RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2142
(168 letters)
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 42.1 bits (99), Expect = 1e-06
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 48 NMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDL 106
++ I GQ + + TV K + + + + LI SGK L DD ++
Sbjct: 1 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 59
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 41.8 bits (98), Expect = 3e-06
Identities = 11/53 (20%), Positives = 24/53 (45%)
Query: 53 IVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
I R ++ + +++ TV LK V + K ++ L + L D ++ +
Sbjct: 6 IRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGE 58
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 38.3 bits (89), Expect = 3e-05
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSIS 104
E + I+VR E + +TV+HLK +V+ LE V + F L GK L D L +
Sbjct: 2 EPLS-ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLG 60
Query: 105 D--LESGSI 111
+ L+ S
Sbjct: 61 EYGLKPLST 69
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 37.5 bits (87), Expect = 9e-05
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 57 QSNYVLECQQNETVSHLKNKVASL--EKVALEDFSLICSGKTLTDDLSISDL 106
+ L + +V HLK ++ + E+ ED LI SGK L D + DL
Sbjct: 19 HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDL 70
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 36.8 bits (85), Expect = 1e-04
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD- 105
M+ I V+ + LE + ++T+ ++K K+ E + + LI +GK L D ++SD
Sbjct: 1 MQ-IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Query: 106 -LESGS-IEIFVPLLGG 120
++ S + + + L GG
Sbjct: 60 NIQKESTLHLVLRLRGG 76
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 36.4 bits (84), Expect = 1e-04
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 51 RIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
++V+ V K +A+ + E LI G+ L DD + +
Sbjct: 2 EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 58
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 36.0 bits (83), Expect = 2e-04
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGSI 111
V + VS +K K+ + L G + D S++ + +G++
Sbjct: 24 LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAV 77
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 36.0 bits (83), Expect = 2e-04
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 51 RIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--L 106
+ VR S+ + +E + ++ LK VA + V + +I +GK L + L++ + L
Sbjct: 4 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDL 63
Query: 107 ESGSI 111
E SI
Sbjct: 64 EQQSI 68
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 73
Score = 34.5 bits (79), Expect = 8e-04
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 49 MKRIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD- 105
M I V+ ++ + +T+ +K +V E + LI +GK L DD + D
Sbjct: 1 ML-IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY 59
Query: 106 -LESGSI 111
+E GS+
Sbjct: 60 NIEGGSV 66
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 35.0 bits (80), Expect = 0.001
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 47 ENMKRIIVR-GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
+ ++ V+ + +N +V K ++ K + LI +GK L D ++
Sbjct: 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQ 89
Query: 106 --LESGSI 111
+ G
Sbjct: 90 HGIHDGLT 97
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 33.8 bits (77), Expect = 0.002
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 51 RIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLIC---SGKTLTDDLSISD 105
IIV+ GQ V +++TV LK + +L V E L+ GK +D+ +
Sbjct: 9 PIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGA 68
Query: 106 L 106
L
Sbjct: 69 L 69
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A
(Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 33.3 bits (76), Expect = 0.002
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 52 IIVR--GQSNYVLECQQNETVSHLKNKVAS---LEKVALEDFSLICSGKTLTDDLSISD- 105
I ++ Q + + + +ETV LK K+ + + + LI +GK L+DD+ I D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 106 -LESGSIEIFV 115
++ + + +
Sbjct: 65 RIDEKNFVVVM 75
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein,
OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 33.0 bits (75), Expect = 0.003
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 51 RIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--L 106
++ V+ +Y N + LK ++ + + + L G+ L D L + +
Sbjct: 9 QVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGI 68
Query: 107 ESGS-IEIFVPLLGGK 121
+ + + G
Sbjct: 69 QDSDTLILSKKKGSGP 84
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 31.8 bits (72), Expect = 0.008
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 33 SFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLIC 92
S G+ D E + I+ ++ + ++ + T S LK K+ S+ + ++
Sbjct: 2 SSGSSGDAGGGVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY 61
Query: 93 SGKTLTDDLSISDL 106
+ +D ++ ++
Sbjct: 62 -KGLVPEDKTLREI 74
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 31.9 bits (72), Expect = 0.009
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 49 MKRIIVR--GQSNYVLECQQNETVSHLKNKVAS---LEKVALEDFSLICSGKTLTDDLSI 103
M+ + ++ Q + ++ ETV LK K+ S + + LI +GK L DD ++
Sbjct: 1 MQ-VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTAL 59
Query: 104 SD 105
+
Sbjct: 60 KE 61
