Query psy2143
Match_columns 149
No_of_seqs 181 out of 878
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 17:08:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_P 40S ribosomal protein S 100.0 3.7E-49 1.3E-53 307.2 8.8 108 42-149 1-108 (142)
2 2xzm_S RPS15E; ribosome, trans 100.0 2.1E-45 7.2E-50 286.6 6.8 101 49-149 4-113 (144)
3 3iz6_R 40S ribosomal protein S 100.0 5.3E-48 1.8E-52 304.0 -9.4 111 39-149 5-117 (154)
4 3j20_T 30S ribosomal protein S 100.0 1.5E-41 5E-46 261.8 5.4 92 54-149 4-95 (132)
5 3r8n_S 30S ribosomal protein S 99.9 1.4E-24 4.7E-29 154.6 4.6 61 84-149 1-61 (79)
6 3a1p_B 30S ribosomal protein S 99.9 5E-24 1.7E-28 155.8 6.3 61 84-149 3-63 (93)
7 3bbn_S Ribosomal protein S19; 99.9 4.8E-24 1.6E-28 155.5 5.5 61 84-149 3-63 (92)
8 3i1m_S 30S ribosomal protein S 99.9 6.2E-24 2.1E-28 155.0 5.0 62 83-149 2-63 (92)
9 3a5t_A Transcription factor MA 84.6 0.58 2E-05 34.5 2.7 36 60-104 7-42 (107)
10 1skn_P DNA-binding domain of S 81.2 1.4 4.6E-05 32.1 3.4 38 60-104 30-67 (92)
11 2kz5_A Transcription factor NF 76.7 1.9 6.6E-05 31.2 3.0 38 60-104 34-71 (91)
12 1a59_A Citrate synthase; cold- 74.6 1.6 5.6E-05 37.4 2.6 47 14-78 5-52 (378)
13 1iom_A Citrate synthase; open 73.0 1.7 5.9E-05 37.4 2.4 47 14-78 3-50 (377)
14 1vgm_A 378AA long hypothetical 71.2 1.4 4.7E-05 38.0 1.3 50 11-78 2-52 (378)
15 1vgp_A 373AA long hypothetical 69.9 2.2 7.4E-05 36.6 2.3 47 14-78 3-50 (373)
16 2p2w_A Citrate synthase; trans 69.2 2.3 7.8E-05 36.5 2.3 46 15-78 3-49 (367)
17 2lz1_A Nuclear factor erythroi 69.1 3.9 0.00013 29.6 3.1 40 60-106 34-73 (90)
18 1aj8_A Citrate synthase; hyper 66.9 1.8 6.3E-05 37.1 1.2 45 16-78 3-48 (371)
19 2wt7_B Transcription factor MA 66.3 2.2 7.6E-05 30.6 1.4 32 64-104 1-32 (90)
20 2c6x_A Citrate synthase 1; tri 64.1 2.6 8.8E-05 36.2 1.6 46 15-78 2-48 (363)
21 2ifc_A Citrate synthase; oxalo 62.9 2.9 9.8E-05 36.1 1.7 47 14-78 7-55 (385)
22 3o8j_A 2-methylcitrate synthas 61.4 3.1 0.00011 36.3 1.7 24 55-78 56-80 (404)
23 3tqg_A 2-methylcitrate synthas 60.2 3.3 0.00011 35.8 1.6 48 13-78 6-54 (375)
24 2ibp_A Citrate synthase; disul 58.2 3.9 0.00013 35.6 1.7 47 14-78 22-69 (409)
25 1o7x_A Citrate synthase; lyase 55.5 4.6 0.00016 34.7 1.7 47 14-78 4-51 (377)
26 2e8m_A Epidermal growth factor 51.5 9.2 0.00032 27.9 2.5 73 8-84 3-81 (99)
27 3hwk_A Methylcitrate synthase; 50.8 6 0.00021 34.7 1.7 24 55-78 72-96 (414)
28 3msu_A Citrate synthase; helix 48.0 6.2 0.00021 34.7 1.3 24 55-78 74-98 (427)
29 3l96_A Citrate synthase; quate 47.6 6.3 0.00021 34.6 1.3 24 55-78 65-89 (426)
30 2h12_A Citrate synthase; acido 46.6 7.6 0.00026 34.1 1.7 24 55-78 73-97 (436)
31 2a1j_A DNA repair endonuclease 43.9 13 0.00044 23.9 2.1 25 62-86 26-51 (63)
32 1z00_B DNA repair endonuclease 42.8 11 0.00037 26.0 1.7 30 62-91 40-70 (84)
33 1wwu_A Hypothetical protein FL 41.7 19 0.00067 26.1 3.0 48 38-85 20-73 (99)
34 1csh_A Citrate synthase; lyase 41.6 6.8 0.00023 34.4 0.6 23 56-78 62-94 (435)
35 2lpe_A Kinase suppressor of RA 39.5 15 0.0005 28.6 2.1 20 60-79 106-125 (149)
36 1a62_A RHO; transcription term 26.8 1.7E+02 0.0057 21.3 6.0 42 62-106 2-43 (130)
37 1awc_A Protein (GA binding pro 24.1 49 0.0017 24.3 2.6 33 54-86 74-107 (110)
38 1j2m_A CPI-17, 17-kDa PKC-pote 23.8 22 0.00076 25.9 0.7 14 60-73 53-66 (99)
39 1dxs_A P53-like transcription 23.4 17 0.00058 25.7 0.0 30 62-91 32-62 (80)
40 2kso_A Ephrin type-A receptor 22.1 51 0.0017 22.0 2.2 24 54-77 33-57 (82)
41 2f3j_A RNA and export factor b 21.7 31 0.0011 25.5 1.2 23 55-77 7-29 (177)
42 1ucv_A Ephrin type-A receptor 20.1 60 0.0021 21.4 2.2 25 53-77 23-48 (81)
No 1
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=100.00 E-value=3.7e-49 Score=307.22 Aligned_cols=108 Identities=59% Similarity=0.988 Sum_probs=99.6
Q ss_pred chhHHhhcccceeeeEEecCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEecc
Q psy2143 42 TVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHL 121 (149)
Q Consensus 42 ~~~~~~~kkrtfkkFtYRG~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThs 121 (149)
