Query psy2141
Match_columns 173
No_of_seqs 183 out of 1802
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 17:05:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 4.2E-24 1.4E-28 142.8 11.4 82 30-111 17-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 8.8E-23 3E-27 138.9 11.5 83 30-112 4-86 (110)
3 2lxi_A RNA-binding protein 10; 99.9 2.5E-23 8.6E-28 136.9 8.1 84 32-115 1-86 (91)
4 2qfj_A FBP-interacting repress 99.9 1.6E-22 5.4E-27 151.5 12.1 118 1-118 94-211 (216)
5 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.9E-22 6.5E-27 131.0 10.9 84 30-113 4-87 (87)
6 2lkz_A RNA-binding protein 5; 99.9 5E-23 1.7E-27 136.6 7.9 82 30-111 7-94 (95)
7 3md1_A Nuclear and cytoplasmic 99.9 4E-22 1.4E-26 128.4 11.1 81 33-113 2-82 (83)
8 2dnz_A Probable RNA-binding pr 99.9 5.4E-22 1.8E-26 131.0 11.6 89 30-118 3-91 (95)
9 2dgo_A Cytotoxic granule-assoc 99.9 1.1E-21 3.9E-26 133.9 13.4 87 30-116 13-99 (115)
10 1whw_A Hypothetical protein ri 99.9 7.7E-22 2.6E-26 131.3 12.1 87 30-116 6-92 (99)
11 2fy1_A RNA-binding motif prote 99.9 6.9E-22 2.4E-26 135.6 12.0 89 29-118 4-92 (116)
12 2x1f_A MRNA 3'-END-processing 99.9 6.1E-22 2.1E-26 131.2 11.1 84 31-114 1-84 (96)
13 2dgs_A DAZ-associated protein 99.9 8.1E-22 2.8E-26 131.2 11.6 86 30-116 8-93 (99)
14 2cq0_A Eukaryotic translation 99.9 6.2E-22 2.1E-26 132.7 10.7 87 30-116 13-99 (103)
15 2cpz_A CUG triplet repeat RNA- 99.9 9.7E-22 3.3E-26 134.4 11.6 88 29-116 22-109 (115)
16 1x5t_A Splicing factor 3B subu 99.9 1.2E-21 4.2E-26 129.5 11.5 87 30-116 3-90 (96)
17 2cqb_A Peptidyl-prolyl CIS-tra 99.9 8.4E-22 2.9E-26 131.8 10.7 87 30-116 10-96 (102)
18 1x5s_A Cold-inducible RNA-bind 99.9 9E-22 3.1E-26 131.6 10.9 88 30-117 10-97 (102)
19 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5.8E-22 2E-26 128.2 9.6 81 30-110 5-85 (85)
20 3p5t_L Cleavage and polyadenyl 99.9 8.9E-23 3E-27 133.8 5.8 83 33-115 2-86 (90)
21 2do4_A Squamous cell carcinoma 99.9 1.4E-21 4.9E-26 130.3 11.2 84 30-114 15-98 (100)
22 2kt5_A RNA and export factor-b 99.9 2.9E-21 9.8E-26 133.7 13.1 86 29-115 32-117 (124)
23 1x5u_A Splicing factor 3B subu 99.9 1.2E-21 3.9E-26 131.8 10.7 87 30-116 13-99 (105)
24 1u6f_A Tcubp1, RNA-binding pro 99.9 3.2E-21 1.1E-25 135.9 13.4 91 28-118 38-128 (139)
25 2m2b_A RNA-binding protein 10; 99.9 1.6E-22 5.4E-27 141.5 6.4 88 30-118 21-114 (131)
26 2dnm_A SRP46 splicing factor; 99.9 8.4E-22 2.9E-26 132.1 9.6 87 30-116 11-97 (103)
27 2cqd_A RNA-binding region cont 99.9 3.7E-21 1.3E-25 131.6 12.9 85 30-115 15-99 (116)
28 2e5h_A Zinc finger CCHC-type a 99.9 1.6E-21 5.6E-26 128.4 10.7 81 30-110 14-94 (94)
29 2do0_A HnRNP M, heterogeneous 99.9 4.8E-21 1.7E-25 130.5 13.3 83 30-113 13-95 (114)
30 1p27_B RNA-binding protein 8A; 99.9 1.1E-21 3.9E-26 132.0 10.0 85 30-114 21-105 (106)
31 1x4h_A RNA-binding protein 28; 99.9 1.9E-21 6.6E-26 131.8 11.1 87 30-116 13-105 (111)
32 2cpf_A RNA binding motif prote 99.9 1.8E-21 6E-26 129.3 10.2 87 30-116 3-92 (98)
33 2cqc_A Arginine/serine-rich sp 99.9 1.4E-21 4.9E-26 128.9 9.6 82 30-111 13-94 (95)
34 4f25_A Polyadenylate-binding p 99.9 1.7E-21 6E-26 133.3 10.3 83 31-115 4-86 (115)
35 2jrs_A RNA-binding protein 39; 99.9 6.6E-22 2.3E-26 134.1 8.0 87 27-113 21-107 (108)
36 1oo0_B CG8781-PA, drosophila Y 99.9 2.1E-21 7.2E-26 131.6 10.4 85 30-114 24-108 (110)
37 2cph_A RNA binding motif prote 99.9 2.9E-21 9.7E-26 130.2 11.0 88 29-116 12-101 (107)
38 2dgp_A Bruno-like 4, RNA bindi 99.9 1.6E-21 5.6E-26 131.2 9.8 87 30-116 11-100 (106)
39 2div_A TRNA selenocysteine ass 99.9 1.6E-21 5.5E-26 129.7 9.7 84 30-113 7-95 (99)
40 2rs2_A Musashi-1, RNA-binding 99.9 3.5E-21 1.2E-25 130.6 11.4 92 22-114 15-106 (109)
41 2cpe_A RNA-binding protein EWS 99.9 2.6E-21 8.7E-26 131.8 10.7 88 29-116 12-107 (113)
42 2khc_A Testis-specific RNP-typ 99.9 1.3E-21 4.4E-26 134.2 9.1 83 28-110 36-118 (118)
43 2la6_A RNA-binding protein FUS 99.9 1.5E-21 5.2E-26 130.0 9.1 81 30-110 11-99 (99)
44 2dhg_A TRNA selenocysteine ass 99.9 1.9E-21 6.5E-26 130.5 9.6 86 30-116 7-94 (104)
45 2dnh_A Bruno-like 5, RNA bindi 99.9 3.2E-21 1.1E-25 129.6 10.6 86 30-116 13-101 (105)
46 2dng_A Eukaryotic translation 99.9 6.2E-21 2.1E-25 127.9 11.9 85 30-116 13-97 (103)
47 2jwn_A Embryonic polyadenylate 99.9 3.3E-21 1.1E-25 133.3 10.8 86 29-115 33-118 (124)
48 3ucg_A Polyadenylate-binding p 99.9 4.4E-21 1.5E-25 125.0 10.5 81 31-112 5-85 (89)
49 4a8x_A RNA-binding protein wit 99.9 3E-21 1E-25 125.5 9.6 83 31-113 3-86 (88)
50 2dgx_A KIAA0430 protein; RRM d 99.9 5.8E-21 2E-25 126.6 11.1 83 30-115 7-93 (96)
51 2d9p_A Polyadenylate-binding p 99.9 5.5E-21 1.9E-25 128.1 10.9 86 30-117 13-98 (103)
52 3ns6_A Eukaryotic translation 99.9 3.3E-22 1.1E-26 133.7 4.9 81 31-111 5-92 (100)
53 3s7r_A Heterogeneous nuclear r 99.9 7.1E-21 2.4E-25 123.7 11.0 80 29-109 8-87 (87)
54 1wi8_A EIF-4B, eukaryotic tran 99.9 6.6E-21 2.3E-25 127.9 11.2 85 30-116 13-98 (104)
55 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.4E-20 4.7E-25 126.1 12.6 86 29-116 12-97 (103)
56 3n9u_C Cleavage and polyadenyl 99.9 4.4E-21 1.5E-25 138.2 10.7 81 31-111 54-136 (156)
57 2cq4_A RNA binding motif prote 99.9 1.6E-21 5.5E-26 133.0 7.8 85 28-113 21-105 (114)
58 2cq3_A RNA-binding protein 9; 99.8 2E-20 6.8E-25 125.3 12.6 86 30-117 13-98 (103)
59 2ywk_A Putative RNA-binding pr 99.8 5.2E-21 1.8E-25 126.2 9.4 81 30-111 14-94 (95)
60 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-20 5.4E-25 134.9 12.7 88 29-116 36-123 (156)
61 1x4b_A Heterogeneous nuclear r 99.8 7.9E-21 2.7E-25 130.0 10.4 86 30-116 25-110 (116)
62 2kxn_B Transformer-2 protein h 99.8 2.3E-21 7.9E-26 135.4 7.8 85 29-113 43-127 (129)
63 3ulh_A THO complex subunit 4; 99.8 9.9E-21 3.4E-25 127.6 10.7 81 29-110 26-106 (107)
64 2dh8_A DAZ-associated protein 99.8 5.4E-21 1.8E-25 128.5 9.0 86 30-116 14-99 (105)
65 2dgv_A HnRNP M, heterogeneous 99.8 9.9E-21 3.4E-25 124.2 10.0 84 30-115 6-89 (92)
66 2cqp_A RNA-binding protein 12; 99.8 3.6E-21 1.2E-25 127.8 8.0 84 30-113 13-96 (98)
67 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.7E-21 9.3E-26 129.1 7.0 83 29-113 16-99 (100)
68 3ex7_B RNA-binding protein 8A; 99.8 7.2E-21 2.5E-25 131.9 9.3 87 30-116 20-106 (126)
69 2dgw_A Probable RNA-binding pr 99.8 2.7E-20 9.3E-25 121.9 11.5 82 30-114 8-89 (91)
70 2kn4_A Immunoglobulin G-bindin 99.8 1.9E-20 6.6E-25 134.5 11.7 86 30-115 68-153 (158)
71 2dis_A Unnamed protein product 99.8 2E-20 6.8E-25 126.5 11.1 86 30-115 6-95 (109)
72 2cpi_A CCR4-NOT transcription 99.8 1.2E-20 4.2E-25 128.3 9.7 87 30-116 13-105 (111)
73 1s79_A Lupus LA protein; RRM, 99.8 4.7E-21 1.6E-25 128.9 7.5 80 30-111 9-88 (103)
74 3md3_A Nuclear and cytoplasmic 99.8 2E-20 7E-25 134.1 11.4 100 2-110 66-165 (166)
75 1p1t_A Cleavage stimulation fa 99.8 5.5E-21 1.9E-25 128.1 7.8 83 31-113 7-89 (104)
76 1x4e_A RNA binding motif, sing 99.8 1.3E-21 4.3E-26 126.7 4.5 81 30-110 3-83 (85)
77 2cqg_A TDP-43, TAR DNA-binding 99.8 3.9E-20 1.4E-24 123.8 12.0 85 30-116 13-97 (103)
78 2mss_A Protein (musashi1); RNA 99.8 4.6E-21 1.6E-25 121.2 6.9 75 34-109 1-75 (75)
79 1x4a_A Splicing factor, argini 99.8 3.4E-20 1.2E-24 125.4 11.5 84 30-116 20-103 (109)
80 2err_A Ataxin-2-binding protei 99.8 1E-20 3.5E-25 128.3 8.9 84 27-112 24-107 (109)
81 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-20 4.3E-25 126.9 9.0 80 30-115 14-95 (105)
82 2ek1_A RNA-binding protein 12; 99.8 6E-21 2E-25 125.9 7.3 82 30-111 13-94 (95)
83 2ki2_A SS-DNA binding protein 99.8 2.2E-21 7.6E-26 126.9 4.9 82 33-115 2-83 (90)
84 3r27_A HnRNP L, heterogeneous 99.8 2.3E-20 7.9E-25 124.4 9.7 78 29-112 18-97 (100)
85 2g4b_A Splicing factor U2AF 65 99.8 2.4E-20 8.3E-25 134.8 10.6 97 2-109 75-171 (172)
86 2yh0_A Splicing factor U2AF 65 99.8 2.6E-20 9E-25 137.6 10.9 113 2-114 75-196 (198)
87 2fc9_A NCL protein; structure 99.8 5.1E-20 1.7E-24 122.9 11.0 83 30-116 13-95 (101)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.8E-20 1.3E-24 130.1 10.7 82 28-109 59-140 (140)
89 1x4d_A Matrin 3; structural ge 99.8 1.7E-20 5.7E-25 125.9 8.1 80 30-115 13-95 (102)
90 2lea_A Serine/arginine-rich sp 99.8 9.7E-21 3.3E-25 133.2 7.3 86 30-115 45-130 (135)
91 1why_A Hypothetical protein ri 99.8 7.1E-20 2.4E-24 121.4 11.0 79 30-114 15-95 (97)
92 1uaw_A Mouse-musashi-1; RNP-ty 99.8 7.9E-21 2.7E-25 120.6 6.1 76 33-109 1-76 (77)
93 2wbr_A GW182, gawky, LD47780P; 99.8 3.7E-20 1.3E-24 119.9 9.0 74 31-110 6-79 (89)
94 1x5o_A RNA binding motif, sing 99.8 4.2E-20 1.4E-24 125.9 9.7 82 30-112 23-112 (114)
95 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6E-20 2.1E-24 133.1 10.9 86 30-115 70-155 (165)
96 2lcw_A RNA-binding protein FUS 99.7 6.4E-22 2.2E-26 135.5 0.0 91 28-118 3-101 (116)
97 2cpy_A RNA-binding protein 12; 99.8 3.9E-20 1.3E-24 126.3 8.8 81 30-112 13-94 (114)
98 2nlw_A Eukaryotic translation 99.8 2.7E-20 9.3E-25 125.3 7.7 81 30-112 13-100 (105)
99 1x4g_A Nucleolysin TIAR; struc 99.8 3E-19 1E-23 120.8 12.9 85 26-116 19-103 (109)
100 2fc8_A NCL protein; structure 99.8 1.1E-19 3.8E-24 121.4 10.6 84 30-116 13-96 (102)
101 2a3j_A U1 small nuclear ribonu 99.8 5E-20 1.7E-24 128.3 9.1 83 29-114 26-112 (127)
102 2cq1_A PTB-like protein L; RRM 99.8 1.4E-19 4.9E-24 121.2 11.0 80 30-115 13-94 (101)
103 2db1_A Heterogeneous nuclear r 99.8 7E-20 2.4E-24 125.9 9.7 82 29-112 14-98 (118)
104 2i2y_A Fusion protein consists 99.8 2.3E-20 7.7E-25 133.2 7.4 80 29-113 70-149 (150)
105 2cjk_A Nuclear polyadenylated 99.8 2.1E-20 7.1E-25 134.6 7.2 99 2-112 68-166 (167)
106 2dnq_A RNA-binding protein 4B; 99.8 1.1E-19 3.7E-24 118.9 9.9 79 30-116 6-84 (90)
107 1wex_A Hypothetical protein (r 99.8 9.9E-20 3.4E-24 122.6 9.8 80 30-115 13-94 (104)
108 1wf1_A RNA-binding protein RAL 99.8 2.1E-19 7.2E-24 121.8 11.2 97 3-115 6-103 (110)
109 1wez_A HnRNP H', FTP-3, hetero 99.8 8.2E-20 2.8E-24 122.5 9.0 83 30-115 13-95 (102)
110 2jvr_A Nucleolar protein 3; RN 99.8 8.5E-20 2.9E-24 124.2 9.2 82 28-113 24-106 (111)
111 1x4c_A Splicing factor, argini 99.8 5E-19 1.7E-23 119.7 12.9 80 30-116 13-97 (108)
112 3q2s_C Cleavage and polyadenyl 99.8 4.7E-20 1.6E-24 140.5 8.6 81 31-111 67-149 (229)
113 1wg5_A Heterogeneous nuclear r 99.8 1.5E-19 5.3E-24 121.4 10.1 82 30-113 13-95 (104)
114 2ad9_A Polypyrimidine tract-bi 99.8 8.7E-20 3E-24 125.5 8.9 81 29-115 28-110 (119)
115 1nu4_A U1A RNA binding domain; 99.8 6E-20 2E-24 121.5 7.9 83 29-114 5-91 (97)
116 1l3k_A Heterogeneous nuclear r 99.8 1.6E-19 5.3E-24 133.2 10.8 109 2-116 79-187 (196)
117 2hgl_A HNRPF protein, heteroge 99.8 5.7E-20 2E-24 129.4 8.0 81 29-111 41-124 (136)
118 1fj7_A Nucleolin RBD1, protein 99.8 5.4E-21 1.9E-25 127.6 2.6 84 30-115 15-98 (101)
119 2krb_A Eukaryotic translation 99.8 3.2E-20 1.1E-24 119.2 6.2 73 32-106 1-80 (81)
120 2cpx_A Hypothetical protein FL 99.8 3.2E-20 1.1E-24 126.6 6.5 87 30-116 23-109 (115)
121 2dgu_A Heterogeneous nuclear r 99.8 6.3E-19 2.2E-23 118.1 12.3 81 30-118 9-89 (103)
122 2xnq_A Nuclear polyadenylated 99.8 3.6E-19 1.2E-23 118.2 11.0 79 27-113 17-96 (97)
123 1iqt_A AUF1, heterogeneous nuc 99.8 3.4E-20 1.2E-24 117.1 5.5 75 34-109 1-75 (75)
124 4f02_A Polyadenylate-binding p 99.8 3E-19 1E-23 134.2 11.6 83 30-112 13-95 (213)
125 2cpj_A Non-POU domain-containi 99.8 1.4E-19 4.8E-24 120.3 8.7 81 30-116 13-93 (99)
126 2ytc_A PRE-mRNA-splicing facto 99.8 2E-19 7E-24 116.1 9.1 75 30-110 10-85 (85)
127 2jvo_A Nucleolar protein 3; nu 99.8 1.9E-19 6.4E-24 121.9 9.3 81 26-114 25-105 (108)
128 1x4f_A Matrin 3; structural ge 99.8 6.8E-20 2.3E-24 124.7 7.0 83 28-116 21-106 (112)
129 2dgt_A RNA-binding protein 30; 99.8 5.9E-19 2E-23 115.8 11.3 80 30-117 8-87 (92)
130 2dnp_A RNA-binding protein 14; 99.8 5E-19 1.7E-23 115.7 10.6 78 30-115 7-84 (90)
131 2la4_A Nuclear and cytoplasmic 99.8 3.3E-19 1.1E-23 118.9 9.9 76 30-111 25-100 (101)
132 2xs2_A Deleted in azoospermia- 99.8 6.3E-20 2.2E-24 122.6 6.3 83 30-115 7-89 (102)
133 1b7f_A Protein (SXL-lethal pro 99.8 3.1E-19 1.1E-23 128.4 10.4 97 2-109 70-168 (168)
134 2hvz_A Splicing factor, argini 99.8 2.2E-19 7.4E-24 119.8 8.8 79 33-116 1-79 (101)
135 4f02_A Polyadenylate-binding p 99.8 1.2E-19 4.2E-24 136.4 8.4 100 2-112 82-181 (213)
136 1fjc_A Nucleolin RBD2, protein 99.8 1.4E-19 4.9E-24 119.6 7.6 81 30-115 14-94 (96)
137 1fje_B Nucleolin RBD12, protei 99.8 2.8E-19 9.5E-24 129.8 9.8 98 2-113 78-175 (175)
138 2cpd_A Apobec-1 stimulating pr 99.8 8.8E-19 3E-23 116.5 11.4 80 29-116 12-93 (99)
139 2e5j_A Methenyltetrahydrofolat 99.8 1.7E-19 5.8E-24 119.6 7.8 81 29-114 16-96 (97)
140 1wel_A RNA-binding protein 12; 99.8 5.7E-20 2E-24 127.2 5.6 81 30-111 23-103 (124)
