BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2145
(808 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 41/223 (18%)
Query: 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559
T Q P FT+PLQ++ V EG A F + G P +V WFR+ + + S+ + F
Sbjct: 2 TTQAPTFTQPLQSV-VVLEGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISF 58
Query: 560 --GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
G + + V + G Y KATN G+A +TA + +K ET P ++++Q
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKA------ETAPPNFVQRLQS 112
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV 677
+ + +G RV + P ++F + +G
Sbjct: 113 M----------------------------TVRQGSQVRLQVRVTGIPTPVVKF--YRDGA 142
Query: 678 ELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
E++ F + + +L I + P DSG Y A N G A
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA 185
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 44/235 (18%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
TTQAP FT L++ + EG A FE + PV + V WF + I + + +
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPE----VSWFRDGQVISTSTLPGVQIS 57
Query: 238 F--GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
F G L I +SG Y+ +A N GQA ++ LLV ++ +
Sbjct: 58 FSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA--------------- 102
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
P F Q ++ + V + + R+ + +K + R+G
Sbjct: 103 -------------------PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK--FYRDG 141
Query: 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
IQ+S + +L YPEDSGTY+ A N +G A +++ L V+ +
Sbjct: 142 AEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQGE 196
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 45/231 (19%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDF--GY 107
T T+P + E A FE + PV + V WF++G+ ++ F G
Sbjct: 7 TFTQPLQSVVVLEGSTATFEAHISGFPVPE----VSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
L I +SG Y+ +A N +G TST
Sbjct: 63 AKLTIPAVTKANSGRYSLKATN---------------GSGQATST--------------- 92
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
E + + T P F L++ +++G + + R+ + T V+++ + I+
Sbjct: 93 -----AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP--TPVVKFYRDGAEIQ 145
Query: 228 SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
S F + +L I + PEDSG Y+ A N++G+A ++ LLV +
Sbjct: 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQGE 196
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARL--IPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
+QAP FTQP++ + V E A FEA + PV + V+W R+G I S F
Sbjct: 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPE----VSWFRDGQVISTSTLPGVQISF 58
Query: 371 --GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
G L +SG Y+ +A N G+A +++ L V+++ +
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F + LQ++ V +G R+ G PT V+++R+ ++ S + +
Sbjct: 104 PNFVQRLQSM-TVRQGSQVRLQVRV--TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYS 160
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ ++ ED G Y ATN++G A +TA + ++
Sbjct: 161 LLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 41/223 (18%)
Query: 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559
T Q P FT+PLQ++ V EG A F + G P +V WFR+ + + S+ + F
Sbjct: 2 TTQAPTFTQPLQSV-VVLEGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISF 58
Query: 560 --GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
G + + V + G Y KATN G+A +TA + +K ET P ++++Q
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKA------ETAPPNFVQRLQS 112
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV 677
+ + +G RV + P ++F + +G
Sbjct: 113 M----------------------------TVRQGSQVRLQVRVTGIPTPVVKF--YRDGA 142
Query: 678 ELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
E++ F + + +L I + P DSG Y A N G A
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA 185
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 44/233 (18%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
TTQAP FT L++ + EG A FE + PV + V WF + I + + +
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPE----VSWFRDGQVISTSTLPGVQIS 57
Query: 238 F--GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
F G L I +SG Y+ +A N GQA ++ LLV ++ +
Sbjct: 58 FSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA--------------- 102
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
P F Q ++ + V + + R+ + +K + R+G
Sbjct: 103 -------------------PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK--FYRDG 141
Query: 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
IQ+S + +L YPEDSGTY+ A N +G A +++ L V+
Sbjct: 142 AEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 45/229 (19%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDF--GY 107
T T+P + E A FE + PV + V WF++G+ ++ F G
Sbjct: 7 TFTQPLQSVVVLEGSTATFEAHISGFPVPE----VSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
L I +SG Y+ +A N +G TST
Sbjct: 63 AKLTIPAVTKANSGRYSLKATN---------------GSGQATST--------------- 92
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
E + + T P F L++ +++G + + R+ + T V+++ + I+
Sbjct: 93 -----AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP--TPVVKFYRDGAEIQ 145
Query: 228 SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
S F + +L I + PEDSG Y+ A N++G+A ++ LLV
Sbjct: 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARL--IPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
+QAP FTQP++ + V E A FEA + PV + V+W R+G I S F
Sbjct: 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPE----VSWFRDGQVISTSTLPGVQISF 58
Query: 371 --GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
G L +SG Y+ +A N G+A +++ L V+++ +
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F + LQ++ V +G R+ G PT V+++R+ ++ S + +
Sbjct: 104 PNFVQRLQSM-TVRQGSQVRLQVRV--TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYS 160
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ ++ ED G Y ATN++G A +TA + ++
Sbjct: 161 LLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 125/663 (18%), Positives = 221/663 (33%), Gaps = 143/663 (21%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
+CK++ + +++ W+K + ++ +L I D G YTC+A N
Sbjct: 25 LQCKVDGTPE--IRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
VG A L I+E P F
Sbjct: 83 SVGAVASSAVL----------------------------------VIKERKL-PPSFARK 107
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
LK+ G FECR+ ++V W+ + +K + + L I+Q
Sbjct: 108 LKDVHETLGFPVAFECRI--NGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTD 165
Query: 250 PEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIE 309
G Y C A N LG A +S L T ++H
Sbjct: 166 QSHVGQYNCSASNPLGTASSSAKL---------TLSEH---------------------- 194
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
P F + +A ++ F+ + G + +K+TW ++ I+
Sbjct: 195 ---EVPPFFDLKPVSVDLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLV 249
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNL 429
L D+G YTC A N G+ S+ L V+ I+ L
Sbjct: 250 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRF------------IKKL 297
Query: 430 EDTSRFKRKXXXXXXXTQQPSFTVQL---NGPTELVEGEGTIITDTQHPKGLEKIR-KLE 485
E + K+ S +++ TE+ E ++ + LE +E
Sbjct: 298 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 357
Query: 486 DT-----EPHKRPEVDDNA----TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL 536
D+ E H ++ K+ PVF K ++ ++ G + H C L G P
Sbjct: 358 DSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GADVHLECEL--QGTPPF 414
Query: 537 KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+V W ++++ L + + ++ + +V + D G Y CKA+N +G S+ +
Sbjct: 415 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITL 474
Query: 597 KTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHY 656
K P F + L+ S ++ G+
Sbjct: 475 KA------------------------------------PPRFVKKLSDISTVV-GEEVQL 497
Query: 657 DCRVVPVGDPTMRFEWFVNGVEL-KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715
+ G + WF + E+ + + + TL ++ PA++G Y C+ N
Sbjct: 498 QATI--EGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKN 555
Query: 716 RAG 718
AG
Sbjct: 556 EAG 558
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/347 (19%), Positives = 119/347 (34%), Gaps = 82/347 (23%)
Query: 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSG 121
+++ H +ECK+ +KV W+K+ + +FR L++ + EDSG
Sbjct: 303 VKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360
Query: 122 TYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTT 181
YTC A N G A +L+ +
Sbjct: 361 DYTCEAHNAAGSASSSTSLKVK-------------------------------------- 382
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
+ P+F E +G H EC L +V W + ++SG ++ +
Sbjct: 383 EPPVFRKKPHPVETLKGADVHLECEL--QGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 440
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGR 301
++ I+ D G Y C+A N +G G++
Sbjct: 441 SIHILNVDSADIGEYQCKASNDVGSDTCVGSI---------------------------- 472
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN-GVPIQA 360
T+ P F + + DI + +A + G + V W ++ G ++
Sbjct: 473 ---------TLKAPPRFVKKLSDISTVVGEEVQLQATI--EGAEPISVAWFKDKGEIVRE 521
Query: 361 SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
S+ + + L F P ++G YTC+ NE G +TL V
Sbjct: 522 SDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 42/226 (18%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNT--MKVEWFHNNVPIKSGSRFTETNNFG 239
+ P F L++ E G+ +C++ D T +++ W+ + ++S +
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKV----DGTPEIRIAWYKEHTKLRSAPAYKMQFKNN 59
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
+L I + D G YTC+A N++G +S L++ +K
Sbjct: 60 VASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK-------------------- 99
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359
P F + ++D+H FE R+ G L+V+W ++G ++
Sbjct: 100 --------------LPPSFARKLKDVHETLGFPVAFECRI--NGSEPLQVSWYKDGELLK 143
Query: 360 ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
+ T L T G Y C A N LG A +S+ L
Sbjct: 144 DDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 39/219 (17%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
K P F + L+++ G F CR+ G L+V W+++ + L+D + + T
Sbjct: 99 KLPPSFARKLKDVHETL-GFPVAFECRI--NGSEPLQVSWYKDGELLKDDANLQTSFIHN 155
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ + G Y C A+N LG A ++A + +
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLS----------------------- 192
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
++E P F L + ++ G+S + C V G ++ W + E++
Sbjct: 193 -----------EHEVPPFFDLKPVSVDLALGESGTFKCHVT--GTAPIKITWAKDNREIR 239
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719
G + + TL + K D+G Y C A N AG+
Sbjct: 240 PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 135/379 (35%), Gaps = 92/379 (24%)
Query: 55 KPKSIE-NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDII 113
KP S++ L E G F+C + + +K+ W K+ R + G ++ L ++
Sbjct: 203 KPVSVDLALGESGT--FKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 258
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173
D+G YTC A N+ G +D Q G
Sbjct: 259 KVTKGDAGQYTCYASNVAG--------------------------------KDSCSAQLG 286
Query: 174 EYIEETTTQAPIFTTSLKNCEI-KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
+ P F L+ I K+ + +EC++ +KV W+ + I+ S+F
Sbjct: 287 ------VQEPPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKF 338
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
+ L++ EDSG YTC A NA G A +S +L
Sbjct: 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL------------------- 379
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWL 352
V + PVF + + + H E L G +V+W
Sbjct: 380 ------------------KVKEPPVFRKKPHPVETLKGADVHLECEL--QGTPPFQVSWH 419
Query: 353 RNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE--AVTSSTL----- 405
++ +++ + M + +++ D G Y C+A N++G V S TL
Sbjct: 420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPR 479
Query: 406 FVESKASLQLDTQNEAALQ 424
FV+ + + E LQ
Sbjct: 480 FVKKLSDISTVVGEEVQLQ 498
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 39/217 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F +PL++++A G+ C++ G P +++ W++ L + + +
Sbjct: 6 PYFIEPLEHVEAAI-GEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
+ ++ V D G Y CKA N++G ++A + IK
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK-------------------------- 96
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
ER+ P F + L E + G ++CR+ G ++ W+ +G LK +
Sbjct: 97 ------ERKL-PPSFARKLKDVHETL-GFPVAFECRIN--GSEPLQVSWYKDGELLKDDA 146
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
TL I + + G Y C A N G A
Sbjct: 147 NLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTA 183
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/420 (16%), Positives = 153/420 (36%), Gaps = 73/420 (17%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
+ P F +P+ + A + + ++ G ++++ W + ++++
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTS 433
+L D G YTC+A N +G +S+ L ++ + + +K++++ +T
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER------KLPPSFARKLKDVHETL 115
Query: 434 RFKRKXXXXXXXTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRP 493
F ++ + +G EL++ + + T H + ++ L+ + H
Sbjct: 116 GFPVAFECRINGSEPLQVSWYKDG--ELLKDDANLQTSFIH--NVATLQILQTDQSHVG- 170
Query: 494 EVDDNATKQRPVFTK--------------PLQNIDAVEE----GKNAHFSCRLIPVGDPT 535
N + P+ T P ++ V G++ F C + G
Sbjct: 171 --QYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHV--TGTAP 226
Query: 536 LKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595
+K+ W ++ + + + + V D G Y C A+N G+ +A +
Sbjct: 227 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286
Query: 596 IKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAH 655
+ QEP R F + L + + + +
Sbjct: 287 V------------------------------QEPPR------FIKKLEPSRIVKQDEHTR 310
Query: 656 YDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715
Y+C++ G P ++ W+ + E++ S+F + L++ DSG Y C+A N
Sbjct: 311 YECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
E P F + L E G+ C+V G P +R W+ +L+ + +Q
Sbjct: 4 EPPYFIEPLEHV-EAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNV 60
Query: 694 VTLDITKCVPADSGVYMCKAINRAG 718
+L I K +D G Y CKA N G
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVG 85
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF-GY 561
+P FTK + +++ VE G A F C++ DP +V WF+++ P+++S +D G
Sbjct: 41 KPYFTKTILDMEVVE-GSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598
++ +S V +D+ Y CKA N+LGEA TA + ++T
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF- 232
E EE P FT ++ + E+ EG A F+C++ D +V WF ++ P+K F
Sbjct: 32 EVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQ 89
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ + G +L I + +D YTC+AVN+LG+A + LLV +
Sbjct: 90 IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF-GYVA 374
P FT+ + D+ V E AA F+ ++ D + V W ++ P++ S +D G +
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
L +D YTC+AVN LGEA ++ L VE+
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH 689
E+ + KP FT+ + E++EG +A +DC+V DP + WF + +K F + +
Sbjct: 36 EKPHVKPYFTKTILDM-EVVEGSAARFDCKVEGYPDPEVM--WFKDDNPVKESRHFQIDY 92
Query: 690 DF-GYVTLDITKCVPADSGVYMCKAINRAGEA 720
D G +L I++ D Y CKA+N GEA
Sbjct: 93 DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDF-GYVALDIIDTIPEDSGT 122
E A F+CK+E D +V WFK+ PV F+ +D G +L I + +D
Sbjct: 55 EGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK 112
Query: 123 YTCRAVNLVGFAEVQATL 140
YTC+AVN +G A A L
Sbjct: 113 YTCKAVNSLGEATCTAEL 130
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 494 EVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI 553
EV + +P FTK + ++D VE G A F C++ DP +V WF+++ P+++S
Sbjct: 32 EVAEEKPHVKPYFTKTILDMDVVE-GSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHF 88
Query: 554 TTKHDF-GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598
+D G ++ +S V +D+ Y CKA N+LGEA TA + ++T
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT 233
E EE P FT ++ + ++ EG A F+C++ D +V WF ++ P+K F
Sbjct: 32 EVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQ 89
Query: 234 -ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ + G +L I + +D YTC+AVN+LG+A + LLV +
Sbjct: 90 IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 307 IIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVST 366
+ E+ P FT+ + D+ V E AA F+ ++ D + V W ++ P++ S
Sbjct: 33 VAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRHFQI 90
Query: 367 MHDF-GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+D G +L +D YTC+AVN LGEA ++ L VE+
Sbjct: 91 DYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH 689
E+ + KP FT+ + +++EG +A +DC+V DP + WF + +K F + +
Sbjct: 36 EKPHVKPYFTKTILDM-DVVEGSAARFDCKVEGYPDPEVM--WFKDDNPVKESRHFQIDY 92
Query: 690 DF-GYVTLDITKCVPADSGVYMCKAINRAGEA 720
D G +L I++ D Y CKA+N GEA
Sbjct: 93 DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDF-GYVALDIIDTIPEDSGT 122
E A F+CK+E D +V WFK+ PV F+ +D G +L I + +D
Sbjct: 55 EGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK 112
Query: 123 YTCRAVNLVGFAEVQATL 140
YTC+AVN +G A A L
Sbjct: 113 YTCKAVNSLGEATCTAEL 130
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 41/220 (18%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
++ P F K L+ V++ ++ + C++ G P +KV W+++E +++SS+
Sbjct: 94 GVQEPPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKFRMSFV 151
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+++ ++ ED G Y C+A NA G A ++ S+K+K
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK--------------------- 190
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
E P+F + E ++G H +C + G P + W + E
Sbjct: 191 ---------------EPPVFRK-KPHPVETLKGADVHLECEL--QGTPPFQVSWHKDKRE 232
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
L+ G ++ + + ++ I AD G Y CKA N G
Sbjct: 233 LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 127/355 (35%), Gaps = 87/355 (24%)
Query: 55 KPKSIE-NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDII 113
KP S++ L E G F+C + + +K+ W K+ R + G ++ L ++
Sbjct: 11 KPVSVDLALGESGT--FKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173
D+G YTC A N+ G +D Q G
