RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2141
(173 letters)
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 68.8 bits (168), Expect = 1e-16
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+YV +HPD+TE + F GPI ++ + R GY ++ ++ + A+ +M
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 95 NLFDLGGQYLRVGRA 109
N + G+ +R+ +
Sbjct: 63 NFDVIKGKPVRIMWS 77
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 68.1 bits (166), Expect = 3e-16
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+YV ++ TEE I +F G IK + G+ F+EY ++ + A+
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 93 SMNLFDLGGQYLRV 106
+N L + +R
Sbjct: 68 YINGTRLDDRIIRT 81
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 67.3 bits (164), Expect = 4e-16
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+YV ++ +T++ + ++F +G I + + R +G F+ Y ++ + EAIS+
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 94 MN--LFDLGGQYLRVGRA 109
+N + + G Q L V A
Sbjct: 68 LNNVIPEGGSQPLSVRLA 85
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 66.6 bits (162), Expect = 1e-15
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+++++ + L ++ +K + +FGP+K L + S+ KGY F EY +++AI+
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 93 SMNLFDLGGQYLRVGRA 109
+N LG + L V RA
Sbjct: 62 GLNGMQLGDKKLLVQRA 78
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 65.8 bits (160), Expect = 1e-15
Identities = 13/76 (17%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++++ + T+E ++ F FG +K C + + R +G+GF+ + + ++ + +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 60
Query: 94 MNLFDLGGQYLRVGRA 109
+ +L + + A
Sbjct: 61 QSRHELDSKTIDPKVA 76
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 66.0 bits (161), Expect = 2e-15
Identities = 20/102 (19%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 26 TEEAKLYNRIYVASIHPDLT-EEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK 84
T+ + +R+++ +++ + + D++++F +G I C + HKG+ F++Y +
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNE 60
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPST 126
+ + A++ + + GQ L + A P PS+
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKV-----NRSGPSS 97
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 65.9 bits (160), Expect = 3e-15
Identities = 15/84 (17%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQA 86
E + + ++++ + + TEE +++ +E +G + C + + + R +G+GF+ + +
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 87 SNEAISSMNLFDLGGQYLRVGRAI 110
+ A+ + + G+ + RA+
Sbjct: 75 VDAAM-AARPHSIDGRVVEPKRAV 97
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 66.2 bits (161), Expect = 3e-15
Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ +T E++ +F +GPI+ ++ +G ++ YE + A
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN---TPETRGTAYVVYEDIFDAKNACD 64
Query: 93 SMNLFDLGGQYLRVGRA 109
++ F++ +YL V
Sbjct: 65 HLSGFNVCNRYLVVLYY 81
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 65.3 bits (159), Expect = 3e-15
Identities = 21/79 (26%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL-QQGSSPHRHKGYGFIEYETKQASNEAI 91
++I V +I + +I+ +F FG +K +L ++ + H+G+GF+++ TKQ + +A
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 92 SSM-NLFDLGGQYLRVGRA 109
+++ + L G+ L + A
Sbjct: 69 NALCHSTHLYGRRLVLEWA 87
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 65.4 bits (159), Expect = 3e-15
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+YV + ++E + +F GP+ + + +H+GYGF+E+ +++ ++ AI
Sbjct: 10 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 69
Query: 93 SMNLFDLGGQYLRVGRA 109
M++ L G+ +RV +A
Sbjct: 70 IMDMIKLYGKPIRVNKA 86
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 64.6 bits (157), Expect = 6e-15
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 22 IDEITEEAKLYN-RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIE 80
+++ ++ N +Y I LT++ ++ F FG I ++ KGY F+
Sbjct: 7 FEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV------FPEKGYSFVR 60
Query: 81 YETKQASNEAISSMNLFDLGGQYLRVGRAITPPNA 115
+ T +++ AI S+N + G ++ P+
Sbjct: 61 FSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 95
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 64.0 bits (155), Expect = 7e-15
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYC-KLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
I++ ++ P++ E+ + F AFG I K+ + KGY FI + + AS+ AI +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 94 MNLFDLGGQYLRVGRAITPPN 114
MN L + + V A +
Sbjct: 61 MNGQYLCNRPITVSYAFKKDS 81