141 2lmi_A GRSF-1, G-rich sequence 99.8 4.1E-20 1.4E-24 124.9 4.7 81 29-111 8-91 (107)
142 3lqv_A PRE-mRNA branch site pr 99.8 3.1E-19 1.1E-23 121.7 9.0 81 30-113 6-86 (115)
143 1fxl_A Paraneoplastic encephal 99.8 9.1E-19 3.1E-23 125.6 11.6 84 31-114 1-84 (167)
144 1b7f_A Protein (SXL-lethal pro 99.8 6.9E-19 2.4E-23 126.6 10.5 85 31-115 2-86 (168)
145 1fxl_A Paraneoplastic encephal 99.8 6.9E-19 2.3E-23 126.2 10.5 97 2-109 69-167 (167)
146 2kvi_A Nuclear polyadenylated 99.8 3.6E-19 1.2E-23 117.8 8.1 80 29-116 7-87 (96)
147 1whx_A Hypothetical protein ri 99.8 3.5E-19 1.2E-23 121.1 7.8 77 30-112 8-84 (111)
148 2dnn_A RNA-binding protein 12; 99.8 1.3E-18 4.3E-23 118.1 10.3 77 32-111 16-92 (109)
149 2cq2_A Hypothetical protein LO 99.8 7.8E-19 2.7E-23 119.7 9.1 82 29-116 22-110 (114)
150 2cqh_A IGF-II mRNA-binding pro 99.8 7E-19 2.4E-23 115.6 8.5 80 30-116 6-87 (93)
151 2j8a_A Histone-lysine N-methyl 99.8 7.5E-19 2.6E-23 121.2 8.8 78 33-110 3-94 (136)
152 2e5g_A U6 snRNA-specific termi 99.8 1.7E-18 5.8E-23 114.1 10.2 80 30-115 6-85 (94)
153 2f3j_A RNA and export factor b 99.8 8.5E-19 2.9E-23 128.6 9.2 82 30-112 86-167 (177)
154 3egn_A RNA-binding protein 40; 99.8 1.7E-19 5.9E-24 127.7 5.1 85 29-113 42-131 (143)
155 2ghp_A U4/U6 snRNA-associated 99.8 1.4E-18 4.6E-23 136.0 10.6 107 2-113 184-292 (292)
156 2dha_A FLJ20171 protein; RRM d 99.8 1.5E-18 5E-23 120.2 9.4 80 29-110 20-103 (123)
157 1sjr_A Polypyrimidine tract-bi 99.8 3.7E-18 1.3E-22 123.1 11.7 79 32-114 46-126 (164)
158 1wg1_A KIAA1579 protein, homol 99.8 2E-18 6.9E-23 112.4 8.7 76 30-112 3-78 (88)
159 3smz_A Protein raver-1, ribonu 99.8 2.3E-18 7.7E-23 134.3 10.6 104 2-114 162-266 (284)
160 2e44_A Insulin-like growth fac 99.8 1.5E-18 5.3E-23 114.5 8.2 79 30-112 13-92 (96)
161 2hgn_A Heterogeneous nuclear r 99.8 3.1E-19 1.1E-23 126.0 5.1 83 29-114 43-125 (139)
162 1x5p_A Negative elongation fac 99.8 5.6E-18 1.9E-22 112.2 10.5 79 30-116 13-91 (97)
163 3pgw_S U1-70K; protein-RNA com 99.8 3.4E-18 1.1E-22 141.4 11.5 84 31-114 101-184 (437)
164 1l3k_A Heterogeneous nuclear r 99.8 3.5E-18 1.2E-22 125.9 10.2 83 30-113 11-93 (196)
165 3zzy_A Polypyrimidine tract-bi 99.8 7.7E-18 2.6E-22 117.2 11.0 81 31-116 27-110 (130)
166 3d2w_A TAR DNA-binding protein 99.8 5.1E-18 1.7E-22 111.0 9.5 77 29-114 8-86 (89)
167 2dnl_A Cytoplasmic polyadenyla 99.8 7.3E-18 2.5E-22 115.0 10.7 76 30-108 6-84 (114)
168 2hgm_A HNRPF protein, heteroge 99.8 1.4E-18 4.8E-23 120.7 7.0 80 29-111 39-120 (126)
169 3md3_A Nuclear and cytoplasmic 99.8 8.3E-18 2.8E-22 120.4 10.9 81 33-114 1-81 (166)
170 2diu_A KIAA0430 protein; struc 99.8 2.8E-18 9.5E-23 112.2 7.6 79 30-118 6-90 (96)
171 3tyt_A Heterogeneous nuclear r 99.7 7.3E-18 2.5E-22 126.3 10.4 77 31-112 3-80 (205)
172 3smz_A Protein raver-1, ribonu 99.7 1E-17 3.5E-22 130.6 11.3 96 2-114 82-177 (284)
173 2qfj_A FBP-interacting repress 99.7 4.1E-18 1.4E-22 127.3 8.4 85 28-112 24-108 (216)
174 3beg_B Splicing factor, argini 99.7 6.3E-18 2.2E-22 115.5 8.6 77 30-113 14-95 (115)
175 2hzc_A Splicing factor U2AF 65 99.7 7.2E-18 2.5E-22 109.2 8.2 72 30-108 4-86 (87)
176 2voo_A Lupus LA protein; RNA-b 99.7 9.5E-18 3.2E-22 124.6 9.5 81 29-111 106-186 (193)
177 2bz2_A Negative elongation fac 99.7 1E-17 3.4E-22 115.6 8.5 79 29-115 36-114 (121)
178 1wf0_A TDP-43, TAR DNA-binding 99.7 9.4E-18 3.2E-22 109.1 7.8 80 30-116 3-82 (88)
179 3nmr_A Cugbp ELAV-like family 99.7 1.5E-17 5.1E-22 120.2 9.6 79 30-109 93-174 (175)
180 3pgw_A U1-A; protein-RNA compl 99.7 2E-17 7E-22 128.7 10.7 76 30-110 205-281 (282)
181 2e5i_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 113.2 10.2 76 34-115 27-105 (124)
182 2adc_A Polypyrimidine tract-bi 99.7 4.4E-17 1.5E-21 123.6 11.1 78 30-112 149-228 (229)
183 2pe8_A Splicing factor 45; RRM 99.7 8.3E-17 2.8E-21 108.4 11.2 82 30-111 6-93 (105)
184 3pgw_A U1-A; protein-RNA compl 99.7 4.4E-17 1.5E-21 126.8 11.2 84 28-114 5-92 (282)
185 2cjk_A Nuclear polyadenylated 99.7 1.7E-17 5.8E-22 119.2 8.1 79 31-111 2-80 (167)
186 1qm9_A Polypyrimidine tract-bi 99.7 2.6E-17 8.9E-22 121.8 8.6 78 30-112 118-197 (198)
187 3nmr_A Cugbp ELAV-like family 99.7 3E-17 1E-21 118.5 8.7 84 31-114 2-90 (175)
188 3u1l_A PRE-mRNA-splicing facto 99.7 2.2E-17 7.4E-22 126.2 7.3 82 29-116 131-233 (240)
189 3tyt_A Heterogeneous nuclear r 99.7 4E-17 1.4E-21 122.3 8.4 78 30-109 121-204 (205)
190 2ghp_A U4/U6 snRNA-associated 99.7 9.8E-17 3.3E-21 125.4 8.9 83 31-114 116-199 (292)
191 3sde_A Paraspeckle component 1 99.7 1.3E-16 4.4E-21 123.3 9.2 93 2-112 83-179 (261)
192 2adc_A Polypyrimidine tract-bi 99.7 2.1E-16 7.2E-21 119.9 9.8 79 29-112 31-110 (229)
193 1fje_B Nucleolin RBD12, protei 99.7 3.9E-17 1.3E-21 118.4 3.7 84 29-114 10-93 (175)
194 1qm9_A Polypyrimidine tract-bi 99.6 3.1E-16 1.1E-20 115.9 7.8 78 31-113 2-80 (198)
195 2dit_A HIV TAT specific factor 99.6 2.7E-15 9.3E-20 101.8 10.8 82 30-115 13-105 (112)
196 3sde_A Paraspeckle component 1 99.6 1.3E-15 4.6E-20 117.6 10.5 76 30-111 20-95 (261)
197 3v4m_A Splicing factor U2AF 65 99.6 2.3E-15 7.8E-20 101.3 8.9 82 30-111 3-96 (105)
198 2g4b_A Splicing factor U2AF 65 99.6 2.7E-15 9.2E-20 108.1 9.2 75 31-112 3-88 (172)
199 1jmt_A Splicing factor U2AF 35 99.6 6.7E-16 2.3E-20 103.7 4.5 72 37-109 20-103 (104)
200 2yh0_A Splicing factor U2AF 65 99.6 6.1E-15 2.1E-19 108.5 9.4 75 31-112 3-88 (198)
201 3ue2_A Poly(U)-binding-splicin 99.6 9.1E-15 3.1E-19 100.3 8.6 82 30-111 18-108 (118)
202 3tht_A Alkylated DNA repair pr 99.5 2.5E-14 8.6E-19 114.5 8.7 76 29-110 15-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 6.1E-14 2.1E-18 93.4 8.8 68 42-116 27-94 (100)
204 3s6e_A RNA-binding protein 39; 99.4 1E-12 3.6E-17 89.4 9.7 78 30-111 5-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 1.4E-11 4.6E-16 79.8 8.8 73 30-111 5-85 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 5.4E-11 1.9E-15 81.4 9.0 75 29-109 15-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.3E-10 4.3E-15 75.7 6.7 74 28-110 11-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 2.4E-10 8.3E-15 85.9 8.0 67 44-110 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 2.4E-08 8.2E-13 66.3 9.0 72 31-108 20-96 (117)
210 1wey_A Calcipressin 1; structu 98.1 2.4E-05 8.3E-10 51.5 8.1 77 31-113 4-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.7 0.0015 5E-08 42.9 11.6 72 31-111 7-83 (104)
212 1uw4_A UPF3X; nonsense mediate 97.6 0.00046 1.6E-08 44.5 8.0 69 33-101 2-72 (91)
213 1whv_A Poly(A)-specific ribonu 97.2 0.0011 3.8E-08 43.0 6.3 54 32-94 16-69 (100)
214 1wwh_A Nucleoporin 35, nucleop 97.1 0.0029 1E-07 42.6 7.5 71 31-109 23-94 (119)
215 3ctr_A Poly(A)-specific ribonu 96.9 0.0016 5.6E-08 42.3 4.9 54 33-95 7-60 (101)
216 2l08_A Regulator of nonsense t 96.8 0.0047 1.6E-07 40.1 6.6 70 32-101 9-80 (97)
217 3pq1_A Poly(A) RNA polymerase; 96.3 0.0025 8.6E-08 52.7 3.5 58 30-93 51-108 (464)
218 3p3d_A Nucleoporin 53; structu 96.2 0.0082 2.8E-07 41.0 5.2 78 31-110 6-97 (132)
219 4f25_A Polyadenylate-binding p 96.1 0.00078 2.7E-08 44.9 -0.4 44 2-48 70-113 (115)
220 2kn4_A Immunoglobulin G-bindin 96.1 0.0044 1.5E-07 43.3 3.5 35 61-97 2-36 (158)
221 2i2y_A Fusion protein consists 95.4 0.004 1.4E-07 43.2 1.0 41 70-111 9-50 (150)
222 3d45_A Poly(A)-specific ribonu 89.0 1.2 4.2E-05 37.1 7.3 56 32-96 440-495 (507)
223 2hvz_A Splicing factor, argini 86.2 0.14 4.8E-06 32.5 0.0 40 1-41 61-100 (101)
224 2g0c_A ATP-dependent RNA helic 73.5 9.8 0.00034 22.5 5.4 58 44-110 13-75 (76)
225 3ts2_A Protein LIN-28 homolog 39.4 5.7 0.00019 27.4 -0.2 28 47-82 2-29 (148)
226 4e8u_A Putative uncharacterize 36.2 85 0.0029 22.1 5.5 38 44-84 33-72 (172)
227 3fut_A Dimethyladenosine trans 27.1 57 0.002 24.5 3.6 32 32-64 110-141 (271)
228 3mfb_A Uncharacterized protein 24.9 1.3E+02 0.0043 20.9 4.7 37 44-80 3-42 (157)
229 3uzu_A Ribosomal RNA small sub 23.5 36 0.0012 25.7 1.9 32 33-64 115-146 (279)
230 1i4w_A Mitochondrial replicati 20.2 75 0.0026 25.0 3.1 22 34-55 144-165 (353)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=4.2e-24 Score=142.83 Aligned_cols=82 Identities=23% Similarity=0.445 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||+|||.++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++.|||..++|++|+|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=8.8e-23 Score=138.93 Aligned_cols=83 Identities=12% Similarity=0.283 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||+++++++|+++|++||.|.+++|++|+.+++++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCC
Q psy2141 110 ITP 112 (173)
Q Consensus 110 ~~~ 112 (173)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=136.93 Aligned_cols=84 Identities=18% Similarity=0.353 Sum_probs=77.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcC-CceeCCeEEEEEEe
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN-LFDLGGQYLRVGRA 109 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G-~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~-g~~i~g~~l~v~~a 109 (173)
+++|||+|||.+++|++|+++|++|| .|.++++++++.+|+++|||||+|.+.++|++|++.++ +..++|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999999999999874 57899999999999
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
.+++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.89 E-value=1.6e-22 Score=151.47 Aligned_cols=118 Identities=61% Similarity=1.003 Sum_probs=104.1
Q ss_pred CCCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEE
Q psy2141 1 MQHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIE 80 (173)
Q Consensus 1 ~l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~ 80 (173)
.++|+.|+|.++.......+..+.......+.++|||+|||.++++++|+++|++||.|..+++.+++.+|+++|||||+
T Consensus 94 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 173 (216)
T 2qfj_A 94 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIE 173 (216)
T ss_dssp CCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred eeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEE
Confidence 47899999999886655555555666667789999999999999999999999999999999999998899999999999
Q ss_pred EcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCCCCC
Q psy2141 81 YETKQASNEAISSMNLFDLGGQYLRVGRAITPPNALHS 118 (173)
Q Consensus 81 f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~ 118 (173)
|.+.++|.+|++.|||..++|++|+|.++.+++.....
T Consensus 174 F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~~~ 211 (216)
T 2qfj_A 174 YEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLT 211 (216)
T ss_dssp ESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTTSC
T ss_pred ecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCCCC
Confidence 99999999999999999999999999999877555433
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=131.04 Aligned_cols=84 Identities=27% Similarity=0.497 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+.+++.+++++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCC
Q psy2141 110 ITPP 113 (173)
Q Consensus 110 ~~~~ 113 (173)
+++|
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8754
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=5e-23 Score=136.61 Aligned_cols=82 Identities=12% Similarity=0.364 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCc--eeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCc----eeCCeE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGP--IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLF----DLGGQY 103 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~--v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~----~i~g~~ 103 (173)
....+|||+|||+++++++|+++|++||. +..|++++|+.+|++||||||+|.+.++|++|++.|||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 46789999999999999999999999995 679999999999999999999999999999999999996 599999
Q ss_pred EEEEEeeC
Q psy2141 104 LRVGRAIT 111 (173)
Q Consensus 104 l~v~~a~~ 111 (173)
|.|+|++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=4e-22 Score=128.37 Aligned_cols=81 Identities=21% Similarity=0.437 Sum_probs=78.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
.+|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|||..++|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999876
Q ss_pred C
Q psy2141 113 P 113 (173)
Q Consensus 113 ~ 113 (173)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=5.4e-22 Score=131.01 Aligned_cols=89 Identities=31% Similarity=0.578 Sum_probs=83.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+.+++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred eCCCCCCCC
Q psy2141 110 ITPPNALHS 118 (173)
Q Consensus 110 ~~~~~~~~~ 118 (173)
+++......
