Query psy2142
Match_columns 168
No_of_seqs 151 out of 1057
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 17:06:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01793 Fubi Fubi ubiquitin-li 99.9 6.3E-23 1.4E-27 143.0 7.8 71 50-120 1-74 (74)
2 KOG0009|consensus 99.8 9.1E-22 2E-26 133.4 2.8 51 118-168 10-61 (62)
3 cd01802 AN1_N ubiquitin-like d 99.8 1.8E-20 3.9E-25 139.8 9.1 77 44-120 22-103 (103)
4 PTZ00044 ubiquitin; Provisiona 99.8 5.3E-20 1.2E-24 127.7 7.7 71 50-120 1-76 (76)
5 cd01807 GDX_N ubiquitin-like d 99.8 3.4E-19 7.4E-24 124.0 7.2 68 50-117 1-73 (74)
6 cd01810 ISG15_repeat2 ISG15 ub 99.8 3.8E-19 8.3E-24 123.9 7.2 69 52-120 1-74 (74)
7 cd01803 Ubiquitin Ubiquitin. U 99.8 7.2E-19 1.6E-23 121.0 7.7 71 50-120 1-76 (76)
8 KOG0004|consensus 99.8 2.3E-19 5E-24 142.7 3.8 102 50-160 1-113 (156)
9 cd01806 Nedd8 Nebb8-like ubiq 99.8 3.7E-18 8E-23 117.5 8.3 71 50-120 1-76 (76)
10 cd01797 NIRF_N amino-terminal 99.7 3.3E-18 7.2E-23 121.5 7.0 68 50-117 1-75 (78)
11 cd01804 midnolin_N Ubiquitin-l 99.7 8.9E-18 1.9E-22 118.8 7.6 72 49-121 1-77 (78)
12 cd01798 parkin_N amino-termina 99.7 1.9E-17 4E-22 113.9 6.2 65 52-116 1-70 (70)
13 KOG0003|consensus 99.7 2.3E-18 4.9E-23 130.6 0.8 74 50-123 1-79 (128)
14 cd01794 DC_UbP_C dendritic cel 99.7 4E-17 8.6E-22 113.8 6.4 63 53-115 2-69 (70)
15 PF04758 Ribosomal_S30: Riboso 99.7 7.7E-19 1.7E-23 119.5 -2.2 51 118-168 8-59 (59)
16 cd01805 RAD23_N Ubiquitin-like 99.7 8.3E-17 1.8E-21 111.7 7.9 67 50-116 1-74 (77)
17 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 6.2E-17 1.3E-21 113.9 7.3 66 49-114 1-71 (73)
18 cd01808 hPLIC_N Ubiquitin-like 99.7 9.4E-17 2E-21 110.9 7.0 67 50-116 1-71 (71)
19 cd01809 Scythe_N Ubiquitin-lik 99.7 1.6E-16 3.5E-21 108.2 7.1 67 50-116 1-72 (72)
20 cd01792 ISG15_repeat1 ISG15 ub 99.6 4.6E-16 1E-20 110.1 6.7 68 50-117 3-77 (80)
21 cd01800 SF3a120_C Ubiquitin-li 99.6 5.9E-16 1.3E-20 108.6 6.6 64 59-122 9-75 (76)
22 cd01790 Herp_N Homocysteine-re 99.6 1.3E-15 2.8E-20 109.5 6.9 66 50-115 2-78 (79)
23 cd01763 Sumo Small ubiquitin-r 99.6 5.5E-15 1.2E-19 106.5 9.0 74 47-120 9-87 (87)
24 cd01796 DDI1_N DNA damage indu 99.6 1.9E-15 4.2E-20 104.9 5.9 62 52-113 1-69 (71)
25 PTZ00467 40S ribosomal protein 99.6 2.8E-16 6.1E-21 108.9 0.9 50 118-167 10-60 (66)
26 PF00240 ubiquitin: Ubiquitin 99.6 6.6E-15 1.4E-19 100.0 6.2 63 55-117 1-68 (69)
27 cd01812 BAG1_N Ubiquitin-like 99.5 1.5E-14 3.2E-19 98.6 6.6 66 50-115 1-70 (71)
28 KOG0005|consensus 99.5 1.2E-14 2.6E-19 100.1 3.6 65 50-114 1-70 (70)
29 smart00213 UBQ Ubiquitin homol 99.5 7.5E-14 1.6E-18 92.1 6.6 58 50-107 1-59 (64)
30 cd01813 UBP_N UBP ubiquitin pr 99.4 2.3E-13 4.9E-18 95.8 6.6 65 50-114 1-72 (74)
31 cd01814 NTGP5 Ubiquitin-like N 99.4 1.9E-13 4.1E-18 104.1 5.3 74 47-120 2-94 (113)
32 TIGR00601 rad23 UV excision re 99.4 4.7E-13 1E-17 119.7 8.4 72 50-121 1-77 (378)
33 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 5.8E-13 1.2E-17 95.0 4.6 50 66-115 19-74 (75)
34 cd01799 Hoil1_N Ubiquitin-like 99.3 3.5E-12 7.5E-17 90.2 5.7 57 58-115 13-74 (75)
35 KOG0010|consensus 99.3 5.4E-12 1.2E-16 115.4 6.0 71 47-117 13-87 (493)
36 cd01769 UBL Ubiquitin-like dom 99.2 9.7E-11 2.1E-15 78.0 6.7 61 54-114 2-67 (69)
37 KOG0011|consensus 99.2 4.6E-11 1E-15 105.0 6.4 69 50-118 1-73 (340)
38 PRK09336 30S ribosomal protein 99.2 3.3E-12 7.1E-17 84.5 -0.8 39 118-157 9-48 (50)
39 PF11976 Rad60-SLD: Ubiquitin- 99.1 5.6E-10 1.2E-14 76.5 7.2 66 50-115 1-72 (72)
40 cd01795 USP48_C USP ubiquitin- 99.0 3.4E-10 7.3E-15 85.1 5.6 58 59-116 16-77 (107)
41 KOG0001|consensus 99.0 1.8E-09 4E-14 70.7 8.0 68 52-119 2-74 (75)
42 cd01789 Alp11_N Ubiquitin-like 98.8 2.5E-08 5.5E-13 71.5 6.7 65 50-114 2-79 (84)
43 PF13881 Rad60-SLD_2: Ubiquiti 98.6 4.6E-07 9.9E-12 68.8 8.5 69 51-119 4-91 (111)
44 PLN02560 enoyl-CoA reductase 98.5 3E-07 6.5E-12 80.5 8.1 71 50-120 1-85 (308)
45 cd01788 ElonginB Ubiquitin-lik 98.5 3E-07 6.5E-12 70.6 6.8 72 50-121 3-85 (119)
46 KOG4248|consensus 98.5 1.3E-07 2.9E-12 92.9 5.2 68 52-119 5-76 (1143)
47 PF14560 Ubiquitin_2: Ubiquiti 98.4 9.3E-07 2E-11 63.2 6.4 65 50-114 2-81 (87)
48 cd00196 UBQ Ubiquitin-like pro 98.2 4.6E-06 9.9E-11 51.1 5.9 56 59-114 9-67 (69)
49 KOG0006|consensus 98.2 1.9E-06 4.1E-11 76.5 5.5 65 50-114 1-73 (446)
50 cd01801 Tsc13_N Ubiquitin-like 98.2 4.2E-06 9E-11 58.7 5.5 49 65-113 20-74 (77)
51 PF11543 UN_NPL4: Nuclear pore 98.0 1.1E-05 2.4E-10 57.8 4.4 66 48-113 3-77 (80)
52 PF13019 Telomere_Sde2: Telome 97.9 4.2E-05 9.2E-10 61.8 7.4 74 50-123 1-91 (162)
53 KOG4495|consensus 97.6 0.0001 2.2E-09 55.4 4.3 58 50-107 3-63 (110)
54 PF10302 DUF2407: DUF2407 ubiq 97.5 0.00028 6E-09 52.4 5.9 56 52-107 3-65 (97)
55 KOG1769|consensus 97.5 0.001 2.2E-08 49.9 8.3 75 48-122 19-98 (99)
56 cd01811 OASL_repeat1 2'-5' oli 97.2 0.0017 3.7E-08 46.7 6.8 62 50-112 1-70 (80)
57 KOG1872|consensus 96.7 0.0031 6.7E-08 58.3 5.5 65 51-115 5-74 (473)
58 KOG3493|consensus 96.0 0.0018 3.8E-08 45.6 0.1 49 59-107 13-61 (73)
59 PRK08364 sulfur carrier protei 95.7 0.072 1.6E-06 36.7 7.2 66 49-120 4-70 (70)
60 PF00789 UBX: UBX domain; Int 95.7 0.049 1.1E-06 37.9 6.4 61 47-107 4-71 (82)
61 PF11470 TUG-UBL1: GLUT4 regul 95.5 0.037 8E-07 38.4 4.9 54 59-112 8-64 (65)
62 PF12754 Blt1: Cell-cycle cont 95.4 0.004 8.6E-08 55.0 0.0 97 24-123 56-184 (309)
63 PRK06437 hypothetical protein; 94.9 0.15 3.3E-06 35.0 6.6 63 52-120 5-67 (67)
64 PLN02799 Molybdopterin synthas 94.9 0.078 1.7E-06 37.1 5.3 70 49-120 1-82 (82)
65 smart00166 UBX Domain present 94.8 0.18 3.9E-06 35.2 7.1 60 48-107 3-69 (80)
66 cd01770 p47_UBX p47-like ubiqu 94.8 0.24 5.2E-06 35.1 7.6 60 48-107 3-68 (79)
67 PF15044 CLU_N: Mitochondrial 94.3 0.057 1.2E-06 38.2 3.5 51 64-114 1-56 (76)
68 KOG4583|consensus 94.2 0.026 5.6E-07 50.8 1.9 61 47-107 7-73 (391)
69 KOG1639|consensus 93.9 0.12 2.7E-06 45.0 5.4 72 50-121 1-82 (297)
70 COG5227 SMT3 Ubiquitin-like pr 93.8 0.16 3.5E-06 38.0 5.1 73 50-122 25-102 (103)
71 cd01767 UBX UBX (ubiquitin reg 93.7 0.55 1.2E-05 32.4 7.5 57 50-107 3-66 (77)
72 cd06406 PB1_P67 A PB1 domain i 93.4 0.34 7.4E-06 35.1 6.1 45 50-96 5-49 (80)
73 PF08817 YukD: WXG100 protein 93.1 0.21 4.5E-06 35.0 4.5 63 51-113 4-78 (79)
74 KOG0013|consensus 92.9 0.14 3E-06 43.5 4.0 48 60-107 159-206 (231)
75 PF14453 ThiS-like: ThiS-like 92.6 0.37 8E-06 32.8 5.0 49 50-107 1-49 (57)
76 PRK05659 sulfur carrier protei 92.3 1 2.2E-05 30.1 7.0 62 50-120 1-66 (66)
77 cd01772 SAKS1_UBX SAKS1-like U 92.3 1 2.2E-05 31.7 7.2 58 49-107 4-68 (79)
78 cd00754 MoaD Ubiquitin domain 91.7 0.48 1E-05 32.3 4.9 59 60-120 18-80 (80)
79 cd01774 Faf1_like2_UBX Faf1 ik 91.2 2.3 4.9E-05 30.6 8.1 59 48-107 3-73 (85)
80 cd00565 ThiS ThiaminS ubiquiti 90.9 0.8 1.7E-05 30.7 5.3 57 58-120 5-65 (65)
81 cd01760 RBD Ubiquitin-like dom 90.9 0.9 1.9E-05 32.0 5.7 59 54-112 4-68 (72)
82 PRK06944 sulfur carrier protei 89.6 2.3 4.9E-05 28.2 6.6 61 50-120 1-65 (65)
83 PRK06488 sulfur carrier protei 88.9 2.4 5.3E-05 28.3 6.4 61 50-120 1-65 (65)
84 PRK07440 hypothetical protein; 88.6 4 8.7E-05 28.1 7.5 64 48-120 3-70 (70)
85 PRK08053 sulfur carrier protei 88.4 3.8 8.2E-05 27.6 7.2 64 50-120 1-66 (66)
86 TIGR01682 moaD molybdopterin c 87.8 1.9 4E-05 29.9 5.5 59 60-120 18-80 (80)
87 PRK05863 sulfur carrier protei 87.0 3.6 7.7E-05 27.8 6.3 62 50-120 1-65 (65)
88 cd01773 Faf1_like1_UBX Faf1 ik 86.8 5.4 0.00012 28.8 7.5 58 49-107 5-69 (82)
89 smart00455 RBD Raf-like Ras-bi 86.7 3.2 6.9E-05 28.8 6.1 51 56-106 6-60 (70)
90 TIGR01683 thiS thiamine biosyn 85.6 3.9 8.5E-05 27.3 5.9 59 58-120 4-64 (64)
91 cd06409 PB1_MUG70 The MUG70 pr 85.3 2.5 5.4E-05 30.9 5.2 41 52-92 3-48 (86)
92 cd01771 Faf1_UBX Faf1 UBX doma 84.9 8.8 0.00019 27.2 7.8 59 48-107 3-68 (80)
93 cd01817 RGS12_RBD Ubiquitin do 84.5 4.2 9.1E-05 29.0 5.8 55 60-114 12-68 (73)
94 KOG4250|consensus 81.5 2.8 6.2E-05 41.1 5.3 47 59-106 326-372 (732)
95 PF02597 ThiS: ThiS family; I 81.3 3.3 7.1E-05 27.8 4.2 59 60-120 14-77 (77)
96 PF02196 RBD: Raf-like Ras-bin 81.2 14 0.0003 25.5 7.4 56 56-111 7-66 (71)
97 KOG3206|consensus 80.1 4.1 8.9E-05 34.7 5.2 64 51-114 3-79 (234)
98 TIGR01687 moaD_arch MoaD famil 78.7 9.3 0.0002 26.6 6.0 58 60-120 18-88 (88)
99 COG2104 ThiS Sulfur transfer p 77.0 17 0.00037 25.2 6.8 65 49-120 2-68 (68)
100 PRK06083 sulfur carrier protei 76.1 12 0.00026 26.9 6.0 65 48-120 17-84 (84)
101 cd06411 PB1_p51 The PB1 domain 75.0 5.2 0.00011 28.9 3.8 36 59-94 8-43 (78)
102 PRK07696 sulfur carrier protei 74.3 17 0.00038 24.6 6.2 64 50-120 1-67 (67)
103 smart00666 PB1 PB1 domain. Pho 73.2 17 0.00037 24.7 6.0 37 58-94 11-47 (81)
104 PRK11840 bifunctional sulfur c 72.2 16 0.00035 32.8 7.0 64 50-122 1-68 (326)
105 PF11620 GABP-alpha: GA-bindin 71.8 9.7 0.00021 28.1 4.6 58 60-117 5-65 (88)
106 PF00564 PB1: PB1 domain; Int 70.4 24 0.00052 23.9 6.3 44 51-94 3-48 (84)
107 cd06407 PB1_NLP A PB1 domain i 70.0 19 0.00041 25.7 5.8 37 58-94 10-47 (82)
108 PF09379 FERM_N: FERM N-termin 69.8 31 0.00067 23.2 7.2 54 54-107 1-63 (80)
109 PRK11130 moaD molybdopterin sy 69.7 20 0.00044 24.9 5.8 58 61-120 18-81 (81)
110 PTZ00380 microtubule-associate 69.4 7.5 0.00016 30.2 3.8 45 62-106 45-89 (121)
111 cd05992 PB1 The PB1 domain is 68.1 24 0.00053 23.7 5.9 43 52-94 3-47 (81)
112 PF11069 DUF2870: Protein of u 67.6 5.9 0.00013 29.8 2.8 35 89-123 3-41 (98)
113 cd01787 GRB7_RA RA (RAS-associ 64.2 26 0.00057 25.6 5.6 57 50-106 5-68 (85)
114 cd01768 RA RA (Ras-associating 61.1 34 0.00075 23.5 5.7 43 60-102 15-65 (87)
115 KOG2086|consensus 60.0 21 0.00045 32.8 5.4 59 49-107 305-369 (380)
116 cd01611 GABARAP Ubiquitin doma 59.0 21 0.00045 27.0 4.5 60 47-106 22-90 (112)
117 KOG3439|consensus 58.5 52 0.0011 25.4 6.5 68 48-115 29-107 (116)
118 PF00788 RA: Ras association ( 57.9 35 0.00075 23.2 5.2 42 50-91 5-52 (93)
119 smart00295 B41 Band 4.1 homolo 57.8 30 0.00065 26.9 5.4 58 50-107 4-70 (207)
120 smart00144 PI3K_rbd PI3-kinase 57.6 75 0.0016 23.5 7.6 60 58-117 29-105 (108)
121 PF02991 Atg8: Autophagy prote 56.5 32 0.00068 25.8 5.1 47 60-106 35-82 (104)
122 cd06397 PB1_UP1 Uncharacterize 53.9 40 0.00086 24.6 5.0 44 51-94 2-46 (82)
123 cd06410 PB1_UP2 Uncharacterize 52.8 49 0.0011 24.4 5.5 42 51-93 16-57 (97)
124 PF02017 CIDE-N: CIDE-N domain 51.9 25 0.00055 25.2 3.7 63 52-115 5-70 (78)
125 PF14836 Ubiquitin_3: Ubiquiti 51.5 77 0.0017 23.3 6.3 47 60-107 16-68 (88)
126 PF03852 Vsr: DNA mismatch end 48.7 4.2 9E-05 29.2 -0.7 14 8-21 57-70 (75)
127 smart00314 RA Ras association 46.7 79 0.0017 21.9 5.7 42 50-91 5-51 (90)
128 KOG0007|consensus 45.4 6.9 0.00015 34.7 -0.0 38 66-103 302-339 (341)
129 PF02505 MCR_D: Methyl-coenzym 44.4 1.2E+02 0.0025 24.6 6.8 84 19-107 37-121 (153)
130 smart00266 CAD Domains present 43.8 41 0.00088 24.0 3.7 47 69-115 20-68 (74)
131 KOG0012|consensus 43.1 34 0.00074 31.3 4.0 55 58-112 13-69 (380)
132 cd01612 APG12_C Ubiquitin-like 42.5 67 0.0014 23.1 4.8 47 60-106 18-66 (87)
133 PRK04171 ribosome biogenesis p 41.9 47 0.001 28.3 4.4 45 47-91 79-130 (222)
134 PF14533 USP7_C2: Ubiquitin-sp 39.7 29 0.00063 28.6 2.8 47 60-106 135-193 (213)
135 cd06398 PB1_Joka2 The PB1 doma 39.2 1.2E+02 0.0025 22.1 5.6 29 66-94 23-52 (91)
136 COG5417 Uncharacterized small 38.9 1E+02 0.0022 22.4 5.1 49 59-107 18-71 (81)
137 cd01816 Raf_RBD Ubiquitin doma 38.0 1.5E+02 0.0032 21.2 5.9 35 58-93 10-44 (74)
138 cd01818 TIAM1_RBD Ubiquitin do 37.1 1.1E+02 0.0024 22.1 5.1 46 54-99 4-51 (77)
139 cd01615 CIDE_N CIDE_N domain, 36.7 60 0.0013 23.3 3.7 62 53-115 6-70 (78)
140 cd02413 40S_S3_KH K homology R 35.9 1.6E+02 0.0034 20.8 6.4 53 38-91 18-73 (81)
141 COG4919 Ribosomal protein S30 35.8 3 6.5E-05 27.8 -2.9 37 119-156 10-47 (54)
142 cd06539 CIDE_N_A CIDE_N domain 35.6 70 0.0015 23.1 3.9 63 52-115 5-70 (78)
143 PF08825 E2_bind: E2 binding d 33.4 56 0.0012 23.5 3.1 37 62-98 1-37 (84)
144 cd06536 CIDE_N_ICAD CIDE_N dom 32.7 71 0.0015 23.1 3.6 63 52-115 5-72 (80)
145 PF00276 Ribosomal_L23: Riboso 31.4 96 0.0021 22.3 4.1 40 58-97 21-61 (91)
146 TIGR00632 vsr DNA mismatch end 31.2 15 0.00032 28.3 -0.2 13 8-20 57-69 (117)
147 cd06538 CIDE_N_FSP27 CIDE_N do 30.8 87 0.0019 22.6 3.7 47 69-115 22-69 (79)
148 PF02192 PI3K_p85B: PI3-kinase 30.7 58 0.0013 23.2 2.8 21 60-80 2-22 (78)
149 PRK05738 rplW 50S ribosomal pr 29.4 80 0.0017 22.9 3.4 39 58-96 21-60 (92)
150 cd06408 PB1_NoxR The PB1 domai 28.9 2.3E+02 0.005 20.6 6.4 45 50-95 3-48 (86)
151 COG5100 NPL4 Nuclear pore prot 28.6 1.7E+02 0.0037 27.7 6.1 66 50-115 1-78 (571)
152 KOG3224|consensus 27.7 66 0.0014 28.2 3.1 35 85-121 162-197 (278)
153 KOG0084|consensus 27.6 1.2E+02 0.0026 25.7 4.6 83 13-95 21-123 (205)
154 cd06396 PB1_NBR1 The PB1 domai 27.3 1.2E+02 0.0026 21.9 4.0 36 59-100 11-48 (81)
155 TIGR00824 EIIA-man PTS system, 26.6 1.2E+02 0.0027 22.4 4.1 37 60-96 31-72 (116)
156 TIGR03260 met_CoM_red_D methyl 25.9 3.2E+02 0.007 22.0 6.5 83 20-107 37-119 (150)
157 cd06537 CIDE_N_B CIDE_N domain 25.7 1.2E+02 0.0026 22.0 3.7 63 52-115 5-69 (81)
