Query psy2142
Match_columns 168
No_of_seqs 151 out of 1057
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 17:07:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_9 RPS31E; ribosome, trans 99.9 2.5E-25 8.6E-30 181.0 -0.6 97 50-156 1-105 (189)
2 3u5c_f 40S ribosomal protein S 99.8 7.9E-23 2.7E-27 160.6 -0.9 108 50-160 1-113 (152)
3 3phx_B Ubiquitin-like protein 99.8 7.6E-21 2.6E-25 131.0 9.1 73 47-119 2-79 (79)
4 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 8.9E-21 3E-25 132.6 9.4 77 47-123 5-86 (87)
5 4fbj_B NEDD8; effector-HOST ta 99.8 5.8E-21 2E-25 135.5 7.0 74 50-123 1-79 (88)
6 3n3k_B Ubiquitin; hydrolase, p 99.8 1.4E-20 4.7E-25 130.4 7.2 76 48-123 2-82 (85)
7 3mtn_B UBA80, ubcep1, ubiquiti 99.8 4E-20 1.4E-24 127.8 8.3 75 48-122 2-81 (85)
8 3dbh_I NEDD8; cell cycle, acti 99.8 3.1E-20 1.1E-24 129.6 7.7 74 47-120 10-88 (88)
9 2uyz_B Small ubiquitin-related 99.8 4.6E-20 1.6E-24 127.0 7.8 72 49-120 3-79 (79)
10 2hj8_A Interferon-induced 17 k 99.8 5E-20 1.7E-24 130.5 8.1 76 48-123 3-83 (88)
11 1ndd_A NEDD8, protein (ubiquit 99.8 6.2E-20 2.1E-24 123.9 8.1 71 50-120 1-76 (76)
12 4hcn_B Polyubiquitin, ubiquiti 99.8 3.5E-20 1.2E-24 133.8 7.1 74 47-120 20-98 (98)
13 2kan_A Uncharacterized protein 99.8 1.1E-19 3.9E-24 131.1 9.1 76 46-121 12-92 (94)
14 1sif_A Ubiquitin; hydrophobic 99.8 5.3E-20 1.8E-24 130.5 7.1 76 48-123 8-88 (88)
15 3plu_A Ubiquitin-like modifier 99.8 1.1E-19 3.6E-24 133.2 8.2 73 42-114 14-91 (93)
16 3a9j_A Ubiquitin; protein comp 99.8 1.7E-19 5.7E-24 121.8 8.2 71 50-120 1-76 (76)
17 1wyw_B Ubiquitin-like protein 99.8 1.6E-19 5.5E-24 130.5 8.5 74 47-120 19-97 (97)
18 2l7r_A Ubiquitin-like protein 99.8 1.1E-19 3.8E-24 130.4 7.5 75 46-120 16-93 (93)
19 1we6_A Splicing factor, putati 99.8 1.2E-19 4E-24 133.9 7.8 78 46-123 24-110 (111)
20 1wy8_A NP95-like ring finger p 99.8 3.9E-19 1.3E-23 124.9 9.8 76 47-122 5-87 (89)
21 3rt3_B Ubiquitin-like protein 99.8 4.1E-19 1.4E-23 136.7 10.7 75 47-121 79-158 (159)
22 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 2.1E-19 7.1E-24 127.9 8.0 74 49-122 1-79 (96)
23 4dwf_A HLA-B-associated transc 99.8 3.7E-19 1.3E-23 125.4 8.4 75 47-121 3-81 (90)
24 1uh6_A Ubiquitin-like 5; beta- 99.8 2.9E-19 1E-23 132.1 7.5 69 47-115 26-99 (100)
25 1wgd_A Homocysteine-responsive 99.8 6E-19 2E-23 125.9 8.2 75 47-121 5-90 (93)
26 2lxa_A Ubiquitin-like protein 99.8 4.9E-19 1.7E-23 127.2 7.5 68 49-116 1-77 (87)
27 1wx8_A Riken cDNA 4931431F19; 99.8 6.9E-19 2.3E-23 125.8 7.9 87 30-121 3-93 (96)
28 3v6c_B Ubiquitin; structural g 99.8 1E-18 3.6E-23 124.0 8.2 72 47-118 15-91 (91)
29 2ojr_A Ubiquitin; lanthide-bin 99.8 2E-18 6.8E-23 127.5 9.4 73 48-120 34-111 (111)
30 3vdz_A Ubiquitin-40S ribosomal 99.8 1.3E-18 4.5E-23 128.8 8.4 73 48-120 34-111 (111)
31 2dzi_A Ubiquitin-like protein 99.8 2.9E-18 9.9E-23 117.6 9.3 72 47-118 5-81 (81)
32 1wgh_A Ubiquitin-like 3, HCG-1 99.8 9.9E-19 3.4E-23 132.1 7.5 76 46-121 13-103 (116)
33 4eew_A Large proline-rich prot 99.8 1.8E-18 6.1E-23 121.5 8.1 71 46-116 14-88 (88)
34 3iz6_Z 40S ribosomal protein S 99.8 1.3E-20 4.5E-25 128.0 -2.9 49 120-168 12-61 (62)
35 2kk8_A Uncharacterized protein 99.8 2.4E-18 8.1E-23 121.8 8.5 70 47-116 8-83 (84)
36 1we7_A SF3A1 protein; structur 99.8 3E-18 1E-22 127.3 9.2 78 46-123 22-114 (115)
37 1yx5_B Ubiquitin; proteasome, 99.8 2.2E-18 7.7E-23 123.8 8.3 74 50-123 1-79 (98)
38 3l0w_B Monoubiquitinated proli 99.8 2.2E-18 7.4E-23 136.6 8.7 72 50-121 1-77 (169)
39 2faz_A Ubiquitin-like containi 99.8 3E-18 1E-22 117.4 8.2 70 48-117 1-77 (78)
40 3u5e_m 60S ribosomal protein L 99.7 8E-20 2.7E-24 138.2 0.2 74 50-123 1-79 (128)
41 3b1l_X E3 ubiquitin-protein li 99.6 8.3E-20 2.8E-24 124.5 0.0 70 50-119 1-75 (76)
42 1se9_A Ubiquitin family; ubiqu 99.7 3.8E-18 1.3E-22 130.9 8.7 75 47-121 14-107 (126)
43 1yqb_A Ubiquilin 3; structural 99.7 5.7E-18 1.9E-22 123.4 8.9 75 47-121 20-98 (100)
44 3q3f_A Ribonuclease/ubiquitin 99.7 3.7E-18 1.3E-22 138.4 7.6 79 44-122 100-183 (189)
45 3u30_A Ubiquitin, linear DI-ub 99.7 6.2E-18 2.1E-22 132.3 8.6 81 40-120 87-172 (172)
46 2fnj_B Transcription elongatio 99.7 6E-18 2.1E-22 128.5 8.0 73 50-123 3-86 (118)
47 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.2E-17 4.2E-22 122.0 9.3 76 47-122 15-94 (106)
48 2wyq_A HHR23A, UV excision rep 99.7 1.4E-17 4.9E-22 115.5 8.8 70 47-116 3-80 (85)
49 3b08_A Polyubiquitin-C, ubiqui 99.7 3.1E-17 1.1E-21 123.7 10.5 79 42-120 69-152 (152)
50 2kdi_A Ubiquitin, vacuolar pro 99.7 1.3E-17 4.5E-22 124.2 8.1 75 47-121 7-86 (114)
51 1uel_A HHR23B, UV excision rep 99.7 3.5E-17 1.2E-21 117.4 8.9 71 50-120 1-79 (95)
52 1wju_A NEDD8 ultimate buster-1 99.7 1.6E-17 5.6E-22 122.8 7.2 71 49-120 17-94 (100)
53 3u30_A Ubiquitin, linear DI-ub 99.7 3E-17 1E-21 128.3 9.1 76 46-121 17-97 (172)
54 3m62_B UV excision repair prot 99.7 1E-17 3.4E-22 123.1 5.9 69 49-117 1-74 (106)
55 1v5o_A 1700011N24RIK protein; 99.7 2.8E-17 9.6E-22 119.6 7.2 76 48-123 6-91 (102)
56 3u5c_e 40S ribosomal protein S 99.7 5.5E-19 1.9E-23 120.4 -1.8 49 119-167 11-61 (63)
57 1j8c_A Ubiquitin-like protein 99.7 4.7E-17 1.6E-21 123.4 8.6 77 47-123 30-110 (125)
58 2gow_A HCG-1 protein, ubiquiti 99.7 2.3E-17 7.7E-22 126.0 6.8 74 48-121 16-104 (125)
59 4a20_A Ubiquitin-like protein 99.7 5.2E-17 1.8E-21 119.0 8.3 70 47-116 17-95 (98)
60 2bwf_A Ubiquitin-like protein 99.7 9E-17 3.1E-21 109.2 8.6 66 50-116 5-75 (77)
61 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.6E-16 5.6E-21 115.7 9.1 73 47-119 23-99 (101)
62 1ttn_A DC-UBP, dendritic cell- 99.7 1.1E-16 3.7E-21 117.2 8.2 74 47-120 21-99 (106)
63 1v2y_A 3300001G02RIK protein; 99.7 3.6E-17 1.2E-21 121.6 5.2 73 48-120 6-99 (105)
64 2kdb_A Homocysteine-responsive 99.7 9.2E-17 3.1E-21 117.8 6.6 68 47-114 21-99 (99)
65 4ajy_B Transcription elongatio 99.7 9.1E-17 3.1E-21 122.1 6.8 71 50-121 1-84 (118)
66 3rt3_B Ubiquitin-like protein 99.6 5.2E-16 1.8E-20 119.3 8.2 68 49-116 2-76 (159)
67 3b08_A Polyubiquitin-C, ubiqui 99.6 7.8E-16 2.7E-20 116.0 8.1 71 50-120 1-76 (152)
68 4dbg_A Ranbp-type and C3HC4-ty 99.6 1.3E-15 4.5E-20 113.4 8.4 67 49-115 24-98 (105)
69 1v5t_A 8430435I17RIK protein; 99.6 1.3E-15 4.5E-20 108.5 6.5 69 47-115 5-81 (90)
70 2xzm_X RPS30E; ribosome, trans 99.6 2.4E-17 8.1E-22 117.2 -2.7 51 118-168 10-64 (80)
71 1wia_A Hypothetical ubiquitin- 99.6 2.2E-15 7.4E-20 107.5 7.3 70 47-119 5-80 (95)
72 1wgg_A Ubiquitin carboxyl-term 99.6 1.3E-15 4.5E-20 110.2 6.2 68 47-115 5-77 (96)
73 1wxv_A BAG-family molecular ch 99.6 3.6E-15 1.2E-19 105.8 8.0 70 47-116 5-84 (92)
74 2daf_A FLJ35834 protein; hypot 99.6 8E-15 2.8E-19 111.4 8.8 73 45-117 11-89 (118)
75 1x1m_A Ubiquitin-like protein 99.6 6.1E-15 2.1E-19 108.2 7.8 72 47-118 10-101 (107)
76 3m63_B Ubiquitin domain-contai 99.6 1.2E-15 4E-20 111.4 3.5 68 49-116 28-99 (101)
77 3ai5_A Yeast enhanced green fl 99.6 8.2E-15 2.8E-19 126.5 9.2 72 47-118 231-307 (307)
78 2dzj_A Synaptic glycoprotein S 99.5 4.9E-15 1.7E-19 106.0 5.9 66 48-113 9-85 (88)
79 1v86_A DNA segment, CHR 7, way 99.5 8.3E-15 2.8E-19 105.5 5.5 68 47-115 15-86 (95)
80 2kd0_A LRR repeats and ubiquit 99.5 2.6E-14 8.8E-19 100.9 7.8 68 48-115 11-82 (85)
81 2dzm_A FAS-associated factor 1 99.5 2.4E-14 8.3E-19 105.3 6.0 70 49-119 8-84 (100)
82 2kjr_A CG11242; UBL, ubiquitin 99.5 6.6E-14 2.3E-18 101.7 8.2 69 46-114 12-93 (95)
83 1oqy_A HHR23A, UV excision rep 99.5 3.6E-14 1.2E-18 125.0 6.4 76 47-122 5-89 (368)
84 1wf9_A NPL4 family protein; be 99.5 6.1E-14 2.1E-18 103.1 5.8 68 48-115 6-93 (107)
85 2io1_B Small ubiquitin-related 99.4 2.5E-13 8.6E-18 98.4 7.5 75 47-121 5-84 (94)
86 4b6w_A Tubulin-specific chaper 99.4 2.9E-13 1E-17 96.5 7.7 56 60-115 17-82 (86)
87 2kj6_A Tubulin folding cofacto 99.4 3.4E-13 1.1E-17 98.5 7.9 68 47-114 12-93 (97)
88 1v6e_A Cytoskeleton-associated 99.4 3.3E-13 1.1E-17 96.8 6.7 67 49-115 7-86 (95)
89 2io0_B Small ubiquitin-related 99.4 2.1E-12 7.2E-17 93.2 8.5 75 47-121 3-82 (91)
90 1t0y_A Tubulin folding cofacto 99.3 3.3E-12 1.1E-16 95.9 7.8 68 48-115 5-85 (122)
91 2kzr_A Ubiquitin thioesterase 99.3 1.2E-12 4E-17 92.3 4.6 66 50-115 1-76 (86)
92 2d07_B Ubiquitin-like protein 99.3 7.7E-12 2.6E-16 90.2 7.9 74 47-120 15-93 (93)
93 3shq_A UBLCP1; phosphatase, hy 99.2 4.8E-12 1.6E-16 109.3 5.8 71 47-117 3-80 (320)
94 1wz0_A Ubiquitin-like protein 99.2 1.5E-11 5E-16 90.9 6.6 75 47-121 22-101 (104)
95 2k8h_A Small ubiquitin protein 99.2 1.9E-11 6.5E-16 91.3 6.7 77 47-123 24-105 (110)
96 2eke_C Ubiquitin-like protein 99.2 4.6E-11 1.6E-15 88.8 7.4 73 47-120 29-106 (106)
97 1wm3_A Ubiquitin-like protein 99.2 6.1E-11 2.1E-15 81.3 7.3 65 50-114 2-71 (72)
98 3a4r_A Nfatc2-interacting prot 99.1 4.1E-10 1.4E-14 78.7 8.5 68 47-114 5-78 (79)
99 1wjn_A Tubulin-folding protein 98.8 1.3E-08 4.5E-13 72.8 8.0 69 47-115 7-91 (97)
100 3kyd_D Small ubiquitin-related 98.6 1.1E-07 3.8E-12 71.6 8.5 72 48-119 39-115 (115)
101 3pge_A SUMO-modified prolifera 98.6 1.3E-07 4.6E-12 77.2 7.9 74 47-121 27-105 (200)
102 4efo_A Serine/threonine-protei 98.5 3.2E-07 1.1E-11 66.9 6.3 48 60-107 26-75 (94)
103 3tix_A Ubiquitin-like protein 98.4 3.8E-07 1.3E-11 74.8 6.2 75 47-122 55-134 (207)
104 2pjh_A Protein NPL4, nuclear p 98.3 2.9E-07 9.8E-12 64.5 3.4 67 48-114 3-78 (80)
105 3v7o_A Minor nucleoprotein VP3 98.3 1E-07 3.5E-12 79.0 0.2 75 46-121 18-97 (227)
106 3uf8_A Ubiquitin-like protein 97.9 3.1E-05 1.1E-09 62.6 7.0 80 42-121 14-97 (209)
107 3ix6_A TS, tsase, thymidylate 97.7 5.5E-06 1.9E-10 72.9 0.0 78 46-123 18-99 (360)
108 2jxx_A Nfatc2-interacting prot 97.6 0.00033 1.1E-08 50.9 8.4 68 47-114 23-96 (97)
109 3goe_A DNA repair protein RAD6 97.6 0.00037 1.3E-08 49.6 8.3 67 49-115 9-81 (82)
110 4da1_A Protein phosphatase 1K, 97.2 6.3E-05 2.1E-09 65.3 0.0 76 48-123 29-108 (389)
111 2al3_A TUG long isoform; TUG U 97.0 0.0017 5.9E-08 46.8 6.3 71 45-115 5-80 (90)
112 2l76_A Nfatc2-interacting prot 96.7 0.0095 3.2E-07 43.4 8.4 68 48-115 20-91 (95)
113 1ryj_A Unknown; beta/alpha pro 96.7 0.012 4.3E-07 39.4 8.2 66 49-120 4-70 (70)
114 2kc2_A Talin-1, F1; FERM, adhe 96.1 0.0071 2.4E-07 46.1 4.8 36 51-86 13-50 (128)
115 3qx1_A FAS-associated factor 1 96.0 0.026 8.9E-07 38.9 6.9 60 47-107 5-71 (84)
116 2l32_A Small archaeal modifier 95.0 0.055 1.9E-06 37.0 5.7 64 50-120 1-66 (74)
117 4e71_A Plexin-B2, MM1; transme 94.6 0.21 7E-06 37.2 8.4 57 59-115 25-109 (111)
118 1oey_A P67-PHOX, neutrophil cy 94.1 0.13 4.3E-06 36.4 6.0 48 48-95 4-51 (83)
119 1wj4_A KIAA0794 protein; UBX d 94.0 0.21 7.1E-06 37.2 7.4 60 47-107 41-107 (124)
120 1vjk_A Molybdopterin convertin 93.6 0.32 1.1E-05 34.1 7.5 71 48-120 8-98 (98)
121 3rpf_C Molybdopterin convertin 93.5 0.26 8.8E-06 32.9 6.5 68 50-120 1-74 (74)
122 2bps_A YUKD protein; ubiquitin 93.5 0.14 4.7E-06 36.0 5.2 58 50-107 5-71 (81)
123 1tyg_B YJBS; alpha beta barrel 93.2 0.17 5.7E-06 35.8 5.4 67 47-120 18-87 (87)
124 2dzk_A UBX domain-containing p 93.1 0.36 1.2E-05 34.9 7.3 61 47-107 11-78 (109)
125 1f0z_A THis protein; ubiquitin 92.8 0.18 6.3E-06 32.9 4.8 62 50-120 1-66 (66)
126 1s3s_G P47 protein; AAA ATPase 91.8 0.66 2.3E-05 34.5 7.4 61 47-107 50-116 (127)
127 2kvr_A Ubiquitin carboxyl-term 90.8 0.22 7.7E-06 37.4 3.9 34 60-93 58-91 (130)
128 2cr5_A Reproduction 8; UBX dom 90.5 1.1 3.9E-05 32.1 7.4 59 48-107 22-86 (109)
129 3ivf_A Talin-1; FERM domain, c 88.3 2.6 9E-05 35.6 9.2 73 50-122 4-97 (371)
130 3po0_A Small archaeal modifier 88.2 2.2 7.7E-05 28.8 7.2 59 60-120 20-89 (89)
131 4e74_A Plexin-A4; RBD, structu 88.1 2.2 7.5E-05 31.8 7.5 33 60-92 29-69 (117)
132 2r2o_A Plexin-B1; effector dom 88.1 2.4 8.3E-05 32.5 7.9 58 59-116 42-128 (138)
133 3jyu_A Ubiquitin carboxyl-term 87.9 1.4 4.9E-05 35.6 7.0 48 60-107 154-208 (231)
134 1rws_A Hypothetical protein PF 87.3 0.26 9E-06 33.3 1.9 57 58-120 21-77 (77)
135 1fm0_D Molybdopterin convertin 86.5 0.94 3.2E-05 30.0 4.3 58 60-120 19-81 (81)
136 4eut_A Serine/threonine-protei 86.5 1.9 6.6E-05 35.9 7.2 48 60-107 324-373 (396)
137 4a3p_A Ubiquitin carboxyl-term 86.0 2.2 7.4E-05 34.1 7.0 61 60-120 142-212 (217)
138 3h6n_A Plexin-D1; structural g 84.7 2.7 9.2E-05 31.8 6.5 57 60-116 19-104 (127)
139 2kl0_A Putative thiamin biosyn 84.6 2.4 8.2E-05 28.5 5.6 64 50-123 1-68 (73)
140 2k5p_A THis protein, thiamine- 83.6 2 6.7E-05 29.3 4.9 64 50-121 1-70 (78)
141 3qa8_A MGC80376 protein; kinas 83.3 1.3 4.6E-05 41.3 5.2 47 60-106 324-371 (676)
142 2l52_A Methanosarcina acetivor 83.1 2.5 8.5E-05 29.6 5.5 69 49-120 3-99 (99)
143 2daj_A KIAA0977 protein, COBL- 83.0 5.7 0.00019 28.4 7.2 69 46-114 7-80 (91)
144 2cu3_A Unknown function protei 81.8 1.7 5.9E-05 28.0 3.9 56 58-120 5-64 (64)
145 3dwg_C 9.5 kDa culture filtrat 81.5 5.8 0.0002 26.9 6.8 70 50-120 1-93 (93)
146 2qjl_A URM1, ubiquitin-related 81.4 7.9 0.00027 26.8 7.6 33 49-81 1-45 (99)
147 2q5w_D Molybdopterin convertin 81.1 1.3 4.3E-05 29.1 3.1 58 60-120 18-77 (77)
148 2ylm_A Ubiquitin carboxyl-term 80.0 1.6 5.5E-05 39.5 4.4 34 60-93 38-71 (530)
149 3hm6_X Plexin-B1; structural g 79.6 7.6 0.00026 36.5 8.7 56 60-115 276-360 (644)
150 2juo_A GA-binding protein alph 79.4 4.1 0.00014 29.0 5.4 56 62-117 7-65 (89)
151 1wgr_A Growth factor receptor- 76.9 4.7 0.00016 29.1 5.2 57 50-106 12-75 (100)
152 2kmm_A Guanosine-3',5'-BIS(dip 76.5 2.1 7.1E-05 27.6 3.0 61 50-114 1-61 (73)
153 3ig3_A Plxna3 protein; plexin 74.6 11 0.00038 35.3 8.3 70 48-117 232-335 (627)
154 2g1e_A Hypothetical protein TA 70.3 9.5 0.00033 25.4 5.3 59 60-120 17-90 (90)
155 4gmv_A RAS-associated and plec 65.1 12 0.00041 31.4 5.9 67 50-116 34-112 (281)
156 3hk0_A Growth factor receptor- 63.6 23 0.00078 29.2 7.3 68 49-116 10-87 (256)
157 1ip9_A BEM1 protein; ubiquitin 62.7 25 0.00086 24.7 6.3 49 48-97 11-60 (85)
158 2c7h_A RBBP6, retinoblastoma-b 58.5 37 0.0013 23.8 6.6 55 48-107 5-63 (86)
159 3ny5_A Serine/threonine-protei 58.1 46 0.0016 23.9 7.1 67 45-112 11-82 (96)
160 1wgk_A Riken cDNA 2900073H19 p 54.1 37 0.0013 24.4 6.3 34 48-81 10-56 (114)
161 2eel_A Cell death activator CI 51.2 19 0.00065 25.6 4.1 67 49-116 9-78 (91)
162 3h9d_A ATG8, microtubule-assoc 51.0 29 0.001 25.5 5.3 60 47-106 29-97 (119)
163 1vd2_A Protein kinase C, IOTA 48.3 67 0.0023 22.4 7.3 47 48-94 5-53 (89)
164 3ivf_A Talin-1; FERM domain, c 47.7 1.2E+02 0.0041 25.2 10.3 50 43-92 79-131 (371)
165 1h4r_A Merlin; FERM, neurofibr 47.7 93 0.0032 25.2 8.5 61 47-107 20-86 (314)
166 2l05_A Serine/threonine-protei 46.4 78 0.0027 22.6 7.2 62 51-112 19-86 (95)
167 2zjd_A Microtubule-associated 46.4 30 0.001 25.9 4.8 60 47-106 33-103 (130)
168 3m95_A Autophagy related prote 46.3 34 0.0011 25.4 5.0 47 60-106 55-102 (125)
169 1rrb_A RAF-1 RBD, RAF proto-on 42.4 97 0.0033 22.6 7.0 62 50-112 21-90 (107)
170 1ef1_A Moesin; membrane, FERM 42.1 38 0.0013 27.1 5.2 57 50-106 2-65 (294)
171 2r2q_A Gamma-aminobutyric acid 40.3 48 0.0016 23.7 5.0 47 60-106 46-93 (110)
172 1wxm_A A-RAF proto-oncogene se 40.2 83 0.0029 22.1 6.0 49 59-107 19-71 (86)
173 3qij_A Protein 4.1; cytoskelet 40.1 34 0.0012 28.0 4.6 60 47-106 15-82 (296)
174 3tca_A Amyloid beta A4 precurs 39.9 56 0.0019 25.6 5.8 46 60-105 47-99 (291)
175 2i1j_A Moesin; FERM, coiled-co 38.7 1.4E+02 0.0047 27.1 8.8 59 48-106 3-68 (575)
176 3rui_B Autophagy-related prote 38.4 54 0.0019 23.9 5.0 60 47-106 28-96 (118)
