Query psy2141
Match_columns 173
No_of_seqs 183 out of 1802
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 17:05:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0124|consensus 99.9 4.2E-26 9.2E-31 179.3 11.2 155 1-159 179-334 (544)
2 TIGR01645 half-pint poly-U bin 99.9 2E-25 4.3E-30 189.5 14.1 147 2-152 174-320 (612)
3 PLN03134 glycine-rich RNA-bind 99.9 3.4E-20 7.3E-25 132.7 13.9 87 29-115 31-117 (144)
4 KOG0148|consensus 99.8 1.3E-19 2.8E-24 137.7 10.9 110 1-116 128-242 (321)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 8.2E-19 1.8E-23 142.1 11.5 82 32-113 269-350 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2E-18 4.4E-23 139.8 11.6 84 31-114 2-85 (352)
7 TIGR01659 sex-lethal sex-letha 99.8 6.8E-18 1.5E-22 136.4 12.0 101 2-113 174-276 (346)
8 KOG0121|consensus 99.8 2.8E-18 6E-23 117.3 7.6 87 25-111 29-115 (153)
9 TIGR01659 sex-lethal sex-letha 99.8 5E-18 1.1E-22 137.2 10.4 85 28-112 103-187 (346)
10 PF00076 RRM_1: RNA recognitio 99.7 1.4E-17 3E-22 104.2 8.9 70 35-105 1-70 (70)
11 KOG0122|consensus 99.7 1.6E-17 3.4E-22 124.8 10.5 85 28-112 185-269 (270)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.7 5.2E-17 1.1E-21 137.5 12.6 83 30-112 293-375 (509)
13 KOG0149|consensus 99.7 4.6E-17 9.9E-22 121.8 8.2 80 31-111 11-90 (247)
14 TIGR01645 half-pint poly-U bin 99.7 1E-16 2.2E-21 136.6 10.8 82 30-111 105-186 (612)
15 TIGR01622 SF-CC1 splicing fact 99.7 1.7E-16 3.7E-21 132.8 11.8 110 2-111 155-265 (457)
16 KOG0125|consensus 99.7 1.3E-16 2.8E-21 124.3 9.2 81 30-112 94-174 (376)
17 PF14259 RRM_6: RNA recognitio 99.7 3.6E-16 7.8E-21 98.2 9.5 70 35-105 1-70 (70)
18 KOG0113|consensus 99.7 1.8E-16 4E-21 122.1 9.3 83 30-112 99-181 (335)
19 TIGR01628 PABP-1234 polyadenyl 99.7 3.2E-16 6.9E-21 134.4 10.6 108 4-112 250-364 (562)
20 PLN03120 nucleic acid binding 99.7 1.2E-15 2.7E-20 117.2 10.7 77 32-112 4-80 (260)
21 KOG0107|consensus 99.6 6.9E-16 1.5E-20 110.8 8.0 80 31-115 9-88 (195)
22 KOG0148|consensus 99.6 4.4E-16 9.4E-21 118.7 7.4 86 31-116 61-146 (321)
23 PLN03213 repressor of silencin 99.6 7E-16 1.5E-20 126.1 9.0 80 29-112 7-88 (759)
24 TIGR01628 PABP-1234 polyadenyl 99.6 1.7E-15 3.6E-20 130.0 10.9 79 34-112 2-80 (562)
25 KOG0126|consensus 99.6 5.2E-17 1.1E-21 117.2 1.2 82 30-111 33-114 (219)
26 KOG4207|consensus 99.6 5.4E-16 1.2E-20 114.1 6.3 82 29-110 10-91 (256)
27 KOG0111|consensus 99.6 2.8E-16 6.2E-21 116.7 4.5 84 30-113 8-91 (298)
28 TIGR01648 hnRNP-R-Q heterogene 99.6 3.3E-15 7.2E-20 127.1 11.2 99 2-114 209-309 (578)
29 KOG0145|consensus 99.6 1.9E-15 4.2E-20 114.8 8.4 89 30-118 39-127 (360)
30 TIGR01622 SF-CC1 splicing fact 99.6 4.1E-15 9E-20 124.5 10.7 84 28-112 85-168 (457)
31 KOG0108|consensus 99.6 2E-15 4.4E-20 124.2 8.2 82 33-114 19-100 (435)
32 KOG0131|consensus 99.6 1E-15 2.2E-20 110.6 5.6 81 30-110 7-87 (203)
33 KOG0144|consensus 99.6 1E-15 2.2E-20 123.0 5.8 85 30-115 122-209 (510)
34 smart00362 RRM_2 RNA recogniti 99.6 1.2E-14 2.6E-19 90.2 9.4 72 34-107 1-72 (72)
35 TIGR01648 hnRNP-R-Q heterogene 99.6 8.2E-15 1.8E-19 124.8 9.4 79 31-110 57-136 (578)
36 KOG0130|consensus 99.6 1.3E-14 2.8E-19 100.3 7.9 81 34-114 74-154 (170)
37 KOG0114|consensus 99.6 2.4E-14 5.1E-19 94.7 8.8 78 31-111 17-94 (124)
38 KOG0117|consensus 99.6 2.2E-14 4.7E-19 115.9 10.1 83 30-112 81-164 (506)
39 smart00360 RRM RNA recognition 99.6 2.7E-14 6E-19 88.2 8.5 71 37-107 1-71 (71)
40 COG0724 RNA-binding proteins ( 99.6 2.5E-14 5.4E-19 110.1 10.1 79 32-110 115-193 (306)
41 KOG0144|consensus 99.6 1.4E-14 3E-19 116.6 8.3 86 30-115 32-120 (510)
42 KOG0131|consensus 99.6 9.4E-15 2E-19 105.6 6.4 102 2-113 76-178 (203)
43 PLN03121 nucleic acid binding 99.5 5E-14 1.1E-18 106.9 10.3 76 31-110 4-79 (243)
44 KOG0146|consensus 99.5 8.5E-15 1.8E-19 111.7 6.0 98 18-115 271-368 (371)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4.4E-14 9.5E-19 119.3 10.7 78 30-112 273-351 (481)
46 KOG0117|consensus 99.5 2.4E-14 5.1E-19 115.7 8.5 101 2-116 235-335 (506)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 5.3E-14 1.2E-18 118.7 10.4 107 2-112 65-174 (481)
48 KOG0124|consensus 99.5 1.1E-14 2.3E-19 115.4 4.5 79 32-110 113-191 (544)
49 cd00590 RRM RRM (RNA recogniti 99.5 2.8E-13 6.1E-18 84.3 9.9 74 34-108 1-74 (74)
50 KOG0127|consensus 99.5 1.6E-13 3.5E-18 113.3 10.2 82 32-114 117-198 (678)
51 KOG0145|consensus 99.5 2.7E-13 5.8E-18 103.2 9.6 81 32-112 278-358 (360)
52 KOG0105|consensus 99.5 1.2E-13 2.7E-18 100.2 6.7 80 30-112 4-83 (241)
53 KOG0147|consensus 99.5 6.5E-14 1.4E-18 115.6 5.8 81 30-110 276-356 (549)
54 KOG0123|consensus 99.4 5.1E-13 1.1E-17 108.8 9.1 97 1-116 61-157 (369)
55 smart00361 RRM_1 RNA recogniti 99.4 8.9E-13 1.9E-17 83.0 7.9 61 46-106 2-69 (70)
56 PF13893 RRM_5: RNA recognitio 99.4 1.5E-12 3.3E-17 78.3 8.3 56 49-109 1-56 (56)
57 KOG0109|consensus 99.4 5.4E-13 1.2E-17 102.8 7.5 76 33-116 3-78 (346)
58 KOG4206|consensus 99.4 1.6E-12 3.5E-17 97.0 7.9 86 30-118 7-96 (221)
59 KOG0127|consensus 99.4 1.7E-12 3.7E-17 107.4 8.6 82 32-113 292-379 (678)
60 KOG0109|consensus 99.4 1.3E-12 2.7E-17 100.8 6.3 90 2-112 61-150 (346)
61 KOG0146|consensus 99.3 1.8E-12 4E-17 99.0 6.3 84 31-115 18-104 (371)
62 KOG0415|consensus 99.3 2.5E-12 5.4E-17 101.6 5.9 82 30-111 237-318 (479)
63 KOG4212|consensus 99.3 5.4E-12 1.2E-16 102.1 7.7 81 30-111 42-123 (608)
64 KOG4208|consensus 99.3 9.7E-12 2.1E-16 91.7 7.7 83 30-112 47-130 (214)
65 KOG0110|consensus 99.3 4.2E-12 9.1E-17 107.7 4.5 109 2-112 585-693 (725)
66 TIGR01642 U2AF_lg U2 snRNP aux 99.3 3.6E-11 7.7E-16 102.0 10.2 81 30-110 407-500 (509)
67 KOG4205|consensus 99.2 3.3E-11 7.1E-16 95.7 6.9 109 2-116 72-180 (311)
68 KOG0132|consensus 99.2 4.5E-11 9.8E-16 102.4 7.7 76 32-113 421-496 (894)
69 KOG4205|consensus 99.2 2.4E-11 5.2E-16 96.5 5.1 86 31-117 5-90 (311)
70 KOG4661|consensus 99.2 1.1E-10 2.3E-15 97.5 8.7 86 30-115 403-488 (940)
71 KOG0153|consensus 99.2 1.2E-10 2.6E-15 91.9 7.7 76 30-111 226-302 (377)
72 KOG4212|consensus 99.1 2.5E-10 5.5E-15 92.6 6.9 76 29-109 533-608 (608)
73 KOG0110|consensus 99.1 6E-10 1.3E-14 94.8 8.9 81 31-111 514-597 (725)
74 KOG0123|consensus 99.0 9.8E-10 2.1E-14 89.7 8.3 77 33-115 2-78 (369)
75 KOG0533|consensus 99.0 1.5E-09 3.3E-14 83.3 8.6 84 30-114 81-164 (243)
76 KOG0151|consensus 99.0 2.5E-09 5.4E-14 91.2 8.7 82 31-112 173-257 (877)
77 KOG0226|consensus 98.9 1.1E-09 2.5E-14 83.2 5.1 83 27-109 185-267 (290)
78 KOG0120|consensus 98.9 1.4E-09 3.1E-14 90.8 5.3 112 2-113 247-370 (500)
79 KOG0116|consensus 98.9 3.6E-09 7.7E-14 87.2 7.3 86 29-115 285-370 (419)
80 KOG4209|consensus 98.9 6.5E-09 1.4E-13 79.7 7.8 85 27-112 96-180 (231)
81 KOG1457|consensus 98.9 2.1E-08 4.6E-13 75.2 10.1 88 28-115 30-121 (284)
82 KOG1548|consensus 98.9 8.7E-09 1.9E-13 81.5 7.6 82 30-112 132-221 (382)
83 KOG4660|consensus 98.8 1.9E-09 4E-14 89.7 3.5 72 29-105 72-143 (549)
84 KOG0106|consensus 98.8 6.3E-09 1.4E-13 78.4 5.4 72 33-112 2-73 (216)
85 PF04059 RRM_2: RNA recognitio 98.8 7.5E-08 1.6E-12 64.0 8.5 79 33-111 2-86 (97)
86 KOG4454|consensus 98.7 5.3E-09 1.2E-13 78.1 1.9 78 31-110 8-85 (267)
87 KOG0147|consensus 98.6 1.8E-08 3.9E-13 83.8 1.9 88 22-110 169-256 (549)
88 KOG1190|consensus 98.6 5.1E-07 1.1E-11 73.1 9.4 76 32-112 297-373 (492)
89 PF11608 Limkain-b1: Limkain b 98.4 1.2E-06 2.7E-11 56.1 6.7 69 33-111 3-76 (90)
90 KOG4211|consensus 98.4 1.5E-06 3.3E-11 71.7 9.0 80 30-113 8-87 (510)
91 KOG4211|consensus 98.4 9.5E-07 2.1E-11 72.9 7.6 107 1-110 72-180 (510)
92 KOG1456|consensus 98.3 1.2E-06 2.6E-11 70.3 6.4 128 30-166 285-413 (494)
93 KOG1457|consensus 98.3 7.8E-07 1.7E-11 66.9 3.8 66 30-99 208-273 (284)
94 KOG4849|consensus 98.2 1.1E-06 2.3E-11 70.1 3.8 73 32-104 80-154 (498)
95 KOG4206|consensus 98.2 9.5E-06 2.1E-10 61.1 7.3 77 29-110 143-220 (221)
96 KOG4210|consensus 98.1 2.9E-06 6.3E-11 67.2 3.3 88 30-118 182-270 (285)
97 KOG1995|consensus 98.1 4.1E-06 8.9E-11 66.8 3.8 84 30-113 64-155 (351)
98 KOG0106|consensus 97.9 1.3E-05 2.9E-10 60.5 3.9 73 29-109 96-168 (216)
99 KOG3152|consensus 97.8 1.8E-05 3.8E-10 60.7 3.4 73 31-103 73-157 (278)
100 PF08777 RRM_3: RNA binding mo 97.8 5.6E-05 1.2E-09 51.1 5.5 58 33-96 2-59 (105)
101 COG5175 MOT2 Transcriptional r 97.8 7.2E-05 1.6E-09 59.6 6.3 79 33-111 115-202 (480)
102 KOG1855|consensus 97.7 2.9E-05 6.3E-10 63.4 3.5 72 25-96 224-308 (484)
103 KOG2314|consensus 97.7 0.00027 5.9E-09 59.7 8.5 77 32-109 58-141 (698)
104 KOG0120|consensus 97.7 0.00022 4.7E-09 60.2 7.8 64 48-111 425-491 (500)
105 KOG4307|consensus 97.6 0.00029 6.2E-09 61.0 7.6 76 32-108 867-943 (944)
106 KOG1190|consensus 97.6 0.00026 5.7E-09 57.7 6.8 78 30-111 412-490 (492)
107 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00076 1.7E-08 45.1 7.5 78 31-110 5-90 (100)
108 KOG0129|consensus 97.4 0.00055 1.2E-08 57.3 6.9 69 25-93 363-432 (520)
109 KOG1548|consensus 97.3 0.00099 2.1E-08 53.3 7.4 77 30-110 263-350 (382)
110 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.0014 3E-08 38.7 5.2 52 33-91 2-53 (53)
111 KOG0105|consensus 97.2 0.0056 1.2E-07 45.2 9.2 63 30-99 113-175 (241)
112 PF08952 DUF1866: Domain of un 97.1 0.0045 9.8E-08 44.0 8.2 77 26-111 21-106 (146)
113 KOG1456|consensus 97.1 0.0027 5.9E-08 51.5 7.7 77 31-112 119-199 (494)
114 KOG0112|consensus 97.0 0.00079 1.7E-08 59.7 4.2 78 29-112 452-531 (975)
115 KOG1365|consensus 96.9 0.00098 2.1E-08 54.1 3.9 80 29-109 277-359 (508)
116 KOG0128|consensus 96.9 0.00063 1.4E-08 60.0 2.9 79 32-111 736-814 (881)
117 KOG0129|consensus 96.9 0.0027 5.9E-08 53.3 6.3 62 31-93 258-325 (520)
118 KOG1996|consensus 96.9 0.0038 8.2E-08 49.1 6.7 65 46-110 300-365 (378)
119 KOG0128|consensus 96.8 5.1E-05 1.1E-09 66.6 -4.4 72 31-102 666-737 (881)
120 KOG2193|consensus 96.6 0.0017 3.6E-08 53.4 2.9 77 33-115 2-79 (584)
121 KOG0112|consensus 96.6 0.00055 1.2E-08 60.7 0.1 82 27-109 367-448 (975)
122 KOG2416|consensus 96.5 0.003 6.5E-08 53.9 3.7 75 30-110 442-520 (718)
123 KOG2202|consensus 96.5 0.0016 3.4E-08 50.2 1.8 63 48-111 84-147 (260)
124 KOG1365|consensus 96.4 0.021 4.5E-07 46.6 7.9 73 32-106 161-237 (508)
125 PF07576 BRAP2: BRCA1-associat 96.1 0.056 1.2E-06 36.8 7.9 69 31-101 12-81 (110)
126 KOG4307|consensus 96.0 0.0084 1.8E-07 52.3 4.2 78 31-109 433-511 (944)
127 PF10309 DUF2414: Protein of u 96.0 0.063 1.4E-06 32.6 6.7 55 32-94 5-62 (62)
128 PF15023 DUF4523: Protein of u 95.9 0.04 8.7E-07 39.1 6.5 73 29-109 83-159 (166)
129 KOG2068|consensus 95.9 0.0031 6.8E-08 50.3 1.1 79 33-112 78-163 (327)
130 KOG0115|consensus 95.9 0.01 2.2E-07 45.8 3.6 62 33-95 32-93 (275)
131 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.022 4.8E-07 42.0 4.8 81 30-110 5-96 (176)
132 PF04847 Calcipressin: Calcipr 95.5 0.064 1.4E-06 39.9 6.7 62 45-112 8-71 (184)
133 KOG4676|consensus 95.5 0.029 6.2E-07 45.9 5.1 76 32-108 7-85 (479)
134 KOG2253|consensus 94.6 0.02 4.3E-07 49.6 1.8 74 27-109 35-108 (668)
135 KOG4660|consensus 94.6 0.069 1.5E-06 45.5 5.0 86 26-111 382-472 (549)
136 KOG4285|consensus 94.2 0.3 6.4E-06 38.9 7.4 71 32-110 197-268 (350)
137 PF08675 RNA_bind: RNA binding 94.2 0.25 5.5E-06 31.8 5.8 56 32-96 9-64 (87)
138 KOG2591|consensus 93.8 0.14 3.1E-06 43.8 5.3 70 30-106 173-246 (684)
139 KOG4574|consensus 93.6 0.05 1.1E-06 48.5 2.5 75 34-114 300-376 (1007)
140 KOG2135|consensus 93.2 0.068 1.5E-06 44.8 2.5 76 31-113 371-447 (526)
141 PF03880 DbpA: DbpA RNA bindin 92.9 0.65 1.4E-05 29.0 6.2 59 42-109 11-74 (74)
142 PF11767 SET_assoc: Histone ly 92.1 1.4 3.1E-05 27.0 6.8 55 43-106 11-65 (66)
143 KOG4210|consensus 91.2 0.13 2.7E-06 41.0 1.7 80 31-110 87-166 (285)
144 KOG0804|consensus 90.3 1.2 2.7E-05 37.3 6.7 68 32-101 74-142 (493)
145 COG0724 RNA-binding proteins ( 89.9 0.55 1.2E-05 35.4 4.3 91 1-91 181-284 (306)
146 KOG4454|consensus 86.7 0.5 1.1E-05 36.0 2.1 76 32-108 80-159 (267)
147 KOG4410|consensus 85.8 2.4 5.2E-05 33.7 5.5 50 30-84 328-377 (396)
148 smart00596 PRE_C2HC PRE_C2HC d 82.2 3.6 7.7E-05 25.5 4.1 63 47-112 2-65 (69)
149 PF07530 PRE_C2HC: Associated 81.4 4.9 0.00011 24.8 4.6 63 47-112 2-65 (68)
150 KOG4676|consensus 81.3 0.53 1.2E-05 38.8 0.3 66 32-102 151-216 (479)
151 KOG2318|consensus 80.0 9.3 0.0002 33.3 7.1 79 30-108 172-302 (650)
152 KOG2193|consensus 76.5 0.094 2E-06 43.5 -5.3 77 31-110 79-155 (584)
153 KOG4483|consensus 72.4 11 0.00023 31.5 5.4 58 29-93 388-446 (528)
154 KOG2891|consensus 72.1 5 0.00011 31.9 3.3 69 31-99 148-247 (445)
155 PF10567 Nab6_mRNP_bdg: RNA-re 66.9 10 0.00022 30.3 4.0 83 28-110 11-106 (309)
