIKSVFEAFGPIKY 61
VGR + Q+ + ++ E+ K ++Y+ ++ + +E +++ F +FG I
Sbjct: 262 VGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISR 321
Query: 62 CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
K+ Q + KG+G I + + + + +A++ MN LG + L + A
Sbjct: 322 VKVMQ--EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I K+ S KGY F+ ++ + A++ AI M
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 95 NLFDLGGQYLRVGR 108
N L G + VGR
Sbjct: 158 NGKLLKGCKVFVGR 171
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS DE+ + IY+ +I PD+TEE+ + +FE FG I L + + +G+GF
Sbjct: 221 QSKFDEMKAN---FTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGF 276
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ Y T +++ A+ M+ ++ Q L VGRA
Sbjct: 277 VNYSTHESAQAAVDEMHDKEVKTQKLYVGRA 307
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 196
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 197 KHVNGMLLNDKKVFVGHHIS 216
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 53 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 112
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 113 NYTLIKGKPCRI 124
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ E+AKL+ +YV + D +E +K FE +G I K+ + KG+GF+ +ET
Sbjct: 174 ELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAFET 232
Query: 84 KQASNEAISSMNLFDLG-GQYLRVGRA 109
+A+ A+ ++N D+G G+ L V RA
Sbjct: 233 TEAAEAAVQALNGKDMGEGKSLYVARA 259
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + I F AFG I CK+ ++G+S KGYGF+ +ET++A+N +I
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS----KGYGFVHFETEEAANTSI 147
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L G+ + VG+ I
Sbjct: 148 DKVNGMLLNGKKVYVGKFI 166
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + D+ E + F + GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 95 NLFDL 99
N FDL
Sbjct: 64 N-FDL 67
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + ++ ++ F +G I K+ R KG+GF+ + + A++ +
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMT-DEEGRSKGFGFVCFNAASEATCAVTEL 347
Query: 95 NLFDLGGQYLRVGRA 109
N +G + L V A
Sbjct: 348 NGRVVGSKPLYVALA 362
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
EE K + +YV +I D TEE+ + +FE FG I L + + + +G+GF+ + +
Sbjct: 229 EEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHD 288
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
+ A+ ++N D GQ L VGRA
Sbjct: 289 NAAAAVEALNDKDFKGQKLYVGRA 312
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+ AI
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAAQNAI 200
Query: 92 SSMNLFDLGGQYLRVGRAI 110
+N L + + VG I
Sbjct: 201 KHVNGMLLNDKKVFVGHHI 219
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 117 NYTLIKGRPCRI 128
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 23 DEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
D EE K Y +YV +I+ + T+E + +F FGPI L++ + + KG+GF+ Y
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNY 266
Query: 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSK 120
E + + +A+ ++N +L G+ L VGRA +H K
Sbjct: 267 EKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLK 305
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HPD+ + + F FG I K+ + + KG+GF+ +E + A+ EAI ++
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 95 NLFDLGGQYLRV 106
N L GQ + V
Sbjct: 187 NGMLLNGQEIYV 198
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/87 (18%), Positives = 38/87 (43%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P ++E + +F G + ++ + + GY ++ + +A +AI +
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ R+ + P+ G
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSG 126
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V ++ + +E ++ F +G I K+ + + + KG+GF+ + T + + +AI+
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 95 NLFDLGGQYLRV 106
N + G+ L V
Sbjct: 383 NQQIVAGKPLYV 394
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 19 QSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
QS DE+ + IYV +I+P++T+++ +++FE +G + L + + +G+GF
Sbjct: 231 QSKFDEMKAN---FTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGF 287
Query: 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ + + + +++A+ +N + GQ L VGRA
Sbjct: 288 VNFTSHEDASKAVQELNEKEFHGQNLYVGRA 318
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + + KGYGF+ YET +A+++AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHV 209
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 210 NGMLLNEKKVYVGHHI 225
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F G + ++ + + R GY ++ Y T +A+ +
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 123 NYTLIKGRPCRI 134
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASN 88