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 31.4 bits (71), Expect = 0.013
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 67 NETVSHLKNKVA---SLEKVALEDFSLICSGKTLTDDLSISD--LESGSI 111
++S LK +A E LI G+ L DD ++ ++ GS
Sbjct: 37 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGST 86
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 31.1 bits (70), Expect = 0.019
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 47 ENMKRIIVRGQ--SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSIS 104
M ++ + ++C ++T+ LK +A+ L D +S+
Sbjct: 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLG 85
Query: 105 D 105
D
Sbjct: 86 D 86
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 100
Score = 30.3 bits (68), Expect = 0.040
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
+LE + + T L++K+A + ++ + K L ++ +
Sbjct: 32 NLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 29.5 bits (66), Expect = 0.052
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 51 RIIVR----GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
I VR ++ + + + T+ L+ +V +L V E L GK L + ++ D
Sbjct: 2 WIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 29.1 bits (65), Expect = 0.076
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 56 GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLTDDLSISD--LESGSI 111
+ + + + +VS LK ++ V L SG L D + ++ L GS
Sbjct: 9 AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGST 68
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 83
Score = 28.4 bits (63), Expect = 0.15
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 47 ENMKRIIVR-GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
+ R+ V+ Q + +N V K +++ + LI +GK L D +S
Sbjct: 8 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQ 67
Query: 106 L 106
Sbjct: 68 R 68
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 28.4 bits (63), Expect = 0.18
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 51 RIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD-LSISDLE 107
+ V+ + +E +E K ++ +L V ++ G TL DD ++
Sbjct: 9 SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGNIKMK 68
Query: 108 SGS 110
+G
Sbjct: 69 NGM 71
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 28.0 bits (62), Expect = 0.24
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 48 NMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFS-------LICSGKTLTDD 100
+K + G TVS LK V S E+ LI +GK L +
Sbjct: 9 EIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENS 68
Query: 101 LSISD 105
++ D
Sbjct: 69 KTVKD 73
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 27.5 bits (61), Expect = 0.25
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 62 LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT-DDLSISDL 106
+ V L V + V LI GK+L + +S L
Sbjct: 20 QQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSAL 65
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 28.1 bits (62), Expect = 0.27
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD---LSISDLESGSIEIFVP 116
+ L+ + +S+ + V E+ ++ + LTDD L L+ G + + +
Sbjct: 24 FSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83
Query: 117 LLGG 120
Sbjct: 84 KDNV 87
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 26.8 bits (59), Expect = 0.45
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 49 MKRIIVR---GQSNYVLEC-QQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSIS 104
M I VR G+ + ++ + V L+ K+ L V L GK + D ++
Sbjct: 1 MW-IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLF 59
Query: 105 D 105
D
Sbjct: 60 D 60
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 26.0 bits (57), Expect = 1.2
Identities = 7/56 (12%), Positives = 20/56 (35%)
Query: 57 QSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIE 112
+ + + TV +K ++ L KV + + L + + + ++
Sbjct: 22 RQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 25.7 bits (56), Expect = 1.4
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 51 RIIVR-GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDL 106
++ V+ + T+ LK +++ K + LI +GK L D S++
Sbjct: 9 KVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC 65
>d1o75a1 b.1.20.1 (A:207-332) Tp47 lipoprotein, middle and
C-terminal domains {Treponema pallidum [TaxId: 160]}
Length = 126
Score = 25.5 bits (55), Expect = 2.6
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 1 MSNTELIRLAHSIELCTWHLNPVTSTYYLSKASFGTKF 38
+S+ E I + + ++Y AS+GTK
Sbjct: 37 LSHREFIDYVMNFNTVRYDYYGDDASYTNLMASYGTKH 74
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 73
Score = 24.6 bits (53), Expect = 2.7
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 49 MKRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
M ++V + ++C ++V K ++ L G L D +S+ D
Sbjct: 1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLED 59
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 24.5 bits (53), Expect = 3.7
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 57 QSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD---LSISDLESGSI 111
+ + + +TV LK+K LI G+ L D LS ++ + +
Sbjct: 17 DTEELAVARPEDTVGTLKSKY---FPGQESQMKLIYQGRLLQDPARTLSSLNITNNCV 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.364
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 583,229
Number of extensions: 24954
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 34
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)