156 PF15513 DUF4651: Domain of un 63.1 22 0.00049 21.5 4.2 19 47-65 9-27 (62)
157 PF03468 XS: XS domain; Inter 60.9 8.7 0.00019 26.3 2.4 38 44-84 29-66 (116)
158 KOG4019|consensus 58.3 11 0.00024 28.0 2.7 74 32-111 10-89 (193)
159 PF02714 DUF221: Domain of unk 46.7 26 0.00057 27.9 3.5 37 77-115 1-37 (325)
160 PF09707 Cas_Cas2CT1978: CRISP 44.9 51 0.0011 21.3 4.0 49 31-82 24-72 (86)
161 PF07292 NID: Nmi/IFP 35 domai 43.5 15 0.00033 23.9 1.4 25 30-54 50-74 (88)
162 COG5193 LHP1 La protein, small 39.9 15 0.00032 30.7 1.0 61 31-91 173-243 (438)
163 KOG4008|consensus 38.4 28 0.00061 27.0 2.3 33 30-62 38-70 (261)
164 PRK11558 putative ssRNA endonu 38.4 59 0.0013 21.6 3.5 50 31-83 26-75 (97)
165 KOG4365|consensus 33.4 7.8 0.00017 32.7 -1.5 75 35-110 6-80 (572)
166 PF11411 DNA_ligase_IV: DNA li 32.7 35 0.00076 18.3 1.5 15 43-57 20-34 (36)
167 KOG0156|consensus 31.8 1E+02 0.0022 26.6 4.9 59 36-104 36-97 (489)
168 KOG2295|consensus 30.8 5.9 0.00013 34.3 -2.6 74 30-103 229-302 (648)
169 KOG4213|consensus 29.0 76 0.0017 23.7 3.1 59 30-93 109-169 (205)
170 COG0030 KsgA Dimethyladenosine 28.3 58 0.0013 25.6 2.7 33 32-64 95-127 (259)
171 PF08442 ATP-grasp_2: ATP-gras 25.9 1.7E+02 0.0038 22.0 4.8 54 44-100 25-81 (202)
172 PF00398 RrnaAD: Ribosomal RNA 24.9 65 0.0014 25.0 2.4 24 31-54 96-119 (262)
173 TIGR01873 cas_CT1978 CRISPR-as 24.9 1.1E+02 0.0023 19.9 3.0 50 31-83 24-74 (87)
174 PF11823 DUF3343: Protein of u 24.3 1E+02 0.0022 18.8 2.8 28 75-102 2-29 (73)
175 PF03439 Spt5-NGN: Early trans 23.4 1.4E+02 0.0031 18.8 3.4 24 73-96 43-66 (84)
176 COG0150 PurM Phosphoribosylami 23.0 32 0.0007 28.1 0.4 48 46-97 275-322 (345)
177 PF15407 Spo7_2_N: Sporulation 21.7 32 0.00069 21.2 0.1 23 30-52 25-47 (67)
178 KOG1295|consensus 20.8 1.3E+02 0.0028 25.1 3.3 70 31-100 6-78 (376)
179 PF10281 Ish1: Putative stress 20.5 99 0.0021 16.3 1.9 17 43-59 3-19 (38)
No 1
>KOG0124|consensus
Probab=99.93 E-value=4.2e-26 Score=179.35 Aligned_cols=155 Identities=61% Similarity=0.933 Sum_probs=145.3
Q ss_pred CCCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEE
Q psy2141 1 MQHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIE 80 (173)
Q Consensus 1 ~l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~ 80 (173)
||+||.|+|+||++.|++++++|+++++.+...+|||..+.++.+|+||+..|+.||+|..|++.++...+.+|||+|++
T Consensus 179 mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiE 258 (544)
T KOG0124|consen 179 MLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIE 258 (544)
T ss_pred cccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred EcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhhcccc-hhhhhhhh
Q psy2141 81 YETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAMDGGA-TNAVGVLS 159 (173)
Q Consensus 81 f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~aa~a~~~~~~a~~~~~-~~~~~~~~ 159 (173)
|.+..+-..|+..||-+.++|+-|+|..+..++..... |..++.+|++++++++++++++++.++.+ +.++++.+
T Consensus 259 y~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~----Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G 334 (544)
T KOG0124|consen 259 YNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQ----PATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVG 334 (544)
T ss_pred eccccchHHHhhhcchhhcccceEecccccCCCchhcC----CCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccC
Confidence 99999999999999999999999999999988888765 88899999999999999999999998877 44455544
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=2e-25 Score=189.50 Aligned_cols=147 Identities=63% Similarity=0.945 Sum_probs=130.1
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
|+||.|+|+++.+.+...+..+....+....++|||+|||.++++++|+++|+.||.|..+++.+++.+++++|||||+|
T Consensus 174 i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeF 253 (612)
T TIGR01645 174 LGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEY 253 (612)
T ss_pred EecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEE
Confidence 68999999999887776666565555566778999999999999999999999999999999999998999999999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhhcccch
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAMDGGAT 152 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~aa~a~~~~~~a~~~~~~ 152 (173)
.+.++|.+|++.||+..|+|+.|+|.++.+++..... +.....+|++++++++++++++++.+++++
T Consensus 254 e~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~----pa~~~~~p~aaa~Aaaaa~a~~~a~~~~~~ 320 (612)
T TIGR01645 254 NNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQ----PATVSAIPAAAAVAAAAATAKIMAAEAVAG 320 (612)
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCC----CCCCCCCchHHHHHHHHhhhhhhhhhhhhc
Confidence 9999999999999999999999999999987666543 455677899999999999999999987753
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=3.4e-20 Score=132.68 Aligned_cols=87 Identities=23% Similarity=0.479 Sum_probs=81.7
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
....++|||+|||++++|++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..|+|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCC
Q psy2141 109 AITPPNA 115 (173)
Q Consensus 109 a~~~~~~ 115 (173)
+..++..
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9866543
No 4
>KOG0148|consensus
Probab=99.82 E-value=1.3e-19 Score=137.75 Aligned_cols=110 Identities=26% Similarity=0.489 Sum_probs=95.0
Q ss_pred CCCCcccccCCCCCCCC----Ccchhhhhhhh-hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcce
Q psy2141 1 MQHFPHVQVGRPSNMPQ----AQSVIDEITEE-AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKG 75 (173)
Q Consensus 1 ~l~gr~i~v~~~~~~~~----~~~~~~~~~~~-~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g 75 (173)
||++|.||.+|+..+|. .....+++-.. ....++|||||++..++|++|++.|+.||+|.+|++..+ +|
T Consensus 128 WlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qG 201 (321)
T KOG0148|consen 128 WLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QG 201 (321)
T ss_pred eeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cc
Confidence 79999999999887652 22334444433 455889999999999999999999999999999999998 69
Q ss_pred EEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCCC
Q psy2141 76 YGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116 (173)
Q Consensus 76 ~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 116 (173)
|+||.|.+.|.|.+||..+|+.+|+|+.++|.|.+......
T Consensus 202 YaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 202 YAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred eEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 99999999999999999999999999999999998765544
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=8.2e-19 Score=142.09 Aligned_cols=82 Identities=27% Similarity=0.457 Sum_probs=78.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 111 (173)
..+|||+|||+++++++|+++|++||.|..+++++|+.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.|...
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q psy2141 112 PP 113 (173)
Q Consensus 112 ~~ 113 (173)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 54
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=2e-18 Score=139.77 Aligned_cols=84 Identities=26% Similarity=0.506 Sum_probs=79.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
+..+|||+|||.+++|++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|++|++.|||..+.|++|+|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q psy2141 111 TPPN 114 (173)
Q Consensus 111 ~~~~ 114 (173)
+...
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 6543
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=6.8e-18 Score=136.42 Aligned_cols=101 Identities=20% Similarity=0.322 Sum_probs=87.6
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
|.+++|+|.++.. .. +....++|||+|||..++|++|+++|++||.|..++|++++.+++++|||||+|
T Consensus 174 l~gr~i~V~~a~p--~~---------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F 242 (346)
T TIGR01659 174 VRNKRLKVSYARP--GG---------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRF 242 (346)
T ss_pred cCCceeeeecccc--cc---------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEE
Confidence 6788888887642 11 112457899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhcCCceeCC--eEEEEEEeeCCC
Q psy2141 82 ETKQASNEAISSMNLFDLGG--QYLRVGRAITPP 113 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g--~~l~v~~a~~~~ 113 (173)
.+.++|++|++.||+..+.+ ++|+|.++....
T Consensus 243 ~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 243 NKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999999998876 789999987543
No 8
>KOG0121|consensus
Probab=99.76 E-value=2.8e-18 Score=117.28 Aligned_cols=87 Identities=20% Similarity=0.288 Sum_probs=81.5
Q ss_pred hhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q psy2141 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104 (173)
Q Consensus 25 ~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l 104 (173)
..+....+++||||||++.++|++|.++|++.|+|..+.+-.|+.+..++|||||+|.+.++|+.|++.++|..++.++|
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 34455779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeC
Q psy2141 105 RVGRAIT 111 (173)
Q Consensus 105 ~v~~a~~ 111 (173)
+++|...
T Consensus 109 r~D~D~G 115 (153)
T KOG0121|consen 109 RIDWDAG 115 (153)
T ss_pred eeecccc
Confidence 9999754
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=5e-18 Score=137.18 Aligned_cols=85 Identities=21% Similarity=0.436 Sum_probs=80.3
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
+....++|||+|||++++|++|+++|+.||+|++|+|++|+.+++++|||||+|.+.++|++|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCC
Q psy2141 108 RAITP 112 (173)
Q Consensus 108 ~a~~~ 112 (173)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98754
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=1.4e-17 Score=104.17 Aligned_cols=70 Identities=33% Similarity=0.719 Sum_probs=67.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 35 l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|++|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 6889999999999999999999999999999999885
No 11
>KOG0122|consensus
Probab=99.74 E-value=1.6e-17 Score=124.81 Aligned_cols=85 Identities=25% Similarity=0.483 Sum_probs=81.0
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
...+.++|-|.||+.+++|++|+++|.+||.|..+.+.+|+.||.+||||||.|.+.++|.+||+.|||.-++.-.|+|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCC
Q psy2141 108 RAITP 112 (173)
Q Consensus 108 ~a~~~ 112 (173)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.72 E-value=5.2e-17 Score=137.53 Aligned_cols=83 Identities=33% Similarity=0.498 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|++.|+|..++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred eCC
Q psy2141 110 ITP 112 (173)
Q Consensus 110 ~~~ 112 (173)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 754
No 13
>KOG0149|consensus
Probab=99.70 E-value=4.6e-17 Score=121.78 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
..++||||+|+|++..+.|+++|++||.|.+..++.|+.+|++||||||+|.+.+.|++||+. ..-.|+||+..|+.+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 357899999999999999999999999999999999999999999999999999999999976 4578999999998875
Q ss_pred C
Q psy2141 111 T 111 (173)
Q Consensus 111 ~ 111 (173)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=1e-16 Score=136.65 Aligned_cols=82 Identities=38% Similarity=0.692 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||||||+++++++|+++|++||.|.+|++++|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|++.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.70 E-value=1.7e-16 Score=132.78 Aligned_cols=110 Identities=25% Similarity=0.488 Sum_probs=88.1
Q ss_pred CCCcccccCCCCCCCCCcch-hhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSV-IDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIE 80 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~ 80 (173)
+.|++|.|..+......... ...........++|||+|||..+++++|+++|+.||.|..|.+++++.+|+++|||||+
T Consensus 155 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~ 234 (457)
T TIGR01622 155 LLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQ 234 (457)
T ss_pred ECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEE
Confidence 56778887654321111000 01111112336899999999999999999999999999999999998889999999999
Q ss_pred EcCHHHHHHHHHhcCCceeCCeEEEEEEeeC
Q psy2141 81 YETKQASNEAISSMNLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 81 f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 111 (173)
|.+.++|.+|++.|+|..|.|++|+|.++..