+ +Y+ +I D+TEE+ + +FE FG I L Q+G S +G+GF+ + T +++
Sbjct: 229 FTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKS----RGFGFVNFSTHESAQ 284
Query: 89 EAISSMNLFDLGGQYLRVGRA 109
A+ MN ++ Q L VGRA
Sbjct: 285 AAVDEMNEKEIRTQKLYVGRA 305
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 194
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 195 KHVNGMLLNDKKVFVGHHIS 214
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 111 NYTLIKGKPCRI 122
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
V VG+ + +S +EI + IYV +I + +EED+K +F +G I L+
Sbjct: 209 EVFVGKHISKKDRESKFEEIKAN---FTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLE 265
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ + + KG+GF+ YE +A+ +A+ +N ++ GQ + VGRA
Sbjct: 266 K-DAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRA 308
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + E + +F G + ++ + + + GY ++ Y + +AI +
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG--------PAPSTSHMPTAAAVAAAAATAKIQA 146
N + G+ R+ + P+A S G PA + + + K+
Sbjct: 114 NYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVAT 173
Query: 147 MDGGATNAVGVL 158
D G + G +
Sbjct: 174 DDMGQSKCFGFV 185
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HP + + + F FG I CK+ + K +GF+ YET +A+ AI ++
Sbjct: 142 IFIKNLHPAIDNKALHDTFSTFGKILSCKVAT-DDMGQSKCFGFVHYETAEAAEAAIENV 200
Query: 95 NLFDLGGQYLRVGRAIT 111
N L + + VG+ I+
Sbjct: 201 NGMLLNDREVFVGKHIS 217
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + E ++ F+ FG I ++ + + KG+GF+ + + + + +AI+ M
Sbjct: 338 LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDET-GKSKGFGFVCFSSPEEATKAITEM 396
Query: 95 N 95
N
Sbjct: 397 N 397
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 23 DEITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
DE+ ++ N +Y + LTE+ ++ F FG I ++ KGY F+ +
Sbjct: 203 DEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV------FPDKGYSFVRF 256
Query: 82 ETKQASNEAISSMNLFDLGGQYLRV 106
+ +++ AI S+N + G ++
Sbjct: 257 SSHESAAHAIVSVNGTTIEGHVVKC 281
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F FGP K+ S + KG+GF+ +E
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN +L G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I+V ++ + + + AFG I C + + GS KGYGF+ +ET +A+ AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-----KGYGFVHFETHEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L G+ + VG+
Sbjct: 156 KKMNGMLLNGRKVFVGQ 172
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGP---IKYCK--LQQGSSPHRHKGYGFIEYETKQASNE 89
+YV +HPD+TE + F GP I+ C+ + GSS Y ++ ++ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-----NYAYVNFQHTKDAEH 67
Query: 90 AISSMNLFDLGGQYLRVGRAITPPNALHSSKG 121
A+ +MN + G+ +R+ + P+ S G
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG 99
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRI--------YVASIHPDLTEEDIKSVFEAFG 57
+ VGR + Q+ + E+ K +RI YV ++ + +E ++ F FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK-QDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFG 318
Query: 58 PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95
I K+ R KG+GF+ + + + + +A++ MN
Sbjct: 319 TITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMN 354
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IY+ +I P++ +E+ + +FE FG I L + S + +G+GF+ + T +++ A+
Sbjct: 222 FTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAV 280
Query: 92 SSMNLFDLGGQYLRVGRA 109
MN ++ Q L VGRA
Sbjct: 281 EEMNDKEVRSQKLYVGRA 298
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G S KGYGF+ YET +A+N AI
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVS----KGYGFVHYETAEAANNAI 187
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 188 KHVNGMLLNDKKVFVGHHIS 207
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 104 NYTLIKGKPCRI 115
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T+ ++ + ++V + P++T EDIK+ F FG I ++ + + + KGYGF+ + K
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 86 ASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
+ AI M LGG+ +R A P PAP +++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKP--------PAPKSTY 193
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETK 84
E ++ +YV ++ D+TE I +F GP K CK+ G+ P Y F+E+
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-----YCFVEFHEH 56
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITP 112
+ + A+++MN + G+ ++V A TP
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTP 84
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 23 DEITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
DE+ ++ N +Y + LTE+ ++ F FG I ++ KGY F+ +
Sbjct: 203 DEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV------FPDKGYSFVRF 256