158 PF11816 DUF3337: Domain of un 25.2 1.9E+02 0.0041 25.4 5.7 56 61-116 251-327 (331)
159 PRK01777 hypothetical protein; 25.0 2.8E+02 0.006 20.3 5.8 52 60-117 19-77 (95)
160 PF12436 USP7_ICP0_bdg: ICP0-b 24.6 1.9E+02 0.0041 24.4 5.4 43 49-91 176-223 (249)
161 PF14451 Ub-Mut7C: Mut7-C ubiq 24.1 1.5E+02 0.0032 21.1 4.0 41 59-103 24-65 (81)
162 PF03587 EMG1: EMG1/NEP1 methy 23.7 93 0.002 25.9 3.3 40 47-86 59-105 (202)
163 PF00794 PI3K_rbd: PI3-kinase 23.6 2.9E+02 0.0062 19.9 7.1 69 47-115 14-101 (106)
164 PF14533 USP7_C2: Ubiquitin-sp 23.4 1.5E+02 0.0033 24.4 4.5 48 60-107 36-91 (213)
165 smart00143 PI3K_p85B PI3-kinas 22.5 93 0.002 22.3 2.6 21 60-80 2-22 (78)
166 KOG0086|consensus 22.0 1.3E+02 0.0028 25.0 3.7 94 7-100 15-129 (214)
167 TIGR03636 L23_arch archaeal ri 21.5 1.8E+02 0.004 20.5 4.0 33 58-90 15-47 (77)
168 PF14847 Ras_bdg_2: Ras-bindin 21.4 2.3E+02 0.0049 21.2 4.7 33 53-85 4-38 (105)
169 cd01776 Rin1_RA Ubiquitin doma 21.1 1.6E+02 0.0034 21.8 3.6 33 59-91 15-48 (87)
No 1
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.88 E-value=6.3e-23 Score=143.05 Aligned_cols=71 Identities=37% Similarity=0.520 Sum_probs=69.3
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
||||||+.++++++|++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+ ++|||++++++||
T Consensus 1 mqi~vk~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 8999999888999999999999999999999999999999999999999999999999 7999999999998
No 2
>KOG0009|consensus
Probab=99.84 E-value=9.1e-22 Score=133.44 Aligned_cols=51 Identities=69% Similarity=0.957 Sum_probs=48.1
Q ss_pred cCCccc-cchhHHHhhhhhhccchhhhhceecceeeEeeecCCccCCCCCCC
Q psy2142 118 LGGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168 (168)
Q Consensus 118 lGGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~~~~~~~~~ 168 (168)
..|||. |||||+||||+|+|+|||++|+|||+||+||+.+||+|++||+++
T Consensus 10 rAGKVr~QTPKv~kqeK~kkk~GRa~~Rlqy~rR~vn~~~~~g~Kr~~N~~s 61 (62)
T KOG0009|consen 10 RAGKVRGQTPKVEKQEKKKKKRGRAKKRLQYNRRFVNVVFGVGGKRGPNPNS 61 (62)
T ss_pred hcccccccCCcchhhhhcccccchHHHHhhhheeeEEeeeccccccCCCCCC
Confidence 457777 999999999999999999999999999999999999999999986
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=1.8e-20 Score=139.82 Aligned_cols=77 Identities=19% Similarity=0.366 Sum_probs=72.5
Q ss_pred EeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142 44 TMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL 118 (168)
Q Consensus 44 ~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll 118 (168)
+.....|||+||+.++ ++++|++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+ ++|||++++++
T Consensus 22 ~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~ 101 (103)
T cd01802 22 LPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMR 101 (103)
T ss_pred eccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecC
Confidence 3457789999999876 889999999999999999999999999999999999999999999999 89999999999
Q ss_pred CC
Q psy2142 119 GG 120 (168)
Q Consensus 119 GG 120 (168)
||
T Consensus 102 GG 103 (103)
T cd01802 102 GG 103 (103)
T ss_pred CC
Confidence 98
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.81 E-value=5.3e-20 Score=127.73 Aligned_cols=71 Identities=27% Similarity=0.514 Sum_probs=68.4
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
||||||+.+| +++++++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ ++++|++++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999875 889999999999999999999999999999999999999999999999 8999999999997
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.78 E-value=3.4e-19 Score=124.00 Aligned_cols=68 Identities=28% Similarity=0.351 Sum_probs=64.6
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
|+|+||+.+| ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ ++++++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999865 789999999999999999999999999999999999999999999999 8999999874
No 6
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.78 E-value=3.8e-19 Score=123.92 Aligned_cols=69 Identities=28% Similarity=0.475 Sum_probs=65.9
Q ss_pred EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
||||++.+ ++++|++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+ ++|++++++++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999865 789999999999999999999999999999999999999999999999 7999999999997
No 7
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.78 E-value=7.2e-19 Score=121.03 Aligned_cols=71 Identities=27% Similarity=0.488 Sum_probs=68.2
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
|+|+||+.++ +.++|++++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++++++++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999875 789999999999999999999999999999999999999999999998 7999999999998
No 8
>KOG0004|consensus
Probab=99.76 E-value=2.3e-19 Score=142.67 Aligned_cols=102 Identities=25% Similarity=0.378 Sum_probs=87.5
Q ss_pred eEEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc-
Q psy2142 50 KRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL- 123 (168)
Q Consensus 50 MQIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~- 123 (168)
|+|||+... +.+++|++++||..+|++|++.+|||+++|+|||+|++|+|..+|+||+ .+||+|+++++||...
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~kkr 80 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKR 80 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcccc
Confidence 899999986 5888999999999999999999999999999999999999999999999 7999999999999532
Q ss_pred -----cchhHHHhhhhhhccchhhhhceecceeeEeeecCCc
Q psy2142 124 -----KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGR 160 (168)
Q Consensus 124 -----~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~ 160 (168)
++||.-++..+|. ......|+.|+. +|+
T Consensus 81 kkk~~~~pk~~~~~~kk~--------~l~~~~y~kvd~-ngk 113 (156)
T KOG0004|consen 81 KKKSYTTPKKIKSKHKKV--------SLAVLKYYKVDE-NGK 113 (156)
T ss_pred cccccccccccCCCcccc--------ccCCccceeecc-Ccc
Confidence 7777766644443 367777888875 464
No 9
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.76 E-value=3.7e-18 Score=117.46 Aligned_cols=71 Identities=24% Similarity=0.422 Sum_probs=67.9
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
|+|+||+.++ +.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+ +++||++++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 8999999865 778999999999999999999999999999999999999999999998 8999999999997
No 10
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.75 E-value=3.3e-18 Score=121.49 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=63.5
Q ss_pred eEEEEEcCCc---eEEE-EcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 50 KRIIVRGQSN---YVLE-CQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 50 MQIfVR~~~~---~tle-V~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
||||||+.+| ++++ +++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+ +++|++++++
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 8999999976 3674 89999999999999999999999999999999999999999999 8999999876
No 11
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.73 E-value=8.9e-18 Score=118.79 Aligned_cols=72 Identities=19% Similarity=0.328 Sum_probs=67.8
Q ss_pred ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
.|+|+||+..+ ++++|+++.||++||++|++..|+|+++|+|+|+|++|+|+ +|++|| +++|+++..+.||-
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 49999999865 88999999999999999999999999999999999999999 999999 79999999999984
No 12
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.71 E-value=1.9e-17 Score=113.95 Aligned_cols=65 Identities=20% Similarity=0.380 Sum_probs=60.9
Q ss_pred EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142 52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
||||+..+ ++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ ++|+|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 68999865 789999999999999999999999999999999999999999999998 899999864
No 13
>KOG0003|consensus
Probab=99.70 E-value=2.3e-18 Score=130.63 Aligned_cols=74 Identities=24% Similarity=0.456 Sum_probs=69.2
Q ss_pred eEEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc
Q psy2142 50 KRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL 123 (168)
Q Consensus 50 MQIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~ 123 (168)
||+|++++. +.+++|+|++||..||++|...+|||+++|+|+|+|++|+|..||++|+ .+|||++.+++||...
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~i~ 79 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE 79 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCCCC
Confidence 688888874 4889999999999999999999999999999999999999999999999 8999999999999644
No 14
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.69 E-value=4e-17 Score=113.77 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=58.5
Q ss_pred EEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 53 IVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 53 fVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
.||..+| ++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ ++|+||++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 4677654 889999999999999999999999999999999999999999999998 79999876
No 15
>PF04758 Ribosomal_S30: Ribosomal protein S30; InterPro: IPR006846 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry is for the ribosomal protein S30.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_X 2XZM_X 3IZB_Z 3U5G_e 3U5C_e 3J16_E 3IZ6_Z.
Probab=99.69 E-value=7.7e-19 Score=119.55 Aligned_cols=51 Identities=73% Similarity=1.068 Sum_probs=44.7
Q ss_pred cCCccc-cchhHHHhhhhhhccchhhhhceecceeeEeeecCCccCCCCCCC
Q psy2142 118 LGGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168 (168)
Q Consensus 118 lGGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~~~~~~~~~ 168 (168)
..|+|. |||||+|+||+|.++|||++|++||+||+++++++|+|++||++|
T Consensus 8 rAGKVR~QTPKV~k~~k~k~~~gRak~R~~Y~rRfv~~~~~~g~k~~~N~~s 59 (59)
T PF04758_consen 8 RAGKVRGQTPKVEKQEKKKKPTGRAKKRIQYNRRFVNVVPTFGKKKGPNANS 59 (59)
T ss_dssp TTTHHHHHSSSSS--HHHHHHHCHHHHHHHHHHHCSTTHHHSCTTTTTTS--
T ss_pred hcccccccCCCcCccccccCCchhHHHHHhhhhheeeecccCCCccCCCCCC
Confidence 457888 999999999999999999999999999999999999999999986
No 16
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.69 E-value=8.3e-17 Score=111.72 Aligned_cols=67 Identities=25% Similarity=0.433 Sum_probs=62.7
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCC--CCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKV--ALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGI--p~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
|+|+||+.++ ++++|++++||++||++|++.+|+ |+++|+|+|+|++|+|+.+|++|+ +++|+++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 8999999865 889999999999999999999999 999999999999999999999998 788887764
No 17
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.69 E-value=6.2e-17 Score=113.93 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=61.7
Q ss_pred ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
+|+|+|++..| +.++|+|++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+ ++|+||-
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 59999999854 888999999999999999999999999999999999999999999998 7898874
No 18
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.68 E-value=9.4e-17 Score=110.86 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=62.6
Q ss_pred eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142 50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
|+|+||+.++ +++++++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++||++++
T Consensus 1 ~~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 5799999865 789999999999999999999999999999999999999999999999 789999874
No 19
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.67 E-value=1.6e-16 Score=108.20 Aligned_cols=67 Identities=27% Similarity=0.369 Sum_probs=62.8
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
|+|+||++++ +++++++++||++||++|++..|+|++.|+|+|+|++|+|+.+|++|+ +++++++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 8999999964 889999999999999999999999999999999999999999999999 789988764
No 20
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.64 E-value=4.6e-16 Score=110.08 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=63.6
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEE--EEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSL--ICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~L--iy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
|+|+||..+| +++++++++||++||++|++.+|+|+++|+| +|+|++|+|+.+|++|+ +++|+++++-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 8999999865 7789999999999999999999999999999 99999999999999998 7899998863
No 21
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.63 E-value=5.9e-16 Score=108.59 Aligned_cols=64 Identities=20% Similarity=0.182 Sum_probs=60.9
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL 122 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv 122 (168)
.++++|++++||++||++|++..|||+++|+|+|+|+.|+|+.+|++|+ +++|+++++++||+.