T Consensus 235 f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 235 FHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred ECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999999999763
No 16
>KOG0125|consensus
Probab=99.69 E-value=1.3e-16 Score=124.29 Aligned_cols=81 Identities=21% Similarity=0.387 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||.|||+...|.||+.+|.+||+|.+|.|+.+. .-+||||||+|++.++|++|-+.|||..+.||+|.|+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 447899999999999999999999999999999999872 347999999999999999999999999999999999998
Q ss_pred eCC
Q psy2141 110 ITP 112 (173)
Q Consensus 110 ~~~ 112 (173)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 644
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.69 E-value=3.6e-16 Score=98.23 Aligned_cols=70 Identities=27% Similarity=0.693 Sum_probs=65.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 35 l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
|||+|||+.+++++|+++|+.||.|..+.+..++. +..+|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 89999999999999999999999999999999875
No 18
>KOG0113|consensus
Probab=99.68 E-value=1.8e-16 Score=122.09 Aligned_cols=83 Identities=28% Similarity=0.514 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
++.+||||+.|+.+++|.+|+..|+.||+|+.+.|++|+.||+++|||||+|....+...|.+..+|..|+|+.|.|++-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred eCC
Q psy2141 110 ITP 112 (173)
Q Consensus 110 ~~~ 112 (173)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 643
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.67 E-value=3.2e-16 Score=134.41 Aligned_cols=108 Identities=22% Similarity=0.378 Sum_probs=88.4
Q ss_pred CcccccCCCCCCCCCcchhh----hhh---hhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceE
Q psy2141 4 FPHVQVGRPSNMPQAQSVID----EIT---EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY 76 (173)
Q Consensus 4 gr~i~v~~~~~~~~~~~~~~----~~~---~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~ 76 (173)
|+.|.|++.....+...... +.. .......+|||+||+..+++++|+++|+.||.|.+++++.+ .+|.++||
T Consensus 250 g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~ 328 (562)
T TIGR01628 250 GKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGF 328 (562)
T ss_pred ceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCe
Confidence 77777877654332211111 111 11335678999999999999999999999999999999999 68999999
Q ss_pred EEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 77 afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
|||+|.+.++|.+|++.|||..++|++|.|.++..+
T Consensus 329 gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 329 GFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 999999999999999999999999999999998753
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=1.2e-15 Score=117.17 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 111 (173)
.++|||+|||+.++|++|+++|+.||.|.++.|.+++. .+|||||+|.+.++|+.|+ .|+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 5799999999999999999 5999999999999999874
Q ss_pred C
Q psy2141 112 P 112 (173)
Q Consensus 112 ~ 112 (173)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 21
>KOG0107|consensus
Probab=99.64 E-value=6.9e-16 Score=110.81 Aligned_cols=80 Identities=20% Similarity=0.493 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
-.++||||||+..+++.+|+..|..||++..+-|-+. ..|||||+|++..+|+.|+..|+|..|.|..|+|+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4789999999999999999999999999999988775 48999999999999999999999999999999999988
Q ss_pred CCCCC
Q psy2141 111 TPPNA 115 (173)
Q Consensus 111 ~~~~~ 115 (173)
..+..
T Consensus 84 G~~r~ 88 (195)
T KOG0107|consen 84 GRPRG 88 (195)
T ss_pred CCccc
Confidence 66553
No 22
>KOG0148|consensus
Probab=99.64 E-value=4.4e-16 Score=118.68 Aligned_cols=86 Identities=26% Similarity=0.532 Sum_probs=81.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
....+|||-|..+++.++|++.|.+||.|.++++++|..|+++|||+||.|.+.++|++||..|||.-|++|.|+.+|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q psy2141 111 TPPNAL 116 (173)
Q Consensus 111 ~~~~~~ 116 (173)
.++...
T Consensus 141 RKp~e~ 146 (321)
T KOG0148|consen 141 RKPSEM 146 (321)
T ss_pred cCcccc
Confidence 877443
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.64 E-value=7e-16 Score=126.05 Aligned_cols=80 Identities=15% Similarity=0.302 Sum_probs=73.0
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCH--HHHHHHHHhcCCceeCCeEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK--QASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~--~~a~~a~~~l~g~~i~g~~l~v 106 (173)
.....+||||||++.+++++|+..|+.||.|..+.|++ .+| ||||||+|.+. .+..+||..|||..|.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34568999999999999999999999999999999995 466 99999999987 6899999999999999999999
Q ss_pred EEeeCC
Q psy2141 107 GRAITP 112 (173)
Q Consensus 107 ~~a~~~ 112 (173)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 998754
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=1.7e-15 Score=129.97 Aligned_cols=79 Identities=28% Similarity=0.633 Sum_probs=75.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 34 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
+|||||||.+++|++|+++|++||.|.+|++.+|+.+++++|||||+|.+.++|++|++.|++..+.|++|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999989999999999999999999999999999999999999997643
No 25
>KOG0126|consensus
Probab=99.63 E-value=5.2e-17 Score=117.25 Aligned_cols=82 Identities=28% Similarity=0.462 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+..-|||||||+++||.+|...|++||.|..+.+++|+.||+++||||+.|++..+.--|+..|||..|.||.|+|+..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 26
>KOG4207|consensus
Probab=99.63 E-value=5.4e-16 Score=114.14 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=78.6
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
.....+|-|.||.+.++.++|+.+|++||.|-+|.|.+|+.|++++|||||.|....+|+.|++.|+|..|+|+.|+|+.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ee
Q psy2141 109 AI 110 (173)
Q Consensus 109 a~ 110 (173)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 86
No 27
>KOG0111|consensus
Probab=99.62 E-value=2.8e-16 Score=116.66 Aligned_cols=84 Identities=29% Similarity=0.518 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++||||+|..+++|..|...|-+||.|..+++..|-.++++|||+||+|...++|.+||..||+.++.||.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q psy2141 110 ITPP 113 (173)
Q Consensus 110 ~~~~ 113 (173)
+|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=3.3e-15 Score=127.11 Aligned_cols=99 Identities=20% Similarity=0.292 Sum_probs=82.1
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhcc--CceeEEEEccCCCCCCcceEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAF--GPIKYCKLQQGSSPHRHKGYGFI 79 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~--G~v~~~~i~~~~~~g~~~g~afv 79 (173)
+.|+.|+|.|........ .+.....++|||+||+.++++++|+++|++| |.|+.|+++ ++||||
T Consensus 209 l~Gr~I~VdwA~p~~~~d------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFV 274 (578)
T TIGR01648 209 LWGHVIAVDWAEPEEEVD------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFV 274 (578)
T ss_pred ecCceEEEEeeccccccc------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEE
Confidence 568889998875321111 1112346789999999999999999999999 999999775 459999
Q ss_pred EEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCC
Q psy2141 80 EYETKQASNEAISSMNLFDLGGQYLRVGRAITPPN 114 (173)
Q Consensus 80 ~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~ 114 (173)
+|.+.++|++|++.||+.+|+|+.|+|+|+++...
T Consensus 275 eF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 275 HFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred EeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999999999999999999999987543
No 29
>KOG0145|consensus
Probab=99.62 E-value=1.9e-15 Score=114.80 Aligned_cols=89 Identities=22% Similarity=0.496 Sum_probs=83.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
+..+.|.|.-||.++++++|+.+|...|.|++|++++|+-+|++.||+||.|.+.++|++|+..|||..+..+.|+|+|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCC
Q psy2141 110 ITPPNALHS 118 (173)
Q Consensus 110 ~~~~~~~~~ 118 (173)
++.......
T Consensus 119 RPSs~~Ik~ 127 (360)
T KOG0145|consen 119 RPSSDSIKD 127 (360)
T ss_pred cCChhhhcc
Confidence 988776554
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=4.1e-15 Score=124.48 Aligned_cols=84 Identities=15% Similarity=0.259 Sum_probs=78.0
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
...+.++|||+|||..+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|+. |+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 44568899999999999999999999999999999999999999999999999999999999995 89999999999998
Q ss_pred EeeCC
Q psy2141 108 RAITP 112 (173)
Q Consensus 108 ~a~~~ 112 (173)
++...
T Consensus 164 ~~~~~ 168 (457)
T TIGR01622 164 SSQAE 168 (457)
T ss_pred ecchh
Confidence 86543
No 31
>KOG0108|consensus
Probab=99.61 E-value=2e-15 Score=124.25 Aligned_cols=82 Identities=28% Similarity=0.512 Sum_probs=79.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
+.+||||+|++++|++|..+|+..|.|..++++.|+.+|+.+||||++|.+.++++.|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q psy2141 113 PN 114 (173)
Q Consensus 113 ~~ 114 (173)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 32
>KOG0131|consensus
Probab=99.61 E-value=1e-15 Score=110.57 Aligned_cols=81 Identities=27% Similarity=0.534 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
....|||||||+..++++.|.++|-+.|+|..+.+.+|+.++.++||||++|.+.++|+-|++.||...+.|++|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q psy2141 110 I 110 (173)
Q Consensus 110 ~ 110 (173)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 33
>KOG0144|consensus
Probab=99.60 E-value=1e-15 Score=123.01 Aligned_cols=85 Identities=25% Similarity=0.417 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC-ceeCC--eEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL-FDLGG--QYLRV 106 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g-~~i~g--~~l~v 106 (173)
...++||||.|+..++|.+++++|++||.|++|.|++| ..+.+||||||.|.+.+.|..||+.||| ..+.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 44789999999999999999999999999999999999 5899999999999999999999999999 44555 79999
Q ss_pred EEeeCCCCC
Q psy2141 107 GRAITPPNA 115 (173)
Q Consensus 107 ~~a~~~~~~ 115 (173)
+|+.++++.
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999876554
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.60 E-value=1.2e-14 Score=90.20 Aligned_cols=72 Identities=39% Similarity=0.797 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 34 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
+|||+|||..+++++|+++|.+||.+..+.+..++ +.++|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7789999999999999999999999999999998873
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=8.2e-15 Score=124.76 Aligned_cols=79 Identities=27% Similarity=0.504 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEEEe
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG-GQYLRVGRA 109 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~-g~~l~v~~a 109 (173)
..++|||+|||.+++|++|+++|++||.|.+++|++| .+|+++|||||+|.+.++|++|++.||+..+. |+.|.|+++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 79999999999999999999999999998885 777777655
Q ss_pred e
Q psy2141 110 I 110 (173)
Q Consensus 110 ~ 110 (173)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 3
No 36
>KOG0130|consensus
Probab=99.57 E-value=1.3e-14 Score=100.31 Aligned_cols=81 Identities=33% Similarity=0.502 Sum_probs=77.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCC
Q psy2141 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPP 113 (173)
Q Consensus 34 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~ 113 (173)
.|||.++..+.+|+++.+.|..||.|+.+.+..|+.||..+||++|+|.+.++|++|+..|||..+.|++|.|+|+..+.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred C
Q psy2141 114 N 114 (173)
Q Consensus 114 ~ 114 (173)
.
T Consensus 154 p 154 (170)
T KOG0130|consen 154 P 154 (170)
T ss_pred C
Confidence 3
No 37
>KOG0114|consensus
Probab=99.57 E-value=2.4e-14 Score=94.69 Aligned_cols=78 Identities=18% Similarity=0.392 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
-++.|||.|||+.++.++..++|.+||.|..+++-..+. .+|-|||.|++..+|.+|++.|+|..+.++.|.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 468899999999999999999999999999999987654 48999999999999999999999999999999998865
Q ss_pred C
Q psy2141 111 T 111 (173)
Q Consensus 111 ~ 111 (173)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 3
No 38
>KOG0117|consensus
Probab=99.56 E-value=2.2e-14 Score=115.91 Aligned_cols=83 Identities=25% Similarity=0.469 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG-GQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~-g~~l~v~~ 108 (173)
...+.||||.||.++.|++|.-+|++.|+|-+++|++|+.+|.+||||||.|.+.+.|++|++.||+++|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999985 89999987
Q ss_pred eeCC
Q psy2141 109 AITP 112 (173)
Q Consensus 109 a~~~ 112 (173)
+...
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 6543
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.56 E-value=2.7e-14 Score=88.17 Aligned_cols=71 Identities=31% Similarity=0.674 Sum_probs=66.9
Q ss_pred EcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 37 VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 37 V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999987788999999999999999999999999999999998873
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=2.5e-14 Score=110.05 Aligned_cols=79 Identities=33% Similarity=0.677 Sum_probs=76.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
.++|||+|||..+++++|+++|..||.+..+.+..++.+++++|+|||+|.+.+++..|++.+++..+.|++|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5999999999999999999999999999999999998899999999999999999999999999999999999999965
No 41
>KOG0144|consensus
Probab=99.55 E-value=1.4e-14 Score=116.63 Aligned_cols=86 Identities=24% Similarity=0.402 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCce-eCC--eEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFD-LGG--QYLRV 106 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~-i~g--~~l~v 106 (173)
.+.-++|||.||..++|.+|+++|++||.|.+|.|++||.++.++|||||.|.+.++|.+|+.+||+.. +-| ++|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 345689999999999999999999999999999999999999999999999999999999999999844 444 78999
Q ss_pred EEeeCCCCC
Q psy2141 107 GRAITPPNA 115 (173)
Q Consensus 107 ~~a~~~~~~ 115 (173)
+++....++
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 999866555
No 42
>KOG0131|consensus
Probab=99.55 E-value=9.4e-15 Score=105.61 Aligned_cols=102 Identities=25% Similarity=0.379 Sum_probs=89.2
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeE-EEEccCCCCCCcceEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKY-CKLQQGSSPHRHKGYGFIE 80 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~-~~i~~~~~~g~~~g~afv~ 80 (173)
|.||+|+|.+.+.. +...+...+|||+||.++++|..|.+.|+.||.+.. -+++++..||.++||||+.
T Consensus 76 LYgrpIrv~kas~~----------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~ 145 (203)
T KOG0131|consen 76 LYGRPIRVNKASAH----------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFIN 145 (203)
T ss_pred hcCceeEEEecccc----------cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEe
Confidence 67999999987621 112234689999999999999999999999998866 4899999999999999999
Q ss_pred EcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCC
Q psy2141 81 YETKQASNEAISSMNLFDLGGQYLRVGRAITPP 113 (173)
Q Consensus 81 f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~ 113 (173)
|.+.+.+.+|++.|||..+..++|+|.++..+.