177 1f2r_I Inhibitor of caspase-ac 36.9 33 0.0011 24.7 3.5 47 69-115 38-88 (100)
178 1eo6_A GATE-16, golgi-associat 36.4 56 0.0019 23.6 4.8 60 47-106 26-94 (117)
179 4gdk_A Ubiquitin-like protein 35.8 61 0.0021 22.5 4.8 47 60-106 22-70 (91)
180 3au4_A Myosin-X; protein-prote 34.4 1.2E+02 0.0039 26.9 7.5 45 48-92 215-263 (555)
181 1v8c_A MOAD related protein; r 30.5 43 0.0015 25.7 3.5 62 60-122 16-89 (168)
182 4dxe_H ACP, acyl carrier prote 29.2 24 0.00082 24.6 1.7 40 60-108 18-58 (101)
183 1wfy_A Regulator of G-protein 28.5 92 0.0031 22.6 4.7 79 31-113 2-85 (104)
184 1c1y_B Proto-onkogene serine/t 27.6 1.5E+02 0.0051 20.3 7.4 53 60-113 14-74 (77)
185 3hvz_A Uncharacterized protein 27.5 62 0.0021 21.7 3.5 29 51-79 7-35 (78)
186 3hui_A Ferredoxin; cytochrome 26.5 60 0.0021 23.6 3.5 38 43-84 15-54 (126)
187 1d4b_A CIDE B, human cell deat 25.9 73 0.0025 23.7 3.9 66 49-116 35-103 (122)
188 3kuz_A Plexin-C1; structural g 25.7 54 0.0018 24.6 3.1 27 60-86 41-71 (126)
189 3r8s_T 50S ribosomal protein L 25.5 87 0.003 21.9 4.1 39 58-96 28-67 (93)
190 1frr_A Ferredoxin I; electron 24.4 95 0.0033 20.5 4.1 26 50-75 2-28 (95)
191 3r3p_A MobIle intron protein; 24.0 17 0.00057 25.9 0.0 15 8-22 41-55 (105)
192 2ns5_A Partitioning-defective 24.0 1.8E+02 0.0063 20.1 8.0 60 48-107 1-71 (85)
193 3o7b_A Ribosome biogenesis NEP 23.8 66 0.0023 26.6 3.6 42 50-91 105-153 (244)
194 1y8x_B Ubiquitin-activating en 23.1 84 0.0029 22.2 3.7 35 59-93 6-40 (98)
195 1ibx_B Chimera of IGG binding 23.1 38 0.0013 26.0 1.9 48 68-115 82-133 (145)
196 2jx5_A GLUB(S27A); ubiquitin, 22.8 1.7E+02 0.0058 19.2 6.3 50 50-103 1-51 (69)
197 3oii_A Essential for mitotic g 22.4 82 0.0028 26.2 4.0 40 47-86 108-154 (253)
198 3ge3_C Toluene-4-monooxygenase 22.3 2E+02 0.007 20.0 6.7 48 60-107 17-71 (84)
199 2i4s_A General secretion pathw 20.5 1.3E+02 0.0044 20.2 4.1 43 78-121 50-97 (105)
200 2zjr_Q 50S ribosomal protein L 20.4 1E+02 0.0035 21.6 3.7 31 58-88 23-53 (95)
201 1cw0_A Protein (DNA mismatch e 20.3 16 0.00056 28.1 -0.7 14 8-21 57-70 (155)
202 2inc_C TOUB protein; DIIRON, 4 20.1 2.3E+02 0.0078 19.7 7.2 48 60-107 15-70 (83)
203 3pvl_A Myosin VIIA isoform 1; 20.1 2.3E+02 0.008 26.0 6.9 46 47-92 261-309 (655)
204 1vsr_A Protein (VSR endonuclea 20.0 17 0.00057 27.4 -0.7 14 8-21 38-51 (136)
No 1
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.89 E-value=2.5e-25 Score=180.98 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=21.7
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCCccc----
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGKLL---- 123 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGGKv~---- 123 (168)
||||||++++ ++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|+ .++||||+++++||++|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs--~~STLhLvlRLrGG~~krkK~ 78 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT--DDVTYYLSLKLLGGKKKKKKK 78 (189)
T ss_dssp -------------------------------------------------------------------------CCCCCCC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc--CCCEEEEEEecCCCccccccc
Confidence 8999999854 889999999999999999999999999999999999999999999 89999999999999886
Q ss_pred --cchhHHHhhhhhhccchhhhhceecceeeEeee
Q psy2142 124 --KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQ 156 (168)
Q Consensus 124 --~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~ 156 (168)
||||++||++||+|..+. +|++|..
T Consensus 79 ~~~tPK~~k~~kKkvkl~~L--------k~y~Vd~ 105 (189)
T 2xzm_9 79 SYTTKKKTKHRHVHTKLGAL--------AFYKLEN 105 (189)
T ss_dssp CCCSSSCCCCCCCCCCCSCC--------CCEEEET
T ss_pred ccCCCccccccccccCCcee--------eEEEECC
Confidence 899999999888777543 5677765
No 2
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.84 E-value=7.9e-23 Score=160.60 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=22.2
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcccc
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLLK 124 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~~ 124 (168)
|||+|++.++ ++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+ +++|+|+++++||..+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgKk- 79 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKK- 79 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCcC-
Confidence 8999999854 889999999999999999999999999999999999999999999998 8999999999999532
Q ss_pred chhHHHhhhhhhccchhhhhceecceeeEeeecCCc
Q psy2142 125 TEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGR 160 (168)
Q Consensus 125 ~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~ 160 (168)
+|+.-..+||+.+|++|+..+...+|+.|... |+
T Consensus 80 -rkKk~~t~Pkk~~~~~~~~~~~~~~~~~~~~~-~~ 113 (152)
T 3u5c_f 80 -RKXXXXXXXXXXXXXXXXXXXXVLSYYKVDAE-GK 113 (152)
T ss_dssp ---CCCCCCCSCCCCCCCCCCCCCCCCSEECSS-SC
T ss_pred -cccccccccccccccccccccceeeEEEEccC-Ce
Confidence 11111245677777778888899999999963 54
No 3
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.84 E-value=7.6e-21 Score=131.02 Aligned_cols=73 Identities=30% Similarity=0.430 Sum_probs=68.7
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG 119 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG 119 (168)
.+.|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+++++++|
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 3579999999865 889999999999999999999999999999999999999999999999 899999999987
No 4
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=8.9e-21 Score=132.60 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=72.7
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
+..|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+++++++||+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 5789999999754 789999999999999999999999999999999999999999999998 78999999999998
Q ss_pred cc
Q psy2142 122 LL 123 (168)
Q Consensus 122 v~ 123 (168)
++
T Consensus 85 ~~ 86 (87)
T 1wh3_A 85 SS 86 (87)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 5
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.83 E-value=5.8e-21 Score=135.53 Aligned_cols=74 Identities=23% Similarity=0.390 Sum_probs=66.5
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL 123 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~ 123 (168)
|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++++||+++
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~ 79 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGL 79 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCC
Confidence 8999998854 889999999999999999999999999999999999999999999998 8999999999999865
No 6
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=1.4e-20 Score=130.40 Aligned_cols=76 Identities=26% Similarity=0.428 Sum_probs=66.6
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL 122 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv 122 (168)
++|+|+||+.++ ++++|++++||.+||++|++..++|+++|+|+|+|++|+|+.+|++|+ +++|+++++++||+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g 81 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGG 81 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC----
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 579999999864 889999999999999999999999999999999999999999999998 899999999999975
Q ss_pred c
Q psy2142 123 L 123 (168)
Q Consensus 123 ~ 123 (168)
+
T Consensus 82 ~ 82 (85)
T 3n3k_B 82 G 82 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 7
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=4e-20 Score=127.81 Aligned_cols=75 Identities=25% Similarity=0.410 Sum_probs=69.3
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL 122 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv 122 (168)
+.|+|+||..++ ++++|++++||.+||++|++..++|+++|+|+|+|++|+|+.+|++|+ +++|+++++++||+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~g 81 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGG 81 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC--
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCC
Confidence 579999999864 889999999999999999999999999999999999999999999998 899999999999975
No 8
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.81 E-value=3.1e-20 Score=129.59 Aligned_cols=74 Identities=22% Similarity=0.383 Sum_probs=70.3
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
...|+|+||+.++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+++++++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4679999999854 889999999999999999999999999999999999999999999998 8999999999998
No 9
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.81 E-value=4.6e-20 Score=127.05 Aligned_cols=72 Identities=18% Similarity=0.377 Sum_probs=68.1
Q ss_pred ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
.|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.||++|+ +++|+++++++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 59999999865 789999999999999999999999999999999999999999999998 8999999999998
No 10
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.81 E-value=5e-20 Score=130.50 Aligned_cols=76 Identities=30% Similarity=0.401 Sum_probs=65.5
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL 122 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv 122 (168)
.+|+|+||+.++ ++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+ +++|+|++++.||+-
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGLE 82 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC------
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCcc
Confidence 469999998754 889999999999999999999999999999999999999999999998 899999999999985
Q ss_pred c
Q psy2142 123 L 123 (168)
Q Consensus 123 ~ 123 (168)
|
T Consensus 83 ~ 83 (88)
T 2hj8_A 83 H 83 (88)
T ss_dssp -
T ss_pred c
Confidence 5
No 11
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.81 E-value=6.2e-20 Score=123.92 Aligned_cols=71 Identities=23% Similarity=0.413 Sum_probs=66.2
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
|+|+||+.++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999754 789999999999999999999999999999999999999999999998 8999999999998
No 12
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.5e-20 Score=133.81 Aligned_cols=74 Identities=26% Similarity=0.464 Sum_probs=69.2
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
...|+|+||+.++ +.++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 5679999998864 889999999999999999999999999999999999999999999998 8899999999998
No 13
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.80 E-value=1.1e-19 Score=131.10 Aligned_cols=76 Identities=25% Similarity=0.393 Sum_probs=71.7
Q ss_pred eCCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CChhhhc---CCccceEEEecCC
Q psy2142 46 IENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD-LSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 46 ~~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~-~tL~dy~---~sTL~LvvrllGG 120 (168)
....|+|+||+.+ .++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+ .+|++|+ +++|+|+++++||
T Consensus 12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 3577999999987 488999999999999999999999999999999999999999 9999998 8999999999999
Q ss_pred c
Q psy2142 121 K 121 (168)
Q Consensus 121 K 121 (168)
+
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 6
No 14
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=5.3e-20 Score=130.54 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=63.7
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL 122 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv 122 (168)
..|||+|++.++ ++++|++++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+++++++||+.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 579999999865 789999999999999999999999999999999999999999999998 899999999999986
Q ss_pred c
Q psy2142 123 L 123 (168)
Q Consensus 123 ~ 123 (168)
+
T Consensus 88 ~ 88 (88)
T 1sif_A 88 D 88 (88)
T ss_dssp -
T ss_pred C
Confidence 3
No 15
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=1.1e-19 Score=133.19 Aligned_cols=73 Identities=18% Similarity=0.346 Sum_probs=63.8
Q ss_pred EEEeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142 42 VITMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 42 ~~~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
++.-.+.+||||||+..+ ++|+|+|++||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+ ++||+|.
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 344558999999999854 889999999999999999999999999999999999999999999999 8899875
No 16
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.80 E-value=1.7e-19 Score=121.79 Aligned_cols=71 Identities=27% Similarity=0.488 Sum_probs=68.0
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
|+|+||+.++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999754 889999999999999999999999999999999999999999999998 8999999999998
No 17
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.80 E-value=1.6e-19 Score=130.49 Aligned_cols=74 Identities=18% Similarity=0.367 Sum_probs=70.4
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
...|+|+||+.++ ++++|.+++||.+||++|++.+|||+++|+|+|+|++|+|+.||++|+ +++|+|+++++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 4669999999865 889999999999999999999999999999999999999999999998 8999999999998
No 18
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=130.42 Aligned_cols=75 Identities=31% Similarity=0.437 Sum_probs=68.3
Q ss_pred eCCceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 46 IENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 46 ~~~~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
....|+|+||+...++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++++||
T Consensus 16 ~~~~m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 35679999999555899999999999999999999999999999999999999999999998 8999999999998
No 19
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.79 E-value=1.2e-19 Score=133.94 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=73.3
Q ss_pred eCCceEEEEEcC---Cc--eEEEEcC-CCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142 46 IENMKRIIVRGQ---SN--YVLECQQ-NETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 46 ~~~~MQIfVR~~---~~--~tleV~~-s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
.+..|+|+|+++ ++ ++++|++ ++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+ +++|+|+++
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 467899999998 43 8899998 99999999999999999999999999999999999999998 899999999
Q ss_pred ecCCccc
Q psy2142 117 LLGGKLL 123 (168)
Q Consensus 117 llGGKv~ 123 (168)
++||++|
T Consensus 104 ~~GGk~h 110 (111)
T 1we6_A 104 ERSGPSS 110 (111)
T ss_dssp SCCSSCC
T ss_pred cCCCCCC
Confidence 9999987
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=3.9e-19 Score=124.90 Aligned_cols=76 Identities=22% Similarity=0.290 Sum_probs=70.3
Q ss_pred CCceEEEEEcCC---ceEE-EEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142 47 ENMKRIIVRGQS---NYVL-ECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG 119 (168)
Q Consensus 47 ~~~MQIfVR~~~---~~tl-eV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG 119 (168)
..+|+|+||..+ .+++ +|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++++|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 467999999864 4889 599999999999999999999999999999999999999999998 899999999999
Q ss_pred Ccc
Q psy2142 120 GKL 122 (168)
Q Consensus 120 GKv 122 (168)
|+.