Sbjct: 67 KVTKGDAGQYTCYASNVAG--------------------------------KDSCSAQLG 94
Query: 174 EYIEETTTQAPIFTTSLKNCEI-KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
+ P F L+ I K+ + +EC++ +KV W+ + I+ S+F
Sbjct: 95 ------VQEPPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKF 146
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
+ L++ EDSG YTC A NA G A +S +L
Sbjct: 147 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL------------------- 187
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWL 352
V + PVF + + + H E L G +V+W
Sbjct: 188 ------------------KVKEPPVFRKKPHPVETLKGADVHLECEL--QGTPPFQVSWH 227
Query: 353 RNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE--AVTSSTL 405
++ +++ + M + +++ D G Y C+A N++G V S TL
Sbjct: 228 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 78/211 (36%), Gaps = 40/211 (18%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P F + ++ G+ F+C + + +K+ W +N I+ G + T L
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTA--PIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
+++ D+G YTC A N G+ S L V E +++LE R
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------------EPPRFIKKLEPSRI- 110
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
V +++ +E ++ G ++KV W ++ IQ S++
Sbjct: 111 -----------------------VKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSK 145
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVN 394
L EDSG YTC A N
Sbjct: 146 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 112/295 (37%), Gaps = 30/295 (10%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P F + +A ++ F+ + G + +K+TW ++ I+ L
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRF 435
D+G YTC A N G+ S+ L V+ I+ LE +
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRF------------IKKLEPSRIV 111
Query: 436 KRKXXXXXXXTQQPSFTVQL---NGPTELVEGEGTIITDTQHPKGLEKIR-KLEDT---- 487
K+ S +++ TE+ E ++ + LE +ED+
Sbjct: 112 KQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT 171
Query: 488 -EPHKRPEVDDNA----TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR 542
E H ++ K+ PVF K ++ ++ G + H C L G P +V W +
Sbjct: 172 CEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GADVHLECEL--QGTPPFQVSWHK 228
Query: 543 NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+++ L + + ++ + +V + D G Y CKA+N +G S+ +K
Sbjct: 229 DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 40/197 (20%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578
G++ F C + G +K+ W ++ + + + + V D G Y
Sbjct: 20 GESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 77
Query: 579 CKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIF 638
C A+N G+ +A + + QEP R F
Sbjct: 78 CYASNVAGKDSCSAQLGV------------------------------QEPPR------F 101
Query: 639 TQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDI 698
+ L + + + + Y+C++ G P ++ W+ + E++ S+F + L++
Sbjct: 102 IKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEM 159
Query: 699 TKCVPADSGVYMCKAIN 715
DSG Y C+A N
Sbjct: 160 YNLSVEDSGDYTCEAHN 176
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
P F L + ++ G+S + C V G ++ W + E++ G + + T
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 696 LDITKCVPADSGVYMCKAINRAGE 719
L + K D+G Y C A N AG+
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGK 86
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 41/215 (19%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F K L+ V++ ++ + C++ G P +KV W+++E +++SS+
Sbjct: 99 PRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 156
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
+++ ++ ED G Y C+A NA G A ++ S+K+K
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-------------------------- 190
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
E P+F + E ++G H +C + G P + W + EL+ G
Sbjct: 191 ----------EPPVFRK-KPHPVETLKGADVHLECEL--QGTPPFQVSWHKDKRELRSGK 237
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
++ + + ++ I AD G Y CKA N G
Sbjct: 238 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 125/355 (35%), Gaps = 87/355 (24%)
Query: 55 KPKSIE-NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDII 113
KP S++ L E G F+C + + +K+ W K+ R + G ++ L ++
Sbjct: 11 KPVSVDLALGESGT--FKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173
D+G YTC A N+ G A L +
Sbjct: 67 KVTKGDAGQYTCYASNVAGKDSCSAQLGVQA----------------------------- 97
Query: 174 EYIEETTTQAPIFTTSLKNCEI-KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
P F L+ I K+ + +EC++ +KV W+ + I+ S+F
Sbjct: 98 ---------PPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKF 146
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
+ L++ EDSG YTC A NA G A +S +L
Sbjct: 147 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL------------------- 187
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWL 352
V + PVF + + + H E L G +V+W
Sbjct: 188 ------------------KVKEPPVFRKKPHPVETLKGADVHLECEL--QGTPPFQVSWH 227
Query: 353 RNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE--AVTSSTL 405
++ +++ + M + +++ D G Y C+A N++G V S TL
Sbjct: 228 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 78/211 (36%), Gaps = 40/211 (18%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P F + ++ G+ F+C + + +K+ W +N I+ G + T L
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTA--PIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
+++ D+G YTC A N G+ S L V + +++LE R
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRF------------IKKLEPSRI- 110
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
V +++ +E ++ G ++KV W ++ IQ S++
Sbjct: 111 -----------------------VKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSK 145
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVN 394
L EDSG YTC A N
Sbjct: 146 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 113/295 (38%), Gaps = 30/295 (10%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P F + +A ++ F+ + G + +K+TW ++ I+ L
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRF 435
D+G YTC A N G+ S+ L V++ I+ LE +
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRF------------IKKLEPSRIV 111
Query: 436 KRKXXXXXXXTQQPSFTVQL---NGPTELVEGEGTIITDTQHPKGLEKIR-KLEDT---- 487
K+ S +++ TE+ E ++ + LE +ED+
Sbjct: 112 KQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT 171
Query: 488 -EPHKRPEVDDNA----TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR 542
E H ++ K+ PVF K ++ ++ G + H C L G P +V W +
Sbjct: 172 CEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-GADVHLECEL--QGTPPFQVSWHK 228
Query: 543 NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+++ L + + ++ + +V + D G Y CKA+N +G S+ +K
Sbjct: 229 DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 40/197 (20%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578
G++ F C + G +K+ W ++ + + + + V D G Y
Sbjct: 20 GESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 77
Query: 579 CKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIF 638
C A+N G+ +A QL Q P P F
Sbjct: 78 CYASNVAGKDSCSA----------QLGVQAP--------------------------PRF 101
Query: 639 TQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDI 698
+ L + + + + Y+C++ G P ++ W+ + E++ S+F + L++
Sbjct: 102 IKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEM 159
Query: 699 TKCVPADSGVYMCKAIN 715
DSG Y C+A N
Sbjct: 160 YNLSVEDSGDYTCEAHN 176
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 183 APIFTTSLKNCEIKEGQRAHFEC--RLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
AP F++ LK+C + EGQ +C R PV ++ W N PI+ E G
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVP----RITWLLNGQPIQYARSTCEA---GV 63
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L I LPED G YTC A NALGQ S + VH
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 315 APVFTQPMRDIHVAENQ--AAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
AP F+ ++D V E Q R PV ++TWL NG PIQ + + G
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVP----RITWLLNGQPIQYARSTC---EAGV 63
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L+ + PED GTYTC A N LG+ S+ + V
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132
++ W NG+P+ R + G L I D +PED GTYTC A N +G
Sbjct: 42 RITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYTCLAENALG 88
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F+ L++ AV EG++ C + G P ++ W N +P++ +R T + G
Sbjct: 12 PSFSSVLKDC-AVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQ-YARSTC--EAGVAE 65
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTA 592
+ + ED G Y C A NALG+ +A
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSA 94
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
P F+ +L + ++EGQ C V G P R W +NG ++ + G
Sbjct: 12 PSFSSVLKDCA-VIEGQDFVLQCSVR--GTPVPRITWLLNGQPIQYARS---TCEAGVAE 65
Query: 696 LDITKCVPADSGVYMCKAINRAGE 719
L I +P D G Y C A N G+
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQ 89
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVPIQASN---RVSTMHDF 370
APV +P D++V E AA + R G S V WL NG + + R+S +HD
Sbjct: 312 APVIVEPPTDLNVTEGMAAELKCR---TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDG 368
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
LNF +D+G YTC N G S+TL V +K
Sbjct: 369 ---TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGTK 405
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS----RITTKHDF 559
PV +P +++ V EG A CR G V W L RI+ HD
Sbjct: 313 PVIVEPPTDLN-VTEGMAAELKCR---TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDG 368
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
++ ++V +D G Y C TN+ G +A++ + TK
Sbjct: 369 ---TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGTK 405
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 172 RGEYIEET-----TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVP 225
+G YI E T AP+ + + EG A +CR + V W N
Sbjct: 296 KGRYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCR---TGTSMTSVNWLTPNGTL 352
Query: 226 IKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+ GS + L+ +D+G YTC N+ G S L V +K
Sbjct: 353 MTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGTK 405
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGS---RFHVQHDFGYVTLDITKCVP 703
+ EG +A CR G W NG + GS R V HD TL+ T
Sbjct: 324 VTEGMAAELKCRT---GTSMTSVNWLTPNGTLMTHGSYRVRISVLHDG---TLNFTNVTV 377
Query: 704 ADSGVYMCKAINRAG 718
D+G Y C N AG
Sbjct: 378 QDTGQYTCMVTNSAG 392
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGH---RFRPIHDFGYV 108
+ +P + N+ E A +C+ S V W NG +T G R +HD
Sbjct: 315 IVEPPTDLNVTEGMAAELKCR---TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDG--- 368
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L+ + +D+G YTC N G ATL
Sbjct: 369 TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLN 401
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPV-SDNTMKVEWFHNNVPIKSGSRFTETNN 237
T AP T +++ + GQ F ++ V S T +V+W+HN V ++ S+ TN
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRF---ILNVQSKPTAEVKWYHNGVELQESSKIHYTNT 60
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQA 267
G + L+I+ C +DSG Y N G+A
Sbjct: 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEA 90
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Query: 666 PTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
PT +W+ NGVEL+ S+ H + G +TL+I C DSG Y N GEA
Sbjct: 36 PTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEA 90
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
T+ AP T MR V Q F + +++K W NGV +Q S+++ +
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVK--WYHNGVELQESSKIHYTNTS 61
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
G + L + +DSGTY N GEA +TL V
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 534 PTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593
PT +V+W+ N L++SS+I + G + +++ +D G Y TN GEA A+
Sbjct: 36 PTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYAT 95
Query: 594 MKI 596
+ +
Sbjct: 96 LDV 98
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
+V+W+ NG + + + G + L+I+D +DSGTY N G A ATL
Sbjct: 39 EVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Query: 143 RG 144
G
Sbjct: 99 TG 100
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 46/223 (20%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS-GSRFTETN 236
E +AP+ TT L+ + + A F C + S ++ W N + IK +R++
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAV--ESYPQPEISWTRNKILIKLFDTRYSIRE 59
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQ 296
N L I+ D G+Y C A N +G AV ES LQ
Sbjct: 60 NGQL--LTILSVEDSDDGIYCCTANNGVGGAV--------------------ESCGALQ- 96
Query: 297 LEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGV 356
V P T+P ++ + E A + G+ K V+W++
Sbjct: 97 ---------------VKMKPKITRPPINVKIIEGLKAVLPCTTM--GNPKPSVSWIKGDS 139
Query: 357 PIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399
++ ++R++ + +L ED+G Y C A N LG A
Sbjct: 140 ALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 47/220 (21%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ PV T PL+ +DA+ E + A F C + P ++ W RN+ ++ + + G
Sbjct: 6 KAPVITTPLETVDALVE-EVATFMCAVESYPQP--EISWTRNKILIKLFDTRYSIRENGQ 62
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAV-TTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ LS V D+GIY C A N +G AV + ++++K K + T+ P +K
Sbjct: 63 LLTILS-VEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKI---TRPPINVK------- 111
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
I+EG A C +G+P W L+
Sbjct: 112 ---------------------------IIEGLKAVLPCTT--MGNPKPSVSWIKGDSALR 142
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
SR V ++ K D+G Y C A N G A
Sbjct: 143 ENSRIAVLESGSLRIHNVQK---EDAGQYRCVAKNSLGTA 179
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559
K +P T+P N+ +E G A C + G+P V W + + L ++SRI
Sbjct: 97 VKMKPKITRPPINVKIIE-GLKAVLPCTTM--GNPKPSVSWIKGDSALRENSRIAVLESG 153
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEA 588
++ + +V+ ED G Y C A N+LG A
Sbjct: 154 ---SLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
+APV T P+ + + A F + + +++W RN + I+ + ++ + G +
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAV--ESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
L D G Y C A N +G AV S
Sbjct: 64 -LTILSVEDSDDGIYCCTANNGVGGAVES 91
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 87/222 (39%), Gaps = 50/222 (22%)
Query: 504 PVFTKPLQNIDA-VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P + P ++ +A E G+ FSCR G P + WFRN K +E++ + K
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGS--NT 58
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQ-HPEGLKKIQELEQP 621
+ + ++ D G Y+C+ATN GE + +A LQ+ Q H LK
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGED--------EKQAFLQVFVQPHIIQLKN------- 103
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
E YE T + E P+ P + ++ V+G
Sbjct: 104 --------ETTYENGQVTLVCDAEGE--------------PI--PEITWKRAVDGFTFTE 139
Query: 682 G-----SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
G R V+ G +L I +DSG Y C+A +R G
Sbjct: 140 GDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 57 KSIENLRERGHAH-FECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
KS ERG F C+ EP + WF+NG+ + ++ I L
Sbjct: 10 KSFNATAERGEEMTFSCRASGSPEPA------ISWFRNGKLIEENEKY--ILKGSNTELT 61
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ + I D G Y CRA N G E QA LQ
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQ 91
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
PA MPQ+ T+E G+ + CR G P WF NG ++
Sbjct: 3 PAISMPQKS------------FNATAE--RGEEMTFSCRAS--GSPEPAISWFRNGKLIE 46
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719
++ ++ L + + +D G Y+C+A N+AGE
Sbjct: 47 ENEKYILKGS--NTELTVRNIINSDGGPYVCRATNKAGE 83
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P + P + + + G + ++W RNG I+ + + + L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTEL 60
Query: 376 NFKYTYPEDSGTYTCRAVNELGE 398
+ D G Y CRA N+ GE
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGE 83
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPE 251
N + G+ F CR + + WF N I+ ++ + L + +
Sbjct: 13 NATAERGEEMTFSCRASGSPEPA--ISWFRNGKLIEENEKYILKGSN--TELTVRNIINS 68
Query: 252 DSGVYTCRAVNALGQ 266
D G Y CRA N G+
Sbjct: 69 DGGPYVCRATNKAGE 83
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 504 PVFTKPLQNIDA-VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P + P ++ +A E G+ FSCR G P + WFRN K +E++ + K
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGS--NT 248
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + ++ D G Y+C+ATN GE A +++
Sbjct: 249 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 57 KSIENLRERGHAH-FECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
KS ERG F C+ EP + WF+NG+ + ++ I L
Sbjct: 200 KSFNATAERGEEMTFSCRASGSPEPA------ISWFRNGKLIEENEKY--ILKGSNTELT 251
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ + I D G Y CRA N G E QA LQ
Sbjct: 252 VRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 56/211 (26%)
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEW-FRNEKPLEDSSRITTKHD--FGYVAMDLSHVRA-- 571
++G++A CR+ P V W + NE+ +TT D F +A + +
Sbjct: 111 KQGEDAEVVCRV--SSSPAPAVSWLYHNEE-------VTTISDNRFAMLANNNLQILNIN 161
Query: 572 -EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ--PASPMPQE 628
DEGIY C+ ++E + + I + PA MPQ+
Sbjct: 162 KSDEGIYRCEG---------------------RVEARGEIDFRDIIVIVNVPPAISMPQK 200
Query: 629 PERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ 688
T+E G+ + CR G P WF NG ++ ++ ++
Sbjct: 201 S------------FNATAE--RGEEMTFSCRAS--GSPEPAISWFRNGKLIEENEKYILK 244
Query: 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGE 719
L + + +D G Y+C+A N+AGE
Sbjct: 245 GS--NTELTVRNIINSDGGPYVCRATNKAGE 273
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWF--RNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
G++ F+C I G+P ++W+ + EK + + R+ + + + + + ED GI
Sbjct: 19 GESKFFTCTAI--GEPE-SIDWYNPQGEKII-STQRVVVQKEGVRSRLTIYNANIEDAGI 74
Query: 577 YICKATNALGEAV-TTASMKIKTKAGLQLETQHPEGLKKIQELE----QPASPMP 626
Y C+AT+A G+ T ++I K + E P+ K+ ++ E +SP P
Sbjct: 75 YRCQATDAKGQTQEATVVLEIYQKLTFR-EVVSPQEFKQGEDAEVVCRVSSSPAP 128