T Consensus 146 ~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 146 YASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred chhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 999999999999999999999999999997653
No 43
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=5e-14 Score=106.85 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
...+|||+||++.++|++|+++|+.||.|..|+|+++. ..+++|||+|.+.++++.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999984 44689999999999999999 889999999999997754
No 44
>KOG0146|consensus
Probab=99.54 E-value=8.5e-15 Score=111.70 Aligned_cols=98 Identities=17% Similarity=0.357 Sum_probs=88.7
Q ss_pred CcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCc
Q psy2141 18 AQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLF 97 (173)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~ 97 (173)
-.+.....+.+....|+|||..||.+..+.+|.++|-.||.|.+.++..|+.|.++|+|+||.|.+..+++.||..|||.
T Consensus 271 ~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGF 350 (371)
T KOG0146|consen 271 PPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF 350 (371)
T ss_pred CcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcch
Confidence 34445555667778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeEEEEEEeeCCCCC
Q psy2141 98 DLGGQYLRVGRAITPPNA 115 (173)
Q Consensus 98 ~i~g~~l~v~~a~~~~~~ 115 (173)
.|+-++|+|...+++...
T Consensus 351 QIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 351 QIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred hhhhhhhhhhhcCccccC
Confidence 999999999998876543
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.54 E-value=4.4e-14 Score=119.25 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHP-DLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~-~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
.+.++|||+|||+ .+++++|+++|+.||.|..|++++++ +|+|||+|.+.++|+.|++.|||..|.|++|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3578999999998 69999999999999999999999874 79999999999999999999999999999999999
Q ss_pred eeCC
Q psy2141 109 AITP 112 (173)
Q Consensus 109 a~~~ 112 (173)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 46
>KOG0117|consensus
Probab=99.54 E-value=2.4e-14 Score=115.68 Aligned_cols=101 Identities=20% Similarity=0.328 Sum_probs=83.7
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
|.|-.|.|.|+. |...+. .+....-+.|||.||+.++||+.|+++|+.||.|+.|+.++| ||||.|
T Consensus 235 lwgn~~tVdWAe--p~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf 300 (506)
T KOG0117|consen 235 LWGNAITVDWAE--PEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHF 300 (506)
T ss_pred ecCCcceeeccC--cccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEee
Confidence 446677788876 333322 222345678999999999999999999999999999988765 999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCCC
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 116 (173)
.+.++|-+|++.|||++|+|..|.|..|++..+..
T Consensus 301 ~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 301 AEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred cchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 99999999999999999999999999999764443
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.53 E-value=5.3e-14 Score=118.73 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=81.1
Q ss_pred CCCcccccCCCCCCCCCcchhhh-hhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDE-ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIE 80 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~ 80 (173)
|+|++|+|.++....-....... .........+|||+||++.+++++|+++|+.||.|.++.+.+++ .+++|||+
T Consensus 65 l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVe 140 (481)
T TIGR01649 65 IRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVE 140 (481)
T ss_pred EcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEE
Confidence 78999999886521100000000 00111223479999999999999999999999999999998764 24789999
Q ss_pred EcCHHHHHHHHHhcCCceeCC--eEEEEEEeeCC
Q psy2141 81 YETKQASNEAISSMNLFDLGG--QYLRVGRAITP 112 (173)
Q Consensus 81 f~~~~~a~~a~~~l~g~~i~g--~~l~v~~a~~~ 112 (173)
|.+.++|.+|++.|||..|.+ ..|+|.|++..
T Consensus 141 f~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 141 FESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred ECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 999999999999999999965 58999998753
No 48
>KOG0124|consensus
Probab=99.51 E-value=1.1e-14 Score=115.38 Aligned_cols=79 Identities=39% Similarity=0.706 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
.|+||||.|.+++.|+.|+..|..||+|+++.+-||+.|+++|||+||+|+-.+.|+-|++.|||..++||.|+|.+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998543
No 49
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.51 E-value=2.8e-13 Score=84.33 Aligned_cols=74 Identities=31% Similarity=0.706 Sum_probs=68.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 34 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987544 7789999999999999999999999999999998864
No 50
>KOG0127|consensus
Probab=99.50 E-value=1.6e-13 Score=113.31 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 111 (173)
.-+|.|.|||+.+.+.+|+.+|+.||.|.++.|++.+ .|+.+|||||.|....+|..|++.+|+.+|+||+|.|+||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5689999999999999999999999999999999775 677779999999999999999999999999999999999987
Q ss_pred CCC
Q psy2141 112 PPN 114 (173)
Q Consensus 112 ~~~ 114 (173)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 643
No 51
>KOG0145|consensus
Probab=99.48 E-value=2.7e-13 Score=103.25 Aligned_cols=81 Identities=26% Similarity=0.441 Sum_probs=76.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 111 (173)
.-.|||.||.++..|..|+++|.+||.|..+++++|..+.+.|||+||.+.+.++|..||..|||..++++.|-|.+...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C
Q psy2141 112 P 112 (173)
Q Consensus 112 ~ 112 (173)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 3
No 52
>KOG0105|consensus
Probab=99.47 E-value=1.2e-13 Score=100.23 Aligned_cols=80 Identities=26% Similarity=0.461 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||||||.++.|.+|+++|.+||.|.++.+... .....||||+|++..+|+.||..-+|..++|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 46799999999999999999999999999999988544 234689999999999999999999999999999999998
Q ss_pred eCC
Q psy2141 110 ITP 112 (173)
Q Consensus 110 ~~~ 112 (173)
...
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 754
No 53
>KOG0147|consensus
Probab=99.47 E-value=6.5e-14 Score=115.60 Aligned_cols=81 Identities=32% Similarity=0.668 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+...||||||.++++|++|+.+|++||.|+.+.+.+|..+|+++||+|++|.+.++|.+|++.|||.+|.|+.|+|..-
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 45556999999999999999999999999999999999889999999999999999999999999999999999998765
Q ss_pred e
Q psy2141 110 I 110 (173)
Q Consensus 110 ~ 110 (173)
.
T Consensus 356 ~ 356 (549)
T KOG0147|consen 356 T 356 (549)
T ss_pred e
Confidence 4
No 54
>KOG0123|consensus
Probab=99.44 E-value=5.1e-13 Score=108.84 Aligned_cols=97 Identities=19% Similarity=0.372 Sum_probs=85.3
Q ss_pred CCCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEE
Q psy2141 1 MQHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIE 80 (173)
Q Consensus 1 ~l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~ 80 (173)
.+.|++|++-|... +...|||.||+.+++..+|.++|+.||.|.+|++..+. .| ++|| ||+
T Consensus 61 ~~~~~~~rim~s~r----------------d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~ 121 (369)
T KOG0123|consen 61 VLKGKPIRIMWSQR----------------DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQ 121 (369)
T ss_pred ccCCcEEEeehhcc----------------CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEE
Confidence 47899999988763 22229999999999999999999999999999999995 55 9999 999
Q ss_pred EcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCCC
Q psy2141 81 YETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116 (173)
Q Consensus 81 f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 116 (173)
|.+.+.|.+|++.|||..+.|++|.|.....+....
T Consensus 122 f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 122 FESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 999999999999999999999999998877655443
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.43 E-value=8.9e-13 Score=82.97 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=55.4
Q ss_pred HHHHHHHhh----ccCceeEEE-EccCCCC--CCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 46 EEDIKSVFE----AFGPIKYCK-LQQGSSP--HRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 46 e~~L~~~F~----~~G~v~~~~-i~~~~~~--g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
+++|+++|+ +||.|.++. +..++.+ +.++|++||+|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777666 899999999999999999999999999999999976
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.5e-12 Score=78.27 Aligned_cols=56 Identities=27% Similarity=0.552 Sum_probs=51.1
Q ss_pred HHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 49 IKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 49 L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
|+++|++||.|..+.+..++ +++|||+|.+.++|..|++.|||..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997763 689999999999999999999999999999999986
No 57
>KOG0109|consensus
Probab=99.42 E-value=5.4e-13 Score=102.83 Aligned_cols=76 Identities=25% Similarity=0.583 Sum_probs=70.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
.+|||||||.++++.+|+.+|++||+|.+|.|+++ ||||..++...++.+|+.|||..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999854 9999999999999999999999999999999999877
Q ss_pred CCCC
Q psy2141 113 PNAL 116 (173)
Q Consensus 113 ~~~~ 116 (173)
....
T Consensus 75 sk~s 78 (346)
T KOG0109|consen 75 SKAS 78 (346)
T ss_pred CCCc
Confidence 4443
No 58
>KOG4206|consensus
Probab=99.38 E-value=1.6e-12 Score=97.04 Aligned_cols=86 Identities=16% Similarity=0.408 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKS----VFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~----~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
.+..||||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|..|++.|+|..+.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4556999999999999999888 999999999987754 578899999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCC
Q psy2141 106 VGRAITPPNALHS 118 (173)
Q Consensus 106 v~~a~~~~~~~~~ 118 (173)
+.||+.+.+....
T Consensus 84 iqyA~s~sdii~~ 96 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQ 96 (221)
T ss_pred eecccCccchhhc
Confidence 9999977665444
No 59
>KOG0127|consensus
Probab=99.38 E-value=1.7e-12 Score=107.36 Aligned_cols=82 Identities=28% Similarity=0.485 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhc-----CC-ceeCCeEEE
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM-----NL-FDLGGQYLR 105 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l-----~g-~~i~g~~l~ 105 (173)
..+|||.|||++++|++|.+.|++||.|..+.|+.++.|+.++|.|||.|.+...+..||..- .| ..++||.|+
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 579999999999999999999999999999999999999999999999999999999999876 23 678999999
Q ss_pred EEEeeCCC
Q psy2141 106 VGRAITPP 113 (173)
Q Consensus 106 v~~a~~~~ 113 (173)
|..+.++.
T Consensus 372 v~~Av~Rk 379 (678)
T KOG0127|consen 372 VTLAVTRK 379 (678)
T ss_pred eeeccchH
Confidence 99987653
No 60
>KOG0109|consensus
Probab=99.36 E-value=1.3e-12 Score=100.83 Aligned_cols=90 Identities=21% Similarity=0.484 Sum_probs=80.0
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
|+|..|.|..+.+. .+...+|+||||.+.++.++|+..|++||+|.+|+|++| |+||.|
T Consensus 61 Lhg~nInVeaSksK-------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~ 119 (346)
T KOG0109|consen 61 LHGVNINVEASKSK-------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHF 119 (346)
T ss_pred ecceEEEEEecccc-------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEE
Confidence 67788888776542 246789999999999999999999999999999999865 999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
.-.++|..|++.|++.++.|++++|..+..+
T Consensus 120 d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 120 DRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred eeccchHHHHhcccccccccceeeeeeeccc
Confidence 9999999999999999999999999887644
No 61
>KOG0146|consensus
Probab=99.35 E-value=1.8e-12 Score=99.04 Aligned_cols=84 Identities=23% Similarity=0.458 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCce-eCC--eEEEEE
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFD-LGG--QYLRVG 107 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~-i~g--~~l~v~ 107 (173)
.+++||||.|...-.|+|++.+|..||.+.+|.+++.. .|.+|||+||.|.+..+|+.||..|||.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999984 89999999999999999999999999933 434 688999
Q ss_pred EeeCCCCC
Q psy2141 108 RAITPPNA 115 (173)
Q Consensus 108 ~a~~~~~~ 115 (173)
++...+++
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 99876554
No 62
>KOG0415|consensus
Probab=99.32 E-value=2.5e-12 Score=101.62 Aligned_cols=82 Identities=24% Similarity=0.448 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
+|...|||..|.+-+++++|.-+|+.||+|..|.+++|+.||.+..||||+|.+.+++++|.-.|++..|++++|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 64
No 63
>KOG4212|consensus
Probab=99.32 E-value=5.4e-12 Score=102.13 Aligned_cols=81 Identities=17% Similarity=0.390 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-ccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFE-AFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~-~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..++.+||.|||+++.+.+|+++|. +.|.|+.|.++.| .+|++||||.|+|+++|.+++|++.||.+++.||+|+|+-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 4567899999999999999999995 6799999999999 5999999999999999999999999999999999999987
Q ss_pred eeC
Q psy2141 109 AIT 111 (173)
Q Consensus 109 a~~ 111 (173)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 544
No 64
>KOG4208|consensus
Probab=99.30 E-value=9.7e-12 Score=91.71 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-CceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAF-GPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~-G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
....-+|++.+|..+.+.++..+|.++ |.+..+++-+++.||.++|||||+|.+.+.|.-|.+.||++.+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345679999999999999999999998 7888899999999999999999999999999999999999999999999988
Q ss_pred eeCC
Q psy2141 109 AITP 112 (173)
Q Consensus 109 a~~~ 112 (173)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6554
No 65
>KOG0110|consensus
Probab=99.26 E-value=4.2e-12 Score=107.67 Aligned_cols=109 Identities=21% Similarity=0.363 Sum_probs=89.8
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
|+|+.|.+..+.+.|...-. .... .....++|+|.|||+..+-.+++.+|..||.+..|+|+.-...+.++|||||+|
T Consensus 585 ldGH~l~lk~S~~k~~~~~g-K~~~-~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f 662 (725)
T KOG0110|consen 585 LDGHKLELKISENKPASTVG-KKKS-KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDF 662 (725)
T ss_pred ecCceEEEEeccCccccccc-cccc-cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeec
Confidence 67888888766543333222 1111 112367999999999999999999999999999999988766778899999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
-+..+|.+|++.|.+..+.||+|.+.|++..
T Consensus 663 ~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 663 LTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred cCcHHHHHHHHhhcccceechhhheehhccc
Confidence 9999999999999999999999999999753
No 66
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.26 E-value=3.6e-11 Score=102.03 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCC--C--------CHHHHHHHhhccCceeEEEEccC---CCCCCcceEEEEEEcCHHHHHHHHHhcCC
Q psy2141 30 KLYNRIYVASIHPD--L--------TEEDIKSVFEAFGPIKYCKLQQG---SSPHRHKGYGFIEYETKQASNEAISSMNL 96 (173)
Q Consensus 30 ~~~~~l~V~nLp~~--~--------~e~~L~~~F~~~G~v~~~~i~~~---~~~g~~~g~afv~f~~~~~a~~a~~~l~g 96 (173)
.+.++|+|.||... + ..++|+++|++||.|..|.|+++ ..++.++|++||+|.+.++|++|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 46788999999642 1 12578999999999999999875 23456789999999999999999999999
Q ss_pred ceeCCeEEEEEEee
Q psy2141 97 FDLGGQYLRVGRAI 110 (173)
Q Consensus 97 ~~i~g~~l~v~~a~ 110 (173)
..++|+.|.|.|..
T Consensus 487 r~~~gr~v~~~~~~ 500 (509)
T TIGR01642 487 RKFNDRVVVAAFYG 500 (509)
T ss_pred CEECCeEEEEEEeC
Confidence 99999999999864
No 67
>KOG4205|consensus
Probab=99.21 E-value=3.3e-11 Score=95.71 Aligned_cols=109 Identities=24% Similarity=0.408 Sum_probs=88.4
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
|+||.|.+.++...-...... ......++|||+||.++++++|+++|.+||.|..+.++.|+.+.+++||+||.|
T Consensus 72 ~dgr~ve~k~av~r~~~~~~~-----~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~ 146 (311)
T KOG4205|consen 72 LDGRSVEPKRAVSREDQTKVG-----RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTF 146 (311)
T ss_pred cCCccccceeccCcccccccc-----cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEe
Confidence 678888877765321111100 011467999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCCC
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 116 (173)
.+.+.+++++ ...-+.+.|+.+.|+.|.++....