Query: 82 ETKQASNEAISSMNLFDLGGQYLRV 106
+ +++ AI S+N + G ++
Sbjct: 257 NSHESAAHAIVSVNGTTIEGHVVKC 281
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQ 201
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 26/151 (17%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL------------QQGSSPHRHKG---YGFI 79
+YV ++ D+TE I +F GP K CK+ G S +H Y F+
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 80 EYETKQASNEAISSMNLFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHM 129
E+ + + A+++MN + G+ ++V A TP N H G P +T +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 130
Query: 130 PTAAAVAAAAATAK-IQAMDGGATNAVGVLS 159
+A A + A+ ++ M G + G +S
Sbjct: 131 KSAFAPFGKISDARVVKDMATGKSKGYGFVS 161
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 23 DEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYE 82
D + + + +Y I LT++ ++ F FG I ++ KGY F+ +
Sbjct: 212 DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV------FPEKGYSFVRFS 265
Query: 83 TKQASNEAISSMNLFDLGGQYLRV 106
T +++ AI S+N + G ++
Sbjct: 266 THESAAHAIVSVNGTTIEGHVVKC 289
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V + P++T EDIKS F FG I ++ + + + KGYGF+ + K + AI M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSK 120
LGG+ +R A P A S++
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQ 184
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A+++M
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI--TEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 95 NLFDLGGQYLRVGRAITP-------PNALHSSKG---PAPSTSHMPTAAAVAAAAATAK- 143
N + G+ ++V A TP N H G P +T + +A A + A+
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 144 IQAMDGGATNAVGVLS 159
++ M G + G +S
Sbjct: 129 VKDMATGKSKGYGFVS 144
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+Y I LT++ ++ F FG I ++ KGY F+ + T +++ AI S+
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRV------FPEKGYSFVRFSTHESAAHAIVSV 260
Query: 95 NLFDLGGQYLRV 106
N + G ++
Sbjct: 261 NGTTIEGHVVKC 272
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ AK + +Y+ + D+ +E +K +F +GP K+ + + KG+GF+ +E
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFER 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ + +A+ MN D+ G+ + VGRA
Sbjct: 241 HEDAQKAVDEMNGKDMNGKSMFVGRA 266
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++ + + + F AFG I CK+ + GS KGYGF+ +ET++A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 DKMNGMLLNDRKVFVGR 172
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVG 99
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++ + +E ++ F FG I K+ R KG+GF+ + + + + +A++ M
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 95 N 95
N
Sbjct: 354 N 354
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +Y+ +I ++T+E+ + +FE FG I L Q+G S +G+GF+ +
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKS----RGFGFVNFS 281
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T ++ A+ MN ++ GQ L VGRA
Sbjct: 282 THDSAQAAVDEMNDKEIKGQKLYVGRA 308
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 197
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 198 KHVNGMLLNDKKVFVGHHIS 217
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 114 NYTLIKGKPCRI 125
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +Y+ +I ++T+E+ + +FE FG I L Q+G S +G+GF+ +
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKS----RGFGFVNFS 281
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T ++ A+ MN ++ GQ L VGRA
Sbjct: 282 THDSAQAAVDEMNDKEIKGQKLYVGRA 308
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 197
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 198 KHVNGMLLNDKKVFVGHHIS 217
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 114 NYTLIKGKPCRI 125
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +Y+ ++ +++EE+ + +FE FG I L Q+G S +G+GF+ Y
Sbjct: 222 EEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKS----RGFGFVNYS 277
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T ++ A+ MN ++ GQ L VGRA
Sbjct: 278 THDSAQAAVDEMNDKEVKGQKLYVGRA 304
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ---GSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ Q G+S KGYGF+ YET +A+N AI
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNS----KGYGFVHYETAEAANNAI 193
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
+N L + + VG I+
Sbjct: 194 KHVNGMLLNDKKVFVGHHIS 213
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y A+ +
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 110 NYTLIKGKPCRI 121
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ +Y +I D +EE+ K +FEA+G I L++ + KG+GF+ +E +++ +A+
Sbjct: 231 FTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEK-DHEGKSKGFGFVNFENHESAVKAV 289