T Consensus 9 ~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~~ 75 (76)
T cd01800 9 MLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGRK 75 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCcC
Confidence 4889999999999999999999999999999999999999999999998 899999999999863
No 22
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.61 E-value=1.3e-15 Score=109.45 Aligned_cols=66 Identities=24% Similarity=0.364 Sum_probs=57.8
Q ss_pred eEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCChhhhc-----CCccceEE
Q psy2142 50 KRIIVRGQSN----YVLECQQNETVSHLKNKVASLEK--VALEDFSLICSGKTLTDDLSISDLE-----SGSIEIFV 115 (168)
Q Consensus 50 MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~eG--Ip~~~Q~Liy~GK~LeD~~tL~dy~-----~sTL~Lvv 115 (168)
|.|+||++++ +++++++++||++||++|++..+ .|+++|+|||+||+|+|+.||++|. +.|+|||.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 6899999864 56677999999999999998764 5589999999999999999999994 78999875
No 23
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.60 E-value=5.5e-15 Score=106.47 Aligned_cols=74 Identities=16% Similarity=0.374 Sum_probs=70.2
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
+..|+|+|+++++ +.++|.+++++..||+++++..|||+++|+|+|+|+.|+|+.|+++|+ +++|+++++++||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4569999999976 779999999999999999999999999999999999999999999998 8999999999998
No 24
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.59 E-value=1.9e-15 Score=104.94 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=55.5
Q ss_pred EEEEcC-Cc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CChhhhc---CCccce
Q psy2142 52 IIVRGQ-SN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD-LSISDLE---SGSIEI 113 (168)
Q Consensus 52 IfVR~~-~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~-~tL~dy~---~sTL~L 113 (168)
|+||+. ++ ++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+ .+|++|+ +++|+|
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 467877 44 88999999999999999999999999999999999999998 6899998 667665
No 25
>PTZ00467 40S ribosomal protein S30; Provisional
Probab=99.58 E-value=2.8e-16 Score=108.86 Aligned_cols=50 Identities=38% Similarity=0.527 Sum_probs=44.6
Q ss_pred cCCccc-cchhHHHhhhhhhccchhhhhceecceeeEeeecCCccCCCCCC
Q psy2142 118 LGGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNAN 167 (168)
Q Consensus 118 lGGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~~~~~~~~ 167 (168)
..|+|. |||||+|+||+|.++|||++|+|||+||+||+.++|+|+..|++
T Consensus 10 rAGKVr~QTPkv~k~eKkk~~~gRA~~R~qYnrRfv~~~~~~g~kr~~~~~ 60 (66)
T PTZ00467 10 RAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEKVHMNKQ 60 (66)
T ss_pred hcccccCCCCCchhhhcccCCCchHHHHHHHHhhhhhccccCCcccccCCC
Confidence 467777 99999999999999999999999999999999998876665554
No 26
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.56 E-value=6.6e-15 Score=100.00 Aligned_cols=63 Identities=32% Similarity=0.496 Sum_probs=57.4
Q ss_pred EcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 55 RGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 55 R~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
|+.++ ++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+ +++|+++++.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 34544 889999999999999999999999999999999999999999999999 7889888764
No 27
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.54 E-value=1.5e-14 Score=98.61 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=60.2
Q ss_pred eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
|+|+||..+. +++++++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+++.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 5899999743 789999999999999999999999999999999999999999999998 77887653
No 28
>KOG0005|consensus
Probab=99.50 E-value=1.2e-14 Score=100.12 Aligned_cols=65 Identities=18% Similarity=0.345 Sum_probs=60.4
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
|.|.|+++.+ ..++++|+++|..+|+.|++.+||||.+|+|+|+|+.+.|+.|-++|+ +|.||++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6788999865 789999999999999999999999999999999999999999999998 7888874
No 29
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.49 E-value=7.5e-14 Score=92.09 Aligned_cols=58 Identities=34% Similarity=0.526 Sum_probs=55.8
Q ss_pred eEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142 50 KRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE 107 (168)
Q Consensus 50 MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~ 107 (168)
|+|+||+.+ .+.++|++++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~ 59 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYN 59 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcC
Confidence 899999997 5889999999999999999999999999999999999999999999998
No 30
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.45 E-value=2.3e-13 Score=95.76 Aligned_cols=65 Identities=29% Similarity=0.388 Sum_probs=57.8
Q ss_pred eEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE---cCeecCCCCChhhhc---CCccceE
Q psy2142 50 KRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLIC---SGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 50 MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy---~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
|.|.||-.+ .++++|++++||++||++|++..|+|+++|+|+| .|++|+|+.+|++|+ ++.+.|+
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 567888765 4999999999999999999999999999999996 999999999999998 5666554
No 31
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.42 E-value=1.9e-13 Score=104.12 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCceEEEEEcCCc---eEEEEcCCCCHHHHHHHHh-----hhcCCC--CCCeEEEEcCeecCCCCChhhhc---------
Q psy2142 47 ENMKRIIVRGQSN---YVLECQQNETVSHLKNKVA-----SLEKVA--LEDFSLICSGKTLTDDLSISDLE--------- 107 (168)
Q Consensus 47 ~~~MQIfVR~~~~---~tleV~~s~TV~~LK~kI~-----~~eGIp--~~~Q~Liy~GK~LeD~~tL~dy~--------- 107 (168)
+..+.|.+|..+| -...+.+++||++||++|+ ..+|+| +++|+|||+||+|+|+.||++|+
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 3567788888876 3468889999999999999 556676 99999999999999999999998
Q ss_pred CCccceEEEecCC
Q psy2142 108 SGSIEIFVPLLGG 120 (168)
Q Consensus 108 ~sTL~LvvrllGG 120 (168)
..|+||+++...-
T Consensus 82 ~~TmHvvlr~~~~ 94 (113)
T cd01814 82 VITMHVVVQPPLA 94 (113)
T ss_pred ceEEEEEecCCCC
Confidence 4799999987553
No 32
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=4.7e-13 Score=119.67 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=63.6
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcC---CCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCCc
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEK---VALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGK 121 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eG---Ip~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGGK 121 (168)
|+|+||+.++ ++|+|++++||.+||++|++..| +|+++|+|||+|++|+|+.+|++|+....++++.|++++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 8999999865 88999999999999999999998 999999999999999999999999955555555555543
No 33
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.37 E-value=5.8e-13 Score=94.96 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHhhh--cCCC-CCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 66 QNETVSHLKNKVASL--EKVA-LEDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 66 ~s~TV~~LK~kI~~~--eGIp-~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
.++||.+||++|++. +|++ +++|+|||+|++|+|+.||++|+ +++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 467999999999999 5675 99999999999999999999999 89999875
No 34
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.31 E-value=3.5e-12 Score=90.18 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=51.0
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCChhhhc----CCccceEE
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT-DDLSISDLE----SGSIEIFV 115 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le-D~~tL~dy~----~sTL~Lvv 115 (168)
.+++++|++++||++||++|++.+|||+++|+| |+|+.|. |+.+|++|+ +++++|-+
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 348899999999999999999999999999999 9999995 669999998 57877653
No 35
>KOG0010|consensus
Probab=99.27 E-value=5.4e-12 Score=115.44 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=66.4
Q ss_pred CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
...+.|.||+.+. +.+.|..+.||.+||+.|+...++|+++|+|||+||+|+|++||.+|+ +.|+|||+..
T Consensus 13 ~~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 13 ASLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred cceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 3568999999865 899999999999999999999999999999999999999999999999 8999999854
No 36
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.17 E-value=9.7e-11 Score=77.99 Aligned_cols=61 Identities=34% Similarity=0.529 Sum_probs=53.5
Q ss_pred EEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142 54 VRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 54 VR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
||..++ +.+++++++||.+||++|++..|+|++.|+|+|+|++|+|+.+|++|+ +++|++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 455533 678999999999999999999999999999999999999999999998 5666654
No 37
>KOG0011|consensus
Probab=99.16 E-value=4.6e-11 Score=105.00 Aligned_cols=69 Identities=23% Similarity=0.416 Sum_probs=61.3
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCChhhhcCCccceEEEec
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEK--VALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLL 118 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eG--Ip~~~Q~Liy~GK~LeD~~tL~dy~~sTL~Lvvrll 118 (168)
|+|+||++++ |++++.|++||.++|.+|+...| .|+++|+|||+|++|.|+.++++|+-..-.++|-|+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMl 73 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVML 73 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEE
Confidence 8999999864 99999999999999999999999 999999999999999999999999954444444443
No 38
>PRK09336 30S ribosomal protein S30e; Provisional
Probab=99.16 E-value=3.3e-12 Score=84.47 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=33.9
Q ss_pred cCCccc-cchhHHHhhhhhhccchhhhhceecceeeEeeec
Q psy2142 118 LGGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQT 157 (168)
Q Consensus 118 lGGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~ 157 (168)
.+|+|. |||||+++||||+ .|||++|+|||+||+|+.+.
T Consensus 9 rAGKVr~qTPkv~k~ekkk~-~gra~~R~qynrRf~~~~~~ 48 (50)
T PRK09336 9 KAGKVRSQTPKIPPKPKKNE-VPRVRNRREYERRVLKARQQ 48 (50)
T ss_pred hcccccCCCCCcchhhhccC-CchhHHHHHHHHHHhhhhcc
Confidence 568888 9999999998555 69999999999999999853
No 39
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.07 E-value=5.6e-10 Score=76.48 Aligned_cols=66 Identities=27% Similarity=0.376 Sum_probs=60.0
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCC-CCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVAL-EDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~-~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
|+|+|++.++ +.+.|.+++++..|++.+++..|+|+ ++++|+|.|+.|.++.|+++++ +++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 7899999976 77899999999999999999999999 9999999999999999999999 77888764
No 40
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.05 E-value=3.4e-10 Score=85.08 Aligned_cols=58 Identities=26% Similarity=0.233 Sum_probs=52.9
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCC-CCChhhhc---CCccceEEE
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTD-DLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD-~~tL~dy~---~sTL~Lvvr 116 (168)
-.+++|++++||.+||.+|...+++||++|+|+|.|+.|.| ..||++|| +|.|.|.+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 36899999999999999999999999999999999999965 48899999 788888774
No 41
>KOG0001|consensus
Probab=99.02 E-value=1.8e-09 Score=70.75 Aligned_cols=68 Identities=25% Similarity=0.466 Sum_probs=60.8
Q ss_pred EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142 52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG 119 (168)
Q Consensus 52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG 119 (168)
+++++..+ ..+++.+.++|..+|.+|+..+|+|+.+|+|.+.|++|+|+.+|.+|+ .++++++.++.+
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 56666544 779999999999999999999999999999999999999999999998 788998887653
No 42
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.76 E-value=2.5e-08 Score=71.52 Aligned_cols=65 Identities=15% Similarity=0.294 Sum_probs=53.2
Q ss_pred eEEEEEcC-CceE--EEEcCCCCHHHHHHHHhhhcCCCCCCeEE-EEcCe-----ec-CCCCChhhhc---CCccceE
Q psy2142 50 KRIIVRGQ-SNYV--LECQQNETVSHLKNKVASLEKVALEDFSL-ICSGK-----TL-TDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 50 MQIfVR~~-~~~t--leV~~s~TV~~LK~kI~~~eGIp~~~Q~L-iy~GK-----~L-eD~~tL~dy~---~sTL~Lv 114 (168)
+.|+|... +.+. ..++++.||++||++|+...|+||+.|+| +|.|+ .| +|+.+|++|+ +.+||++
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 34566654 2334 45999999999999999999999999999 58999 56 6778899999 7889876
No 43
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.55 E-value=4.6e-07 Score=68.79 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=50.9
Q ss_pred EEEEEcCCc---eEEEEcCCCCHHHHHHHHhhhc-------CCCCCCeEEEEcCeecCCCCChhhhc----C-----Ccc
Q psy2142 51 RIIVRGQSN---YVLECQQNETVSHLKNKVASLE-------KVALEDFSLICSGKTLTDDLSISDLE----S-----GSI 111 (168)
Q Consensus 51 QIfVR~~~~---~tleV~~s~TV~~LK~kI~~~e-------GIp~~~Q~Liy~GK~LeD~~tL~dy~----~-----sTL 111 (168)
.|.++..+| .++..++++||++||+.|.... -..+++++|||.||.|+|+.||++|. . .++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 444454444 6789999999999999998642 12567899999999999999999995 2 378
Q ss_pred ceEEEecC
Q psy2142 112 EIFVPLLG 119 (168)
Q Consensus 112 ~LvvrllG 119 (168)
||+++...
T Consensus 84 Hlvvrp~~ 91 (111)
T PF13881_consen 84 HLVVRPNA 91 (111)
T ss_dssp EEEE-SSS
T ss_pred EEEecCCC
Confidence 88887654
No 44
>PLN02560 enoyl-CoA reductase
Probab=98.53 E-value=3e-07 Score=80.48 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=57.6
Q ss_pred eEEEEEcCCc--e---EEEEcCCCCHHHHHHHHhhhcCC-CCCCeEEEEc---C----eecCCCCChhhhc-CCccceEE
Q psy2142 50 KRIIVRGQSN--Y---VLECQQNETVSHLKNKVASLEKV-ALEDFSLICS---G----KTLTDDLSISDLE-SGSIEIFV 115 (168)
Q Consensus 50 MQIfVR~~~~--~---tleV~~s~TV~~LK~kI~~~eGI-p~~~Q~Liy~---G----K~LeD~~tL~dy~-~sTL~Lvv 115 (168)
|+|.|+..++ . +|+++++.||++||++|++..++ ++++|+|++. | +.|+|+.+|++|| .+.-.+.+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 7889987644 3 68999999999999999999886 8999999983 4 4889999999998 33334556
Q ss_pred EecCC
Q psy2142 116 PLLGG 120 (168)
Q Consensus 116 rllGG 120 (168)
.-+|-
T Consensus 81 kDLGp 85 (308)
T PLN02560 81 KDLGP 85 (308)
T ss_pred EeCCC
Confidence 66774
No 45
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.52 E-value=3e-07 Score=70.57 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=58.2
Q ss_pred eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc----------CCccceEEEec
Q psy2142 50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE----------SGSIEIFVPLL 118 (168)
Q Consensus 50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----------~sTL~Lvvrll 118 (168)
|-|.||-..+ +-+++.+++||.+||.+|+.....||++|+|+-.+..|+|+.||+||| ..++-|.++.-
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~ 82 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSS 82 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecC
Confidence 4455555554 678999999999999999999999999999998889999999999998 24566666654
Q ss_pred CCc
Q psy2142 119 GGK 121 (168)
Q Consensus 119 GGK 121 (168)
.|.
T Consensus 83 d~~ 85 (119)
T cd01788 83 DDT 85 (119)
T ss_pred CCC
Confidence 454
No 46
>KOG4248|consensus
Probab=98.49 E-value=1.3e-07 Score=92.90 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=62.9
Q ss_pred EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc--CCccceEEEecC
Q psy2142 52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE--SGSIEIFVPLLG 119 (168)
Q Consensus 52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~--~sTL~LvvrllG 119 (168)
|.||+++. +++.+...+||.++|++|.+..+|+.+.|+|||+|++|.|+.++.+|+ +.+|||+=|...