T Consensus 85 G~~ 87 (89)
T 1wy8_A 85 GPS 87 (89)
T ss_dssp SSC
T ss_pred CCC
Confidence 963
No 21
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.79 E-value=4.1e-19 Score=136.74 Aligned_cols=75 Identities=31% Similarity=0.443 Sum_probs=69.2
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
+..|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ ++||||+++++||.
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 7889999999854 889999999999999999999999999999999999999999999998 89999999999995
No 22
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.79 E-value=2.1e-19 Score=127.92 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=67.5
Q ss_pred ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL 122 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv 122 (168)
.|+|+||+.++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++++||..
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 49999999864 889999999999999999999999999999999999999999999998 899999999999964
No 23
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.78 E-value=3.7e-19 Score=125.44 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=68.8
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc--CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE--SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~--~sTL~LvvrllGGK 121 (168)
+.+|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+ +++|||++++.++.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCTTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCCCCcEEEEEecCCCCC
Confidence 4679999999854 889999999999999999999999999999999999999999999999 89999999987753
No 24
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=2.9e-19 Score=132.15 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=64.1
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
+.+|+||||+..+ ++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.||++|+ ++||+|+.
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 5679999999854 899999999999999999999999999999999999999999999998 78888863
No 25
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=6e-19 Score=125.87 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=68.3
Q ss_pred CCceEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhhc--CCCCCCeEEEEcCeecCCCCChhhh--c---CCccceEE
Q psy2142 47 ENMKRIIVRGQSN----YVLECQQNETVSHLKNKVASLE--KVALEDFSLICSGKTLTDDLSISDL--E---SGSIEIFV 115 (168)
Q Consensus 47 ~~~MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~e--GIp~~~Q~Liy~GK~LeD~~tL~dy--~---~sTL~Lvv 115 (168)
...|+|+||+.++ ++|+|++++||.+||++|++.+ |+|+++|+|+|+|++|+|+.+|++| + +++|||++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 4579999999754 5566779999999999999998 9999999999999999999999999 6 78999999
Q ss_pred EecCCc
Q psy2142 116 PLLGGK 121 (168)
Q Consensus 116 rllGGK 121 (168)
+++||+
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 999986
No 26
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.9e-19 Score=127.19 Aligned_cols=68 Identities=21% Similarity=0.463 Sum_probs=61.5
Q ss_pred ceEEEEEcCCc--eEEEEc--CCCCHHHHHHHH-hhhcCCCCCCeEEEEcCeecCCCCChhhhc----CCccceEEE
Q psy2142 49 MKRIIVRGQSN--YVLECQ--QNETVSHLKNKV-ASLEKVALEDFSLICSGKTLTDDLSISDLE----SGSIEIFVP 116 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~--~s~TV~~LK~kI-~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----~sTL~Lvvr 116 (168)
+||||||+.++ ++|+|+ +++||.+||++| ++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 59999999865 777765 999999999999 999999999999999999999999999998 477877764
No 27
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=6.9e-19 Score=125.83 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=76.0
Q ss_pred cCCccccccceeEEEeeCCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc-
Q psy2142 30 SKASFGTKFDVAVITMIENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE- 107 (168)
Q Consensus 30 ~~~sf~~~~~~~~~~~~~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~- 107 (168)
|+|+-+++.+.. +..|+|+||... .++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+
T Consensus 3 ~~~~~~~~~~~~-----~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi 77 (96)
T 1wx8_A 3 SGSSGVSGREPS-----SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGI 77 (96)
T ss_dssp CCCCCCCCSCCC-----SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTC
T ss_pred CCCccccCCCCC-----CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCC
Confidence 344445444443 578999999973 3889999999999999999999999999999999999999999999998
Q ss_pred --CCccceEEEecCCc
Q psy2142 108 --SGSIEIFVPLLGGK 121 (168)
Q Consensus 108 --~sTL~LvvrllGGK 121 (168)
+++|||++++.||+
T Consensus 78 ~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 78 LDGSTVHVVVRSHSGP 93 (96)
T ss_dssp CTTEEEECCBCCSSCS
T ss_pred CCCCEEEEEEeCCCCC
Confidence 78999999999985
No 28
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.77 E-value=1e-18 Score=123.97 Aligned_cols=72 Identities=24% Similarity=0.407 Sum_probs=67.6
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL 118 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll 118 (168)
+..|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++++
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 5679999998865 889999999999999999999999999999999999999999999998 89999999874
No 29
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=127.46 Aligned_cols=73 Identities=26% Similarity=0.458 Sum_probs=68.7
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
..|+|+||..++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 579999999754 889999999999999999999999999999999999999999999998 8999999999998
No 30
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.76 E-value=1.3e-18 Score=128.76 Aligned_cols=73 Identities=26% Similarity=0.458 Sum_probs=68.7
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
..|+|+||+.++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 469999998864 889999999999999999999999999999999999999999999998 8999999999998
No 31
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=117.63 Aligned_cols=72 Identities=25% Similarity=0.360 Sum_probs=66.7
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL 118 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll 118 (168)
+..|+|+||..++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+++++++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 5679999998754 789999999999999999999999999999999999999999999998 88999998763
No 32
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=9.9e-19 Score=132.11 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=67.3
Q ss_pred eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhh------hcCC--CCCCeEEEEcCeecCCCCChhhhc---C--Cc
Q psy2142 46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKVAS------LEKV--ALEDFSLICSGKTLTDDLSISDLE---S--GS 110 (168)
Q Consensus 46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~------~eGI--p~~~Q~Liy~GK~LeD~~tL~dy~---~--sT 110 (168)
.+..|+|+||+..+ ++|+|++++||.+||++|++ .+|+ |+++|+|||+||+|+|+.||++|+ + +|
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 36779999998754 89999999999999999998 6785 699999999999999999999998 3 58
Q ss_pred cceEEEecCCc
Q psy2142 111 IEIFVPLLGGK 121 (168)
Q Consensus 111 L~LvvrllGGK 121 (168)
|||++++.+..
T Consensus 93 lhLvlr~~~~~ 103 (116)
T 1wgh_A 93 MHLVARETLPE 103 (116)
T ss_dssp EEEEECSSCSS
T ss_pred EEEEccCCCCC
Confidence 99999887653
No 33
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=121.49 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=65.5
Q ss_pred eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc--CCccceEEE
Q psy2142 46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE--SGSIEIFVP 116 (168)
Q Consensus 46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~--~sTL~Lvvr 116 (168)
.+..|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|||++|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~g~~i~lv~R 88 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVER 88 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCTTEEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCCCCcEEEEEEC
Confidence 35779999999854 789999999999999999999999999999999999999999999999 889999875
No 34
>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.76 E-value=1.3e-20 Score=128.00 Aligned_cols=49 Identities=57% Similarity=0.939 Sum_probs=46.2
Q ss_pred Cccc-cchhHHHhhhhhhccchhhhhceecceeeEeeecCCccCCCCCCC
Q psy2142 120 GKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168 (168)
Q Consensus 120 GKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~~~~~~~~~ 168 (168)
|||. |||||+++||+|+++||||+|+|||+||+||+++||+|++||+|+
T Consensus 12 GKVR~QTPKV~kqeKkk~~~gRak~R~~YnrRfvnv~~~~g~kr~~n~n~ 61 (62)
T 3iz6_Z 12 GKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 61 (62)
T ss_dssp HTTCCCCSSSSCCHHHHHHHHHHHHHHCCCCCCSCHHHHHHTTTCCCCCC
T ss_pred ccccCCCCCcchhhhccCCchHHHHHHHhhhhhhhcccccCCccCCCCCC
Confidence 5666 999999999999999999999999999999999999999999985
No 35
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=2.4e-18 Score=121.83 Aligned_cols=70 Identities=20% Similarity=0.401 Sum_probs=65.5
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCee-cCCCCChhhhc---CCccceEEE
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKT-LTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~-LeD~~tL~dy~---~sTL~Lvvr 116 (168)
-+-|+||||+..+ ++++|++++||.+||++|++.+|+|+++|+|+|+|++ |+|+.+|++|+ +++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 3579999999865 8899999999999999999999999999999999999 99999999998 899999875
No 36
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.75 E-value=3e-18 Score=127.26 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=72.4
Q ss_pred eCCceEEEEEcCC------------ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCc
Q psy2142 46 IENMKRIIVRGQS------------NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGS 110 (168)
Q Consensus 46 ~~~~MQIfVR~~~------------~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sT 110 (168)
.+..++|.|+.++ .++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+ +++
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV 101 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence 4578999999864 3789999999999999999999999999999999999999999999998 899
Q ss_pred cceEEEecCCccc
Q psy2142 111 IEIFVPLLGGKLL 123 (168)
Q Consensus 111 L~LvvrllGGKv~ 123 (168)
|+|+++++||++|
T Consensus 102 i~lv~rl~GGk~~ 114 (115)
T 1we7_A 102 IHLALKERSGPSS 114 (115)
T ss_dssp EEEEECCCSCCSC
T ss_pred EEEEEEcCCCCCC
Confidence 9999999999875
No 37
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.75 E-value=2.2e-18 Score=123.76 Aligned_cols=74 Identities=26% Similarity=0.452 Sum_probs=68.1
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL 123 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~ 123 (168)
|+|+||+.++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+++++++||+.-
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 8999999754 889999999999999999999999999999999999999999999998 8999999999998744
No 38
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.75 E-value=2.2e-18 Score=136.57 Aligned_cols=72 Identities=26% Similarity=0.485 Sum_probs=67.8
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
|||+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|||+++++||+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 8999999875 889999999999999999999999999999999999999999999998 89999999999996
No 39
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=3e-18 Score=117.43 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=64.6
Q ss_pred CceEEEEEcCCc---eEEE-EcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 48 NMKRIIVRGQSN---YVLE-CQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 48 ~~MQIfVR~~~~---~tle-V~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
..|+|+||+.++ ++++ |++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|++++++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 369999998754 4899 99999999999999999999999999999999999999999998 8999999875
No 40
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.75 E-value=8e-20 Score=138.22 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=2.6
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL 123 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~ 123 (168)
|||+|++.++ ++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+ +++|+|+++++||+++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~ 79 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIE 79 (128)
T ss_dssp ----------------------------------------------------------------------------CCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCCC
Confidence 8999999864 889999999999999999999999999999999999999999999998 8999999999999988
No 41
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.60 E-value=8.3e-20 Score=124.49 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=66.8
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG 119 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG 119 (168)
|||+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+++++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 8999999865 789999999999999999999999999999999999999999999998 899999999987
No 42
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.74 E-value=3.8e-18 Score=130.90 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=68.2
Q ss_pred CCceEEEEEcCCc--e-EEEEcCCCCHHHHHHHH-----hhhcCCCC--CCeEEEEcCeecCCCCChhhhc---C-----
Q psy2142 47 ENMKRIIVRGQSN--Y-VLECQQNETVSHLKNKV-----ASLEKVAL--EDFSLICSGKTLTDDLSISDLE---S----- 108 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~-tleV~~s~TV~~LK~kI-----~~~eGIp~--~~Q~Liy~GK~LeD~~tL~dy~---~----- 108 (168)
+..|+|+||+.+| + ++++++++||.+||++| ++.+|||+ ++|+|||+||+|+|+.||++|+ +
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 5779999999976 5 68999999999999999 56789997 8999999999999999999998 4
Q ss_pred -CccceEEEecCCc
Q psy2142 109 -GSIEIFVPLLGGK 121 (168)
Q Consensus 109 -sTL~LvvrllGGK 121 (168)
+|+||+++++||+
T Consensus 94 v~tmhlVlrl~g~~ 107 (126)
T 1se9_A 94 VTTMHVIIQAPVTE 107 (126)
T ss_dssp CEEEEEEECCCSSC
T ss_pred cEEEEEEeccCCcc
Confidence 6899999999985
No 43
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=5.7e-18 Score=123.40 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=70.6
Q ss_pred CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
+..|+|+||..++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|++++.||.
T Consensus 20 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 20 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp TTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred CCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 6789999999865 889999999999999999999999999999999999999999999998 89999999998873
No 44
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.73 E-value=3.7e-18 Score=138.42 Aligned_cols=79 Identities=25% Similarity=0.402 Sum_probs=72.5
Q ss_pred EeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142 44 TMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL 118 (168)
Q Consensus 44 ~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll 118 (168)
+.--..|||+||+.++ ++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+ +++|+|+++++
T Consensus 100 T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrlr 179 (189)
T 3q3f_A 100 TTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 179 (189)
T ss_dssp ESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCC
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence 3334569999999864 889999999999999999999999999999999999999999999998 89999999999
Q ss_pred CCcc
Q psy2142 119 GGKL 122 (168)
Q Consensus 119 GGKv 122 (168)
||+.
T Consensus 180 GG~~ 183 (189)
T 3q3f_A 180 GGGQ 183 (189)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 9963
No 45
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.73 E-value=6.2e-18 Score=132.27 Aligned_cols=81 Identities=23% Similarity=0.441 Sum_probs=70.0
Q ss_pred eeEEEeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142 40 VAVITMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 40 ~~~~~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
+.++......|+|+||+.++ ++++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+.+|++|+ ++||||+
T Consensus 87 l~l~~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 87 LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp EEEEECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEEC
T ss_pred eeeeecccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEE
Confidence 44445567899999998865 889999999999999999999999999999999999999999999998 8999999
Q ss_pred EEecCC
Q psy2142 115 VPLLGG 120 (168)
Q Consensus 115 vrllGG 120 (168)
++++||
T Consensus 167 ~rlrgG 172 (172)
T 3u30_A 167 LRLRGG 172 (172)
T ss_dssp C-----
T ss_pred EecCCC
Confidence 999998
No 46
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.73 E-value=6e-18 Score=128.48 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=65.0
Q ss_pred eEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc-C---------CccceEEEec
Q psy2142 50 KRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE-S---------GSIEIFVPLL 118 (168)
Q Consensus 50 MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~-~---------sTL~Lvvrll 118 (168)
|+|+|+..+ +++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.||++|+ . +||||+++ .
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr-~ 81 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-A 81 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-S
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-C
Confidence 666666665 4899999999999999999999999999999999999999999999998 3 69999999 7
Q ss_pred CCccc
Q psy2142 119 GGKLL 123 (168)
Q Consensus 119 GGKv~ 123 (168)
||...
T Consensus 82 ~g~fe 86 (118)
T 2fnj_B 82 DDTFE 86 (118)
T ss_dssp SSCBC
T ss_pred CCcee
Confidence 77533
No 47
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.2e-17 Score=121.98 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=71.4
Q ss_pred CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142 47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL 122 (168)
Q Consensus 47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv 122 (168)
+.+|+|+||..++ +.++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+ +++|+|++++.||+.
T Consensus 15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAM 94 (106)
T ss_dssp SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSC
T ss_pred CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCC
Confidence 5679999999864 889999999999999999999999999999999999999999999998 789999999999874
No 48
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.73 E-value=1.4e-17 Score=115.51 Aligned_cols=70 Identities=24% Similarity=0.399 Sum_probs=64.2
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASL---EKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~---eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
+.+|+|+||+.++ ++++|++++||.+||++|++. +|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 4689999999754 889999999999999999997 899999999999999999999999998 789998874
No 49
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.72 E-value=3.1e-17 Score=123.73 Aligned_cols=79 Identities=24% Similarity=0.447 Sum_probs=71.9
Q ss_pred EEEeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142 42 VITMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 42 ~~~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
........|+|+|+..++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++
T Consensus 69 l~~~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 69 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp EEECCTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEeecccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 334446789999998865 889999999999999999999999999999999999999999999998 899999999
Q ss_pred ecCC
Q psy2142 117 LLGG 120 (168)
Q Consensus 117 llGG 120 (168)
++||
T Consensus 149 ~~GG 152 (152)
T 3b08_A 149 LRGG 152 (152)
T ss_dssp CCC-
T ss_pred cCCC
Confidence 9998
No 50
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-17 Score=124.19 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=70.8
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
-.+.||+|+..++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++++||+
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 3578999999875 889999999999999999999999999999999999999999999998 89999999999996
No 51
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.5e-17 Score=117.40 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=65.2
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASL---EKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~---eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
|+|+||+.++ ++++|++++||.+||++|++. +|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++...|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA 79 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence 8999999754 889999999999999999998 899999999999999999999999998 8899998876544
No 52
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.6e-17 Score=122.77 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=62.1
Q ss_pred ceEEEEEcC----CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 49 MKRIIVRGQ----SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 49 ~MQIfVR~~----~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
.++|++... ..++|+|++++||.+||++|++.+|+|+++|+|||+||+|+|+.||++|+ +++| ++++++|.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 345555542 24899999999999999999999999999999999999999999999999 7899 78888774
No 53
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=128.35 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=70.0
Q ss_pred eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
.+..|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|++++.||
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 36789999998865 889999999999999999999999999999999999999999999998 8999999999887
Q ss_pred c
Q psy2142 121 K 121 (168)
Q Consensus 121 K 121 (168)
.
T Consensus 97 ~ 97 (172)
T 3u30_A 97 M 97 (172)
T ss_dssp E
T ss_pred c
Confidence 3
No 54
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1e-17 Score=123.08 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=62.9
Q ss_pred ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
+|+|+||+.++ ++|+|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|+++.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 59999999754 889999999999999999999999999999999999999999999998 7899998764
No 55
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=2.8e-17 Score=119.64 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=69.0
Q ss_pred CceEEEEEcC------CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CChhhhc---CCccceEEEe
Q psy2142 48 NMKRIIVRGQ------SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD-LSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 48 ~~MQIfVR~~------~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~-~tL~dy~---~sTL~Lvvrl 117 (168)
.+|+|+|+.. ..++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+ .+|++|+ +++|+|+.++
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 5699999985 2478999999999999999999999999999999999999988 6899998 7899999999
Q ss_pred cCCccc
Q psy2142 118 LGGKLL 123 (168)
Q Consensus 118 lGGKv~ 123 (168)
.||-..
T Consensus 86 ~gg~~~ 91 (102)
T 1v5o_A 86 NVGLRT 91 (102)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 998533
No 56
>3u5c_e 40S ribosomal protein S30-A, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Z* 3j16_E 3u5g_e
Probab=99.69 E-value=5.5e-19 Score=120.44 Aligned_cols=49 Identities=49% Similarity=0.722 Sum_probs=44.6
Q ss_pred CCccc-cchhHHHhhhhhhccchhhhhceecceeeEeeecCCc-cCCCCCC
Q psy2142 119 GGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGR-RRGPNAN 167 (168)
Q Consensus 119 GGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~-~~~~~~~ 167 (168)
.|||. |||||+|+||+|+++||||+|++||+||+||+++||+ |++||++
T Consensus 11 AGKVR~QTPKV~k~eKkk~~~gRak~R~~YnrRfvnv~~~~gkrk~~pn~~ 61 (63)
T 3u5c_e 11 AGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRRMNPGPS 61 (63)
T ss_dssp TTHHHHHSCCCCCCCCCCCCCTHHHHHHHHHHHHTSCCCCSSSCCSSCCCC
T ss_pred cccccCCCCCCcccccccCCchhHHHHHHhhhhheeecccCCcccCCCCCC
Confidence 45666 9999999999999999999999999999999999984 8899886
No 57
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.7e-17 Score=123.35 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=65.9
Q ss_pred CCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142 47 ENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL 122 (168)
Q Consensus 47 ~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv 122 (168)
...|+|+||..+ .++++|++++||.+||++|++..|||+++|+|+|+|+.|+|+.+|++|+ +++|+|++++.||+.