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 90/260 (34%), Gaps = 49/260 (18%)
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
R I + + G+ + Q + K + Q + E Q F + E K+G+ A
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY-QKLTFREVVSPQEFKQGEDAE 117
Query: 203 FECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL---PEDSGVYTCR 259
CR+ S V W ++N + + S N F +A + +Q L D G+Y C
Sbjct: 118 VVCRV--SSSPAPAVSWLYHNEEVTTIS----DNRFAMLANNNLQILNINKSDEGIYRCE 171
Query: 260 A-VNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVF 318
V A G+ + +++V V+ P
Sbjct: 172 GRVEARGE-IDFRDIIV-----------------------------------IVNVPPAI 195
Query: 319 TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFK 378
+ P + + + G + ++W RNG I+ + + + L +
Sbjct: 196 SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVR 253
Query: 379 YTYPEDSGTYTCRAVNELGE 398
D G Y CRA N+ GE
Sbjct: 254 NIINSDGGPYVCRATNKAGE 273
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVPIKSGSRFTETNNFGFVALDI 245
T SL E+ G+ F C I ++ ++W++ I S R L I
Sbjct: 8 TISLSKVELSVGESKFFTCTAIGEPES---IDWYNPQGEKIISTQRVVVQKEGVRSRLTI 64
Query: 246 MQCLPEDSGVYTCRAVNALGQ 266
ED+G+Y C+A +A GQ
Sbjct: 65 YNANIEDAGIYRCQATDAKGQ 85
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 82/213 (38%), Gaps = 51/213 (23%)
Query: 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVA-MDLSHVRA- 571
V G A F C GDP + W +N K + + SR T G ++ + + VRA
Sbjct: 19 GVRVGGVASFYCAA--RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAG 76
Query: 572 EDEGIYICKATNALGEAVTT-ASMKI----KTKAGLQLETQHPEGLKKIQELEQPASPMP 626
D+ Y C A N +G+AV+ A++ I KT AG + TQ P
Sbjct: 77 RDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP----------------- 119
Query: 627 QEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS-RF 685
GT I G + C+ +G+PT W N ++ M + R+
Sbjct: 120 -----------------GTRVIEVGHTVLMTCKA--IGNPTPNIYWIKNQTKVDMSNPRY 160
Query: 686 HVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
++ F L I D G Y C A N G
Sbjct: 161 SLKDGF----LQIENSREEDQGKYECVAENSMG 189
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 79/218 (36%), Gaps = 45/218 (20%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT-IGHRFRPIHDFGYVALD 111
+ KP++ + +R G A F C D + W KNG+ V+ R+ + G +++
Sbjct: 12 IRKPQN-QGVRVGGVASFYCAAR--GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 112 IIDTI--PEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
I+ + D Y C A N VG A ATL Y DK
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTI--------------------YEGDK- 107
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK- 227
T P+ T I+ G C+ I + T + W N +
Sbjct: 108 ----------TPAGFPVITQGPGTRVIEVGHTVLMTCKAI--GNPTPNIYWIKNQTKVDM 155
Query: 228 SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265
S R++ + F L I ED G Y C A N++G
Sbjct: 156 SNPRYSLKDGF----LQIENSREEDQGKYECVAENSMG 189
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 48/228 (21%)
Query: 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK-SGSRFTETNNFGFVALDIMQCL 249
+N ++ G A F C D + W N + + SR+T G + I++
Sbjct: 16 QNQGVRVGGVASFYCAA--RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG--GISILRIE 71
Query: 250 P----EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRT 305
P D Y C A N +G AV++ L + +G
Sbjct: 72 PVRAGRDDAPYECVAENGVGDAVSADATLT---------------------IYEG----- 105
Query: 306 SIIEDTVSQAPVFTQP--MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
+ T + PV TQ R I V +A +G+ + W++N + SN
Sbjct: 106 ---DKTPAGFPVITQGPGTRVIEVGHTVLMTCKA----IGNPTPNIYWIKNQTKVDMSNP 158
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG-EAVTSSTLFVESK 410
++ D G+ L + + ED G Y C A N +G E ++ L+V+ +
Sbjct: 159 RYSLKD-GF--LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR 203
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 504 PVFTKPLQNIDA-VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P + P ++ +A E G+ FSCR G P + WFRN K +E++ + K
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGS--NT 152
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + ++ D G Y+C+ATN GE A +++
Sbjct: 153 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 57 KSIENLRERGHAH-FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDT 115
KS ERG F C+ + + WF+NG+ + ++ I L + +
Sbjct: 104 KSFNATAERGEEMTFSCRASGSPEP--AISWFRNGKLIEENEKY--ILKGSNTELTVRNI 159
Query: 116 IPEDSGTYTCRAVNLVGFAEVQATLQ 141
I D G Y CRA N G E QA LQ
Sbjct: 160 INSDGGPYVCRATNKAGEDEKQAFLQ 185
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 56/211 (26%)
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEW-FRNEKPLEDSSRITTKHD--FGYVAMDLSHVRA-- 571
++G++A CR+ P V W + NE+ +TT D F +A + +
Sbjct: 15 KQGEDAEVVCRV--SSSPAPAVSWLYHNEE-------VTTISDNRFAMLANNNLQILNIN 65
Query: 572 -EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ--PASPMPQE 628
DEGIY C+ ++E + + I + PA MPQ+
Sbjct: 66 KSDEGIYRCEG---------------------RVEARGEIDFRDIIVIVNVPPAISMPQK 104
Query: 629 PERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ 688
T+E G+ + CR G P WF NG ++ ++ ++
Sbjct: 105 S------------FNATAE--RGEEMTFSCRAS--GSPEPAISWFRNGKLIEENEKYILK 148
Query: 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGE 719
L + + +D G Y+C+A N+AGE
Sbjct: 149 GS--NTELTVRNIINSDGGPYVCRATNKAGE 177
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
V+ P + P + + + G + ++W RNG I+ + + +
Sbjct: 93 VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGS 150
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGE 398
L + D G Y CRA N+ GE
Sbjct: 151 NTELTVRNIINSDGGPYVCRATNKAGE 177
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 87/223 (39%), Gaps = 53/223 (23%)
Query: 505 VFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVA 563
+ KP QN V G A F C GDP + W +N K + + SR T G ++
Sbjct: 9 IIRKP-QN-QGVRVGGVASFYCAA--RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 564 -MDLSHVRA-EDEGIYICKATNALGEAVTT-ASMKI----KTKAGLQLETQHPEGLKKIQ 616
+ + VRA D+ Y C A N +G+AV+ A++ I KT AG + TQ P
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP------- 117
Query: 617 ELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG 676
GT I G + C+ +G+PT W N
Sbjct: 118 ---------------------------GTRVIEVGHTVLMTCKA--IGNPTPNIYWIKNQ 148
Query: 677 VELKMGS-RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
++ M + R+ ++ F L I D G Y C A N G
Sbjct: 149 TKVDMSNPRYSLKDGF----LQIENSREEDQGKYECVAENSMG 187
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 79/218 (36%), Gaps = 45/218 (20%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT-IGHRFRPIHDFGYVALD 111
+ KP++ + +R G A F C D + W KNG+ V+ R+ + G +++
Sbjct: 10 IRKPQN-QGVRVGGVASFYCAAR--GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 112 IIDTI--PEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
I+ + D Y C A N VG A ATL Y DK
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTI--------------------YEGDK- 105
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK- 227
T P+ T I+ G C+ I + T + W N +
Sbjct: 106 ----------TPAGFPVITQGPGTRVIEVGHTVLMTCKAI--GNPTPNIYWIKNQTKVDM 153
Query: 228 SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265
S R++ + F L I ED G Y C A N++G
Sbjct: 154 SNPRYSLKDGF----LQIENSREEDQGKYECVAENSMG 187
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 90/241 (37%), Gaps = 48/241 (19%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK-SGSRFTETN 236
ET P +N ++ G A F C D + W N + + SR+T
Sbjct: 1 ETGAHPPEIIRKPQNQGVRVGGVASFYCAA--RGDPPPSIVWRKNGKKVSGTQSRYTVLE 58
Query: 237 NFGFVALDIMQCLP----EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
G + I++ P D Y C A N +G AV++ L
Sbjct: 59 QPG--GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLT----------------- 99
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQP--MRDIHVAENQAAHFEARLIPVGDSKLKVT 350
+ +G + T + PV TQ R I V +A +G+ +
Sbjct: 100 ----IYEG--------DKTPAGFPVITQGPGTRVIEVGHTVLMTCKA----IGNPTPNIY 143
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG-EAVTSSTLFVES 409
W++N + SN ++ D G+ L + + ED G Y C A N +G E ++ L+V+
Sbjct: 144 WIKNQTKVDMSNPRYSLKD-GF--LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200
Query: 410 K 410
+
Sbjct: 201 R 201
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 47/183 (25%)
Query: 225 PIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
PI +R ++N L+I ED+G Y C A N+ G+ V G L +++
Sbjct: 246 PIARKARRHKSNGI----LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ------ 295
Query: 285 TQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGD 344
P + Q + DIHVA ++ +E + G
Sbjct: 296 -------------------------------PNWVQIINDIHVAMEESVFWECKA--NGR 322
Query: 345 SKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSST 404
K WL+NG P+ +R+ LN D+G Y C A N+ G +S+
Sbjct: 323 PKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAE 378
Query: 405 LFV 407
L V
Sbjct: 379 LSV 381
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 50/203 (24%)
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNE-KPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
E+G C +G+P + W R + KP+ +R +H + +++ + + ED G
Sbjct: 218 EKGTTVKLEC--FALGNPVPTILWRRADGKPIARKAR---RHKSNGI-LEIPNFQQEDAG 271
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C A N+ G+ V + Y +
Sbjct: 272 SYECVAENSRGKNVAKGQLTF------------------------------------YAQ 295
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
P + Q++ ME +S ++C+ G P + W NG L R ++ T
Sbjct: 296 PNWVQIINDIHVAME-ESVFWECKAN--GRPKPTYRWLKNGDPLLTRDRIQIEQG----T 348
Query: 696 LDITKCVPADSGVYMCKAINRAG 718
L+IT +D+G+Y C A N+ G
Sbjct: 349 LNITIVNLSDAGMYQCVAENKHG 371
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHV-----RAE 572
E K SC + G+P + W N + + DF Y +D S + + +
Sbjct: 22 EEKKVKLSCEV--KGNPKPHIRWKLN------GTDVDIGMDFRYSVVDGSLLINNPNKTQ 73
Query: 573 DEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631
D G Y C ATN+ G V+ A ++ + T+ +++ Q + P P E
Sbjct: 74 DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL 133
Query: 632 QY 633
Y
Sbjct: 134 SY 135
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
G P W +N PL RI + ++++ V D G+Y C A N G ++
Sbjct: 321 GRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSS 376
Query: 592 ASMKI 596
A + +
Sbjct: 377 AELSV 381
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 47/183 (25%)
Query: 225 PIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
PI +R ++N L+I ED+G Y C A N+ G+ V G L +++
Sbjct: 245 PIARKARRHKSNGI----LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ------ 294
Query: 285 TQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGD 344
P + Q + DIHVA ++ +E + G
Sbjct: 295 -------------------------------PNWVQIINDIHVAMEESVFWECKA--NGR 321
Query: 345 SKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSST 404
K WL+NG P+ +R+ LN D+G Y C A N+ G +S+
Sbjct: 322 PKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAE 377
Query: 405 LFV 407
L V
Sbjct: 378 LSV 380
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 50/203 (24%)
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNE-KPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
E+G C +G+P + W R + KP+ +R +H + +++ + + ED G
Sbjct: 217 EKGTTVKLEC--FALGNPVPTILWRRADGKPIARKAR---RHKSNGI-LEIPNFQQEDAG 270
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C A N+ G+ V + Y +
Sbjct: 271 SYECVAENSRGKNVAKGQLTF------------------------------------YAQ 294
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
P + Q++ ME +S ++C+ G P + W NG L R ++ T
Sbjct: 295 PNWVQIINDIHVAME-ESVFWECKAN--GRPKPTYRWLKNGDPLLTRDRIQIEQG----T 347
Query: 696 LDITKCVPADSGVYMCKAINRAG 718
L+IT +D+G+Y C A N+ G
Sbjct: 348 LNITIVNLSDAGMYQCVAENKHG 370
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHV-----RAE 572
E K SC + G+P + W N + + DF Y +D S + + +
Sbjct: 21 EEKKVKLSCEV--KGNPKPHIRWKLN------GTDVDIGMDFRYSVVDGSLLINNPNKTQ 72
Query: 573 DEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631
D G Y C ATN+ G V+ A ++ + T+ +++ Q + P P E
Sbjct: 73 DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL 132
Query: 632 QY 633
Y
Sbjct: 133 SY 134
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
G P W +N PL RI + ++++ V D G+Y C A N G ++
Sbjct: 320 GRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSS 375
Query: 592 ASMKI 596
A + +
Sbjct: 376 AELSV 380
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 161/419 (38%), Gaps = 61/419 (14%)
Query: 216 KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG--NL 273
+++W+ N +P++S T G V L IM+ D+G YT N + + S +L
Sbjct: 361 EIKWYKNGIPLESN----HTIKAGHV-LTIMEVSERDTGNYTVILTNPISKEKQSHVVSL 415
Query: 274 LVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHV---AEN 330
+V+ I GE S + ++ +Y T + TV P P IH E
Sbjct: 416 VVYVPPQI------GEK-SLISPVDSYQYGTTQTLTCTVYAIP----PPHHIHWYWQLEE 464
Query: 331 QAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVST-MHDFGYV------ALNFKYTYPE 383
+ A+ ++ + V + W R+ Q N++ + F +
Sbjct: 465 ECANEPSQAVSVTNPYPCEEW-RSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAAN 523
Query: 384 DSGTYTCRAVNELG--EAVTSSTLFVESKASLQLDTQ-NEAALQKIQNLEDTSRFKRKXX 440
S Y C AVN++G E V S + + +LQ D Q E + D S F+
Sbjct: 524 VSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTW 583
Query: 441 XXXXXTQQPSFTVQLNGPTELVEGEGTI--ITDTQHPKGLEKIRKLEDTEPHKRPEVD-- 496
P +L PT + + T+ + T I +E + + D
Sbjct: 584 YKLGPQPLPIHVGEL--PTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYV 641
Query: 497 ----DNATKQR--------------PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKV 538
D TK+R P T L+N G++ SC G+P ++
Sbjct: 642 CLAQDRKTKKRHCVVRQLTVLERVAPTITGNLEN-QTTSIGESIEVSCT--ASGNPPPQI 698
Query: 539 EWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
WF++ + L + S I K G + + VR EDEG+Y C+A + LG A A I+
Sbjct: 699 MWFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 21/84 (25%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVA------LDIIDTIPEDSGTYTCRAVNLVGFAEV 136
++ WFK+ + + D G V L I ED G YTC+A +++G A+V
Sbjct: 697 QIMWFKDNETL--------VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV 748
Query: 137 QATLQCRGSAGILTSTQNETGLEQ 160
+A I+ Q +T LE+
Sbjct: 749 EAFF-------IIEGAQEKTNLER 765
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
+++W+KNG P+ H + H L I++ D+G YT N
Sbjct: 361 EIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTN 402
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 83/221 (37%), Gaps = 64/221 (28%)
Query: 509 PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH 568
P Q +D G+ A F+C+ G+P V W ++ K + S + + +
Sbjct: 351 PTQTVDF---GRPAVFTCQY--TGNPIKTVSWMKDGKAIGHSESV----------LRIES 395
Query: 569 VRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQE 628
V+ ED+G+Y C N A +A +K+ +
Sbjct: 396 VKKEDKGMYQCFVRNDRESAEASAELKLGGR----------------------------- 426
Query: 629 PERQYEKPIFTQLLTGTSEIME-GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV 687
++ P+ Q E ME G S C V G+PT W ++G ++ R+ V
Sbjct: 427 ----FDPPVIRQAFQ--EETMEPGPSVFLKC--VAGGNPTPEISWELDGKKIANNDRYQV 478
Query: 688 QHDFGYVT--------LDITKCVPADSGVYMCKAINRAGEA 720
YVT L+IT D G+Y C A ++ G A
Sbjct: 479 GQ---YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 25/232 (10%)
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSR 434
L K EDSG Y C N +G + L V + S ++D + T
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-----------TVD 356
Query: 435 FKRKXXXXXXXTQQPSFTVQLNGPTELVEGEGTII---TDTQHPKGLEKIRKLEDTE-PH 490
F R T P TV + + +++ + + KG+ + D E
Sbjct: 357 FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAE 416
Query: 491 KRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS 550
E+ PV + Q + +E G + C + G+PT ++ W + K + ++
Sbjct: 417 ASAELKLGGRFDPPVIRQAFQE-ETMEPGPSVFLKC--VAGGNPTPEISWELDGKKIANN 473
Query: 551 SR------ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
R +T D ++++ V A D G+Y C A + +G A +A + +
Sbjct: 474 DRYQVGQYVTVNGDV-VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV 524
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578
G+ A SC++ VG P ++W+R K L S + D + + EDEG+Y
Sbjct: 22 GEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 579 CKATNALGEAVTTASMKIK 597
C ATN +GE T++ + ++
Sbjct: 80 CIATNEVGEVETSSKLLLQ 98
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+AP +K+ K G+ A C+++ P+ D ++W+ + ++ +++
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPD----IKWYRFGKELIQSRKYKMSSDGR 61
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
L +M ED GVYTC A N +G+ TS LL+ +
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA 99
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLI--PVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
+AP + M+D+ +AA +++ P+ D K W R G + S + D
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIK----WYRFGKELIQSRKYKMSSDG 60
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
L ED G YTC A NE+GE TSS L +++
Sbjct: 61 RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA 99
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
G++A C++V G P +W+ G EL ++ + D TL + D GVY
Sbjct: 22 GEAAQLSCQIV--GRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 711 CKAINRAGEA 720
C A N GE
Sbjct: 80 CIATNEVGEV 89
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 68 AHFECKL--EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTC 125
A C++ P+ D ++W++ G+ + +++ D L ++ ED G YTC
Sbjct: 25 AQLSCQIVGRPLPD----IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC 80
Query: 126 RAVNLVGFAEVQATL 140
A N VG E + L
Sbjct: 81 IATNEVGEVETSSKL 95
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 524 FSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHV-RAEDEGIYICKAT 582
++ +G P + WF +K L++S IT ++ Y + + +V R G Y + +
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
Query: 583 NALGEAVTTASMKIKTK 599
N G ++I+ K
Sbjct: 181 NVFGTVDAILDVEIQDK 197
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V EG++A+F CR+I P V W ++++ L+ S + +++ + ++ V+ +D+G
Sbjct: 388 VGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKG 445
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEP 629
Y +A N+ G + + T+H E LK +P PM + P
Sbjct: 446 EYTVRAKNSYGTKEEIVFLNV---------TRHSEPLKF-----EPLEPMKKAP 485
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P F E+ EGQ A+F CR+I S V W ++ +K ++ + N L