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 64.0 bits (155), Expect = 1e-14
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
R++V ++ +EED++ +F A+GP+ S + KG+ F+ + + + +A +
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
++ G+ L V + A S GP+
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKEA--SQSGPS 97
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 63.8 bits (155), Expect = 1e-14
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+ + V + TE+D+K F FG + ++++ KG+GF+ + + + +S
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
Query: 93 SMNLFDLGGQYLRVGRA 109
++ D G++
Sbjct: 69 QRHMID--GRWCDCKLP 83
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 63.1 bits (153), Expect = 2e-14
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+ V + D+T+ ++ ++F A GPI C++ + GY F+++ ++ S AI
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 94 MNLFDLGGQYLRVGRA 109
+N + + L+V A
Sbjct: 64 LNGITVRNKRLKVSYA 79
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 63.1 bits (153), Expect = 2e-14
Identities = 18/85 (21%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQA 86
+E + ++++ + + T+E ++S FE +G + C + + + R +G+GF+ Y T +
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 87 SNEAISSMNLFDLGGQYLRVGRAIT 111
+ A+++ + G+ + RA++
Sbjct: 61 VDAAMNARP-HKVDGRVVEPKRAVS 84
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 62.6 bits (152), Expect = 2e-14
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++ V+++ +++ DI+ +F FG +K + S + +E K + +A+
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLG-TADVHFERKADALKAMKQ 60
Query: 94 MNLFDLGGQYLRVGRA 109
N L G+ + +
Sbjct: 61 YNGVPLDGRPMNIQLV 76
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 62.7 bits (152), Expect = 3e-14
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIK---YCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+++ +++ TEE +K VF G IK K + + G+GF+EY+ + + +A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 92 SSMNLFDLGGQYLRVGRA 109
+ + G L V +
Sbjct: 61 KQLQGHTVDGHKLEVRIS 78
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 62.7 bits (152), Expect = 4e-14
Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 22 IDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEY 81
+D ++ E + ++ + + D++ F A G ++ ++ + R KG ++E+
Sbjct: 8 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 67
Query: 82 ETKQASNEAISSMNLFDLGGQYLRVGRAITPPNAL 116
Q+ + L G + V + N L
Sbjct: 68 CEIQSV-PLAIGLTGQRLLGVPIIVQASQAEKNRL 101
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 61.2 bits (148), Expect = 7e-14
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++++ + D T++D+K F FG + C L+ R +G+GF+ ++ ++ ++ +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-D 59
Query: 94 MNLFDLGGQYLRVGRA 109
L G+ + RA
Sbjct: 60 QKEHKLNGKVIDPKRA 75
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 61.6 bits (149), Expect = 7e-14
Identities = 15/73 (20%), Positives = 35/73 (47%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+YV+ + +T+++++ +F +G I ++ +G GFI ++ + + EAI
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
Query: 94 MNLFDLGGQYLRV 106
+N G +
Sbjct: 68 LNGQKPSGATEPI 80
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 61.3 bits (148), Expect = 8e-14
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+ V + TE D++ VF +GPI + R +G+ F+ +E + EA
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 93 SMNLFDLGGQYLRV 106
N +L G+ +RV
Sbjct: 70 RANGMELDGRRIRV 83
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 61.7 bits (149), Expect = 9e-14
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+++V + D E+ ++ VF +G I + + R +G+GF+ +E + +A+
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 93 SMNLFDLGGQYLRVGRAITPPN 114
+MN + G+ +RV +A +
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSSD 87
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 61.2 bits (148), Expect = 9e-14
Identities = 15/79 (18%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
N++Y+ ++ P +T +D++ +F ++ GY F++Y + + AI
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQV------LLKSGYAFVDYPDQNWAIRAIE 55
Query: 93 SMN-LFDLGGQYLRVGRAI 110
+++ +L G+ + V ++
Sbjct: 56 TLSGKVELHGKIMEVDYSV 74
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 60.7 bits (147), Expect = 1e-13
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+I+V + PD EE I+ F FG ++ +L + ++ +G+ FI ++ ++ + +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 94 MNLFDLGGQYLRVGRA 109
++G + A
Sbjct: 61 KY-HNVGLSKCEIKVA 75