|||++++|||+|++|+|||+|||||++||+|||++|+||||||+|+|||.++|.+||++||+|+++++++++|++|+||+
T Consensus 1 m~~~~~~kkrtf~kFtyrG~~ld~Ll~ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrkak~~~~~~~k~~~ikT~s 80 (142)
T 3u5c_P 1 MSQAVNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHM 80 (142)
T ss_dssp -------CCCCCCCCBSSSCBHHHHHTTCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHHHHHSCSSSCCCCEEECC
T ss_pred CcccccccccceeeEEEccccHHHHHcCCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHHhhhcCcccCCcceEeec
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCcccceEEEeeCCceeeEeeC
Q psy2143 122 RNMIIVPEMVGSVVGVYNGKTFNQVEIK 149 (149)
Q Consensus 122 R~siIlPemVG~tv~VyNGK~Fv~V~Ik 149 (149)
|+|+|+|+|||++|+|||||+|++|+|+
T Consensus 81 R~s~IlP~mVG~ti~VyNGK~f~~V~It 108 (142)
T 3u5c_P 81 RNMIIVPEMIGSVVGIYNGKAFNQVEIR 108 (142)
T ss_dssp TTCBCCGGGTTCEEEEESSSSEEEEECC
T ss_pred cCCEeChhHCCCEEEEEcCCeeEEEecc
Confidence 9999999999999999999999999996
No 2
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=100.00 E-value=2.1e-45 Score=286.61 Aligned_cols=101 Identities=48% Similarity=0.861 Sum_probs=91.6
Q ss_pred cccceeeeEEecCCchHhhC---------CChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEe
Q psy2143 49 KKRTFRKFTFRGVDLDQLLD---------MPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKT 119 (149)
Q Consensus 49 kkrtfkkFtYRG~~leeL~~---------Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKT 119 (149)
|||+|++|+|||+|||||++ |++|||++|+|||||||+||||+.++.+||+||++++++++.++||++|||
T Consensus 4 ~k~~~~kftyrG~~l~~L~~~~~~~~~~~m~~~~~~~l~~ar~RRSlkKGpfv~~~~LLkKi~k~~~~~~~~~k~~vIKT 83 (144)
T 2xzm_S 4 NKKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKT 83 (144)
T ss_dssp -------CCCCTTCHHHHHHHHSSTTCCSSSCHHHHHHSCHHHHHHHHHHCCSHHHHHHHHHHHHHHHSCTTTCCCCEEE
T ss_pred cccceeeeeecCCcHHHHHhhhcccccccCCHHHHHHHhchhhhhhhhCCCCcccHHHHHHHHHHhhhhhccCCCceEEE
Confidence 56899999999999999999 999999999999999999999999899999999999998888888899999
Q ss_pred ccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143 120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149 (149)
Q Consensus 120 hsR~siIlPemVG~tv~VyNGK~Fv~V~Ik 149 (149)
|+|+|+|+|+|||++|+|||||+|++|+|+
T Consensus 84 wsR~stIlPemVG~ti~VyNGK~fvpV~It 113 (144)
T 2xzm_S 84 HYRSMIVIPELVGGIVGVYNGKEFVNVEVK 113 (144)
T ss_dssp CCTTCBCCGGGTTCEEEEECSSSEEEEECC
T ss_pred eccCcCcCHhHCCcEEEEecCCeeeeeeec
Confidence 999999999999999999999999999996
No 3
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=100.00 E-value=5.3e-48 Score=303.98 Aligned_cols=111 Identities=73% Similarity=1.137 Sum_probs=57.8
Q ss_pred cccc--hhHHhhcccceeeeEEecCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCce
Q psy2143 39 NFST--VEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEV 116 (149)
Q Consensus 39 ~~~~--~~~~~~kkrtfkkFtYRG~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~ 116 (149)
|+++ +.++++|||+|++|+|||+|||||++||+|||++||||||||+|+|||.++|.+||++||+++++++++++|++
T Consensus 5 ~~~~~~~~~~~~kkrtf~kFtYrG~~ld~Ll~ms~eel~~L~~aR~RR~l~RGl~~k~~~Llkklrkak~~~~~~~k~~~ 84 (154)
T 3iz6_R 5 EVETEVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEP 84 (154)
T ss_dssp -----------------------------------------------------CCCCSCCCCSSCCSCCCSHHHHHTHHH
T ss_pred cchhHHHHHhhhcccceeeEEEecCcHHHHHhCCHHHHHHHccHHHhhhhhcCCCHHHHHHHHHHHHhhhccCcccCCce
Confidence 4553 34567889999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143 117 VKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149 (149)
Q Consensus 117 IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik 149 (149)
|+||+|+|+|+|+|||++|+|||||+|++|+|+
T Consensus 85 IkT~sR~s~IlPemVG~ti~VyNGK~f~~V~It 117 (154)
T 3iz6_R 85 VRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIK 117 (154)
T ss_dssp HHTCSCSCCCCCCCCCCCCGGGTTCCCEEESSS
T ss_pred eeecccCCEECHHHCCcEEEEEcCcceeeEEec
Confidence 999999999999999999999999999999985
No 4
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-41 Score=261.85 Aligned_cols=92 Identities=45% Similarity=0.728 Sum_probs=86.5