T Consensus 83 ~~~~~~~~~ 91 (95)
T 2dnz_A 83 TERLDGGSG 91 (95)
T ss_dssp SCCCCCCCC
T ss_pred ccccCCCCC
Confidence 877655433
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=1.1e-21 Score=133.93 Aligned_cols=87 Identities=31% Similarity=0.525 Sum_probs=82.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 56889999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
++++...
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8765543
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=7.7e-22 Score=131.28 Aligned_cols=87 Identities=21% Similarity=0.350 Sum_probs=82.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
++++...
T Consensus 86 ~~~~~~~ 92 (99)
T 1whw_A 86 TIKKEAS 92 (99)
T ss_dssp CCCSTTC
T ss_pred CCCcccc
Confidence 8876543
No 11
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=6.9e-22 Score=135.60 Aligned_cols=89 Identities=24% Similarity=0.433 Sum_probs=82.6
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||.++++++|+++|++||.|..+.+..++ +|+++|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCC
Q psy2141 109 AITPPNALHS 118 (173)
Q Consensus 109 a~~~~~~~~~ 118 (173)
+++++.....
T Consensus 83 a~~~~~~~~~ 92 (116)
T 2fy1_A 83 AKKPSFQSGG 92 (116)
T ss_dssp CCCSSCSSSS
T ss_pred CCCCCCCCCC
Confidence 9876655444
No 12
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=6.1e-22 Score=131.18 Aligned_cols=84 Identities=30% Similarity=0.502 Sum_probs=79.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
+.++|||+|||.++++++|+++|++||.|..+++.+++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCCC
Q psy2141 111 TPPN 114 (173)
Q Consensus 111 ~~~~ 114 (173)
+++.
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7543
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=8.1e-22 Score=131.22 Aligned_cols=86 Identities=26% Similarity=0.503 Sum_probs=81.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++ |++..++|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 467999999999999999999999999999999999999899999999999999999999998 9999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
.++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 8765554
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.2e-22 Score=132.71 Aligned_cols=87 Identities=24% Similarity=0.395 Sum_probs=82.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 56899999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
++++...
T Consensus 93 ~~~~~~~ 99 (103)
T 2cq0_A 93 KPSTNSG 99 (103)
T ss_dssp SCCCCSC
T ss_pred CCCCCCC
Confidence 8765543
No 15
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=9.7e-22 Score=134.35 Aligned_cols=88 Identities=20% Similarity=0.389 Sum_probs=82.5
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||.++++++|+++|++||.|..+++++++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eeCCCCCC
Q psy2141 109 AITPPNAL 116 (173)
Q Consensus 109 a~~~~~~~ 116 (173)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 98765544
No 16
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=129.52 Aligned_cols=87 Identities=26% Similarity=0.398 Sum_probs=81.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEE-EEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYC-KLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~-~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
.+.++|||+|||.++++++|+++|++||.|..+ ++++++.++.++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred eeCCCCCC
Q psy2141 109 AITPPNAL 116 (173)
Q Consensus 109 a~~~~~~~ 116 (173)
+.+++...
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98765443
No 17
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.4e-22 Score=131.78 Aligned_cols=87 Identities=23% Similarity=0.405 Sum_probs=82.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 46899999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
++++...
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8765554
No 18
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9e-22 Score=131.62 Aligned_cols=88 Identities=22% Similarity=0.450 Sum_probs=82.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+++++++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46899999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q psy2141 110 ITPPNALH 117 (173)
Q Consensus 110 ~~~~~~~~ 117 (173)
++++....
T Consensus 90 ~~~~~~~~ 97 (102)
T 1x5s_A 90 GKSSDNRS 97 (102)
T ss_dssp ECCCCCCC
T ss_pred CCCCCCCC
Confidence 98765543
No 19
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=5.8e-22 Score=128.20 Aligned_cols=81 Identities=25% Similarity=0.472 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|||..++|++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46899999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred e
Q psy2141 110 I 110 (173)
Q Consensus 110 ~ 110 (173)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 20
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=8.9e-23 Score=133.83 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFG--PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G--~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
.+|||+|||+++++++|+++|++|| .|.++++++++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy2141 111 TPPNA 115 (173)
Q Consensus 111 ~~~~~ 115 (173)
+++..
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76443
No 21
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=130.27 Aligned_cols=84 Identities=18% Similarity=0.407 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+..++ +|+++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred eCCCC
Q psy2141 110 ITPPN 114 (173)
Q Consensus 110 ~~~~~ 114 (173)
++++.
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 22
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.87 E-value=2.9e-21 Score=133.74 Aligned_cols=86 Identities=15% Similarity=0.299 Sum_probs=80.4
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||..+++++|+++|++||.|..+++.+++ +|+++|||||+|.+.++|++|++.|||..++|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred eeCCCCC
Q psy2141 109 AITPPNA 115 (173)
Q Consensus 109 a~~~~~~ 115 (173)
+.+....
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9865444
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=131.76 Aligned_cols=87 Identities=24% Similarity=0.478 Sum_probs=82.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 56899999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
++++...
T Consensus 93 ~~~~~~~ 99 (105)
T 1x5u_A 93 SAHNKNL 99 (105)
T ss_dssp TTTSCCC
T ss_pred CCCCcCC
Confidence 8766554
No 24
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=3.2e-21 Score=135.90 Aligned_cols=91 Identities=23% Similarity=0.479 Sum_probs=84.0
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
+..+.++|||+|||.++++++|+++|+.||.|..+++++++.+++++|||||+|.+.++|++|++.|||..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44568999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCC
Q psy2141 108 RAITPPNALHS 118 (173)
Q Consensus 108 ~a~~~~~~~~~ 118 (173)
++++.......
T Consensus 118 ~a~~~~~~~~~ 128 (139)
T 1u6f_A 118 LAASGHQRPGI 128 (139)
T ss_dssp ESSCCCCCCCS
T ss_pred ECCCCCCCCCC
Confidence 99876655433
No 25
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=141.53 Aligned_cols=88 Identities=14% Similarity=0.317 Sum_probs=82.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeE--EEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCc----eeCCeE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKY--CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLF----DLGGQY 103 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~--~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~----~i~g~~ 103 (173)
.+.++|||+|||+++++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|++.|||. .++|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 56789999999999999999999999999976 99999999999999999999999 999999999999 999999
Q ss_pred EEEEEeeCCCCCCCC
Q psy2141 104 LRVGRAITPPNALHS 118 (173)
Q Consensus 104 l~v~~a~~~~~~~~~ 118 (173)
|+|+++++.......
T Consensus 100 l~V~~a~~~~~~~~~ 114 (131)
T 2m2b_A 100 INVEFAKGSKRDMAS 114 (131)
T ss_dssp CCCEECCCSCCCCCC
T ss_pred EEEEECCCCCCCCCC
Confidence 999999887665544
No 26
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=8.4e-22 Score=132.07 Aligned_cols=87 Identities=18% Similarity=0.349 Sum_probs=81.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+.+++.+++++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 56899999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
++.....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dnm_A 91 RYGRRDL 97 (103)
T ss_dssp SSCCSCC
T ss_pred CcCCCCC
Confidence 8765443
No 27
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-21 Score=131.61 Aligned_cols=85 Identities=21% Similarity=0.404 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+++++++.+++++|||||+|.+.++|++|++.|++ .+.|++|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 5689999999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
......
T Consensus 94 ~~~~~~ 99 (116)
T 2cqd_A 94 YLGAKP 99 (116)
T ss_dssp TTTCCC
T ss_pred ccCCCc
Confidence 765433
No 28
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=128.42 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+.+++.+++++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999997
Q ss_pred e
Q psy2141 110 I 110 (173)
Q Consensus 110 ~ 110 (173)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 29
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=130.52 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+++++++ +++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 568899999999999999999999999999999999997 6999999999999999999999999999999999999998
Q ss_pred eCCC
Q psy2141 110 ITPP 113 (173)
Q Consensus 110 ~~~~ 113 (173)
+...
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7543
No 30
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=132.00 Aligned_cols=85 Identities=31% Similarity=0.418 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..+.+.+++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC
Q psy2141 110 ITPPN 114 (173)
Q Consensus 110 ~~~~~ 114 (173)
.+++.
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 87643
No 31
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=131.85 Aligned_cols=87 Identities=23% Similarity=0.437 Sum_probs=82.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcC------CceeCCeE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN------LFDLGGQY 103 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~------g~~i~g~~ 103 (173)
.+.++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|++|++.|| +..++|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 568899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEeeCCCCCC
Q psy2141 104 LRVGRAITPPNAL 116 (173)
Q Consensus 104 l~v~~a~~~~~~~ 116 (173)
|+|.++.++....
T Consensus 93 l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 93 LKVDLAVTRDEAA 105 (111)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCccCC
Confidence 9999998765544
No 32
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=129.29 Aligned_cols=87 Identities=22% Similarity=0.429 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCC---CCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSS---PHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~---~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+.+++. +++++|||||+|.+.++|++|++.|||..+.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998875 5689999999999999999999999999999999999
Q ss_pred EEeeCCCCCC
Q psy2141 107 GRAITPPNAL 116 (173)
Q Consensus 107 ~~a~~~~~~~ 116 (173)
.+++++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998765443
No 33
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=128.87 Aligned_cols=82 Identities=24% Similarity=0.416 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|||..++|++|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.7e-21 Score=133.33 Aligned_cols=83 Identities=29% Similarity=0.508 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
...+|||+|||+++++++|+++|++||.|..|+|++++ +.++|||||+|.+.++|++|++.|+|..++|++|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999985 4589999999999999999999999999999999999988
Q ss_pred CCCCC
Q psy2141 111 TPPNA 115 (173)
Q Consensus 111 ~~~~~ 115 (173)
++...
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 76544
No 35
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=6.6e-22 Score=134.06 Aligned_cols=87 Identities=32% Similarity=0.614 Sum_probs=81.7
Q ss_pred hhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
....+.++|||+|||..+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++.|+|..++|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33457889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy2141 107 GRAITPP 113 (173)
Q Consensus 107 ~~a~~~~ 113 (173)
.++++++
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 36
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=2.1e-21 Score=131.60 Aligned_cols=85 Identities=27% Similarity=0.386 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..++|++|+|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred eCCCC
Q psy2141 110 ITPPN 114 (173)
Q Consensus 110 ~~~~~ 114 (173)
.+++.
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 87653
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=130.17 Aligned_cols=88 Identities=24% Similarity=0.445 Sum_probs=82.3
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccC-CCCCCcceEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQG-SSPHRHKGYGFIEYETKQASNEAISSM-NLFDLGGQYLRV 106 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~-~~~g~~~g~afv~f~~~~~a~~a~~~l-~g~~i~g~~l~v 106 (173)
..+.++|||+|||..+++++|+++|++||.|..|.++++ +.+++++|||||+|.+.++|++|++.| |+..+.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 356899999999999999999999999999999999999 789999999999999999999999999 999999999999
Q ss_pred EEeeCCCCCC
Q psy2141 107 GRAITPPNAL 116 (173)
Q Consensus 107 ~~a~~~~~~~ 116 (173)
.++++++...
T Consensus 92 ~~a~~~~~~~ 101 (107)
T 2cph_A 92 EWADSEVTVQ 101 (107)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998765544
No 38
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=1.6e-21 Score=131.23 Aligned_cols=87 Identities=22% Similarity=0.320 Sum_probs=81.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee---CCeEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL---GGQYLRV 106 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i---~g~~l~v 106 (173)
.+.++|||+|||.++++++|+++|++||.|..+++++++.+++++|||||+|.+.++|++|++.||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4678999999999999999999999999999999999998999999999999999999999999999988 8999999
Q ss_pred EEeeCCCCCC
Q psy2141 107 GRAITPPNAL 116 (173)
Q Consensus 107 ~~a~~~~~~~ 116 (173)
.++.++....
T Consensus 91 ~~a~~~~~~~ 100 (106)
T 2dgp_A 91 KPADSESRGG 100 (106)
T ss_dssp EECCCCSCCC
T ss_pred EECCcccccC
Confidence 9998766544
No 39
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=129.70 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCcee-EEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeE----E
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIK-YCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQY----L 104 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~-~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~----l 104 (173)
.+.++|||+|||.++++++|+++|++||.|. .+++++++.+++++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4689999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEEeeCCC
Q psy2141 105 RVGRAITPP 113 (173)
Q Consensus 105 ~v~~a~~~~ 113 (173)
+|.|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999987653
No 40
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=3.5e-21 Score=130.64 Aligned_cols=92 Identities=14% Similarity=0.355 Sum_probs=76.9
Q ss_pred hhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2141 22 IDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG 101 (173)
Q Consensus 22 ~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 101 (173)
.+...++..+.++|||+|||.++++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|++|++.+ +..++|
T Consensus 15 ~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g 93 (109)
T 2rs2_A 15 VPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS 93 (109)
T ss_dssp -----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT
T ss_pred CccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC
Confidence 3444555677899999999999999999999999999999999999989999999999999999999999986 499999
Q ss_pred eEEEEEEeeCCCC
Q psy2141 102 QYLRVGRAITPPN 114 (173)
Q Consensus 102 ~~l~v~~a~~~~~ 114 (173)
+.|+|.++.+++.
T Consensus 94 ~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 94 KTIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEEECCCCCC
T ss_pred EEEEEEEccCCCC
Confidence 9999999987654
No 41
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=131.78 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=82.3
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCcee--------EEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIK--------YCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG 100 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~--------~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~ 100 (173)
..+.++|||+|||.++++++|+++|++||.|. .+++.+++.+++++|||||+|.+.++|++|++.|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35789999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEEeeCCCCCC
Q psy2141 101 GQYLRVGRAITPPNAL 116 (173)
Q Consensus 101 g~~l~v~~a~~~~~~~ 116 (173)
|++|+|.+++++....
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999998765543
No 42
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=1.3e-21 Score=134.24 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=78.3
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
+..+.++|||+|||.++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++.|||..++|++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred Eee
Q psy2141 108 RAI 110 (173)
Q Consensus 108 ~a~ 110 (173)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 43
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=129.98 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeE--------EEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKY--------CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG 101 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~--------~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 101 (173)
.+.++|||+|||.++++++|+++|++||.|.. +++.+++.+|+++|||||+|.+.++|++|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46899999999999999999999999999999 9999999899999999999999999999999999999999
Q ss_pred eEEEEEEee
Q psy2141 102 QYLRVGRAI 110 (173)
Q Consensus 102 ~~l~v~~a~ 110 (173)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 44
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=130.48 Aligned_cols=86 Identities=19% Similarity=0.339 Sum_probs=80.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-cCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCce-eCCeEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEA-FGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFD-LGGQYLRVG 107 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~-~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~-i~g~~l~v~ 107 (173)
.+.++|||+|||.++++++|+++|++ ||.|..+++++++ +|+++|||||+|.+.++|++|++.|++.. ++|++|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 56899999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred EeeCCCCCC
Q psy2141 108 RAITPPNAL 116 (173)
Q Consensus 108 ~a~~~~~~~ 116 (173)
++.++....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998765543
No 45
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.86 E-value=3.2e-21 Score=129.57 Aligned_cols=86 Identities=22% Similarity=0.358 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC---eEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG---QYLRV 106 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g---~~l~v 106 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+.+++ +++++|||||+|.+.++|++|++.|||..+.| ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 468999999999999999999999999999999999997 89999999999999999999999999999998 99999
Q ss_pred EEeeCCCCCC
Q psy2141 107 GRAITPPNAL 116 (173)
Q Consensus 107 ~~a~~~~~~~ 116 (173)
.++++++...
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9998766543
No 46
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=6.2e-21 Score=127.86 Aligned_cols=85 Identities=21% Similarity=0.367 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++|| |..+++++++.+++++|||||+|.+.++|++|+ .||+..+.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4678999999999999999999999997 999999999989999999999999999999999 89999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
.+++...
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8765544
No 47
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.86 E-value=3.3e-21 Score=133.30 Aligned_cols=86 Identities=20% Similarity=0.322 Sum_probs=80.1
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||.++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|+ .|||..++|+.|+|.+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 345799999999999999999999999999999999999889999999999999999999999 8999999999999999
Q ss_pred eeCCCCC
Q psy2141 109 AITPPNA 115 (173)
Q Consensus 109 a~~~~~~ 115 (173)
+++....
T Consensus 112 a~~~~~~ 118 (124)
T 2jwn_A 112 KRTNMPG 118 (124)
T ss_dssp SSCCCSS
T ss_pred CCCCCCC
Confidence 9865444
No 48
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=4.4e-21 Score=125.04 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
..++|||+|||.++++++|+++|++||.|..+++.+++.+++++|||||+|.+.++|++|+ .|||..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4589999999999999999999999999999999999889999999999999999999999 999999999999999987
Q ss_pred CC
Q psy2141 111 TP 112 (173)
Q Consensus 111 ~~ 112 (173)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=3e-21 Score=125.50 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCC-cceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHR-HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~-~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
..++|||+|||.++++++|+++|++||.|..+.+..++.++. ++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999877666 8999999999999999999999999999999999999
Q ss_pred eCCC
Q psy2141 110 ITPP 113 (173)
Q Consensus 110 ~~~~ 113 (173)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 50
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.8e-21 Score=126.58 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIK----SVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~----~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
.+.++|||+|||+++++++|+ ++|++||.|..+++++++.+ +|||||+|.+.++|++|++.|||..++|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356799999999999999999 99999999999999998754 88999999999999999999999999999999
Q ss_pred EEEeeCCCCC
Q psy2141 106 VGRAITPPNA 115 (173)
Q Consensus 106 v~~a~~~~~~ 115 (173)
|+++++.+..