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGL 434
Query: 244 DIMQCLPEDSGVYTCRAVNALG--QAVTSGNLLVHSK 278
I + +D G YT RA N+ G + + N+ HS+
Sbjct: 435 TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 471
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH 689
+R +P F GT E+ EGQSA++ CRV+ P + W + ELK ++ ++
Sbjct: 371 DRSEAQPRFIVKPYGT-EVGEGQSANFYCRVIASSPPVV--TWHKDDRELKQSVKYMKRY 427
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAG 718
+ L I + D G Y +A N G
Sbjct: 428 NGNDYGLTINRVKGDDKGEYTVRAKNSYG 456
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 291 LSRLQQLEQGRYQRTSIIE---DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKL 347
+S L + R Q SI + D P F V E Q+A+F R+I S
Sbjct: 349 ISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVI--ASSPP 406
Query: 348 KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
VTW ++ ++ S + ++ L +D G YT RA N G
Sbjct: 407 VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 456
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 128/373 (34%), Gaps = 87/373 (23%)
Query: 251 EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIED 310
+D+GVY C A N +G V SR L G Q S E
Sbjct: 71 QDAGVYQCLASNPVGTVV-----------------------SREAILRFGFLQEFSKEE- 106
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG----VPIQASNRVST 366
+ PV + + N AH+ L WL N +P + VS
Sbjct: 107 ---RDPVKAHEGWGVMLPCNPPAHYPG---------LSYRWLLNEFPNFIPTDGRHFVSQ 154
Query: 367 MHDFGYVALNFKYTYPEDSGTYTCRAVN--------------ELGEAVTSSTLFVES-KA 411
Y+A T D G Y+C A + +L A + LF S KA
Sbjct: 155 TTGNLYIA----RTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKA 210
Query: 412 SLQLDTQ----NEAALQKIQNLEDTSRFKRKXXXXXXXTQQPSFTVQLNGPTELVEGEGT 467
+T + L+ R K + Q + L P+ E EGT
Sbjct: 211 RFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGT 270
Query: 468 IITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCR 527
+ ++ KG + ++ + +P + K + + +A + G N + C
Sbjct: 271 YECEAENSKGRDTVQ-------------GRIIVQAQPEWLKVISDTEA-DIGSNLRWGC- 315
Query: 528 LIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL--SHVRAEDEGIYICKATNAL 585
G P V W RN +PL +R+ +A DL S + ED G+Y C A N
Sbjct: 316 -AAAGKPRPTVRWLRNGEPLASQNRVEV------LAGDLRFSKLSLEDSGMYQCVAENKH 368
Query: 586 GEAVTTASMKIKT 598
G +A + ++
Sbjct: 369 GTIYASAELAVQA 381
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 73/200 (36%), Gaps = 51/200 (25%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578
G+ C G+P +++W + + L S + TT + + V EDEG Y
Sbjct: 221 GQQVTLEC--FAFGNPVPRIKWRKVDGSL--SPQWTTAEP----TLQIPSVSFEDEGTYE 272
Query: 579 CKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIF 638
C+A N+ G + ++ + PE LK I + E
Sbjct: 273 CEAENSKGRDTVQGRIIVQAQ---------PEWLKVISDTE------------------- 304
Query: 639 TQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDI 698
++I G + + C PT+R W NG L +R V L
Sbjct: 305 -------ADI--GSNLRWGCAAAGKPRPTVR--WLRNGEPLASQNRVEVLAG----DLRF 349
Query: 699 TKCVPADSGVYMCKAINRAG 718
+K DSG+Y C A N+ G
Sbjct: 350 SKLSLEDSGMYQCVAENKHG 369
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 658 CRVVPVGDPTMRFEWFVNGVELKM--GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715
CR P + W +NG E+K+ GSR H V ++ TK D+GVY C A N
Sbjct: 28 CRAR--ASPPATYRWKMNGTEMKLEPGSR-HQLVGGNLVIMNPTKA--QDAGVYQCLASN 82
Query: 716 RAG 718
G
Sbjct: 83 PVG 85
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 217 VEWFHNNVPIKSGSRF-TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
V W N P+ S +R + F L + EDSG+Y C A N G S L V
Sbjct: 325 VRWLRNGEPLASQNRVEVLAGDLRFSKLSL-----EDSGMYQCVAENKHGTIYASAELAV 379
Query: 276 HS 277
+
Sbjct: 380 QA 381
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVPIQASN---RVSTMHDF 370
APV +P D++V E AA + R S V+W+ NG + R++ + D
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
LNF +D+G YTC N +G S+TL V
Sbjct: 398 ---TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 172 RGEYIEET-----TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVP 225
+G YI E T AP+ + + EG A +CR S + V W N
Sbjct: 325 KGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTV 381
Query: 226 IKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNL 273
+ G+ L+ +D+G+YTC N++G S L
Sbjct: 382 MTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 50 YYTVTKPKSIE-----NLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFRPIH 103
Y+T P +E N+ E A +C+ + S V W NG +T G I
Sbjct: 336 YFTCYAPVIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRIA 392
Query: 104 DFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGS 145
L+ + +D+G YTC N VG ATL G+
Sbjct: 393 VLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGT 434
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 494 EVDDNA-TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR-NEKPLEDSS 551
E+D N T PV +P +++ V EG A CR V W N + +
Sbjct: 331 ELDQNYFTCYAPVIVEPPADLN-VTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGA 386
Query: 552 ---RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
RI D ++ ++V +D G+Y C +N++G +A++ +
Sbjct: 387 YKVRIAVLSDG---TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P T L+N G++ SC G+P ++ WF++ + L + S I K G
Sbjct: 11 PTITGNLEN-QTTSIGESIEVSC--TASGNPPPQIMWFKDNETLVEDSGIVLKD--GNRN 65
Query: 564 MDLSHVRAEDEGIYICKATNALGEA 588
+ + VR EDEG+Y C+A + LG A
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCA 90
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 22/94 (23%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNN--------VPIKSGSRFT 233
AP T +L+N G+ C S N ++ WF +N + +K G+R
Sbjct: 10 APTITGNLENQTTSIGESIEVSC---TASGNPPPQIMWFKDNETLVEDSGIVLKDGNR-- 64
Query: 234 ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267
L I + ED G+YTC+A + LG A
Sbjct: 65 --------NLTIRRVRKEDEGLYTCQACSVLGCA 90
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 21/83 (25%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVA------LDIIDTIPEDSGTYTCRAVNLVGFAEV 136
++ WFK+ + + D G V L I ED G YTC+A +++G A+V
Sbjct: 41 QIMWFKDNETL--------VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV 92
Query: 137 QATLQCRGSAGILTSTQNETGLE 159
+A I+ Q +T LE
Sbjct: 93 EAFF-------IIEGAQEKTNLE 108
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 170 YQRGEYIEETT-----TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NN 223
+ RG Y+ E AP + ++ I EG+ A +CR P+S V+W N
Sbjct: 334 HMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSS----VKWLLPNG 389
Query: 224 VPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNL 273
+ SR + L+ L D+GVYTC N G + S L
Sbjct: 390 TVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVP 357
+GRY AP RD++++E + A + R P+ K WL NG
Sbjct: 336 RGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVK----WLLPNGTV 391
Query: 358 IQASNR---VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ ++R +S ++D LNF + D+G YTC N G + S+ L V + +
Sbjct: 392 LSHASRHPRISVLND---GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFR-NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
+ EG+ A CR P+ V+W N L +SR ++ SHV D
Sbjct: 364 ISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDT 419
Query: 575 GIYICKATNALGEAVTTASMKIKTKA 600
G+Y C TN G + +A + + T
Sbjct: 420 GVYTCMVTNVAGNSNASAYLNVSTAG 445
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVPAD 705
I EG+ A CR P+ +W + NG L SR TL+ + + +D
Sbjct: 363 NISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSD 418
Query: 706 SGVYMCKAINRAGEA 720
+GVY C N AG +
Sbjct: 419 TGVYTCMVTNVAGNS 433
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWF-KNGRPVTIGHRFRPIHDFGYVA 109
+ + P+ + N+ E A +C+ P++ V+W NG ++ R I
Sbjct: 354 FIMDAPRDL-NISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L+ + D+G YTC N+ G + A L
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 37/222 (16%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
+ +PVF K ++ + G A F C+ G+P ++ W + K + + D
Sbjct: 3 GSDSKPVFVKVPEDQTGLS-GGVASFVCQA--TGEPKPRITWMKKGKKVSSQRFEVIEFD 59
Query: 559 FGYVA-MDLSHVRAE-DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQ 616
G + + + +R + DE IY C ATN+LGE T+A + + E Q P G I
Sbjct: 60 DGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLE------EDQLPSGFPTID 113
Query: 617 ELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG 676
+ QL + +G++A C G+P WF +
Sbjct: 114 --------------------MGPQLKV----VEKGRTATMLCAA--GGNPDPEISWFKDF 147
Query: 677 VELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
+ + + L I +D G Y C A N AG
Sbjct: 148 LPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 40/218 (18%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P+F ++ G A F C+ + ++ W + S RF E F A
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQA--TGEPKPRITWMKKGKKVSS-QRF-EVIEFDDGAG 63
Query: 244 DIMQCLP----EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
+++ P D +Y C A N+LG+ TS L V + + + + +L+ +E+
Sbjct: 64 SVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEK 123
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359
GR G+ +++W ++ +P+
Sbjct: 124 GRTATMLCAAG--------------------------------GNPDPEISWFKDFLPVD 151
Query: 360 ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
+ + AL + + D G Y C A N G
Sbjct: 152 PAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN-RVSTMHDFGYVA 374
PVF + D A F + G+ K ++TW++ G + + V D
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQA--TGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV 65
Query: 375 LNFK-YTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L + D Y C A N LGE TS+ L V
Sbjct: 66 LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 99
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWL-RNGVPIQASNR---VSTMH 368
S P RD++++E + A + R P+ V WL NG + ++R +S ++
Sbjct: 5 SSGPFIMDAPRDLNISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLN 60
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
D LNF + D+G YTC N G + S+ L V S S
Sbjct: 61 DG---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGPS 101
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF-HNNVPIKSGSRFTETNNFG 239
+ P + ++ I EG+ A +CR P+S V+W N + SR +
Sbjct: 5 SSGPFIMDAPRDLNISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLN 60
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
L+ L D+GVYTC N G + S L V S S
Sbjct: 61 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGPS 101
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWF-RNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
+ EG+ A CR P+ V+W N L +SR ++ SHV D
Sbjct: 19 ISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDT 74
Query: 575 GIYICKATNALGEAVTTASMKIKT 598
G+Y C TN G + +A + + +
Sbjct: 75 GVYTCMVTNVAGNSNASAYLNVSS 98
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVPADS 706
I EG+ A CR P+ +W + NG L SR TL+ + + +D+
Sbjct: 19 ISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDT 74
Query: 707 GVYMCKAINRAGEA 720
GVY C N AG +
Sbjct: 75 GVYTCMVTNVAGNS 88
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWF-KNGRPVTIGHRFRPIHDFGYVA 109
+ + P+ + N+ E A +C+ P++ V+W NG ++ R I
Sbjct: 9 FIMDAPRDL-NISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLNDGT 63
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
L+ + D+G YTC N+ G + A L
Sbjct: 64 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 94
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 54/242 (22%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
Q+P + +K+ + A C++ + T +EWF + P+ + + + F
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPT--IEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 242 ALDIMQCL----PEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
AL + + +D G Y C A N +GQAV SR L
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV-----------------------SRHASL 102
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
+ +++ D P +D VA+ + A E P G + + W+++GVP
Sbjct: 103 Q------IAVLRDDFRVEP------KDTRVAKGETALLECGP-PKGIPEPTLIWIKDGVP 149
Query: 358 IQ--------ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STLFVE 408
+ AS+RV + + N + P D G Y C A N +G +S + L V+
Sbjct: 150 LDDLKAMSFGASSRVRIVDGGNLLISNVE---PIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Query: 409 SK 410
K
Sbjct: 207 VK 208
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 82/213 (38%), Gaps = 49/213 (23%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL----EDSSRITTKHDFGYVAMDLSHVRA 571
V++ + A +C++ G P +EWF++ +P+ + S R+ K + + +
Sbjct: 21 VKKNEPATLNCKV--EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKE 78
Query: 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631
+D G Y C A N +G+AV+ A LQ+ + EP+
Sbjct: 79 QDGGEYWCVAKNRVGQAVS-------RHASLQIAVLRDD--------------FRVEPK- 116
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL------KMGSRF 685
+ + +G++A +C P G P W +GV L G+
Sbjct: 117 -------------DTRVAKGETALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASS 162
Query: 686 HVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
V+ G L I+ P D G Y C A N G
Sbjct: 163 RVRIVDGG-NLLISNVEPIDEGNYKCIAQNLVG 194
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
Q+P + D+ V +N+ A ++ G + + W ++G P+ + + S F
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKV--EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 374 ALNFKYTY----PEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
AL F T +D G Y C A N +G+AV+ ASLQ+
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH-------ASLQI 104
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 77/222 (34%), Gaps = 51/222 (22%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI----PEDSGTY 123
A CK+E + +EWFK+G PV+ + F AL T+ +D G Y
Sbjct: 27 ATLNCKVEGKPEPT--IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84
Query: 124 TCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
C A N VG A A+L QI L D
Sbjct: 85 WCVAKNRVGQAVSRHASL-------------------QIAVLRDD--------------- 110
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS--GSRFTETNNFGF 240
F K+ + +G+ A EC P + W + VP+ F ++
Sbjct: 111 ---FRVEPKDTRVAKGETALLECGP-PKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI 166
Query: 241 V---ALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSK 278
V L I P D G Y C A N +G +S L+V K
Sbjct: 167 VDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 54/242 (22%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
Q+P + +K+ + A C++ + T +EWF + P+ + + + F
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPT--IEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 242 ALDIMQCL----PEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
AL + + +D G Y C A N +GQAV SR L
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV-----------------------SRHASL 102
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
+ +++ D P +D VA+ + A E P G + + W+++GVP
Sbjct: 103 Q------IAVLRDDFRVEP------KDTRVAKGETALLECGP-PKGIPEPTLIWIKDGVP 149
Query: 358 IQ--------ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STLFVE 408
+ AS+RV + + N + P D G Y C A N +G +S + L V+
Sbjct: 150 LDDLKAMSFGASSRVRIVDGGNLLISNVE---PIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Query: 409 SK 410
K
Sbjct: 207 VK 208
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 82/213 (38%), Gaps = 49/213 (23%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL----EDSSRITTKHDFGYVAMDLSHVRA 571
V++ + A +C++ G P +EWF++ +P+ + S R+ K + + +
Sbjct: 21 VKKNEPATLNCKV--EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKE 78
Query: 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631
+D G Y C A N +G+AV+ A LQ+ + EP+
Sbjct: 79 QDGGEYWCVAKNRVGQAVS-------RHASLQIAVLRDD--------------FRVEPK- 116
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL------KMGSRF 685
+ + +G++A +C P G P W +GV L G+
Sbjct: 117 -------------DTRVAKGETALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASS 162
Query: 686 HVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
V+ G L I+ P D G Y C A N G
Sbjct: 163 RVRIVDGG-NLLISNVEPIDEGNYKCIAQNLVG 194
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
Q+P + D+ V +N+ A ++ G + + W ++G P+ + + S F
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKV--EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 374 ALNFKYTY----PEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
AL F T +D G Y C A N +G+AV+ ASLQ+
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH-------ASLQI 104
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 77/222 (34%), Gaps = 51/222 (22%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI----PEDSGTY 123
A CK+E + +EWFK+G PV+ + F AL T+ +D G Y
Sbjct: 27 ATLNCKVEGKPEPT--IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84
Query: 124 TCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
C A N VG A A+L QI L D
Sbjct: 85 WCVAKNRVGQAVSRHASL-------------------QIAVLRDD--------------- 110
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS--GSRFTETNNFGF 240
F K+ + +G+ A EC P + W + VP+ F ++
Sbjct: 111 ---FRVEPKDTRVAKGETALLECGP-PKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI 166
Query: 241 V---ALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSK 278
V L I P D G Y C A N +G +S L+V K
Sbjct: 167 VDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 481 IRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEW 540
+RK E R D + Q KP V EG++A+F CR+I P V W
Sbjct: 461 LRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGT--EVGEGQSANFYCRVIASSPPV--VTW 516
Query: 541 FRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG 586
++++ L+ S + +++ + ++ V+ +D+G Y +A N+ G
Sbjct: 517 HKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 562
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P F E+ EGQ A+F CR+I S V W ++ +K ++ + N L
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGL 540
Query: 244 DIMQCLPEDSGVYTCRAVNALG 265
I + +D G YT RA N+ G
Sbjct: 541 TINRVKGDDKGEYTVRAKNSYG 562
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH 689
+R +P F GT E+ EGQSA++ CRV+ P + W + ELK ++ ++
Sbjct: 477 DRSEAQPRFIVKPYGT-EVGEGQSANFYCRVIASSPPVV--TWHKDDRELKQSVKYMKRY 533
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAG 718
+ L I + D G Y +A N G
Sbjct: 534 NGNDYGLTINRVKGDDKGEYTVRAKNSYG 562