Q ss_pred eeeEEecCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccc
Q psy2143 54 RKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGS 133 (149)
Q Consensus 54 kkFtYRG~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~ 133 (149)
++|+|||+|||||++||+|||++|+|||||||++|||+..+.+||+||+++++++ +|++||||+|+|+|+|+|||+
T Consensus 4 ~kftyrG~~ld~L~~ms~~~l~~L~~ar~rRslkkG~~~~~~~LlkKi~k~~~~~----~~~~ikT~sR~s~IlP~mVG~ 79 (132)
T 3j20_T 4 KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGK----YKKPIRTHCRDMIILPEMVGL 79 (132)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHHHSCHHHHHHHHHCCCHHHHHHHHHHHHHSSSS----CCCCEEECCCSCBCCGGGTTC
T ss_pred cEEEEcCCcHHHHHcCCHHHHHHHhhHHHHHHhhcCCchhhHHHHHHHHHHHhcc----CCcceEecccCCEeChHHCCc
Confidence 6899999999999999999999999999999999999989999999999998764 578899999999999999999
Q ss_pred eEEEeeCCceeeEeeC
Q psy2143 134 VVGVYNGKTFNQVEIK 149 (149)
Q Consensus 134 tv~VyNGK~Fv~V~Ik 149 (149)
+|+|||||+|++|+|+
T Consensus 80 ti~VyNGK~f~~V~It 95 (132)
T 3j20_T 80 TIYVHNGKEFVPVEIK 95 (132)
T ss_dssp EEEEECSSSEEEEECC
T ss_pred EEEEECCCeeeeeecc
Confidence 9999999999999996
No 5
>3r8n_S 30S ribosomal protein S19; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_S 3fih_S* 3j18_S* 2wwl_S 3oar_S 3oaq_S 3ofb_S 3ofa_S 3ofp_S 3ofx_S 3ofy_S 3ofo_S 3r8o_S 4a2i_S 4gd1_S 4gd2_S 2gy9_S 2gyb_S
Probab=99.90 E-value=1.4e-24 Score=154.64 Aligned_cols=61 Identities=28% Similarity=0.432 Sum_probs=55.9
Q ss_pred hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143 84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149 (149)
Q Consensus 84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik 149 (149)
||+|||++.+ .+||+|++++++++ ++++||||+|+|+|+|+|||++|+|||||+|++|+|+
T Consensus 1 RS~~Kgpfv~-~~Llkki~k~~~~~----~~~~ikT~sR~stIlP~mVG~ti~VyNGk~f~~V~It 61 (79)
T 3r8n_S 1 RSLKKGPFID-LHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVT 61 (79)
T ss_dssp CCCCSCCCCC-HHHHHHHGGGTTSC----CCSCEECCCTTSBCCSTTTTCCEEEECSSSEECCCCC
T ss_pred CCcccCcCcC-HHHHHHHHHHHhcC----CCcceEEecCCCEECHHHCCCEEEEECCCeeEEEEec
Confidence 7999999976 99999999987642 4778999999999999999999999999999999985
No 6
>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...
Probab=99.89 E-value=5e-24 Score=155.77 Aligned_cols=61 Identities=34% Similarity=0.517 Sum_probs=50.3
Q ss_pred hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143 84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149 (149)
Q Consensus 84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik 149 (149)
||+|+|++. +.+||++|+++++. +++++|+||||+|+|+|+|||++|+|||||+|++|+|+
T Consensus 3 RS~~Kgpfv-~~~Llkki~~~~~~----~~~~~ikT~sR~stIlP~mVG~ti~VhNGK~fv~V~It 63 (93)
T 3a1p_B 3 RSLKKGVFV-DDHLLEKVLELNAK----GEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYIT 63 (93)
T ss_dssp ------CCC-CHHHHHHHHHHHHH----TCCCCEEECCSSSBCCGGGTTCEEEEECSSSEEEEECC
T ss_pred CccccCccc-CHHHHHHHHHHHhc----CCCcceEEEecCcCcChhhcCcEEEEecCceEEEEEec
Confidence 799999998 59999999998874 24788999999999999999999999999999999985
No 7
>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.89 E-value=4.8e-24 Score=155.52 Aligned_cols=61 Identities=25% Similarity=0.430 Sum_probs=55.3
Q ss_pred hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143 84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149 (149)
Q Consensus 84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik 149 (149)
||+|+|++ .+.+||++++++++. + ++++|+||||+|+|+|+|||++|+|||||+|++|+|+
T Consensus 3 RS~~Kgpf-v~~~Llkki~~~~~~---~-~~~~ikT~sR~stIlPemVG~ti~VhNGK~fv~V~It 63 (92)
T 3bbn_S 3 RSLKKNPF-VANHLLRKIEKLNKK---A-EKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYIT 63 (92)
T ss_dssp CSCSSCCC-CCHHHHHHHHTTTTT---T-CCCCEEECCCSCCCCTTCTTCCEEEECSSCEEEECCC
T ss_pred CccccCcc-cCHHHHHHHHHHHhc---C-CCcceEEEecCcccChhhcCcEEEEecCceEEEEEEe
Confidence 79999999 559999999988763 3 3788999999999999999999999999999999985
No 8
>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 4gaq_S* 4gas_S* 2qal_S* 1p6g_S ...