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 51
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=128.08 Aligned_cols=86 Identities=22% Similarity=0.377 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q psy2141 110 ITPPNALH 117 (173)
Q Consensus 110 ~~~~~~~~ 117 (173)
+++.....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2d9p_A 91 QRKEERQS 98 (103)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 88765543
No 52
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=3.3e-22 Score=133.67 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC-eE
Q psy2141 31 LYNRIYVASIHP------DLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG-QY 103 (173)
Q Consensus 31 ~~~~l~V~nLp~------~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g-~~ 103 (173)
..++|||+|||. ++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++.|||..+.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEEeeC
Q psy2141 104 LRVGRAIT 111 (173)
Q Consensus 104 l~v~~a~~ 111 (173)
|+|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999865
No 53
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=7.1e-21 Score=123.67 Aligned_cols=80 Identities=20% Similarity=0.488 Sum_probs=75.3
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||.++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++. ++..++|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 45789999999999999999999999999999999999998999999999999999999999965 88899999999987
Q ss_pred e
Q psy2141 109 A 109 (173)
Q Consensus 109 a 109 (173)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 54
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.6e-21 Score=127.94 Aligned_cols=85 Identities=28% Similarity=0.412 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCC-CCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSP-HRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~-g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
.+.++|||+|||.++++++|+++|+.|| |..+.+++++.+ ++++|||||+|.+.++|++|+ .||+..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 999999999887 999999999999999999999 9999999999999999
Q ss_pred eeCCCCCC
Q psy2141 109 AITPPNAL 116 (173)
Q Consensus 109 a~~~~~~~ 116 (173)
+.+++...
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 98776554
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=126.10 Aligned_cols=86 Identities=27% Similarity=0.444 Sum_probs=78.7
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||.++++++|+++|++||.|..|++++++. .++|||||+|.+.++|++|++.||+..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35689999999999999999999999999999999999853 3689999999999999999999999999999999999
Q ss_pred eeCCCCCC
Q psy2141 109 AITPPNAL 116 (173)
Q Consensus 109 a~~~~~~~ 116 (173)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 98765543
No 56
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=138.16 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFG--PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G--~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..++|||+|||+++++++|+++|+.|| .|..+++++|+.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q psy2141 109 AIT 111 (173)
Q Consensus 109 a~~ 111 (173)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 57
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-21 Score=133.04 Aligned_cols=85 Identities=18% Similarity=0.300 Sum_probs=79.7
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
+....++|||+|||.++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|++|+ .||+..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3445789999999999999999999999999999999999989999999999999999999999 999999999999999
Q ss_pred EeeCCC
Q psy2141 108 RAITPP 113 (173)
Q Consensus 108 ~a~~~~ 113 (173)
++++++
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 987643
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=125.31 Aligned_cols=86 Identities=20% Similarity=0.338 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+++++++. .++|||||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5689999999999999999999999999999999999853 38999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q psy2141 110 ITPPNALH 117 (173)
Q Consensus 110 ~~~~~~~~ 117 (173)
.+++....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cq3_A 91 TARVMTNS 98 (103)
T ss_dssp CSSCCCCC
T ss_pred ccCCCCCC
Confidence 87765543
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=126.24 Aligned_cols=81 Identities=19% Similarity=0.360 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..+++.+++. ++++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4578999999999999999999999999999999999974 999999999999999999999999999999999999998
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 60
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=1.6e-20 Score=134.90 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=82.4
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCC
Q psy2141 109 AITPPNAL 116 (173)
Q Consensus 109 a~~~~~~~ 116 (173)
+++.....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 98765443
No 61
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.9e-21 Score=129.98 Aligned_cols=86 Identities=16% Similarity=0.512 Sum_probs=80.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|++|++. ++..++|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4568999999999999999999999999999999999998999999999999999999999988 999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
.++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8776554
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=2.3e-21 Score=135.43 Aligned_cols=85 Identities=26% Similarity=0.417 Sum_probs=80.7
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||.++++++|+++|++||.|..+++++++.+++++|||||+|.+.++|++|++.|||..|+|++|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCC
Q psy2141 109 AITPP 113 (173)
Q Consensus 109 a~~~~ 113 (173)
+++++
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98654
No 63
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=9.9e-21 Score=127.58 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=77.5
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||..+++++|+++|++||.|..+++++++ +|+++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3568899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ee
Q psy2141 109 AI 110 (173)
Q Consensus 109 a~ 110 (173)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5.4e-21 Score=128.54 Aligned_cols=86 Identities=15% Similarity=0.401 Sum_probs=80.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|++|++. ++..+.|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 5689999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
.++....
T Consensus 93 ~~~~~~~ 99 (105)
T 2dh8_A 93 TPRGMQP 99 (105)
T ss_dssp CCSSCCT
T ss_pred cCCCCCC
Confidence 8765443
No 65
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=9.9e-21 Score=124.16 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+++.++ +++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999999885 7899999999999999999999999999999999999999
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
++....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 876443
No 66
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-21 Score=127.75 Aligned_cols=84 Identities=13% Similarity=0.164 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||+|||.++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999998888888889999999999999999999999999999999999999998
Q ss_pred eCCC
Q psy2141 110 ITPP 113 (173)
Q Consensus 110 ~~~~ 113 (173)
..++
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7543
No 67
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=129.11 Aligned_cols=83 Identities=29% Similarity=0.458 Sum_probs=75.7
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCC-CCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS-SPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~-~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
....++|||+|||.++++++|+++|++|| |..+++++++ .+|+++|||||+|.+.++|++|+ .|||..++|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35689999999999999999999999999 9999999998 68999999999999999999999 899999999999999
Q ss_pred EeeCCC
Q psy2141 108 RAITPP 113 (173)
Q Consensus 108 ~a~~~~ 113 (173)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998654
No 68
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=7.2e-21 Score=131.92 Aligned_cols=87 Identities=30% Similarity=0.402 Sum_probs=81.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.|||..|.|+.|+|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
.+++...
T Consensus 100 ~~~~~~~ 106 (126)
T 3ex7_B 100 FVRGPPK 106 (126)
T ss_dssp EESSSCC
T ss_pred cCCCCCC
Confidence 8765543
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=121.95 Aligned_cols=82 Identities=16% Similarity=0.340 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||+|||+++++++|+++|+.| .|..++++++ .+|+++|||||+|.+.++|++|++ ||+..++|+.|+|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 467899999999999999999999999 9999999999 799999999999999999999999 9999999999999999
Q ss_pred eCCCC
Q psy2141 110 ITPPN 114 (173)
Q Consensus 110 ~~~~~ 114 (173)
.+++.
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 87654
No 70
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=1.9e-20 Score=134.49 Aligned_cols=86 Identities=19% Similarity=0.351 Sum_probs=81.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++.|||..++|++|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
++....
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 875433
No 71
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=126.47 Aligned_cols=86 Identities=17% Similarity=0.262 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCc-eeEEEEc-cCCCCCCcceEEEEEEcCHHHHHHHHHhcC--CceeCCeEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGP-IKYCKLQ-QGSSPHRHKGYGFIEYETKQASNEAISSMN--LFDLGGQYLR 105 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~-v~~~~i~-~~~~~g~~~g~afv~f~~~~~a~~a~~~l~--g~~i~g~~l~ 105 (173)
.+.++|||+|||.++++++|+++|++||. |..+.++ .++.+|+++|||||+|.+.++|++|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 888889999999999999999999999996 5899999999
Q ss_pred EEEeeCCCCC
Q psy2141 106 VGRAITPPNA 115 (173)
Q Consensus 106 v~~a~~~~~~ 115 (173)
|.++++++..
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876553
No 72
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=128.28 Aligned_cols=87 Identities=17% Similarity=0.276 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhccCceeEEEEccCCCCC---CcceEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIK---SVFEAFGPIKYCKLQQGSSPH---RHKGYGFIEYETKQASNEAISSMNLFDLGGQY 103 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~---~~F~~~G~v~~~~i~~~~~~g---~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~ 103 (173)
...++|||+|||+++++++|+ ++|++||.|..+.+.+++.++ +++|||||+|.+.++|++|++.|||..++|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 357899999999999999999 999999999999999987644 55699999999999999999999999999999
Q ss_pred EEEEEeeCCCCCC
Q psy2141 104 LRVGRAITPPNAL 116 (173)
Q Consensus 104 l~v~~a~~~~~~~ 116 (173)
|+|.++.+++...
T Consensus 93 l~V~~a~~k~~~~ 105 (111)
T 2cpi_A 93 LKASLGTTKYCSY 105 (111)
T ss_dssp EEEESCCCCSCSS
T ss_pred EEEEecccccccc
Confidence 9999998876443
No 73
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.7e-21 Score=128.85 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||+++++++|+++|++||.|..|.+++++. |+++|||||+|.+.++|++|+. +++..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999976 9999999999999999999998 8999999999999987
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 74
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2e-20 Score=134.14 Aligned_cols=100 Identities=19% Similarity=0.345 Sum_probs=89.7
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
++|+.|+|.++..... ....+.++|||+|||..+++++|+++|++||.|..+.+.+++.+|.++|+|||+|
T Consensus 66 ~~g~~i~v~~~~~~~~---------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f 136 (166)
T 3md3_A 66 IENNIVKINWAFQSQQ---------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 136 (166)
T ss_dssp ETTEECEEEECCCCCC---------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEE
T ss_pred cCCCeeEEEEcCCCCC---------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEe
Confidence 5788999987754322 1224678999999999999999999999999999999999988999999999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
.+.++|.+|++.|||..++|++|+|.|++
T Consensus 137 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 137 TSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99999999999999999999999999985
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-21 Score=128.12 Aligned_cols=83 Identities=29% Similarity=0.531 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
+.++|||+|||..+++++|+++|++||.|..+.+.+++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCC
Q psy2141 111 TPP 113 (173)
Q Consensus 111 ~~~ 113 (173)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
No 76
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-21 Score=126.72 Aligned_cols=81 Identities=19% Similarity=0.446 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999999999989999999999999999999999999999999999988765
Q ss_pred e
Q psy2141 110 I 110 (173)
Q Consensus 110 ~ 110 (173)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 77
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.9e-20 Score=123.85 Aligned_cols=85 Identities=16% Similarity=0.326 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++ ++..++|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 568899999999999999999999999999999999999899999999999999999999998 478999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqg_A 91 NSKQSQD 97 (103)
T ss_dssp CTTCCCC
T ss_pred CCCCcCC
Confidence 8765543
No 78
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=4.6e-21 Score=121.21 Aligned_cols=75 Identities=24% Similarity=0.584 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 34 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
+|||+|||.++++++|+++|++||.|..+.+.+++.+|+++|||||+|.+.++|++|++ |++..++|++|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999997 9999999999999875
No 79
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=125.43 Aligned_cols=84 Identities=26% Similarity=0.455 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 46789999999999999999999999999999999654 557999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
++.....
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4a_A 97 RSGRGTG 103 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 8765543
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=128.30 Aligned_cols=84 Identities=21% Similarity=0.390 Sum_probs=77.6
Q ss_pred hhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
....+.++|||+|||.++++++|+++|++||.|..+++.+++ +.++|||||+|.+.++|++|++.|||..++|++|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344578999999999999999999999999999999999985 458999999999999999999999999999999999
Q ss_pred EEeeCC
Q psy2141 107 GRAITP 112 (173)
Q Consensus 107 ~~a~~~ 112 (173)
.+++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998765
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=126.87 Aligned_cols=80 Identities=23% Similarity=0.227 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC--ceeCCeEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL--FDLGGQYLRVG 107 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g--~~i~g~~l~v~ 107 (173)
.+.++|||+|||++++|++|+++|++||.|..++++++ ||||||+|.+.++|++|++.|++ ..+.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46899999999999999999999999999999999876 79999999999999999998864 78999999999
Q ss_pred EeeCCCCC
Q psy2141 108 RAITPPNA 115 (173)
Q Consensus 108 ~a~~~~~~ 115 (173)
++++++..
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99865443
No 82
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=6e-21 Score=125.94 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 35689999999999999999999999999999988888889999999999999999999999999999999999999987
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 83
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=2.2e-21 Score=126.85 Aligned_cols=82 Identities=29% Similarity=0.492 Sum_probs=74.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
++|||+|||.++++++|+++|++||.|..+.+.+++.+|+++|||||+|.+.+ |.+|++.|||..++|++|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 99999999999999999999999875
Q ss_pred CCC
Q psy2141 113 PNA 115 (173)
Q Consensus 113 ~~~ 115 (173)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 444
No 84
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=124.43 Aligned_cols=78 Identities=17% Similarity=0.277 Sum_probs=71.8
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCce--eCCeEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFD--LGGQYLRV 106 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~--i~g~~l~v 106 (173)
..+.++|||+|||+++++++|+++|++||.|..++++++ ||+|||+|.+.++|.+|++.|++.. +.|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 357899999999999999999999999999999999864 7899999999999999999999875 78999999
Q ss_pred EEeeCC
Q psy2141 107 GRAITP 112 (173)
Q Consensus 107 ~~a~~~ 112 (173)
++++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998764
No 85
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.83 E-value=2.4e-20 Score=134.84 Aligned_cols=97 Identities=26% Similarity=0.482 Sum_probs=88.5
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
++|++|+|.++..... ....++|||+|||..+++++|+++|++||.|..+.+.+++.+|.++|||||+|
T Consensus 75 ~~g~~i~v~~~~~~~~-----------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP-----------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp ETTEECEEECCSSCCC-----------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred ecCceeeecCCcccCC-----------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEe
Confidence 6799999998764321 13478999999999999999999999999999999999988999999999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|.+|++.|||..++|++|+|+++
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999999999999987
No 86
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.83 E-value=2.6e-20 Score=137.55 Aligned_cols=113 Identities=23% Similarity=0.411 Sum_probs=93.9
Q ss_pred CCCcccccCCCCCCCCCcchhh---------hhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCC
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVID---------EITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHR 72 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~---------~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~ 72 (173)
|+|+.|+|.++........... .......+.++|||+|||..+++++|+++|++||.|..+.+.+++.+|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 6899999998765421111000 0011124679999999999999999999999999999999999988999
Q ss_pred cceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCC
Q psy2141 73 HKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPN 114 (173)
Q Consensus 73 ~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~ 114 (173)
++|||||+|.+.++|++|++.|||..++|+.|+|.+++++..
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999999999987643
No 87
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.1e-20 Score=122.89 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 568999999999999999999999999987 56666 68999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
++++...
T Consensus 89 ~~~~~~~ 95 (101)
T 2fc9_A 89 GPRGSPN 95 (101)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 8765543
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=130.14 Aligned_cols=82 Identities=26% Similarity=0.485 Sum_probs=77.5
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
...+.++|||+|||..+++++|+++|++||.|..+++++++.+++++|||||+|.+.++|++|++.|||..++|++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ee
Q psy2141 108 RA 109 (173)
Q Consensus 108 ~a 109 (173)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 89
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=125.86 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC--ceeCCeEEEE
Q psy2141 30 KLYNRIYVASIHP-DLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL--FDLGGQYLRV 106 (173)
Q Consensus 30 ~~~~~l~V~nLp~-~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g--~~i~g~~l~v 106 (173)
.+.++|||+|||+ ++++++|+++|++||.|..+.++++ +|||||+|.+.++|++|++.|++ ..+.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4689999999999 9999999999999999999999876 58999999999999999999986 4599999999
Q ss_pred EEeeCCCCC
Q psy2141 107 GRAITPPNA 115 (173)
Q Consensus 107 ~~a~~~~~~ 115 (173)
.+++..+..
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999865443
No 90
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=9.7e-21 Score=133.20 Aligned_cols=86 Identities=19% Similarity=0.351 Sum_probs=80.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
++....
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 865443
No 91
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.1e-20 Score=121.38 Aligned_cols=79 Identities=28% Similarity=0.524 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC--CeEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG--GQYLRVG 107 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~--g~~l~v~ 107 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.||+..+. |++|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45789999999999999999999999999999999764 789999999999999999999999999 9999999
Q ss_pred EeeCCCC
Q psy2141 108 RAITPPN 114 (173)
Q Consensus 108 ~a~~~~~ 114 (173)
++++++.
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 92
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.9e-21 Score=120.57 Aligned_cols=76 Identities=17% Similarity=0.476 Sum_probs=73.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
++|||+|||.++++++|+++|++||.|..+.+.+++.+|+++|||||+|.+.++|++|++.++ ..++|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998899999999999999999999999999 9999999999986
No 93
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.7e-20 Score=119.93 Aligned_cols=74 Identities=12% Similarity=0.222 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
....|||+||++.++|++|+++|.+||+|..+++.. +||||||+|.+.++|++|++.||+..++|++|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999966 48999999999999999999999999999999999983
No 94
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-20 Score=125.91 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee--------CC
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL--------GG 101 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i--------~g 101 (173)
.+.++|||+|||.++++++|+++|++||.|..+++++++ ++.++|||||+|.+.++|++|++.|||..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 467899999999999999999999999999999999997 999999999999999999999999999999 57
Q ss_pred eEEEEEEeeCC
Q psy2141 102 QYLRVGRAITP 112 (173)
Q Consensus 102 ~~l~v~~a~~~ 112 (173)
++|.|.|+.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998854
No 95
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=6e-20 Score=133.14 Aligned_cols=86 Identities=27% Similarity=0.380 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|++|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
.+++..