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~~ 109 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNSS 109 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC------
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCCC
Confidence 467999999973 3889999999999999999999999999999999999999999999998 789999999999975
Q ss_pred c
Q psy2142 123 L 123 (168)
Q Consensus 123 ~ 123 (168)
-
T Consensus 110 ~ 110 (125)
T 1j8c_A 110 S 110 (125)
T ss_dssp -
T ss_pred C
Confidence 4
No 58
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=126.01 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=66.6
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhh------hcCC--CCCCeEEEEcCeecCCCCChhhhc---C--Cccc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVAS------LEKV--ALEDFSLICSGKTLTDDLSISDLE---S--GSIE 112 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~------~eGI--p~~~Q~Liy~GK~LeD~~tL~dy~---~--sTL~ 112 (168)
..|+|+||+..+ ++++|++++||.+||++|++ .+|+ |+++|+|||+||+|+|+.||++|+ + .|+|
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 459999998754 89999999999999999999 7898 499999999999999999999998 2 3799
Q ss_pred eEEEecCCc
Q psy2142 113 IFVPLLGGK 121 (168)
Q Consensus 113 LvvrllGGK 121 (168)
|++++.++.
T Consensus 96 lv~r~~~~~ 104 (125)
T 2gow_A 96 LVARETLPE 104 (125)
T ss_dssp EEECSCCSS
T ss_pred EEecCCCCc
Confidence 999998864
No 59
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.69 E-value=5.2e-17 Score=119.00 Aligned_cols=70 Identities=17% Similarity=0.423 Sum_probs=61.8
Q ss_pred CCceEEEEEcCCc--eEE--EEcCCCCHHHHHHHH-hhhcCCCCCCeEEEEcCeecCCCCChhhhc----CCccceEEE
Q psy2142 47 ENMKRIIVRGQSN--YVL--ECQQNETVSHLKNKV-ASLEKVALEDFSLICSGKTLTDDLSISDLE----SGSIEIFVP 116 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tl--eV~~s~TV~~LK~kI-~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----~sTL~Lvvr 116 (168)
++.|+|+||+.++ +++ +|++++||.+||++| ++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|++.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 5789999999865 666 666999999999999 888999999999999999999999999997 568888764
No 60
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.69 E-value=9e-17 Score=109.17 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=61.7
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
|+|+||. ++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+++.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 9999998 44 889999999999999999999999999999999999999999999998 789998764
No 61
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=115.68 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=67.4
Q ss_pred CCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142 47 ENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG 119 (168)
Q Consensus 47 ~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG 119 (168)
...|+|+||..+ .++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++|+|++++.+
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 567999999974 3889999999999999999999999999999999999999999999998 889999988754
No 62
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.1e-16 Score=117.22 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=67.5
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
...|+|+||+.++ ++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+ +++|+|+++...+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4569999998754 789999999999999999999999999999999999999999999998 8999999876544
No 63
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=3.6e-17 Score=121.63 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=66.4
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCC---------------CCeEEEEcCeecC-CCCChhhhc--
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVAL---------------EDFSLICSGKTLT-DDLSISDLE-- 107 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~---------------~~Q~Liy~GK~Le-D~~tL~dy~-- 107 (168)
..|+|+|++.++ ++|+|++++||.+||++|++.+++|+ ++|+|+|+|++|. |+.||++|+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 459999999865 89999999999999999999999988 4679999999996 669999999
Q ss_pred -CCccceEEEecCC
Q psy2142 108 -SGSIEIFVPLLGG 120 (168)
Q Consensus 108 -~sTL~LvvrllGG 120 (168)
+++|||+.+++|.
T Consensus 86 ~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIKKLGQK 99 (105)
T ss_dssp SSEEEEEEECSCSC
T ss_pred CCCEEEEEehhccC
Confidence 8999999999874
No 64
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.66 E-value=9.2e-17 Score=117.76 Aligned_cols=68 Identities=22% Similarity=0.408 Sum_probs=58.7
Q ss_pred CCceEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhh-cCCC-CCCeEEEEcCeecCCCCChhhh--c---CCccceE
Q psy2142 47 ENMKRIIVRGQSN----YVLECQQNETVSHLKNKVASL-EKVA-LEDFSLICSGKTLTDDLSISDL--E---SGSIEIF 114 (168)
Q Consensus 47 ~~~MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~-eGIp-~~~Q~Liy~GK~LeD~~tL~dy--~---~sTL~Lv 114 (168)
...|+|+||++++ ++|+|++++||.+||++|++. +|+| +++|+|||+|++|+|+.+|++| + ++||||+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4679999999753 588999999999999999985 6766 5999999999999999999999 6 6788874
No 65
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.66 E-value=9.1e-17 Score=122.07 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=63.2
Q ss_pred eEEEEEcC--C-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc----------CCccceEEE
Q psy2142 50 KRIIVRGQ--S-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE----------SGSIEIFVP 116 (168)
Q Consensus 50 MQIfVR~~--~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----------~sTL~Lvvr 116 (168)
|.+||+.. + ++.++|++++||.+||++|++.+|||+++|+|||+|+.|+|+.||++|+ ++||||+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 56677654 3 4778999999999999999999999999999999999999999999998 569999999
Q ss_pred ecCCc
Q psy2142 117 LLGGK 121 (168)
Q Consensus 117 llGGK 121 (168)
. ||.
T Consensus 81 ~-~~~ 84 (118)
T 4ajy_B 81 A-DDT 84 (118)
T ss_dssp C-SSC
T ss_pred c-CCC
Confidence 7 554
No 66
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.63 E-value=5.2e-16 Score=119.35 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=64.1
Q ss_pred ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE-E-cCeecCCCCChhhhc---CCccceEEE
Q psy2142 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI-C-SGKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li-y-~GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
.|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+ | +|++|+|+.+|++|+ +++|+++++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 39999998865 88999999999999999999999999999999 9 899999999999998 899999988
No 67
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.62 E-value=7.8e-16 Score=116.02 Aligned_cols=71 Identities=27% Similarity=0.488 Sum_probs=66.9
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
|+|+||+.++ ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+ +++++++.++.||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 8999998754 889999999999999999999999999999999999999999999998 8999999888776
No 68
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.61 E-value=1.3e-15 Score=113.44 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=62.7
Q ss_pred ceEEEEEcCC----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc----CCccceEE
Q psy2142 49 MKRIIVRGQS----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE----SGSIEIFV 115 (168)
Q Consensus 49 ~MQIfVR~~~----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----~sTL~Lvv 115 (168)
.|+|+|++.. .++++|+|++||++||++|++.+|||+++|+|+|+|+.|+|+.||++|+ ++++||++
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEE
Confidence 4999999975 3789999999999999999999999999999999999999999999998 78999987
No 69
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.60 E-value=1.3e-15 Score=108.47 Aligned_cols=69 Identities=25% Similarity=0.335 Sum_probs=62.1
Q ss_pred CCceEEEEEcCC-ceEE-EEcCCCCHHHHHHHHhhhcCCCCCCeEEE---EcCeecCCCCChhhhc---CCccceEE
Q psy2142 47 ENMKRIIVRGQS-NYVL-ECQQNETVSHLKNKVASLEKVALEDFSLI---CSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 47 ~~~MQIfVR~~~-~~tl-eV~~s~TV~~LK~kI~~~eGIp~~~Q~Li---y~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
+.+|+|+||..+ .++| +|++++||.+||++|++.+|||+++|+|+ |+|++|+|+.+|++|+ +++|+|+.
T Consensus 5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 457999999643 4889 99999999999999999999999999999 9999999999999998 67777764
No 70
>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X
Probab=99.59 E-value=2.4e-17 Score=117.24 Aligned_cols=51 Identities=37% Similarity=0.584 Sum_probs=45.8
Q ss_pred cCCccc-cchhHHHhhhh-hhccchhhhhceecceeeEeee-cCCccCC-CCCCC
Q psy2142 118 LGGKLL-KTEMVEKQEKK-KKKTGRAKRRVQYNRRFVNVVQ-TFGRRRG-PNANS 168 (168)
Q Consensus 118 lGGKv~-~~~k~~k~~k~-k~~~~r~k~~~~y~~~~~~~~~-~~~~~~~-~~~~~ 168 (168)
..|||. |||||+|+||+ |+++|||++|++||+||+|+++ +||+|++ ||+++
T Consensus 10 rAGKVR~QTPKV~kqeKk~K~~~GRak~R~~YnrRfv~~~~~~~gkrk~npn~~~ 64 (80)
T 2xzm_X 10 KAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPNWHA 64 (80)
T ss_dssp TTTHHHHHSCCCCCCCCSSCCCCSHHHHHHHHHHHSSTTTTTSCSSSCCCTTTCS
T ss_pred ccccccccCCCcchhhhcccCCchhHHHHHHHHHhhhhhcccccccccCCCCcch
Confidence 457777 99999999998 8999999999999999999998 8999887 88764
No 71
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=2.2e-15 Score=107.53 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=63.2
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CChhhhc---CCccceEEEecC
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD-LSISDLE---SGSIEIFVPLLG 119 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~-~tL~dy~---~sTL~LvvrllG 119 (168)
+..|+|+||+.++ ++++|++++||.+||++|++.+ +++|+|+|+|++|+|+ .+|++|+ +++|||+++..+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 4679999998754 7899999999999999999887 8999999999999999 9999998 789999887654
No 72
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=1.3e-15 Score=110.21 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=61.3
Q ss_pred CCceEEEEEcCC-ce-EEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 47 ENMKRIIVRGQS-NY-VLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 47 ~~~MQIfVR~~~-~~-tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
..+|+|+||..+ .+ .|+|++++||.+||++|++.+|||+++|+|+|.|++|+|+ +|++|+ +++|+|+.
T Consensus 5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 457999999653 48 5999999999999999999999999999999999999999 999998 77888764
No 73
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.6e-15 Score=105.77 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=62.1
Q ss_pred CCceEEEEEcCC-ceEEEEcCC-----CCHHHHHHHHhhhcCCCCCCeEEEEcCeecCC-CCChhhhc---CCccceEEE
Q psy2142 47 ENMKRIIVRGQS-NYVLECQQN-----ETVSHLKNKVASLEKVALEDFSLICSGKTLTD-DLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 47 ~~~MQIfVR~~~-~~tleV~~s-----~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD-~~tL~dy~---~sTL~Lvvr 116 (168)
+.+|+|+|+..+ .++++|+++ +||.+||++|++..|+|+++|+|+|+|++|+| +.+|++|+ +++|+|+..
T Consensus 5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 467999999864 489999996 99999999999999999999999999999998 56899998 678887753
No 74
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8e-15 Score=111.38 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=65.9
Q ss_pred eeCCceEEEEE-cCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 45 MIENMKRIIVR-GQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 45 ~~~~~MQIfVR-~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
+.++.|.|.|+ .+. .++++++++.||.+||+++++..++|+++|+|+|+||+|+|++||++|+ +.|+||+++-
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 34677888888 543 3999999999999999999999999999999999999999999999999 8999999864
No 75
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=6.1e-15 Score=108.17 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=63.3
Q ss_pred CCceEEEEEcCC-----ceEEE--------EcC-CCCHHHHHHHHhhhc--CCCCCC-eEEEEcCeecCCCCChhhhc--
Q psy2142 47 ENMKRIIVRGQS-----NYVLE--------CQQ-NETVSHLKNKVASLE--KVALED-FSLICSGKTLTDDLSISDLE-- 107 (168)
Q Consensus 47 ~~~MQIfVR~~~-----~~tle--------V~~-s~TV~~LK~kI~~~e--GIp~~~-Q~Liy~GK~LeD~~tL~dy~-- 107 (168)
.+.|+|+||..+ .++|+ |++ ++||.+||++|++.+ |+|+++ |+|+|+|++|+|+.+|++|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 567999999763 47788 445 499999999999999 999999 99999999999999999998
Q ss_pred -CCccceEEEec
Q psy2142 108 -SGSIEIFVPLL 118 (168)
Q Consensus 108 -~sTL~Lvvrll 118 (168)
+++|||+++..
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 78999988653
No 76
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.2e-15 Score=111.39 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=60.7
Q ss_pred ceEEEEEcC-CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142 49 MKRIIVRGQ-SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 49 ~MQIfVR~~-~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
.|+|+||.. ..++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+ +++|+|+++
T Consensus 28 ~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 28 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp -CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 377888863 34889999999999999999999999999999999999999999999998 788888753
No 77
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.56 E-value=8.2e-15 Score=126.52 Aligned_cols=72 Identities=24% Similarity=0.416 Sum_probs=65.5
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL 118 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll 118 (168)
+.+|+|+||+.++ ++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+ +++|+|+++++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 6789999999754 889999999999999999999999999999999999999999999998 89999999874
No 78
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.9e-15 Score=106.01 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=58.0
Q ss_pred CceEEEEEcCCc----eEE-EEcCCCCHHHHHHHHhh-hcCCCCCCeEEEEc--CeecCCCCChhhhc---CCccce
Q psy2142 48 NMKRIIVRGQSN----YVL-ECQQNETVSHLKNKVAS-LEKVALEDFSLICS--GKTLTDDLSISDLE---SGSIEI 113 (168)
Q Consensus 48 ~~MQIfVR~~~~----~tl-eV~~s~TV~~LK~kI~~-~eGIp~~~Q~Liy~--GK~LeD~~tL~dy~---~sTL~L 113 (168)
.+|+|+|++..+ .+| +|+|++||.+||++|++ .+|+||++|+|+|. |++|+|+.||++|+ ++||++
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 469999999854 358 99999999999999999 48999999999987 99999999999998 556554
No 79
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.53 E-value=8.3e-15 Score=105.52 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=60.3
Q ss_pred CCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 47 ENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 47 ~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
+..|+|+|+... .++|+|++++||.+||++|++.+|||+++|+|+|.|++| |+.+|++|+ +++|+|+.
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVG 86 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEe
Confidence 567999999653 488999999999999999999999999999999999999 455999998 67887764
No 80
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=2.6e-14 Score=100.90 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=58.9
Q ss_pred CceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 48 NMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 48 ~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
+.+.+.++..+ .++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+ +++|+|++
T Consensus 11 ~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 11 STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred CcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 44555555443 4889999999999999999999999999999999999999999999998 77887764
No 81
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=105.34 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=61.7
Q ss_pred ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCChhhhc---CCccceEEEecC
Q psy2142 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLIC--SGKTLTDDLSISDLE---SGSIEIFVPLLG 119 (168)
Q Consensus 49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy--~GK~LeD~~tL~dy~---~sTL~LvvrllG 119 (168)
+|++|++...+ ++|+|++++||.+||++|++.+||||++|+|+| +|+ |+|+.+|++|+ +++|+|+++-+-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 68888877643 889999999999999999999999999999997 676 99999999998 789999865544
No 82
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.49 E-value=6.6e-14 Score=101.69 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=60.7
Q ss_pred eCCceEEEEEcCC----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc--Ce---ec-CCCCChhhhc---CCccc
Q psy2142 46 IENMKRIIVRGQS----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICS--GK---TL-TDDLSISDLE---SGSIE 112 (168)
Q Consensus 46 ~~~~MQIfVR~~~----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~--GK---~L-eD~~tL~dy~---~sTL~ 112 (168)
.++.+.|+|+... .+++++++++||++||++|++.+|||+++|+|+|. |+ .| +|+.+|++|+ ++||+
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 4677899999753 37899999999999999999999999999999998 55 45 8999999998 78998
Q ss_pred eE
Q psy2142 113 IF 114 (168)
Q Consensus 113 Lv 114 (168)
|+
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 83
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.47 E-value=3.6e-14 Score=124.95 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=68.6
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhh---hcCCCCCCeEEEEcCeecCCCCChhhhc---CCcc-ceEEEe
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVAS---LEKVALEDFSLICSGKTLTDDLSISDLE---SGSI-EIFVPL 117 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~---~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL-~Lvvrl 117 (168)
...|+|+||+.++ ++|+|++++||.+||++|++ .+|||+++|+|+|+||+|+|+.+|++|+ +++| +++.++
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 5679999999854 88999999999999999999 6789999999999999999999999998 7888 888888
Q ss_pred cCCcc
Q psy2142 118 LGGKL 122 (168)
Q Consensus 118 lGGKv 122 (168)
.||+.
T Consensus 85 ~~~~~ 89 (368)
T 1oqy_A 85 KAGQG 89 (368)
T ss_dssp CSSSC
T ss_pred CCCCC
Confidence 88764
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.46 E-value=6.1e-14 Score=103.07 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=61.8
Q ss_pred CceEEEEEcCCc-eEEEEc-CCCCHHHHHHHHhhhcCCCCCCeEEEEcCe-----------e----cCCCCChhhhc---
Q psy2142 48 NMKRIIVRGQSN-YVLECQ-QNETVSHLKNKVASLEKVALEDFSLICSGK-----------T----LTDDLSISDLE--- 107 (168)
Q Consensus 48 ~~MQIfVR~~~~-~tleV~-~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK-----------~----LeD~~tL~dy~--- 107 (168)
+.|+|+||+.++ +.|+|+ +++||.+||++|++.+|||+++|+|+|.|+ . ++|+.+|++|+
T Consensus 6 ~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 6 SGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred CeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 349999999987 779999 999999999999999999999999999998 4 58899999998
Q ss_pred CCccceEE
Q psy2142 108 SGSIEIFV 115 (168)
Q Consensus 108 ~sTL~Lvv 115 (168)
+++|||+.
T Consensus 86 G~~L~l~~ 93 (107)
T 1wf9_A 86 GSMVYLAY 93 (107)
T ss_dssp TCEEECCC
T ss_pred CCEEEEEe
Confidence 78988875
No 85
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=2.5e-13 Score=98.44 Aligned_cols=75 Identities=16% Similarity=0.332 Sum_probs=70.3
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
...|+|+|++.++ +.+.|.+++++..|++.+++.+|+|+++|+|+|.|+.|.++.|+++|+ +++||+++.++||.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4569999999876 778999999999999999999999999999999999999999999998 89999999999995
No 86
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.43 E-value=2.9e-13 Score=96.54 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=52.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE-------cCeecCCCCChhhhc---CCccceEE
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLIC-------SGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy-------~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
+.+.+++++||.+||++|+..+|||+++|+|+| .|+.|+|+.+|++|+ ++||||+-
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence 578999999999999999999999999999996 699999999999999 89999985
No 87
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.43 E-value=3.4e-13 Score=98.48 Aligned_cols=68 Identities=9% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCceEEEEEcCC----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe---e----cCCCCChhhhc---CCccc
Q psy2142 47 ENMKRIIVRGQS----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK---T----LTDDLSISDLE---SGSIE 112 (168)
Q Consensus 47 ~~~MQIfVR~~~----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK---~----LeD~~tL~dy~---~sTL~ 112 (168)
++.+.|+|+... .+++++++++||++||++|++.+|||+++|+|+|.|+ + ++|+.+|++|+ +++|+
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 456788888642 3889999999999999999999999999999999983 3 48999999998 78998
Q ss_pred eE
Q psy2142 113 IF 114 (168)
Q Consensus 113 Lv 114 (168)
|+
T Consensus 92 lv 93 (97)
T 2kj6_A 92 II 93 (97)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 88
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=3.3e-13 Score=96.81 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=58.7
Q ss_pred ceEEEEEcCC---ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC---ee----cCCCCChhhhc---CCccceEE
Q psy2142 49 MKRIIVRGQS---NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSG---KT----LTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 49 ~MQIfVR~~~---~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G---K~----LeD~~tL~dy~---~sTL~Lvv 115 (168)
.+.|+|+... .+++++++++||.+||++|++.+|||+++|+|+|.| ++ |+|+.+|++|+ +++|||+-
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 4788888654 388999999999999999999999999999999987 54 58999999998 78998864
No 89
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=2.1e-12 Score=93.24 Aligned_cols=75 Identities=16% Similarity=0.332 Sum_probs=70.2
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
...|+|.|++.++ +.+.|.+++++..|++..++..|+|+++++|+|.|+.|.++.|+++|+ +++|++++.+.||.