T Consensus 147 ~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 147 DSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ccccccceec-ccceeeecCceeeEeeccchhhcc
Confidence 9999999988 447789999999999998765443
No 68
>KOG0132|consensus
Probab=99.20 E-value=4.5e-11 Score=102.38 Aligned_cols=76 Identities=22% Similarity=0.456 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 111 (173)
.+|||||.|+..++|.+|..+|+.||.|.+|.++.. +|||||.+....+|++|+..|+...+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 679999999999999999999999999999998765 79999999999999999999999999999999999986
Q ss_pred CC
Q psy2141 112 PP 113 (173)
Q Consensus 112 ~~ 113 (173)
+.
T Consensus 495 ~G 496 (894)
T KOG0132|consen 495 KG 496 (894)
T ss_pred CC
Confidence 53
No 69
>KOG4205|consensus
Probab=99.19 E-value=2.4e-11 Score=96.48 Aligned_cols=86 Identities=20% Similarity=0.503 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
..++||||+|+++++++.|++.|.+||.|.+|.+++|+.+++++||+||+|.+.+...+++.. .-+.|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999998888743 5578999999999988
Q ss_pred CCCCCCC
Q psy2141 111 TPPNALH 117 (173)
Q Consensus 111 ~~~~~~~ 117 (173)
++.....
T Consensus 84 ~r~~~~~ 90 (311)
T KOG4205|consen 84 SREDQTK 90 (311)
T ss_pred Ccccccc
Confidence 7655443
No 70
>KOG4661|consensus
Probab=99.18 E-value=1.1e-10 Score=97.49 Aligned_cols=86 Identities=20% Similarity=0.426 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||.+|...+..-+|+.+|++||+|...+++.+..+.-.++|+||++.+..+|.+||..||..+|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 44789999999999999999999999999999999998777778999999999999999999999999999999999998
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
+..+..
T Consensus 483 KNEp~G 488 (940)
T KOG4661|consen 483 KNEPGG 488 (940)
T ss_pred ccCccc
Confidence 866544
No 71
>KOG0153|consensus
Probab=99.16 E-value=1.2e-10 Score=91.88 Aligned_cols=76 Identities=21% Similarity=0.462 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM-NLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l-~g~~i~g~~l~v~~ 108 (173)
....+||||+|...++|.+|++.|.+||.|+.+.+... +++|||+|.+.+.|+.|.+.+ +...|+|++|+|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 45789999999999999999999999999999998776 579999999999999987754 55778999999999
Q ss_pred eeC
Q psy2141 109 AIT 111 (173)
Q Consensus 109 a~~ 111 (173)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 987
No 72
>KOG4212|consensus
Probab=99.09 E-value=2.5e-10 Score=92.59 Aligned_cols=76 Identities=20% Similarity=0.331 Sum_probs=69.4
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
.++.|+|+|.|||+++|+..|++-|..||.|....|+. .|+++| .|.|.+.++|++||..|+|..++|+.|+|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 35788999999999999999999999999999998843 577777 9999999999999999999999999999987
Q ss_pred e
Q psy2141 109 A 109 (173)
Q Consensus 109 a 109 (173)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 73
>KOG0110|consensus
Probab=99.08 E-value=6e-10 Score=94.80 Aligned_cols=81 Identities=20% Similarity=0.409 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCC---CcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH---RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g---~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
..++|||.||+++++.++|...|..+|.|..+.|...+... .+.|||||+|.+.++|++|++.|+|+.|+|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34449999999999999999999999999999887664221 134999999999999999999999999999999999
Q ss_pred EeeC
Q psy2141 108 RAIT 111 (173)
Q Consensus 108 ~a~~ 111 (173)
++..
T Consensus 594 ~S~~ 597 (725)
T KOG0110|consen 594 ISEN 597 (725)
T ss_pred eccC
Confidence 9873
No 74
>KOG0123|consensus
Probab=99.03 E-value=9.8e-10 Score=89.74 Aligned_cols=77 Identities=23% Similarity=0.479 Sum_probs=70.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
..|||| ++++|..|.+.|+++|++.++++-+|. | +-|||||.|.+.++|++|++.||...+.|++|++-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 889999999999999999999999996 5 9999999999999999999999999999999999998765
Q ss_pred CCC
Q psy2141 113 PNA 115 (173)
Q Consensus 113 ~~~ 115 (173)
+..
T Consensus 76 ~~~ 78 (369)
T KOG0123|consen 76 PSL 78 (369)
T ss_pred Cce
Confidence 443
No 75
>KOG0533|consensus
Probab=99.03 E-value=1.5e-09 Score=83.30 Aligned_cols=84 Identities=17% Similarity=0.360 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
....+|+|.|||..+.+++|+++|..||.++.+.+.+++ .|.+.|.|-|.|...++|.++++.+||..++|+.|++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 345789999999999999999999999999999999995 9999999999999999999999999999999999988876
Q ss_pred eCCCC
Q psy2141 110 ITPPN 114 (173)
Q Consensus 110 ~~~~~ 114 (173)
.+...
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 65433
No 76
>KOG0151|consensus
Probab=98.97 E-value=2.5e-09 Score=91.17 Aligned_cols=82 Identities=17% Similarity=0.381 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCC---CCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS---PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~---~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
.+++|||+||++.++|+.|...|..||+|..++|++.+. ..+.+.|+||.|-+..++++|++.|+|..+.++.+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 467899999999999999999999999999999999752 24456799999999999999999999999999999999
Q ss_pred EeeCC
Q psy2141 108 RAITP 112 (173)
Q Consensus 108 ~a~~~ 112 (173)
|++.-
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 99654
No 77
>KOG0226|consensus
Probab=98.94 E-value=1.1e-09 Score=83.21 Aligned_cols=83 Identities=18% Similarity=0.366 Sum_probs=76.1
Q ss_pred hhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
+....+.+||+|-|.-+++++.|-..|.+|-.-...++++|+.+|+++||+||.|.+..++.+|++.|+|.-++.++|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 33456889999999999999999999999988888999999999999999999999999999999999999999999987
Q ss_pred EEe
Q psy2141 107 GRA 109 (173)
Q Consensus 107 ~~a 109 (173)
...
T Consensus 265 RkS 267 (290)
T KOG0226|consen 265 RKS 267 (290)
T ss_pred hhh
Confidence 554
No 78
>KOG0120|consensus
Probab=98.92 E-value=1.4e-09 Score=90.76 Aligned_cols=112 Identities=28% Similarity=0.460 Sum_probs=95.3
Q ss_pred CCCcccccCCCCCCCCCcchhhhh------------hhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCC
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEI------------TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS 69 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~------------~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~ 69 (173)
+.|+.+++.++..+.....+.... .......+++||++||...++..++++...||++....++.+..
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 578999999888775444333222 22234467899999999999999999999999999999999999
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCC
Q psy2141 70 PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPP 113 (173)
Q Consensus 70 ~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~ 113 (173)
+|.++||||.+|.+......|+..|||+.+++++|.|..+....
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 99999999999999999999999999999999999999987543
No 79
>KOG0116|consensus
Probab=98.91 E-value=3.6e-09 Score=87.16 Aligned_cols=86 Identities=29% Similarity=0.478 Sum_probs=71.4
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
.....+|||+|||.++++++|++.|..||.|+...|..-.-.++..+||||+|.+.++++.+|++ +-..+++++|.|+-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34456799999999999999999999999999887766432344559999999999999999987 57889999999988
Q ss_pred eeCCCCC
Q psy2141 109 AITPPNA 115 (173)
Q Consensus 109 a~~~~~~ 115 (173)
.++....
T Consensus 364 k~~~~~g 370 (419)
T KOG0116|consen 364 KRPGFRG 370 (419)
T ss_pred ccccccc
Confidence 7764333
No 80
>KOG4209|consensus
Probab=98.90 E-value=6.5e-09 Score=79.71 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=78.3
Q ss_pred hhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
....+.+.+||+|+.+.++.+++...|+.||.+..+.+..|+..++++||+||+|.+.+..+.++. |++..+.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 344567899999999999998999999999999999999999999999999999999999999997 9999999999999
Q ss_pred EEeeCC
Q psy2141 107 GRAITP 112 (173)
Q Consensus 107 ~~a~~~ 112 (173)
.+.+..
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 887755
No 81
>KOG1457|consensus
Probab=98.89 E-value=2.1e-08 Score=75.18 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=70.1
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccC-CCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC---CeE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG-SSPHRHKGYGFIEYETKQASNEAISSMNLFDLG---GQY 103 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~-~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~---g~~ 103 (173)
+...-+||||.+||.++...+|..+|..|.--+.+.+... +..+-.+-+||++|.+..+|.+|+..|||..++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3445899999999999999999999999866666655442 222223579999999999999999999998876 688
Q ss_pred EEEEEeeCCCCC
Q psy2141 104 LRVGRAITPPNA 115 (173)
Q Consensus 104 l~v~~a~~~~~~ 115 (173)
|+++.++.....
T Consensus 110 LhiElAKSNtK~ 121 (284)
T KOG1457|consen 110 LHIELAKSNTKR 121 (284)
T ss_pred eEeeehhcCccc
Confidence 999998854433
No 82
>KOG1548|consensus
Probab=98.86 E-value=8.7e-09 Score=81.46 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeE--------EEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKY--------CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG 101 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~--------~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 101 (173)
.....|||.|||.++|.+++.++|+++|-|.. |++-++. .|+.+|=|.+.|...++++-|++.|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34667999999999999999999999997754 7888884 69999999999999999999999999999999
Q ss_pred eEEEEEEeeCC
Q psy2141 102 QYLRVGRAITP 112 (173)
Q Consensus 102 ~~l~v~~a~~~ 112 (173)
+.|+|..|+-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999998743
No 83
>KOG4660|consensus
Probab=98.85 E-value=1.9e-09 Score=89.73 Aligned_cols=72 Identities=15% Similarity=0.378 Sum_probs=66.1
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
..+.++|+|-|||..+++++|+++|+.||.|+.++.... .+|..||+|.+..+|++|++.|++.++.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 346889999999999999999999999999999776444 589999999999999999999999999999888
No 84
>KOG0106|consensus
Probab=98.82 E-value=6.3e-09 Score=78.36 Aligned_cols=72 Identities=25% Similarity=0.554 Sum_probs=66.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
..+|||+||+.+.+.+|+.+|..||.+..+.+. .||+||+|.+..+|..|+..||+.++.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999874 468999999999999999999999999988999998853
No 85
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.77 E-value=7.5e-08 Score=64.03 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=68.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc--CceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC----CeEEEE
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAF--GPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG----GQYLRV 106 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~--G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~----g~~l~v 106 (173)
+||.|.|||-..+.++|.+++... |....+.++.|..++.+.|||||.|.+.+.+.+-.+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988653 66677888889889999999999999999999999999998886 355577
Q ss_pred EEeeC
Q psy2141 107 GRAIT 111 (173)
Q Consensus 107 ~~a~~ 111 (173)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77653
No 86
>KOG4454|consensus
Probab=98.71 E-value=5.3e-09 Score=78.11 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
..+||||+|+...++|+.|.++|-+-|+|.++.|..++ .++.| ||||.|.++....-|++.|||..+.++.+.+..-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 46899999999999999999999999999999998885 66666 99999999999999999999999999888876644
No 87
>KOG0147|consensus
Probab=98.59 E-value=1.8e-08 Score=83.84 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=81.2
Q ss_pred hhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2141 22 IDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG 101 (173)
Q Consensus 22 ~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 101 (173)
...+..+++..+++|+.-|+...++.+|.++|+.+|+|..|+++.|+.++.++|.+||+|.+.+....|| .|.|..+.|
T Consensus 169 ~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg 247 (549)
T KOG0147|consen 169 SRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLG 247 (549)
T ss_pred cccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccC
Confidence 4455667788999999999999999999999999999999999999999999999999999999999999 889999999
Q ss_pred eEEEEEEee
Q psy2141 102 QYLRVGRAI 110 (173)
Q Consensus 102 ~~l~v~~a~ 110 (173)
.+|.|....
T Consensus 248 ~pv~vq~sE 256 (549)
T KOG0147|consen 248 VPVIVQLSE 256 (549)
T ss_pred ceeEecccH
Confidence 999997754
No 88
>KOG1190|consensus
Probab=98.56 E-value=5.1e-07 Score=73.08 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 32 YNRIYVASIHPD-LTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 32 ~~~l~V~nLp~~-~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
...|.|.||..+ +|.+.|.-+|.-||.|.+++|++.+ +--|.|.|.+...|+-|++.|+|..|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 578889999865 9999999999999999999999986 4679999999999999999999999999999999988
Q ss_pred CC
Q psy2141 111 TP 112 (173)
Q Consensus 111 ~~ 112 (173)
..
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 44
No 89
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.43 E-value=1.2e-06 Score=56.10 Aligned_cols=69 Identities=13% Similarity=0.246 Sum_probs=47.5
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhccC-ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 33 NRIYVASIHPDLTEED----IKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~----L~~~F~~~G-~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
..|||.|||.+..... |++++..+| +|..+. .+.|++.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3589999999887755 566666665 676652 4689999999999999999999999999999999
Q ss_pred EeeC
Q psy2141 108 RAIT 111 (173)
Q Consensus 108 ~a~~ 111 (173)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9743
No 90
>KOG4211|consensus
Probab=98.42 E-value=1.5e-06 Score=71.74 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
....-|-+.+|||++|+++|.++|+.+ .|+.+.+.+. +|+..|-|||+|.+.+++++|++. +...+..+-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 445667889999999999999999999 5888777664 799999999999999999999965 778888899988666
Q ss_pred eCCC
Q psy2141 110 ITPP 113 (173)
Q Consensus 110 ~~~~ 113 (173)
...+
T Consensus 84 ~~~e 87 (510)
T KOG4211|consen 84 GGAE 87 (510)
T ss_pred CCcc
Confidence 4443
No 91
>KOG4211|consensus
Probab=98.41 E-value=9.5e-07 Score=72.95 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=79.5
Q ss_pred CCCCcccccCCCCCCCCCcchhhhhhhhh-CCCCeEEEcCCCCCCCHHHHHHHhhccCceeE-EEEccCCCCCCcceEEE
Q psy2141 1 MQHFPHVQVGRPSNMPQAQSVIDEITEEA-KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKY-CKLQQGSSPHRHKGYGF 78 (173)
Q Consensus 1 ~l~gr~i~v~~~~~~~~~~~~~~~~~~~~-~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~-~~i~~~~~~g~~~g~af 78 (173)
+|+.|.|.|..... .+++..++...... .+...|-+.+||+.|++++|.++|+..--|.. +.++.+ ..+++.|-||
T Consensus 72 ~mg~RYIEVf~~~~-~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAf 149 (510)
T KOG4211|consen 72 SMGHRYIEVFTAGG-AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAF 149 (510)
T ss_pred HhCCceEEEEccCC-ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceE
Confidence 36788999877643 22333333333222 35678899999999999999999998754444 556666 4788999999
Q ss_pred EEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 79 IEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 79 v~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
|.|.+.+.|++|+.. |...|+.+-|.|-.+.