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 291 LSRLQQLEQGRYQRTSIIE---DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKL 347
+S L + R Q SI + D P F V E Q+A+F R+I S
Sbjct: 455 ISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVI--ASSPP 512
Query: 348 KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
VTW ++ ++ S + ++ L +D G YT RA N G
Sbjct: 513 VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 562
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 56/147 (38%), Gaps = 39/147 (26%)
Query: 252 DSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDT 311
D GVY C A N LG+AV+ H SL +I+ D
Sbjct: 83 DEGVYVCVARNYLGEAVS-----------------HDASLE------------VAILRDD 113
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
Q P D+ VA + A E + P G + ++W ++G P+ + T+
Sbjct: 114 FRQNP------SDVMVAVGEPAVMECQ-PPRGHPEPTISWKKDGSPLDDKDERITIRGG- 165
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGE 398
L YT D+G Y C N +GE
Sbjct: 166 --KLMITYTRKSDAGKYVCVGTNMVGE 190
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA---- 571
V +G+ A +C+ G PT +EW++ + +E H + L +R
Sbjct: 21 VSKGEPATLNCKA--EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 572 ---EDEGIYICKATNALGEAVT-TASMKI 596
DEG+Y+C A N LGEAV+ AS+++
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS-RITTKHDFGYVAMDLSHVRAEDE 574
V G+ A C+ P G P + W ++ PL+D RIT + + +++ R D
Sbjct: 123 VAVGEPAVMECQP-PRGHPEPTISWKKDGSPLDDKDERITIRGG----KLMITYTRKSDA 177
Query: 575 GIYICKATNALGE 587
G Y+C TN +GE
Sbjct: 178 GKYVCVGTNMVGE 190
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR-FTETNNFGFVA 242
P F SL + ++EGQ R+ + V W N P++ R F E G
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 243 LDIMQCLPEDSGVYTCRAVNALG 265
L I+ D+G YTC+AVN G
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYG 86
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-DSSRITTKH 557
+K P F L + +V EG++ S R+ G+P V W RN +P+ D R +
Sbjct: 1 GSKAPPTFKVSLMD-QSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEA 57
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ G + + D G Y CKA N G A ++++
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR-VSTMHDFGYVA 374
P F + D V E Q R+ G+ K V+WLRN P++ R + + G
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 375 LNFKYTYPEDSGTYTCRAVNELG 397
L D+G YTC+AVNE G
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYG 86
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 84 VEWFKNGRPVTIGHR-FRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
V W +N +PV R F + G L I+ D+G YTC+AVN G + +A L+
Sbjct: 37 VSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Query: 143 RG 144
RG
Sbjct: 97 RG 98
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSR-FHVQHDFGYV 694
P F L S + EGQ RV G+P W N ++ R F + + G
Sbjct: 6 PTFKVSLMDQS-VREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62
Query: 695 TLDITKCVPADSGVYMCKAINRAG 718
L I D+G Y CKA+N G
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYG 86
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 57/159 (35%), Gaps = 43/159 (27%)
Query: 251 EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIED 310
ED G Y C A N G+ G +++H++ +I D
Sbjct: 267 EDEGTYECEAENIKGRDTYQGRIIIHAQPDW-----------------------LDVITD 303
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
T + DI + + G + V WLR+G P+ + NR+
Sbjct: 304 TEA----------DI------GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG- 346
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
L F EDSG Y C A N+ G S+ L V++
Sbjct: 347 ---ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578
G + +SC + G P V W R+ +PL +RI + S + ED G+Y
Sbjct: 309 GSDLRWSC--VASGKPRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQ 362
Query: 579 CKATNALGEAVTTASMKIK 597
C A N G +A + ++
Sbjct: 363 CVAENKHGTVYASAELTVQ 381
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG--SRFHVQHDF 691
E+P T G++E + CR +P + W +NG ELKMG SR+ +
Sbjct: 9 EQPAHTLFPEGSAE----EKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRL---- 58
Query: 692 GYVTLDITKCVPA---DSGVYMCKAINRAG 718
V D+ P D+G Y C A N G
Sbjct: 59 --VAGDLVISNPVKAKDAGSYQCVATNARG 86
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 67/187 (35%), Gaps = 49/187 (26%)
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
G+P +++W + L+ S T+K + + +V EDEG Y C+A N G
Sbjct: 233 GNPVPQIKW----RKLDGSQ--TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGR---- 282
Query: 592 ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEG 651
T G + P+ L I + E ++I G
Sbjct: 283 -----DTYQGRIIIHAQPDWLDVITDTE--------------------------ADI--G 309
Query: 652 QSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMC 711
+ C V G P W +G L +R V L +K V DSG+Y C
Sbjct: 310 SDLRWSC--VASGKPRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQC 363
Query: 712 KAINRAG 718
A N+ G
Sbjct: 364 VAENKHG 370
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 562 VAMDL---SHVRAEDEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQE 617
VA DL + V+A+D G Y C ATNA G V+ AS++ E + P + +
Sbjct: 59 VAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWG 118
Query: 618 LEQPASPMPQEPERQY 633
+ SP P P Y
Sbjct: 119 VMFTCSPPPHYPALSY 134
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 217 VEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
V W + P+ S +R + L + + EDSG+Y C A N G S L V
Sbjct: 326 VRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Query: 277 S 277
+
Sbjct: 382 A 382
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 181 TQAPI-FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+ P+ F +LK+ E+ EG A C L V+ V+W + N ++ G +++
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVA---APVKWCYGNNVLRPGDKYSLRQEGA 61
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ L + P+DSG Y+C + G TS L V
Sbjct: 62 MLELVVRNLRPQDSGRYSC----SFGDQTTSATLTV 93
Score = 36.2 bits (82), Expect = 0.073, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 313 SQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
S PV F + ++D+ V E AA L V V W ++ ++ S +
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVA---APVKWCYGNNVLRPGDKYSLRQEGA 61
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ L + P+DSG Y+C G+ TS+TL V + S
Sbjct: 62 MLELVVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPS 98
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADS 706
E++EG +A C + V P +W L+ G ++ ++ + + L + P DS
Sbjct: 19 EVLEGGAATLRCVLSSVAAPV---KWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDS 75
Query: 707 GVYMC 711
G Y C
Sbjct: 76 GRYSC 80
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
F + L++++ V EG A C L V P V+W L + + + + + +
Sbjct: 11 FQEALKDLE-VLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ ++R +D G Y C + G+ T+A++ +
Sbjct: 67 VRNLRPQDSGRYSC----SFGDQTTSATLTV 93
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
+S PV ++D V+ + A F + G+ + W ++G I + D G
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVK--ATGEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
L T DSG YTC N G +S L +++
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 36.2 bits (82), Expect = 0.073, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
KP+ ++TG + + V G+P W +G + G ++ + D G
Sbjct: 6 KPV---IVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 695 TLDITKCVPADSGVYMCKAINRAG 718
L+I K +DSG+Y C N AG
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAG 86
Score = 35.8 bits (81), Expect = 0.095, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 86 WFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132
W K+G+ +T G +++ D G L+I T DSG YTC N G
Sbjct: 40 WTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAG 86
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+PV LQ+ V A F+ + G+P W ++ K + + D G
Sbjct: 6 KPVIVTGLQDT-TVSSDSVAKFAVK--ATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+++ D G+Y C N+ G ++ + IK
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
+ P+ T L++ + A F + + W + I G ++ + + G
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVK--ATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
L+I + DSG+YTC N+ G +S L + +
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 79/218 (36%), Gaps = 37/218 (16%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+PVF K ++ + G A F C+ G+P ++ W + K + + D G
Sbjct: 6 KPVFIKVPEDQTGLS-GGVASFVCQA--TGEPKPRITWMKKGKKVSSQRFEVIEFDDGAG 62
Query: 563 A-MDLSHVRAE-DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ + + +R + DE IY C ATN+LGE T+A + + E Q P G I Q
Sbjct: 63 SVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLE------EEQLPPGFPSIDMGPQ 116
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
+ EK +L G+P WF + + +
Sbjct: 117 ---------LKVVEKARTATMLCAAG-----------------GNPDPEISWFKDFLPVD 150
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
+ L I +D G Y C A N AG
Sbjct: 151 PATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 40/224 (17%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
ET P+F ++ G A F C+ + ++ W + S RF E
Sbjct: 1 ETGDSKPVFIKVPEDQTGLSGGVASFVCQA--TGEPKPRITWMKKGKKVSS-QRF-EVIE 56
Query: 238 FGFVALDIMQCLP----EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSR 293
F A +++ P D +Y C A N+LG+ TS L V ++ + + +
Sbjct: 57 FDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQ 116
Query: 294 LQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR 353
L+ +E+ R G+ +++W +
Sbjct: 117 LKVVEKARTATMLCAAG--------------------------------GNPDPEISWFK 144
Query: 354 NGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
+ +P+ + + AL + + D G Y C A N G
Sbjct: 145 DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN-RVSTMH 368
+T PVF + D A F + G+ K ++TW++ G + + V
Sbjct: 1 ETGDSKPVFIKVPEDQTGLSGGVASFVCQA--TGEPKPRITWMKKGKKVSSQRFEVIEFD 58
Query: 369 DFGYVALNFK-YTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
D L + D Y C A N LGE TS+ L V
Sbjct: 59 DGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 98
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 76/225 (33%), Gaps = 44/225 (19%)
Query: 66 GHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIP----EDSG 121
G A F C + + ++ W K G+ V+ RF I +F A ++ P D
Sbjct: 22 GVASFVC--QATGEPKPRITWMKKGKKVS-SQRFEVI-EFDDGAGSVLRIQPLRVQRDEA 77
Query: 122 TYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTT 181
Y C A N +G A L LE+ Q
Sbjct: 78 IYECTATNSLGEINTSAKLSV---------------LEEEQL------------------ 104
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGF 240
P F + ++K ++A L N ++ WF + +P+ +
Sbjct: 105 -PPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRS 163
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSKKSIQTE 284
AL I D G Y C A N+ G ++ NL V ++ T+
Sbjct: 164 GALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAGTK 208
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF--GY 561
P F + L+N++ V NA C++ G P V+W+R K + +F GY
Sbjct: 5 PHFKEELRNLN-VRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ ++ V +D +Y +ATN G TAS++++ A + L + EG+ + L
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLP-KTLEGMGAVHAL 117
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 181 TQAPI-FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+ P+ F +LK+ E+ EG A C L V+ V+W + N ++ G +++
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVA---APVKWCYGNNVLRPGDKYSLRQEGA 61
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ L + P+DSG Y+C + G TS L V
Sbjct: 62 XLELVVRNLRPQDSGRYSC----SFGDQTTSATLTV 93
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 313 SQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
S PV F + ++D+ V E AA L V V W ++ ++ S +
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVA---APVKWCYGNNVLRPGDKYSLRQEGA 61
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ L + P+DSG Y+C G+ TS+TL V + S
Sbjct: 62 XLELVVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPS 98
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADS 706
E++EG +A C + V P +W L+ G ++ ++ + + L + P DS
Sbjct: 19 EVLEGGAATLRCVLSSVAAPV---KWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQDS 75
Query: 707 GVYMC 711
G Y C
Sbjct: 76 GRYSC 80
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
F + L++++ V EG A C L V P V+W L + + + + + +
Sbjct: 11 FQEALKDLE-VLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSLRQEGAXLELV 66
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ ++R +D G Y C + G+ T+A++ +
Sbjct: 67 VRNLRPQDSGRYSC----SFGDQTTSATLTV 93
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF--GY 561
P F + L+N++ V NA C++ G P V+W+R K + +F GY
Sbjct: 3 PHFKEELRNLN-VRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 59
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ ++ V +D +Y +ATN G TAS++++ A + L + EG+ + L
Sbjct: 60 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLP-KTLEGMGAVHAL 115
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF--GY 561
P F + L+N++ V NA C++ G P V+W+R K + +F GY
Sbjct: 5 PHFKEELRNLN-VRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ ++ V +D +Y +ATN G TAS++++ A + L + EG+ + L
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLP-KTLEGMGAVHAL 117
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
+AP + ++ V + AHF R+ VG + W +NGV I+ S+R+ V
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 374 A-LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L + EDS + +A+N GE + + L V++K
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA-MDLSHVRAEDE 574
V +G +AHF R+ VG P + EW++N +E S RI V + + V ED
Sbjct: 17 VGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDS 74
Query: 575 GIYICKATNALGEAVTTASMKIKTK 599
+ KA N GE + A + ++ K
Sbjct: 75 ASIMVKAINIAGETSSHAFLLVQAK 99
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT- 695
IF ++ + T + +G AH+ RVV G P EW+ NGV+++ R + V
Sbjct: 8 IFERIQSQT--VGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 696 LDITKCVPADSGVYMCKAINRAGE 719
L I DS M KAIN AGE
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGE 87
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR----FTET 235
+ +AP +++ + +G AHF R++ D + EW+ N V I+ R + E
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKIERSDRIYWYWPED 59
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
N V D+ EDS +A+N G+ + LLV +K
Sbjct: 60 NVCELVIRDVTG---EDSASIMVKAINIAGETSSHAFLLVQAK 99
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
EEG + + C+ I D + +V W+ + LE+S + ++ G + + + D+G
Sbjct: 14 EEGGHVKYVCK-IENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGT 72
Query: 577 YICKATNALGEAVTTASMKIK 597
Y CK N GE + A + +K
Sbjct: 73 YRCKVVNDYGEDSSYAELFVK 93
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTY 123
E GH + CK+E D + +V W+ R + ++ ++ G L + D D GTY
Sbjct: 15 EGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTY 73
Query: 124 TCRAVNLVGFAEVQATLQCRG 144
C+ VN G A L +G
Sbjct: 74 RCKVVNDYGEDSSYAELFVKG 94
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 344 DSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
D +VTW ++ S + ++ G L K D GTY C+ VN+ GE + +
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88
Query: 404 TLFVE 408
LFV+
Sbjct: 89 ELFVK 93
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
EG Y C++ D + + W+ +L+ ++ + ++ G L + D G Y
Sbjct: 15 EGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTY 73
Query: 710 MCKAINRAGE 719
CK +N GE
Sbjct: 74 RCKVVNDYGE 83
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGV 255
+EG + C+ I D + +V W+ +++ ++ T G L + D G
Sbjct: 14 EEGGHVKYVCK-IENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGT 72
Query: 256 YTCRAVNALGQAVTSGNLLV 275
Y C+ VN G+ + L V
Sbjct: 73 YRCKVVNDYGEDSSYAELFV 92
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
A K R L ++ ++EGK + +C + GDP +V W +NEK L + K +
Sbjct: 112 AEKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNEKALAQTDHCNLKFE 169
Query: 559 FGYVA-MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
G A ++ V D G Y N G + ++ +
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 536 LKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595
LKV W N + S R+ T + + ++ D+G Y+ + + G+ ++
Sbjct: 33 LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD--GKTGHQKTVD 90
Query: 596 IKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM---EGQ 652
+ +A + E + Q L+Q A E R ++L G +++ EG+
Sbjct: 91 LSGQA-------YDEAYAEFQRLKQAAIA---EKNR-------ARVLGGLPDVVTIQEGK 133
Query: 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT-LDITKCVPADSGVYMC 711
+ + C V GDP W N L +++ + G I ADSG Y
Sbjct: 134 ALNLTCNV--WGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 712 KAINRAG 718
N+ G
Sbjct: 192 VVKNKYG 198
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI--KSGSRFTETNN 237
++ AP F LK+ +I EG F CR+ + K+ WF + I KS + +
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
G +L +D G YT A N G+ +G L+V + S
Sbjct: 63 DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ-ASNRVSTMHDF- 370
S AP F ++ + E F R+ G+ K K+ W ++G I S+ + D
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
G +L+ + +D G YT A N G + L V++ S
Sbjct: 64 GTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-DSSRITTKHDF-GY 561
P F L++ + EG F+CR+ G+P K+ WF++ K + S T + D G
Sbjct: 9 PFFEMKLKHYK-IFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
++ + +D+G Y A N G T + ++
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI--KSGSRFTETNNFGF 240
AP F LK+ +I EG F CR+ + K+ WF + I KS + + G
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 64
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+L +D G YT A N G+ +G L+V +
Sbjct: 65 CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQA 101
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 498 NATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-DSSRITTK 556
NAT P F L++ + EG F+CR+ G+P K+ WF++ K + S T +
Sbjct: 4 NATA--PFFEMKLKHY-KIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQ 58
Query: 557 HDF-GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
D G ++ + +D+G Y A N G T + ++
Sbjct: 59 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQ 100
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ-ASNRVSTMHDF- 370
+ AP F ++ + E F R+ G+ K K+ W ++G I S+ + D