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 5679999999875 778999999999999999999999999999999999999999999998 88999999999996
No 90
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.32 E-value=3.3e-12 Score=95.86 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=59.8
Q ss_pred CceEEEEEcCC---ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC---ee----cCCCCChhhhc---CCccceE
Q psy2142 48 NMKRIIVRGQS---NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSG---KT----LTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 48 ~~MQIfVR~~~---~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G---K~----LeD~~tL~dy~---~sTL~Lv 114 (168)
..+.|+|+... .+++++++++||++||++|+..+|||+++|+|+|.| +. ++|+.+|++|+ +++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 35888888764 388999999999999999999999999999999987 43 48999999998 7899988
Q ss_pred E
Q psy2142 115 V 115 (168)
Q Consensus 115 v 115 (168)
.
T Consensus 85 d 85 (122)
T 1t0y_A 85 D 85 (122)
T ss_dssp E
T ss_pred e
Confidence 5
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.32 E-value=1.2e-12 Score=92.27 Aligned_cols=66 Identities=14% Similarity=0.267 Sum_probs=58.4
Q ss_pred eEEEEEcCCc-eEEE-EcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC--eecC---CCCChhhhc---CCccceEE
Q psy2142 50 KRIIVRGQSN-YVLE-CQQNETVSHLKNKVASLEKVALEDFSLICSG--KTLT---DDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 50 MQIfVR~~~~-~tle-V~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G--K~Le---D~~tL~dy~---~sTL~Lvv 115 (168)
|+|+||+.+| +.++ +++++||.+||++|++..|||+++|+|+|++ ++|+ |+.+|++|+ +++|+|..
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 8999999987 5687 9999999999999999999999999999974 8884 688999998 67777753
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.29 E-value=7.7e-12 Score=90.23 Aligned_cols=74 Identities=16% Similarity=0.344 Sum_probs=67.1
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
...|+|+|++.++ +.+.|.+++++..|++.+++..|+++++++|+|.|+.|.++.|+++|+ +++||+++.++||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 4579999999876 778999999999999999999999999999999999999999999998 8899999999998
No 93
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.25 E-value=4.8e-12 Score=109.28 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=62.9
Q ss_pred CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE---EcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLI---CSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li---y~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
...|.|.||..+. ++|+|++++||++||++|++.+||||++|+|+ |+|++|+|+.+|++|+ +++|+|+...
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 4678999997643 89999999999999999999999999999999 8999999999999998 7888887543
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=1.5e-11 Score=90.93 Aligned_cols=75 Identities=15% Similarity=0.309 Sum_probs=70.5
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
...|+|+|++.++ +.+.|.+++++..|++.+++..|+++++++|+|.|+.|.++.|+++|+ +++||+++.+.||.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4579999999876 778999999999999999999999999999999999999999999998 88999999999995
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.21 E-value=1.9e-11 Score=91.34 Aligned_cols=77 Identities=10% Similarity=0.212 Sum_probs=69.9
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
...|+|+|++.++ +.+.|.+++++..|++..++..|+|+++|+|+|.|+.|.++.|+++|+ +++|++++.+.||-
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 4569999999865 789999999999999999999999999999999999999999999998 78999999999996
Q ss_pred cc
Q psy2142 122 LL 123 (168)
Q Consensus 122 v~ 123 (168)
-|
T Consensus 104 ~~ 105 (110)
T 2k8h_A 104 EH 105 (110)
T ss_dssp --
T ss_pred cc
Confidence 43
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.18 E-value=4.6e-11 Score=88.76 Aligned_cols=73 Identities=16% Similarity=0.306 Sum_probs=66.0
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
...|+|+|++ ++ +.+.|.+++++..|++..++..|+++++++|+|.|+.|.++.|.++|+ +++|++++.++||
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 4569999999 76 678999999999999999999999999999999999999999999998 8899999999997
No 97
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.18 E-value=6.1e-11 Score=81.28 Aligned_cols=65 Identities=15% Similarity=0.338 Sum_probs=60.9
Q ss_pred eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142 50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
|+|.|++.++ +.+.|.+++++..|++..++..|+|+++++|+|.|+.|.++.|.++|+ +++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7999999866 778999999999999999999999999999999999999999999998 7888875
No 98
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.09 E-value=4.1e-10 Score=78.71 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=62.6
Q ss_pred CCceEEEEEcCCc---eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142 47 ENMKRIIVRGQSN---YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 47 ~~~MQIfVR~~~~---~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
...|+|+|++.++ +.+.|.+++++..|++..++..|+++++++|+|.|+.|.++.|+++|+ +++||+.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4669999999865 578999999999999999999999999999999999999999999998 7888874
No 99
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.82 E-value=1.3e-08 Score=72.81 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=57.5
Q ss_pred CCceEEEEEcC---Cc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC-------eec-CCCCChhhhc---CCc
Q psy2142 47 ENMKRIIVRGQ---SN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG-------KTL-TDDLSISDLE---SGS 110 (168)
Q Consensus 47 ~~~MQIfVR~~---~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G-------K~L-eD~~tL~dy~---~sT 110 (168)
...+.|+|+.. ++ +.+.+.+++||++||.+|+...|+|+..|+|+|.+ ..| +|..+|++|+ +++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 45678888853 33 77899999999999999999999999999999973 235 6678899998 789
Q ss_pred cceEE
Q psy2142 111 IEIFV 115 (168)
Q Consensus 111 L~Lvv 115 (168)
|++..
T Consensus 87 I~V~d 91 (97)
T 1wjn_A 87 LLVRW 91 (97)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 98865
No 100
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.65 E-value=1.1e-07 Score=71.61 Aligned_cols=72 Identities=17% Similarity=0.349 Sum_probs=65.8
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG 119 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG 119 (168)
..++|.|+++++ ..+.|.+++++..|++..+++.|+++.+++++|.|+.|.++.|.++++ +++|++.+.-.|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 568999999876 668999999999999999999999999999999999999999999998 889999886554
No 101
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.3e-07 Score=77.15 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=68.1
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
...++|.|+. ++ ..+.|.+++++..|+...+++.|+|+.+++++|.|+.|.++.|.++++ +++|+++..++||.
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 4558999975 44 778999999999999999999999999999999999999999999998 89999999999985
No 102
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.45 E-value=3.2e-07 Score=66.92 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=42.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC--CCCChhhhc
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT--DDLSISDLE 107 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le--D~~tL~dy~ 107 (168)
+.+.+.+++||..||++|++++|||+++|+|+|.|+.|. .......|.
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence 789999999999999999999999999999999998764 445555666
No 103
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.40 E-value=3.8e-07 Score=74.76 Aligned_cols=75 Identities=16% Similarity=0.286 Sum_probs=68.3
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
...++|.|+. ++ +.+.|.+++++..|++..+++.|+++.+++++|.|+.|.++.|.++++ +++|++++...||.
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 3458888974 44 778999999999999999999999999999999999999999999998 88999999999996
Q ss_pred c
Q psy2142 122 L 122 (168)
Q Consensus 122 v 122 (168)
.
T Consensus 134 ~ 134 (207)
T 3tix_A 134 P 134 (207)
T ss_dssp G
T ss_pred c
Confidence 3
No 104
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.33 E-value=2.9e-07 Score=64.53 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=57.1
Q ss_pred CceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCee-----cCCCCChhhhc---CCccceE
Q psy2142 48 NMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKT-----LTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 48 ~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~-----LeD~~tL~dy~---~sTL~Lv 114 (168)
..|.|-||+.+| +.|+|++++|+.+|+++|++..+++++.|.|+++-.+ +.++.+|+++| |++|.+.
T Consensus 3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 458899999987 7899999999999999999999999999999887766 45778899998 6777664
No 105
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.28 E-value=1e-07 Score=79.02 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=1.6
Q ss_pred eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142 46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG 120 (168)
....|+|.| +.++ ..+.|.+++.+..|++..++..|+++++++++|.|+.|.++.|.++++ +++|+++....||
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 356699999 7665 668999999999999999999999999999999999999999999998 8999999999999
Q ss_pred c
Q psy2142 121 K 121 (168)
Q Consensus 121 K 121 (168)
.
T Consensus 97 ~ 97 (227)
T 3v7o_A 97 L 97 (227)
T ss_dssp C
T ss_pred c
Confidence 6
No 106
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.85 E-value=3.1e-05 Score=62.64 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=68.4
Q ss_pred EEEeeCCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 42 VITMIENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 42 ~~~~~~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
........+.|.|++.++ ..+.+..++.+..|++..+++.|+++++++++|.|+.+.++.|..++. +++|++....
T Consensus 14 ~~~~~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 14 PEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp ----CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred ceeCCCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence 334446778999988433 578999999999999999999999999999999999999999999986 7899999999
Q ss_pred cCCc
Q psy2142 118 LGGK 121 (168)
Q Consensus 118 lGGK 121 (168)
.||.
T Consensus 94 ~Gg~ 97 (209)
T 3uf8_A 94 IGGS 97 (209)
T ss_dssp TTCC
T ss_pred cccc
Confidence 9985
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.69 E-value=5.5e-06 Score=72.91 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=1.4
Q ss_pred eCCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142 46 IENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK 121 (168)
Q Consensus 46 ~~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK 121 (168)
....++|.|++.+. ..+.|..+++...|++..++..|+++++++++|.|+.|.++.|.++++ +++|++.....||.
T Consensus 18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 34568888887433 678999999999999999999999999999999999999999999998 89999999999996
Q ss_pred cc
Q psy2142 122 LL 123 (168)
Q Consensus 122 v~ 123 (168)
..
T Consensus 98 ~~ 99 (360)
T 3ix6_A 98 RT 99 (360)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 108
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.60 E-value=0.00033 Score=50.92 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=59.8
Q ss_pred CCceEEEEEcCCc---eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142 47 ENMKRIIVRGQSN---YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF 114 (168)
Q Consensus 47 ~~~MQIfVR~~~~---~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv 114 (168)
...+.|.|++.++ +.+.|.+++....|...-++..|+++...+++|.|..|..+.|.++++ +.+|++.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3557888888765 468999999999999999999999999999999999999999999998 6677653
No 109
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.59 E-value=0.00037 Score=49.56 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=57.9
Q ss_pred ceEEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCC-CeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 49 MKRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALE-DFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 49 ~MQIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~-~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
.+.+.+|... .+.+.|.++.+|.+|-..-..+.|||++ ..+|.|.|..|..++++.+|+ +..|++++
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3566777764 3889999999999999999999999999 999999999999999999998 56666654
No 110
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.15 E-value=6.3e-05 Score=65.29 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=0.0
Q ss_pred CceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc
Q psy2142 48 NMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL 123 (168)
Q Consensus 48 ~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~ 123 (168)
..+.|.|++.+. ..+.|..+++...|++..+++.|+++.+++++|.|+.|.++.|.++++ +++|++.+...||...
T Consensus 29 ~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n~ 108 (389)
T 4da1_A 29 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENL 108 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccccc
Confidence 345666665322 568999999999999999999999999999999999999999999998 8999999999999744
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.98 E-value=0.0017 Score=46.85 Aligned_cols=71 Identities=7% Similarity=0.055 Sum_probs=57.7
Q ss_pred eeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 45 MIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 45 ~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
+....|.|.|-..++ .++.|.|+.++.+|=++..+..|+++++-.|.|++++|+=..++.--| +++|.++.
T Consensus 5 ~~~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 5 AGGGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp -----CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred ccCCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence 446778999998765 889999999999999999999999999999999999997777766665 77887764
No 112
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.71 E-value=0.0095 Score=43.37 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=60.0
Q ss_pred CceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142 48 NMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV 115 (168)
Q Consensus 48 ~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv 115 (168)
..+.|.|+..++ .-+.+..++-..-|...-+++.|++++..+++|.|..+.+++|-.+++ +.+|++++
T Consensus 20 ~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 448888886444 668999999999999999999999999999999999999999999998 77888765
No 113
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.66 E-value=0.012 Score=39.37 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=52.1
Q ss_pred ceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 49 MKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 49 ~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
.|+|.|.+.. ..++++.+..||.+|.+++ ++++....+..+|..+..+..|.+ ++.+.++..+-||
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~~L~~--gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEEEIFD--GDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTSBCCT--TCEEEEEECTTCC
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcccCCC--CCEEEEEeccccC
Confidence 5999999986 4778998889999999876 567778888899999987664332 6788877776665
No 114
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.07 E-value=0.0071 Score=46.06 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=32.7
Q ss_pred EEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCC
Q psy2142 51 RIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALE 86 (168)
Q Consensus 51 QIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~ 86 (168)
.|.|+.+++ .++.|+.+.+|.+++..|+...||+..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 688999987 789999999999999999999999754
No 115
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.96 E-value=0.026 Score=38.86 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=49.4
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCChhhhc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT---DDLSISDLE 107 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le---D~~tL~dy~ 107 (168)
+....|-||.++| ..-....++||.+|.+-|.. .+.++....|+ |-.+.|. .+.||.++|
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~g 71 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVK 71 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTT
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCC
Confidence 5567899999987 44588999999999999997 67788889998 5578883 467899998
No 116
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.96 E-value=0.055 Score=36.96 Aligned_cols=64 Identities=13% Similarity=0.308 Sum_probs=49.2
Q ss_pred eEEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 50 KRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
|+|.|+... ...+++.+..||++|=+ ..|||++.-.+.-+|+++..+..+ + ++++.++-..-||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~~l-~--GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQSV-E--VDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTSSS-C--CCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHHCC-C--CCEEEEEEeeccc
Confidence 788888763 25589999999998865 578999999899999999776644 2 7777766554555
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.63 E-value=0.21 Score=37.17 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=38.6
Q ss_pred ceEEEEcCCCCHHHHHHHHhhh--cCCCC------CCeEEEE----cCeecCCCC-------------Chhhhc---CCc
Q psy2142 59 NYVLECQQNETVSHLKNKVASL--EKVAL------EDFSLIC----SGKTLTDDL-------------SISDLE---SGS 110 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~--eGIp~------~~Q~Liy----~GK~LeD~~-------------tL~dy~---~sT 110 (168)
.+.+.|-..|||.++|++|-++ .|.|. ++.-|-+ .|++|.|++ ||+.|+ +++
T Consensus 25 ~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgat 104 (111)
T 4e71_A 25 AIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDGAT 104 (111)
T ss_dssp CEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTTCE
T ss_pred ceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCCCE
Confidence 3778888999999999999877 45554 4666766 356777743 566676 667
Q ss_pred cceEE
Q psy2142 111 IEIFV 115 (168)
Q Consensus 111 L~Lvv 115 (168)
+-|+.
T Consensus 105 l~l~~ 109 (111)
T 4e71_A 105 LILSK 109 (111)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76654
No 118
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.09 E-value=0.13 Score=36.42 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=43.4
Q ss_pred CceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe
Q psy2142 48 NMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK 95 (168)
Q Consensus 48 ~~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK 95 (168)
..|.|.|....++.|.|.++-+..+|.++|+++.++|++...|.|.-.