T Consensus 150 VqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 150 VQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred EEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 999999999999976 6778888888885543
No 92
>KOG1456|consensus
Probab=98.34 E-value=1.2e-06 Score=70.32 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=89.1
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHPD-LTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~-~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
.+.+.+.|.+|... ++.+.|..+|-.||.|+++++++.+ .|-|.|++.+....++|+..||+..+-|.+|.|+.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 45788999999875 8889999999999999999999875 78999999999999999999999999999999988
Q ss_pred eeCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhhcccchhhhhhhhhhHHHHH
Q psy2141 109 AITPPNALHSSKGPAPSTSHMPTAAAVAAAAATAKIQAMDGGATNAVGVLSKLSQVFF 166 (173)
Q Consensus 109 a~~~~~~~~~~~~~~~~~~~~~~~~~~aa~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (173)
++...-....+=.-+...+.. -.-+.+-..+-.+..-++.|+++.++++.++||
T Consensus 360 SkQ~~v~~~~pflLpDgSpSf----Kdys~SkNnRFssp~qAsKNrIq~Ps~vLHffN 413 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSF----KDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFN 413 (494)
T ss_pred ccccccccCCceecCCCCcch----hhcccccccccCChhHhhcccccCCcceeEEec
Confidence 764311110100001111110 001122223333334445677888888777776
No 93
>KOG1457|consensus
Probab=98.28 E-value=7.8e-07 Score=66.90 Aligned_cols=66 Identities=15% Similarity=0.358 Sum_probs=54.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL 99 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i 99 (173)
+...||||.||..+++|++|+.+|+.|..-..++|... . .-..||++|++.+.|..|+..|+|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 44679999999999999999999999976566665322 2 245899999999999999999998665
No 94
>KOG4849|consensus
Probab=98.23 E-value=1.1e-06 Score=70.07 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=65.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC--ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFG--PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G--~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l 104 (173)
.-.+|||||-|.+|+++|.+.+...| .+.++++..++.+|++||||+|...+.....+-++.|..++|+|+.=
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 44799999999999999999998877 67788899999999999999999999999999999999999999643
No 95
>KOG4206|consensus
Probab=98.16 E-value=9.5e-06 Score=61.05 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=69.0
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG-GQYLRVG 107 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~-g~~l~v~ 107 (173)
..+...+|+.|||.+++.+.|..+|.+|..-++++++..+ ++.|||+|.+...+..|...|++..|- .+.+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5678899999999999999999999999988999988764 789999999999999999999998887 7888887
Q ss_pred Eee
Q psy2141 108 RAI 110 (173)
Q Consensus 108 ~a~ 110 (173)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 764
No 96
>KOG4210|consensus
Probab=98.07 E-value=2.9e-06 Score=67.19 Aligned_cols=88 Identities=20% Similarity=0.399 Sum_probs=78.7
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 30 KLYNRIY-VASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~-V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
....++| |+++++.+++++|+..|..+|.|..+++..++.++..+||++++|.+......++.. +...+.++++.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3455666 999999999999999999999999999999999999999999999999999999877 88999999999999
Q ss_pred eeCCCCCCCC
Q psy2141 109 AITPPNALHS 118 (173)
Q Consensus 109 a~~~~~~~~~ 118 (173)
..+.+.....
T Consensus 261 ~~~~~~~~~~ 270 (285)
T KOG4210|consen 261 DEPRPKSDGG 270 (285)
T ss_pred CCCCcccccc
Confidence 9887666444
No 97
>KOG1995|consensus
Probab=98.05 E-value=4.1e-06 Score=66.85 Aligned_cols=84 Identities=24% Similarity=0.242 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeE--------EEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKY--------CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG 101 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~--------~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 101 (173)
....+|||-+||..+++++|.++|.++|.|.. +.|-++++|+..||-|.|.|.+...|+.|+.-+++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 44678999999999999999999999997743 6677889999999999999999999999999999999999
Q ss_pred eEEEEEEeeCCC
Q psy2141 102 QYLRVGRAITPP 113 (173)
Q Consensus 102 ~~l~v~~a~~~~ 113 (173)
..|+|..+..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998887554
No 98
>KOG0106|consensus
Probab=97.90 E-value=1.3e-05 Score=60.51 Aligned_cols=73 Identities=18% Similarity=0.432 Sum_probs=63.7
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
....+.+.|.|++..+.+.+|.+.|..+|.+....+ ..+++||+|...+++.+|+..|++..+.++.|++..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 455778999999999999999999999999854433 367999999999999999999999999999999944
Q ss_pred e
Q psy2141 109 A 109 (173)
Q Consensus 109 a 109 (173)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 3
No 99
>KOG3152|consensus
Probab=97.81 E-value=1.8e-05 Score=60.71 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=62.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCC--------CCcceE----EEEEEcCHHHHHHHHHhcCCce
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSP--------HRHKGY----GFIEYETKQASNEAISSMNLFD 98 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~--------g~~~g~----afv~f~~~~~a~~a~~~l~g~~ 98 (173)
..-.||+++||+.++...|+++|+.||.|-.|.+.....+ |.+++. |-|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988776544 333332 5699999999999999999999
Q ss_pred eCCeE
Q psy2141 99 LGGQY 103 (173)
Q Consensus 99 i~g~~ 103 (173)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99964
No 100
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.81 E-value=5.6e-05 Score=51.15 Aligned_cols=58 Identities=22% Similarity=0.516 Sum_probs=38.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g 96 (173)
+.|+|.+++..++-++|++.|+.||.|..|.+... ..-|+|.|.+.+.|+.|+..+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHh
Confidence 46888899999999999999999999999998665 34799999999999999987643
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.77 E-value=7.2e-05 Score=59.61 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCCCHHH------HHHHhhccCceeEEEEccCCCCCC-cce-E-EEEEEcCHHHHHHHHHhcCCceeCCeE
Q psy2141 33 NRIYVASIHPDLTEED------IKSVFEAFGPIKYCKLQQGSSPHR-HKG-Y-GFIEYETKQASNEAISSMNLFDLGGQY 103 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~------L~~~F~~~G~v~~~~i~~~~~~g~-~~g-~-afv~f~~~~~a~~a~~~l~g~~i~g~~ 103 (173)
.-+||-+||+.+..++ -.++|.+||.|..+.+.+...+-. ..+ + .||+|.+.++|.+||...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3589999998765554 356899999999987755321111 122 2 399999999999999999999999999
Q ss_pred EEEEEeeC
Q psy2141 104 LRVGRAIT 111 (173)
Q Consensus 104 l~v~~a~~ 111 (173)
|+..|...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99988653
No 102
>KOG1855|consensus
Probab=97.73 E-value=2.9e-05 Score=63.42 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=58.7
Q ss_pred hhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccC---CCCC--C--------cceEEEEEEcCHHHHHHHH
Q psy2141 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG---SSPH--R--------HKGYGFIEYETKQASNEAI 91 (173)
Q Consensus 25 ~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~---~~~g--~--------~~g~afv~f~~~~~a~~a~ 91 (173)
...++.+.++|.+.|||.+-.-+.|.++|+.+|.|..|+|... ..+. . .+-+|+|+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3344568999999999999777999999999999999998765 2221 1 2458999999999999999
Q ss_pred HhcCC
Q psy2141 92 SSMNL 96 (173)
Q Consensus 92 ~~l~g 96 (173)
+.|+.
T Consensus 304 e~~~~ 308 (484)
T KOG1855|consen 304 ELLNP 308 (484)
T ss_pred Hhhch
Confidence 98865
No 103
>KOG2314|consensus
Probab=97.67 E-value=0.00027 Score=59.74 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=62.4
Q ss_pred CCeEEEcCCCCCCC------HHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC-CeEE
Q psy2141 32 YNRIYVASIHPDLT------EEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG-GQYL 104 (173)
Q Consensus 32 ~~~l~V~nLp~~~~------e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~-g~~l 104 (173)
...|+|.|+|.--. ..-|..+|+++|++..+.+.-+..+| .+||.|++|.+..+|+.|++.|||+.++ .++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 56789999996321 13467789999999999999885444 8999999999999999999999998887 4667
Q ss_pred EEEEe
Q psy2141 105 RVGRA 109 (173)
Q Consensus 105 ~v~~a 109 (173)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77543
No 104
>KOG0120|consensus
Probab=97.65 E-value=0.00022 Score=60.17 Aligned_cols=64 Identities=14% Similarity=0.283 Sum_probs=52.3
Q ss_pred HHHHHhhccCceeEEEEccCC---CCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeC
Q psy2141 48 DIKSVFEAFGPIKYCKLQQGS---SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 48 ~L~~~F~~~G~v~~~~i~~~~---~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 111 (173)
+++.-+++||.|..|.+.++- ...-..|.-||+|.+.+++++|++.|+|.++.|+.|...|-..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 355556689999999998872 2233466789999999999999999999999999999988643
No 105
>KOG4307|consensus
Probab=97.58 E-value=0.00029 Score=60.99 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=66.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCce-eEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPI-KYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v-~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
.+.|-+.|+|++++-+||.++|..|-.+ .+|.+.+. ..|...|-|.|.|++.++|.+|...|+++.|..++|++..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3478899999999999999999999654 34555555 6899999999999999999999999999999999998764
No 106
>KOG1190|consensus
Probab=97.56 E-value=0.00026 Score=57.71 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCe-EEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQ-YLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~-~l~v~~ 108 (173)
.++.+|...|+|.+++|++|+..|..-|-..+..... ++.+.++++.+.+.++|-.|+..++.+.+++. .|+|++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 4567999999999999999999999988665443322 23467999999999999999999999988864 889999
Q ss_pred eeC
Q psy2141 109 AIT 111 (173)
Q Consensus 109 a~~ 111 (173)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 864
No 107
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.51 E-value=0.00076 Score=45.13 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=52.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEE-EccCC------CCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCK-LQQGS------SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQY 103 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~-i~~~~------~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~ 103 (173)
..+.|.|-+.|.. ....+.+.|++||.|.+.. +.++. .......+-.|.|.+..+|.+|+.. ||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4567888899988 4567778999999998764 11110 0112356899999999999999966 999999865
Q ss_pred E-EEEEee
Q psy2141 104 L-RVGRAI 110 (173)
Q Consensus 104 l-~v~~a~ 110 (173)
| -|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 5 466654
No 108
>KOG0129|consensus
Probab=97.40 E-value=0.00055 Score=57.30 Aligned_cols=69 Identities=23% Similarity=0.391 Sum_probs=61.9
Q ss_pred hhhhhCCCCeEEEcCCCCCCCHHHHHHHhh-ccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHh
Q psy2141 25 ITEEAKLYNRIYVASIHPDLTEEDIKSVFE-AFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93 (173)
Q Consensus 25 ~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~-~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 93 (173)
.....++.+|||||+||.-++.++|-.+|. -||.|.-+-|=.|.+-+-.+|-|-|+|.+...--+||..
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 344557899999999999999999999998 799999999999977888999999999999999999864
No 109
>KOG1548|consensus
Probab=97.34 E-value=0.00099 Score=53.33 Aligned_cols=77 Identities=13% Similarity=0.231 Sum_probs=60.9
Q ss_pred CCCCeEEEcCCC----CCCC-------HHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCce
Q psy2141 30 KLYNRIYVASIH----PDLT-------EEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFD 98 (173)
Q Consensus 30 ~~~~~l~V~nLp----~~~~-------e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~ 98 (173)
+..++|.+.|+= +..+ .++|++-.++||.|..+.+.- ..+.|.+-|.|.+.++|..||+.|+|.-
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 347789999883 2333 245666678999999997642 3468999999999999999999999999
Q ss_pred eCCeEEEEEEee
Q psy2141 99 LGGQYLRVGRAI 110 (173)
Q Consensus 99 i~g~~l~v~~a~ 110 (173)
++||.|.-..-.
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999776543
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.19 E-value=0.0014 Score=38.67 Aligned_cols=52 Identities=23% Similarity=0.525 Sum_probs=41.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHH
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~ 91 (173)
+.|-|.+.+.+.. +.+...|..||.|..+.+.. ...+.++.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4677888887755 44555889999999988752 3568999999999999884
No 111
>KOG0105|consensus
Probab=97.17 E-value=0.0056 Score=45.21 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=56.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL 99 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i 99 (173)
.....|.|.+||..-++++|++...+-|.|....+.+| |++.|+|...++.+-|++.|+...+
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 44678999999999999999999999999999998877 5899999999999999999988554
No 112
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.12 E-value=0.0045 Score=44.04 Aligned_cols=77 Identities=10% Similarity=0.268 Sum_probs=53.4
Q ss_pred hhhhCCCCeEEEcCCC-----C-CCCH---HHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC
Q psy2141 26 TEEAKLYNRIYVASIH-----P-DLTE---EDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96 (173)
Q Consensus 26 ~~~~~~~~~l~V~nLp-----~-~~~e---~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g 96 (173)
....++..||.|.-+. . ...+ .+|.+.|..||.+.-++++.+ .-.|+|.+-++|.+|+ .++|
T Consensus 21 ~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg 91 (146)
T PF08952_consen 21 SSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDG 91 (146)
T ss_dssp -----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCC
T ss_pred HhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCC
Confidence 4455678888887665 1 2222 267888899999988888654 4689999999999999 6799
Q ss_pred ceeCCeEEEEEEeeC
Q psy2141 97 FDLGGQYLRVGRAIT 111 (173)
Q Consensus 97 ~~i~g~~l~v~~a~~ 111 (173)
.++.|+.|+|+...+
T Consensus 92 ~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 92 IQVNGRTLKIRLKTP 106 (146)
T ss_dssp SEETTEEEEEEE---
T ss_pred cEECCEEEEEEeCCc
Confidence 999999999987654
No 113
>KOG1456|consensus
Probab=97.11 E-value=0.0027 Score=51.46 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=61.5
Q ss_pred CCCeEEEcCCC--CCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEE
Q psy2141 31 LYNRIYVASIH--PDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG--QYLRV 106 (173)
Q Consensus 31 ~~~~l~V~nLp--~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--~~l~v 106 (173)
+...|.+.=|. +-++.+-|..+....|+|.++.|++. +| --|.|+|.+.+.|++|...|||..|.- .+|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 34444444443 45888999999999999999988764 33 358999999999999999999988763 68899
Q ss_pred EEeeCC
Q psy2141 107 GRAITP 112 (173)
Q Consensus 107 ~~a~~~ 112 (173)
+|+++.
T Consensus 194 eyAkP~ 199 (494)
T KOG1456|consen 194 EYAKPT 199 (494)
T ss_pred EecCcc
Confidence 999865
No 114
>KOG0112|consensus
Probab=97.01 E-value=0.00079 Score=59.72 Aligned_cols=78 Identities=28% Similarity=0.477 Sum_probs=68.8
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG--QYLRV 106 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--~~l~v 106 (173)
....+.+|+++|...+....|...|..||.|..+.+-. ..-|+++.|.+...++.|++.|-|..+++ ++++|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 35678899999999999999999999999999987633 25699999999999999999999999987 78999
Q ss_pred EEeeCC
Q psy2141 107 GRAITP 112 (173)
Q Consensus 107 ~~a~~~ 112 (173)
.++...
T Consensus 526 dla~~~ 531 (975)
T KOG0112|consen 526 DLASPP 531 (975)
T ss_pred ccccCC
Confidence 998754
No 115
>KOG1365|consensus
Probab=96.95 E-value=0.00098 Score=54.12 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=65.8
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCc-eeE--EEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGP-IKY--CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~-v~~--~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
.++...|-+.+||++.+.++|..+|..|.. |.. +.++.+ ..|+..|-|||+|.+.+.|..|...-+.+....|-|.