T Consensus 5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~vdgk~~hlverppp 76 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNVDGKVIHLVERPPP 76 (1143)
T ss_pred eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccCCCeEEEeeccCCC
Confidence 88999974 889999999999999999999999999999999999999999999999 889999966544
No 47
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.40 E-value=9.3e-07 Score=63.18 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=51.2
Q ss_pred eEEEEEcCC----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc----C---eec-CCCCChhhhc---CCccceE
Q psy2142 50 KRIIVRGQS----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICS----G---KTL-TDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 50 MQIfVR~~~----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~----G---K~L-eD~~tL~dy~---~sTL~Lv 114 (168)
..|+|.... .....++++.||++||++|+...|+|++.|+|.+. + ..| +|+.+|+.|+ +.+|+++
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 467777653 26689999999999999999999999999999987 1 223 5678999999 6667654
No 48
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.23 E-value=4.6e-06 Score=51.06 Aligned_cols=56 Identities=27% Similarity=0.362 Sum_probs=48.9
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
..++.+.++.|+.+|+++|.+..|++++.|.|+++|..+++...+.+++ ++++++.
T Consensus 9 ~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 9 TVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 4778888999999999999999999999999999999999998886776 5566554
No 49
>KOG0006|consensus
Probab=98.22 E-value=1.9e-06 Score=76.52 Aligned_cols=65 Identities=20% Similarity=0.379 Sum_probs=56.3
Q ss_pred eEEEEEcCC-----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142 50 KRIIVRGQS-----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 50 MQIfVR~~~-----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
|-++|+... +++|+|+.+.+|.+||+-++.+.|+|+++.++||+||.|.|+.|+++|+ .+.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 566776542 4889999999999999999999999999999999999999999999887 4556655
No 50
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.18 E-value=4.2e-06 Score=58.70 Aligned_cols=49 Identities=27% Similarity=0.396 Sum_probs=42.0
Q ss_pred cCCCCHHHHHHHHhhhcC-CCCCCeEEE--EcCeecCCCCChhhhc---CCccce
Q psy2142 65 QQNETVSHLKNKVASLEK-VALEDFSLI--CSGKTLTDDLSISDLE---SGSIEI 113 (168)
Q Consensus 65 ~~s~TV~~LK~kI~~~eG-Ip~~~Q~Li--y~GK~LeD~~tL~dy~---~sTL~L 113 (168)
+++.||.+||..|++..+ +++++|+|. +.|++|.|+.+|++|| +++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 578899999999998865 689999995 8999999999999998 556554
No 51
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.97 E-value=1.1e-05 Score=57.81 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=41.1
Q ss_pred CceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC---eec--CCCCChhhhc---CCccce
Q psy2142 48 NMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG---KTL--TDDLSISDLE---SGSIEI 113 (168)
Q Consensus 48 ~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G---K~L--eD~~tL~dy~---~sTL~L 113 (168)
..|-|-||+.+| +-|++++++|+.+|+++|++..++|++.|.|+.+- ..| .++.+|+++| |+.|+|
T Consensus 3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 568899999998 78999999999999999999999999999886432 234 4567888888 566554
No 52
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.92 E-value=4.2e-05 Score=61.82 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=58.4
Q ss_pred eEEEEEcCCc------eEEEEcCCCCHHHHHHHHhhhcCCCCCC-eEEEEc-Ceec--CCCCChhhhc-------CCccc
Q psy2142 50 KRIIVRGQSN------YVLECQQNETVSHLKNKVASLEKVALED-FSLICS-GKTL--TDDLSISDLE-------SGSIE 112 (168)
Q Consensus 50 MQIfVR~~~~------~tleV~~s~TV~~LK~kI~~~eGIp~~~-Q~Liy~-GK~L--eD~~tL~dy~-------~sTL~ 112 (168)
|+|||+++++ +.+.+.++.||.+|+.+|.+..++|+.. +.|++. ++.| .++..++++. ..+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999865 5578899999999999999999999888 456663 5565 5666677764 23688
Q ss_pred eEEEecCCccc
Q psy2142 113 IFVPLLGGKLL 123 (168)
Q Consensus 113 LvvrllGGKv~ 123 (168)
|.++++|||.=
T Consensus 81 l~~rl~GGKGG 91 (162)
T PF13019_consen 81 LSLRLRGGKGG 91 (162)
T ss_pred EEEeccCCCcc
Confidence 99999999843
No 53
>KOG4495|consensus
Probab=97.57 E-value=0.0001 Score=55.39 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=48.8
Q ss_pred eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE-cC-eecCCCCChhhhc
Q psy2142 50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLIC-SG-KTLTDDLSISDLE 107 (168)
Q Consensus 50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy-~G-K~LeD~~tL~dy~ 107 (168)
|-|-||-..+ +-++++++.||-+||.+++....-|+++|+|+- .- ..|+|..||++||
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~g 63 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCG 63 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcc
Confidence 4455665554 668999999999999999988888999999997 33 6789999999998
No 54
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.51 E-value=0.00028 Score=52.43 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=44.3
Q ss_pred EEEEcCCc---eEEEEc--CCCCHHHHHHHHhhhc--CCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142 52 IIVRGQSN---YVLECQ--QNETVSHLKNKVASLE--KVALEDFSLICSGKTLTDDLSISDLE 107 (168)
Q Consensus 52 IfVR~~~~---~tleV~--~s~TV~~LK~kI~~~e--GIp~~~Q~Liy~GK~LeD~~tL~dy~ 107 (168)
|.||.-++ .+|++. .+.||..||+.|.+.- ...-..++|||+|+.|.|+..|+.--
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 55665543 567777 8899999999999886 35566899999999999998877643
No 55
>KOG1769|consensus
Probab=97.45 E-value=0.001 Score=49.92 Aligned_cols=75 Identities=17% Similarity=0.339 Sum_probs=66.9
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL 122 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv 122 (168)
.-++|.|+++++ ..+.|.-+....-|+..-+++.|++....+++|.|+.+.+.+|-++++ +..|+++....||..
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~~ 98 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGFG 98 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCCC
Confidence 346777788765 467999999999999999999999999999999999999999999998 889999999999863
No 56
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.20 E-value=0.0017 Score=46.73 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=50.5
Q ss_pred eEEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC-----eecCCCCChhhhc-CCccc
Q psy2142 50 KRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSG-----KTLTDDLSISDLE-SGSIE 112 (168)
Q Consensus 50 MQIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G-----K~LeD~~tL~dy~-~sTL~ 112 (168)
+|+.|+--+ ..++.|+|.++|..||++|....|++- +|+|.|.- ..|.+..+|++|| -+.++
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~ 70 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTN 70 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccE
Confidence 477787654 388999999999999999999999877 99999953 3568889999999 44433
No 57
>KOG1872|consensus
Probab=96.67 E-value=0.0031 Score=58.32 Aligned_cols=65 Identities=25% Similarity=0.342 Sum_probs=54.3
Q ss_pred EEEEEcCCc-eEEE-EcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 51 RIIVRGQSN-YVLE-CQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 51 QIfVR~~~~-~tle-V~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
.|.||-... +.++ ++.++|+..+|++|....|+||+.|++.+.|..|.|+-.++... +.|+.++.
T Consensus 5 ~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 5 TVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred eEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 467776654 7776 99999999999999999999999999999999999986666665 67776653
No 58
>KOG3493|consensus
Probab=96.03 E-value=0.0018 Score=45.61 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=44.9
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE 107 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~ 107 (168)
..-+.+.+++||+++|..|+.+.|-.++...|---+.+++|.-+|++|.
T Consensus 13 KVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dye 61 (73)
T KOG3493|consen 13 KVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYE 61 (73)
T ss_pred eEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEE
Confidence 3678899999999999999999999999988887788899999999997
No 59
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.73 E-value=0.072 Score=36.72 Aligned_cols=66 Identities=23% Similarity=0.300 Sum_probs=49.2
Q ss_pred ceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 49 MKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 49 ~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
+|.|.+.+... ..+++++..||.+|-+++ +++++.-.+..+|.++.++..|.+ ++.+.++...-||
T Consensus 4 mm~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~~~~l~~--gD~Veii~~V~GG 70 (70)
T PRK08364 4 MIRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALEDDPVKD--GDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCCCcCcCC--CCEEEEEccccCC
Confidence 47888876633 678888999999998765 677777888899999976555544 6677776665555
No 60
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.72 E-value=0.049 Score=37.86 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=48.7
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCC-eEEE--EcCeecCCC--CChhhhc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALED-FSLI--CSGKTLTDD--LSISDLE 107 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~-Q~Li--y~GK~LeD~--~tL~dy~ 107 (168)
.....|-||.++| ..-...+++||.+|.+-|......+... ..|+ |--+.|.++ .||++.+
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~ 71 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAG 71 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCT
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhc
Confidence 3457899999987 5568899999999999999887666654 6776 677888765 4899987
No 61
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.47 E-value=0.037 Score=38.36 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=39.3
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccc
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIE 112 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~ 112 (168)
.+.+.|.|+.++.+|-++.....|+++++-.|.|++++|+-..++.-.| ++.|.
T Consensus 8 r~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 8 RFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEe
Confidence 4789999999999999999999999999999999999998777766665 55544
No 62
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=95.44 E-value=0.004 Score=55.00 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred ceeeeccCCccccccceeEEEeeCCceEEEEEcCCc----eEEEEc-C--CCCHHHHHHHHhh----------hcCCCCC
Q psy2142 24 TSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSN----YVLECQ-Q--NETVSHLKNKVAS----------LEKVALE 86 (168)
Q Consensus 24 ~~~~~~~~~sf~~~~~~~~~~~~~~~MQIfVR~~~~----~tleV~-~--s~TV~~LK~kI~~----------~eGIp~~ 86 (168)
+.+|-.+.|.+... ...+-.+..+.|.+|...+ ++|... | +.||.+||..+++ .+++|.+
T Consensus 56 ~~~~~~~~s~~~~~---~~aPgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~d 132 (309)
T PF12754_consen 56 QRRSTHSASAFAKQ---TPAPGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLD 132 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccCCC---CCCCCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHH
Confidence 34444555544322 2222235567777887754 333323 3 6899999999999 8999999
Q ss_pred CeE-----EEEcCeecCCCCChhhhc----------CCccceEEEecCCccc
Q psy2142 87 DFS-----LICSGKTLTDDLSISDLE----------SGSIEIFVPLLGGKLL 123 (168)
Q Consensus 87 ~Q~-----Liy~GK~LeD~~tL~dy~----------~sTL~LvvrllGGKv~ 123 (168)
..+ |+|+-+++.|..||.|.. +.++++.+..+||..-
T Consensus 133 Kik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa~~ 184 (309)
T PF12754_consen 133 KIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGAAV 184 (309)
T ss_dssp ----------------------------------------------------
T ss_pred HhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCccc
Confidence 999 999999999988887753 5688888888998644
No 63
>PRK06437 hypothetical protein; Provisional
Probab=94.90 E-value=0.15 Score=35.02 Aligned_cols=63 Identities=22% Similarity=0.403 Sum_probs=47.5
Q ss_pred EEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 52 IIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 52 IfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
|+|++....++++++..||++|=++ .|++++...+..+|.++..+..|.+ ++.+.++..+-||
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~~~~L~d--gD~Veiv~~V~GG 67 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVLEDHNVKK--EDDVLILEVFSGG 67 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCCceEcCC--CCEEEEEecccCC
Confidence 4556555578888888899988765 4889999999999999986665553 6777776665554
No 64
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=94.89 E-value=0.078 Score=37.06 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=48.2
Q ss_pred ceEEEEEcC---------CceEEEEcCCCCHHHHHHHHhhhc-CCCC--CCeEEEEcCeecCCCCChhhhcCCccceEEE
Q psy2142 49 MKRIIVRGQ---------SNYVLECQQNETVSHLKNKVASLE-KVAL--EDFSLICSGKTLTDDLSISDLESGSIEIFVP 116 (168)
Q Consensus 49 ~MQIfVR~~---------~~~tleV~~s~TV~~LK~kI~~~e-GIp~--~~Q~Liy~GK~LeD~~tL~dy~~sTL~Lvvr 116 (168)
+|+|.|+.. +..++++.+..||.+|.+.+.... ++.. ..-.+..+|+...++..|.+ ++++.+..+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~d--gDeVai~Pp 78 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKD--GDELAIIPP 78 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCC--CCEEEEeCC
Confidence 478888864 236678888899999999997654 1111 12246678888766555544 778888877
Q ss_pred ecCC
Q psy2142 117 LLGG 120 (168)
Q Consensus 117 llGG 120 (168)
..||
T Consensus 79 vsGG 82 (82)
T PLN02799 79 ISGG 82 (82)
T ss_pred CCCC
Confidence 7776
No 65
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=94.85 E-value=0.18 Score=35.21 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=46.8
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecCCC---CChhhhc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLTDD---LSISDLE 107 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~LeD~---~tL~dy~ 107 (168)
..-.|-||.++| ......+++||.+|.+-|....+.+.....|+ |--+.|.++ .||.+.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~g 69 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELA 69 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCC
Confidence 345788999987 55688999999999999976666666667775 667788654 6899987
No 66
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.76 E-value=0.24 Score=35.14 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=46.6
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCC-CCCCeEEE--EcCeecCC-CCChhhhc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKV-ALEDFSLI--CSGKTLTD-DLSISDLE 107 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGI-p~~~Q~Li--y~GK~LeD-~~tL~dy~ 107 (168)
..-.|-||.++| .+...+.++||++|.+-|....+- ......|. |-.+.|.| +.||+|.|
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eag 68 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEAN 68 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCC
Confidence 346788999987 667899999999999999976432 23456665 77888865 68899998
No 67
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.31 E-value=0.057 Score=38.23 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=42.0
Q ss_pred EcCCCCHHHHHHHHhhhcC-CCCCCeEEEEcCeecCCCCChhhhc----CCccceE
Q psy2142 64 CQQNETVSHLKNKVASLEK-VALEDFSLICSGKTLTDDLSISDLE----SGSIEIF 114 (168)
Q Consensus 64 V~~s~TV~~LK~kI~~~eG-Ip~~~Q~Liy~GK~LeD~~tL~dy~----~sTL~Lv 114 (168)
|.++++|.+|++-|..... ..-....|.++|..|+|...|++.. +++|.++
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEE
Confidence 5789999999999988754 6778889999999999999999886 4455554
No 68
>KOG4583|consensus
Probab=94.22 E-value=0.026 Score=50.77 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=48.4
Q ss_pred CCceEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCChhhhc
Q psy2142 47 ENMKRIIVRGQSN----YVLECQQNETVSHLKNKVASLEK--VALEDFSLICSGKTLTDDLSISDLE 107 (168)
Q Consensus 47 ~~~MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~eG--Ip~~~Q~Liy~GK~LeD~~tL~dy~ 107 (168)
+-...++||..+. .+|..+-..||++||..++...- -=..+|+|+|.||.|.|...|.|.-
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence 4456788888753 56788888999999999887642 2235899999999999999999863
No 69
>KOG1639|consensus
Probab=93.95 E-value=0.12 Score=44.97 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=50.1
Q ss_pred eEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhh-cCCCCCCeE----EEEcCeecCCCCChhhhc-CCccceEEEecC
Q psy2142 50 KRIIVRGQSN----YVLECQQNETVSHLKNKVASL-EKVALEDFS----LICSGKTLTDDLSISDLE-SGSIEIFVPLLG 119 (168)
Q Consensus 50 MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~-eGIp~~~Q~----Liy~GK~LeD~~tL~dy~-~sTL~LvvrllG 119 (168)
|.|.+..-+. ...+.+..+||.|++..|... ..+.+..++ +.-+|++|-|+++|++|+ ++...+.+.-+|
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vKDLG 80 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVKDLG 80 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEeccC
Confidence 4555554322 235677889999999776655 456553333 345799999999999999 566677788787
Q ss_pred Cc
Q psy2142 120 GK 121 (168)
Q Consensus 120 GK 121 (168)
-.