Sbjct: 5 ATAPFFEMKLKHYKIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 62
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
G +L+ + +D G YT A N G + L V++
Sbjct: 63 GTCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQA 101
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 57/169 (33%), Gaps = 44/169 (26%)
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
R T N L LPED GVYTC N +G+ +H
Sbjct: 260 RITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP-----------------QKHSLK 302
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ-PMRDIHVAENQAAHFEARLIPVGDSKLKV 349
L TV AP + Q P + I V + Q ++ G V
Sbjct: 303 L-------------------TVVSAPKYEQKPEKVIVVKQGQDVTIPCKV--TGLPAPNV 341
Query: 350 TWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE 398
W N P+ +T+ D G V K D G Y CRA NE G+
Sbjct: 342 VWSHNAKPLSGGR--ATVTDSGLVIKGVKNG---DKGYYGCRATNEHGD 385
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P + + + + V++G++ C++ G P V W N KPL T D G V
Sbjct: 309 PKYEQKPEKVIVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSGGRATVT--DSGLV- 363
Query: 564 MDLSHVRAEDEGIYICKATNALGE 587
+ V+ D+G Y C+ATN G+
Sbjct: 364 --IKGVKNGDKGYYGCRATNEHGD 385
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 351 WLRNGVPIQAS--NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE 398
+ +NG + + +R++ + L FK T PED G YTC N +G+
Sbjct: 246 YFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK 295
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 21/145 (14%)
Query: 530 PVGDPTLKVEWFRNEKPLEDS--SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGE 587
P+G P +F+N K + + RIT + + EDEG+Y C+ N +G+
Sbjct: 240 PMGYPN----YFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK 295
Query: 588 AVTTASMKIKTKAGLQLETQHPEG---LKKIQELEQPAS----PMPQEPERQYEKPIFTQ 640
S+K+ + + E Q PE +K+ Q++ P P P KP+
Sbjct: 296 P-QKHSLKLTVVSAPKYE-QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG 353
Query: 641 LLTGTSE------IMEGQSAHYDCR 659
T T + G +Y CR
Sbjct: 354 RATVTDSGLVIKGVKNGDKGYYGCR 378
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
A K R L ++ ++EGK + +C + GDP +V W +NEK L K +
Sbjct: 217 AEKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNEKALASDDHCNLKFE 274
Query: 559 FGYVA-MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
G A ++ V D G Y N G + ++ +
Sbjct: 275 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL---EDSSRITTKHDFGYVAMDLSHVRAE 572
V+EG F CR GDP + W K L + + R+T D +++ + + +
Sbjct: 397 VDEGHTVQFVCR--ADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD---GTLEVRYAQVQ 451
Query: 573 DEGIYICKATNALGEAVTTASMKIKT 598
D G Y+C A NA G A + +++
Sbjct: 452 DNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWL---RNGVPIQASNRVSTM 367
T +A + + + + V E F R GD + WL ++ V +++ R++
Sbjct: 381 TCRRARIRDRKAQQVFVDEGHTVQFVCR--ADGDPPPAILWLSPRKHLVSAKSNGRLTVF 438
Query: 368 HDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
D L +Y +D+GTY C A N G + L V S
Sbjct: 439 PD---GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-DSSRITTKHDFGY 561
RP F + ++ V+EGK C++ G PT + W + KP+ DS+ + G
Sbjct: 9 RPHFLQAPGDL-TVQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
++ + V + D GIY C ATN G+ + + + K
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH-VQHDFGY 693
+P F Q G + EG+ DC+V G PT W ++G ++ S + + G
Sbjct: 9 RPHFLQA-PGDLTVQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 694 VTLDITKCVPADSGVYMCKAINRAGE 719
+L I D+G+Y C A NRAG+
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQ 91
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIK--SGSRFTETNNFG 239
P F + + ++EG+ +C++ +P D + W + P++ S + N G
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD----LSWQLDGKPVRPDSAHKMLVREN-G 64
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
+L I D+G+YTC A N GQ S L+V +K+S
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARL--IPVGDSKLKVTWLRNGVPIQA-SNRVSTMHDFGY 372
P F Q D+ V E + + ++ +P D ++W +G P++ S + + G
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD----LSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+L + D+G YTC A N G+ S L V +K S
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 120/318 (37%), Gaps = 48/318 (15%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH- 368
+T + P F + +D A F + GD K +VTW + G + S R T+
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVN-SQRFETIEF 57
Query: 369 --DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKI 426
G V P D Y C A N +GE + L V + L N ++
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 427 QNLEDTSRFKRKXXXXXXXTQQPSFTVQLNG---PTELVEGEGTIITDTQHPKGLEKIRK 483
+ +E T R + P + P + G I Q G +I
Sbjct: 118 KVVERT----RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRI---KQLRSGALQIES 170
Query: 484 LEDTEPHKRPEVDDNATKQRPVFTKP------LQNIDA----------VEEGKNAHFSCR 527
E+T+ K V N+ R ++ P +QN+ + G N + +C
Sbjct: 171 SEETDQGKYECVATNSAGVR--YSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITC- 227
Query: 528 LIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF--GYVAMDLSHVRAEDEGIYICKATNAL 585
+ VG P V+W ++ + +T + D G ++L+ V+ D Y C A ++L
Sbjct: 228 -VAVGSPMPYVKW------MQGAEDLTPEDDMPVGRNVLELTDVK--DSANYTCVAMSSL 278
Query: 586 G--EAVTTASMKIKTKAG 601
G EAV ++K KAG
Sbjct: 279 GVIEAVAQITVKSLPKAG 296
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 76/206 (36%), Gaps = 43/206 (20%)
Query: 513 IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
+ VE + A C G+P ++ WF++ P++ S+ A+ +
Sbjct: 117 LKVVERTRTATMLCAA--SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
D+G Y C ATN+ G ++ + A L + Q+
Sbjct: 175 DQGKYECVATNSAG-------VRYSSPANLYVRVQN------------------------ 203
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
P F+ +L + EIM G + + C V VG P +W +L V G
Sbjct: 204 -VAPRFS-ILPMSHEIMPGGNVNITC--VAVGSPMPYVKWMQGAEDLTPEDDMPV----G 255
Query: 693 YVTLDITKCVPADSGVYMCKAINRAG 718
L++T DS Y C A++ G
Sbjct: 256 RNVLELTDV--KDSANYTCVAMSSLG 279
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 89/251 (35%), Gaps = 53/251 (21%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
ET + P F K+ G A F C+ D +V W + S RF ET
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNS-QRF-ETIE 56
Query: 238 FGFVALDIMQC----LPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSR 293
F A +++ P D VY C A N++G+ + VH+K ++ E Q
Sbjct: 57 FDESAGAVLRIQPLRTPRDENVYECVAQNSVGE------ITVHAKLTVLREDQLPSGFPN 110
Query: 294 LQ---QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
+ QL+ RT+ + S G+ ++T
Sbjct: 111 IDMGPQLKVVERTRTATMLCAAS-----------------------------GNPDPEIT 141
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
W ++ +P+ S + AL + + D G Y C A N G + S
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG-------VRYSSP 194
Query: 411 ASLQLDTQNEA 421
A+L + QN A
Sbjct: 195 ANLYVRVQNVA 205
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 71/202 (35%), Gaps = 36/202 (17%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA-MDLSHVRA-EDEGI 576
G A F C+ GDP +V W + K + T + D A + + +R DE +
Sbjct: 21 GGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENV 78
Query: 577 YICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636
Y C A N++GE + + K + E Q P G I P + ER
Sbjct: 79 YECVAQNSVGE------ITVHAKLTVLREDQLPSGFPNID-----MGPQLKVVER----- 122
Query: 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTL 696
T T+ ++ S G+P WF + + + + L
Sbjct: 123 ------TRTATMLCAAS----------GNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL 166
Query: 697 DITKCVPADSGVYMCKAINRAG 718
I D G Y C A N AG
Sbjct: 167 QIESSEETDQGKYECVATNSAG 188
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ-ASNRVSTMHD-FG 371
+AP+F + V E + E ++ + KL W RN +Q ++R+S D G
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKL--FWKRNNEMVQFNTDRISLYQDNTG 71
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
V L K +D+G YT AVNE G ++ L V ++ + L
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPA 704
+ +++EG S +C++ + P + ++ V+ Q + G VTL I
Sbjct: 24 SKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKK 83
Query: 705 DSGVYMCKAINRAG 718
D+G Y A+N AG
Sbjct: 84 DAGWYTVSAVNEAG 97
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--VPIKSGSRFTETNNFG 239
+AP+F ++ ++ EG EC++ + K+ W NN V + +N G
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPP--KLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
V L I +D+G YT AVN G + L V ++
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
FT+ L+N +A E G A C L + VEW++ + L D R + + D +
Sbjct: 22 FTEGLRNEEATE-GATAVLRCELSKMA----PVEWWKGHETLRDGDRHSLRQDGARCELQ 76
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + AED G Y+C G+ T+A + ++
Sbjct: 77 IRGLVAEDAGEYLCMC----GKERTSAMLTVR 104
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 179 TTTQAPI-FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
T PI FT L+N E EG A C L ++ VEW+ + ++ G R + +
Sbjct: 14 TVRALPIKFTEGLRNEEATEGATAVLRCELSKMA----PVEWWKGHETLRDGDRHSLRQD 69
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
L I + ED+G Y C G+ TS L V + S
Sbjct: 70 GARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPS 108
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578
G+N C +G+P + W + +P+ ++ I+T + + +++ EDEGIY
Sbjct: 128 GQNVTLEC--FALGNPVPDIRWRKVLEPMPSTAEISTSG----AVLKIFNIQLEDEGIYE 181
Query: 579 CKATNALGE 587
C+A N G+
Sbjct: 182 CEAENIRGK 190
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
FT L+N E EG A +C L VEW ++ G +++ + L I
Sbjct: 10 FTEGLRNEEAMEGATATLQCEL----SKAAPVEWRKGLEALRDGDKYSLRQDGAVCELQI 65
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
D+GVY+C GQ TS L V +
Sbjct: 66 HGLAMADNGVYSC----VCGQERTSATLTVRA 93
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
FT+ L+N +A+E G A C L VEW + + L D + + + D +
Sbjct: 10 FTEGLRNEEAME-GATATLQCEL----SKAAPVEWRKGLEALRDGDKYSLRQDGAVCELQ 64
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHP 609
+ + D G+Y C G+ T+A++ ++ +E P
Sbjct: 65 IHGLAMADNGVYSC----VCGQERTSATLTVRALPARFIEDSGP 104
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 638 FTQLLTGTSEIMEGQSAHYDC---RVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
FT+ L E MEG +A C + PV EW L+ G ++ ++ D
Sbjct: 10 FTEGLR-NEEAMEGATATLQCELSKAAPV-------EWRKGLEALRDGDKYSLRQDGAVC 61
Query: 695 TLDITKCVPADSGVYMC 711
L I AD+GVY C
Sbjct: 62 ELQIHGLAMADNGVYSC 78
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 88/264 (33%), Gaps = 70/264 (26%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEK---PLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
G C +I GDP + W +N++ P+ SR+ A+ +S ++ D G
Sbjct: 136 GDTVLLKCEVI--GDPMPTIHWQKNQQDLNPIPGDSRVVV---LPSGALQISRLQPGDSG 190
Query: 576 IYICKATN-ALGEAVTTASMKIKTKAGLQLE---TQHP------EGLKKIQELEQPASPM 625
+Y C A N A A ++I + GL + Q P EG + E P
Sbjct: 191 VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250
Query: 626 PQEPERQYEKPIFTQ-----LLTGT----SEIMEGQSAHYDCRV---------------- 660
P + E+ I + LL G+ S + + S Y C V
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL 310
Query: 661 VP------------------------VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTL 696
VP G P W NG + F + G L
Sbjct: 311 VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQI---VGGSNL 367
Query: 697 DITKCVPADSGVYMCKAINRAGEA 720
I V +D G Y C A N AG A
Sbjct: 368 RILGVVKSDEGFYQCVAENEAGNA 391
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 100/303 (33%), Gaps = 77/303 (25%)
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
AL I P DSG Y C A N T T NE +++ L D
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPAS-----------------TRTGNEA---EVRILSDPG 217
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
+++ +++ + I EG+ A EC + + W I+
Sbjct: 218 LHRQLYFLQRPSNVIAI-----------EGKDAVLECCVSGYPPPSFT--WLRGEEVIQL 264
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288
S+ + + G L I +DSG YTC T
Sbjct: 265 RSK--KYSLLGGSNLLISNVTDDDSGTYTC------------------------VVTYKN 298
Query: 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK 348
E++S +L TV P F +++ E+ FE + G
Sbjct: 299 ENISASAEL-------------TVLVPPWFLNHPSNLYAYESMDIEFECAV--SGKPVPT 343
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
V W++NG + S+ + G L D G Y C A NE G A +S+ L V
Sbjct: 344 VNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Query: 409 SKA 411
A
Sbjct: 401 KPA 403
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 70 FECKL--EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
FEC + +PV V W KNG V F+ + G L I+ + D G Y C A
Sbjct: 332 FECAVSGKPVP----TVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVA 384
Query: 128 VNLVGFAEVQATL 140
N G A+ A L
Sbjct: 385 ENEAGNAQSSAQL 397
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA---- 571
V +G+ A +C+ G PT +EW++ + +E H + L +R
Sbjct: 21 VSKGEPATLNCK--AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR 78
Query: 572 ---EDEGIYICKATNALGEAVT-TASMKI 596
DEG+Y+C A N LGEAV+ AS+++
Sbjct: 79 KSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 87/241 (36%), Gaps = 47/241 (19%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
ET + P F K+ G A F C+ D +V W + S RF ET
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNS-QRF-ETIE 56
Query: 238 FGFVALDIMQC----LPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSR 293
F A +++ P D VY C A N++G+ + VH+K ++ E Q
Sbjct: 57 FDESAGAVLRIQPLRTPRDENVYECVAQNSVGE------ITVHAKLTVLREDQLPSGFPN 110
Query: 294 LQ---QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
+ QL+ RT+ + S G+ ++T
Sbjct: 111 IDMGPQLKVVERTRTATMLCAAS-----------------------------GNPDPEIT 141
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STLFVES 409
W ++ +P+ S + AL + + D G Y C A N G +S + L+V
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
Query: 410 K 410
+
Sbjct: 202 R 202
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 75/225 (33%), Gaps = 44/225 (19%)
Query: 66 GHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDT----IPEDSG 121
G A F C+ D +V W K G+ V RF I +F A ++ P D
Sbjct: 22 GVASFVCQA--TGDPKPRVTWNKKGKKVN-SQRFETI-EFDESAGAVLRIQPLRTPRDEN 77
Query: 122 TYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTT 181
Y C A N VG V A L +L Q +G I
Sbjct: 78 VYECVAQNSVGEITVHAKLT------VLREDQLPSGFPNIDM------------------ 113
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGF 240
++K +R L S N ++ WF + +P+ +
Sbjct: 114 ----------GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS 163
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSKKSIQTE 284
AL I D G Y C A N+ G +S NL V ++ T+
Sbjct: 164 GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVRRVAGTK 208
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 71/202 (35%), Gaps = 36/202 (17%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA-MDLSHVRA-EDEGI 576
G A F C+ GDP +V W + K + T + D A + + +R DE +
Sbjct: 21 GGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENV 78
Query: 577 YICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636
Y C A N++GE + + K + E Q P G I P + ER
Sbjct: 79 YECVAQNSVGE------ITVHAKLTVLREDQLPSGFPNID-----MGPQLKVVER----- 122
Query: 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTL 696
T T+ ++ S G+P WF + + + + L
Sbjct: 123 ------TRTATMLCAAS----------GNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL 166
Query: 697 DITKCVPADSGVYMCKAINRAG 718
I D G Y C A N AG
Sbjct: 167 QIESSEETDQGKYECVATNSAG 188
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 513 IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
+ VE + A C G+P ++ WF++ P++ S+ A+ +
Sbjct: 117 LKVVERTRTATMLCAA--SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 573 DEGIYICKATNALG 586
D+G Y C ATN+ G
Sbjct: 175 DQGKYECVATNSAG 188
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNF 377
F +P+R + AE E + + +G+ V W + G + AS R+S D L
Sbjct: 20 FPRPVRVVSGAEA-----ELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 378 KYTYPEDSGTYTCRAVN 394
P D+G Y CRA N
Sbjct: 75 TAALPTDAGVYVCRARN 91
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
++ G A C V +G+P W G +L R D L +T +P D+G
Sbjct: 26 VVSGAEAELKC--VVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 83
Query: 708 VYMCKAIN 715
VY+C+A N
Sbjct: 84 VYVCRARN 91
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
F +P++ V G A C + +G+P V W + + L S R++ D +
Sbjct: 20 FPRPVR----VVSGAEAELKC--VVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 73
Query: 566 LSHVRAEDEGIYICKATN 583
L+ D G+Y+C+A N
Sbjct: 74 LTAALPTDAGVYVCRARN 91
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 86/238 (36%), Gaps = 47/238 (19%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
ET + P F K+ G A F C+ D +V W + S RF ET
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNS-QRF-ETIE 56
Query: 238 FGFVALDIMQC----LPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSR 293
F A +++ P D VY C A N++G+ + VH+K ++ E Q
Sbjct: 57 FDESAGAVLRIQPLRTPRDENVYECVAQNSVGE------ITVHAKLTVLREDQLPSGFPN 110
Query: 294 LQ---QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
+ QL+ RT+ + S G+ ++T
Sbjct: 111 IDMGPQLKVVERTRTATMLCAAS-----------------------------GNPDPEIT 141
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STLFV 407
W ++ +P+ S + AL + + D G Y C A N G +S + L+V
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV 199
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 71/202 (35%), Gaps = 36/202 (17%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA-MDLSHVRA-EDEGI 576
G A F C+ GDP +V W + K + T + D A + + +R DE +
Sbjct: 21 GGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENV 78
Query: 577 YICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636
Y C A N++GE + + K + E Q P G I P + ER
Sbjct: 79 YECVAQNSVGE------ITVHAKLTVLREDQLPSGFPNID-----MGPQLKVVER----- 122
Query: 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTL 696
T T+ ++ S G+P WF + + + + L
Sbjct: 123 ------TRTATMLCAAS----------GNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL 166
Query: 697 DITKCVPADSGVYMCKAINRAG 718
I D G Y C A N AG
Sbjct: 167 QIESSEETDQGKYECVATNSAG 188
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 513 IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
+ VE + A C G+P ++ WF++ P++ S+ A+ +