T Consensus 4 ~~~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CcEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 347888888888999999999999999999999999999999999763
No 119
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=93.99 E-value=0.21 Score=37.18 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=50.0
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeec--CC-CCChhhhc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTL--TD-DLSISDLE 107 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~L--eD-~~tL~dy~ 107 (168)
+....|-||.++| ..-....++||.+|.+-|... +.+.....|+ |-.+.| +| +.||.+++
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~g 107 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAG 107 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCC
Confidence 4568999999987 456889999999999999876 7777888887 568889 34 68899998
No 120
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.63 E-value=0.32 Score=34.12 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=46.8
Q ss_pred CceEEEEEcCC---------ceEEEEcCCCCHHHHHHHHhhhcC-C----------CCCCeEEEEcCeecCCCCChhhhc
Q psy2142 48 NMKRIIVRGQS---------NYVLECQQNETVSHLKNKVASLEK-V----------ALEDFSLICSGKTLTDDLSISDLE 107 (168)
Q Consensus 48 ~~MQIfVR~~~---------~~tleV~~s~TV~~LK~kI~~~eG-I----------p~~~Q~Liy~GK~LeD~~tL~dy~ 107 (168)
..|+|.|+... ..++++.+..||.+|.+.+..... + ......+..+|+....+..|.+
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~d-- 85 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKD-- 85 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCT--
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCC--
Confidence 46999999752 356788788999999999986531 1 1234567788988876554443
Q ss_pred CCccceEEEecCC
Q psy2142 108 SGSIEIFVPLLGG 120 (168)
Q Consensus 108 ~sTL~LvvrllGG 120 (168)
++++.+...+-||
T Consensus 86 GDeV~i~ppv~GG 98 (98)
T 1vjk_A 86 GDVVGVFPPVSGG 98 (98)
T ss_dssp TCEEEEESCC---
T ss_pred CCEEEEECCCCCC
Confidence 6778777766665
No 121
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.53 E-value=0.26 Score=32.86 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=45.1
Q ss_pred eEEEEEcCCc---eEEEEcCCCCHHHHHHHHhhhcCCCC--CCeEEEEcCeecCC-CCChhhhcCCccceEEEecCC
Q psy2142 50 KRIIVRGQSN---YVLECQQNETVSHLKNKVASLEKVAL--EDFSLICSGKTLTD-DLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~---~tleV~~s~TV~~LK~kI~~~eGIp~--~~Q~Liy~GK~LeD-~~tL~dy~~sTL~LvvrllGG 120 (168)
|.|.|+.+.. -++++ +..||.+|.+.+....++.. ..-.+.-+|....+ +..|.+ ++++.+..++.||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~--gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKD--GDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCT--TCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCC--CCEEEEECCCCCC
Confidence 6677776532 34777 56799999999986544322 34556678887543 333332 7788888887776
No 122
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=93.48 E-value=0.14 Score=35.95 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=48.0
Q ss_pred eEEEEEc---C-CceEEEEcCCCCHHHHHHHHhhhcCCCC-----CCeEEEEcCeecCCCCChhhhc
Q psy2142 50 KRIIVRG---Q-SNYVLECQQNETVSHLKNKVASLEKVAL-----EDFSLICSGKTLTDDLSISDLE 107 (168)
Q Consensus 50 MQIfVR~---~-~~~tleV~~s~TV~~LK~kI~~~eGIp~-----~~Q~Liy~GK~LeD~~tL~dy~ 107 (168)
+.|.|.. . +.+.|.++...||..|.+.|.+..+++. .+.++.-.|..|.++++|++|+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ 71 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCG 71 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGT
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCC
Confidence 4566664 2 3488999999999999999999998855 3567778899999999999998
No 123
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=93.23 E-value=0.17 Score=35.77 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=43.7
Q ss_pred CCceEEEEEcCCceEEEEcCC-CCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChh-hhc-CCccceEEEecCC
Q psy2142 47 ENMKRIIVRGQSNYVLECQQN-ETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSIS-DLE-SGSIEIFVPLLGG 120 (168)
Q Consensus 47 ~~~MQIfVR~~~~~tleV~~s-~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~-dy~-~sTL~LvvrllGG 120 (168)
...|+|.|. +-.+++++. .||.+|.+.+ ++++....+..+|..+..+.-.. .+. ++.|.++..+-||
T Consensus 18 ~~~M~I~vN---Ge~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 18 GGRHMLQLN---GKDVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ----CEEET---TEEECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC-
T ss_pred CcceEEEEC---CEEEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcccccC
Confidence 467888884 457778777 8999998876 56777778889999986421110 122 7788888776665
No 124
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=93.14 E-value=0.36 Score=34.91 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=49.8
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--C-CCChhhhc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT--D-DLSISDLE 107 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le--D-~~tL~dy~ 107 (168)
.....|-||.++| ..-....++||.+|.+-|....+.+.....|+ |--+.|. | +.||.|.+
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elg 78 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLE 78 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCC
Confidence 3457899999987 45588999999999999998877777777777 5678886 3 57899998
No 125
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=92.80 E-value=0.18 Score=32.94 Aligned_cols=62 Identities=18% Similarity=0.358 Sum_probs=43.3
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCC----CCChhhhcCCccceEEEecCC
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTD----DLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD----~~tL~dy~~sTL~LvvrllGG 120 (168)
|+|.|. +-.+++.+..||.+|.+.+ ++++....+..+|..+.. +..|.+ ++.+.++..+-||
T Consensus 1 m~i~vN---g~~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~~--gD~v~i~~~V~GG 66 (66)
T 1f0z_A 1 MQILFN---DQAMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQWAQHIVQD--GDQILLFQVIAGG 66 (66)
T ss_dssp CCEEES---SCEECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHHHTTCCCCT--TEEECEEESCCCC
T ss_pred CEEEEC---CEEEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchhcCCcCCCC--CCEEEEEeecccC
Confidence 566664 3467777888999999876 566777788899998864 233322 6677777666655
No 126
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=91.79 E-value=0.66 Score=34.45 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=48.8
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhh-cCCCCCCeEEE--EcCeecCC-CCChhhhc
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASL-EKVALEDFSLI--CSGKTLTD-DLSISDLE 107 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~-eGIp~~~Q~Li--y~GK~LeD-~~tL~dy~ 107 (168)
+....|-||.++| ..-....++||.+|.+-|... .+.+.....|+ |-.+.|+| +.||.|++
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eag 116 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEAN 116 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCC
Confidence 3458899999987 556889999999999999885 34556677777 56888976 58999998
No 127
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=90.78 E-value=0.22 Score=37.43 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=31.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICS 93 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~ 93 (168)
.++.|..++|+.+|++.|++..|+|+++|+|+.-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678889999999999999999999999999965
No 128
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=90.49 E-value=1.1 Score=32.14 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=47.6
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--CCCChhhhc
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT--DDLSISDLE 107 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le--D~~tL~dy~ 107 (168)
....|-||.++| +.-....++||.+|.+-|... +..+....|+ |-.+.|. .+.||.+++
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~g 86 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIG 86 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHT
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcC
Confidence 468999999987 455888999999999999954 5566777776 5578886 368999998
No 129
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=88.32 E-value=2.6 Score=35.61 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=54.6
Q ss_pred eEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcC----CCCCCeEEEE------cCeecCCCCChhhhc---CCccc---
Q psy2142 50 KRIIVRGQS-NYVLECQQNETVSHLKNKVASLEK----VALEDFSLIC------SGKTLTDDLSISDLE---SGSIE--- 112 (168)
Q Consensus 50 MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eG----Ip~~~Q~Liy------~GK~LeD~~tL~dy~---~sTL~--- 112 (168)
+.|.|.-.+ +-++..+|+.||.++-..|.+... .++++--|.. .|.-|++..||+.|+ +..++
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 4 LSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 344454454 378999999999999999877642 4678888888 567799999999998 44444
Q ss_pred ----eEEEecCCcc
Q psy2142 113 ----IFVPLLGGKL 122 (168)
Q Consensus 113 ----LvvrllGGKv 122 (168)
+.|.+++|..
T Consensus 84 ~~~~~~V~l~dg~~ 97 (371)
T 3ivf_A 84 KQRPLKIRMLDGTV 97 (371)
T ss_dssp CEEEEEEECTTSCE
T ss_pred ceeEEEEECcCCCE
Confidence 4577888753
No 130
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=88.18 E-value=2.2 Score=28.80 Aligned_cols=59 Identities=12% Similarity=0.285 Sum_probs=41.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcC-CC-----C-----CCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 60 YVLECQQNETVSHLKNKVASLEK-VA-----L-----EDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eG-Ip-----~-----~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
..+++.+..||.+|.+.+..... +. . ....+.-+|+...++..|.+ ++++.+..++.||
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~--gDeV~i~Ppv~GG 89 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAA--GDELALFPPVSGG 89 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCT--TCEEEEECCCSCC
T ss_pred EEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCC--CCEEEEECCCCCC
Confidence 56788778899999999987642 10 0 12467778988876555443 7788888877776
No 131
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.08 E-value=2.2 Score=31.82 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=25.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhh--cCCCC------CCeEEEE
Q psy2142 60 YVLECQQNETVSHLKNKVASL--EKVAL------EDFSLIC 92 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~--eGIp~------~~Q~Liy 92 (168)
+.+.|-..|||.++|++|-+. .|.|. ++.-|-+
T Consensus 29 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEw 69 (117)
T 4e74_A 29 VPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEW 69 (117)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEE
T ss_pred eEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEE
Confidence 778888999999999999877 46654 4566665
No 132
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=88.08 E-value=2.4 Score=32.51 Aligned_cols=58 Identities=16% Similarity=0.289 Sum_probs=41.8
Q ss_pred ceEEEEcCCCCHHHHHHHHhhh--cCCCC------CCeEEEE----cCe-ecCCCC-------------Chhhhc---CC
Q psy2142 59 NYVLECQQNETVSHLKNKVASL--EKVAL------EDFSLIC----SGK-TLTDDL-------------SISDLE---SG 109 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~--eGIp~------~~Q~Liy----~GK-~LeD~~-------------tL~dy~---~s 109 (168)
.+.+.|-..|||.++|++|-++ .|+|- ++.-|-+ +|+ +|.|++ ||+.|+ ++
T Consensus 42 ~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga 121 (138)
T 2r2o_A 42 GVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGA 121 (138)
T ss_dssp CEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTC
T ss_pred ceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCC
Confidence 3788999999999999999987 45644 4556655 343 577652 788887 67
Q ss_pred ccceEEE
Q psy2142 110 SIEIFVP 116 (168)
Q Consensus 110 TL~Lvvr 116 (168)
++-|+.+
T Consensus 122 ~l~l~~~ 128 (138)
T 2r2o_A 122 TVALVPC 128 (138)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 7777654
No 133
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=87.93 E-value=1.4 Score=35.58 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=40.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCC-CeEEEE-c----CeecCC-CCChhhhc
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALE-DFSLIC-S----GKTLTD-DLSISDLE 107 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~-~Q~Liy-~----GK~LeD-~~tL~dy~ 107 (168)
+++.++..+||.+|++.+....+||++ +.+|.. . ...|.| +.||.+++
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~ 208 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAG 208 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTT
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhC
Confidence 557789999999999999999999997 699985 2 346666 48999998
No 134
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=87.32 E-value=0.26 Score=33.25 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=41.4
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
++.++++.+..||.+|.+.+ +++.+...+..+|+....+..|.+ ++.+.+...+-||
T Consensus 21 n~~~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~~~L~d--GD~V~i~ppv~GG 77 (77)
T 1rws_A 21 IEKEIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLEDDEVKD--GDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSSSCCCS--SCCCBCSCCCCCC
T ss_pred CCEEEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCCCCcCC--CCEEEEEcccccC
Confidence 34566777788999998765 466777778899999977644433 6788877776665
No 135
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=86.51 E-value=0.94 Score=30.03 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=38.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcC-----CCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 60 YVLECQQNETVSHLKNKVASLEK-----VALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eG-----Ip~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
.+++ .+..||.+|.+.+..... ++.....+..+|+...++..|.+ ++++.+...+.||
T Consensus 19 ~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~--gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 19 TEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTD--GDEVAFFPPVTGG 81 (81)
T ss_dssp EEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCT--TCEEEEECCCCCC
T ss_pred EEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCC--CCEEEEeCCCCCC
Confidence 3344 456799999999875531 23334568889998865554433 6788887777666
No 136
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=86.49 E-value=1.9 Score=35.93 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=40.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe-ecCCC-CChhhhc
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK-TLTDD-LSISDLE 107 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK-~LeD~-~tL~dy~ 107 (168)
+.+.+.+.+|+.++++.|++..+|++++|.|+|.+. ..-|. ....+|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 324 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred EEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 678899999999999999999999999999999984 43343 4456676
No 137
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=86.02 E-value=2.2 Score=34.12 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=45.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCC-CeEEEE-c----CeecCC-CCChhhhc---CCccceEEEecCC
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALE-DFSLIC-S----GKTLTD-DLSISDLE---SGSIEIFVPLLGG 120 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~-~Q~Liy-~----GK~LeD-~~tL~dy~---~sTL~LvvrllGG 120 (168)
+++.++..+||.+|++.+....+||++ +.+|.. . ...|+| +.||.+++ +..|-+-++...|
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 668889999999999999999999997 688873 2 345666 46999998 3444444444344
No 138
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=84.67 E-value=2.7 Score=31.83 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=40.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhh--cCCCC------CCeEEEE----cCe-ecCCCC-------------Chhhhc---CCc
Q psy2142 60 YVLECQQNETVSHLKNKVASL--EKVAL------EDFSLIC----SGK-TLTDDL-------------SISDLE---SGS 110 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~--eGIp~------~~Q~Liy----~GK-~LeD~~-------------tL~dy~---~sT 110 (168)
+.+.|=..|||.++|++|-++ .|.|. +++-|-+ .|+ +|.|++ ||+.|+ ++|
T Consensus 19 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dgat 98 (127)
T 3h6n_A 19 LSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEGAS 98 (127)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTTCE
T ss_pred eeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCCCE
Confidence 778888999999999999887 45554 6777877 344 477643 455665 677
Q ss_pred cceEEE
Q psy2142 111 IEIFVP 116 (168)
Q Consensus 111 L~Lvvr 116 (168)
+-|+.+
T Consensus 99 v~l~~~ 104 (127)
T 3h6n_A 99 LAMSLI 104 (127)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 776644
No 139
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=84.55 E-value=2.4 Score=28.47 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=45.1
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC----CChhhhcCCccceEEEecCCccc
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD----LSISDLESGSIEIFVPLLGGKLL 123 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~----~tL~dy~~sTL~LvvrllGGKv~ 123 (168)
|+|.|. +-.+++ +..||.+|-+. .++++....+-.+|.++.-+ ..|.+ ++.|.++-.+-||.-|
T Consensus 1 M~I~vN---G~~~e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~~~~~~~L~d--GD~veIv~~VgGG~~~ 68 (73)
T 2kl0_A 1 MLVTIN---GEQREV-QSASVAALMTE----LDCTGGHFAVALNYDVVPRGKWDETPVTA--GDEIEILTPRQGGLEH 68 (73)
T ss_dssp CCEEET---TEEECC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHHHHTTCBCCT--TCEEEEECCCCCCCSC
T ss_pred CEEEEC---CEEEEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECChHHcCcccCCC--CCEEEEEccccCCccc
Confidence 566664 446677 67899998764 57888888899999998532 12221 7888888877777543
No 140
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=83.59 E-value=2 Score=29.31 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=45.3
Q ss_pred eEEEEEcCCceEEEEc--CCCCHHHHHHHHhhhcCCC-CCCeEEEEcCeecCCCCChhhh--c-CCccceEEEecCCc
Q psy2142 50 KRIIVRGQSNYVLECQ--QNETVSHLKNKVASLEKVA-LEDFSLICSGKTLTDDLSISDL--E-SGSIEIFVPLLGGK 121 (168)
Q Consensus 50 MQIfVR~~~~~tleV~--~s~TV~~LK~kI~~~eGIp-~~~Q~Liy~GK~LeD~~tL~dy--~-~sTL~LvvrllGGK 121 (168)
|+|.|. +-.++++ +..||.+|-+++ |++ +....+-.+|.++.-+. ..+. . ++.|.++-.+-||.
T Consensus 1 M~I~vN---Ge~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~~-~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 1 MNLTVN---GKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLEREA-FDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp CEEEET---TEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTTH-HHHCEECSSBCEEECCCCCCSC
T ss_pred CEEEEC---CEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChHH-cCcccCCCCCEEEEEeeecCCC
Confidence 677764 4577887 778999997754 677 77777889999996542 2222 2 77888887777764
No 141
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=83.28 E-value=1.3 Score=41.27 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=39.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe-ecCCCCChhhh
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK-TLTDDLSISDL 106 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK-~LeD~~tL~dy 106 (168)
+.+.+++++|+.+|+..|++..|||++.|.|++.+. +++.....++|
T Consensus 324 ~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 324 HTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp CEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 678999999999999999999999999999998654 44555566765
No 142
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=83.14 E-value=2.5 Score=29.61 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=43.1
Q ss_pred ceEEEEEcCC-------ceEEEEcCCCCHHHHHHHHhhhc-CCCCC---------Ce-------EEEEcCeecCC----C
Q psy2142 49 MKRIIVRGQS-------NYVLECQQNETVSHLKNKVASLE-KVALE---------DF-------SLICSGKTLTD----D 100 (168)
Q Consensus 49 ~MQIfVR~~~-------~~tleV~~s~TV~~LK~kI~~~e-GIp~~---------~Q-------~Liy~GK~LeD----~ 100 (168)
+|+|.|+... ...++++ ..||.+|.+.+.... ++... .. .+..+|+.... +
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~ 81 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLE 81 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTT
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCC
Confidence 5899999762 2355666 689999999988763 11110 12 57788887632 2
Q ss_pred CChhhhcCCccceEEEecCC
Q psy2142 101 LSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 101 ~tL~dy~~sTL~LvvrllGG 120 (168)
..|.+ ++++.+...+-||
T Consensus 82 ~~L~~--gD~V~i~ppv~GG 99 (99)
T 2l52_A 82 TLLKD--SDEIGILPPVSGG 99 (99)
T ss_dssp SCCCT--TEEEEEECCCSCC
T ss_pred CCCCC--CCEEEEECCCCCC
Confidence 22222 6678877766665
No 143
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.97 E-value=5.7 Score=28.41 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=56.5
Q ss_pred eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE---cCeecCCCCChhhhcCCccceE
Q psy2142 46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLIC---SGKTLTDDLSISDLESGSIEIF 114 (168)
Q Consensus 46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy---~GK~LeD~~tL~dy~~sTL~Lv 114 (168)
.+....+.|.-..+ ..+.|+|.-++++|--.|.+.-.+.++.-.|.- .+.+|+=+.+|.|||...|.++
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirELya~ 80 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRELYAM 80 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSEEEEE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhhhhee
Confidence 46777888877755 778999999999999999999999999988874 4567777889999996655543
No 144
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=81.80 E-value=1.7 Score=27.98 Aligned_cols=56 Identities=13% Similarity=0.251 Sum_probs=39.0
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC----CChhhhcCCccceEEEecCC
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD----LSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~----~tL~dy~~sTL~LvvrllGG 120 (168)
++-.+++ +..||.+|.+.+ ++++....+..+|..+..+ ..|.+ ++.+.++..+-||
T Consensus 5 Ng~~~~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~d--gD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRPL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLEVPDRPLRD--GDVVEVVALMQGG 64 (64)
T ss_dssp TTEEECC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGGCCCCCCCT--TCEEEEEECCCC-
T ss_pred CCEEEEc-CCCcHHHHHHHc----CCCCCcEEEEECCEECCccccCCcCCCC--CCEEEEEeecccC
Confidence 4556777 778999999876 4567777788999988633 32322 6788877766665
No 145
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=81.46 E-value=5.8 Score=26.94 Aligned_cols=70 Identities=9% Similarity=0.162 Sum_probs=43.2
Q ss_pred eEEEEEcCC--------ceEEEEcCCCCHHHHHHHHhhhcC-C-----C-------CCCeEEEEcCeecCCCCChhh-hc
Q psy2142 50 KRIIVRGQS--------NYVLECQQNETVSHLKNKVASLEK-V-----A-------LEDFSLICSGKTLTDDLSISD-LE 107 (168)
Q Consensus 50 MQIfVR~~~--------~~tleV~~s~TV~~LK~kI~~~eG-I-----p-------~~~Q~Liy~GK~LeD~~tL~d-y~ 107 (168)
|+|.|+.+. ...+++ +..||.+|.+.+..... + . .....+.-+|....+..-+.. ..
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~ 79 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIA 79 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCC
Confidence 677888541 135775 45799999999987642 1 1 013566678887764221211 12
Q ss_pred -CCccceEEEecCC
Q psy2142 108 -SGSIEIFVPLLGG 120 (168)
Q Consensus 108 -~sTL~LvvrllGG 120 (168)
++++.+..++.||
T Consensus 80 ~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 80 DGDSVTILPAVAGG 93 (93)
T ss_dssp TTCEEEEEECCTTC
T ss_pred CCCEEEEECCCCCC
Confidence 7888888888877
No 146
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=81.35 E-value=7.9 Score=26.85 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=23.9
Q ss_pred ceEEEEEcC-------Cc---eEEEEc--CCCCHHHHHHHHhhhc
Q psy2142 49 MKRIIVRGQ-------SN---YVLECQ--QNETVSHLKNKVASLE 81 (168)
Q Consensus 49 ~MQIfVR~~-------~~---~tleV~--~s~TV~~LK~kI~~~e 81 (168)
+|+|.|+.+ ++ .++++. +..||.+|.+.+.+..
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 478888853 12 456665 6789999999998765
No 147
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=81.05 E-value=1.3 Score=29.14 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=39.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCe--EEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDF--SLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q--~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG 120 (168)
.++++.+..||.+|.+.+..... ..... .+..+|+....+..|.+ ++.+.+...+-||
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~~~L~~--gD~V~i~ppv~GG 77 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKSDFIQP--NDTVALIPPVSGG 77 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTTSEECT--TCEEEEECSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCCCCcCC--CCEEEEECCCCCC
Confidence 45666677899999999876531 01233 67789998876543433 6778877766665
No 148
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=79.99 E-value=1.6 Score=39.48 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=31.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICS 93 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~ 93 (168)
.++.|..++|+.+|+++|++..|+|+++|||+.-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~ 71 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 71 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEE
Confidence 4678999999999999999999999999999854
No 149
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=79.61 E-value=7.6 Score=36.45 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=40.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhh--cCCCC------CCeEEEE----cCe-ecCCCC-------------Chhhhc---CCc
Q psy2142 60 YVLECQQNETVSHLKNKVASL--EKVAL------EDFSLIC----SGK-TLTDDL-------------SISDLE---SGS 110 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~--eGIp~------~~Q~Liy----~GK-~LeD~~-------------tL~dy~---~sT 110 (168)
+.+.|-..|||.++|++|-++ .|.|. ++.-|-+ .|+ +|.|++ ||+.|+ +++
T Consensus 276 i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~ 355 (644)
T 3hm6_X 276 VPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGAT 355 (644)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCE
T ss_pred eeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCCcE
Confidence 778899999999999999866 46554 4556665 233 577754 677887 778
Q ss_pred cceEE
Q psy2142 111 IEIFV 115 (168)
Q Consensus 111 L~Lvv 115 (168)
+-|+.