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 344678889999999999999999999863 333 677777 5789999999999999999999988777777788888
Q ss_pred EEEe
Q psy2141 106 VGRA 109 (173)
Q Consensus 106 v~~a 109 (173)
|-.+
T Consensus 356 vfp~ 359 (508)
T KOG1365|consen 356 VFPC 359 (508)
T ss_pred Eeec
Confidence 7544
No 116
>KOG0128|consensus
Probab=96.93 E-value=0.00063 Score=59.98 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 111 (173)
...|+|.|.|+..|.++|+.++.++|.+++++++..+ .|+.+|.++|.|.+..++.++....+...+.-+.+.|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5679999999999999999999999999999988885 899999999999999999999888887777777777766444
No 117
>KOG0129|consensus
Probab=96.91 E-value=0.0027 Score=53.26 Aligned_cols=62 Identities=24% Similarity=0.485 Sum_probs=46.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEcc-C--CCCCCcce---EEEEEEcCHHHHHHHHHh
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQ-G--SSPHRHKG---YGFIEYETKQASNEAISS 93 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~-~--~~~g~~~g---~afv~f~~~~~a~~a~~~ 93 (173)
-.++||||+||++++|+.|...|..||.+.- .... . +.--.++| |.|+.|+++.....-+..
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 3679999999999999999999999997532 2221 0 11122466 999999999988776544
No 118
>KOG1996|consensus
Probab=96.91 E-value=0.0038 Score=49.14 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=53.9
Q ss_pred HHHHHHHhhccCceeEEEEccCCCCCCcceE-EEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 46 EEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY-GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 46 e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~-afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
++++++...+||+|..|.|...+........ -||+|...++|.+|+-.|||..++|+.++-++-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3567888899999999988887644444444 5999999999999999999999999998877654
No 119
>KOG0128|consensus
Probab=96.84 E-value=5.1e-05 Score=66.60 Aligned_cols=72 Identities=19% Similarity=0.396 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCe
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQ 102 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~ 102 (173)
...++||.||+..+.+.+|...|..+|.+..+++.-.+..++.+|.|+++|...+.+.+|+....++.++..
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~ 737 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKI 737 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhh
Confidence 356899999999999999999999999988887776667899999999999999999999977666555533
No 120
>KOG2193|consensus
Probab=96.60 E-value=0.0017 Score=53.45 Aligned_cols=77 Identities=23% Similarity=0.445 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC-ceeCCeEEEEEEeeC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL-FDLGGQYLRVGRAIT 111 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g-~~i~g~~l~v~~a~~ 111 (173)
.++|+|||.+..+..+|+.+|...---..-.++. .-||+||.+.+..-+.+|++.++| .++.|.++.+....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4799999999999999999997641111111111 147999999999999999999999 568899999988876
Q ss_pred CCCC
Q psy2141 112 PPNA 115 (173)
Q Consensus 112 ~~~~ 115 (173)
+...
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 6544
No 121
>KOG0112|consensus
Probab=96.59 E-value=0.00055 Score=60.67 Aligned_cols=82 Identities=15% Similarity=0.302 Sum_probs=68.7
Q ss_pred hhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
++...+++||+|||+..+++.+|+..|..+|.|.+|.|-+.+ -+..--|+||.|.+...+..++..+.+..|....+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 344568999999999999999999999999999999987764 2334458999999999999999999998887666666
Q ss_pred EEe
Q psy2141 107 GRA 109 (173)
Q Consensus 107 ~~a 109 (173)
.+.
T Consensus 446 glG 448 (975)
T KOG0112|consen 446 GLG 448 (975)
T ss_pred ccc
Confidence 555
No 122
>KOG2416|consensus
Probab=96.48 E-value=0.003 Score=53.95 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-cCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee---CCeEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEA-FGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL---GGQYLR 105 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~-~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i---~g~~l~ 105 (173)
...+.|||.||-.-+|.-+|+.++.. .|.|....| |+ -+..|||.|.+.++|.+...+|||..| +.+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 45789999999988999999999994 556666522 22 467899999999999999999999776 457888
Q ss_pred EEEee
Q psy2141 106 VGRAI 110 (173)
Q Consensus 106 v~~a~ 110 (173)
+.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 88865
No 123
>KOG2202|consensus
Probab=96.45 E-value=0.0016 Score=50.21 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=50.0
Q ss_pred HHHHHhh-ccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeC
Q psy2141 48 DIKSVFE-AFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 48 ~L~~~F~-~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 111 (173)
++...|+ +||.|+.+.+-.+ ..-...|-.+|.|...++|++|++.||+.-+.|++|...+...
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 3444444 8999998855443 3344588899999999999999999999999999999888653
No 124
>KOG1365|consensus
Probab=96.40 E-value=0.021 Score=46.64 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=54.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc----CceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAF----GPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~----G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
.-.|-+.+||+++++.++.++|..- |..+.+.+++. .+|+..|=|||.|...++|+.|+.. |...++.|-|.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 3457778999999999999999732 23455555554 4788999999999999999999976 544555554433
No 125
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.15 E-value=0.056 Score=36.81 Aligned_cols=69 Identities=9% Similarity=0.028 Sum_probs=50.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG 101 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G-~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 101 (173)
....+.+...|..++.++|..+.+.+- .|..++|++|. ..++-.+.+.|.+.+.|..-.+.+||+.+.-
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344455555555566667766655553 67788999873 3367789999999999999999999988754
No 126
>KOG4307|consensus
Probab=96.04 E-value=0.0084 Score=52.29 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeE-EEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKY-CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~-~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
....|||..||..+++.++..+|..--.|++ |.|.+.. +++.++.|||.|...+.+..|...-+.+-++.+.|+|+-.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 3668999999999999999999998777777 6666664 7888999999999988888887665666677788888654
No 127
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.98 E-value=0.063 Score=32.62 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=43.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc---CceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhc
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAF---GPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~---G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 94 (173)
..+|+|.++.. ++.++++.+|..| .....+..+-|. -|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 46799999865 7889999999998 134577777663 5789999999999999764
No 128
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.93 E-value=0.04 Score=39.09 Aligned_cols=73 Identities=15% Similarity=0.275 Sum_probs=55.5
Q ss_pred hCCCCeEEEcCCCCCCCH-H---HHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q psy2141 29 AKLYNRIYVASIHPDLTE-E---DIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e-~---~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l 104 (173)
+.+..||.|.=|..++.. + .+.+.++.||+|.++.+. ++.-|.|+|.+..+|-+|+.+.+. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 357788999877665432 3 355566789999998652 356899999999999999999876 5567788
Q ss_pred EEEEe
Q psy2141 105 RVGRA 109 (173)
Q Consensus 105 ~v~~a 109 (173)
.|.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 88874
No 129
>KOG2068|consensus
Probab=95.92 E-value=0.0031 Score=50.35 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=60.0
Q ss_pred CeEEEcCCCCCCCHHH-HH--HHhhccCceeEEEEccCCC----CCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 33 NRIYVASIHPDLTEED-IK--SVFEAFGPIKYCKLQQGSS----PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~-L~--~~F~~~G~v~~~~i~~~~~----~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
.-+||-+|+.....+. |+ +.|.+||.|..+.+..+.. .+... -++|+|...++|..||...+|...+|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4578888887755444 33 4788999999998887652 12122 379999999999999999999999999887
Q ss_pred EEEeeCC
Q psy2141 106 VGRAITP 112 (173)
Q Consensus 106 v~~a~~~ 112 (173)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7776544
No 130
>KOG0115|consensus
Probab=95.87 E-value=0.01 Score=45.82 Aligned_cols=62 Identities=18% Similarity=0.385 Sum_probs=54.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 95 (173)
..|||.||+..++.+.|.+-|+.||+|....+.-| ..++..+-++|.|...-.+.+|++..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 67999999999999999999999999987655555 468888899999999999999998774
No 131
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.72 E-value=0.022 Score=42.04 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=49.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-cCce---eEEEEccCC--CCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC--
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEA-FGPI---KYCKLQQGS--SPHRHKGYGFIEYETKQASNEAISSMNLFDLGG-- 101 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~-~G~v---~~~~i~~~~--~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g-- 101 (173)
....+|.|++||+.++|+++.+.++. ++.- ..+.-..+. .....-.-|||.|.+.++...-.+.++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999987776 5544 233311221 111124468999999999999999999977643
Q ss_pred ---eEEEEEEee
Q psy2141 102 ---QYLRVGRAI 110 (173)
Q Consensus 102 ---~~l~v~~a~ 110 (173)
.+-.|.+|.
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 344666654
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.54 E-value=0.064 Score=39.91 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=46.1
Q ss_pred CHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcC--CceeCCeEEEEEEeeCC
Q psy2141 45 TEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN--LFDLGGQYLRVGRAITP 112 (173)
Q Consensus 45 ~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~--g~~i~g~~l~v~~a~~~ 112 (173)
....|+++|..|+.+..+..+.. -+-..|.|.+.+.|.++...|+ +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 44789999999999888877664 3457999999999999999999 99999999999988543
No 133
>KOG4676|consensus
Probab=95.52 E-value=0.029 Score=45.93 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=58.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCC---CCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS---PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~---~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
...|.|.||.+.++.++++.+|.-.|.|.++.|..... -....-.|||-|.+...+..|. .|.++.+-|+.|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 34789999999999999999999999999998766321 1223458999999999988887 5566666666665544
No 134
>KOG2253|consensus
Probab=94.58 E-value=0.02 Score=49.62 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=64.4
Q ss_pred hhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
....+..++||+|+...+..+-++.+...+|.|..++... |||..|.......+++..++-..++|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3445678999999999999999999999999998876532 9999999999999999999999999988877
Q ss_pred EEe
Q psy2141 107 GRA 109 (173)
Q Consensus 107 ~~a 109 (173)
+..
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 653
No 135
>KOG4660|consensus
Probab=94.57 E-value=0.069 Score=45.47 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=59.0
Q ss_pred hhhhCCCCeEEEcCCCCCCCHHHHHHHhh-ccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC---
Q psy2141 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFE-AFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG--- 101 (173)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~e~~L~~~F~-~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--- 101 (173)
.+-..+.+++.|.|+|-..|-..|.+.-. ..|.-..+.+..|-.+..+.|||||.|.+.+.+....++.||+.|..
T Consensus 382 ldge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS 461 (549)
T KOG4660|consen 382 LDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNS 461 (549)
T ss_pred HhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcc
Confidence 33334455566666665544444433322 24666778888888888899999999999999999999999987642
Q ss_pred -eEEEEEEeeC
Q psy2141 102 -QYLRVGRAIT 111 (173)
Q Consensus 102 -~~l~v~~a~~ 111 (173)
+...+.||+-
T Consensus 462 ~Kia~itYArI 472 (549)
T KOG4660|consen 462 EKIASITYARI 472 (549)
T ss_pred eeeeeeehhhh
Confidence 3336666653
No 136
>KOG4285|consensus
Probab=94.18 E-value=0.3 Score=38.89 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=53.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEE-EEEEee
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYL-RVGRAI 110 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l-~v~~a~ 110 (173)
+.-|-|-+.|..- ...+..+|++||.|.+.... ....|-+|.|.+..+|++||.. ||+.|+|..+ -|+.+.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 5667777888763 35677799999999886543 3456899999999999999955 9999998644 455543
No 137
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.16 E-value=0.25 Score=31.83 Aligned_cols=56 Identities=13% Similarity=0.276 Sum_probs=41.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g 96 (173)
....||. .|.++...||.++|+.||.|.- ..+.| .-|||...+.+.+..++..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEE-EEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 4456665 9999999999999999998643 34433 3699999999999999988753
No 138
>KOG2591|consensus
Probab=93.78 E-value=0.14 Score=43.83 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=55.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc--cCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC--ceeCCeEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEA--FGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL--FDLGGQYLR 105 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~--~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g--~~i~g~~l~ 105 (173)
.+.|.|.+.-||..+-+++++.+|.. +-++.+|.+-.+ .--||+|++..+|+.|.++|.. +++-|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34667889999999999999999976 557778877554 2469999999999999998865 567777764
Q ss_pred E
Q psy2141 106 V 106 (173)
Q Consensus 106 v 106 (173)
-
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 3
No 139
>KOG4574|consensus
Probab=93.63 E-value=0.05 Score=48.53 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=62.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee--CCeEEEEEEeeC
Q psy2141 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL--GGQYLRVGRAIT 111 (173)
Q Consensus 34 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i--~g~~l~v~~a~~ 111 (173)
+.++.|.+-..+-..|..++++||.|.+...+++ -..+.|+|...+.|-.|+++|+|+++ -|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4455566667777889999999999999998887 46899999999999999999999875 478899999886
Q ss_pred CCC
Q psy2141 112 PPN 114 (173)
Q Consensus 112 ~~~ 114 (173)
-+.
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 543
No 140
>KOG2135|consensus
Probab=93.23 E-value=0.068 Score=44.76 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 31 LYNRIYVASIHPDL-TEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 31 ~~~~l~V~nLp~~~-~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
..+.|-+.-.|+.. +-++|...|.+||.|..|.+-+. --.|.|+|.+..+|-+|. ..++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 34455555556654 34789999999999999987554 346899999999997777 44899999999999998
Q ss_pred eCCC
Q psy2141 110 ITPP 113 (173)
Q Consensus 110 ~~~~ 113 (173)
++.+
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8754
No 141
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.91 E-value=0.65 Score=29.03 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhhccC-----ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 42 PDLTEEDIKSVFEAFG-----PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 42 ~~~~e~~L~~~F~~~G-----~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
..++..+|..++...+ .|-.+++.. .|.||+... +.++.+++.|++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3477888888887764 455677743 389999886 5788999999999999999999864
No 142
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.14 E-value=1.4 Score=27.04 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=42.4
Q ss_pred CCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 43 DLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 43 ~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
.++-++++..+..|+ ...+. .|+ . .=||.|.+..+|++|.+..+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d~-----t-GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DDR-----T-GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ecC-----C-EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 356789999999995 34443 342 2 2489999999999999999999988877654
No 143
>KOG4210|consensus
Probab=91.19 E-value=0.13 Score=41.02 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=65.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
..+++|+|++.+.+.+.+...++..+|......+........++|++.+.|...+.+..++.......+.+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47789999999999988888899999988887777766788899999999999999999997655456666665554443
No 144
>KOG0804|consensus
Probab=90.26 E-value=1.2 Score=37.31 Aligned_cols=68 Identities=9% Similarity=0.157 Sum_probs=57.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG 101 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G-~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 101 (173)
.+.|+|-.+|-.++-.||..+...+- .|..+++++|. --++-..++.|.+.++|..-.+.+||+.+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999998887764 67889999973 2245578999999999999999999988764
No 145
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=89.85 E-value=0.55 Score=35.42 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=56.2
Q ss_pred CCCCcccccCCCCC--CCCCcch-----------hhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccC
Q psy2141 1 MQHFPHVQVGRPSN--MPQAQSV-----------IDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG 67 (173)
Q Consensus 1 ~l~gr~i~v~~~~~--~~~~~~~-----------~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~ 67 (173)
++.||.|+|.+... .+..... .............+++++++..++...+...|..+|.+....+...