Sbjct: 117 LKVVERTRTATMLCAA--SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 573 DEGIYICKATNALG 586
D+G Y C ATN+ G
Sbjct: 175 DQGKYECVATNSAG 188
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNF 377
F +P+R + AE E + + +G+ V W + G + AS R+S D L
Sbjct: 19 FPRPVRVVSGAEA-----ELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 73
Query: 378 KYTYPEDSGTYTCRAVN 394
P D+G Y CRA N
Sbjct: 74 TAALPTDAGVYVCRARN 90
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
PM Q P F + ++ G A C V +G+P W G +L
Sbjct: 2 PMKASSGDQGSPPCFLRF-PRPVRVVSGAEAELKC--VVLGEPPPVVVWEKGGQQLAASE 58
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715
R D L +T +P D+GVY+C+A N
Sbjct: 59 RLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
F +P++ V G A C + +G+P V W + + L S R++ D +
Sbjct: 19 FPRPVR----VVSGAEAELKC--VVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 566 LSHVRAEDEGIYICKATN 583
L+ D G+Y+C+A N
Sbjct: 73 LTAALPTDAGVYVCRARN 90
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P F + R + V A E + + +G+ V W + G + AS R+S D L
Sbjct: 15 PCFLRRPRPVRVVSGAEA--ELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 376 NFKYTYPEDSGTYTCRAVN 394
P D+G Y CRA N
Sbjct: 73 LLTAALPTDAGVYVCRARN 91
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
++ G A C V +G+P W G +L R D L +T +P D+G
Sbjct: 26 VVSGAEAELKC--VVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 83
Query: 708 VYMCKAIN 715
VY+C+A N
Sbjct: 84 VYVCRARN 91
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V G A C + +G+P V W + + L S R++ D + L+ D G
Sbjct: 26 VVSGAEAELKC--VVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 83
Query: 576 IYICKATN 583
+Y+C+A N
Sbjct: 84 VYVCRARN 91
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 37.4 bits (85), Expect = 0.033, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 320 QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKY 379
Q + D+ V + A F+ V D K+ W +NGV ++ S R++ H + L
Sbjct: 13 QDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDD 69
Query: 380 TYPEDSGTYT 389
PED G YT
Sbjct: 70 VRPEDEGDYT 79
Score = 36.6 bits (83), Expect = 0.057, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG 254
+K ++A F+C VSD + +W+ N V ++ R T ++ F L I PED G
Sbjct: 20 VKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEG 76
Query: 255 VYT 257
YT
Sbjct: 77 DYT 79
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 510 LQNID--AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS 567
LQ+I V+ + A F C V D + +W++N + S RIT H + + +
Sbjct: 12 LQDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVID 68
Query: 568 HVRAEDEGIY 577
VR EDEG Y
Sbjct: 69 DVRPEDEGDY 78
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYT 124
A F+C+ V+D + +W+KNG V R H + L I D PED G YT
Sbjct: 25 QAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYT 79
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
+ + A + C V D + +W+ NGVE++ R + H + L I P D G
Sbjct: 20 VKAAEQAVFKCEV---SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEG 76
Query: 708 VY 709
Y
Sbjct: 77 DY 78
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNF 377
F++ R + VA A FEA G +KV W R G I ASN+ + L
Sbjct: 11 FSKKPRSVEVAAGSPAVFEAETERAG---VKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 378 KYTYPEDSGTYTCRA 392
+ P D G+Y A
Sbjct: 68 REVGPADQGSYAVIA 82
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 77/229 (33%), Gaps = 69/229 (30%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFG-----YVALDII--DTIPEDSGT 122
F+C + L+ W KNG+ F+P H G Y II +P D G
Sbjct: 36 FKCPSSGTPNPTLR--WLKNGK------EFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
YTC +NE G Y D + E +
Sbjct: 88 YTC-------------------------IVENEYGSINHTYQLD---------VVERSPH 113
Query: 183 APIFTTSL-KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-----------NNVP----I 226
PI L N + G F C++ SD ++W +N+P +
Sbjct: 114 RPILQAGLPANKTVALGSNVEFMCKV--YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQIL 171
Query: 227 KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
K+ T + L + ED+G YTC A N++G + S L V
Sbjct: 172 KTAG--VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
RP+ L V G N F C++ DP ++W ++ +E + + Y
Sbjct: 113 HRPILQAGLPANKTVALGSNVEFMCKVY--SDPQPHIQWLKH---IEVNGSKIGPDNLPY 167
Query: 562 V----------------AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
V + L +V ED G Y C A N++G + +A + +
Sbjct: 168 VQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 RFRPIHDFGYVALDIIDT-IPEDSGTYTCRAVNLVGFAEVQATLQCR 143
RF I+ Y L+I++ I ED G Y C A N +G A V L+ R
Sbjct: 143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-----EDSSRITTKHDFGYVAMDLSHVR-A 571
EG++A C+ VG P + W + E + S R + Y +++ +++
Sbjct: 106 EGQDAMMYCK--SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT 163
Query: 572 EDEGIYICKATNALGEAVTTASMKIK 597
ED G Y C ATN++G A + ++++
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLRVR 189
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 228 SGSRFTETNNFGFVALDIMQC-LPEDSGVYTCRAVNALGQAVTSGNLLV 275
S RF N + L+I+ + ED G Y C A N++G A S L V
Sbjct: 140 SSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR--NGVPIQASN---RVST 366
V AP T R + E Q A + VG + W + NGV + SN R
Sbjct: 89 VKAAPDITGHKRSENKNEGQDAMMYCK--SVGYPHPEWMWRKKENGVFEEISNSSGRFFI 146
Query: 367 MHDFGYVALNF-KYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
++ Y LN ED G Y C A N +G A S+ L V
Sbjct: 147 INKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-DSSRITTKHDFGYV 562
P F + +N+ +++EG+ ++ G P V W+ N + ++ D + G
Sbjct: 6 PRFIQVPENM-SIDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
++ VRA D G Y C A N GEA T + + K
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 321 PMRDIHVAENQA--------AHFEARLIPVGDSKLKVTWLRNGVPIQASN-RVSTMHDFG 371
P R I V EN + F+ +P D V+W NG +Q+ + + + G
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPD----VSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+L F+ D+G Y C A N GEA + L V +K
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH--VQHDFGY 693
P F Q+ S I EG+ D +V G P W++NG ++ H + + G
Sbjct: 6 PRFIQVPENMS-IDEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQ-SDDLHKMIVSEKGL 61
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEA 720
+L +D+G Y C A NRAGEA
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEA 88
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 72/215 (33%), Gaps = 67/215 (31%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFG-----YVALDII--DTIPEDSGTYTCRAVNLVGFAEV 136
+ W KNG+ F+P H G Y II +P D G YTC
Sbjct: 49 LRWLKNGK------EFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC----------- 91
Query: 137 QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSL-KNCEI 195
+NE G Y D + E + PI L N +
Sbjct: 92 --------------IVENEYGSINHTYQLD---------VVERSPHRPILQAGLPANKTV 128
Query: 196 KEGQRAHFECRLIPVSDNTMKVEWFH-----------NNVP----IKSGSRFTETNNFGF 240
G F C++ SD ++W +N+P +K+ T +
Sbjct: 129 ALGSNVEFMCKV--YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAG--VNTTDKEM 184
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + ED+G YTC A N++G + S L V
Sbjct: 185 EVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
RP+ L V G N F C++ DP ++W ++ +E + + Y
Sbjct: 114 HRPILQAGLPANKTVALGSNVEFMCKVY--SDPQPHIQWLKH---IEVNGSKIGPDNLPY 168
Query: 562 V----------------AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
V + L +V ED G Y C A N++G + +A + +
Sbjct: 169 VQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 72/215 (33%), Gaps = 67/215 (31%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFG-----YVALDII--DTIPEDSGTYTCRAVNLVGFAEV 136
+ W KNG+ F+P H G Y II +P D G YTC
Sbjct: 48 LRWLKNGK------EFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC----------- 90
Query: 137 QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSL-KNCEI 195
+NE G Y D + E + PI L N +
Sbjct: 91 --------------IVENEYGSINHTYQLD---------VVERSPHRPILQAGLPANKTV 127
Query: 196 KEGQRAHFECRLIPVSDNTMKVEWFH-----------NNVP----IKSGSRFTETNNFGF 240
G F C++ SD ++W +N+P +K+ T +
Sbjct: 128 ALGSNVEFMCKV--YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAG--VNTTDKEM 183
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + ED+G YTC A N++G + S L V
Sbjct: 184 EVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
RP+ L V G N F C++ DP ++W ++ +E + + Y
Sbjct: 113 HRPILQAGLPANKTVALGSNVEFMCKVY--SDPQPHIQWLKH---IEVNGSKIGPDNLPY 167
Query: 562 V----------------AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
V + L +V ED G Y C A N++G + +A + +
Sbjct: 168 VQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 501 KQRPVFTK-PLQNIDA----VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT 555
K RP F P+ ++ + EG+ +C + V ++ W R + + +
Sbjct: 203 KVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSS-SVYSTWKRENSQTKLQEKYNS 261
Query: 556 KH--DFGY---VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQL------ 604
H DF Y + +S R D G+++C A N G A T ++++ K + +
Sbjct: 262 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINT 321
Query: 605 --ETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFT 639
E + I E E A P P+ + Y FT
Sbjct: 322 TVFVNDGENVDLIVEYE--AFPKPEHQQWIYMNRTFT 356
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH--DFGY---VTLDITKCV 702
+ EG+ C + V ++ W + K+ +++ H DF Y TL I+
Sbjct: 223 LREGEEFTVTCTIKDVSS-SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSAR 281
Query: 703 PADSGVYMCKAINRAGEA 720
DSGV+MC A N G A
Sbjct: 282 VNDSGVFMCYANNTFGSA 299
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 345 SKLKVTWLRNGVPIQASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCRAVNELGEA 399
S + TW R + + ++ H DF Y L DSG + C A N G A
Sbjct: 240 SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA 299
Query: 400 VTSSTLFVESKASLQL 415
++TL V K + +
Sbjct: 300 NVTTTLEVVDKGFINI 315
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIH--DFGY---VALDIIDTI 116
LRE C ++ V+ S++ W + + ++ H DF Y L I
Sbjct: 223 LREGEEFTVTCTIKDVS-SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSAR 281
Query: 117 PEDSGTYTCRAVNLVGFAEVQATLQ 141
DSG + C A N G A V TL+
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLE 306
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF-- 240
P+ + S + ++EG+ C + VS + W N K ++ ++ F
Sbjct: 211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYST-WKRENSQTKLQEKYNSWHHGDFNY 269
Query: 241 ---VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQ 282
L I DSGV+ C A N G A + L V K I
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFIN 314
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 501 KQRPVFTK-PLQNIDA----VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT 555
K RP F P+ ++ + EG+ +C + V ++ W R + + +
Sbjct: 178 KVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSS-SVYSTWKRENSQTKLQEKYNS 236
Query: 556 KH--DFGY---VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQL 604
H DF Y + +S R D G+++C A N G A T ++++ K + +
Sbjct: 237 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINI 290
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH--DFGY---VTLDITKCV 702
+ EG+ C + V ++ W + K+ +++ H DF Y TL I+
Sbjct: 198 LREGEEFTVTCTIKDVSS-SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSAR 256
Query: 703 PADSGVYMCKAINRAGEA 720
DSGV+MC A N G A
Sbjct: 257 VNDSGVFMCYANNTFGSA 274
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 345 SKLKVTWLRNGVPIQASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCRAVNELGEA 399
S + TW R + + ++ H DF Y L DSG + C A N G A
Sbjct: 215 SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA 274
Query: 400 VTSSTLFVESKASLQL 415
++TL V K + +
Sbjct: 275 NVTTTLEVVDKGFINI 290
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIH--DFGY---VALDIIDTI 116
LRE C ++ V+ S++ W + + ++ H DF Y L I
Sbjct: 198 LREGEEFTVTCTIKDVS-SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSAR 256
Query: 117 PEDSGTYTCRAVNLVGFAEVQATLQ 141
DSG + C A N G A V TL+
Sbjct: 257 VNDSGVFMCYANNTFGSANVTTTLE 281
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF-- 240
P+ + S + ++EG+ C + VS + W N K ++ ++ F
Sbjct: 186 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYST-WKRENSQTKLQEKYNSWHHGDFNY 244
Query: 241 ---VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQ 282
L I DSGV+ C A N G A + L V K I
Sbjct: 245 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFIN 289
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 82/220 (37%), Gaps = 40/220 (18%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P FT+ + V G A F C+ GDP K+ W + K + + + D G +
Sbjct: 7 PRFTRTPVDQTGVSGGV-ASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 564 -MDLSHVRA-EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + +R DE IY C A+N +GE + + T+ + E Q P G I
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGE------ISVSTRLTVLREDQIPRGFPTID----- 112
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
P + ER T T+ ++ S G+P WF + + +
Sbjct: 113 MGPQLKVVER-----------TRTATMLCAAS----------GNPDPEITWFKDFLPVDT 151
Query: 682 GS---RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
+ R L I + +D G Y C A N AG
Sbjct: 152 SNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAG 191
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 77/222 (34%), Gaps = 45/222 (20%)
Query: 66 GHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIH-DFGYVALDIIDTI--PEDSGT 122
G A F C+ D K+ W K G+ V+ RF I D G ++ I + P D
Sbjct: 22 GVASFICQA--TGDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSVLRIQPLRTPRDEAI 78
Query: 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
Y C A N VG V L +L Q G I
Sbjct: 79 YECVASNNVGEISVSTRLT------VLREDQIPRGFPTIDM------------------- 113
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGS---RFTETNNF 238
++K +R L S N ++ WF + +P+ + + R + +
Sbjct: 114 ---------GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSE 164
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSKK 279
AL I Q D G Y C A N+ G ++ NL V K
Sbjct: 165 SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 343 GDSKLKVTWLRNGVPIQASN---RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
G+ ++TW ++ +P+ SN R+ + AL + + D G Y C A N G
Sbjct: 134 GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAG 191
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 36.2 bits (82), Expect = 0.084, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
FT LK E EG A +C L V+ VEW ++ G R++ + L I
Sbjct: 11 FTQDLKTKEASEGATATLQCELSKVA----PVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
D+G Y+C GQ TS L V + + TE
Sbjct: 67 HDLSVADAGEYSCMC----GQERTSATLTVRALPARFTE 101
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
FT+ L+ +A EG A C L V VEW + + L D R + K D +
Sbjct: 11 FTQDLKTKEA-SEGATATLQCELSKVA----PVEWKKGPETLRDGGRYSLKQDGTRCELQ 65
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + D G Y C G+ T+A++ ++
Sbjct: 66 IHDLSVADAGEYSCMC----GQERTSATLTVR 93
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 638 FTQLLTGTSEIMEGQSAHYDC---RVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
FTQ L T E EG +A C +V PV EW L+ G R+ ++ D
Sbjct: 11 FTQDLK-TKEASEGATATLQCELSKVAPV-------EWKKGPETLRDGGRYSLKQDGTRC 62
Query: 695 TLDITKCVPADSGVYMC 711
L I AD+G Y C
Sbjct: 63 ELQIHDLSVADAGEYSC 79
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 76/246 (30%), Gaps = 62/246 (25%)
Query: 496 DDNATKQRPVFTKPL---QNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR 552
D P +T+P + + AV F C G+PT + W +N + R
Sbjct: 4 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA--AGNPTPSISWLKNGREFRGEHR 61
Query: 553 ---ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHP 609
I +H + M+ V D G Y C N G T ++ +
Sbjct: 62 IGGIKLRHQQWSLVME--SVVPSDRGNYTCVVENKFGSIRQTYTLDVL------------ 107
Query: 610 EGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR 669
ER +PI L + G + C+V P
Sbjct: 108 --------------------ERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP--H 145
Query: 670 FEWF----VNGVE-----------LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714
+W VNG + LK V+ D V L + D G Y+C+A
Sbjct: 146 IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD---VRLRLANVSERDGGEYLCRAT 202
Query: 715 NRAGEA 720
N G A
Sbjct: 203 NFIGVA 208
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 315 APVFTQPMR-DIHVAENQAAH-FEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH-DFG 371
AP +T+P R D + AA+ R G+ ++WL+NG + +R+ +
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+L + P D G YTC N+ G + TL V
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 71/224 (31%), Gaps = 68/224 (30%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYV-------ALDIIDTIPEDSGTYTCRAVNLVGFAEV 136
+ W KNGR FR H G + +L + +P D G YTC N G
Sbjct: 47 ISWLKNGR------EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 100
Query: 137 QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSL-KNCEI 195
TL + E + PI L N
Sbjct: 101 TYTLD----------------------------------VLERSPHRPILQAGLPANQTA 126
Query: 196 KEGQRAHFECRLIPVSDNTMKVEWF-HNNVPIKSGSR--------------FTETNNFGF 240
G F C++ SD ++W H V +GS+ + +
Sbjct: 127 VLGSDVEFHCKVY--SDAQPHIQWLKHVEV---NGSKVGPDGTPYVTVLKSWISESVEAD 181
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
V L + D G Y CRA N +G A + L VH ++ + E
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 70 FECKLEPVTDSNLKVEWFK-----------NGRP-VTIGHRFRPIHDFGYVALDIIDTIP 117
F CK+ +D+ ++W K +G P VT+ + V L + +
Sbjct: 134 FHCKV--YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE 191
Query: 118 EDSGTYTCRAVNLVGFAEVQATLQCRG 144
D G Y CRA N +G AE L G
Sbjct: 192 RDGGEYLCRATNFIGVAEKAFWLSVHG 218
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 19/168 (11%)
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L ++ EDSG Y+CR Q +T L S + + + + + G
Sbjct: 63 LQVLNASHEDSGAYSCR------QRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTG-- 114
Query: 303 QRTSIIEDTVSQAPVFTQP--MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
+ AP +T+P M +A A R G+ ++WL+NG +
Sbjct: 115 --------VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG 166
Query: 361 SNRVSTMH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+R+ + +L + P D G YTC N+ G + TL V
Sbjct: 167 EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 214