Probab=99.89 E-value=6.2e-24 Score=155.00 Aligned_cols=62 Identities=27% Similarity=0.420 Sum_probs=56.2
Q ss_pred hhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143 83 RRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149 (149)
Q Consensus 83 RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik 149 (149)
-||+|+|++.+ .+||++++++++++ ++++|+||+|+|+|||+|||++|+|||||+|++|+|+
T Consensus 2 ~RS~~KGpfv~-~~Llkki~k~~~~~----~~~~ikT~sR~stIlP~mVG~ti~VyNGK~fv~V~It 63 (92)
T 3i1m_S 2 PRSLKKGPFID-LHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVT 63 (92)
T ss_dssp -CCCCSSCCCC-HHHHHHHHHHHHTC----CCSCCEECCTTCBCCGGGSSCCCEEECSSSEEECCCC
T ss_pred CcccccCcCcC-HHHHHHHHHHHhcC----CCcceEEecCCCEechHHCCCEEEEEcCceEEEEEee
Confidence 37999999976 99999999998752 4678999999999999999999999999999999985
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=84.65 E-value=0.58 Score=34.53 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=31.2
Q ss_pred cCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHH
Q psy2143 60 GVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKA 104 (149)
Q Consensus 60 G~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrka 104 (149)
+++.|+|..||.+||-.+| +|++.++...|+.+|..
T Consensus 7 ~~sd~~Lv~m~v~elN~~L---------~~Ls~~e~~~lK~~RR~ 42 (107)
T 3a5t_A 7 SLTDEELVTMSVRELNQHL---------RGLSKEEIIQLKQRRRT 42 (107)
T ss_dssp CCCHHHHHHSCHHHHHHTT---------TTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHhcCCHHHHHHHH---------hCCCHHHHHHHHHHHHh
Confidence 5789999999999998876 58999999999998754
No 10
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=81.17 E-value=1.4 Score=32.11 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=32.3
Q ss_pred cCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHH
Q psy2143 60 GVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKA 104 (149)
Q Consensus 60 G~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrka 104 (149)
+++.||+.+||.+||-+++. ..||+..|..+++++|.-
T Consensus 30 Pfs~~eIv~lpv~efn~lLk-------~~~Ls~~Ql~~ir~~RRR 67 (92)
T 1skn_P 30 PVSAFQISEMSLSELQQVLK-------NESLSEYQRQLIRKIRRR 67 (92)
T ss_dssp SSCHHHHHHSCHHHHHHHHH-------HSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHHHH-------hCCCCHHHHHHHHHHHHH
Confidence 56899999999999987775 357999999999999854
No 11
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=76.68 E-value=1.9 Score=31.25 Aligned_cols=38 Identities=21% Similarity=0.491 Sum_probs=32.4
Q ss_pred cCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHH
Q psy2143 60 GVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKA 104 (149)
Q Consensus 60 G~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrka 104 (149)
.++.||+.+||.+||-+|+.. .||+..|..|+.++|.-
T Consensus 34 Pfs~~~Iv~lpv~efn~ll~~-------~~Ls~~Ql~lIrdiRRR 71 (91)
T 2kz5_A 34 PFPTDKIVNLPVDDFNELLAR-------YPLTESQLALVRDIRRR 71 (91)
T ss_dssp SSCHHHHHHSCHHHHHHHHHH-------SCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHHHHH-------cCCCHHHHHHHHHHHHH
Confidence 458899999999999887753 57999999999999854
No 12
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=74.60 E-value=1.6 Score=37.39 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=35.5
Q ss_pred cccccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC-CChHHHHHHh
Q psy2143 14 VPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
+..++.|++--++.|-.=.|+ =-...|||++++||.+ .++||++-||
T Consensus 5 ~~~Gl~gv~~~~t~Is~id~~------------------~G~L~YRGy~i~dLa~~~~fEeva~LL 52 (378)
T 1a59_A 5 IHKGLAGVTADVTAISKVNSD------------------TNSLLYRGYPVQELAAKCSFEQVAYLL 52 (378)
T ss_dssp CCGGGTTCCCCCCSSEEEETT------------------TTEEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred CCCccCCCeeeeeeceEEECC------------------CCeEEEcCccHHHHHhcCCHHHHHHHH
Confidence 557888888888877544443 1248899999999987 5789988774
No 13
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=73.03 E-value=1.7 Score=37.36 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=34.8
Q ss_pred cccccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC-CChHHHHHHh
Q psy2143 14 VPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
+..++.|++--++.|-.=.|+ =-...|||++++||.+ .++||++-||
T Consensus 3 ~~~Gl~gv~~~~t~Is~id~~------------------~G~L~YRGy~i~dLa~~~~fEeva~LL 50 (377)
T 1iom_A 3 VARGLEGVLFTESRMCYIDGQ------------------QGKLYYYGIPIQELAEKSSFEETTFLL 50 (377)
T ss_dssp CCGGGTTCCCSCCSSEEEETT------------------TTEEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred CCcccCCCeeeeeeCeEEECC------------------CCEEEEcCeeHHHHHccCCHHHHHHHH
Confidence 457788888888777544333 1248899999999987 5789988774
No 14
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=71.19 E-value=1.4 Score=38.00 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=36.0
Q ss_pred ccccccccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC-CChHHHHHHh
Q psy2143 11 SAVVPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
|-++..++.|++--++.|-.=.| .=-...|||++++||.+ -++||.+-||
T Consensus 2 ~~~~~~Gl~gv~~~~t~Is~id~------------------~~G~L~YRGy~i~dLa~~~~fEeva~LL 52 (378)
T 1vgm_A 2 SVEVSRGLENVIIKTTGLTYIDG------------------INGILRYRGYDINDLVNYASYEELIHLM 52 (378)