T Consensus 81 pQ 82 (297)
T KOG1639|consen 81 PQ 82 (297)
T ss_pred Cc
Confidence 43
No 70
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.16 Score=38.01 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=62.3
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL 122 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv 122 (168)
+.|.|-++++ ..+.+..+.+...|....+...|=..+..+++|.|+-++-++|-++++ +..|.++..-+||..
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~t 102 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGAT 102 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCcc
Confidence 5556656655 567899999999999999999999999999999999999999999998 678888877788764
No 71
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=93.71 E-value=0.55 Score=32.45 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=43.9
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecCC---CCChhhhc
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLTD---DLSISDLE 107 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~LeD---~~tL~dy~ 107 (168)
-.|-||.++| .+-....++||.+|.+-|.....- .....|+ |-.+.|.| +.||.+.|
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~g 66 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAG 66 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcC
Confidence 4688999987 556889999999999999865433 5556666 55677854 68899988
No 72
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=93.39 E-value=0.34 Score=35.08 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=39.0
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCee
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKT 96 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~ 96 (168)
.+++.+. ++.|.|.++-+..+|.++|.++.++|+++..|.|.-..
T Consensus 5 vKV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 5 VKVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 3555554 88999999999999999999999999999999997554
No 73
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=93.06 E-value=0.21 Score=34.97 Aligned_cols=63 Identities=19% Similarity=0.309 Sum_probs=45.2
Q ss_pred EEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCC------eEEE-EcCeecCCCCChhhhc---CCccce
Q psy2142 51 RIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALED------FSLI-CSGKTLTDDLSISDLE---SGSIEI 113 (168)
Q Consensus 51 QIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~------Q~Li-y~GK~LeD~~tL~dy~---~sTL~L 113 (168)
.|.|...+ .+.+.+..+.+|++|...|.+..+++..+ -.|. -+|.+|.++.+|++++ |+.|.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 45666654 37789999999999999999987763332 4555 6899999999999998 666654
No 74
>KOG0013|consensus
Probab=92.89 E-value=0.14 Score=43.49 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=46.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE 107 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~ 107 (168)
+-+.+..-+|+.++|..+..++|+.+-.|++.|+|+.|-|...|.+|+
T Consensus 159 ~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~ 206 (231)
T KOG0013|consen 159 FWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECK 206 (231)
T ss_pred eeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeee
Confidence 778899999999999999999999999999999999999999999998
No 75
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=92.60 E-value=0.37 Score=32.78 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=39.4
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE 107 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~ 107 (168)
|+|+| ++-.++++++.|+.+||.++.. +.-.+||+|-+..++..|.+-+
T Consensus 1 M~I~v---N~k~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~e~D 49 (57)
T PF14453_consen 1 MKIKV---NEKEIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELKEGD 49 (57)
T ss_pred CEEEE---CCEEEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccCCCC
Confidence 77777 4568899999999999998764 3337899999999988887644
No 76
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=92.31 E-value=1 Score=30.08 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=43.8
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC----CCCChhhhcCCccceEEEecCC
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT----DDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le----D~~tL~dy~~sTL~LvvrllGG 120 (168)
|+|+|. +..+++.+..||.+|=+. .+++.+...+.++|..+. ++..|.+ ++.+.++-.+-||
T Consensus 1 m~i~vN---G~~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~~~~~~l~~--gD~vei~~~vgGG 66 (66)
T PRK05659 1 MNIQLN---GEPRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQHASTALRE--GDVVEIVHALGGG 66 (66)
T ss_pred CEEEEC---CeEEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHHcCcccCCC--CCEEEEEEEecCC
Confidence 666664 457788888899888654 588888888999998876 3333322 6777777665554
No 77
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.26 E-value=1 Score=31.66 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=43.6
Q ss_pred ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecCC---CCChhhhc
Q psy2142 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLTD---DLSISDLE 107 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~LeD---~~tL~dy~ 107 (168)
.-.|-||.++| ..-....++||.+|.+-|....+.+ ....|+ |--|.+.+ +.||.+.|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elg 68 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELG 68 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCC
Confidence 35788999987 4457888999999999998765432 445565 77788864 37899988
No 78
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.71 E-value=0.48 Score=32.30 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=43.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCC----CCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKV----ALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGI----p~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
..+++++..||.+|.+.+....+- ......+..+|+...++..|.+ ++++.+..++.||
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~--gD~v~i~ppv~GG 80 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKD--GDEVAIIPPVSGG 80 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCC--CCEEEEeCCCCCC
Confidence 567777789999999999876431 3345667789999885554443 6788888877776
No 79
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.15 E-value=2.3 Score=30.59 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=47.3
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC--eecC--------CCCChhhhc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG--KTLT--------DDLSISDLE 107 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G--K~Le--------D~~tL~dy~ 107 (168)
...+|-||.++| .+-....++||++|.+-|... +..++...|+.+= +.++ ++.||++.|
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaG 73 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAG 73 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcC
Confidence 456899999987 445778999999999999754 5566889998777 8886 257999998
No 80
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=90.91 E-value=0.8 Score=30.72 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=43.1
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC----CChhhhcCCccceEEEecCC
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD----LSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~----~tL~dy~~sTL~LvvrllGG 120 (168)
++..+++++..||.+|.+++ +++++...+..+|+.+..+ ..|. .++++.+...+-||
T Consensus 5 Ng~~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~~~~~~L~--~gD~V~ii~~v~GG 65 (65)
T cd00565 5 NGEPREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRSEWASTPLQ--DGDRIEIVTAVGGG 65 (65)
T ss_pred CCeEEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHHcCceecC--CCCEEEEEEeccCC
Confidence 45678888889999998865 4777888889999998654 2222 27888888877776
No 81
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=90.87 E-value=0.9 Score=31.98 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=43.7
Q ss_pred EEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC----eecCCCCChhhhcCCccc
Q psy2142 54 VRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG----KTLTDDLSISDLESGSIE 112 (168)
Q Consensus 54 VR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G----K~LeD~~tL~dy~~sTL~ 112 (168)
|=.+++ ..+.|.|++||.++=+.+.+.-|+.++.-.|.+.| +++..++..+...+..|.
T Consensus 4 V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~~~d~~~L~~~El~ 68 (72)
T cd01760 4 VYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDLDTDSSSLAGEELE 68 (72)
T ss_pred EECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCchhhhhhhcCCEEE
Confidence 334554 67899999999999999999999999998888775 556655545444443333
No 82
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=89.59 E-value=2.3 Score=28.16 Aligned_cols=61 Identities=15% Similarity=0.303 Sum_probs=41.8
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC----CChhhhcCCccceEEEecCC
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD----LSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~----~tL~dy~~sTL~LvvrllGG 120 (168)
|+|+| ++-.+++.+..||.+|-+.+. ++ ....+-.+|.....+ ..|.+ ++++.++..+-||
T Consensus 1 m~i~v---Ng~~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~~~~~~L~~--gD~vei~~~v~GG 65 (65)
T PRK06944 1 MDIQL---NQQTLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQHAARALAA--GDRLDLVQPVAGG 65 (65)
T ss_pred CEEEE---CCEEEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchhcccccCCC--CCEEEEEeeccCC
Confidence 56666 445788888889999988754 33 345677899888532 22222 7889888877776
No 83
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=88.91 E-value=2.4 Score=28.31 Aligned_cols=61 Identities=20% Similarity=0.387 Sum_probs=40.3
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCC----CCChhhhcCCccceEEEecCC
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTD----DLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD----~~tL~dy~~sTL~LvvrllGG 120 (168)
|+|.|.+ -.++++ ..|+.+|.+.+ +++++...+-.+|..+.- +..|.+ ++.+.++..+-||
T Consensus 1 m~i~~Ng---~~~~~~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~~~~~~~~L~d--gD~Ieiv~~V~GG 65 (65)
T PRK06488 1 MKLFVNG---ETLQTE-ATTLALLLAEL----DYEGNWLATAVNGELVHKEARAQFVLHE--GDRIEILSPMQGG 65 (65)
T ss_pred CEEEECC---eEEEcC-cCcHHHHHHHc----CCCCCeEEEEECCEEcCHHHcCccccCC--CCEEEEEEeccCC
Confidence 6677744 455564 45899888764 566666678899998863 222222 7788887777666
No 84
>PRK07440 hypothetical protein; Provisional
Probab=88.64 E-value=4 Score=28.14 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=45.8
Q ss_pred CceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC----CCCChhhhcCCccceEEEecCC
Q psy2142 48 NMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT----DDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 48 ~~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le----D~~tL~dy~~sTL~LvvrllGG 120 (168)
..|+|.|.+ -.+++....||.+|-+ ..++++....+-++|..+. ++..|.+ ++.+.++-.+-||
T Consensus 3 ~~m~i~vNG---~~~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~~w~~~~L~~--gD~IEIv~~v~GG 70 (70)
T PRK07440 3 NPITLQVNG---ETRTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQFWEQTQVQP--GDRLEIVTIVGGG 70 (70)
T ss_pred CceEEEECC---EEEEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHHHcCceecCC--CCEEEEEEEecCC
Confidence 368888844 4688888889998765 3578888888999999996 2222222 6788877666665
No 85
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=88.42 E-value=3.8 Score=27.61 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=42.6
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC--CChhhhcCCccceEEEecCC
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD--LSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~--~tL~dy~~sTL~LvvrllGG 120 (168)
|+|.| ++..+++.+..||.+|-+++ +++.....+-.+|..+.-+ .+..=..++.+.++-.+-||
T Consensus 1 m~i~v---Ng~~~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 1 MQILF---NDQPMQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPREQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CEEEE---CCeEEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChHHcCccccCCCCEEEEEEEccCC
Confidence 66766 45577888888999988764 4555667788999998622 11111127788877766665
No 86
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=87.83 E-value=1.9 Score=29.90 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=41.9
Q ss_pred eEEEEcCC-CCHHHHHHHHhhhcC-CC--CCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 60 YVLECQQN-ETVSHLKNKVASLEK-VA--LEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 60 ~tleV~~s-~TV~~LK~kI~~~eG-Ip--~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
.++++.++ .||.+|.+.+.+... +- .....+..+|+...++..|.+ ++++.+..+..||
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~d--gDevai~PpvsGG 80 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNE--GDEVAFIPPVSGG 80 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCC--CCEEEEeCCCCCC
Confidence 46788776 899999999988753 11 123467788888887655544 6788887777776
No 87
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=86.99 E-value=3.6 Score=27.77 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=43.7
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC--CChhhhc-CCccceEEEecCC
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD--LSISDLE-SGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~--~tL~dy~-~sTL~LvvrllGG 120 (168)
|+|.| ++..+++.+..||.+|=+. .++++....+.++|.++..+ .+ ... ++.+.++-.+-||
T Consensus 1 m~i~v---NG~~~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~~--~L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 1 MIVVV---NEEQVEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWAT--KLRDGARLEVVTAVQGG 65 (65)
T ss_pred CEEEE---CCEEEEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhhh--hcCCCCEEEEEeeccCC
Confidence 56666 4457777788888877654 58899999999999977432 22 233 7888877665555
No 88
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=86.75 E-value=5.4 Score=28.82 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=46.2
Q ss_pred ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCChhhhc
Q psy2142 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT---DDLSISDLE 107 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le---D~~tL~dy~ 107 (168)
.-+|-||.++| ..-....++++++|-.-|.. .|.+++...|+ |-=|.+. .+.||.+.|
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~G 69 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAG 69 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcC
Confidence 45899999988 44577888999999999997 67788888887 5556663 247899988
No 89
>smart00455 RBD Raf-like Ras-binding domain.
Probab=86.67 E-value=3.2 Score=28.78 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=40.8
Q ss_pred cCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC--eecCCCCChhhh
Q psy2142 56 GQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG--KTLTDDLSISDL 106 (168)
Q Consensus 56 ~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G--K~LeD~~tL~dy 106 (168)
.+++ ..+.+.|+.||.++=+.+.+..|+.+++-.|+..| ++|+-++.....
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~~~~~l 60 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQPISSL 60 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCCccccc
Confidence 3444 67899999999999999999999999999999855 677655544443
No 90
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=85.61 E-value=3.9 Score=27.26 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=41.3
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCC--ChhhhcCCccceEEEecCC
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDL--SISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~--tL~dy~~sTL~LvvrllGG 120 (168)
++..+++.+..||.+|.+.+ +++++...+..+|..+..+. +..=..++.+.++..+-||
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence 45678888888999998864 57778888889999985321 1111127788887777666
No 91
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=85.30 E-value=2.5 Score=30.86 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=33.7
Q ss_pred EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCC---CCeEEEE
Q psy2142 52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVAL---EDFSLIC 92 (168)
Q Consensus 52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~---~~Q~Liy 92 (168)
+.++.++| +-+.+.|++.+.+|++.|+++.|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 55677766 66899999999999999999999987 4666666
No 92
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=84.89 E-value=8.8 Score=27.19 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=46.9
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--C-CCChhhhc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT--D-DLSISDLE 107 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le--D-~~tL~dy~ 107 (168)
...+|-||.++| .+-....++++++|-.-|.. .|.+++...|+ |-=+.+. | +.||.+.|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~-~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~g 68 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVAS-KGYPIDEYKLLSSWPRRDLTQLDPNFTLLELK 68 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCCCCcCCCCCCcHHHcC
Confidence 456899999987 44588999999999999986 57777888886 6667774 2 46899988
No 93
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=84.47 E-value=4.2 Score=28.99 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=42.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC--eecCCCCChhhhcCCccceE
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG--KTLTDDLSISDLESGSIEIF 114 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G--K~LeD~~tL~dy~~sTL~Lv 114 (168)
..+.+.|.+||.++=.++.+.-|++++.--++..| ++|..++..+.+.+..+.+.