Query: 92 SSMNLFDLGGQYLRVGRA 109
+N ++ GQ + VGRA
Sbjct: 290 DELNDKEINGQKIYVGRA 307
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
I++ ++HP + + + F AFG I CK+ G S K +GF+ YET +A+ AI
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGIS----KCFGFVHYETAEAAEAAI 196
Query: 92 SSMNLFDLGGQYLRVGRAIT 111
++N L + + VG+ I+
Sbjct: 197 ENVNGMLLNDREVYVGKHIS 216
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + E ++ F+ FG I ++ + + KG+GF+ + + + + +AI+ M
Sbjct: 337 LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDET-GKSKGFGFVCFSSPEEATKAITEM 395
Query: 95 NLFDLGGQYLRVGRA 109
N + G+ L V A
Sbjct: 396 NQRMIYGKPLYVALA 410
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/87 (17%), Positives = 39/87 (44%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++P + E + +F G + ++ + + + GY ++ + + +AI +
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ R+ + P+ + G
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGDG 139
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I+V ++ +TE+D+KSVF FG + + K+ G K GF++Y + + +A+S +
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG------KRCGFVQYANRACAEQALSVL 333
Query: 95 NLFDLGGQYLRVGRAITPPN 114
N LGGQ +R+ +P N
Sbjct: 334 NGTQLGGQSIRLSWGRSPSN 353
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEA-FGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++V + PD+T+ + F+A + +K K+ + R KGYGF+ + + A++
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 94 MNLFDLGGQYL 104
MN GQY
Sbjct: 235 MN-----GQYC 240
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
+I E + +Y ++ P++T+++ + +F FG I C LQ+ + KG+GF+ +E
Sbjct: 218 KIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDED-GKSKGFGFVNFED 276
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +A+ ++ D GQ L V RA
Sbjct: 277 HNEAQKAVDELHDSDFKGQKLFVARA 302
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+Y+ +I +E ++ F FG I CK+ + S +G+GF+ Y + +N+A+S M
Sbjct: 332 LYLKNIPESYDDERLREEFAPFGAITSCKIMRAPS-GVSRGFGFVCYSAPEEANKAVSEM 390
Query: 95 N 95
N
Sbjct: 391 N 391
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F AFG I CK+ ++ GYGF+ YET +A+ AI +
Sbjct: 137 IFIKNLDAGIDNKALHDTFAAFGNILSCKV--ATNETGSLGYGFVHYETAEAAEAAIKHV 194
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 195 NGMLLNDKKVYVGHHI 210
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/61 (19%), Positives = 27/61 (44%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F G + ++ + + R GY ++ + A+ +
Sbjct: 49 LYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 108
Query: 95 N 95
N
Sbjct: 109 N 109
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T + + ++V +I D+ +E +K +F +GP + K+ + +S + KG+GF+ YET +
Sbjct: 192 TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHE 250
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
A+ +A+ ++ + G+ L VGRA
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRA 274
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
G+P + +Q D+ ++ + N I++ ++ + + +F AFG I CK+
Sbjct: 86 GKPFRLMWSQP--DDRLRKSGVGN-IFIKNLDKSIDNRALFYLFSAFGNILSCKVV--CD 140
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+ KGY ++ +++ A+N AI MN L + + VGR P
Sbjct: 141 DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 37 VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96
V + PD+TE+ + F GP+++ ++ + GYG++ + + A+++MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 97 FDL 99
FDL
Sbjct: 81 FDL 83
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IY+ ++ + +E +K F +FG I K+ + KG+G + + + + + +A+ M
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 95 NLFDLGGQYLRV 106
N +G + L V
Sbjct: 362 NGRVVGSKPLHV 373
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T + + ++V +I D+ +E +K +F +GP + K+ + +S + KG+GF+ YET +
Sbjct: 192 TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHE 250
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
A+ +A+ ++ + G+ L VGRA
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRA 274
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
G+P + +Q D+ ++ + N I++ ++ + + +F AFG I CK+
Sbjct: 86 GKPFRLMWSQP--DDRLRKSGVGN-IFIKNLDKSIDNRALFYLFSAFGNILSCKVV--CD 140
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+ KGY ++ +++ A+N AI MN L + + VGR P
Sbjct: 141 DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 37 VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96
V + PD+TE+ + F GP+++ ++ + GYG++ + + A+++MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 97 FDL 99
FDL
Sbjct: 81 FDL 83
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IY+ ++ + +E +K F +FG I K+ + KG+G + + + + + +A+ M
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 95 NLFDLGGQYLRV 106
N +G + L V
