RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2143
         (149 letters)



>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli
           [TaxId: 562]}
          Length = 79

 Score = 66.7 bits (163), Expect = 3e-16
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 88  RGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVE 147
           R +K+ P   +  L+K +K     +K   ++T  R   I P M+G  + V+NG+    V 
Sbjct: 1   RSLKKGPFIDLHLLKKVEKAVESGDKK-PLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 59

Query: 148 IK 149
           + 
Sbjct: 60  VT 61


>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus
           thermophilus [TaxId: 274]}
          Length = 80

 Score = 65.5 bits (160), Expect = 9e-16
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 88  RGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVE 147
           R +K+        L K  +     EK  ++KT  R   IVPEMVG  + VYNGK    V 
Sbjct: 2   RSLKKGVFVDDHLLEKVLELNAKGEKR-LIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVY 60

Query: 148 IK 149
           I 
Sbjct: 61  IT 62


>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains
          3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
          Length = 64

 Score = 26.0 bits (57), Expect = 0.57
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 55 KFTFRGVDLDQLLDMPTEQLMEL--MHCRARRRFARGIKR 92
          +F    ++   L  +  E  +EL       R    R +++
Sbjct: 24 RFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQ 63


>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 74

 Score = 25.0 bits (54), Expect = 1.6
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 39 NFSTVEE------TQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKR 92
          +F+TV+E        + K +F    F   D+   + M     + +     +++    I+ 
Sbjct: 5  SFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQV 64


>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 78

 Score = 24.2 bits (52), Expect = 3.0
 Identities = 4/41 (9%), Positives = 11/41 (26%)

Query: 52 TFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKR 92
          T     +  +D  + +       + +     R R     + 
Sbjct: 30 TLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAES 70


>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide
          phosphodiesterase 2A, GAF A and GAF B domains {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 154

 Score = 25.0 bits (53), Expect = 3.7
 Identities = 4/21 (19%), Positives = 7/21 (33%)

Query: 62 DLDQLLDMPTEQLMELMHCRA 82
          D+  LL     +   L +   
Sbjct: 1  DVSVLLQEIITEARNLSNAEI 21


>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin
           binding domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 145

 Score = 23.8 bits (51), Expect = 9.2
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 58  FRGVDLDQ---LLDMPTEQLMELMHCRARRRFARGIKR-------KPMALVKKLRKAKKE 107
           F G+   Q   L  +P+   M  MH  AR  F   I++        P  + +     + E
Sbjct: 2   FSGLKFKQNSFLSTVPSVTNMHSMHFDARETFLGVIRKALEPDTSTPFPVRRAFDGLRAE 61

Query: 108 APPNEK 113
             PN+ 
Sbjct: 62  ILPNDT 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 532,410
Number of extensions: 23827
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 14
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.6 bits)