T Consensus 356 v~L~p 360 (644)
T 3hm6_X 356 VALVP 360 (644)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87764
No 150
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=79.38 E-value=4.1 Score=29.03 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=46.8
Q ss_pred EEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142 62 LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 62 leV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl 117 (168)
-.++=.+.+..||+.++.+.|++-+.-.++..+..|+++.+|.|-+ ...+.+.+..
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3556678999999999999999999999999999999999998865 4456666554
No 151
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=76.87 E-value=4.7 Score=29.11 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=41.5
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE-------cCeecCCCCChhhh
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLIC-------SGKTLTDDLSISDL 106 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy-------~GK~LeD~~tL~dy 106 (168)
+++|..+....+|.|++++|+.++=+.+++..++..+.-.=+| .-+.|+|...|-+.
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 4555544455899999999999999999999887544433333 34678888777664
No 152
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=76.52 E-value=2.1 Score=27.63 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=38.5
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceE
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIF 114 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~Lv 114 (168)
|+|.|..+++-.+++....|+.+|-+.+... ++....-...+|+..+-+..|.+ ++++.++
T Consensus 1 m~i~i~~p~g~~~~~~~g~T~~dla~~i~~~--l~~~~vaa~vNg~lvdl~~~L~~--~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEIKRLPQGATALDFAYSLHSD--LGDHCIGAKVNHKLVPLSYVLNS--GDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCEEEECTTCBHHHHHHHHCSH--HHHTEEEEEETTEECCTTCBCCS--SSBEEEE
T ss_pred CeEEEEcCCCCEEEcCCCCcHHHHHHHHhhc--cccceEEEEECCEEeCCCcCcCC--CCEEEEE
Confidence 7788888888788999999999998887432 11122233467876654444432 4444444
No 153
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=74.59 E-value=11 Score=35.26 Aligned_cols=70 Identities=11% Similarity=0.199 Sum_probs=46.7
Q ss_pred CceEEEEEcCC-----ceEEEEcCCCCHHHHHHHHhhh--cCCC------CCCeEEEE----cCe-ecCCC---------
Q psy2142 48 NMKRIIVRGQS-----NYVLECQQNETVSHLKNKVASL--EKVA------LEDFSLIC----SGK-TLTDD--------- 100 (168)
Q Consensus 48 ~~MQIfVR~~~-----~~tleV~~s~TV~~LK~kI~~~--eGIp------~~~Q~Liy----~GK-~LeD~--------- 100 (168)
..|.|.|-.++ .+.+.|-..|||.++|++|-++ .|.| +++.-|-+ .|+ +|.|+
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCc
Confidence 34666665442 2778899999999999999877 3554 45666765 233 46653
Q ss_pred ----CChhhhc---CCccceEEEe
Q psy2142 101 ----LSISDLE---SGSIEIFVPL 117 (168)
Q Consensus 101 ----~tL~dy~---~sTL~Lvvrl 117 (168)
-||+.|+ ++++-|+.+.
T Consensus 312 wkrLNTL~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp EEECCBTTTTTCCTTCEEEEEEC-
T ss_pred eeEecchhhcCCCCCceEEEEecc
Confidence 2567777 7788776554
No 154
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=70.33 E-value=9.5 Score=25.36 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=38.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcC------C-----CCCCeEEEEcCeecCC----CCChhhhcCCccceEEEecCC
Q psy2142 60 YVLECQQNETVSHLKNKVASLEK------V-----ALEDFSLICSGKTLTD----DLSISDLESGSIEIFVPLLGG 120 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eG------I-----p~~~Q~Liy~GK~LeD----~~tL~dy~~sTL~LvvrllGG 120 (168)
..++++...||.+|.+.+..... + ......+..+|+.... +..|.+ ++++.++..+-||
T Consensus 17 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~--gD~V~i~ppv~GG 90 (90)
T 2g1e_A 17 KEETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKD--DDKIDLFPPVAGG 90 (90)
T ss_dssp SEEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCT--TCEEEEECCTTCC
T ss_pred CEEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCC--CCEEEEeCCCCCC
Confidence 35677777899999999886531 1 1134567788987752 222221 6788887776665
No 155
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=65.07 E-value=12 Score=31.37 Aligned_cols=67 Identities=7% Similarity=0.092 Sum_probs=46.5
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc-------CeecCCCCChhhhc-----CCccceEEE
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICS-------GKTLTDDLSISDLE-----SGSIEIFVP 116 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~-------GK~LeD~~tL~dy~-----~sTL~Lvvr 116 (168)
++||+-.....+|.|++++|+.+|=+.++...+++...-..+|. -++|+|...+-+.- ++.-.+.++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~ 112 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFM 112 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEE
Confidence 34444443458899999999999999998888776555555554 58888888877642 444445443
No 156
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=63.63 E-value=23 Score=29.15 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=43.9
Q ss_pred ceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc-------CeecCCCCChhhhc---CCccceEEE
Q psy2142 49 MKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICS-------GKTLTDDLSISDLE---SGSIEIFVP 116 (168)
Q Consensus 49 ~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~-------GK~LeD~~tL~dy~---~sTL~Lvvr 116 (168)
.+.||.-.....+|.|++++|+.+|=+.+....+++.+.-..++. -++|+|...+-+.- ++.-.+.++
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s~~~l~f~ 87 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESKFLFR 87 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHHHHTCCSSCEEEEE
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHHHhccCCCceEEEe
Confidence 456665444458899999999999999999887776666666665 68888887766642 444445544
No 157
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=62.74 E-value=25 Score=24.74 Aligned_cols=49 Identities=12% Similarity=-0.021 Sum_probs=35.3
Q ss_pred CceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeec
Q psy2142 48 NMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTL 97 (168)
Q Consensus 48 ~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~L 97 (168)
+.|+|.|=-.+ -+.|.|.++-+..+|+.+|.++-.+. +.+.+.|.+-+.
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde~~ 60 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFDGS 60 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSSSC
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCCCC
Confidence 45666665554 49999999999999999999998873 333344454433
No 158
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=58.49 E-value=37 Score=23.79 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=35.8
Q ss_pred CceEEEEEcCC---ceEEEEcCCC-CHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142 48 NMKRIIVRGQS---NYVLECQQNE-TVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE 107 (168)
Q Consensus 48 ~~MQIfVR~~~---~~tleV~~s~-TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~ 107 (168)
.+..|+-|.-. -.++..+... +|.+||.+|.++.++-..+.-|. |.|.+|-++|.
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~-----i~na~T~eeY~ 63 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ-----ITNAQTKEEYT 63 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE-----EEESSSCCEEC
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE-----EeCCCCCCccC
Confidence 34566666542 2567776554 99999999999988755444443 23456666776
No 159
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=58.07 E-value=46 Score=23.88 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=46.3
Q ss_pred eeCCceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc-----CeecCCCCChhhhcCCccc
Q psy2142 45 MIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICS-----GKTLTDDLSISDLESGSIE 112 (168)
Q Consensus 45 ~~~~~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~-----GK~LeD~~tL~dy~~sTL~ 112 (168)
+..+.+.+++=..+..+|+|.|+.|+.+-=.++-+.-|+.++. +-+|. +.+++.+..++.+.+..|.
T Consensus 11 ~~~~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~-C~Vy~~~~~~~~~I~WdtDi~~L~geEL~ 82 (96)
T 3ny5_A 11 MQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPEC-CAVYRIQDGEKKPIGWDTDISWLTGEELH 82 (96)
T ss_dssp CSSCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGG-EEEEECC---CEEECTTBBGGGGTTCEEE
T ss_pred hhhCEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHH-eEEEEccCCCcCcccccccchhcccceEE
Confidence 3344455555444446789999999999989988889998854 45553 3556767777776655554
No 160
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=54.10 E-value=37 Score=24.43 Aligned_cols=34 Identities=6% Similarity=-0.189 Sum_probs=25.0
Q ss_pred CceEEEEEcC-------C---ceEEEEcC---CCCHHHHHHHHhhhc
Q psy2142 48 NMKRIIVRGQ-------S---NYVLECQQ---NETVSHLKNKVASLE 81 (168)
Q Consensus 48 ~~MQIfVR~~-------~---~~tleV~~---s~TV~~LK~kI~~~e 81 (168)
..|+|.|+.+ + .+.++++. ..||.+|-+.|.+..
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~ 56 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL 56 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence 4599999964 2 24578774 359999999998764
No 161
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.19 E-value=19 Score=25.55 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=43.4
Q ss_pred ceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCChhhhcCCccceEEE
Q psy2142 49 MKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLIC--SGKTLTDDLSISDLESGSIEIFVP 116 (168)
Q Consensus 49 ~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy--~GK~LeD~~tL~dy~~sTL~Lvvr 116 (168)
.-.+.|++.+. .-.-|.. .+..+|+.+..+..+++.+.-.|.. .|..++|++-+..+...|+.+++.
T Consensus 9 ~kpfkV~~~~Rs~k~GV~A-~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~ 78 (91)
T 2eel_A 9 ARPFRVSNHDRSSRRGVMA-SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILE 78 (91)
T ss_dssp CEEEEEECTTSCCCEEEEE-SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEEE
T ss_pred CCCEEEecCCCCeEEeEEc-CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEEc
Confidence 34556666542 2233332 2899999999999999766666665 488887765555555666666553
No 162
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=51.02 E-value=29 Score=25.47 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=43.0
Q ss_pred CCceEEEEEcC--------CceEEEEcCCCCHHHHHHHHhhhcCCCCCC-eEEEEcCeecCCCCChhhh
Q psy2142 47 ENMKRIIVRGQ--------SNYVLECQQNETVSHLKNKVASLEKVALED-FSLICSGKTLTDDLSISDL 106 (168)
Q Consensus 47 ~~~MQIfVR~~--------~~~tleV~~s~TV~~LK~kI~~~eGIp~~~-Q~Liy~GK~LeD~~tL~dy 106 (168)
+..+.|.|.-. +..-+-|..+.||+++...|.....+++++ ..|+.++....-+.++++.
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 45556666422 234567899999999999999999998887 4455566655667788874
No 163
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=48.31 E-value=67 Score=22.40 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=36.2
Q ss_pred CceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCC-eEEEEcC
Q psy2142 48 NMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALED-FSLICSG 94 (168)
Q Consensus 48 ~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~-Q~Liy~G 94 (168)
..|+|.+.-.+ -..+.++++-+..+|.++|.+..+++..+ ..|.|--
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp SCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred CeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 34566665553 37789999999999999999999987655 6777754
No 164
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=47.72 E-value=1.2e+02 Score=25.19 Aligned_cols=50 Identities=10% Similarity=0.221 Sum_probs=38.7
Q ss_pred EEeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCC-CCeEEEE
Q psy2142 43 ITMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVAL-EDFSLIC 92 (168)
Q Consensus 43 ~~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~-~~Q~Liy 92 (168)
+......+.+.|..+++ .+++|+++.|+.+|=+.|++..|+.. +..-|.+
T Consensus 79 l~~~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 79 MEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp EEEEECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred eeccCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 33446678888998876 67899999999999999999999853 3444544
No 165
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=47.69 E-value=93 Score=25.15 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=44.7
Q ss_pred CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCC-CCeEEEE--cCe--ecCCCCChhhhc
Q psy2142 47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVAL-EDFSLIC--SGK--TLTDDLSISDLE 107 (168)
Q Consensus 47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~-~~Q~Liy--~GK--~LeD~~tL~dy~ 107 (168)
...+.+.|..+++ +.++++++.|+.+|=+.|.+..||.. +-.-|.| .|. .|+.+..|.+..
T Consensus 20 ~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~ 86 (314)
T 1h4r_A 20 PKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHD 86 (314)
T ss_dssp -CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSS
T ss_pred CCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcC
Confidence 4668888888876 67899999999999999999999864 3344555 222 366666777653
No 166
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=46.40 E-value=78 Score=22.63 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=42.0
Q ss_pred EEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcC--eecCCCCChhhhcCCccc
Q psy2142 51 RIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSG--KTLTDDLSISDLESGSIE 112 (168)
Q Consensus 51 QIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~G--K~LeD~~tL~dy~~sTL~ 112 (168)
.|-+=.+++ .+|+|.|+.|+.+-=.++-+.-|+.++.=.++ ..| .+++.++.++.+.+..|.
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~L~~eEL~ 86 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLTGEELH 86 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEEEECTTSBGGGGTTCEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCccccchhHhhhhccCcEEE
Confidence 333334544 56899999999999999999999988554444 124 556666667766544433
No 167
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=46.39 E-value=30 Score=25.85 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=44.5
Q ss_pred CCceEEEEE-cC--------CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE-EcCeec-CCCCChhhh
Q psy2142 47 ENMKRIIVR-GQ--------SNYVLECQQNETVSHLKNKVASLEKVALEDFSLI-CSGKTL-TDDLSISDL 106 (168)
Q Consensus 47 ~~~MQIfVR-~~--------~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li-y~GK~L-eD~~tL~dy 106 (168)
++.+.|.|. .. +..-+-|..+.||+++..-|....++++++-..+ |.+..+ .-+.++++.
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 456777774 21 2244678999999999999999999998887766 777766 446678774
No 168
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=46.34 E-value=34 Score=25.45 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=36.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeec-CCCCChhhh
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTL-TDDLSISDL 106 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~L-eD~~tL~dy 106 (168)
.-+-|..+.||+++...|.....+++++-..+|-+..+ .-+.++++.
T Consensus 55 ~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 55 KKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 45678999999999999999999988885555544445 556778874
No 169
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=42.41 E-value=97 Score=22.59 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=41.9
Q ss_pred eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE------cC--eecCCCCChhhhcCCccc
Q psy2142 50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLIC------SG--KTLTDDLSISDLESGSIE 112 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy------~G--K~LeD~~tL~dy~~sTL~ 112 (168)
+.+|+=+.+..+|+|.++.|+.+-=.++-+.-|+.++ ++-+| .| -.++.+..++.+.+..|.
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe-~C~Vy~~~~~~~~~~~~i~WdtDi~~L~geEL~ 90 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPE-CCAVFRLLQEHKGKKARLDWNTDAASLIGEELQ 90 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTT-TEEEEECCCSCSSSCEECCTTCBHHHHTTSEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHH-HceeEEccccCCCcccccchhhhhhhccCcEEE
Confidence 3344333334679999999999999999889999874 45555 24 255666667776544433
No 170
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=42.10 E-value=38 Score=27.13 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=40.8
Q ss_pred eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCC-eEEEEc---Ce--ecCCCCChhhh
Q psy2142 50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALED-FSLICS---GK--TLTDDLSISDL 106 (168)
Q Consensus 50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~-Q~Liy~---GK--~LeD~~tL~dy 106 (168)
|.+.|..+++ ..+++++..|+.+|=+.|.+..|+...+ .-|.|. |. .|+.+..+.+.
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q 65 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQ 65 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGS
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhh
Confidence 5677888876 6789999999999999999999985443 445542 22 34555556554
No 171
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=40.29 E-value=48 Score=23.66 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=34.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeec-CCCCChhhh
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTL-TDDLSISDL 106 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~L-eD~~tL~dy 106 (168)
.-+-|..+.||+++..-|....++++++-..+|.+..+ .-+.++++.
T Consensus 46 ~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 46 RKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred eEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 34678889999999999998889988775444544445 556778874
No 172
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=40.16 E-value=83 Score=22.06 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=34.3
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE--cC--eecCCCCChhhhc
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLIC--SG--KTLTDDLSISDLE 107 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy--~G--K~LeD~~tL~dy~ 107 (168)
..+|+|.|+.|+.+-=.++-+.-|+.++.=.++- .| .+++.+..++.+.
T Consensus 19 rT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~L~ 71 (86)
T 1wxm_A 19 RTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAPLD 71 (86)
T ss_dssp EEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEECSSSBSTTCS
T ss_pred eEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCccccchhHhhhhcc
Confidence 3668999999999999999999999886544442 24 3445555455443
No 173
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=40.14 E-value=34 Score=27.96 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=42.8
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCC-eEEEEcC-----eecCCCCChhhh
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALED-FSLICSG-----KTLTDDLSISDL 106 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~-Q~Liy~G-----K~LeD~~tL~dy 106 (168)
...|.+.|..+++ .+++|++..|+.+|=++|.+..||...+ .-|.|.. ..|+.+..+.+.
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh
Confidence 4668899998876 7789999999999999999999985443 4555532 235555555544
No 174
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=39.87 E-value=56 Score=25.65 Aligned_cols=46 Identities=4% Similarity=0.035 Sum_probs=33.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc-------CeecCCCCChhh
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICS-------GKTLTDDLSISD 105 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~-------GK~LeD~~tL~d 105 (168)
.++.|+++.|+.+|-+.+.+..+++.+...-++. -++|+|...+-+
T Consensus 47 k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~v~~ 99 (291)
T 3tca_A 47 KSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHENVVE 99 (291)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchhHHH
Confidence 6799999999999999999998886654333321 357777765444
No 175
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=38.73 E-value=1.4e+02 Score=27.10 Aligned_cols=59 Identities=14% Similarity=0.005 Sum_probs=42.8
Q ss_pred CceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCC-CCeEEEEcC-----eecCCCCChhhh
Q psy2142 48 NMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVAL-EDFSLICSG-----KTLTDDLSISDL 106 (168)
Q Consensus 48 ~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~-~~Q~Liy~G-----K~LeD~~tL~dy 106 (168)
..+.+.|..+++ +.+.|+++.|+.+|=..|....||.. +-.-|.|.. ..|+.+.+|.+.
T Consensus 3 k~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q 68 (575)
T 2i1j_A 3 KSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQ 68 (575)
T ss_dssp CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGS
T ss_pred ceEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHh
Confidence 457788888876 77899999999999999999999854 345555532 245555555554
No 176
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=38.44 E-value=54 Score=23.92 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=42.0
Q ss_pred CCceEEEEEcC--------CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeec-CCCCChhhh
Q psy2142 47 ENMKRIIVRGQ--------SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTL-TDDLSISDL 106 (168)
Q Consensus 47 ~~~MQIfVR~~--------~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~L-eD~~tL~dy 106 (168)
+..+.|.|.-. +..-+-|..+.||+++...|.....+++++-..+|-+..+ .-+.++++.
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 45566666422 2344668999999999999999999988776555544344 556778874
No 177
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=36.87 E-value=33 Score=24.75 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=34.7
Q ss_pred CHHHHHHHHhhhcCCCCC----CeEEEEcCeecCCCCChhhhcCCccceEE
Q psy2142 69 TVSHLKNKVASLEKVALE----DFSLICSGKTLTDDLSISDLESGSIEIFV 115 (168)
Q Consensus 69 TV~~LK~kI~~~eGIp~~----~Q~Liy~GK~LeD~~tL~dy~~sTL~Lvv 115 (168)
+..+|+.+..+..+++.. ...|...|..++|+.-+..+...|+.+++
T Consensus 38 SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL 88 (100)
T 1f2r_I 38 SLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVAL 88 (100)
T ss_dssp SHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEE
T ss_pred CHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEE
Confidence 899999999999999653 33344469999888766666666666655
No 178
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=36.37 E-value=56 Score=23.63 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=41.1
Q ss_pred CCceEEEEEcC--------CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeec-CCCCChhhh
Q psy2142 47 ENMKRIIVRGQ--------SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTL-TDDLSISDL 106 (168)
Q Consensus 47 ~~~MQIfVR~~--------~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~L-eD~~tL~dy 106 (168)
++.+.|.|... +..-+-|..+.||+++..-|....++++++-..+|-+..+ .-+.++++.