Sbjct: 362 NGRIVGSKPLHV 373
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T + + ++V +I D+ +E +K +F +GP + K+ + +S + KG+GF+ YET +
Sbjct: 192 TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHE 250
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
A+ +A+ ++ + G+ L VGRA
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRA 274
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
G+P + +Q D+ ++ + N I++ ++ + + +F AFG I CK+
Sbjct: 86 GKPFRLMWSQP--DDRLRKSGVGN-IFIKNLDKSIDNRALFYLFSAFGNILSCKVV--CD 140
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+ KGY ++ +++ A+N AI MN L + + VGR P
Sbjct: 141 DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 37 VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96
V + PD+TE+ + F GP+++ ++ + GYG++ + + A+++MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 97 FDL 99
FDL
Sbjct: 81 FDL 83
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IY+ ++ + +E +K F +FG I K+ + KG+G + + + + + +A+ M
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 95 NLFDLGGQYLRV 106
N +G + L V
Sbjct: 362 NGRIVGSKPLHV 373
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T + + ++V +I D+ +E +K +F +GP + K+ + +S + KG+GF+ YET +
Sbjct: 192 TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHE 250
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
A+ +A+ ++ + G+ L VGRA
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRA 274
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
G+P + +Q D+ ++ + N I++ ++ + + +F AFG I CK+
Sbjct: 86 GKPFRLMWSQP--DDRLRKSGVGN-IFIKNLDKSIDNRALFYLFSAFGNILSCKVV--CD 140
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+ KGY ++ +++ A+N AI MN L + + VGR P
Sbjct: 141 DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 37 VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96
V + PD+TE+ + F GP+++ ++ + GYG++ + + A+++MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 97 FDL 99
FDL
Sbjct: 81 FDL 83
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IY+ ++ + +E +K F +FG I K+ + KG+G + + + + + +A+ M
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 95 NLFDLGGQYLRV 106
N +G + L V
Sbjct: 362 NGRIVGSKPLHV 373
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T + + ++V +I D+ +E +K +F +GP + K+ + +S + KG+GF+ YET +
Sbjct: 192 TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHE 250
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
A+ +A+ ++ + G+ L VGRA
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRA 274
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
G+P + +Q D+ ++ + N I++ ++ + + +F AFG I CK+
Sbjct: 86 GKPFRLMWSQP--DDRLRKSGVGN-IFIKNLDKSIDNRALFYLFSAFGNILSCKVV--CD 140
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+ KGY ++ +++ A+N AI MN L + + VGR P
Sbjct: 141 DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 37 VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96
V + PD+TE+ + F GP+++ ++ + GYG++ + + A+++MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 97 FDL 99
FDL
Sbjct: 81 FDL 83
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IY+ ++ + +E +K F +FG I K+ + KG+G + + + + + +A+ M
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 95 NLFDLGGQYLRV 106
N +G + L V
Sbjct: 362 NGRIVGSKPLHV 373
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
T + + ++V +I D+ +E +K +F +GP + K+ + +S + KG+GF+ YET +
Sbjct: 192 TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRYETHE 250
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
A+ +A+ ++ + G+ L VGRA
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRA 274
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 10 GRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69
G+P + +Q D+ ++ + N I++ ++ + + +F AFG I CK+
Sbjct: 86 GKPFRLMWSQP--DDRLRKSGVGN-IFIKNLDKSIDNRALFYLFSAFGNILSCKVV--CD 140
Query: 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112
+ KGY ++ +++ A+N AI MN L + + VGR P
Sbjct: 141 DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 37 VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96
V + PD+TE+ + F GP+++ ++ + GYG++ + + A+++MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN- 80
Query: 97 FDL 99
FDL
Sbjct: 81 FDL 83
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
IY+ ++ + +E +K F +FG I K+ + KG+G + + + + + +A+ M
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 95 NLFDLGGQYLRV 106
N +G + L V
Sbjct: 362 NGRIVGSKPLHV 373
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 27 EEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYE 82
EE K + +YV +I+ ++T+E+ + +F FG + L Q+G S +G+GF+ +
Sbjct: 234 EEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKS----RGFGFVNFT 289
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRA 109