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876544
No 96
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=6.4e-22 Score=135.50 Aligned_cols=91 Identities=19% Similarity=0.283 Sum_probs=83.7
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeE--------EEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKY--------CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL 99 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~--------~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i 99 (173)
+..+.++|||+|||.++++++|+++|++||.|.. +++++++.+++++|||||+|.+.++|++|++.|||..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3457899999999999999999999999999998 99999988999999999999999999999999999999
Q ss_pred CCeEEEEEEeeCCCCCCCC
Q psy2141 100 GGQYLRVGRAITPPNALHS 118 (173)
Q Consensus 100 ~g~~l~v~~a~~~~~~~~~ 118 (173)
.|++|+|.++++++.....
T Consensus 83 ~g~~l~V~~a~~~~~~~~g 101 (116)
T 2lcw_A 83 SGNPIKVSFATRRADFNRG 101 (116)
Confidence 9999999999887665433
No 97
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=126.34 Aligned_cols=81 Identities=10% Similarity=0.074 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCce-eEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPI-KYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v-~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
.+.++|||+|||+++++++|+++|+.||.| ..++|++++ +|+++|||||+|.+.++|++|++. |+..++|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 467899999999999999999999999999 899999998 999999999999999999999987 99999999999999
Q ss_pred eeCC
Q psy2141 109 AITP 112 (173)
Q Consensus 109 a~~~ 112 (173)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 98
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=125.33 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCe-
Q psy2141 30 KLYNRIYVASIHPDL------TEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQ- 102 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~------~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~- 102 (173)
...++|||+|||..+ ++++|+++|++||.|..+.+. +.+|+++|||||+|.+.++|++|++.|||..+.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 457899999999999 789999999999999999988 36899999999999999999999999999999998
Q ss_pred EEEEEEeeCC
Q psy2141 103 YLRVGRAITP 112 (173)
Q Consensus 103 ~l~v~~a~~~ 112 (173)
+|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 99
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-19 Score=120.80 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=77.5
Q ss_pred hhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
.......++|||+|||..+++++|+++|++||.|..+++.++ +|||||+|.+.++|++|++.|+|..+.|++|+
T Consensus 19 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 19 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp HHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 334556889999999999999999999999999999999876 78999999999999999999999999999999
Q ss_pred EEEeeCCCCCC
Q psy2141 106 VGRAITPPNAL 116 (173)
Q Consensus 106 v~~a~~~~~~~ 116 (173)
|.++++.+...
T Consensus 93 v~~a~~~~~~~ 103 (109)
T 1x4g_A 93 CYWGKESPDMT 103 (109)
T ss_dssp EECCCCCCSSC
T ss_pred EEecCCCCCCC
Confidence 99998766543
No 100
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=121.37 Aligned_cols=84 Identities=18% Similarity=0.345 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|+.|+ .+.+++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 5689999999999999999999999873 6778888889999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
+++....
T Consensus 90 ~~~~~~~ 96 (102)
T 2fc8_A 90 KPKGEGG 96 (102)
T ss_dssp CCCCSSS
T ss_pred cCCCCCC
Confidence 8876553
No 101
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=128.26 Aligned_cols=83 Identities=14% Similarity=0.326 Sum_probs=74.8
Q ss_pred hCCCCeEEEcCCCCCCCHHHHH----HHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIK----SVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~----~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l 104 (173)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|.+|++.|||..+.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3568899999999999999876 6999999999988753 57889999999999999999999999999999999
Q ss_pred EEEEeeCCCC
Q psy2141 105 RVGRAITPPN 114 (173)
Q Consensus 105 ~v~~a~~~~~ 114 (173)
+|+|++.+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987643
No 102
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=121.17 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhc--CCceeCCeEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM--NLFDLGGQYLRVG 107 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l--~g~~i~g~~l~v~ 107 (173)
.+.++|||+|||+++++++|+++|++||.|..+.++++ ||||||+|.+.++|++|++.| ++..+.|++|+|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 57899999999999999999999999999999998875 799999999999999999987 4678999999999
Q ss_pred EeeCCCCC
Q psy2141 108 RAITPPNA 115 (173)
Q Consensus 108 ~a~~~~~~ 115 (173)
+++.+...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99865444
No 103
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=7e-20 Score=125.91 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=76.3
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCc---eeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGP---IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~---v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
....++|||+|||+++++++|+++|+.||. |..++|++++. |+++|||||+|.+.++|++|++ ||+..++|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 356789999999999999999999999999 89999999975 9999999999999999999998 999999999999
Q ss_pred EEEeeCC
Q psy2141 106 VGRAITP 112 (173)
Q Consensus 106 v~~a~~~ 112 (173)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998643
No 104
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=2.3e-20 Score=133.24 Aligned_cols=80 Identities=19% Similarity=0.411 Sum_probs=74.9
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||+++++++|+++|++||.|..++++++ ++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356899999999999999999999999999999999887 589999999999999999999999999999999999
Q ss_pred eeCCC
Q psy2141 109 AITPP 113 (173)
Q Consensus 109 a~~~~ 113 (173)
+++++
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98754
No 105
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.82 E-value=2.1e-20 Score=134.59 Aligned_cols=99 Identities=19% Similarity=0.400 Sum_probs=88.3
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
++|+.|++.++.. ..+..+.++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|
T Consensus 68 ~~g~~i~v~~~~~-----------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f 136 (167)
T 2cjk_A 68 LDGKVIDPKRAIP-----------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 136 (167)
T ss_dssp ETTEECCCEECCC-----------HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEE
T ss_pred cCCeEcccccccc-----------hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEE
Confidence 6788888887642 11223577999999999999999999999999999999999988999999999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
.+.++|.+|++ +++..++|++|+|.++.++
T Consensus 137 ~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 137 DSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999999997 8999999999999999865
No 106
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=118.86 Aligned_cols=79 Identities=27% Similarity=0.561 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 468899999999999999999999999999999986 579999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
++++...
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 8766554
No 107
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9.9e-20 Score=122.58 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCc--eeCCeEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLF--DLGGQYLRVG 107 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~--~i~g~~l~v~ 107 (173)
.+.++|||+|||+++++++|+++|++||.|..+.++++ ||||||+|.+.++|++|++.|++. .+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999998765 799999999999999999988764 5999999999
Q ss_pred EeeCCCCC
Q psy2141 108 RAITPPNA 115 (173)
Q Consensus 108 ~a~~~~~~ 115 (173)
+++.+...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99875544
No 108
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=2.1e-19 Score=121.77 Aligned_cols=97 Identities=20% Similarity=0.442 Sum_probs=80.6
Q ss_pred CCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCC-CCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 3 HFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD-LTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 3 ~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
.|+.|++.......... .....++|||+|||.+ +++++|+++|++||.|..+.+ ++|||||+|
T Consensus 6 ~g~~~~~~~s~~~~~~~--------~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f 69 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKND--------PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQY 69 (110)
T ss_dssp CSCCCCCCCCCSCCSCC--------CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEEC
T ss_pred CCcccccccCCCCCCCC--------CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEE
Confidence 46777776554222111 1235689999999999 999999999999999999998 478999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCC
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNA 115 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~ 115 (173)
.+.++|++|++.||+..++|+.|+|.+++.++..
T Consensus 70 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 70 SNERHARAAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp SSSHHHHHHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999999999999999865443
No 109
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.2e-20 Score=122.52 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||+|||+++++++|+++|++|| +..++|++++ +++++|||||+|.+.++|++|+ .+|+..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 4578999999999999999999999999 4599999997 8999999999999999999999 57999999999999998
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 1wez_A 90 STAGTS 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765443
No 110
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=8.5e-20 Score=124.24 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=72.7
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G-~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
.....++|||+|||+++++++|+++|++|| .|..+.+..+ +++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345578999999999999999999999999 8999998643 47899999999999999999999999999999999
Q ss_pred EEeeCCC
Q psy2141 107 GRAITPP 113 (173)
Q Consensus 107 ~~a~~~~ 113 (173)
.++..++
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9987543
No 111
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5e-19 Score=119.65 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC-----eEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG-----QYL 104 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g-----~~l 104 (173)
...++|||+|||+++++++|+++|++||.|..+.++.+ |||||+|.+.++|++|++.||+..+.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred EEEEeeCCCCCC
Q psy2141 105 RVGRAITPPNAL 116 (173)
Q Consensus 105 ~v~~a~~~~~~~ 116 (173)
+|+++.+++...
T Consensus 86 ~V~~a~~~~~~~ 97 (108)
T 1x4c_A 86 RVKVDGPRSPSY 97 (108)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998765543
No 112
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=4.7e-20 Score=140.52 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFG--PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G--~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..++|||+|||+++++++|+++|++|| .|..|+|++++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q psy2141 109 AIT 111 (173)
Q Consensus 109 a~~ 111 (173)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 113
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=121.41 Aligned_cols=82 Identities=12% Similarity=0.245 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeE-EEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKY-CKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~-~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
.+.++|||+|||+++++++|+++|++||.|.. +.|+++ .+|+++|||||+|.+.++|++|++. ++..++|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 46789999999999999999999999999987 889998 7999999999999999999999988 99999999999999
Q ss_pred eeCCC
Q psy2141 109 AITPP 113 (173)
Q Consensus 109 a~~~~ 113 (173)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86543
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.7e-20 Score=125.48 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=73.6
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC--ceeCCeEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL--FDLGGQYLRV 106 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g--~~i~g~~l~v 106 (173)
..+.++|||+|||++++|++|+++|++||.|..++++++ ||||||+|.+.++|++|++.|++ ..+.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 356889999999999999999999999999999999876 79999999999999999999874 6899999999
Q ss_pred EEeeCCCCC
Q psy2141 107 GRAITPPNA 115 (173)
Q Consensus 107 ~~a~~~~~~ 115 (173)
.+++.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999865444
No 115
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=6e-20 Score=121.54 Aligned_cols=83 Identities=19% Similarity=0.427 Sum_probs=76.0
Q ss_pred hCCCCeEEEcCCCCCCCHHHHH----HHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIK----SVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~----~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l 104 (173)
..+.++|||+|||.++++++|+ ++|++||.|..+.+.+ +|.++|||||+|.+.++|++|++.|||..+.|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4578999999999999999999 9999999999999874 57789999999999999999999999999999999
Q ss_pred EEEEeeCCCC
Q psy2141 105 RVGRAITPPN 114 (173)
Q Consensus 105 ~v~~a~~~~~ 114 (173)
+|.++++++.
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987643
No 116
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.81 E-value=1.6e-19 Score=133.17 Aligned_cols=109 Identities=16% Similarity=0.352 Sum_probs=86.6
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
++|+.|+|.++........ .....+.++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|||||+|
T Consensus 79 ~~g~~l~v~~~~~~~~~~~-----~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F 153 (196)
T 1l3k_A 79 VDGRVVEPKRAVSREDSQR-----PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153 (196)
T ss_dssp ETTEECEEEECCC----------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred ECCEEeeeecccCcccccc-----cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEE
Confidence 6799999988764322111 12234578999999999999999999999999999999999988999999999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCCC
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 116 (173)
.+.++|.+|++. ++..++|+.|.|.++.++....
T Consensus 154 ~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 154 DDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred CCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 999999999977 7999999999999998765554
No 117
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=5.7e-20 Score=129.39 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=75.9
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCc---eeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGP---IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~---v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
....++|||+|||+++++++|+++|++||. |..++|++++. |+++|||||+|.+.++|++|++ ||+..++|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 356789999999999999999999999999 89999999976 9999999999999999999998 999999999999
Q ss_pred EEEeeC
Q psy2141 106 VGRAIT 111 (173)
Q Consensus 106 v~~a~~ 111 (173)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999753
No 118
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-21 Score=127.64 Aligned_cols=84 Identities=7% Similarity=0.240 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|.. .++.++.+|+++|||||+|.+.++|++|++ |||..+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 46789999999999999999999999999988 677777789999999999999999999998 9999999999999999
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
++++..
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 875443
No 119
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=119.16 Aligned_cols=73 Identities=25% Similarity=0.360 Sum_probs=67.9
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCe-EE
Q psy2141 32 YNRIYVASIHPDL------TEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQ-YL 104 (173)
Q Consensus 32 ~~~l~V~nLp~~~------~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~-~l 104 (173)
.++|||+|||..+ ++++|+++|++||.|..+.+. +.+|+++|||||+|.+.++|++|++.|||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 779999999999999999987 35899999999999999999999999999999999 88
Q ss_pred EE
Q psy2141 105 RV 106 (173)
Q Consensus 105 ~v 106 (173)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-20 Score=126.59 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 46799999999999999999999999999843322222237889999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
+++....
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 8766554
No 121
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=6.3e-19 Score=118.06 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.++ ++||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 467899999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred eCCCCCCCC
Q psy2141 110 ITPPNALHS 118 (173)
Q Consensus 110 ~~~~~~~~~ 118 (173)
+++......
T Consensus 81 ~~~~~~~~~ 89 (103)
T 2dgu_A 81 KPPDQKRKE 89 (103)
T ss_dssp CCCCCCCCC
T ss_pred CCCcccchh
Confidence 876655443
No 122
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=3.6e-19 Score=118.23 Aligned_cols=79 Identities=18% Similarity=0.403 Sum_probs=71.9
Q ss_pred hhhCCCCeEEEcCCCC-CCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 27 EEAKLYNRIYVASIHP-DLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 27 ~~~~~~~~l~V~nLp~-~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
....+.++|||+|||. ++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..++|++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3446789999999998 99999999999999999999982 78999999999999999999999999999999
Q ss_pred EEEeeCCC
Q psy2141 106 VGRAITPP 113 (173)
Q Consensus 106 v~~a~~~~ 113 (173)
|+++++++
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99987653
No 123
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=3.4e-20 Score=117.10 Aligned_cols=75 Identities=21% Similarity=0.517 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 34 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
+|||+|||.++++++|+++|++||.|..+.+.+++.+|.++|||||+|.+.++|++|++. ++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999998999999999999999999999975 889999999999875
No 124
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=3e-19 Score=134.23 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||++++|++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred eCC
Q psy2141 110 ITP 112 (173)
Q Consensus 110 ~~~ 112 (173)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 644
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=120.35 Aligned_cols=81 Identities=30% Similarity=0.535 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..+.+.++ +|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999865 789999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
+++....
T Consensus 87 ~~~~~~~ 93 (99)
T 2cpj_A 87 CHSASLT 93 (99)
T ss_dssp SCCSCCC
T ss_pred CCCCCCC
Confidence 8765443
No 126
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=116.15 Aligned_cols=75 Identities=28% Similarity=0.440 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM-NLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l-~g~~i~g~~l~v~~ 108 (173)
.+.++|||+|||.++++++|+++|++||.|..+++.++ +|||||+|.+.++|++|++.| ++..++|++|+|+|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 46789999999999999999999999999999999874 799999999999999999999 99999999999999
Q ss_pred ee
Q psy2141 109 AI 110 (173)
Q Consensus 109 a~ 110 (173)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=1.9e-19 Score=121.92 Aligned_cols=81 Identities=26% Similarity=0.494 Sum_probs=72.8
Q ss_pred hhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
.....+.++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445678999999999999999999999999999999986 68999999999999999999999999999999
Q ss_pred EEEeeCCCC
Q psy2141 106 VGRAITPPN 114 (173)
Q Consensus 106 v~~a~~~~~ 114 (173)
|.++++++.
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999987654
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.8e-20 Score=124.72 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=74.0
Q ss_pred hhCCCCeEEEcCCCCC-CCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC--ceeCCeEE
Q psy2141 28 EAKLYNRIYVASIHPD-LTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL--FDLGGQYL 104 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~-~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g--~~i~g~~l 104 (173)
...+.++|||+|||++ +++++|+++|++||.|..+.+++. ||||||+|.+.++|++|++.|++ ..+.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3567899999999998 999999999999999999999754 79999999999999999998864 56999999
Q ss_pred EEEEeeCCCCCC
Q psy2141 105 RVGRAITPPNAL 116 (173)
Q Consensus 105 ~v~~a~~~~~~~ 116 (173)
+|.+++.+....
T Consensus 95 ~V~~a~~~~~~~ 106 (112)
T 1x4f_A 95 KVDLSEKYKKLV 106 (112)
T ss_dssp EEEEECSCSSSS
T ss_pred EEEECccccccc
Confidence 999998765544
No 129
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.9e-19 Score=115.79 Aligned_cols=80 Identities=23% Similarity=0.493 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+.+ +||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4678999999999999999999999999999999963 49999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q psy2141 110 ITPPNALH 117 (173)
Q Consensus 110 ~~~~~~~~ 117 (173)
++++....
T Consensus 80 ~~~~~~~~ 87 (92)
T 2dgt_A 80 TSRLRTAS 87 (92)
T ss_dssp SCCCSCCC
T ss_pred cCCCCCCC
Confidence 87655543
No 130
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=115.70 Aligned_cols=78 Identities=21% Similarity=0.401 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+++.+ +||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 5688999999999999999999999999999999963 49999999999999999999999999999999999
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
++....