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 60.5 bits (146), Expect = 1e-13
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+I+V + + T ED+K FE FG + L + +RH+G+GF+ +E++ +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-E 59
Query: 94 MNLFDLGGQYLRVGRA 109
++ ++ + + +A
Sbjct: 60 IHFHEINNKMVECKKA 75
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 60.8 bits (147), Expect = 2e-13
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+YV ++ D+TE I +F GP K CK+ + + Y F+E+ + + A++
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALA 66
Query: 93 SMNLFDLGGQYLRVGRAITPPN 114
+MN + G+ ++V A TP +
Sbjct: 67 AMNGRKILGKEVKVNWATTPSS 88
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 60.4 bits (146), Expect = 2e-13
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+R++V ++ PD+TEE+++ +FE +G H+ KG+GFI ET+ + A
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVF------IHKDKGFGFIRLETRTLAEIAKV 62
Query: 93 SMNLFDLGGQYLRVGRAITPPN 114
++ L G+ LRV A +
Sbjct: 63 ELDNMPLRGKQLRVRFACHSAS 84
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 60.9 bits (147), Expect = 2e-13
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYC--KLQQGSSPHRHKGYGFIEYETKQASNEAI 91
R+++ I E+I + +++G+ F+EYE+ +A+ A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 92 SSMNL--FDLGGQYLRVGRA 109
+ L G + V A
Sbjct: 63 RKLMPGRIQLWGHQIAVDWA 82
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 60.1 bits (145), Expect = 2e-13
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+ V + ++T+E+ +S+F + G I+ CKL + + GYGF+ Y + + +AI++
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 94 MNLFDLGGQYLRVGRA 109
+N L + ++V A
Sbjct: 64 LNGLRLQTKTIKVSYA 79
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 60.4 bits (146), Expect = 2e-13
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+YV + ++ ++ + + F FG I ++ +H+G+ F+E+E + + AI
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 93 SMNLFDLGGQYLRVGRA 109
+MN +L G+ +RV A
Sbjct: 66 NMNESELFGRTIRVNLA 82
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 59.7 bits (144), Expect = 3e-13
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+I+V I D E ++ FE +G I+ ++ + +G+ F+ ++ + ++ +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-I 62
Query: 94 MNLFDLGGQYLRVGRAI 110
+ G V +A+
Sbjct: 63 QKYHTVNGHNCEVRKAL 79
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 60.1 bits (145), Expect = 3e-13
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
I V ++ D E D++ +F FG I L + + + KG+ FI + ++ + AI+
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 93 SMNLFDLGGQYLRVGRAITPPN 114
++ F L V A N
Sbjct: 69 GVSGFGYDHLILNVEWAKPSTN 90
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 59.3 bits (143), Expect = 5e-13
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
++V SIH + E++I+ F +G IK L KGY +EYET + + A
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 93 SMNLFDLGGQYLRVGRAIT 111
++N ++ GQ ++V
Sbjct: 68 ALNGAEIMGQTIQVDWCFV 86
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 59.3 bits (143), Expect = 6e-13
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
I++ ++ + + + F AFG I CK+ + KGYGF+ +ET++A+ AI
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIE 66
Query: 93 SMNLFDLGGQYLRVGRAIT 111
MN L + + VGR +
Sbjct: 67 KMNGMLLNDRKVFVGRFKS 85
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 59.4 bits (143), Expect = 8e-13
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGS--------SPHRHKGYGFIEYETK 84
+ IYV ++ +T +D+ F+ G +K K + KG + YE
Sbjct: 9 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 68
Query: 85 QASNEAISSMNLFDLGGQYLRVGRAITPP 113
+ A+ + D G L+V A P
Sbjct: 69 PTAKAAVEWFDGKDFQGSKLKVSLARKKP 97
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 58.9 bits (142), Expect = 9e-13
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
RIYV ++ PD+ +DI+ VF +G I+ + + F+E+E + + +A+
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDI---DLKNRRGGPPFAFVEFEDPRDAEDAVY 71
Query: 93 SMNLFDLGGQYLRVGRA 109
+ +D G LRV
Sbjct: 72 GRDGYDYDGYRLRVEFP 88
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 58.5 bits (141), Expect = 1e-12
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 33 NRIYVASIHPDLTEEDIK-SVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ IY+ +++ + ++++K S+ F S + +G F+ ++ ++ A+
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 92 SSMNLFDLGGQYLRVGRAITPPNA 115
SM F + +R+ A T +
Sbjct: 64 RSMQGFPFYDKPMRIQYAKTDSDI 87
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 58.2 bits (140), Expect = 1e-12