T Consensus 12 T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~qD~~~L~~~El~vE 68 (73)
T cd01817 12 TVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQDSSVLAGQEVRLE 68 (73)
T ss_pred EEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccCCccceeeccEEEEE
Confidence 67899999999999999999999999888787766 57766655555444444443
No 94
>KOG4250|consensus
Probab=81.54 E-value=2.8 Score=41.08 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=39.2
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhh
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDL 106 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy 106 (168)
.+++-+++++|+..+.+.|....|||.+.|.|+|.|...-.+. ..+|
T Consensus 326 ~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~-~~Q~ 372 (732)
T KOG4250|consen 326 SHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLED-SAQC 372 (732)
T ss_pred EEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCc-cccc
Confidence 3889999999999999999999999999999999976554333 3444
No 95
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=81.30 E-value=3.3 Score=27.78 Aligned_cols=59 Identities=22% Similarity=0.391 Sum_probs=43.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcC-C-CCCCeEEEEcCeecCC---CCChhhhcCCccceEEEecCC
Q psy2142 60 YVLECQQNETVSHLKNKVASLEK-V-ALEDFSLICSGKTLTD---DLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eG-I-p~~~Q~Liy~GK~LeD---~~tL~dy~~sTL~LvvrllGG 120 (168)
..+++.+..||.+|.+.+..... + ......+..+|+...+ +..|.+ ++++.++..+.||
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~--gD~V~i~ppvsGG 77 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKD--GDEVAILPPVSGG 77 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEET--TEEEEEEESTSTS
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCC--CCEEEEECCCCCC
Confidence 46788889999999999987652 1 2257788899999988 443322 7788888777776
No 96
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=81.21 E-value=14 Score=25.54 Aligned_cols=56 Identities=16% Similarity=0.091 Sum_probs=38.9
Q ss_pred cCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCChhhhcCCcc
Q psy2142 56 GQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLIC--SGKTLTDDLSISDLESGSI 111 (168)
Q Consensus 56 ~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy--~GK~LeD~~tL~dy~~sTL 111 (168)
-+++ ..+.|.|++||.+.=+.+-+.-|+.++.-.++. ..++|..++..+...+-.+
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~L~~~El 66 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSSLPGEEL 66 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGGGTTSEE
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceeeecCCEE
Confidence 3554 568999999999999999999999998766653 5677777776666554333
No 97
>KOG3206|consensus
Probab=80.10 E-value=4.1 Score=34.72 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=45.4
Q ss_pred EEEEEcCC-c--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE-EcC-----eecCC-CCChhhhc---CCccceE
Q psy2142 51 RIIVRGQS-N--YVLECQQNETVSHLKNKVASLEKVALEDFSLI-CSG-----KTLTD-DLSISDLE---SGSIEIF 114 (168)
Q Consensus 51 QIfVR~~~-~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li-y~G-----K~LeD-~~tL~dy~---~sTL~Lv 114 (168)
.|+|-... . ......++.||.++|.++.-..|.+++.+.|. |.| -.|.| +..|..|. +..||++
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 45554432 2 34567899999999999999999999999886 444 35654 46688887 4455543
No 98
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=78.71 E-value=9.3 Score=26.64 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=40.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCC------C-----CCCeEEEEcCeecCCCC--ChhhhcCCccceEEEecCC
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKV------A-----LEDFSLICSGKTLTDDL--SISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGI------p-----~~~Q~Liy~GK~LeD~~--tL~dy~~sTL~LvvrllGG 120 (168)
.+++++ ..||.+|.+.+.+...- . -....+..+|+...++. .|.+ ++++.+..++.||
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~d--gdev~i~PpvsGG 88 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKD--GDVVAIFPPVSGG 88 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCC--CCEEEEeCCCcCC
Confidence 456665 78999999999877531 0 12356777888886554 3332 7888888888776
No 99
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=76.96 E-value=17 Score=25.22 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=44.0
Q ss_pred ceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhh-hc-CCccceEEEecCC
Q psy2142 49 MKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD-LE-SGSIEIFVPLLGG 120 (168)
Q Consensus 49 ~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~d-y~-~sTL~LvvrllGG 120 (168)
.|+|.+. +-++++....|+++|-++ .|++++.-.+.++|.++..+.-... +. ++.+.++-.+-||
T Consensus 2 ~m~i~~n---g~~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 2 PMTIQLN---GKEVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred cEEEEEC---CEEEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccchhhhhccccCCCEEEEEEeecCC
Confidence 3555554 678899888999998764 6888899999999999975321111 12 4566665544444
No 100
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=76.06 E-value=12 Score=26.91 Aligned_cols=65 Identities=8% Similarity=0.191 Sum_probs=44.3
Q ss_pred CceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhh--c-CCccceEEEecCC
Q psy2142 48 NMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDL--E-SGSIEIFVPLLGG 120 (168)
Q Consensus 48 ~~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy--~-~sTL~LvvrllGG 120 (168)
..|+|.|. +-.+++++..||.+|=+. .++++....+-.+|.++.-+. -+++ . ++.|.++-.+-||
T Consensus 17 ~~m~I~VN---G~~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr~~-w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 17 VLITISIN---DQSIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPRSE-WQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred ceEEEEEC---CeEEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCHHH-cCcccCCCCCEEEEEEEecCC
Confidence 35777774 457788888898887664 478888888889999995321 1111 1 6788877666555
No 101
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=74.98 E-value=5.2 Score=28.88 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=32.9
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSG 94 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G 94 (168)
++.+.+.+..+.++|...|+++...+++...|.|.-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 566899999999999999999999999999999953
No 102
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=74.25 E-value=17 Score=24.63 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=41.4
Q ss_pred eEEEEEcCCceEEEEcCC-CCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCC--ChhhhcCCccceEEEecCC
Q psy2142 50 KRIIVRGQSNYVLECQQN-ETVSHLKNKVASLEKVALEDFSLICSGKTLTDDL--SISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s-~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~--tL~dy~~sTL~LvvrllGG 120 (168)
|+|.|.+ -.+++.+. .||.+|=+ ..++++....+-++|.++.-+. +..=-.++.+.++-.+-||
T Consensus 1 m~I~vNG---~~~~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 1 MNLKING---NQIEVPESVKTVAELLT----HLELDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CEEEECC---EEEEcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEecCC
Confidence 6666644 46677666 57887765 3578888888999999995431 1111127788877665555
No 103
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=73.18 E-value=17 Score=24.68 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=32.9
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSG 94 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G 94 (168)
+.+.+.+.++.|..+|+++|.+..+++.+...|-|..
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 3478899999999999999999999988889999974
No 104
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=72.24 E-value=16 Score=32.80 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=46.5
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC----CChhhhcCCccceEEEecCCcc
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD----LSISDLESGSIEIFVPLLGGKL 122 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~----~tL~dy~~sTL~LvvrllGGKv 122 (168)
|+|.|. +..+++.++.||.+|-++ .+++++...+.++|.++.-+ ..|.+ ++.|.++-.+-||..
T Consensus 1 M~I~VN---Gk~~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~~w~~t~Lke--GD~IEII~~VgGGs~ 68 (326)
T PRK11840 1 MRIRLN---GEPRQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRSEYGQVALEE--GDELEIVHFVGGGSD 68 (326)
T ss_pred CEEEEC---CEEEecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHHHcCccccCC--CCEEEEEEEecCCCC
Confidence 667764 446788888898887664 58899999999999999632 22222 778888777777754
No 105
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=71.79 E-value=9.7 Score=28.10 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=41.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
....++=.+.++.||..++.+.+++-+.--++.....|+.+.+|-+-+ ..++.+.+..
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence 345667788999999999999999999999999999999999988865 4566666544
No 106
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=70.40 E-value=24 Score=23.93 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=34.8
Q ss_pred EEEEEcCCc-eE-EEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC
Q psy2142 51 RIIVRGQSN-YV-LECQQNETVSHLKNKVASLEKVALEDFSLICSG 94 (168)
Q Consensus 51 QIfVR~~~~-~t-leV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G 94 (168)
.|.+.-.+. +. +.+..+.|..+|.++|++..+++.....|.|..
T Consensus 3 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 3 RVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 344444433 44 899999999999999999999998899999964
No 107
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=70.04 E-value=19 Score=25.69 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCC-CCeEEEEcC
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVAL-EDFSLICSG 94 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~-~~Q~Liy~G 94 (168)
+.+.+.+.++.+..+|+++|++..++.. ....|-|--
T Consensus 10 d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 10 EKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 3477899999999999999999999865 677777743
No 108
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=69.80 E-value=31 Score=23.20 Aligned_cols=54 Identities=20% Similarity=0.110 Sum_probs=38.2
Q ss_pred EEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCC-CCCeEEEE----c--CeecCCCCChhhhc
Q psy2142 54 VRGQSN--YVLECQQNETVSHLKNKVASLEKVA-LEDFSLIC----S--GKTLTDDLSISDLE 107 (168)
Q Consensus 54 VR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp-~~~Q~Liy----~--GK~LeD~~tL~dy~ 107 (168)
|+.+++ .+++|+++.|+.+|=++|++..||. .+-.-|.| . ..-|+.+.+|.+..
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~ 63 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQL 63 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGST
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHc
Confidence 455665 6789999999999999999999984 44455666 1 23345566666654
No 109
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=69.74 E-value=20 Score=24.88 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=33.8
Q ss_pred EEEEcC-CCCHHHHHHHHhhhcC-----CCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 61 VLECQQ-NETVSHLKNKVASLEK-----VALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 61 tleV~~-s~TV~~LK~kI~~~eG-----Ip~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
.+++++ ..||.+|++.|.+... ......++.-++..-.++..|.+ ++.+-+..+..||
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~d--gDeVai~PPVsGG 81 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTD--GDEVAFFPPVTGG 81 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCC--CCEEEEeCCCCCC
Confidence 455543 4799999999987642 11223344445544343333332 6777777777776
No 110
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=69.40 E-value=7.5 Score=30.18 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=37.0
Q ss_pred EEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhh
Q psy2142 62 LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDL 106 (168)
Q Consensus 62 leV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy 106 (168)
+-|..+.||+++..-|....++++++..|..++..+..+.++++.
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 368999999999999999999999996666666555667788873
No 111
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=68.09 E-value=24 Score=23.72 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=33.0
Q ss_pred EEEEcCC-ceEEEEc-CCCCHHHHHHHHhhhcCCCCCCeEEEEcC
Q psy2142 52 IIVRGQS-NYVLECQ-QNETVSHLKNKVASLEKVALEDFSLICSG 94 (168)
Q Consensus 52 IfVR~~~-~~tleV~-~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G 94 (168)
|.++..+ .+.+.+. .+.|..+|+++|.+..+++.....|.|..
T Consensus 3 vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 3 VKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred EEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 3344443 4777887 89999999999999999987777777754
No 112
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=67.59 E-value=5.9 Score=29.80 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=25.2
Q ss_pred EEEEcCeecCCCCChhhhc--C--CccceEEEecCCccc
Q psy2142 89 SLICSGKTLTDDLSISDLE--S--GSIEIFVPLLGGKLL 123 (168)
Q Consensus 89 ~Liy~GK~LeD~~tL~dy~--~--sTL~LvvrllGGKv~ 123 (168)
.|.|+|+.|.++.+|++|- + +.|-+-+.-.|+...
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~g~P 41 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQGPP 41 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCCCCC
Confidence 5899999999999999995 3 344444555665433
No 113
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=64.15 E-value=26 Score=25.58 Aligned_cols=57 Identities=7% Similarity=0.092 Sum_probs=39.3
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc-------CeecCCCCChhhh
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICS-------GKTLTDDLSISDL 106 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~-------GK~LeD~~tL~dy 106 (168)
.++|.-+..+-+|.|++.+|+.++=+.+++..++..+.-.-++. .+.++|...|.++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 34454444458899999999999999999998875554333332 4566676666554
No 114
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=61.12 E-value=34 Score=23.52 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=32.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCC--CCCeEEEE------cCeecCCCCC
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVA--LEDFSLIC------SGKTLTDDLS 102 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp--~~~Q~Liy------~GK~LeD~~t 102 (168)
.+|.|+.++|..+|-+.+.+..+++ +.+..|+= ..+.|+|+..
T Consensus 15 kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~ 65 (87)
T cd01768 15 KTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDEC 65 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCC
Confidence 7899999999999999999999987 55555541 3456665543
No 115
>KOG2086|consensus
Probab=59.96 E-value=21 Score=32.78 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=43.4
Q ss_pred ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcC-CCCCCeEEE--EcCeecCC-CCChhhhc
Q psy2142 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEK-VALEDFSLI--CSGKTLTD-DLSISDLE 107 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eG-Ip~~~Q~Li--y~GK~LeD-~~tL~dy~ 107 (168)
.-.|-||..+| .+..++-.-||.+|+..|...-. -+..-+.|+ |--|+|.| +.||++-|
T Consensus 305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~Ag 369 (380)
T KOG2086|consen 305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAG 369 (380)
T ss_pred cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhcc
Confidence 34566676665 67799999999999999998754 344355555 56688866 57899887
No 116
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=58.96 E-value=21 Score=27.02 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=41.5
Q ss_pred CCceEEEEEcC--------CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeec-CCCCChhhh
Q psy2142 47 ENMKRIIVRGQ--------SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTL-TDDLSISDL 106 (168)
Q Consensus 47 ~~~MQIfVR~~--------~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~L-eD~~tL~dy 106 (168)
+..+.|.|.-. +.--+-|.++.||+++...|.....+++++-..+|-|..+ ..+.++++.
T Consensus 22 p~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 22 PDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred CCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHH
Confidence 45556666421 2233568999999999999999999988885555544444 666778874
No 117
>KOG3439|consensus
Probab=58.54 E-value=52 Score=25.45 Aligned_cols=68 Identities=9% Similarity=0.103 Sum_probs=49.4
Q ss_pred CceEEEEEcCC------ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC--CCCChhh---hcCCccceEE
Q psy2142 48 NMKRIIVRGQS------NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT--DDLSISD---LESGSIEIFV 115 (168)
Q Consensus 48 ~~MQIfVR~~~------~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le--D~~tL~d---y~~sTL~Lvv 115 (168)
...+|.+|... .....|++++|++.+-..|....++++++|..+|-..-.. -++.+++ |-+...+|++
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~~d~~Lvl 107 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFGTDGKLVL 107 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcCCCCEEEE
Confidence 34677777653 2567999999999999999999999999999999887773 2344444 3244445544
No 118
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=57.94 E-value=35 Score=23.25 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=33.4
Q ss_pred eEEEEEcCC----ceEEEEcCCCCHHHHHHHHhhhcCC--CCCCeEEE
Q psy2142 50 KRIIVRGQS----NYVLECQQNETVSHLKNKVASLEKV--ALEDFSLI 91 (168)
Q Consensus 50 MQIfVR~~~----~~tleV~~s~TV~~LK~kI~~~eGI--p~~~Q~Li 91 (168)
++|+..... ..+|.|+++.|+.+|-+.+.+..++ .+.+..|+
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 566665554 4789999999999999999999998 55566664
No 119
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=57.83 E-value=30 Score=26.86 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=38.9
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCC-CeEEEEc---C---eecCCCCChhhhc
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALE-DFSLICS---G---KTLTDDLSISDLE 107 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~-~Q~Liy~---G---K~LeD~~tL~dy~ 107 (168)
+.|.|-.+++ ..+.++++.|+.+|-+.|+...||+.. ..-|.+. + ..|+...+|.+..
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~ 70 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQD 70 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhc
Confidence 4556666665 678999999999999999999999542 2233321 1 3455555566554
No 120
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=57.63 E-value=75 Score=23.48 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=40.4
Q ss_pred CceEEEEcCCCCHHHHHHHHhhh------cCCCCC-CeEEEEcCee--cCCCCChhhhc--------CCccceEEEe
Q psy2142 58 SNYVLECQQNETVSHLKNKVASL------EKVALE-DFSLICSGKT--LTDDLSISDLE--------SGSIEIFVPL 117 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~------eGIp~~-~Q~Liy~GK~--LeD~~tL~dy~--------~sTL~Lvvrl 117 (168)
.++++.+++++|+.+|.+.+-.. ..-+++ +..|--.|+. |..+..|.+|. +.+++|++..
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 45999999999999999887654 222333 6666666653 44556666654 6778877643
No 121
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=56.49 E-value=32 Score=25.78 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=35.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCC-eEEEEcCeecCCCCChhhh
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALED-FSLICSGKTLTDDLSISDL 106 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~-Q~Liy~GK~LeD~~tL~dy 106 (168)
.-+=|..+.||+++...|.....+++++ ..|+.++..+..+.++++.
T Consensus 35 ~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 35 KKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp SEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred cEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 3445789999999999999999997776 5566666555778889884
No 122
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=53.86 E-value=40 Score=24.62 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=33.8
Q ss_pred EEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC
Q psy2142 51 RIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG 94 (168)
Q Consensus 51 QIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G 94 (168)
|+.|+..+. .-+.++...|.+.|+++|.....+|+...-|.|--
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiD 46 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYID 46 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEc
Confidence 445554432 45667778899999999999999999888888844
No 123
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=52.78 E-value=49 Score=24.41 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=33.9
Q ss_pred EEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc
Q psy2142 51 RIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICS 93 (168)
Q Consensus 51 QIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~ 93 (168)
++.=.+.++..+.|+.+.|..+|+.++++..+++.. ..|-|.