T ss_dssp -CCCSGGGTTCEEEEESSEEEET------------------TTTEEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred ccccCCccCCCeeeeeeceEEEC------------------CCCeEEEcCeeHHHHHhcCCHHHHHHHH
Confidence 34677888888887777754333 01248899999999988 4689988774
No 15
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=69.91 E-value=2.2 Score=36.65 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=34.2
Q ss_pred cccccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC-CChHHHHHHh
Q psy2143 14 VPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
+..++.||+--++.|-.=.|+ =-...|||++++||.+ .++||++-||
T Consensus 3 ~~~Gl~g~~~~~t~Is~id~~------------------~G~L~YRGy~i~~La~~~~fEeva~LL 50 (373)
T 1vgp_A 3 IKKGLEDVYVKETEITYIDGE------------------LGRLYYRGYSIYDLAEFSNFEEVSYLI 50 (373)
T ss_dssp CCTTCTTCCCCCCSSEEEETT------------------TTEEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred CCCccCCCeeeeeeCeEEECC------------------CCEEEEcCeeHHHHHccCCHHHHHHHH
Confidence 346777888777777544433 1248899999999987 5799988774
No 16
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=69.18 E-value=2.3 Score=36.47 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=33.4
Q ss_pred ccccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC-CChHHHHHHh
Q psy2143 15 PRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
..++.|++--++.|-.=.|+ =-...|||++++||.+ .++||.+-||
T Consensus 3 ~~Gl~g~~~~~T~Is~id~~------------------~G~L~YRGy~i~dLa~~~~feeva~LL 49 (367)
T 2p2w_A 3 QKGLEGVKICESSICYLDGI------------------NGRLYYRGIPVEELAEKSTFEETAYFL 49 (367)
T ss_dssp CTTCTTCCCCCCSSEEEETT------------------TTEEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred CCcCCCCeeeeeeCeEEECC------------------CCEEEECCeeHHHHHcCCCHHHHHHHH
Confidence 45777888777776543333 1248899999999987 6799988774
No 17
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=69.12 E-value=3.9 Score=29.56 Aligned_cols=40 Identities=18% Similarity=0.473 Sum_probs=33.4
Q ss_pred cCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhh
Q psy2143 60 GVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKK 106 (149)
Q Consensus 60 G~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk 106 (149)
.++.||+.+||.+||-+|+.. .+|+..|..|+..+|..-+
T Consensus 34 PFsvdqIvnLpv~eFn~lL~~-------~~Lt~~Ql~lIrdiRRRgK 73 (90)
T 2lz1_A 34 PFPVEKIINLPVVDFNEMMSK-------EQFNEAQLALIRDIRRRGK 73 (90)
T ss_dssp SSCHHHHHHSCHHHHHHHHHH-------SCCCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHCCHHHHHHHHHH-------cCCCHHHHHHHHHHHHhhh
Confidence 358999999999999888753 5799999999999997543
No 18
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=66.86 E-value=1.8 Score=37.11 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=31.1
Q ss_pred cccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC-CChHHHHHHh
Q psy2143 16 RCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
.++.||+--++.|-.=.|+ =-...|||++++||.+ .++||++-||
T Consensus 3 ~Gl~g~~~~~t~Is~id~~------------------~G~L~YRGy~i~~La~~~~fEeva~LL 48 (371)
T 1aj8_A 3 KGLEDVYIDQTNICYIDGK------------------EGKLYYRGYSVEELAELSTFEEVVYLL 48 (371)
T ss_dssp GGGTTCEEEEESSEEEETT------------------TTEEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred CCcCCCeeeeeeCeEEECC------------------CCEEEEcCccHHHHHccCCHHHHHHHH
Confidence 5666776666655433332 1248899999999987 5789988774
No 19
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=66.33 E-value=2.2 Score=30.57 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=27.1
Q ss_pred hHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHH
Q psy2143 64 DQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKA 104 (149)
Q Consensus 64 eeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrka 104 (149)
|+|..||..||-.++ +|++.++...|+..|..
T Consensus 1 deLv~msVreLN~~L---------~gls~eev~~lKq~RRt 32 (90)
T 2wt7_B 1 DQLVSMSVRELNRHL---------RGFTKDEVIRLKQKRRT 32 (90)
T ss_dssp CHHHHSCHHHHHTTC---------TTCCHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHH---------cCCCHHHHHHHHHHHHh
Confidence 689999999986665 59999999999998754
No 20
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=64.11 E-value=2.6 Score=36.16 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=31.9
Q ss_pred ccccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC-CChHHHHHHh
Q psy2143 15 PRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
..++.|++--++.|-.=.| .=-...|||++++||.+ -++||.+-||
T Consensus 2 ~~Gl~g~~~~~t~Is~id~------------------~~G~L~YRGy~i~dLa~~~~fEeva~LL 48 (363)
T 2c6x_A 2 HYGLKGITCVETSISHIDG------------------EKGRLIYRGHHAKDIALNHSFEEAAYLI 48 (363)
T ss_dssp CGGGTTCCCEEESSEEEET------------------TTTEEEETTEEHHHHHHHSCHHHHHHHH
T ss_pred CCcCCCCeeeeeeCeEEEC------------------CCCEEEEcCccHHHHHccCCHHHHHHHH
Confidence 3567777777666644333 01248899999999988 4688887774
No 21
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=62.87 E-value=2.9 Score=36.08 Aligned_cols=47 Identities=11% Similarity=0.211 Sum_probs=34.4
Q ss_pred cccccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC--CChHHHHHHh