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH-----RHKGYGFIEYETKQASN 88
R+YV +I +TEE + F A + G+ + K + F+E+ + +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 89 EAISSMNLFDLGGQYLRVGRA 109
+A+ + + GQ L++ R
Sbjct: 63 QAM-AFDGIIFQGQSLKIRRP 82
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 58.6 bits (141), Expect = 1e-12
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++V +I + TEE +K +F GP+ +L + KGYGF EY+ ++ + A+ +
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 94 MNLFDLGGQYLRVGRAITPPN 114
+N + G+ LRV A + N
Sbjct: 70 LNGREFSGRALRVDNAASEKN 90
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 57.8 bits (139), Expect = 2e-12
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
R++V++I + D++ +F FG I ++ + KG+GF+ +E ++ A
Sbjct: 12 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF--NERGSKGFGFVTFENSADADRARE 69
Query: 93 SMNLFDLGGQYLRVGRA 109
++ + G+ + V A
Sbjct: 70 KLHGTVVEGRKIEVNNA 86
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 59.2 bits (142), Expect = 4e-12
Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+I+V I D E ++ FE +G I+ ++ + +G+ F+ ++ + ++ +
Sbjct: 97 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 156
Query: 92 SSMNLFDLGGQYLRVGRAITPP 113
+ G V +A++
Sbjct: 157 -IQKYHTVNGHNCEVRKALSKQ 177
Score = 54.2 bits (129), Expect = 3e-10
Identities = 14/62 (22%), Positives = 36/62 (58%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
++++ + + T+E ++S FE +G + C + + + R +G+GF+ Y T + + A+++
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 94 MN 95
Sbjct: 68 RP 69
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 57.4 bits (138), Expect = 4e-12
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 32 YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ +I+V + T+ ++ FE FG I+ + + +GYGF+ + A+ A
Sbjct: 10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 92 SSMNLFDLGGQYLRVGRAITPPN 114
N + G+ V A
Sbjct: 70 KDPN-PIIDGRKANVNLAYLGAK 91
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 56.7 bits (136), Expect = 4e-12
Identities = 8/76 (10%), Positives = 30/76 (39%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+++ + P T+ +I+ + + + + + + +I+ +K+ + +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 94 MNLFDLGGQYLRVGRA 109
+N + G L +
Sbjct: 63 LNGLKIEGYTLVTKVS 78
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 57.0 bits (137), Expect = 5e-12
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 23 DEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYE 82
++ K +YV ++ +EE I+ F P ++ + + Y F+ +
Sbjct: 2 EDTMSSVK---ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFS 52
Query: 83 TKQASNEAISSMNLFDLGGQYLRVGRAITPPN 114
++ + EA+ ++N L G + V A
Sbjct: 53 NREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 84
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 56.2 bits (135), Expect = 1e-11
Identities = 18/77 (23%), Positives = 38/77 (49%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+++ + + ++D+ +F FG + K+ + K +GF+ Y+ ++ AI
Sbjct: 19 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 78
Query: 93 SMNLFDLGGQYLRVGRA 109
SMN F +G + L+V
Sbjct: 79 SMNGFQIGMKRLKVQLK 95
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 55.4 bits (133), Expect = 2e-11
Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+ ++V D+TE++++ F +G + P + + F+ + Q +
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVF-----IPKPFRAFAFVTFADDQIAQSLC- 59
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ G + + A N S+ GP+
Sbjct: 60 -GEDLIIKGISVHISNAEPKHN---SNSGPS 86
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 53.9 bits (129), Expect = 5e-11
Identities = 10/74 (13%), Positives = 31/74 (41%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
I V ++ ++ ++I F + I + + G + +E++ + A+
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 93 SMNLFDLGGQYLRV 106
+N +G + +++
Sbjct: 70 DLNDRPIGSRKVKL 83
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 52.9 bits (126), Expect = 2e-10
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGP------IKYCKLQQGSSPHRHKGYGFIEYETKQA 86
N ++V + L + ++ E FG + + ++ Y +
Sbjct: 9 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED 68
Query: 87 SNEAISSMNLFDLGGQYLRV 106
+ AI +N + G+ L+
Sbjct: 69 ALRAIQCVNNVVVDGRTLKA 88
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 52.9 bits (126), Expect = 2e-10
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y+ ++ P +TE D+ S+F F K +Q R +G FI + K+ + +A+