T Consensus 16 ~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 16 QLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred CEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 343445556889999999999999999999999876 777774
No 124
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=51.92 E-value=25 Score=25.22 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=40.0
Q ss_pred EEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCChhhhcCCccceEE
Q psy2142 52 IIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLIC--SGKTLTDDLSISDLESGSIEIFV 115 (168)
Q Consensus 52 IfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy--~GK~LeD~~tL~dy~~sTL~Lvv 115 (168)
+.|++.+. .-.-|-. .|..+|+.+..+..+++.+..+|.. .|-.++|+.-+..+...|..+++
T Consensus 5 ~kv~~~~r~~k~Gv~A-~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~lm~L 70 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA-SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTLPDNTVLMLL 70 (78)
T ss_dssp EEEEETTSSCEEEEEE-SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCSSSSEEEEEE
T ss_pred EEEecCCCCceEeEEc-CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhCCCCCEEEEE
Confidence 34555432 2333332 4999999999999999977766665 67777776544444555655554
No 125
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=51.51 E-value=77 Score=23.26 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=33.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC----e-ecCC-CCChhhhc
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG----K-TLTD-DLSISDLE 107 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G----K-~LeD-~~tL~dy~ 107 (168)
++...+..|||..|...+.+...| .++-+|.-.+ - .|.+ +.||+|.+
T Consensus 16 ~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~ 68 (88)
T PF14836_consen 16 LTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAG 68 (88)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT
T ss_pred hHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHcc
Confidence 677889999999999999999999 7778998533 2 3544 46888877
No 126
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=48.72 E-value=4.2 Score=29.16 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=9.6
Q ss_pred hhhcccceeeeccC
Q psy2142 8 RLAHSIELCTWHLN 21 (168)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (168)
++|-=.|||+||.-
T Consensus 57 k~aIFVdGCFWHgh 70 (75)
T PF03852_consen 57 KIAIFVDGCFWHGH 70 (75)
T ss_dssp TEEEEEE-TTTTT-
T ss_pred CEEEEEecceeCCC
Confidence 56667899999963
No 127
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.74 E-value=79 Score=21.85 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=31.1
Q ss_pred eEEEEEc---CCceEEEEcCCCCHHHHHHHHhhhcCCCC--CCeEEE
Q psy2142 50 KRIIVRG---QSNYVLECQQNETVSHLKNKVASLEKVAL--EDFSLI 91 (168)
Q Consensus 50 MQIfVR~---~~~~tleV~~s~TV~~LK~kI~~~eGIp~--~~Q~Li 91 (168)
++|+.-. ....+|.|++++|+.+|=..+.+..+++. ++-.|+
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 4455544 22378999999999999999999999864 455554
No 128
>KOG0007|consensus
Probab=45.44 E-value=6.9 Score=34.68 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCCh
Q psy2142 66 QNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSI 103 (168)
Q Consensus 66 ~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL 103 (168)
-++.|..+|+++....+|+++-|++.+.|..|.|...+
T Consensus 302 ~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 302 LSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred ccccccccccccccccccchhheeeccCCcccCccccc
Confidence 56799999999999999999999999999999997443
No 129
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=44.40 E-value=1.2e+02 Score=24.63 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=53.9
Q ss_pred ccCCcceeeeccCCccccccceeEEEeeCCceEEEEEcCCceEEEEcC-CCCHHHHHHHHhhhcCCCCCCeEEEEcCeec
Q psy2142 19 HLNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQ-NETVSHLKNKVASLEKVALEDFSLICSGKTL 97 (168)
Q Consensus 19 ~~~~~~~~~~~~~~sf~~~~~~~~~~~~~~~MQIfVR~~~~~tleV~~-s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~L 97 (168)
++-|-+-.|.|-.+.-+.+.+=..+......|.|.|+. +.+-++++. .+.+..|++...+..-.+- =+..|+-+
T Consensus 37 p~LPk~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v-Gri~lele~~~~~ie~I~~iCee~lpf~y----~i~~G~f~ 111 (153)
T PF02505_consen 37 PRLPKTVPYGPARGTPVNHPDRKVINVGGEEVELTVKV-GRIILELEDEEDVIEKIREICEEVLPFGY----DIKEGKFI 111 (153)
T ss_pred CCCCCCCCCCCCCCCcCCCCcceEEEECCEEEEEEEEE-eEEEEEecCcHHHHHHHHHHHHHhCCCce----EeeeeEEe
Confidence 34445555666655544444444444445566776665 236788888 7888888877766543222 23579999
Q ss_pred CCCCChhhhc
Q psy2142 98 TDDLSISDLE 107 (168)
Q Consensus 98 eD~~tL~dy~ 107 (168)
....|++||-
T Consensus 112 r~~~TvtDY~ 121 (153)
T PF02505_consen 112 RTKPTVTDYA 121 (153)
T ss_pred ccCCchhhhh
Confidence 9999999985
No 130
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=43.85 E-value=41 Score=24.00 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=35.6
Q ss_pred CHHHHHHHHhhhcCCCCCCeEE--EEcCeecCCCCChhhhcCCccceEE
Q psy2142 69 TVSHLKNKVASLEKVALEDFSL--ICSGKTLTDDLSISDLESGSIEIFV 115 (168)
Q Consensus 69 TV~~LK~kI~~~eGIp~~~Q~L--iy~GK~LeD~~tL~dy~~sTL~Lvv 115 (168)
|..+|+.+..+..++|...-+| .-.|-.++|++-+......|..+++
T Consensus 20 sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tLp~nt~l~~L 68 (74)
T smart00266 20 SLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTLPDNTELMAL 68 (74)
T ss_pred CHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcCCCCcEEEEE
Confidence 8999999999999998554444 4588888887666666666666555
No 131
>KOG0012|consensus
Probab=43.07 E-value=34 Score=31.33 Aligned_cols=55 Identities=7% Similarity=0.153 Sum_probs=46.3
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC--CChhhhcCCccc
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD--LSISDLESGSIE 112 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~--~tL~dy~~sTL~ 112 (168)
..++++|..+-....++..+....|++.+..-|+|++.+|.+. ..|.+||....+
T Consensus 13 ~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 13 KKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred eeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccce
Confidence 3478899999999999999999999999999999999999765 568888843333
No 132
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=42.53 E-value=67 Score=23.15 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=35.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCee-c-CCCCChhhh
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKT-L-TDDLSISDL 106 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~-L-eD~~tL~dy 106 (168)
-.+-|+++.|++++..-|....++++++-...|-+.. + ..++++++.
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~L 66 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNL 66 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHH
Confidence 4567999999999999999999998877555555554 3 345777773
No 133
>PRK04171 ribosome biogenesis protein; Provisional
Probab=41.90 E-value=47 Score=28.27 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCceEEEEcCCCCH-------HHHHHHHhhhcCCCCCCeEEE
Q psy2142 47 ENMKRIIVRGQSNYVLECQQNETV-------SHLKNKVASLEKVALEDFSLI 91 (168)
Q Consensus 47 ~~~MQIfVR~~~~~tleV~~s~TV-------~~LK~kI~~~eGIp~~~Q~Li 91 (168)
+..+||+|.+.++..++|+|..-| ..|.+++-...-||++...|+
T Consensus 79 ~G~L~VYIhT~~~~lI~V~P~~RiPR~y~rF~gLM~qLL~k~~I~~~~~~Ll 130 (222)
T PRK04171 79 EGKLRVYIHTRDDKVIYVNPETRLPKNYNRFVGLMEQLLKEGRVPPNGEPLL 130 (222)
T ss_pred cCCeEEEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccCCCCcchh
Confidence 577999999999999999999855 566677776677887655554
No 134
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=39.69 E-value=29 Score=28.63 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=26.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCC-----eEEEEcC-----eecCCCC--Chhhh
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALED-----FSLICSG-----KTLTDDL--SISDL 106 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~-----Q~Liy~G-----K~LeD~~--tL~dy 106 (168)
|.+-|.+++|..++|++|.++.|++..+ ..|+-.+ .-|+|+. .|.+-
T Consensus 135 F~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~~~ 193 (213)
T PF14533_consen 135 FLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILFDE 193 (213)
T ss_dssp EEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT-T----GG
T ss_pred EEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceeccccchhhhhhh
Confidence 6789999999999999999999986543 3444444 4567765 45443
No 135
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=39.22 E-value=1.2e+02 Score=22.11 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHhhhcCCCC-CCeEEEEcC
Q psy2142 66 QNETVSHLKNKVASLEKVAL-EDFSLICSG 94 (168)
Q Consensus 66 ~s~TV~~LK~kI~~~eGIp~-~~Q~Liy~G 94 (168)
++.+..+|+++|++..++++ .+..|.|.-
T Consensus 23 ~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 23 LDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 57899999999999999988 666677754
No 136
>COG5417 Uncharacterized small protein [Function unknown]
Probab=38.88 E-value=1e+02 Score=22.42 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=40.1
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCC-----CCCeEEEEcCeecCCCCChhhhc
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVA-----LEDFSLICSGKTLTDDLSISDLE 107 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp-----~~~Q~Liy~GK~LeD~~tL~dy~ 107 (168)
.+.+.++...+|..|=..+.+.+.|. -.+.+..-.++.|.++..|.+|+
T Consensus 18 ~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~ 71 (81)
T COG5417 18 TYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQ 71 (81)
T ss_pred eEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEecc
Confidence 37788888899998888777776652 24678889999999999999998
No 137
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=38.02 E-value=1.5e+02 Score=21.22 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICS 93 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~ 93 (168)
+..+++|.|+.|+.+-=.+.-+.-|+.++. +.+|.
T Consensus 10 QrT~V~vrpG~tl~daL~KaLk~R~l~pe~-C~V~~ 44 (74)
T cd01816 10 QRTVVNVRPGMTLRDALAKALKVRGLQPEC-CAVFR 44 (74)
T ss_pred CeEEEEecCCcCHHHHHHHHHHHcCCChhH-eEEEE
Confidence 336689999999999999999899998754 44443
No 138
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=37.05 E-value=1.1e+02 Score=22.07 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=35.7
Q ss_pred EEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCC
Q psy2142 54 VRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTD 99 (168)
Q Consensus 54 VR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD 99 (168)
|-.+++ .++-|.|++|+.++=+.+....++.|++..|-..-...+|
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~ 51 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMEN 51 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCC
Confidence 344555 6789999999999999999999999998877654333344
No 139
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=36.68 E-value=60 Score=23.33 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=39.8
Q ss_pred EEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeE--EEEcCeecCCCCChhhhcCCccceEE
Q psy2142 53 IVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFS--LICSGKTLTDDLSISDLESGSIEIFV 115 (168)
Q Consensus 53 fVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~--Liy~GK~LeD~~tL~dy~~sTL~Lvv 115 (168)
.|++.+. .-+-|-. .|..+|+.+..+..++|...-+ |.-.|-.++|++-...+...|..+++
T Consensus 6 kV~~~~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tLp~nT~l~~l 70 (78)
T cd01615 6 KVCDSDRSRKKGVAA-SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTLPDNTVLMLL 70 (78)
T ss_pred EEecCCCCeeEEEEc-CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcCCCCcEEEEE
Confidence 4454432 3334433 3899999999999999655444 44578888777655555556655554
No 140
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=35.87 E-value=1.6e+02 Score=20.83 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=37.5
Q ss_pred cceeEEE--eeCCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE
Q psy2142 38 FDVAVIT--MIENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLI 91 (168)
Q Consensus 38 ~~~~~~~--~~~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li 91 (168)
++++.++ +....++|+|.+.. +..+. ....++..|++.|+...+++..+..++
T Consensus 18 agis~IeI~Rt~~~i~I~I~tarPg~vIG-~~G~~i~~L~~~L~k~~~~~~~~i~v~ 73 (81)
T cd02413 18 DGYSGVEVRVTPTRTEIIIRATRTQNVLG-EKGRRIRELTSLVQKRFNFPEGSVELY 73 (81)
T ss_pred CCeeeEEEEEcCCeEEEEEEeCCCceEEC-CCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 3444443 33566888888775 34444 556789999999999999988776664
No 141
>COG4919 Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]
Probab=35.78 E-value=3 Score=27.80 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCccc-cchhHHHhhhhhhccchhhhhceecceeeEeee
Q psy2142 119 GGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQ 156 (168)
Q Consensus 119 GGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~ 156 (168)
.|||. ||||...++||+ -.-|.+-|..|..|.+.+.+
T Consensus 10 AGKVR~QTPkipaK~kkn-~~PR~rNr~~Y~~Rv~ka~s 47 (54)
T COG4919 10 AGKVRKQTPKIPAKQKKN-YPPRLRNRLKYQVRVEKAAS 47 (54)
T ss_pred ccchhccCCCCCcccccc-CChhHHHHHHHHHHHHHHHh
Confidence 36776 999987655433 33566667788888776654
No 142
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=35.59 E-value=70 Score=23.07 Aligned_cols=63 Identities=10% Similarity=0.055 Sum_probs=41.3
Q ss_pred EEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCC--CCeEEEEcCeecCCCCChhhhcCCccceEE
Q psy2142 52 IIVRGQSN-YVLECQQNETVSHLKNKVASLEKVAL--EDFSLICSGKTLTDDLSISDLESGSIEIFV 115 (168)
Q Consensus 52 IfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~--~~Q~Liy~GK~LeD~~tL~dy~~sTL~Lvv 115 (168)
+.|++.+. .-.-|-. .+..+|+.+..+..+++. ....|.-.|..++|+.-...+...|..+++
T Consensus 5 fkV~~~~r~~k~GV~A-~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~LpdnT~lm~L 70 (78)
T cd06539 5 FRVSNHDRSSRRGVMA-SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMVL 70 (78)
T ss_pred EEEecCCCCceEEEEe-cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhCCCCCEEEEE
Confidence 34555432 2233332 389999999999999974 455667788888887666666655555544
No 143
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=33.41 E-value=56 Score=23.50 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=26.2
Q ss_pred EEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC
Q psy2142 62 LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT 98 (168)
Q Consensus 62 leV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le 98 (168)
|+|+++.|..+|-+.+.+...+....=.|..+|+.|-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LY 37 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLY 37 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEE
Confidence 6899999999999999988655555555556666553
No 144
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=32.72 E-value=71 Score=23.09 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=42.0
Q ss_pred EEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCC----CCeEEEEcCeecCCCCChhhhcCCccceEE
Q psy2142 52 IIVRGQSN-YVLECQQNETVSHLKNKVASLEKVAL----EDFSLICSGKTLTDDLSISDLESGSIEIFV 115 (168)
Q Consensus 52 IfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~----~~Q~Liy~GK~LeD~~tL~dy~~sTL~Lvv 115 (168)
+.|++.+. .-.-|-. .|..+|+.+..+..+++. ....|.-.|-.++|++-+..+...|..+++
T Consensus 5 fkV~~~~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~l~~L 72 (80)
T cd06536 5 CVVCNVSRQKQHGVAA-SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCLPPNTKFVLL 72 (80)
T ss_pred eEEecCCCCeeEeEEc-CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhCCCCcEEEEE
Confidence 34555532 3333432 389999999999999983 344566688888887666666666666555
No 145
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=31.44 E-value=96 Score=22.32 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=32.3
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeE-EEEcCeec
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFS-LICSGKTL 97 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~-Liy~GK~L 97 (168)
+.+++.|+++.|=.+||+.|+...|+++..-. +++.|+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 45899999999999999999999999886543 44666543
No 146
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=31.19 E-value=15 Score=28.32 Aligned_cols=13 Identities=38% Similarity=0.600 Sum_probs=10.6
Q ss_pred hhhcccceeeecc
Q psy2142 8 RLAHSIELCTWHL 20 (168)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (168)
++|--+|||+||.
T Consensus 57 klaIfVDGcfWHg 69 (117)
T TIGR00632 57 RCVIFIHGCFWHG 69 (117)
T ss_pred CEEEEEccccccc
Confidence 5667789999994
No 147
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=30.77 E-value=87 Score=22.60 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=35.1
Q ss_pred CHHHHHHHHhhhcCCC-CCCeEEEEcCeecCCCCChhhhcCCccceEE
Q psy2142 69 TVSHLKNKVASLEKVA-LEDFSLICSGKTLTDDLSISDLESGSIEIFV 115 (168)
Q Consensus 69 TV~~LK~kI~~~eGIp-~~~Q~Liy~GK~LeD~~tL~dy~~sTL~Lvv 115 (168)
|..+|+.+..+..+++ +....|.-.|-.++|++-...+...|..+++
T Consensus 22 sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tLp~nt~l~vL 69 (79)
T cd06538 22 SLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQALADNTVFMVL 69 (79)
T ss_pred CHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhCCCCcEEEEE
Confidence 8999999999999995 2346666788888887666666666666555
No 148
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=30.69 E-value=58 Score=23.21 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=16.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhh
Q psy2142 60 YVLECQQNETVSHLKNKVASL 80 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~ 80 (168)
.+++|..+.|+.+||+.+-+.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 368999999999999987655
No 149
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=29.43 E-value=80 Score=22.95 Aligned_cols=39 Identities=33% Similarity=0.456 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeE-EEEcCee
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFS-LICSGKT 96 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~-Liy~GK~ 96 (168)
+.+++.|++..|=.++|+.|+...|+++..-. ++..|+.