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876443
No 131
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.3e-19 Score=118.93 Aligned_cols=76 Identities=29% Similarity=0.429 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||+|||.++++++|+++|++||.|..+++.+ ++|||||+|.+.++|++|++.|||..++|+.|+|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4478999999999999999999999999999999974 4799999999999999999999999999999999998
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 132
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=6.3e-20 Score=122.63 Aligned_cols=83 Identities=25% Similarity=0.512 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+++++++ +|+++|||||+|.+.++|++|++ ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356899999999999999999999999999999999997 99999999999999999999998 999999999999999
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 865443
No 133
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=3.1e-19 Score=128.39 Aligned_cols=97 Identities=23% Similarity=0.366 Sum_probs=87.1
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
++|+.|+|.++.... ...+.++|||+|||..+++++|+++|++||.|..+.+.+++.+|+++|+|||+|
T Consensus 70 ~~g~~l~v~~~~~~~-----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f 138 (168)
T 1b7f_A 70 VRNKRLKVSYARPGG-----------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 138 (168)
T ss_dssp ETTEECEEEECCCCS-----------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred eCCcEEEEEecCCCc-----------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEE
Confidence 578999998875321 124578999999999999999999999999999999999988999999999999
Q ss_pred cCHHHHHHHHHhcCCceeCC--eEEEEEEe
Q psy2141 82 ETKQASNEAISSMNLFDLGG--QYLRVGRA 109 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g--~~l~v~~a 109 (173)
.+.++|.+|++.|||..+.| ++|+|++|
T Consensus 139 ~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 139 NKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp SSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999988 99999985
No 134
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=119.80 Aligned_cols=79 Identities=18% Similarity=0.442 Sum_probs=73.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
++|||+|||.++++++|+++|++||.|..+.+.++ ++|||||+|.+.++|++|++.|||..+.|+.|+|.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 6899999999999999999999999999999999999877
Q ss_pred CCCC
Q psy2141 113 PNAL 116 (173)
Q Consensus 113 ~~~~ 116 (173)
+...
T Consensus 76 ~~~~ 79 (101)
T 2hvz_A 76 PRRS 79 (101)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 135
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=1.2e-19 Score=136.39 Aligned_cols=100 Identities=26% Similarity=0.422 Sum_probs=86.1
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
++||.|++.++.... .......++|||+|||..+++++|+++|++||.|..++|++++ +.++|||||+|
T Consensus 82 ~~g~~i~~~~~~~~~---------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f 150 (213)
T 4f02_A 82 IKGKPVRIMWSQRDP---------SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 150 (213)
T ss_dssp ETTEECEEEECCCCT---------HHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEE
T ss_pred cCCcccccccccccc---------cccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEe
Confidence 568888887765211 1122356899999999999999999999999999999999984 45799999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
.+.++|++|++.|||..|+|++|+|.+++++
T Consensus 151 ~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 151 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 9999999999999999999999999998764
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=119.56 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|++.|+|..+.|++|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 467899999999999999999999999988777 247889999999999999999999999999999999999999
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
.++...
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 876543
No 137
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.80 E-value=2.8e-19 Score=129.81 Aligned_cols=98 Identities=14% Similarity=0.276 Sum_probs=85.1
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
++|++|+|.++...... ...+.++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|
T Consensus 78 ~~g~~l~v~~~~~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f 143 (175)
T 1fje_B 78 VFGNEIKLEKPKGRDSK---------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEF 143 (175)
T ss_dssp ETTEEEEEECCCCSSCS---------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEEC
T ss_pred eCCeEEEEecCCCcccc---------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEE
Confidence 67999999988643211 12357899999999999999999999999988776 35788999999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCCC
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPP 113 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~ 113 (173)
.+.++|.+|++.|||..++|++|+|+|+.+++
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 144 KSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp SSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 99999999999999999999999999998754
No 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.8e-19 Score=116.47 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=72.9
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhcc--CceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAF--GPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~--G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
..+.++|||+|||.++++++|+++|++| |.|..+++. +|||||+|.+.++|++|++.|||..+.|++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3568999999999999999999999999 999998874 679999999999999999999999999999999
Q ss_pred EEeeCCCCCC
Q psy2141 107 GRAITPPNAL 116 (173)
Q Consensus 107 ~~a~~~~~~~ 116 (173)
.+++++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2cpd_A 84 TLAKPVDKDS 93 (99)
T ss_dssp ECCCCCCCCC
T ss_pred EECCCCCCCC
Confidence 9998765543
No 139
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=119.58 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=72.8
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
....++|||+|||.++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 666543 5789999999999999999999999999999999999
Q ss_pred eeCCCC
Q psy2141 109 AITPPN 114 (173)
Q Consensus 109 a~~~~~ 114 (173)
+++++.
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987643
No 140
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.7e-20 Score=127.24 Aligned_cols=81 Identities=11% Similarity=0.231 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|++|++ ||+..++|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 457899999999999999999999999999886666666799999999999999999999999 9999999999999998
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 141
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=4.1e-20 Score=124.88 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=75.9
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCc---eeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGP---IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~---v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
....++|||+|||+++++++|+++|+.||. |..+.+++++. |+++|||||+|.+.++|++|++ +|+..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 356889999999999999999999999998 89999999976 9999999999999999999998 999999999999
Q ss_pred EEEeeC
Q psy2141 106 VGRAIT 111 (173)
Q Consensus 106 v~~a~~ 111 (173)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999764
No 142
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=3.1e-19 Score=121.71 Aligned_cols=81 Identities=19% Similarity=0.420 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..+.++++ +.++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46789999999999999999999999999999999876 456999999999999999999999999999999999998
Q ss_pred eCCC
Q psy2141 110 ITPP 113 (173)
Q Consensus 110 ~~~~ 113 (173)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7543
No 143
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=9.1e-19 Score=125.59 Aligned_cols=84 Identities=25% Similarity=0.479 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
+.++|||+|||.++++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|++|++.|+|..+.|++|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCCC
Q psy2141 111 TPPN 114 (173)
Q Consensus 111 ~~~~ 114 (173)
+...
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 6543
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=6.9e-19 Score=126.57 Aligned_cols=85 Identities=22% Similarity=0.450 Sum_probs=80.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
+.++|||+|||.++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++.|+|..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999988
Q ss_pred CCCCC
Q psy2141 111 TPPNA 115 (173)
Q Consensus 111 ~~~~~ 115 (173)
+....
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 65443
No 145
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=6.9e-19 Score=126.22 Aligned_cols=97 Identities=19% Similarity=0.342 Sum_probs=85.7
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
++|+.|+|.++.... ...+.++|||+|||..+++++|+++|++||.|..+++..++.+|.++|||||+|
T Consensus 69 ~~g~~l~v~~~~~~~-----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f 137 (167)
T 1fxl_A 69 LQTKTIKVSYARPSS-----------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 137 (167)
T ss_dssp ETTEECEEEECCCCC-----------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred cCCceEEEEecCCCc-----------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEe
Confidence 578889988765211 124578999999999999999999999999999999999988999999999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeE--EEEEEe
Q psy2141 82 ETKQASNEAISSMNLFDLGGQY--LRVGRA 109 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~--l~v~~a 109 (173)
.+.++|.+|++.|||..+.|+. |+|+||
T Consensus 138 ~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 138 DKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp SSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999999965 888875
No 146
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.6e-19 Score=117.81 Aligned_cols=80 Identities=18% Similarity=0.359 Sum_probs=71.8
Q ss_pred hCCCCeEEEcCCCC-CCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 29 AKLYNRIYVASIHP-DLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 29 ~~~~~~l~V~nLp~-~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
..+.++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45789999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q psy2141 108 RAITPPNAL 116 (173)
Q Consensus 108 ~a~~~~~~~ 116 (173)
++++.+...
T Consensus 79 ~a~~~~~~~ 87 (96)
T 2kvi_A 79 VSSSNARPQ 87 (96)
T ss_dssp EEECCCC--
T ss_pred EcCcCCCCC
Confidence 998765543
No 147
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-19 Score=121.14 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
+..++|||+|||.++++++|+++|++||.|..|.+.. ++|||||+|.+.++|++|++.|||..+.|++|+|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999999875 4789999999999999999999999999999999999
Q ss_pred eCC
Q psy2141 110 ITP 112 (173)
Q Consensus 110 ~~~ 112 (173)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 864
No 148
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=118.10 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 111 (173)
.++|||+|||+++++++|+++|+.| .|..+.|++++ +|+++|||||+|.+.++|++|+ .+|+..++|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 89999999997 4999999999999999999999 6899999999999988754
No 149
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=119.68 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=73.5
Q ss_pred hCCCCeEEE--cCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee-----CC
Q psy2141 29 AKLYNRIYV--ASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL-----GG 101 (173)
Q Consensus 29 ~~~~~~l~V--~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i-----~g 101 (173)
..+.++||| |||++++++++|+++|++||.|..+.+..+ ||||||+|.+.++|++|++.|||.++ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 456889999 779999999999999999999999988643 79999999999999999999999998 68
Q ss_pred eEEEEEEeeCCCCCC
Q psy2141 102 QYLRVGRAITPPNAL 116 (173)
Q Consensus 102 ~~l~v~~a~~~~~~~ 116 (173)
++|.|.+++..+...
T Consensus 96 ~~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSG 110 (114)
T ss_dssp EECEEEEESCCCCSS
T ss_pred cEEEEEecccCcccC
Confidence 999999998665544
No 150
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7e-19 Score=115.60 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCc-eeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC-ceeCCeEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGP-IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL-FDLGGQYLRVG 107 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~-v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g-~~i~g~~l~v~ 107 (173)
.+.++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..++|++|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 6666552 479999999999999999999999 99999999999
Q ss_pred EeeCCCCCC
Q psy2141 108 RAITPPNAL 116 (173)
Q Consensus 108 ~a~~~~~~~ 116 (173)
+++++....
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 998765543
No 151
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.5e-19 Score=121.22 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=71.6
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcC----HHH----HHHHHH--hcCCce
Q psy2141 33 NRIYVASI----HPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET----KQA----SNEAIS--SMNLFD 98 (173)
Q Consensus 33 ~~l~V~nL----p~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~----~~~----a~~a~~--~l~g~~ 98 (173)
.+|||+|| |+.+++.+|+.+|+.||.|.++.++.|+.||.++|||||+|.+ .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788988 789999
Q ss_pred eCCeEEEEEEee
Q psy2141 99 LGGQYLRVGRAI 110 (173)
Q Consensus 99 i~g~~l~v~~a~ 110 (173)
|+|++|+|.+.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=114.07 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||+|||.++++++|+++|++||.|..| +.++.+++ ||||+|.+.++|++|++ |||..++|+.|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356899999999999999999999999999987 55555555 99999999999999999 9999999999999988
Q ss_pred eCCCCC
Q psy2141 110 ITPPNA 115 (173)
Q Consensus 110 ~~~~~~ 115 (173)
.++...
T Consensus 80 ~~~~~~ 85 (94)
T 2e5g_A 80 EQKEFQ 85 (94)
T ss_dssp CCSCCC
T ss_pred CcCCCC
Confidence 655443
No 153
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=8.5e-19 Score=128.62 Aligned_cols=82 Identities=16% Similarity=0.320 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||..+++++|+++|++||.|..|.+..++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred eCC
Q psy2141 110 ITP 112 (173)
Q Consensus 110 ~~~ 112 (173)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 754
No 154
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=127.65 Aligned_cols=85 Identities=24% Similarity=0.301 Sum_probs=73.5
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEE--EccC---CCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCK--LQQG---SSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQY 103 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~--i~~~---~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~ 103 (173)
..+.++|||+|||+.+++++|+++|++||.|..+. ++.+ ..+|+++|||||+|.+.++|.+|++.|||..+.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 35678999999999999999999999999987641 1111 247889999999999999999999999999999999
Q ss_pred EEEEEeeCCC
Q psy2141 104 LRVGRAITPP 113 (173)
Q Consensus 104 l~v~~a~~~~ 113 (173)
|+|.++++..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997643
No 155
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.77 E-value=1.4e-18 Score=136.02 Aligned_cols=107 Identities=19% Similarity=0.278 Sum_probs=87.7
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCC-CCHHHHHHHhhccCceeEEEEccCCC-CCCcceEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPD-LTEEDIKSVFEAFGPIKYCKLQQGSS-PHRHKGYGFI 79 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~~e~~L~~~F~~~G~v~~~~i~~~~~-~g~~~g~afv 79 (173)
++|+.|+|.++........ ......+.++|||+|||.. +++++|+++|++||.|..++++++.. +|.++|||||
T Consensus 184 ~~g~~l~v~~a~~~~~~~~----~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV 259 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSKR----TDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFM 259 (292)
T ss_dssp ETTEECEEEECCCC-------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEE
T ss_pred eCCcEEEEEECCCCccccc----ccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEE
Confidence 6789999987653221111 1123456799999999999 99999999999999999999999865 5999999999
Q ss_pred EEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCC
Q psy2141 80 EYETKQASNEAISSMNLFDLGGQYLRVGRAITPP 113 (173)
Q Consensus 80 ~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~ 113 (173)
+|.+.++|.+|+ .|||..++|++|+|.|+.+++
T Consensus 260 ~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 260 VFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp EESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred EeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 999999999999 999999999999999998764
No 156
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=120.17 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=73.7
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCce----eEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPI----KYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v----~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l 104 (173)
....++|||+|||+++++++|+++|++||.| ..|.|+++ .+|+++|||||+|.+.++|++|++. |+..++|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999875 68999998 4899999999999999999999986 9999999999
Q ss_pred EEEEee
Q psy2141 105 RVGRAI 110 (173)
Q Consensus 105 ~v~~a~ 110 (173)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 998875
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=3.7e-18 Score=123.14 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEEe
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG--QYLRVGRA 109 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g--~~l~v~~a 109 (173)
..+|||+||++.+++++|+++|++||.|.++.+..+ .++|||||+|.+.++|++|++.|||..|.| ++|+|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 457899999999999999999999999999998654 257999999999999999999999999965 99999999
Q ss_pred eCCCC
Q psy2141 110 ITPPN 114 (173)
Q Consensus 110 ~~~~~ 114 (173)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 87643
No 158
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=2e-18 Score=112.43 Aligned_cols=76 Identities=20% Similarity=0.367 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
...++|||+|||+++++++|+++|++| .|..+++. +++|||||+|.+.++|++|++.|||..++|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999884 46899999999999999999999999999999999998
Q ss_pred eCC
Q psy2141 110 ITP 112 (173)
Q Consensus 110 ~~~ 112 (173)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 159
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.76 E-value=2.3e-18 Score=134.26 Aligned_cols=104 Identities=22% Similarity=0.318 Sum_probs=90.4
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCC-CHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDL-TEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIE 80 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~ 80 (173)
++|+.|+|.++.... ......+.++|||+|||..+ ++++|+++|+.||.|..+++..++ +|+++|+|||+
T Consensus 162 ~~g~~i~v~~a~~~~--------~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~ 232 (284)
T 3smz_A 162 LGPRTLYVHWTDAGQ--------LTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLE 232 (284)
T ss_dssp ETTEECEEEECCGGG--------CCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEE
T ss_pred eCCcEEEEEECCCCC--------CCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEE
Confidence 688999998875321 11223568899999999995 999999999999999999999985 89999999999
Q ss_pred EcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCC
Q psy2141 81 YETKQASNEAISSMNLFDLGGQYLRVGRAITPPN 114 (173)
Q Consensus 81 f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~ 114 (173)
|.+.++|.+|++.|||..++|++|+|.++.++..
T Consensus 233 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 233 YETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred eCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999999999999999999999999976543
No 160
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=114.52 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEE-EEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYC-KLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~-~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
...++|||+|||+++++++|+++|++||.|..+ .++.++.++ .|||+|.+.++|++|++.|||..++|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999 588876443 399999999999999999999999999999999
Q ss_pred eeCC
Q psy2141 109 AITP 112 (173)
Q Consensus 109 a~~~ 112 (173)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9876
No 161
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=3.1e-19 Score=126.04 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=75.3
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
....++|||+|||+++++++|+++|++|| |..|.|++++. |+++|||||+|.+.++|++|+ .+|+..++|+.|+|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 35678999999999999999999999999 77999999975 999999999999999999999 8899999999999999
Q ss_pred eeCCCC
Q psy2141 109 AITPPN 114 (173)
Q Consensus 109 a~~~~~ 114 (173)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876544
No 162
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.6e-18 Score=112.19 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|| ++++++|+++|++||.|..+.+. +++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 89999999999999999999984 35899999999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
++++...
T Consensus 85 ~~~~~~~ 91 (97)
T 1x5p_A 85 RKQPMLD 91 (97)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 8765543
No 163
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=3.4e-18 Score=141.36 Aligned_cols=84 Identities=25% Similarity=0.452 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
+.++|||+|||..+++++|+.+|++||.|..|.|+.++.+|+++|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q psy2141 111 TPPN 114 (173)
Q Consensus 111 ~~~~ 114 (173)
+...
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 6543
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=3.5e-18 Score=125.91 Aligned_cols=83 Identities=20% Similarity=0.545 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|++|++. ++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4578999999999999999999999999999999999998999999999999999999999977 899999999999998
Q ss_pred eCCC
Q psy2141 110 ITPP 113 (173)
Q Consensus 110 ~~~~ 113 (173)
....
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 7653
No 165
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=7.7e-18 Score=117.24 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceE-EEEEEcCHHHHHHHHHhcCCceeCC--eEEEEE
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY-GFIEYETKQASNEAISSMNLFDLGG--QYLRVG 107 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~-afv~f~~~~~a~~a~~~l~g~~i~g--~~l~v~ 107 (173)
+--.|||+||++.+++++|+++|++||.|.++.+..+ .+|| |||+|.+.++|++|++.|||..|.| ++|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3457889999999999999999999999999988764 3688 9999999999999999999999988 999999
Q ss_pred EeeCCCCCC
Q psy2141 108 RAITPPNAL 116 (173)
Q Consensus 108 ~a~~~~~~~ 116 (173)
|+++..-..