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 93 SMNLFDLGGQYLRVGRA 109
+N + L G+ L +
Sbjct: 79 LVNGYKLYGKILVIEFG 95
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 52.4 bits (125), Expect = 3e-10
Identities = 12/84 (14%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 26 TEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQ 85
+++ + + ++ ++TE+++K VFE I+ + KG +IE++++
Sbjct: 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ-----DGKSKGIAYIEFKSEA 64
Query: 86 ASNEAISSMNLFDLGGQYLRVGRA 109
+ + + ++ G+ + +
Sbjct: 65 DAEKNLEEKQGAEIDGRSVSLYYT 88
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 53.0 bits (126), Expect = 4e-10
Identities = 26/111 (23%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 2 QHFPHVQVGRPSNMPQAQS---VIDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGP 58
Q+ P+ Q + + Q Q ++ E + + V I + E ++ +FE +GP
Sbjct: 9 QYDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGP 68
Query: 59 IKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRA 109
I+ K+ + +GYGF+++++ ++ +AI+ +N F++ + L+V A
Sbjct: 69 IESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 51.6 bits (123), Expect = 5e-10
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
N +YV D+T ++ F FG I + F+ YE +++++A++
Sbjct: 6 NTLYVYGE--DMTPTLLRGAFSPFGNIIDLS------MDPPRNCAFVTYEKMESADQAVA 57
Query: 93 SMNLFDLGGQYLRVGRAITPP 113
+N + L+V A P
Sbjct: 58 ELNGTQVESVQLKVNIARKQP 78
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 51.6 bits (123), Expect = 8e-10
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
RI V ++ +T + + +F FG + ++ ++Y ++ A S
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT----KNNQFQALLQYADPVSAQHAKLS 64
Query: 94 MNLFDL--GGQYLRVGRA 109
++ ++ LR+ +
Sbjct: 65 LDGQNIYNACCTLRIDFS 82
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 51.6 bits (123), Expect = 8e-10
Identities = 11/95 (11%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 13 SNMPQAQSVIDEITEEAKL-YNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPH 71
N+ + + + + + + + + + EE + E +G ++ + H
Sbjct: 7 LNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDH 66
Query: 72 RHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106
G ++++ ++ + +A+ +N GQ +
Sbjct: 67 -LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 50.9 bits (121), Expect = 1e-09
Identities = 12/100 (12%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 33 NRIYVASIHPDLTEE-----DIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQAS 87
+ + + D+ E +S+F + + + I + ++
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY------FKSFKRVRINFSNPLSA 59
Query: 88 NEAISSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTS 127
+A ++ + G+ +++ A T P P S
Sbjct: 60 ADARLRLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKS 99
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.9 bits (121), Expect = 1e-09
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
++ ++ D+TEE IK F ++ S+P R KG+G+ E+E + +
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSL-LSAL 74
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSSKGPAPST 126
S+N LG + +RV A + K PS+
Sbjct: 75 SLNEESLGNKRIRVDVADQAQD-----KDSGPSS 103
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 49.8 bits (118), Expect = 1e-09
Identities = 15/71 (21%), Positives = 40/71 (56%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+Y+ + P T++D+ + + +G I K + ++ KGYGF+++++ A+ +A++++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 95 NLFDLGGQYLR 105
+ Q +
Sbjct: 61 KASGVQAQMAK 71
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 49.0 bits (116), Expect = 6e-09
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+++ ++ D EE + V + FG +KY ++ KG F ++ T++A+ + ++
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 68
Query: 93 SMNL------FDLGGQYLRVGRAITPPNA 115
+ +L L G+ L+V A+T A
Sbjct: 69 AASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 48.4 bits (115), Expect = 9e-09
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 21/102 (20%)
Query: 12 PSNMPQAQSVI-------DEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKL 64
PS M + VI + ++ + N I ED++ FG I+ L
Sbjct: 2 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEI----------REDLRVECSKFGQIRKLLL 51
Query: 65 QQGSSPHRHKGYGFIEYETKQASNEAISSMNLFDLGGQYLRV 106
G + + + ++ I +++ GG+ +
Sbjct: 52 FDR----HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 47.4 bits (112), Expect = 2e-08
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 33 NRIYVASIHPDLTEED-IKSVFEAFG-PIKYCKLQQGSSPHRHKGYGFIEYETKQASNEA 90