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 56999999999999999999999999886644 3344443
No 150
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=28.88 E-value=2.3e+02 Score=20.62 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=34.4
Q ss_pred eEEEEEcC-CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe
Q psy2142 50 KRIIVRGQ-SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK 95 (168)
Q Consensus 50 MQIfVR~~-~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK 95 (168)
|+|.|-.. +...+.|+++-+-.+|.++|.+..++. ....|-|.--
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 55555543 458899999999999999999999995 5666666543
No 151
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=28.57 E-value=1.7e+02 Score=27.72 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=44.2
Q ss_pred eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhc--CCCCCCeEEEE----cCee--cCCCCChhhhc---CCccceEE
Q psy2142 50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLE--KVALEDFSLIC----SGKT--LTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~e--GIp~~~Q~Liy----~GK~--LeD~~tL~dy~---~sTL~Lvv 115 (168)
|-|.+|+.+| +-++|.++++.+.|-.+|-.-. +..|++..+-- .|-+ +..++|+.+.| +..|.|..
T Consensus 1 Mi~rfRsk~G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 6678899877 8899999999999988876543 33444433321 1221 34567888888 66666654
No 152
>KOG3224|consensus
Probab=27.68 E-value=66 Score=28.21 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=28.0
Q ss_pred CCCeEEEEcCeec-CCCCChhhhcCCccceEEEecCCc
Q psy2142 85 LEDFSLICSGKTL-TDDLSISDLESGSIEIFVPLLGGK 121 (168)
Q Consensus 85 ~~~Q~Liy~GK~L-eD~~tL~dy~~sTL~LvvrllGGK 121 (168)
..+|.|.|..-+| +|+ |+|.|.|.+++-+|+..|.
T Consensus 162 ~~e~ILFy~eiiLFEDE--LADnGiS~l~VrvRVM~~~ 197 (278)
T KOG3224|consen 162 NREQILFYDEIILFEDE--LADNGISMLDVRVRVMPGH 197 (278)
T ss_pred cccCeeeecceeeehhh--hhhCCceeEEEEEEEeccc
Confidence 3478899999988 554 8999999999888876664
No 153
>KOG0084|consensus
Probab=27.57 E-value=1.2e+02 Score=25.67 Aligned_cols=83 Identities=14% Similarity=0.265 Sum_probs=51.1
Q ss_pred cceeeeccCCcceeeeccCCccccccceeEEEeeCCceEEEE-----------------EcCCc--eEEEEcCCCCHHHH
Q psy2142 13 IELCTWHLNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIV-----------------RGQSN--YVLECQQNETVSHL 73 (168)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~sf~~~~~~~~~~~~~~~MQIfV-----------------R~~~~--~tleV~~s~TV~~L 73 (168)
+--|+|.||.-..+-.=--|-.+-|+-..-+++.-..++|-| |+..+ ++++++..+|-..|
T Consensus 21 GKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v 100 (205)
T KOG0084|consen 21 GKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNV 100 (205)
T ss_pred ChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhH
Confidence 456999999876443333444555655555544444433333 22344 67899999999999
Q ss_pred HHHHhhhcCCCCCC-eEEEEcCe
Q psy2142 74 KNKVASLEKVALED-FSLICSGK 95 (168)
Q Consensus 74 K~kI~~~eGIp~~~-Q~Liy~GK 95 (168)
+.=|.+....+.+. -+|+-+.|
T Consensus 101 ~~Wi~Ei~~~~~~~v~~lLVGNK 123 (205)
T KOG0084|consen 101 KRWIQEIDRYASENVPKLLVGNK 123 (205)
T ss_pred HHHHHHhhhhccCCCCeEEEeec
Confidence 99777776655555 33444444
No 154
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=27.30 E-value=1.2e+02 Score=21.89 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=27.0
Q ss_pred ceEEEEcC--CCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC
Q psy2142 59 NYVLECQQ--NETVSHLKNKVASLEKVALEDFSLICSGKTLTDD 100 (168)
Q Consensus 59 ~~tleV~~--s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~ 100 (168)
...+.+++ ..+..+|++.|+...+++ . |.=|-|+|+
T Consensus 11 ~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~----f~lKYlDde 48 (81)
T cd06396 11 SQSFLVSDSENTTWASVEAMVKVSFGLN--D----IQIKYVDEE 48 (81)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHhCCC--c----ceeEEEcCC
Confidence 35567777 669999999999999998 3 444556554
No 155
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=26.58 E-value=1.2e+02 Score=22.39 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=27.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhh-cCCCCCCeEEE----EcCee
Q psy2142 60 YVLECQQNETVSHLKNKVASL-EKVALEDFSLI----CSGKT 96 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~-eGIp~~~Q~Li----y~GK~ 96 (168)
.++...+++++.++++++.+. ..++.+++.|+ |+|.|
T Consensus 31 ~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 31 GAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 678899999999999998776 45666676665 44555
No 156
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=25.93 E-value=3.2e+02 Score=22.04 Aligned_cols=83 Identities=14% Similarity=0.136 Sum_probs=51.8
Q ss_pred cCCcceeeeccCCccccccceeEEEeeCCceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCC
Q psy2142 20 LNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTD 99 (168)
Q Consensus 20 ~~~~~~~~~~~~~sf~~~~~~~~~~~~~~~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD 99 (168)
+-|-.-+|.+-.+.=+.+.+=..+...-..|.|.|+. +.+-+++...+.+.+|++...+..-.+- =+..|+-+.+
T Consensus 37 ~LPk~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V-GrI~le~~~~~~i~~I~eiC~e~~pF~y----~i~~g~f~r~ 111 (150)
T TIGR03260 37 RLPKKVPYGPARGLPVNHPDRKTIRVKGEDVELRVQV-GRIILELEDEDIVEEIEEICKEMLPFGY----EVRVGKFLRT 111 (150)
T ss_pred CCCCCCCCCcccCCCCCCCcceEEEECCEEEEEEEEE-eEEEEEecCHHHHHHHHHHHHhhCCCce----EeeeeeEeec
Confidence 3344445555555333333433444445556776655 2366788888899999877665543222 2457889999
Q ss_pred CCChhhhc
Q psy2142 100 DLSISDLE 107 (168)
Q Consensus 100 ~~tL~dy~ 107 (168)
..|++||-
T Consensus 112 ~~TvtDY~ 119 (150)
T TIGR03260 112 KPTVTDYI 119 (150)
T ss_pred CCchhhhh
Confidence 99999985
No 157
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=25.68 E-value=1.2e+02 Score=22.04 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=41.2
Q ss_pred EEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCC-CCCeEEEEcCeecCCCCChhhhcCCccceEE
Q psy2142 52 IIVRGQSN-YVLECQQNETVSHLKNKVASLEKVA-LEDFSLICSGKTLTDDLSISDLESGSIEIFV 115 (168)
Q Consensus 52 IfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp-~~~Q~Liy~GK~LeD~~tL~dy~~sTL~Lvv 115 (168)
+.|++.+. .-.-|-. .+..+|+.+..+..+++ +....|.-.|..++|+.-...+...|..+++
T Consensus 5 fkv~~~~r~~kkGV~A-~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tLpdnT~lm~L 69 (81)
T cd06537 5 FRVCDHKRTVRKGLTA-ASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELLEDDTCLMVL 69 (81)
T ss_pred eEEecCCCCeeEeEEc-cCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhCCCCCEEEEE
Confidence 34555532 3333332 38999999999988886 4566667788888887666666555555544
No 158
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=25.19 E-value=1.9e+02 Score=25.44 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=39.7
Q ss_pred EEEEcCCCCHHHHHHHHhhhc--------------C-CCCCCeEEEEcCeecCCCCChhhhc------CCccceEEE
Q psy2142 61 VLECQQNETVSHLKNKVASLE--------------K-VALEDFSLICSGKTLTDDLSISDLE------SGSIEIFVP 116 (168)
Q Consensus 61 tleV~~s~TV~~LK~kI~~~e--------------G-Ip~~~Q~Liy~GK~LeD~~tL~dy~------~sTL~Lvvr 116 (168)
-|.+..---|.-|.+.|.++. . .|.+..-|+|+|+.|+.+.||+... +..|-|..|
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR 327 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYR 327 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEE
Confidence 355555556777777777766 2 4677788999999999999999875 444544444
No 159
>PRK01777 hypothetical protein; Validated
Probab=25.04 E-value=2.8e+02 Score=20.28 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=34.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCC--C-----eEEEEcCeecCCCCChhhhcCCccceEEEe
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALE--D-----FSLICSGKTLTDDLSISDLESGSIEIFVPL 117 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~--~-----Q~Liy~GK~LeD~~tL~dy~~sTL~Lvvrl 117 (168)
..+++.++.||.++=.. .||+.+ + ..+.-.|+...-++.|.+ ++++.+...|
T Consensus 19 ~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~d--GDRVeIyrPL 77 (95)
T PRK01777 19 QRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKLTDVLRD--GDRVEIYRPL 77 (95)
T ss_pred EEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCCCCcCCC--CCEEEEecCC
Confidence 67899999999987664 466555 2 244456777766555544 5666666554
No 160
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=24.56 E-value=1.9e+02 Score=24.38 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=33.1
Q ss_pred ceEEEEEcC-----CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE
Q psy2142 49 MKRIIVRGQ-----SNYVLECQQNETVSHLKNKVASLEKVALEDFSLI 91 (168)
Q Consensus 49 ~MQIfVR~~-----~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li 91 (168)
.+.|.++-. .+|+++++...|-.+|-+.|++..|++|+..+|+
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 467666642 2599999999999999999999999999998886
No 161
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=24.09 E-value=1.5e+02 Score=21.12 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCCh
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLIC-SGKTLTDDLSI 103 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy-~GK~LeD~~tL 103 (168)
.+.+++++..||+++=+ ..|+|..+--+++ +|+.-.=+..+
T Consensus 24 ~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~~~~ 65 (81)
T PF14451_consen 24 PFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFDYRL 65 (81)
T ss_pred ceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCcccC
Confidence 37788999999987754 5799999987775 88777554433
No 162
>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis. They play a role in the methylation reaction of pre-rRNA processing. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases [, ].; GO: 0008168 methyltransferase activity; PDB: 3BBE_B 3BBD_B 3BBH_B 2V3K_A 3OII_B 3OIJ_B 3OIN_A 2V3J_A 3O7B_A.
Probab=23.69 E-value=93 Score=25.88 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=27.1
Q ss_pred CCceEEEEEcCCceEEEEcCCCCH-------HHHHHHHhhhcCCCCC
Q psy2142 47 ENMKRIIVRGQSNYVLECQQNETV-------SHLKNKVASLEKVALE 86 (168)
Q Consensus 47 ~~~MQIfVR~~~~~tleV~~s~TV-------~~LK~kI~~~eGIp~~ 86 (168)
+..+||+|++.++..|+|+|..-| ..|.+++-...-||++
T Consensus 59 ~G~L~VYIhT~~~~lI~V~p~~RiPR~y~rF~gLm~qLL~~~~I~~~ 105 (202)
T PF03587_consen 59 AGKLQVYIHTIDNVLIEVSPQTRIPRNYNRFVGLMEQLLKKGKIPAE 105 (202)
T ss_dssp TT-EEEEEEETTSEEEEE-TT----SSHHHHHHHHHHHHHHSEEEET
T ss_pred CCcEEEEEEecCCEEEEECCCCcCCcCHHHHHHHHHHHHhcCcccCC
Confidence 567999999999999999999855 3455665555556666
No 163
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=23.60 E-value=2.9e+02 Score=19.88 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=40.8
Q ss_pred CCceEEEEEcCC---ceEEEEcCCCCHHHHHHHHhhh--cCCCCC----CeEEEEcCee--cCCCCChhhhc--------
Q psy2142 47 ENMKRIIVRGQS---NYVLECQQNETVSHLKNKVASL--EKVALE----DFSLICSGKT--LTDDLSISDLE-------- 107 (168)
Q Consensus 47 ~~~MQIfVR~~~---~~tleV~~s~TV~~LK~kI~~~--eGIp~~----~Q~Liy~GK~--LeD~~tL~dy~-------- 107 (168)
.+.+.|.|...+ .+++.|+.+.|+.+|-+++-.. .++.+. +..|--.|+. |..+.+|.+|.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 344556665552 3889999999999999887665 233222 5666666653 45667777775
Q ss_pred CCccceEE
Q psy2142 108 SGSIEIFV 115 (168)
Q Consensus 108 ~sTL~Lvv 115 (168)
+..++|++
T Consensus 94 ~~~~~L~L 101 (106)
T PF00794_consen 94 GKDPHLVL 101 (106)
T ss_dssp T--EEEEE
T ss_pred CCCcEEEE
Confidence 45666654
No 164
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=23.45 E-value=1.5e+02 Score=24.36 Aligned_cols=48 Identities=29% Similarity=0.335 Sum_probs=29.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCC---CeEEE--EcCee---cCCCCChhhhc
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALE---DFSLI--CSGKT---LTDDLSISDLE 107 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~---~Q~Li--y~GK~---LeD~~tL~dy~ 107 (168)
+.+-|..+.||++|-+.+....+++.+ ..+|+ ++||. +..+.+|.+.+
T Consensus 36 ~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l~ 91 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSLN 91 (213)
T ss_dssp EEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS-
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhcc
Confidence 788999999999999999999888665 33332 45554 67777787764
No 165
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=22.49 E-value=93 Score=22.32 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhh
Q psy2142 60 YVLECQQNETVSHLKNKVASL 80 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~ 80 (168)
..++|..+.|+.+||+++-+.
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQ 22 (78)
T ss_pred eeEEccccccHHHHHHHHHHH
Confidence 367899999999999998765
No 166
>KOG0086|consensus
Probab=21.96 E-value=1.3e+02 Score=25.02 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=66.9
Q ss_pred hhhhcccceeeeccCCcceeeeccCCccccccceeEEEeeCCc--eEEEEE---------------cCCc--eEEEEcCC
Q psy2142 7 IRLAHSIELCTWHLNPVTSTYYLSKASFGTKFDVAVITMIENM--KRIIVR---------------GQSN--YVLECQQN 67 (168)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~~~~~~~~~~~~~~--MQIfVR---------------~~~~--~tleV~~s 67 (168)
|--|-.+..|+-|+|+-.---|.++--.+.+++..-+..--.. +||.-- +.-+ .++++..-
T Consensus 15 iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsr 94 (214)
T KOG0086|consen 15 IGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR 94 (214)
T ss_pred eccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccch
Confidence 4456778889999999887777777777777775544332333 444432 1223 56899999
Q ss_pred CCHHHHHHHHhhhcCCCCCCeEEEEcCe--ecCCC
Q psy2142 68 ETVSHLKNKVASLEKVALEDFSLICSGK--TLTDD 100 (168)
Q Consensus 68 ~TV~~LK~kI~~~eGIp~~~Q~Liy~GK--~LeD~ 100 (168)
++-..|-.=+...--+.+....++..|. -|+.+
T Consensus 95 dsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 95 DSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred hhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 9999999999988888888888888874 35444
No 167
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.53 E-value=1.8e+02 Score=20.54 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEE
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSL 90 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~L 90 (168)
+.+++.|++..|=.++|+.|+...|+.+..-.-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 458999999999999999999999998876554
No 168
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=21.38 E-value=2.3e+02 Score=21.24 Aligned_cols=33 Identities=6% Similarity=-0.075 Sum_probs=22.8
Q ss_pred EEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCC
Q psy2142 53 IVRGQSN--YVLECQQNETVSHLKNKVASLEKVAL 85 (168)
Q Consensus 53 fVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~ 85 (168)
+|=..+| .+|+|....+-.+|+.++-...|++.
T Consensus 4 ~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 4 RFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 4444444 77999999999999999999999877
No 169
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=21.07 E-value=1.6e+02 Score=21.76 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCC-CCCCeEEE
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKV-ALEDFSLI 91 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGI-p~~~Q~Li 91 (168)
+-||-|.|..|+.+|=+.+++...| .|++..|.
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LF 48 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLF 48 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEE
Confidence 3789999999999999999999887 55555554
Done!