Q psy2143 14 VPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD--MPTEQLMELM 78 (149)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~--Ms~eel~~Ll 78 (149)
+..++.|++--++.|-.=.| .=-...|||++++||.+ -++||++-||
T Consensus 7 ~~~Gl~g~~~~~t~Is~id~------------------~~G~L~YRGy~i~dLa~~~~~fEeva~LL 55 (385)
T 2ifc_A 7 ISKGLEDVNIKWTRLTTIDG------------------NKGILRYGGYSVEDIIASGAQDEEIQYLF 55 (385)
T ss_dssp BCGGGTTCEEEEESSEEEET------------------TTTEEEETTEEHHHHHHTTCCHHHHHHHH
T ss_pred CCCCcCCCeeeeeeCeEEEC------------------CCCEEEECCccHHHHHhcCCCHHHHHHHH
Confidence 56788888877777644333 01248899999999988 6789988774
No 22
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=61.41 E-value=3.1 Score=36.33 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.2
Q ss_pred eeEEecCCchHhhC-CChHHHHHHh
Q psy2143 55 KFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 55 kFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
...|||++++||.+ -++||++-||
T Consensus 56 ~L~YRGy~I~dLa~~~~fEevayLL 80 (404)
T 3o8j_A 56 DLHYRGYDILDLAEHCEFEEVAHLL 80 (404)
T ss_dssp CEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 58999999999976 5789988774
No 23
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=60.22 E-value=3.3 Score=35.76 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=28.5
Q ss_pred ccccccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC-CChHHHHHHh
Q psy2143 13 VVPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
++..+|.||+-.++.|-.=.|+ -....|||++++||.+ -++||++-||
T Consensus 6 ~~~~Gl~gv~~~~t~Is~idg~------------------~g~L~YRGy~I~dLa~~~~feev~yLL 54 (375)
T 3tqg_A 6 KTAKGLRGQSAGETSIATVGKE------------------GHGLTYRGYRIEDLAANATFEEVAYLL 54 (375)
T ss_dssp ----------CCEESSEEECTT------------------SCCEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred ccCCccCCCeEeeeeceEEeCC------------------CCEEEECCeeHHHHHhcCCHHHHHHHH
Confidence 4566788888888777554442 0468999999999975 6789988776
No 24
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=58.21 E-value=3.9 Score=35.65 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=32.0
Q ss_pred cccccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC-CChHHHHHHh
Q psy2143 14 VPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
+..++.||+--++.|-.=.|+ =-...|||++++||.+ .++||++-||
T Consensus 22 ~~~Gl~gv~~~~t~Is~idg~------------------~G~L~YRGy~i~dLa~~~~fEeva~LL 69 (409)
T 2ibp_A 22 IIHGLEDVLIKSTSISDIDGE------------------KGILWYRGYRIEELARLSTYEEVSYLI 69 (409)
T ss_dssp EEGGGTTCEEEEECSEEEETT------------------TTEEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred CCCCcCCCeeeeeeCeEEECC------------------CCEEEEcCccHHHHHccCCHHHHHHHH
Confidence 446666666666555433332 1248899999999988 5789988774
No 25
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=55.49 E-value=4.6 Score=34.71 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=33.2
Q ss_pred cccccccccCCCcccccCccceeeccccchhHHhhcccceeeeEEecCCchHhhC-CChHHHHHHh
Q psy2143 14 VPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkrtfkkFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
+..++.|++--++.|-.=.| .=-...|||++++||.+ -++||.+-||
T Consensus 4 ~~~Gl~gv~~~~t~Is~id~------------------~~G~L~YRGy~i~dLa~~~~feeva~LL 51 (377)
T 1o7x_A 4 VSKGLENVIIKVTNLTFIDG------------------EKGILRYRGYNIEDLVNYGSYEETIYLM 51 (377)
T ss_dssp BCGGGTTCEEEEESSEEEET------------------TTTEEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred CCcccCCCeeeeeeCeEEEC------------------CCCEEEECCccHHHHHcCCCHHHHHHHH
Confidence 55677777777666644333 01248899999999988 5789988774
No 26
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.47 E-value=9.2 Score=27.88 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=43.9
Q ss_pred ccCccccccccccccCCCcccccCccceeeccccchhHHhh---cccceeee---EEecCCchHhhCCChHHHHHHhhhh
Q psy2143 8 SKSSAVVPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQK---KKRTFRKF---TFRGVDLDQLLDMPTEQLMELMHCR 81 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kkrtfkkF---tYRG~~leeL~~Ms~eel~~LlpaR 81 (149)
+.||.+.-++ .+.++..+.+.........+++...+.+ +.+.|-.+ .+-+++=.||+.|+-+||.+++| .
T Consensus 3 ~~~~~~~~~~---~~~r~~~~~~~~~~~~~L~~~Ssp~EV~~WL~~kgFS~~tv~~Lg~ltGaqLl~Ltk~eL~~vCg-E 78 (99)
T 2e8m_A 3 SGSSGTIGRS---AAQKKFHVPRQNVPVINITYDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCP-E 78 (99)
T ss_dssp SSCSSCCCCS---CCCCCCSCCCSCCCCCCCCTTCCTTHHHHHHHHHTCCHHHHHHTSSSCHHHHHHCCHHHHHHHCT-T
T ss_pred CCCCcccccc---ccccCcCCCcCCCCceecCCCCCHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHcCCHHHHHHHCC-c
Confidence 3444444333 2344444444333333344444443432 45678777 56678899999999999999999 6
Q ss_pred hhh
Q psy2143 82 ARR 84 (149)
Q Consensus 82 ~RR 84 (149)
.-|
T Consensus 79 G~R 81 (99)
T 2e8m_A 79 GAR 81 (99)
T ss_dssp HHH
T ss_pred hHH
Confidence 544
No 27
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=50.76 E-value=6 Score=34.67 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred eeEEecCCchHhhC-CChHHHHHHh
Q psy2143 55 KFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 55 kFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
...|||++++||.+ -++||++-||
T Consensus 72 ~L~YRGy~I~dLa~~~~fEevayLL 96 (414)