I + ++ +L +E+ ++ FE FG K + F+ +E K ++ A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 91 ISSMNLFDLGGQYLRVGRAITPP 113
+ MN LG + + V A P
Sbjct: 65 LQ-MNRSLLGNREISVSLADKKP 86
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 47.2 bits (111), Expect = 2e-08
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 10/96 (10%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
NR+ V+ + P + +D+K G + Y G G +E+ K+ A+
Sbjct: 1 NRVVVSGLPPSGSWQDLKDHMREAGDVCYA-------DVYRDGTGVVEFVRKEDMTYAVR 53
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
++ + + P+ S
Sbjct: 54 KLDNTKFRSHEGETAYIRVKVDG---PRSPSYGRSR 86
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 47.0 bits (111), Expect = 3e-08
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
R++V + P+ + + F+ FG I+ + + +I+YE+ A+ A +
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTID------HVKGDSFAYIQYESLDAAQAACA 71
Query: 93 SMNLFDLGGQY--LRVGRAITPPNA 115
M F LGG LRV A + P++
Sbjct: 72 KMRGFPLGGPDRRLRVDFAKSGPSS 96
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 46.3 bits (109), Expect = 6e-08
Identities = 14/97 (14%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 33 NRIYVASIHPD-LTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAI 91
+ + V++++P+ +T + + +F +G ++ K+ K ++ + A+
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-----FNKKENALVQMADGNQAQLAM 57
Query: 92 SSMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSH 128
S +N L G+ +R+ + L +
Sbjct: 58 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTK 94
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 45.9 bits (108), Expect = 7e-08
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+ I V ++ D +++ + + + R+K F+ + + AI
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCY-------VDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSSKGPA 123
+ + G+ L V P +AL S GP+
Sbjct: 59 MFHQYSFRGKDLIVQLQ--PTDALLCS-GPS 86
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 45.9 bits (108), Expect = 8e-08
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
R+ V+ + P + +D+K G + Y + G G +EY K+ A+
Sbjct: 16 FRVLVSGLPPSGSWQDLKDHMREAGDVCYA-------DVQKDGMGMVEYLRKEDMEYALR 68
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
++ P + PS
Sbjct: 69 KLDDTKFRSHEGETSYIRVYPE-----RSSGPS 96
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 44.5 bits (104), Expect = 2e-07
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+ V ++ + + F+ GPI + + S ++ + IE+ + AI+
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD--SLKKNFRFARIEFARYDGALAAITKT 60
Query: 95 NLFDLGGQYLRVGRA 109
+ +G + V
Sbjct: 61 H-KVVGQNEIIVSHL 74
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 44.4 bits (104), Expect = 3e-07
Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+Y++++ + E++++++ + FG + + S +G GF E+ + I
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQVISTR-ILRDSSGTSRGVGFARMESTEKCEAVIG 77
Query: 93 SMNLFDLGGQYLRVGRA 109
N +
Sbjct: 78 HFNGKFIKTPPGVSAPT 94
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 44.1 bits (103), Expect = 4e-07
Identities = 11/91 (12%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
++ +I +T+ D+ E + + + G ++++ + + ++ +
Sbjct: 11 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE-RL 69
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPS 125
+ L G+ V T + K P
Sbjct: 70 HRKKLNGREAFVHVV-TLEDMREIEKNPPAQ 99
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 43.2 bits (101), Expect = 6e-07
Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+++++I P ++EED+K +F + G + + + I+ + + + +A+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF----QKDRKMALIQMGSVEEAVQALI 66
Query: 93 SMNLFDLG-GQYLRVGRA 109
++ DLG +LRV +
Sbjct: 67 DLHNHDLGENHHLRVSFS 84
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 42.4 bits (99), Expect = 1e-06
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 34 RIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISS 93
+Y+ D T +DIK E G + + + + KG F+ +++ +++ + +
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-MRRTLHKAFKGSIFVVFDSIESAKKFV-E 65
Query: 94 MNLFDLGGQYLRV 106
L +
Sbjct: 66 TPGQKYKETDLLI 78
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 42.4 bits (99), Expect = 2e-06
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 11/76 (14%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+ + ++ + V E G + +K Y F Y T + S A ++
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALL------MPPNKPYSFARYRTTEESKRAYVTL 76
Query: 95 NLFDLGGQYLRVGRAI 110