T Consensus 181 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 181 ELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred eECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 36789999987431 1111111 1111222345778999999999999999999999999977777665
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHH
Q psy2141 68 SSPHRHKGYGFIEYETKQASNEAI 91 (173)
Q Consensus 68 ~~~g~~~g~afv~f~~~~~a~~a~ 91 (173)
..........++.+..........
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 261 KDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred CCCcccccccccchhHHHhhhhhh
Confidence 433334444444444444443333
No 146
>KOG4454|consensus
Probab=86.70 E-value=0.5 Score=36.03 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=64.9
Q ss_pred CCeEEEcC----CCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 32 YNRIYVAS----IHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 32 ~~~l~V~n----Lp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
..+++.|+ |...++++.+.+.|+.-|++..+++.++. +|+++.++|+.+........+++...+.+.--+++.+.
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~g 158 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIG 158 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcccc
Confidence 56888898 88889999999999999999999999985 68899999999999999999998888877665555544
Q ss_pred E
Q psy2141 108 R 108 (173)
Q Consensus 108 ~ 108 (173)
-
T Consensus 159 g 159 (267)
T KOG4454|consen 159 G 159 (267)
T ss_pred c
Confidence 3
No 147
>KOG4410|consensus
Probab=85.78 E-value=2.4 Score=33.67 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=37.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCH
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~ 84 (173)
....-||++||+.++.-.+|+..+.+-+. ..+.|.+. -+.|-||+.|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCC-CceeEeee----cCCcceeEecCCc
Confidence 33556999999999999999999998864 33334332 2467899999664
No 148
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=82.20 E-value=3.6 Score=25.50 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=44.6
Q ss_pred HHHHHHhhccC-ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 47 EDIKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 47 ~~L~~~F~~~G-~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
.+|++-|.++| ++..+.-+..+.++.....-+|+.....+... .|+=+.+.|+++.|......
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46777888888 77888777776666677788888876543333 45557788999998876543
No 149
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=81.40 E-value=4.9 Score=24.79 Aligned_cols=63 Identities=22% Similarity=0.310 Sum_probs=45.1
Q ss_pred HHHHHHhhccC-ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 47 EDIKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 47 ~~L~~~F~~~G-~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
++|.+.|...| .|..+.-+..+.++.....-||+.....+ ..+.|+=..+.+..|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCC
Confidence 46777777777 77888777776667777788898877655 23345557788899998876543
No 150
>KOG4676|consensus
Probab=81.32 E-value=0.53 Score=38.78 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=52.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCe
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQ 102 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~ 102 (173)
.++++|++|+..+...++.+.|..+|.|....+. .+...-+|-++|........|++. +|.++.-+
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~-~gre~k~q 216 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS-HGRERKRQ 216 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh-cchhhhhh
Confidence 3899999999999999999999999998876653 333455777999988888888855 66665533
No 151
>KOG2318|consensus
Probab=79.97 E-value=9.3 Score=33.33 Aligned_cols=79 Identities=14% Similarity=0.237 Sum_probs=58.5
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcc----CceeEEEEccCC----------CCCC----------------------
Q psy2141 30 KLYNRIYVASIHPD-LTEEDIKSVFEAF----GPIKYCKLQQGS----------SPHR---------------------- 72 (173)
Q Consensus 30 ~~~~~l~V~nLp~~-~~e~~L~~~F~~~----G~v~~~~i~~~~----------~~g~---------------------- 72 (173)
..+++|-|-||.|. +...+|..+|..| |.|.+|.|-... ..|-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45789999999997 8889999999876 578887753311 0111
Q ss_pred ---------------cceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 73 ---------------HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 73 ---------------~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..-||.|+|.+.+.|.+..+..+|.++...-..+..
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 123799999999999999999999888754444433
No 152
>KOG2193|consensus
Probab=76.52 E-value=0.094 Score=43.50 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
..+++-|.|+|....++.|..++..||.++.|..+.. ..-...--|+|.+.+.+..++..|+|..+....+++.|-.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 3566889999999999999999999999998865332 1112234578899999999999999999999999998854
No 153
>KOG4483|consensus
Probab=72.39 E-value=11 Score=31.53 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=45.2
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCc-eeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHh
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGP-IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~-v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 93 (173)
.+-.+.|=|.+.|.....++|...|+.|+. --+|+++-| -.+|..|.+...|..|+..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 344678889999999888999999999974 234444444 3799999999999999854
No 154
>KOG2891|consensus
Probab=72.09 E-value=5 Score=31.86 Aligned_cols=69 Identities=22% Similarity=0.419 Sum_probs=44.5
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhhccCceeEEEEcc-----CCCCCCc-----ceEEE---------E
Q psy2141 31 LYNRIYVASIHPD------------LTEEDIKSVFEAFGPIKYCKLQQ-----GSSPHRH-----KGYGF---------I 79 (173)
Q Consensus 31 ~~~~l~V~nLp~~------------~~e~~L~~~F~~~G~v~~~~i~~-----~~~~g~~-----~g~af---------v 79 (173)
.+.|||+.+||-. .+|+.|+..|..||.|..+.|.. ..-+|+. .||+| |
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3678999999842 35678999999999998876643 1233443 33332 3
Q ss_pred EEcCHHHHHHHHHhcCCcee
Q psy2141 80 EYETKQASNEAISSMNLFDL 99 (173)
Q Consensus 80 ~f~~~~~a~~a~~~l~g~~i 99 (173)
.|-..-....|+..|.|+.|
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 44444455667777777554
No 155
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=66.86 E-value=10 Score=30.33 Aligned_cols=83 Identities=10% Similarity=0.198 Sum_probs=58.4
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCC-------CCCCcceEEEEEEcCHHHHHHH----HHhcCC
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS-------SPHRHKGYGFIEYETKQASNEA----ISSMNL 96 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~-------~~g~~~g~afv~f~~~~~a~~a----~~~l~g 96 (173)
++-.+|.|.+.|+..+++-..+...|-+||+|+.+.++.+. ...+......+.|-+.+.|..- ++.|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 33457788899999999888888999999999999998874 1223345678899888776442 222222
Q ss_pred --ceeCCeEEEEEEee
Q psy2141 97 --FDLGGQYLRVGRAI 110 (173)
Q Consensus 97 --~~i~g~~l~v~~a~ 110 (173)
..+.-..|++.+..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 34566677776654
No 156
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.13 E-value=22 Score=21.49 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=15.6
Q ss_pred HHHHHHhhccCceeEEEEc
Q psy2141 47 EDIKSVFEAFGPIKYCKLQ 65 (173)
Q Consensus 47 ~~L~~~F~~~G~v~~~~i~ 65 (173)
.+|+++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998776553
No 157
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.88 E-value=8.7 Score=26.32 Aligned_cols=38 Identities=24% Similarity=0.624 Sum_probs=23.1
Q ss_pred CCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCH
Q psy2141 44 LTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84 (173)
Q Consensus 44 ~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~ 84 (173)
.+.+.|++.|+.|.+++ ++.++++ .-+.|++.|.|...
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKD 66 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SS
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCC
Confidence 35578999999998764 5555664 35689999999653
No 158
>KOG4019|consensus
Probab=58.31 E-value=11 Score=27.99 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=53.4
Q ss_pred CCeEEEcCCCCCCCH-----HHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCe-EEE
Q psy2141 32 YNRIYVASIHPDLTE-----EDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQ-YLR 105 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e-----~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~-~l~ 105 (173)
..++.+.+++..+.. .....+|.+|.+....++++. .+.-.|.|.+.+.|..|...+++..+.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 345666677655332 235567777777666666654 45678899999999999999999999988 777
Q ss_pred EEEeeC
Q psy2141 106 VGRAIT 111 (173)
Q Consensus 106 v~~a~~ 111 (173)
.-++.+
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 766654
No 159
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=46.65 E-value=26 Score=27.94 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=26.6
Q ss_pred EEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCC
Q psy2141 77 GFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNA 115 (173)
Q Consensus 77 afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~ 115 (173)
|||+|.+..+|+.+++.+.... .+.+++..|..+.+-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccc
Confidence 7999999999999998765544 244577666554443
No 160
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=44.86 E-value=51 Score=21.31 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=31.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEc
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYE 82 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~ 82 (173)
...-|||||++..+.|.-...+.+..+.-..+-+..+ ....||.|-.+.
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 3556999999998887766666655444333333333 226789998874
No 161
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=43.49 E-value=15 Score=23.88 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=20.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFE 54 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~ 54 (173)
...++|-|.|||....|++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4578999999999999999986543
No 162
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=39.90 E-value=15 Score=30.73 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=50.0
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHhhc--cCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHH
Q psy2141 31 LYNRIYVASIHPDLTEE--------DIKSVFEA--FGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~--------~L~~~F~~--~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~ 91 (173)
..+.+|+.+...+...+ ++...|.. .+++..+..-++......+|.-|++|...+.+++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 35678888777665544 89999988 678888888888778888999999999999999886
No 163
>KOG4008|consensus
Probab=38.39 E-value=28 Score=27.01 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=27.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYC 62 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~ 62 (173)
....+||+-|+|..++++.|.+..+..|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 346789999999999999999999988855443
No 164
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=38.37 E-value=59 Score=21.58 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=31.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcC
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET 83 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~ 83 (173)
...-||||+++..+.|.-...+-+.++.-.-+ +++. +..-.||.|-.+..
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~av-mv~~--~~~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVV-MAWA--TNTESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEE-EEEc--CCCCCCcEEEecCC
Confidence 34569999999888776655555555443333 3332 22334999988765
No 165
>KOG4365|consensus
Probab=33.43 E-value=7.8 Score=32.73 Aligned_cols=75 Identities=7% Similarity=-0.176 Sum_probs=55.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 35 l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
.|+..+|-..+++++.-+|..||-|..+.+.+.-+.+-.+-.+|+.... .++..++.-+--..+.|..+++..+.
T Consensus 6 ~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 6 KSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 4566778888999999999999999888777665556667778888765 45566766655566677777776654
No 166
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=32.71 E-value=35 Score=18.26 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=9.9
Q ss_pred CCCHHHHHHHhhccC
Q psy2141 43 DLTEEDIKSVFEAFG 57 (173)
Q Consensus 43 ~~~e~~L~~~F~~~G 57 (173)
++++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 578899999998765
No 167
>KOG0156|consensus
Probab=31.83 E-value=1e+02 Score=26.60 Aligned_cols=59 Identities=10% Similarity=0.225 Sum_probs=44.1
Q ss_pred EEcCCCCCCC---HHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q psy2141 36 YVASIHPDLT---EEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104 (173)
Q Consensus 36 ~V~nLp~~~~---e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l 104 (173)
.||||+.-.. ...+.++=.+||+|-.+++-. .-.|...+.+.|+.++.. ++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 4788886433 355666667899999888732 247888999999999966 7888888775
No 168
>KOG2295|consensus
Probab=30.75 E-value=5.9 Score=34.34 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=54.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQY 103 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~ 103 (173)
...++|++.|++++++-.+|..+...+--+..+.+..+..-.....++.|.|.-.-....|+.+||+..+....
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 34678999999999999999999998866666655443222333456778888777777888888886655443
No 169
>KOG4213|consensus
Probab=28.95 E-value=76 Score=23.67 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=37.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCC--CcceEEEEEEcCHHHHHHHHHh
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH--RHKGYGFIEYETKQASNEAISS 93 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g--~~~g~afv~f~~~~~a~~a~~~ 93 (173)
...+++|.. +.+..-++|.++-+ |.+..+.+-+.. .+ ..+|--||+|.+.+.+.+.++.
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 446777765 22222234444444 678877765542 33 4578889999999999887754
No 170
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=28.33 E-value=58 Score=25.64 Aligned_cols=33 Identities=15% Similarity=0.003 Sum_probs=24.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEE
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL 64 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i 64 (173)
.....|+|||++++..-+..++...-.+....+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 345669999999999999988876544434333
No 171
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=25.89 E-value=1.7e+02 Score=21.96 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=36.5
Q ss_pred CCHHHHHHHhhccCc---eeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC
Q psy2141 44 LTEEDIKSVFEAFGP---IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG 100 (173)
Q Consensus 44 ~~e~~L~~~F~~~G~---v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~ 100 (173)
.+.+++++.....|. |.+.+++.. |+.|+-+...-.+.++|..+.+.|=|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~G---gRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAG---GRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSS---TTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeec---CcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 356777777766553 566666654 455555555567889999999888888776
No 172
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=24.90 E-value=65 Score=25.03 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=20.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFE 54 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~ 54 (173)
...-+.|||||+.++..-|..++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 456789999999999999998887
No 173
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=24.86 E-value=1.1e+02 Score=19.89 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=28.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc-cCceeEEEEccCCCCCCcceEEEEEEcC
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEA-FGPIKYCKLQQGSSPHRHKGYGFIEYET 83 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~-~G~v~~~~i~~~~~~g~~~g~afv~f~~ 83 (173)
...-||||+++..+.|.-...+-+. .+.- .+-+.+. +..-.||.|-++..
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 3456999999988776554444443 2332 2333332 23346788887754
No 174
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.26 E-value=1e+02 Score=18.78 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=22.1
Q ss_pred eEEEEEEcCHHHHHHHHHhcCCceeCCe
Q psy2141 75 GYGFIEYETKQASNEAISSMNLFDLGGQ 102 (173)
Q Consensus 75 g~afv~f~~~~~a~~a~~~l~g~~i~g~ 102 (173)
.+.++.|.+..+|-++-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3679999999999999988876555443
No 175
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.42 E-value=1.4e+02 Score=18.82 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.0
Q ss_pred cceEEEEEEcCHHHHHHHHHhcCC
Q psy2141 73 HKGYGFIEYETKQASNEAISSMNL 96 (173)
Q Consensus 73 ~~g~afv~f~~~~~a~~a~~~l~g 96 (173)
.+||-||+=.+..+..+|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 699999999999999999987765
No 176
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=23.04 E-value=32 Score=28.15 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=37.9
Q ss_pred HHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCc
Q psy2141 46 EEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLF 97 (173)
Q Consensus 46 e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~ 97 (173)
...+.+++.+.|.|..-.+.+- .+-|.+|+..-..++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3677888888888776555443 25789999999999999999999874
No 177
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.70 E-value=32 Score=21.16 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=16.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHH
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSV 52 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~ 52 (173)
...+++|||.+|..+-++.=..+
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~ 47 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSW 47 (67)
T ss_pred HcCceEEECCCChHHHHcCcchH
Confidence 35789999999988766543333
No 178
>KOG1295|consensus
Probab=20.75 E-value=1.3e+02 Score=25.08 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=46.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCc-eeEEEEccCCC--CCCcceEEEEEEcCHHHHHHHHHhcCCceeC
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGP-IKYCKLQQGSS--PHRHKGYGFIEYETKQASNEAISSMNLFDLG 100 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~-v~~~~i~~~~~--~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~ 100 (173)
....+.|.+||...++.+|.+....+-. +....+..... .....+.++|.|...++...-.+..+|+.+.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3567889999999999998887776531 11122221100 1112567899999999988877777776543
No 179
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.51 E-value=99 Score=16.30 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.2
Q ss_pred CCCHHHHHHHhhccCce
Q psy2141 43 DLTEEDIKSVFEAFGPI 59 (173)
Q Consensus 43 ~~~e~~L~~~F~~~G~v 59 (173)
.+++++|+..+..+|-+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 47889999999998843
Done!