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHH
Confidence 34556666532 2234578889999999999998889988775455555445 556778874
No 179
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=35.82 E-value=61 Score=22.54 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=36.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC-eec-CCCCChhhh
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG-KTL-TDDLSISDL 106 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G-K~L-eD~~tL~dy 106 (168)
..+-|..+.|++++..-|..+..+++++-..+|-+ ..+ ..++++++.
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~L 70 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL 70 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHH
Confidence 56889999999999999999999988875555544 433 446778773
No 180
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=34.39 E-value=1.2e+02 Score=26.89 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=36.5
Q ss_pred CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCC--CCeEEEE
Q psy2142 48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVAL--EDFSLIC 92 (168)
Q Consensus 48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~--~~Q~Liy 92 (168)
..|.+.|..+++ .+++|++..|+.+|-+.|++..|+.. +..-|.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 457888888876 67899999999999999999999974 4455554
No 181
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=30.47 E-value=43 Score=25.65 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=39.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcC-CC---------CCCeEEEEcCeecCCCCChhh-hc-CCccceEEEecCCcc
Q psy2142 60 YVLECQQNETVSHLKNKVASLEK-VA---------LEDFSLICSGKTLTDDLSISD-LE-SGSIEIFVPLLGGKL 122 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eG-Ip---------~~~Q~Liy~GK~LeD~~tL~d-y~-~sTL~LvvrllGGKv 122 (168)
..++++. .||.+|.+.+..... +. .....+..+|.......-+.. .. ++++.++..+-||..
T Consensus 16 ~~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~PpVsGG~~ 89 (168)
T 1v8c_A 16 SQLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPPVAGGGF 89 (168)
T ss_dssp SEEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEECSCCSEEE
T ss_pred CeEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEECccccccc
Confidence 3556665 899999999876521 10 123457788888765221111 12 788888888777754
No 182
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=29.24 E-value=24 Score=24.57 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=27.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCCh-hhhcC
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSI-SDLES 108 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL-~dy~~ 108 (168)
+-+..++.+....|++.|++..++++++ +.++..| .++|.
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~~---------I~~d~~l~~dLGl 58 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDADK---------VTEDASFKDDLGA 58 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGGG---------CCTTCBTTTTSCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChhh---------CCCCCcchhhcCC
Confidence 4467778889999999999999987653 4666667 77773
No 183
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=28.54 E-value=92 Score=22.59 Aligned_cols=79 Identities=10% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCccccccceeEEEeeCCceEEEEEc-CC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe--ecCCCCChhh
Q psy2142 31 KASFGTKFDVAVITMIENMKRIIVRG-QS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK--TLTDDLSISD 105 (168)
Q Consensus 31 ~~sf~~~~~~~~~~~~~~~MQIfVR~-~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK--~LeD~~tL~d 105 (168)
+||..++.++. ++.+.-+.+.. +. ...|...|+-++.++-.=|-...|+..++..+...|. +|+-..+++.
T Consensus 2 ~SsiL~~qEVr----lE~Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~ 77 (104)
T 1wfy_A 2 SSGSSGDQEVR----LENRITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSS 77 (104)
T ss_dssp CCCCCCCCCCC----CCSCEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGG
T ss_pred ccccccCceEE----EEeeEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhh
Confidence 46677777776 56666666655 44 3667888999999999889999999998887776664 5555666766
Q ss_pred hcCCccce
Q psy2142 106 LESGSIEI 113 (168)
Q Consensus 106 y~~sTL~L 113 (168)
..+..+.+
T Consensus 78 ldgqrl~L 85 (104)
T 1wfy_A 78 VASQTLVL 85 (104)
T ss_dssp SSSSCEEE
T ss_pred hcCcEEEE
Confidence 66554443
No 184
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=27.61 E-value=1.5e+02 Score=20.30 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=38.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE------cC-e-ecCCCCChhhhcCCccce
Q psy2142 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLIC------SG-K-TLTDDLSISDLESGSIEI 113 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy------~G-K-~LeD~~tL~dy~~sTL~L 113 (168)
.+++|.|+.|+.+-=.++-+.-|+.++. +-+| .| + +++.+..++.+.+..|.+
T Consensus 14 T~V~VrpG~tlrdaL~KaLk~R~L~pe~-C~V~~~~~~~~~~~~~i~WdtD~~~L~~eEl~V 74 (77)
T 1c1y_B 14 TVVNVRNGMSLHDCLMKALKVRGLQPEC-CAVFRLLHEHKGKKARLDWNTDAASLIGEELQV 74 (77)
T ss_dssp EEEECCTTCBHHHHHHHHHHTTTCCGGG-EEEEEEEGGGSSEEEEECTTSBGGGGTTCEEEE
T ss_pred EEEEecCCcCHHHHHHHHHHHcCCCHHH-eEEEEeccCCCCCccccchhHhhhhccCceEEE
Confidence 5689999999999999999999998854 4445 24 2 556666677665444443
No 185
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=27.46 E-value=62 Score=21.73 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=25.0
Q ss_pred EEEEEcCCceEEEEcCCCCHHHHHHHHhh
Q psy2142 51 RIIVRGQSNYVLECQQNETVSHLKNKVAS 79 (168)
Q Consensus 51 QIfVR~~~~~tleV~~s~TV~~LK~kI~~ 79 (168)
+|+|-+++|-.+++....|+.++=..|..
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~ 35 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYAIHS 35 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHHHCH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHHhhh
Confidence 57888899989999999999999777754
No 186
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=26.51 E-value=60 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=28.2
Q ss_pred EEeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCC
Q psy2142 43 ITMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVA 84 (168)
Q Consensus 43 ~~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp 84 (168)
++....+.+|.+...++ .++++.+++||.+.=. ..||+
T Consensus 15 ~~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~----~~gi~ 54 (126)
T 3hui_A 15 VPRGSHMAKINFVDHTGETRTVEVEEGATVMEAAI----RNAIP 54 (126)
T ss_dssp CCTTCSEEEEEEECTTSCEEEEEEETTSBHHHHHH----TTTCT
T ss_pred cCCCCCceEEEEEeCCCCEEEEEECCCCcHHHHHH----HcCCC
Confidence 34446677999987777 8999999999987532 45665
No 187
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=25.90 E-value=73 Score=23.72 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=43.8
Q ss_pred ceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCChhhhcCCccceEEE
Q psy2142 49 MKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLIC--SGKTLTDDLSISDLESGSIEIFVP 116 (168)
Q Consensus 49 ~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy--~GK~LeD~~tL~dy~~sTL~Lvvr 116 (168)
.=.+.|++.+. .-.-|..+ +..+|+.+..+..++. +.-.|.. .|..++|++-+..+...|..+++.
T Consensus 35 ~kPfKV~~~~Rs~k~GV~A~-SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~ 103 (122)
T 1d4b_A 35 QRPFRVCDHKRTIRKGLTAA-TRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQ 103 (122)
T ss_dssp CEEEEEECSSSSCEEEEEEC-CSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHSSSCCCCCEEC
T ss_pred CCCEEEecCCCCeEEeEEcC-CHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcCCCCCEEEEec
Confidence 34566776643 33333322 7889999998888884 3444444 699999887766666777766653
No 188
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.67 E-value=54 Score=24.60 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=21.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhh-c---CCCCC
Q psy2142 60 YVLECQQNETVSHLKNKVASL-E---KVALE 86 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~-e---GIp~~ 86 (168)
+.+.|-..|||.++|++|-+. . |.|.+
T Consensus 41 v~VkVLdCDTItQVKEKILdavYk~k~~pys 71 (126)
T 3kuz_A 41 ISVNVLDCDTIGQAKEKIFQAFLSKNGSPYG 71 (126)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHHHHHSSCCS
T ss_pred eEeeeecCCcHHHHHHHHHHHHhccCCCcCC
Confidence 677888999999999998776 3 66543
No 189
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=25.46 E-value=87 Score=21.94 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCe-EEEEcCee
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDF-SLICSGKT 96 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q-~Liy~GK~ 96 (168)
+.+++.|++..|=.++|+.|+...++.+..- .|+..|+.
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 4589999999999999999999999988764 34556654
No 190
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=24.42 E-value=95 Score=20.47 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=20.4
Q ss_pred eEEEEEcCCc-eEEEEcCCCCHHHHHH
Q psy2142 50 KRIIVRGQSN-YVLECQQNETVSHLKN 75 (168)
Q Consensus 50 MQIfVR~~~~-~tleV~~s~TV~~LK~ 75 (168)
.+|.|...++ .++++.+++||.+.=.
T Consensus 2 ~~v~~~~~~g~~~~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 2 YKTVLKTPSGEFTLDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEEETTEEEEEEECTTCCHHHHHH
T ss_pred eEEEEEeCCCcEEEEeCCCCcHHHHHH
Confidence 4567766676 8999999999988644
No 191
>3r3p_A MobIle intron protein; homing endonuclease, hydrolase; 2.20A {Bacillus phage 0305phi8-36}
Probab=24.00 E-value=17 Score=25.87 Aligned_cols=15 Identities=20% Similarity=0.373 Sum_probs=12.9
Q ss_pred hhhcccceeeeccCC
Q psy2142 8 RLAHSIELCTWHLNP 22 (168)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (168)
++|--.|||.||..+
T Consensus 41 rl~IevDG~~wH~~~ 55 (105)
T 3r3p_A 41 KLAIEVNGVYWASKQ 55 (105)
T ss_dssp TEEEEEECSCCTTCC
T ss_pred CEEEEecCcccCCCc
Confidence 677788999999876
No 192
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=23.96 E-value=1.8e+02 Score=20.11 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=38.8
Q ss_pred CceEEEEEcCCc-eEEEEcC-CCCHHHHHHHHhhh----cCCCCCCe----EEEE-cCeecCCCCChhhhc
Q psy2142 48 NMKRIIVRGQSN-YVLECQQ-NETVSHLKNKVASL----EKVALEDF----SLIC-SGKTLTDDLSISDLE 107 (168)
Q Consensus 48 ~~MQIfVR~~~~-~tleV~~-s~TV~~LK~kI~~~----eGIp~~~Q----~Liy-~GK~LeD~~tL~dy~ 107 (168)
+.|+|.|+.... +.+-+.+ ..||..|=++-..+ .+-.++.- .|-+ +|-+|+.++.|.+.-
T Consensus 1 ~~MKvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dVl 71 (85)
T 2ns5_A 1 SEFKVTVCFGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDVA 71 (85)
T ss_dssp CCEEEEEEETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHHS
T ss_pred CccEEEEEECCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhhc
Confidence 469999998754 6777744 44999887664433 23323222 2334 888998888888864
No 193
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}
Probab=23.75 E-value=66 Score=26.60 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=32.9
Q ss_pred eEEEEEcCCceEEEEcCCCCH-------HHHHHHHhhhcCCCCCCeEEE
Q psy2142 50 KRIIVRGQSNYVLECQQNETV-------SHLKNKVASLEKVALEDFSLI 91 (168)
Q Consensus 50 MQIfVR~~~~~tleV~~s~TV-------~~LK~kI~~~eGIp~~~Q~Li 91 (168)
+||+|.+.++..|+|+|+.-| ..|.+++-....|+++...|+
T Consensus 105 L~VYIHT~~~~lI~V~P~~RiPRty~RF~GLM~qLL~k~~I~~~~~~LL 153 (244)
T 3o7b_A 105 FEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITAGDTTLI 153 (244)
T ss_dssp EEEEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEETTEEEE
T ss_pred eEEEEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhhCcCCCCCCeeE
Confidence 999999999999999999855 566677776666776665554
No 194
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=23.13 E-value=84 Score=22.21 Aligned_cols=35 Identities=0% Similarity=0.107 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc
Q psy2142 59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICS 93 (168)
Q Consensus 59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~ 93 (168)
...++|+++.|..+|-+.+.+...+....=.|.++
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~ 40 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITAT 40 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeee
Confidence 46789999999999999999865443333335444
No 195
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=23.06 E-value=38 Score=26.01 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=33.9
Q ss_pred CCHHHHHHHHhhhcCCCCC--CeEEE--EcCeecCCCCChhhhcCCccceEE
Q psy2142 68 ETVSHLKNKVASLEKVALE--DFSLI--CSGKTLTDDLSISDLESGSIEIFV 115 (168)
Q Consensus 68 ~TV~~LK~kI~~~eGIp~~--~Q~Li--y~GK~LeD~~tL~dy~~sTL~Lvv 115 (168)
.+..+|+.+..+..+++.. ..+|. ..|..++|+.-+..+...|+.+++
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp~nT~LmvL 133 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVAL 133 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSCSSCBEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCCCCCEEEEE
Confidence 3899999999999999653 44444 468888777655555566666655
No 196
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=22.77 E-value=1.7e+02 Score=19.22 Aligned_cols=50 Identities=28% Similarity=0.386 Sum_probs=39.5
Q ss_pred eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCCh
Q psy2142 50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSI 103 (168)
Q Consensus 50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL 103 (168)
|-+.||.++. .++|.....-.++|-..+++ .|+ ...|--.|+.|.....|
T Consensus 1 mlvivrlqdq~lpfelpaga~asqls~lls~-~gm---~fslhtqgrvlseaael 51 (69)
T 2jx5_A 1 MLVIVRLQDQTLPFELPAGARASQLSNLLSS-SGM---AFSLHTQGRVLSEAAEL 51 (69)
T ss_dssp CEEEEEETTEEEEEECCTTCCHHHHHHHHHH-SSC---CCEEEETTEECCTTCCC
T ss_pred CeEEEEeccccccccccccccHHHHHHHHhh-cCc---eEEEeecchhhhhHHhh
Confidence 6688998875 88999999999999888775 454 56688899999775543
No 197
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=22.44 E-value=82 Score=26.18 Aligned_cols=40 Identities=8% Similarity=0.094 Sum_probs=31.7
Q ss_pred CCceEEEEEcCCceEEEEcCCCCH-------HHHHHHHhhhcCCCCC
Q psy2142 47 ENMKRIIVRGQSNYVLECQQNETV-------SHLKNKVASLEKVALE 86 (168)
Q Consensus 47 ~~~MQIfVR~~~~~tleV~~s~TV-------~~LK~kI~~~eGIp~~ 86 (168)
+..+||+|++.++..|+|+|..-| ..|.+++-....|++.
T Consensus 108 ~G~L~VYIhT~~~~lIeV~P~~RiPRty~rF~GLM~qLL~k~~I~~~ 154 (253)
T 3oii_A 108 AGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSV 154 (253)
T ss_dssp TTCEEEEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEET
T ss_pred cCceEEEEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhcCcccCC
Confidence 466999999999999999999865 5666777766667643
No 198
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=22.32 E-value=2e+02 Score=20.01 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=39.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhh-cCC----CCCCeEEEEcCee--cCCCCChhhhc
Q psy2142 60 YVLECQQNETVSHLKNKVASL-EKV----ALEDFSLICSGKT--LTDDLSISDLE 107 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~-eGI----p~~~Q~Liy~GK~--LeD~~tL~dy~ 107 (168)
.-+.|+.++|+.++=++++.. .|. -+.-.++.++|.. |.++.|+++-|
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaG 71 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESG 71 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHC
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccC
Confidence 457899999999999998865 353 2237889999999 99999999998
No 199
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=20.52 E-value=1.3e+02 Score=20.25 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=31.0
Q ss_pred hhhcCCCCCCeEEEEcCeecCCCCChhhh----c-CCccceEEEecCCc
Q psy2142 78 ASLEKVALEDFSLICSGKTLTDDLSISDL----E-SGSIEIFVPLLGGK 121 (168)
Q Consensus 78 ~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy----~-~sTL~LvvrllGGK 121 (168)
++..|+.+.+..+-.+|+++.+...+.++ . +.++.+.+ .++|.
T Consensus 50 A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v-~R~g~ 97 (105)
T 2i4s_A 50 FESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV-ERDGQ 97 (105)
T ss_dssp HHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEE-EETTE
T ss_pred HHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEE-EECCE
Confidence 34569999999999999999887665442 2 56677666 35654
No 200
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=20.44 E-value=1e+02 Score=21.61 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCHHHHHHHHhhhcCCCCCCe
Q psy2142 58 SNYVLECQQNETVSHLKNKVASLEKVALEDF 88 (168)
Q Consensus 58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q 88 (168)
+.+++.|++..|=.++|+.|+...++.+..-
T Consensus 23 n~y~F~V~~~anK~eIK~aVE~lf~VkV~~V 53 (95)
T 2zjr_Q 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGI 53 (95)
T ss_dssp TCCEEEECSSCTHHHHHHHHHHHHCCCCSEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCceEE
Confidence 3489999999999999999999999988764
No 201
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=20.28 E-value=16 Score=28.07 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.5
Q ss_pred hhhcccceeeeccC
Q psy2142 8 RLAHSIELCTWHLN 21 (168)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (168)
++|--.|||.||.-
T Consensus 57 rlvIfVdGcfWHgH 70 (155)
T 1cw0_A 57 RCVIFTHGCFWHHH 70 (155)
T ss_dssp TEEEEEECTTTTTC
T ss_pred CEEEEEeChhhccC
Confidence 56777899999974
No 202
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=20.09 E-value=2.3e+02 Score=19.70 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=38.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhh-cCC-----CCCCeEEEEcC--eecCCCCChhhhc
Q psy2142 60 YVLECQQNETVSHLKNKVASL-EKV-----ALEDFSLICSG--KTLTDDLSISDLE 107 (168)
Q Consensus 60 ~tleV~~s~TV~~LK~kI~~~-eGI-----p~~~Q~Liy~G--K~LeD~~tL~dy~ 107 (168)
.-+.|+.++|+.++=++++.. .|. |..-.++.++| ..|..+.|+++-+
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~g 70 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAG 70 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSC
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccC
Confidence 457899999999999998865 342 22347888999 9999999999988
No 203
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=20.05 E-value=2.3e+02 Score=26.01 Aligned_cols=46 Identities=20% Similarity=0.056 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCC-CCCeEEEE
Q psy2142 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVA-LEDFSLIC 92 (168)
Q Consensus 47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp-~~~Q~Liy 92 (168)
...|.+.|..+++ .+++|++..|+.+|=+.|....|+. .+..-|.+
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 3568888998876 7799999999999999999999874 34455554
No 204
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli} SCOP: c.52.1.15 PDB: 1odg_A*
Probab=20.01 E-value=17 Score=27.41 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.5
Q ss_pred hhhcccceeeeccC
Q psy2142 8 RLAHSIELCTWHLN 21 (168)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (168)
|+|--.|||.||.-
T Consensus 38 rlvIfvdGcfWHgH 51 (136)
T 1vsr_A 38 RCVIFTHGCFWHHH 51 (136)
T ss_dssp TEEEEEECTTTTTC
T ss_pred CEEEEEeCccccCC
Confidence 56777899999974
Done!