N G+ +
Sbjct: 77 N-----GKEVVDDLGQ 87
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 42.0 bits (98), Expect = 2e-06
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+++ + TE DI + F P++ +E+ T + + A++
Sbjct: 18 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTG--EADVEFATHEDAVAAMA-K 74
Query: 95 NLFDLGGQYLRVGRAITPPNALHSSKGPAPST 126
+ ++ +Y+ + T + G PS+
Sbjct: 75 DKANMQHRYVELFLNSTAG-----TSGSGPSS 101
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 41.9 bits (97), Expect = 3e-06
Identities = 6/77 (7%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+++ +++P+ + ++K + + ++ +G++++E+ + +A+
Sbjct: 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT-GTNRKFGYVDFESAEDLEKAL- 71
Query: 93 SMNLFDLGGQYLRVGRA 109
+ + G +++ +
Sbjct: 72 ELTGLKVFGNEIKLEKP 88
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 40.8 bits (95), Expect = 6e-06
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 9/83 (10%)
Query: 35 IYVASIHPD-LTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS- 92
+++ + + E FG I FIE T + + A+
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHL------ILNKINEAFIEMATTEDAQAAVDY 64
Query: 93 -SMNLFDLGGQYLRVGRAITPPN 114
+ + G+ +RV +
Sbjct: 65 YTTTPALVFGKPVRVHLSQKYKR 87
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 40.3 bits (94), Expect = 7e-06
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 9/77 (11%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
+ V + F +G I + I Y++K + +A+ S
Sbjct: 7 VTVFGFPQASASYILL-QFAQYGNILKHV------MSNTGNWMHIRYQSKLQARKAL-SK 58
Query: 95 NLFDLGGQY-LRVGRAI 110
+ G + V I
Sbjct: 59 DGRIFGESIMIGVKPCI 75
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 40.6 bits (94), Expect = 1e-05
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 27 EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETK-Q 85
EE + + ED+ +F G IK+ R G I ++ K +
Sbjct: 6 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF------VRGAKEGIILFKEKAK 59
Query: 86 ASNEAISSMNLFDLGGQYLRVGR 108
+ N +L + V
Sbjct: 60 EALGKAKDANNGNLQLRNKEVTW 82
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.6 bits (92), Expect = 2e-05
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 30 KLYNRIYVASIHPDL----TEEDIKSVFEAFGPIKYCKL--QQGSSPHRHKGYGFIEYET 83
L N + + D ED++ +G +K ++ G F+E+ +
Sbjct: 8 CLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTS 67
Query: 84 KQASNEAISSMNLFDLGGQYLRV 106
+A+ + + +
Sbjct: 68 VFDCQKAMQGLTGRKFANRVVVT 90
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 39.0 bits (90), Expect = 3e-05
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
++V + + E D+ E FG I Y + K +E+E ++ E ++
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMM------MPFKRQALVEFENIDSAKECVT 69
Query: 93 SMNL--FDLGGQYLRVGRA 109
+ GQ +
Sbjct: 70 FAADVPVYIAGQQAFFNYS 88
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 38.8 bits (89), Expect = 4e-05
Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 8/108 (7%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
I ++ +I+ F FG + +E+ + +A
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVL------LPEGGITAIVEFLEPLEARKAFR 64
Query: 93 SMNLFDLGGQYLRVGRAITPPNALHSSKGPAPSTSHMPTAAAVAAAAA 140
+ L + A P ++ S P A + ++
Sbjct: 65 HLAYSKFHHVPLYLEWA--PIGVFGAAPQKKDSQHEQPAEKAESGPSS 110
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 38.0 bits (87), Expect = 4e-05
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 35 IYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAISSM 94
I + + D+T +++ + + ++KG F+ + + AI++
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFV-------DKYKGTAFVTLLNGEQAEAAINTF 53
Query: 95 NLFDLGGQYLRVGRAITPPNAL 116
+ L + L V P +AL
Sbjct: 54 HQSRLRERELSVQLQ--PTDAL 73
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 36.0 bits (82), Expect = 3e-04
Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+++ + ++TE ++ ++ FG + + K F+E T++A+ ++
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPFGKVTNIL------MLKGKNQAFLELATEEAAITMVN 62
Query: 93 SMNL--FDLGGQYLRV 106
+ L Q + +
Sbjct: 63 YYSAVTPHLRNQPIYI 78
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.0 bits (82), Expect = 4e-04
Identities = 9/77 (11%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 33 NRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGFIEYETKQASNEAIS 92
+ + + ++E+I F + R G F+++ +++ + +A+
Sbjct: 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL- 74
Query: 93 SMNLFDLGGQYLRVGRA 109
+ +G +Y+ + ++
Sbjct: 75 KKHKERIGHRYIEIFKS 91