T Consensus 102 ~ak~~~l~v 110 (130)
T 3zzy_A 102 FSKLTSLNV 110 (130)
T ss_dssp ECSCSSCCC
T ss_pred ecCCCceeE
Confidence 998764433
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=5.1e-18 Score=110.95 Aligned_cols=77 Identities=14% Similarity=0.344 Sum_probs=63.3
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCce--eCCeEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFD--LGGQYLRV 106 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~--i~g~~l~v 106 (173)
..+..+|||+|||+++++++|+++|++||.|.+++++++ ++|||||+|.+.++|++ |++.. +.|++|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 357899999999999999999999999999999999875 69999999999999984 45544 56999999
Q ss_pred EEeeCCCC
Q psy2141 107 GRAITPPN 114 (173)
Q Consensus 107 ~~a~~~~~ 114 (173)
.++.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987644
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.3e-18 Score=114.98 Aligned_cols=76 Identities=20% Similarity=0.460 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCC---CCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSP---HRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~---g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4679999999999999999999999999999 888888777 7999999999999999999999983 355555555
Q ss_pred EE
Q psy2141 107 GR 108 (173)
Q Consensus 107 ~~ 108 (173)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 168
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.4e-18 Score=120.68 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=72.7
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCcee--EEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIK--YCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~--~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v 106 (173)
..+.++|||+|||+++++++|+++|++| .|. .|+|++++. |+++|||||+|.+.++|++|++. ++..++|+.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3467899999999999999999999999 576 899999976 99999999999999999999975 779999999999
Q ss_pred EEeeC
Q psy2141 107 GRAIT 111 (173)
Q Consensus 107 ~~a~~ 111 (173)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.3e-18 Score=120.42 Aligned_cols=81 Identities=22% Similarity=0.442 Sum_probs=75.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITP 112 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 112 (173)
++|||+|||.++++++|+++|++||.|..+++.+++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999996 5789999999999999999999999999999999999998765
Q ss_pred CC
Q psy2141 113 PN 114 (173)
Q Consensus 113 ~~ 114 (173)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 170
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=112.23 Aligned_cols=79 Identities=10% Similarity=0.141 Sum_probs=69.6
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhhcc-CceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q psy2141 30 KLYNR-IYVASIHPDLTEED----IKSVFEAF-GPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQY 103 (173)
Q Consensus 30 ~~~~~-l~V~nLp~~~~e~~----L~~~F~~~-G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~ 103 (173)
.+..+ |||+|||+.+++++ |+++|++| |+|.++ ++ |+|||+|.+.++|++|++.|+|..+.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34566 99999999999987 56899999 599998 33 99999999999999999999999999999
Q ss_pred EEEEEeeCCCCCCCC
Q psy2141 104 LRVGRAITPPNALHS 118 (173)
Q Consensus 104 l~v~~a~~~~~~~~~ 118 (173)
|+|++++..++....
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999987766543
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=7.3e-18 Score=126.30 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=72.4
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 31 LYNRIYVASIH-PDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 31 ~~~~l~V~nLp-~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
+.++|||+||| +.+++++|+++|++||.|.++++++++ +|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 899999999999999999999998763 799999999999999999999999999999999998
Q ss_pred eCC
Q psy2141 110 ITP 112 (173)
Q Consensus 110 ~~~ 112 (173)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 172
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.74 E-value=1e-17 Score=130.56 Aligned_cols=96 Identities=25% Similarity=0.332 Sum_probs=87.6
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
++|+.|+|.+.. +.++|||+|||..+++++|+++|+.||.|..+.+++++.+|.++|||||+|
T Consensus 82 ~~g~~i~v~~~~-----------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f 144 (284)
T 3smz_A 82 LRERELSVQLQP-----------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEY 144 (284)
T ss_dssp ETTEECEEEECC-----------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred eCCeEEEEEecC-----------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEE
Confidence 567788887642 458999999999999999999999999999999999988999999999999
Q ss_pred cCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCC
Q psy2141 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPN 114 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~ 114 (173)
.+.++|.+|++.|+|..++|++|.|.++.+...
T Consensus 145 ~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 145 MKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999999999976543
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=4.1e-18 Score=127.30 Aligned_cols=85 Identities=38% Similarity=0.663 Sum_probs=76.4
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
...+.++|||+|||.++++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred EeeCC
Q psy2141 108 RAITP 112 (173)
Q Consensus 108 ~a~~~ 112 (173)
++...
T Consensus 104 ~~~~~ 108 (216)
T 2qfj_A 104 RPSNI 108 (216)
T ss_dssp CCSCC
T ss_pred cCCCc
Confidence 86543
No 174
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=6.3e-18 Score=115.54 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeE-----E
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQY-----L 104 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~-----l 104 (173)
...++|||+|||+++++++|+++|++||.|..+.++.+ |||||+|.+.++|++|++.|||..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999765 89999999999999999999999999988 7
Q ss_pred EEEEeeCCC
Q psy2141 105 RVGRAITPP 113 (173)
Q Consensus 105 ~v~~a~~~~ 113 (173)
+|..+.+..
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 777766543
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=7.2e-18 Score=109.17 Aligned_cols=72 Identities=28% Similarity=0.527 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCce
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAF----G-------PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFD 98 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~----G-------~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~ 98 (173)
.+.++|||+|||.++++++|+++|++| | .|..+.+.++ +|||||+|.+.++|++|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999998765 799999999999999999 999999
Q ss_pred eCCeEEEEEE
Q psy2141 99 LGGQYLRVGR 108 (173)
Q Consensus 99 i~g~~l~v~~ 108 (173)
+.|+.|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.73 E-value=9.5e-18 Score=124.61 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=74.0
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
....++|||+|||+++++++|+++|++||.|..+++.+++ +|.++|||||+|.+.++|++|+..++ ..++|++|.|.+
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~ 183 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILF 183 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEE
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEE
Confidence 3457899999999999999999999999999999999985 69999999999999999999997765 599999999998
Q ss_pred eeC
Q psy2141 109 AIT 111 (173)
Q Consensus 109 a~~ 111 (173)
++.
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 764
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=1e-17 Score=115.63 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=71.0
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|+ ++++++|+++|++||.|..|.+. .++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999996 69999999999999999999985 3589999999999999999999999999999999999
Q ss_pred eeCCCCC
Q psy2141 109 AITPPNA 115 (173)
Q Consensus 109 a~~~~~~ 115 (173)
+++++..
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9876443
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.4e-18 Score=109.12 Aligned_cols=80 Identities=14% Similarity=0.314 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..++++++ ++|||||+|.+.++|++++.. ...+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35799999999999999999999999999999999865 689999999999999765322 34568999999999
Q ss_pred eCCCCCC
Q psy2141 110 ITPPNAL 116 (173)
Q Consensus 110 ~~~~~~~ 116 (173)
.++....
T Consensus 76 ~~~~~~~ 82 (88)
T 1wf0_A 76 EPKHNSN 82 (88)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8765544
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=1.5e-17 Score=120.18 Aligned_cols=79 Identities=24% Similarity=0.448 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC---CeEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG---GQYLRV 106 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~---g~~l~v 106 (173)
.+.++|||+|||..+++++|+++|++||.|..+.+.+++ +|+++|||||+|.+.++|.+|++.|||..+. +++|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 357899999999999999999999999999999999995 6999999999999999999999999998776 399999
Q ss_pred EEe
Q psy2141 107 GRA 109 (173)
Q Consensus 107 ~~a 109 (173)
+|+
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=2e-17 Score=128.69 Aligned_cols=76 Identities=14% Similarity=0.320 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG-GQYLRVGR 108 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~-g~~l~v~~ 108 (173)
.+.++|||+|||..+++++|+++|++||.|..++++.++ +|||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 357889999999999999999999999999999998764 689999999999999999999999999 99999999
Q ss_pred ee
Q psy2141 109 AI 110 (173)
Q Consensus 109 a~ 110 (173)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3.5e-17 Score=113.24 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=68.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceE-EEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEEee
Q psy2141 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGY-GFIEYETKQASNEAISSMNLFDLGG--QYLRVGRAI 110 (173)
Q Consensus 34 ~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~-afv~f~~~~~a~~a~~~l~g~~i~g--~~l~v~~a~ 110 (173)
.|||+||++.+++++|+++|++||.|.++.+... .|| |||+|.+.++|++|++.|||..|.| ++|+|.+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4789999999999999999999999999998652 276 9999999999999999999999987 699999998
Q ss_pred CCCCC
Q psy2141 111 TPPNA 115 (173)
Q Consensus 111 ~~~~~ 115 (173)
++.-.
T Consensus 101 ~~~l~ 105 (124)
T 2e5i_A 101 PTRLN 105 (124)
T ss_dssp CSCCC
T ss_pred CCcce
Confidence 76533
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=4.4e-17 Score=123.63 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG-GQYLRVG 107 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G-~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~-g~~l~v~ 107 (173)
.+.++|||+|||..+++++|+++|++|| .|..++++.+ .+|+|||+|.+.++|.+|++.|||..++ |++|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999664 3789999999999999999999999999 9999999
Q ss_pred EeeCC
Q psy2141 108 RAITP 112 (173)
Q Consensus 108 ~a~~~ 112 (173)
|++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98764
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=8.3e-17 Score=108.37 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhccCceeEEEEccCCCC-CCcceEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q psy2141 30 KLYNRIYVASIHP-----DLTEEDIKSVFEAFGPIKYCKLQQGSSP-HRHKGYGFIEYETKQASNEAISSMNLFDLGGQY 103 (173)
Q Consensus 30 ~~~~~l~V~nLp~-----~~~e~~L~~~F~~~G~v~~~~i~~~~~~-g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~ 103 (173)
.++++|+|.||.. +-++++|++.|++||.|.++.+.+++.+ ++++||+||+|.+.++|.+|++.|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5789999999963 2368999999999999999999998644 688999999999999999999999999999999
Q ss_pred EEEEEeeC
Q psy2141 104 LRVGRAIT 111 (173)
Q Consensus 104 l~v~~a~~ 111 (173)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=4.4e-17 Score=126.82 Aligned_cols=84 Identities=20% Similarity=0.437 Sum_probs=76.9
Q ss_pred hhCCCCeEEEcCCCCCCCHHHHH----HHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q psy2141 28 EAKLYNRIYVASIHPDLTEEDIK----SVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQY 103 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~e~~L~----~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~ 103 (173)
+..+.++|||+|||.++++++|+ ++|++||.|..|++.+ +++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34678999999999999999976 8999999999999876 6789999999999999999999999999999999
Q ss_pred EEEEEeeCCCC
Q psy2141 104 LRVGRAITPPN 114 (173)
Q Consensus 104 l~v~~a~~~~~ 114 (173)
|+|.+++....
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999976553
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.7e-17 Score=119.23 Aligned_cols=79 Identities=22% Similarity=0.508 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
+.++|||+|||.++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999998999999999999999999999985 578999999998875
Q ss_pred C
Q psy2141 111 T 111 (173)
Q Consensus 111 ~ 111 (173)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=121.78 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEE
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG-GQYLRVG 107 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G-~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~-g~~l~v~ 107 (173)
.+.++|||+|||..+++++|+++|++|| .|..++++.+ .+|+|||+|.+.++|.+|++.|||..++ |++|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999765 2799999999999999999999999999 9999999
Q ss_pred EeeCC
Q psy2141 108 RAITP 112 (173)
Q Consensus 108 ~a~~~ 112 (173)
|++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98764
No 187
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=3e-17 Score=118.53 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCC--CcceEEEEEEcCHHHHHHHHHhcCCceeC---CeEEE
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH--RHKGYGFIEYETKQASNEAISSMNLFDLG---GQYLR 105 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g--~~~g~afv~f~~~~~a~~a~~~l~g~~i~---g~~l~ 105 (173)
+.++|||+|||.++++++|+++|++||.|..+++++++.++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998776 89999999999999999999999998876 57888
Q ss_pred EEEeeCCCC
Q psy2141 106 VGRAITPPN 114 (173)
Q Consensus 106 v~~a~~~~~ 114 (173)
+.++.....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888765443
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=2.2e-17 Score=126.18 Aligned_cols=82 Identities=27% Similarity=0.377 Sum_probs=71.5
Q ss_pred hCCCCeEEEcCCCCCC---------CHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee
Q psy2141 29 AKLYNRIYVASIHPDL---------TEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL 99 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~---------~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i 99 (173)
....++||||||+..+ +|++|+++|++||.|..|+++.+ +|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred ------------CCeEEEEEEeeCCCCCC
Q psy2141 100 ------------GGQYLRVGRAITPPNAL 116 (173)
Q Consensus 100 ------------~g~~l~v~~a~~~~~~~ 116 (173)
.|+.|.|+|++..+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC------
T ss_pred eccccccccccCCCCEEEEEEccCCCCHH
Confidence 89999999998765543
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=4e-17 Score=122.29 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCce--eEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCe----E
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPI--KYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQ----Y 103 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v--~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~----~ 103 (173)
.+.++|||+|||+++++++|+++|++||.| ..+++..++ +.++|+|||+|.+.++|.+|+..|||..+.|+ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 356799999999999999999999999999 899998874 55679999999999999999999999999886 6
Q ss_pred EEEEEe
Q psy2141 104 LRVGRA 109 (173)
Q Consensus 104 l~v~~a 109 (173)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.68 E-value=9.8e-17 Score=125.41 Aligned_cols=83 Identities=11% Similarity=0.225 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G-~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
+.++|||+|||..+++++|+++|+.|| .|..+.++.++ .|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 99999999986 4889999999999999999999999999999999999998
Q ss_pred eCCCC
Q psy2141 110 ITPPN 114 (173)
Q Consensus 110 ~~~~~ 114 (173)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76543
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.68 E-value=1.3e-16 Score=123.35 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=82.6
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEE
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f 81 (173)
|+|+.|+|.++. +.++|||+|||..+++++|+++|+.||.|..+.++.+ .+|+++|||||+|
T Consensus 83 i~g~~l~v~~a~-----------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f 144 (261)
T 3sde_A 83 LKSRPLRIRFAT-----------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEF 144 (261)
T ss_dssp ETTEECEEEECC-----------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEE
T ss_pred ECCceeEeeecc-----------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEe
Confidence 567888888764 4679999999999999999999999999999999999 5899999999999
Q ss_pred cCHHHHHHHHHhcCC-ceeC---CeEEEEEEeeCC
Q psy2141 82 ETKQASNEAISSMNL-FDLG---GQYLRVGRAITP 112 (173)
Q Consensus 82 ~~~~~a~~a~~~l~g-~~i~---g~~l~v~~a~~~ 112 (173)
.+.++|.+|++.||+ ..+. +++|.|.++...
T Consensus 145 ~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 145 AAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999999999954 4444 899999998754
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.1e-16 Score=119.87 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=74.3
Q ss_pred hCCCCeEEEcCCCC-CCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q psy2141 29 AKLYNRIYVASIHP-DLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVG 107 (173)
Q Consensus 29 ~~~~~~l~V~nLp~-~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 107 (173)
..+.++|||+|||. ++++++|+++|++||.|..+++.+++ +|||||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35689999999999 99999999999999999999999885 7899999999999999999999999999999999
Q ss_pred EeeCC
Q psy2141 108 RAITP 112 (173)
Q Consensus 108 ~a~~~ 112 (173)
+++..
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98765
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=3.9e-17 Score=118.39 Aligned_cols=84 Identities=7% Similarity=0.244 Sum_probs=73.6
Q ss_pred hCCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q psy2141 29 AKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGR 108 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 108 (173)
..+.++|||+|||.++++++|+++|+.||.+.. .++.+..+|.++|||||+|.+.++|++|+ .|||..+.|++|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 356899999999999999999999999998766 34445567889999999999999999999 5999999999999999
Q ss_pred eeCCCC
Q psy2141 109 AITPPN 114 (173)
Q Consensus 109 a~~~~~ 114 (173)
+.+...
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 876543
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=115.91 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 31 LYNRIYVASIHP-DLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 31 ~~~~l~V~nLp~-~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
..++|||+|||. ++++++|+++|++||.|..+++++++ +|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999999875 789999999999999999999999999999999998
Q ss_pred eCCC
Q psy2141 110 ITPP 113 (173)
Q Consensus 110 ~~~~ 113 (173)
....
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-15 Score=101.84 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCce
Q psy2141 30 KLYNRIYVASIHPDLT-----------EEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFD 98 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~-----------e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~ 98 (173)
.+.++|+|.||..... +++|+++|++||.|..+.| .++ .++|||||+|.+.++|++|++.|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4689999999954332 5799999999999999966 553 379999999999999999999999999
Q ss_pred eCCeEEEEEEeeCCCCC
Q psy2141 99 LGGQYLRVGRAITPPNA 115 (173)
Q Consensus 99 i~g~~l~v~~a~~~~~~ 115 (173)
++|++|+|.++.+....