T +A+ +A+ +N D GQ L VGRA
Sbjct: 290 THEAAAQAVDELNGKDFRGQDLYVGRA 316
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+++AI +
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAIKHV 208
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 209 NGMLLNEKKVYVGHHI 224
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F G + ++ + + R GY ++ Y T +A+ +
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 95 NLFDLGGQYLRV 106
N + G+ R+
Sbjct: 122 NYTLIKGRPCRI 133
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 24 EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83
E+ +AK + +Y+ + ++ +E +K +F FG K+ + + + KG+GF+ YE
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEK 240
Query: 84 KQASNEAISSMNLFDLGGQYLRVGRA 109
+ +N+A+ MN ++ G+ + VGRA
Sbjct: 241 HEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ ++ + + + F AFG I CK+ + GS KGY F+ +ET++A+++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155
Query: 92 SSMNLFDLGGQYLRVGR 108
MN L + + VGR
Sbjct: 156 EKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +H D+TE + F GP+ ++ + R GY ++ ++ + A+ +M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ +R+ + P+ S G
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG 99
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ + +E ++ F FG I K L+ G R KG+GF+ + + + + +A++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG----RSKGFGFVCFSSPEEATKAVT 351
Query: 93 SMNLFDLGGQYLRVGRA 109
MN +G + L V A
Sbjct: 352 EMNGRIVGSKPLYVALA 368
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 6 HVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQ 65
V VG+ + +S ++E+ Y IYV +I TE++ + +F FG I L+
Sbjct: 224 EVYVGKHVSKKDRESKLEEMKAN---YTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLE 280
Query: 66 QGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
+ + + KG+GF+ +E +A+ +A+ +N ++ GQ + VGRA
Sbjct: 281 KDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRA 323
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I++ ++HP + + + F AFG I K+ + K +GF+ YET++A+ AI S+
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVAT-DDLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 95 NLFDLGGQYLRVGRAIT 111
N L + + VG+ ++
Sbjct: 216 NGMLLNDREVYVGKHVS 232
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 40/87 (45%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV ++P + E + +F G + ++ + + + GY ++ Y + +AI +
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ R+ + P+A S G
Sbjct: 129 NYTPVEGRPCRIMWSQRDPSARRSGDG 155
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++V ++ + E ++ F+ FG I K+ + + KG+GF+ + T + + +AI+ M
Sbjct: 353 LFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDA-GKSKGFGFVCFSTPEEATKAITEM 411
Query: 95 NLFDLGGQYLRVGRA 109
N + G+ L V A
Sbjct: 412 NQRMVNGKPLYVALA 426
>sp|O42847|YFH9_SCHPO Uncharacterized RNA-binding protein C23A1.09 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23A1.09 PE=4 SV=1
Length = 121
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I V +HP+ TEE ++ +F FGP+K L KGY IEY T + + +A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPSTS 127
NL L + L V A P + P PS S
Sbjct: 72 NL-SLLDEKLEVDFAFLEP----PERAPRPSIS 99
>sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1
Length = 296
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+Y+ SI D TEE I + GP+ K+ R KGY FIE+ ++S A+ ++
Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79
Query: 95 NLFDLGGQYLRVG 107
N + LG ++L+ G
Sbjct: 80 NGYQLGSRFLKCG 92
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL---QQGSSPHRHKGYGFIEYETKQASN 88
+ IYV +I D+T+ED + +FE G I + QG S +G+GF+ Y +A+
Sbjct: 228 FTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKS----RGFGFVNYIRHEAAA 283
Query: 89 EAISSMNLFDLGGQYLRVGRA 109
A+ +N + GQ L VGRA
Sbjct: 284 VAVDHLNDIEFKGQKLYVGRA 304
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ ++ + + + F AFG I CK+ Q + KGYGF+ YET +A+N AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHV 196
Query: 95 NLFDLGGQYLRVGRAI 110
N L + + VG I
Sbjct: 197 NGMLLNEKKVFVGHHI 212
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 41/87 (47%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV + P +TE + +F + G + ++ + + R GY ++ Y + + +A+ +
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKG 121
N + G+ R+ + P + +G
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQG 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,024,289
Number of Sequences: 539616
Number of extensions: 2340188
Number of successful extensions: 11712
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 10295
Number of HSP's gapped (non-prelim): 1382
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)