>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex
aeolicus [TaxId: 63363]}
Length = 106
Score = 29.0 bits (65), Expect = 0.11
Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 18/80 (22%)
Query: 30 KLYNRIYVASIHPDLTEEDIKSVFEAF--------------GPIKYCKLQQGSSPHRHKG 75
+ Y ++ + P L+EE++K FE +L +
Sbjct: 6 RYYETVFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNAR 63
Query: 76 YGFIEYETKQASNEAISSMN 95
Y ++++T + + + ++
Sbjct: 64 YFLVQFKT--ENPQLPNELD 81
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 28.4 bits (62), Expect = 0.49
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 30 KLYNRIYVASIHPDLTEEDIKSVFEAF 56
RI + PD+TE D V A
Sbjct: 345 WNSERICSLPLFPDMTESDFDRVITAL 371
>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis
protein C {Helicobacter pylori [TaxId: 210]}
Length = 371
Score = 28.2 bits (61), Expect = 0.60
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 30 KLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCK 63
Y+ H +L E ++++ + +K +
Sbjct: 338 DFYHAEISLPCHANLNLESVQNIAHSV--LKTFE 369
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
{Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 27.3 bits (59), Expect = 0.99
Identities = 1/27 (3%), Positives = 10/27 (37%)
Query: 30 KLYNRIYVASIHPDLTEEDIKSVFEAF 56
+ + ++++D+ + +
Sbjct: 343 LFFQKGICLPSGTAMSKDDVYEISKLI 369
>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima
[TaxId: 2336]}
Length = 107
Score = 25.9 bits (57), Expect = 1.5
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 34 RIY--VASIHPDLTEEDIKSVFEAF 56
RIY + I P++ EE+ +++ E
Sbjct: 3 RIYESMFIIAPNVPEEERENLVERV 27
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 26.8 bits (58), Expect = 1.5
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 22 IDEITEEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKYCKLQQGSSPHRHKGYGF 78
+DE+ EEA R V +PD +++ + A G I++ ++ K F
Sbjct: 309 VDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT----EPKKQIDF 361
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima
[TaxId: 2336]}
Length = 66
Score = 24.7 bits (54), Expect = 1.9
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 74 KGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
KGYGFI + + + + G + L+ G+ +
Sbjct: 12 KGYGFITKDEG--GDVFVHWSAIEMEGFKTLKEGQVVE 47
>d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus
[TaxId: 274]}
Length = 97
Score = 25.1 bits (55), Expect = 2.2
Identities = 7/80 (8%), Positives = 23/80 (28%), Gaps = 19/80 (23%)
Query: 30 KLYNRIYVASIHPDLTEEDIKSVFEAF--------------GPIKYCKLQQGSSPHRHKG 75
+ Y V ++P+L + + E + +L +
Sbjct: 2 RRYEVNIV--LNPNLDQSQLALEKEIIQRAAENYGARVEKVEELGLRRLAYPIAKDPQGY 59
Query: 76 YGFIEYETKQASNEAISSMN 95
+ + + E + ++ +
Sbjct: 60 FLWYQVE---MPEDRVNDLA 76
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein
1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 24.7 bits (54), Expect = 3.3
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 10 GRPSNMPQAQSVIDEITEEAK---LYNRI 35
G + A+ I I +EA L +R+
Sbjct: 46 GDRRKVSIAEEAIYLIEQEAHTEGLTDRV 74
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus
caldolyticus [TaxId: 1394]}
Length = 66
Score = 23.6 bits (51), Expect = 4.7
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 74 KGYGFIEYETKQASNEAISSMNLFDLGGQYLRVGRAIT 111
KGYGFIE E + + G + L G+ ++
Sbjct: 13 KGYGFIEVEGGSDV--FVHFTAIQGEGFKTLEEGQEVS 48
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 25.0 bits (54), Expect = 5.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 12 PSNMPQAQSVIDEITEEAKLYNRIYVASIHPDLTEEDIK 50
PS Q +D + L +RI + P TEED++
Sbjct: 1 PSARDILQQGLDRLGSPEDLASRIDSTLLSPRATEEDVR 39
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta
{Acidaminococcus fermentans [TaxId: 905]}
Length = 260
Score = 24.6 bits (53), Expect = 7.9
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 33 NRIYVASIHPDLTEEDIKS 51
R+Y+A+ +P + ED+
Sbjct: 203 KRMYLAAYYPTSSPEDVLE 221
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1207
Score = 24.5 bits (52), Expect = 9.0
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 3 HFPHVQVGRPSNMPQAQSVIDEIT-EEAKLYNRIYVASIHPDLTEEDIKSVFEAFGPIKY 61
F + V +P + ++ V + +EA+L N Y + + D+ + +++ +KY
Sbjct: 74 SFGKIYVTKPM-VNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKY 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.375
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,865
Number of extensions: 26267
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 107
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.7 bits)