T 3hwk_A 72 SLTYRGYPVQDLAARCSFEQVAFLL 96 (414)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 48899999999976 6789988775
No 28
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=47.97 E-value=6.2 Score=34.71 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=20.1
Q ss_pred eeEEecCCchHhhC-CChHHHHHHh
Q psy2143 55 KFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 55 kFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
...|||++++||.+ -+++|++-||
T Consensus 74 ~L~YRGy~I~dLa~~~~feevayLL 98 (427)
T 3msu_A 74 VLLHRGYPIEEWTQKSNYRTLCYAL 98 (427)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHhccCCHHHHHHHH
Confidence 47999999999976 5788988775
No 29
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=47.55 E-value=6.3 Score=34.64 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.0
Q ss_pred eeEEecCCchHhhC-CChHHHHHHh
Q psy2143 55 KFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 55 kFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
...|||++++||.+ -++||++-||
T Consensus 65 ~L~YRGy~I~dLa~~~~feevayLL 89 (426)
T 3l96_A 65 ILLHRGFPIDQLATDSNYLEVCYIL 89 (426)
T ss_dssp EEEETTEEHHHHHHHSCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 47999999999976 5688887775
No 30
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=46.61 E-value=7.6 Score=34.11 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.0
Q ss_pred eeEEecCCchHhhC-CChHHHHHHh
Q psy2143 55 KFTFRGVDLDQLLD-MPTEQLMELM 78 (149)
Q Consensus 55 kFtYRG~~leeL~~-Ms~eel~~Ll 78 (149)
...|||++++||.+ -+++|.+-||
T Consensus 73 ~L~YRGy~I~dLa~~~~feEvayLL 97 (436)
T 2h12_A 73 VLLHRGYPIAQLAENASYEEVIYLL 97 (436)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 37899999999988 4789987774
No 31
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=43.88 E-value=13 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.400 Sum_probs=20.5
Q ss_pred CchHhhCCChHHHHHHhhhhh-hhhh
Q psy2143 62 DLDQLLDMPTEQLMELMHCRA-RRRF 86 (149)
Q Consensus 62 ~leeL~~Ms~eel~~LlpaR~-RRsl 86 (149)
+++++.++|.|||+++++... -+.|
T Consensus 26 s~~~i~~As~eeL~~vig~~~~A~~I 51 (63)
T 2a1j_A 26 NIAELAALSQDELTSILGNAANAKQL 51 (63)
T ss_dssp SHHHHHTCCHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHCCHHHHHHHcCchHHHHHH
Confidence 899999999999999977554 3444
No 32
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=42.85 E-value=11 Score=26.00 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=25.8
Q ss_pred CchHhhCCChHHHHHHhhhhh-hhhhcCCCC
Q psy2143 62 DLDQLLDMPTEQLMELMHCRA-RRRFARGIK 91 (149)
Q Consensus 62 ~leeL~~Ms~eel~~LlpaR~-RRsl~RGl~ 91 (149)
++++|.++|.|||.++++... -+.|+.-|.
T Consensus 40 Sl~~i~~AS~eEL~~vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 40 NIAELAALSQDELTSILGNAANAKQLYDFIH 70 (84)
T ss_dssp CHHHHHHSCHHHHHHHHSCHHHHHHHHHHHT
T ss_pred CHHHHHHCCHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999999877 677766554
No 33
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=41.75 E-value=19 Score=26.13 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=34.6
Q ss_pred ccccchhHHhh---cccceeee---EEecCCchHhhCCChHHHHHHhhhhhhhh
Q psy2143 38 RNFSTVEETQK---KKRTFRKF---TFRGVDLDQLLDMPTEQLMELMHCRARRR 85 (149)
Q Consensus 38 ~~~~~~~~~~~---kkrtfkkF---tYRG~~leeL~~Ms~eel~~LlpaR~RRs 85 (149)
..+++...+.+ +++.|-.+ .+-+++=.||+.|+-+||.+++|+..-|=
T Consensus 20 L~~~Ssp~EV~~WL~~kgFS~~tv~~Lg~ltGaqLf~Ltk~eL~~vCg~EG~Rl 73 (99)
T 1wwu_A 20 LTYESGPDEVRAWLEAKAFSPRIVENLGILTGPQLFSLNKEELKKVCGEEGVRV 73 (99)
T ss_dssp CCTTCCHHHHHHHHHHHTCCTTHHHHTTSSCHHHHHTCCHHHHHHHHTTTHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHcCCHHHHHHHCcchhHHH
Confidence 34444443332 45678777 46678899999999999999999776553
No 34
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=41.60 E-value=6.8 Score=34.39 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=18.8
Q ss_pred eEEecCCchHhhCC----------ChHHHHHHh
Q psy2143 56 FTFRGVDLDQLLDM----------PTEQLMELM 78 (149)
Q Consensus 56 FtYRG~~leeL~~M----------s~eel~~Ll 78 (149)
..|||++++||.+- +.||++-||
T Consensus 62 l~YRGy~I~dLa~~~~~~~~~~~~~feev~yLL 94 (435)
T 1csh_A 62 IRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLL 94 (435)
T ss_dssp EEETTEEHHHHHHHSCBCTTCCSBCHHHHHHHH
T ss_pred eeECCccHHHHHhhCcccccCCcCCHHHHHHHH
Confidence 48999999999985 388877763
No 35
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=39.51 E-value=15 Score=28.56 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=18.0
Q ss_pred cCCchHhhCCChHHHHHHhh
Q psy2143 60 GVDLDQLLDMPTEQLMELMH 79 (149)
Q Consensus 60 G~~leeL~~Ms~eel~~Llp 79 (149)
..+||+|++||-+|+-++|.
T Consensus 106 ~~TLe~LLemsd~evr~~L~ 125 (149)
T 2lpe_A 106 ELTLDALLEMDEAKAKEMLR 125 (149)
T ss_dssp TCSHHHHTTSCHHHHHHHHH
T ss_pred hccHHHHHhcCHHHHHHHHH
Confidence 56999999999999999883
No 36
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=26.77 E-value=1.7e+02 Score=21.32 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=24.7
Q ss_pred CchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhh
Q psy2143 62 DLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKK 106 (149)
Q Consensus 62 ~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk 106 (149)
++++|.+|++.+|.+|...-. +..--.-+-..|+..+.++..