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999999875543
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=1.3e-15 Score=117.62 Aligned_cols=76 Identities=28% Similarity=0.461 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEe
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 109 (173)
.+.++|||+|||.++++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45689999999999999999999999999999999654 799999999999999999999999999999999998
Q ss_pred eC
Q psy2141 110 IT 111 (173)
Q Consensus 110 ~~ 111 (173)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=2.3e-15 Score=101.26 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=71.3
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHhhccCceeEEEEccCCCC--CCcceEEEEEEcCHHHHHHHHHhcCCc
Q psy2141 30 KLYNRIYVASI--HPDLT--------EEDIKSVFEAFGPIKYCKLQQGSSP--HRHKGYGFIEYETKQASNEAISSMNLF 97 (173)
Q Consensus 30 ~~~~~l~V~nL--p~~~~--------e~~L~~~F~~~G~v~~~~i~~~~~~--g~~~g~afv~f~~~~~a~~a~~~l~g~ 97 (173)
.+++.|.+.|+ |.++. +++|++.|++||.|.++.|.+++.+ ++++|++||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 33443 3689999999999999999998654 467999999999999999999999999
Q ss_pred eeCCeEEEEEEeeC
Q psy2141 98 DLGGQYLRVGRAIT 111 (173)
Q Consensus 98 ~i~g~~l~v~~a~~ 111 (173)
.++||.|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999753
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=2.7e-15 Score=108.14 Aligned_cols=75 Identities=27% Similarity=0.490 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAF----G-------PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL 99 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~----G-------~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i 99 (173)
+.++|||+|||.++++++|+++|++| | .|..+.+.+ ++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 777777654 3799999999999999999 8999999
Q ss_pred CCeEEEEEEeeCC
Q psy2141 100 GGQYLRVGRAITP 112 (173)
Q Consensus 100 ~g~~l~v~~a~~~ 112 (173)
.|++|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=6.7e-16 Score=103.71 Aligned_cols=72 Identities=10% Similarity=0.280 Sum_probs=63.7
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q psy2141 37 VASIHPDLTEEDIKSVF------------EAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYL 104 (173)
Q Consensus 37 V~nLp~~~~e~~L~~~F------------~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l 104 (173)
+.+|++.+++++|++.| ++||.|.++.+.+++ +++++|||||+|.+.++|.+|++.|||..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777776666 999999999999985 57899999999999999999999999999999999
Q ss_pred EEEEe
Q psy2141 105 RVGRA 109 (173)
Q Consensus 105 ~v~~a 109 (173)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99985
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=6.1e-15 Score=108.54 Aligned_cols=75 Identities=25% Similarity=0.506 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAF----G-------PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL 99 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~----G-------~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i 99 (173)
..++|||+|||.++++++|+++|++| | .|..+.+. +++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999999 5 56666653 45899999999999999999 8999999
Q ss_pred CCeEEEEEEeeCC
Q psy2141 100 GGQYLRVGRAITP 112 (173)
Q Consensus 100 ~g~~l~v~~a~~~ 112 (173)
.|++|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998764
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=9.1e-15 Score=100.31 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCC--CC---CHHHHHHHhhccCceeEEEEccCCC----CCCcceEEEEEEcCHHHHHHHHHhcCCceeC
Q psy2141 30 KLYNRIYVASIHP--DL---TEEDIKSVFEAFGPIKYCKLQQGSS----PHRHKGYGFIEYETKQASNEAISSMNLFDLG 100 (173)
Q Consensus 30 ~~~~~l~V~nLp~--~~---~e~~L~~~F~~~G~v~~~~i~~~~~----~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~ 100 (173)
.++++|++.|+-. ++ .+++|++.|++||.|.++.|.+++. +++++|++||+|.+.++|.+|++.|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4789999999942 22 3689999999999999999998854 4567899999999999999999999999999
Q ss_pred CeEEEEEEeeC
Q psy2141 101 GQYLRVGRAIT 111 (173)
Q Consensus 101 g~~l~v~~a~~ 111 (173)
|+.|+|.+...
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999753
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=2.5e-14 Score=114.50 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=66.2
Q ss_pred hCCCCeEEEcC--CCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeC---Ce-
Q psy2141 29 AKLYNRIYVAS--IHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLG---GQ- 102 (173)
Q Consensus 29 ~~~~~~l~V~n--Lp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~---g~- 102 (173)
..++++||||| |+..++|++|+++|++||.|..+.+.. +||||||+|.+.++|++|++.|||.++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 46789999999 578999999999999999999988754 4799999999999999999999998883 44
Q ss_pred -EEEEEEee
Q psy2141 103 -YLRVGRAI 110 (173)
Q Consensus 103 -~l~v~~a~ 110 (173)
.|.+.+..
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57778764
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.1e-14 Score=93.43 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEeeCCCCCC
Q psy2141 42 PDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116 (173)
Q Consensus 42 ~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~ 116 (173)
..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|++|++.+++ +.|++|+|.|+++++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCC
Confidence 468999999999999999999987 35799999999999999999998655 679999999998765443
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.43 E-value=1e-12 Score=89.42 Aligned_cols=78 Identities=10% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCcee
Q psy2141 30 KLYNRIYVASIHPDLT----------EEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDL 99 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~----------e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i 99 (173)
.+++.|.+.|+=..-. +++|++.|++||.|.++.+.++. .+|++||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3577888888843211 25789999999999999997663 589999999999999999999999999
Q ss_pred CCeEEEEEEeeC
Q psy2141 100 GGQYLRVGRAIT 111 (173)
Q Consensus 100 ~g~~l~v~~a~~ 111 (173)
+|+.|+|.+...
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999853
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-11 Score=79.80 Aligned_cols=73 Identities=10% Similarity=0.208 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2141 30 KLYNRIYVASIH----PDLTE----EDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG 101 (173)
Q Consensus 30 ~~~~~l~V~nLp----~~~~e----~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g 101 (173)
++..||+|..++ .++.. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 567889998876 23434 5799999999999999999873 8999999999999998 99999999
Q ss_pred eEEEEEEeeC
Q psy2141 102 QYLRVGRAIT 111 (173)
Q Consensus 102 ~~l~v~~a~~ 111 (173)
+.|+|+.+.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999875
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=5.4e-11 Score=81.44 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=66.3
Q ss_pred hCCCCeEEEcCCCCC-CCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcC-HHHHHHHHHhcC--CceeCCeEE
Q psy2141 29 AKLYNRIYVASIHPD-LTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYET-KQASNEAISSMN--LFDLGGQYL 104 (173)
Q Consensus 29 ~~~~~~l~V~nLp~~-~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~-~~~a~~a~~~l~--g~~i~g~~l 104 (173)
..+.+.|||+||+.+ +++++|+++|++||.|..|.+.++. -.|||.|.+ .++|..|++.|+ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 357899999999999 9999999999999999999998884 259999999 899999999995 678888887
Q ss_pred EEEEe
Q psy2141 105 RVGRA 109 (173)
Q Consensus 105 ~v~~a 109 (173)
++...
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.3e-10 Score=75.65 Aligned_cols=74 Identities=11% Similarity=0.298 Sum_probs=63.6
Q ss_pred hhCCCCeEEEcCCCCC-----CCH----HHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCce
Q psy2141 28 EAKLYNRIYVASIHPD-----LTE----EDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFD 98 (173)
Q Consensus 28 ~~~~~~~l~V~nLp~~-----~~e----~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~ 98 (173)
..++..||+|..++.. +.. .+|.+.|+.||.|..+++..++ +||+|.+.++|.+|++ |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3467899999888742 322 4689999999999999999883 9999999999999998 99999
Q ss_pred eCCeEEEEEEee
Q psy2141 99 LGGQYLRVGRAI 110 (173)
Q Consensus 99 i~g~~l~v~~a~ 110 (173)
++|+.|+|++..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998854
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.09 E-value=2.4e-10 Score=85.88 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCHHHHHHHhhccCceeEEEEccC----CCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 44 LTEEDIKSVFEAFGPIKYCKLQQG----SSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 44 ~~e~~L~~~F~~~G~v~~~~i~~~----~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
-.+++|++.|++||.|..+.+.++ +.+++++|++||+|.+.++|.+|++.|||..++||.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 346789999999999999999854 3455899999999999999999999999999999999999965
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.4e-08 Score=66.33 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-----CceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAF-----GPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~-----G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
..++|-+-|||..+++..++.+.+++ |.+..+.+..|. +-|+|+|.+...|.+|.-.|+|.++.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47889999999999999999999999 999999998883 6799999999999999999999999999999
Q ss_pred EEE
Q psy2141 106 VGR 108 (173)
Q Consensus 106 v~~ 108 (173)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.07 E-value=2.4e-05 Score=51.53 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 31 LYNRIYVASIHPDL-TE----EDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 31 ~~~~l~V~nLp~~~-~e----~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
-.++|+|.||+.++ .. +.++++|..|+++.....++.- .-..|.|.+.++|.+|-..||+..++|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 46789999998754 22 4679999999999888777652 2468999999999999999999999999999
Q ss_pred EEEeeCCC
Q psy2141 106 VGRAITPP 113 (173)
Q Consensus 106 v~~a~~~~ 113 (173)
|-++.+.+
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99988543
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=0.0015 Score=42.90 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc-----cCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEA-----FGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLR 105 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~-----~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~ 105 (173)
..++|.|.|||..+.++.|.-+|+. -|.|..++... +-|+|+|.+...+++.++. ..+.+.+.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4678999999999999999999987 25888887632 5789999999999999854 45788899999
Q ss_pred EEEeeC
Q psy2141 106 VGRAIT 111 (173)
Q Consensus 106 v~~a~~ 111 (173)
|....+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 966443
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.59 E-value=0.00046 Score=44.46 Aligned_cols=69 Identities=9% Similarity=0.212 Sum_probs=57.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCC--cceEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHR--HKGYGFIEYETKQASNEAISSMNLFDLGG 101 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~--~~g~afv~f~~~~~a~~a~~~l~g~~i~g 101 (173)
++|.|.+||+.++|+++.+.++....+.....+..+.+.+ .-.-|+|.|.+.+++..-.+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5789999999999999999999988877776666543332 34568999999999999999999987754
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.20 E-value=0.0011 Score=43.03 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhc
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 94 (173)
.+.+++ ..|.++...||.++|+.|| -..|+.+-| --|||.|.+.+.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 456677 9999999999999999998 344555555 27999999999999999876
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.06 E-value=0.0029 Score=42.63 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=56.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCC-eEEEEEEe
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGG-QYLRVGRA 109 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g-~~l~v~~a 109 (173)
..+.|.|-+.|... -..+...|++||.|.+.... ....+-.|.|.+..+|++|+.. ||..++| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 46788899999884 56677799999999988762 1357999999999999999955 9999986 45566554
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.90 E-value=0.0016 Score=42.32 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=45.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcC
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMN 95 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 95 (173)
+.++| +.|.++...+|.++|+.|| -..|+.+-| --|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999998 455666655 279999999999999998764
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.81 E-value=0.0047 Score=40.09 Aligned_cols=70 Identities=9% Similarity=0.137 Sum_probs=50.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCC--cceEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHR--HKGYGFIEYETKQASNEAISSMNLFDLGG 101 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~--~~g~afv~f~~~~~a~~a~~~l~g~~i~g 101 (173)
.-+|.|++||+.+||+++.+.++..-.+.....+..+.+.+ .-.-|+|.|.+.++...-.+..+|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45799999999999999888887654443333333222221 22458999999999999999999977644
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.30 E-value=0.0025 Score=52.70 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=43.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHh
Q psy2141 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93 (173)
Q Consensus 30 ~~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 93 (173)
...++|+|. .|...++.+|.++|++||+|..+.+-.++ .-|+.|+|.+.+++..++..
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 347899997 79999999999999999999998776553 47999999999998877643
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.23 E-value=0.0082 Score=41.04 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=54.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceeE-EEEccCC------------CCC-CcceEEEEEEcCHHHHHHHHHhcCC
Q psy2141 31 LYNRIYVASIHPDLTEEDIKSVFEAFGPIKY-CKLQQGS------------SPH-RHKGYGFIEYETKQASNEAISSMNL 96 (173)
Q Consensus 31 ~~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~-~~i~~~~------------~~g-~~~g~afv~f~~~~~a~~a~~~l~g 96 (173)
....|.|-+.|.... ..+.+.|++||.|.+ ....++. ... ....+-.|.|.+..+|.+|+.. ||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 345677778887654 566679999999876 2222110 001 1356889999999999999955 99
Q ss_pred ceeCCeEEEEEEee
Q psy2141 97 FDLGGQYLRVGRAI 110 (173)
Q Consensus 97 ~~i~g~~l~v~~a~ 110 (173)
..++|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877776653
No 219
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.10 E-value=0.00078 Score=44.89 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=11.4
Q ss_pred CCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCCCCCCHHH
Q psy2141 2 QHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEED 48 (173)
Q Consensus 2 l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~ 48 (173)
|+||+|+|.+........ ..........++|||+|||+++|++.
T Consensus 70 ~~g~~i~V~~a~~~~~~~---~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 70 LNDRKVFVGRFKSRKERE---AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ETTEECEEEESSCCCC-------------------------------
T ss_pred ECCEEEEEEECCCccccc---cccccccCCCCceEeCCCCCCccccc
Confidence 689999998765432211 12222334567899999999998864
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.10 E-value=0.0044 Score=43.25 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=28.5
Q ss_pred EEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCc
Q psy2141 61 YCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLF 97 (173)
Q Consensus 61 ~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~ 97 (173)
.+++.++. ++++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 45666664 368999999999999999999887753
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.43 E-value=0.004 Score=43.20 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=36.9
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEEEEeeC
Q psy2141 70 PHRHKGYGFIEYETKQASNEAISSM-NLFDLGGQYLRVGRAIT 111 (173)
Q Consensus 70 ~g~~~g~afv~f~~~~~a~~a~~~l-~g~~i~g~~l~v~~a~~ 111 (173)
....+|+++++|.+.++|++|++.| ||..++| .+.++++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3567999999999999999999999 9999999 999988754
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.96 E-value=1.2 Score=37.11 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCC
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNL 96 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g 96 (173)
...++|+ .|..+...+|.++|+.||. ..++.+-+ ..+||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3467776 8889999999999999994 45555444 3799999999999999998853
No 223
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=86.19 E-value=0.14 Score=32.51 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=23.7
Q ss_pred CCCCcccccCCCCCCCCCcchhhhhhhhhCCCCeEEEcCCC
Q psy2141 1 MQHFPHVQVGRPSNMPQAQSVIDEITEEAKLYNRIYVASIH 41 (173)
Q Consensus 1 ~l~gr~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp 41 (173)
.++|+.|+|.++...+.....- ..........+||||||+
T Consensus 61 ~~~g~~l~V~~a~~~~~~~~~~-~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 61 VICGSRVRVELSTGMPRRSRFD-RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSSCCCEEEESSSCCCSSCCC-SCCCSCCCCSCCCSCCCC
T ss_pred eECCcEEEEEEccCCCCcccCC-CCCccccCCCceecCCCC
Confidence 3789999998776543222111 111111337789999997
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.54 E-value=9.8 Score=22.54 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=38.2
Q ss_pred CCHHHHHHHhhccC-----ceeEEEEccCCCCCCcceEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEee
Q psy2141 44 LTEEDIKSVFEAFG-----PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAI 110 (173)
Q Consensus 44 ~~e~~L~~~F~~~G-----~v~~~~i~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 110 (173)
+...+|..++..-+ .|-.+.+.. .|.||+... +.+..+++.|++..+.|+.+++..++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 55567777776544 445566632 388999876 56788999999999999999887653
No 225
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=39.36 E-value=5.7 Score=27.39 Aligned_cols=28 Identities=21% Similarity=0.515 Sum_probs=17.4
Q ss_pred HHHHHHhhccCceeEEEEccCCCCCCcceEEEEEEc
Q psy2141 47 EDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYE 82 (173)
Q Consensus 47 ~~L~~~F~~~G~v~~~~i~~~~~~g~~~g~afv~f~ 82 (173)
+++.++|...|.|+.... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 455567777777776542 3789999975
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=36.17 E-value=85 Score=22.10 Aligned_cols=38 Identities=13% Similarity=0.379 Sum_probs=27.1
Q ss_pred CCHHHHHHHh--hccCceeEEEEccCCCCCCcceEEEEEEcCH
Q psy2141 44 LTEEDIKSVF--EAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84 (173)
Q Consensus 44 ~~e~~L~~~F--~~~G~v~~~~i~~~~~~g~~~g~afv~f~~~ 84 (173)
.+..+|++.| +.|.+++ ++.++++ .-+.|++.|.|.+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 4457899977 8997755 5556653 34789999999653
No 227
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=27.07 E-value=57 Score=24.48 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=24.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceeEEEE
Q psy2141 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL 64 (173)
Q Consensus 32 ~~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i 64 (173)
..-+.|+|||+.++...|..++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 346789999999999999999977 55544433
No 228
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=24.94 E-value=1.3e+02 Score=20.86 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=27.4
Q ss_pred CCHHHHHHHhhccCcee---EEEEccCCCCCCcceEEEEE
Q psy2141 44 LTEEDIKSVFEAFGPIK---YCKLQQGSSPHRHKGYGFIE 80 (173)
Q Consensus 44 ~~e~~L~~~F~~~G~v~---~~~i~~~~~~g~~~g~afv~ 80 (173)
.++++|+++-.+.|.+. ++.+..+..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58899999999999773 45555553488888877754
No 229
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=23.54 E-value=36 Score=25.70 Aligned_cols=32 Identities=0% Similarity=-0.058 Sum_probs=24.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceeEEEE
Q psy2141 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL 64 (173)
Q Consensus 33 ~~l~V~nLp~~~~e~~L~~~F~~~G~v~~~~i 64 (173)
....|+|||+.++...|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 45789999999999999999875444444443
No 230
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.23 E-value=75 Score=24.97 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q psy2141 34 RIYVASIHPDLTEEDIKSVFEA 55 (173)
Q Consensus 34 ~l~V~nLp~~~~e~~L~~~F~~ 55 (173)
...|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888874
Done!