T Consensus 2 ~~~eLk~~~~~eL~eiAk~Lg---I~~~s~mrKqeLI~~IL~~~~ 43 (130)
T 1a62_A 2 NLTELKNTPVSELITLGENMG---LENLARMRKQDIIFAILKQHA 43 (130)
T ss_dssp BHHHHHTSCHHHHHHHHHTTT---CCCCTTSCHHHHHHHHHHHHH
T ss_pred ChHHHhhCCHHHHHHHHHHcC---CCCccccCHHHHHHHHHHHHH
Confidence 578999999999888754432 111101122455666665544
No 37
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=24.13 E-value=49 Score=24.33 Aligned_cols=33 Identities=18% Similarity=0.454 Sum_probs=27.1
Q ss_pred eeeEEe-cCCchHhhCCChHHHHHHhhhhhhhhh
Q psy2143 54 RKFTFR-GVDLDQLLDMPTEQLMELMHCRARRRF 86 (149)
Q Consensus 54 kkFtYR-G~~leeL~~Ms~eel~~LlpaR~RRsl 86 (149)
+.|.|+ +-++..|..++.+|+-.++.....+++
T Consensus 74 krlvY~F~~~~~~l~g~~~~~~~~~~~~~~~~~~ 107 (110)
T 1awc_A 74 KRFVYKFVCDLKTLIGYSAAELNRLVIECEQKKL 107 (110)
T ss_dssp STTEEEECSCHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CeeEEecCCCHHHHhCCCHHHHHHHHHHHhhhhh
Confidence 568898 679999999999999988887665544
No 38
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=23.81 E-value=22 Score=25.90 Aligned_cols=14 Identities=36% Similarity=0.805 Sum_probs=11.6
Q ss_pred cCCchHhhCCChHH
Q psy2143 60 GVDLDQLLDMPTEQ 73 (149)
Q Consensus 60 G~~leeL~~Ms~ee 73 (149)
-+|+|+|++|+.++
T Consensus 53 eIDiDeLLDl~sde 66 (99)
T 1j2m_A 53 EVNIDELLELESEE 66 (99)
T ss_dssp SCCSHHHHCCTTTT
T ss_pred ccCHHHHhcCCcHH
Confidence 57999999997765
No 39
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=23.44 E-value=17 Score=25.65 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=22.9
Q ss_pred CchHhhCCChHHHHHHh-hhhhhhhhcCCCC
Q psy2143 62 DLDQLLDMPTEQLMELM-HCRARRRFARGIK 91 (149)
Q Consensus 62 ~leeL~~Ms~eel~~Ll-paR~RRsl~RGl~ 91 (149)
++-+|.++++|+|.++- |..-|-+||||+-
T Consensus 32 ~i~qL~~~~ledL~~mkIpe~~R~kIWk~l~ 62 (80)
T 1dxs_A 32 SIYHLQNLTIEDLGALKIPEQYRMTIWRGLQ 62 (80)
T ss_dssp CHHHHHTCCHHHHHHTTCCTTTHHHHHHHHH
T ss_pred cchhhccCCHHHHHhCCCCHHHHHHHHhhHH
Confidence 67788888888888774 5555668998865
No 40
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=22.15 E-value=51 Score=22.03 Aligned_cols=24 Identities=13% Similarity=0.481 Sum_probs=19.9
Q ss_pred eeeEEecCC-chHhhCCChHHHHHH
Q psy2143 54 RKFTFRGVD-LDQLLDMPTEQLMEL 77 (149)
Q Consensus 54 kkFtYRG~~-leeL~~Ms~eel~~L 77 (149)
..|.=-|++ ++.|..|+.++|.+|
T Consensus 33 ~~F~~~gid~~~~L~~lt~~DL~~l 57 (82)
T 2kso_A 33 EHFMAAGYTAIEKVVQMTNDDIKRI 57 (82)
T ss_dssp HHHHHTTCCSHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCChHHHHHhCCHHHHHHC
Confidence 346667888 999999999998765
No 41
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=21.70 E-value=31 Score=25.50 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=13.0
Q ss_pred eeEEecCCchHhhCCChHHHHHH
Q psy2143 55 KFTFRGVDLDQLLDMPTEQLMEL 77 (149)
Q Consensus 55 kFtYRG~~leeL~~Ms~eel~~L 77 (149)
-|.|-+-+....+|||+||+++-
T Consensus 7 ~~~~~~~~m~~~ld~sLDdii~~ 29 (177)
T 2f3j_A 7 GQQMGRDPMADKMDMSLDDIIKL 29 (177)
T ss_dssp --------CCCSSSCCHHHHHHH
T ss_pred ceeccccchhhhhccCHHHHHhh
Confidence 34555667778899999999864
No 42
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=20.13 E-value=60 Score=21.40 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.4
Q ss_pred eeeeEEecCC-chHhhCCChHHHHHH
Q psy2143 53 FRKFTFRGVD-LDQLLDMPTEQLMEL 77 (149)
Q Consensus 53 fkkFtYRG~~-leeL~~Ms~eel~~L 77 (149)
...|.=.|++ ++.|..|+.++|.+|
T Consensus 23 ~~~F~~~~~d~~~~l~~lt~~DL~~l 48 (81)
T 1ucv_A 23 RDHFAAGGYSSLGMVLRMNAQDVRAL 48 (81)
T ss_dssp HHHHHHTTCCBHHHHTTCCHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHcCHHHHHhC
Confidence 3346677888 999999999999776
Done!