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 69/216 (31%), Gaps = 69/216 (31%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYV-------ALDIIDTIPEDSGTYTCRAVNLVGFAEV 136
+ W KNGR FR H G + +L + +P D G YTC N G
Sbjct: 155 ISWLKNGR------EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208
Query: 137 QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSL-KNCEI 195
TL + E + PI L N
Sbjct: 209 TYTLD----------------------------------VLERSPHRPILQAGLPANQTA 234
Query: 196 KEGQRAHFECRLIPVSDNTMKVEWF-HNNVPIKSGSRF---------------TETNNFG 239
G F C++ SD ++W H V +GS+ T +
Sbjct: 235 VLGSDVEFHCKVY--SDAQPHIQWLKHVEV---NGSKVGPDGTPYVTVLKTAGANTTDKE 289
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + ED+G YTC A N++G + S L+V
Sbjct: 290 LEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 504 PVFTKPL---QNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR---ITTKH 557
P +T+P + + AV F C G+PT + W +N + R I +H
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPA--AGNPTPSISWLKNGREFRGEHRIGGIKLRH 177
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ M+ V D G Y C N G T ++ +
Sbjct: 178 QQWSLVME--SVVPSDRGNYTCVVENKFGSIRQTYTLDV 214
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 659 RVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV-------TLDITKCVPADSGVYMC 711
R G+PT W NG E F +H G + +L + VP+D G Y C
Sbjct: 144 RCPAAGNPTPSISWLKNGRE------FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 712 KAINRAG 718
N+ G
Sbjct: 198 VVENKFG 204
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V G + C I G PT + W++ L K + A+ +++V ED G
Sbjct: 234 VLRGMDLLLEC--IASGVPTPDIAWYKKGGDLPSDK---AKFENFNKALRITNVSEEDSG 288
Query: 576 IYICKATNALGEAVTTASMKIK 597
Y C A+N +G T S+++K
Sbjct: 289 EYFCLASNKMGSIRHTISVRVK 310
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 556 KHDFGYV---AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600
+ DF Y + +S R +D G+++C A N G A T ++K+ K
Sbjct: 243 RGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
F +KN E +EG A +C L ++ VEW + ++ G R++ + L I
Sbjct: 11 FIEDVKNQEAREGATAVLQCEL----NSAAPVEWRKGSETLRDGDRYSLRQDGTKCELQI 66
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
D+G Y+C GQ TS L V +
Sbjct: 67 RGLAMADTGEYSC----VCGQERTSAMLTVRA 94
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
F + ++N +A EG A C L + VEW + + L D R + + D +
Sbjct: 11 FIEDVKNQEA-REGATAVLQCEL----NSAAPVEWRKGSETLRDGDRYSLRQDGTKCELQ 65
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + D G Y C G+ T+A + ++
Sbjct: 66 IRGLAMADTGEYSC----VCGQERTSAMLTVR 93
>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From
Human Obscurin
Length = 102
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
FT+ L+N +AVE G A C L V VEW + + L D R + + +
Sbjct: 11 FTEGLRNEEAVE-GATAMLWCELSKVA----PVEWRKGPENLRDGDRYILRQEGTRCELQ 65
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + D G Y+C G+ T+A++ I+
Sbjct: 66 ICGLAMADAGEYLC----VCGQERTSATLTIR 93
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
FT L+N E EG A C L V+ VEW ++ G R+ L I
Sbjct: 11 FTEGLRNEEAVEGATAMLWCELSKVA----PVEWRKGPENLRDGDRYILRQEGTRCELQI 66
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
D+G Y C GQ TS L + + S
Sbjct: 67 CGLAMADAGEYLC----VCGQERTSATLTIRALPS 97
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 509 PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH 568
P Q +D G+ A F+C+ G+P V W ++ K + S + + +
Sbjct: 321 PTQTVDF---GRPAVFTCQY--TGNPIKTVSWMKDGKAIGHSESV----------LRIES 365
Query: 569 VRAEDEGIYICKATNALGEAVTTASMKI 596
V+ ED+G+Y C N A +A +K+
Sbjct: 366 VKKEDKGMYQCFVRNDRESAEASAELKL 393
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 509 PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH 568
P Q +D G+ A F+C+ G+P V W ++ K + S + + +
Sbjct: 315 PTQTVDF---GRPAVFTCQY--TGNPIKTVSWMKDGKAIGHSESV----------LRIES 359
Query: 569 VRAEDEGIYICKATNALGEAVTTASMKI 596
V+ ED+G+Y C N A +A +K+
Sbjct: 360 VKKEDKGMYQCFVRNDRESAEASAELKL 387
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 509 PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH 568
P Q +D G+ A F+C+ G+P V W ++ K + S + + +
Sbjct: 318 PTQTVDF---GRPAVFTCQY--TGNPIKTVSWMKDGKAIGHSESV----------LRIES 362
Query: 569 VRAEDEGIYICKATNALGEAVTTASMKI 596
V+ ED+G+Y C N A +A +K+
Sbjct: 363 VKKEDKGMYQCFVRNDRESAEASAELKL 390
>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin
Binding Protein C
Length = 104
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 661 VPVGDPTMRFEWFVNGVELKM-GSRFHVQHDFGYVTLDITKCVPADSGVYMC 711
V + D +W NG E++M GS++ + TL I++C AD Y C
Sbjct: 38 VELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 89
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
F +KN E +EG A +C L VEW + ++ G R++ + L I
Sbjct: 11 FIEDVKNQEAREGATAVLQCEL----SKAAPVEWRKGSETLRGGDRYSLRQDGTRCELQI 66
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
D+G Y+C GQ TS L V +
Sbjct: 67 HGLSVADTGEYSC----VCGQERTSATLTVRA 94
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 47/203 (23%)
Query: 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
AV G+ CR G P ++ +WF+ K + + + T++ F V HV+ D
Sbjct: 29 AVLAGQFVKLCCR--ATGHPFVQYQWFKMNKEIPNGN--TSELIFNAV-----HVK--DA 77
Query: 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQH-PEGLKK-IQELEQPASPMPQEPERQ 632
G Y+C+ N + S QL+ PE ++ + + + + EP Q
Sbjct: 78 GFYVCRVNNNFTFEFSQWS---------QLDVCDIPESFQRSVDGVSESKLQICVEPTSQ 128
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
+L+ G++ +++ V VG P ++WF N EL + +
Sbjct: 129 -------KLMPGSTLVLQ---------CVAVGSPIPHYQWFKN--ELPLTHETKKLYMVP 170
Query: 693 YVTLDITKCVPADSGVYMCKAIN 715
YV L+ G Y C N
Sbjct: 171 YVDLE-------HQGTYWCHVYN 186
>pdb|3QIB|B Chain B, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 202
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDF 105
+Y T T+P NL C + N++V WF+NG+ G + D+
Sbjct: 105 VYPTKTQPLEHHNL-------LVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDW 157
Query: 106 GYVALDIIDTIPEDSGTYTCRA 127
+ L +++T+P+ YTC+
Sbjct: 158 TFQTLVMLETVPQSGEVYTCQV 179
>pdb|1IAK|A Chain A, Histocompatibility Antigen I-Ak
Length = 199
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D+ + L +
Sbjct: 99 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVTDGVYETSFFVNRDYSFHKLSYLTFI 158
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 159 PSDDDIYDCKV 169
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS--HVRAEDEGI 576
G++ C +PT+ W ++ +P+E+ KH F + +L+ +V DE
Sbjct: 211 GQSVTLVCDADGFPEPTMS--WTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAE 268
Query: 577 YICKATNALGEAVTTASMKIKTK 599
Y+C A N GE + +K+ K
Sbjct: 269 YVCIAENKAGEQDASIHLKVFAK 291
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 45/199 (22%)
Query: 519 GKNAHFSCRLIPVGDPTLK-VEWF--RNEKPLEDSSRITTK-HDFGYVAMDLSHVRAEDE 574
G++ F C++ GD K + WF EK + RI+ +D + + + +D
Sbjct: 17 GESKFFLCQV--AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDA 74
Query: 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634
GIY C V TA +++A + + K Q+L +P PQE
Sbjct: 75 GIYKC---------VVTAEDGTQSEATVNV--------KIFQKLMFKNAPTPQE------ 111
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
EG+ A C VV PT+ ++ V LK RF V + Y
Sbjct: 112 -------------FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NY- 156
Query: 695 TLDITKCVPADSGVYMCKA 713
L I D G Y C+
Sbjct: 157 -LQIRGIKKTDEGTYRCEG 174
>pdb|1D9K|C Chain C, Crystal Structure Of Complex Between D10 Tcr And Pmhc
I-AkCA
pdb|1D9K|G Chain G, Crystal Structure Of Complex Between D10 Tcr And Pmhc
I-AkCA
Length = 183
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D+ + L +
Sbjct: 96 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVTDGVYETSFFVNRDYSFHKLSYLTFI 155
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 156 PSDDDIYDCKV 166
>pdb|1JL4|A Chain A, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
Length = 178
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D+ + L +
Sbjct: 92 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVTDGVYETSFFVNRDYSFHKLSYLTFI 151
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 152 PSDDDIYDCKV 162
>pdb|3PDO|A Chain A, Crystal Structure Of Hla-Dr1 With Clip102-120
pdb|3PGC|A Chain A, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGC|D Chain D, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGD|A Chain A, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|3PGD|D Chain D, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|4AH2|A Chain A, Hla-Dr1 With Covalently Linked Clip106-120 In Canonical
Orientation
Length = 193
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 108 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 166
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Query: 504 PVFTK-PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
PVF K P+ I G A F C+ GDP +V W + K + T + D
Sbjct: 7 PVFIKKPVDQIGV--SGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 563 A-MDLSHVRA-EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
A + + +R DE IY C A N GE A + + E Q P G I
Sbjct: 63 AVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLR------EDQLPPGFPNI 111
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 513 IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
+ VE + A C G+P ++ WF++ P++ S+ + +
Sbjct: 117 LKVVERTRTATMLCAA--SGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEET 174
Query: 573 DEGIYICKATNALG 586
D+G Y C A+N+ G
Sbjct: 175 DQGKYECVASNSAG 188
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 310 DTVSQAPVFTQ-PMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
+T PVF + P+ I V+ A F + GD K +VTW + G + S R T+
Sbjct: 1 ETGESPPVFIKKPVDQIGVS-GGVASFVCQA--TGDPKPRVTWNKKGKKVN-SQRFETIE 56
Query: 369 ---DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
G V P D Y C A N GE + L V
Sbjct: 57 FDESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTV 98
>pdb|2P24|A Chain A, I-AuMBP125-135
Length = 236
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D+ + L +
Sbjct: 129 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI 188
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 189 PSDDDIYDCKV 199
>pdb|2FSE|B Chain B, Crystallographic Structure Of A Rheumatoid Arthritis Mhc
Susceptibility Allele, Hla-Dr1 (Drb10101), Complexed
With The Immunodominant Determinant Of Human Type Ii
Collagen
pdb|2FSE|D Chain D, Crystallographic Structure Of A Rheumatoid Arthritis Mhc
Susceptibility Allele, Hla-Dr1 (Drb10101), Complexed
With The Immunodominant Determinant Of Human Type Ii
Collagen
Length = 187
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDF 105
+Y T T+P NL C + N++V WF+NG+ G + D+
Sbjct: 98 VYPTKTQPLQHHNL-------LVCSVSDFYPGNIEVRWFRNGKEEETGIVSTGLVRNGDW 150
Query: 106 GYVALDIIDTIPEDSGTYTCRA 127
+ L +++T+P+ YTC+
Sbjct: 151 TFQTLVMLETVPQSGEVYTCQV 172
>pdb|1YMM|A Chain A, TcrHLA-Dr2bMBP-Peptide Complex
Length = 191
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 107 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 165
>pdb|4AEN|A Chain A, Hla-Dr1 With Covalently Linked Clip106-120 In Reversed
Orientation
Length = 207
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 122 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 180
>pdb|1AQD|A Chain A, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|D Chain D, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|G Chain G, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|J Chain J, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
Length = 192
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 107 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 165
>pdb|2WBJ|A Chain A, Tcr Complex
pdb|2WBJ|E Chain E, Tcr Complex
Length = 194
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 107 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 165
>pdb|1FNG|B Chain B, Histocompatibility Antigen
pdb|1FNG|D Chain D, Histocompatibility Antigen
Length = 224
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDF 105
+Y T T+P NL C + N++V WF+NG+ G + D+
Sbjct: 127 VYPTKTQPLEHHNL-------LVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDW 179
Query: 106 GYVALDIIDTIPEDSGTYTCRA 127
+ L +++T+P+ YTC+
Sbjct: 180 TFQTLVMLETVPQSGEVYTCQV 201
>pdb|1IEA|B Chain B, Histocompatibility Antigen
pdb|1IEA|D Chain D, Histocompatibility Antigen
pdb|1I3R|B Chain B, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
pdb|1I3R|D Chain D, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
pdb|1I3R|F Chain F, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
pdb|1I3R|H Chain H, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
Length = 228
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDF 105
+Y T T+P NL C + N++V WF+NG+ G + D+
Sbjct: 131 VYPTKTQPLEHHNL-------LVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDW 183
Query: 106 GYVALDIIDTIPEDSGTYTCRA 127
+ L +++T+P+ YTC+
Sbjct: 184 TFQTLVMLETVPQSGEVYTCQV 205
>pdb|1IEB|B Chain B, Histocompatibility Antigen
pdb|1IEB|D Chain D, Histocompatibility Antigen
Length = 227
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDF 105
+Y T T+P NL C + N++V WF+NG+ G + D+
Sbjct: 130 VYPTKTQPLEHHNL-------LVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDW 182
Query: 106 GYVALDIIDTIPEDSGTYTCRA 127
+ L +++T+P+ YTC+
Sbjct: 183 TFQTLVMLETVPQSGEVYTCQV 204
>pdb|4FQX|A Chain A, Crystal Structure Of Hla-Dm Bound To Hla-Dr1
pdb|4GBX|A Chain A, Crystal Structure Of An Immune Complex At Ph 6.5
Length = 191
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 107 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 165
>pdb|3L6F|A Chain A, Structure Of Mhc Class Ii Molecule Hla-Dr1 Complexed With
Phosphopeptide Mart-1
pdb|3S4S|A Chain A, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S4S|D Chain D, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|A Chain A, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|D Chain D, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 182
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 107 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 165
>pdb|1U3H|C Chain C, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
pdb|1U3H|G Chain G, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
Length = 182
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D+ + L +
Sbjct: 96 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI 155
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 156 PSDDDIYDCKV 166
>pdb|1T5X|A Chain A, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr) And The Superantigen Sec3-3b2
Length = 181
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 106 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 164
>pdb|3QIU|B Chain B, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|B Chain B, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 196
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDF 105
+Y T T+P NL C + N++V WF+NG+ G + D+
Sbjct: 99 VYPTKTQPLEHHNL-------LVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDW 151
Query: 106 GYVALDIIDTIPEDSGTYTCRA 127
+ L +++T+P+ YTC+
Sbjct: 152 TFQTLVMLETVPQSGEVYTCQV 173
>pdb|1DLH|A Chain A, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1DLH|D Chain D, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1KG0|A Chain A, Structure Of The Epstein-Barr Virus Gp42 Protein Bound To
The Mhc Class Ii Receptor Hla-Dr1
pdb|1SJE|A Chain A, Hla-Dr1 Complexed With A 16 Residue Hiv Capsid Peptide
Bound In A Hairpin Conformation
pdb|1SJH|A Chain A, Hla-Dr1 Complexed With A 13 Residue Hiv Capsid Peptide
Length = 180
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 105 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 163
>pdb|2IPK|A Chain A, Crystal Structure Of The Mhc Class Ii Molecule Hla-Dr1 In
Complex With The Fluorogenic Peptide, Acpkxvkqntlklat
(X3-
[5-(Dimethylamino)-1,3-Dioxo-1,
3-Dihydro-2h-Isoindol-2-Yl]- L-Alanine) And The
Superantigen, Sec3 Variant 3b2
Length = 183
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 108 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 166
>pdb|4H1L|A Chain A, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
pdb|4H1L|D Chain D, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
Length = 178
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 105 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 163
>pdb|2Z31|C Chain C, Crystal Structure Of Immune Receptor Complex
Length = 181
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D+ + L +
Sbjct: 96 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI 155
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 156 PSDDDIYDCKV 166
>pdb|2PXY|C Chain C, Crystal Structures Of Immune Receptor Complexes
Length = 183
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D+ + L +
Sbjct: 98 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI 157
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 158 PSDDDIYDCKV 168
>pdb|1KLG|A Chain A, Crystal Structure Of Hla-Dr1TPI(23-37, Thr28-->ile Mutant)
Complexed With Staphylococcal Enterotoxin C3 Variant 3b2
(Sec3-3b2)
Length = 177
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 104 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 162
>pdb|1BX2|A Chain A, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed
With A Peptide From Human Myelin Basic Protein
pdb|1BX2|D Chain D, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed
With A Peptide From Human Myelin Basic Protein
pdb|1T5W|A Chain A, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
pdb|1T5W|D Chain D, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
Length = 180
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 106 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 164
>pdb|1FNE|B Chain B, Histocompatibility Antigen
pdb|1FNE|D Chain D, Histocompatibility Antigen
Length = 224
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDF 105
+Y T T+P NL C + N++V WF+NG+ G + D+
Sbjct: 127 VYPTKTQPLEHHNL-------LVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDW 179
Query: 106 GYVALDIIDTIPEDSGTYTCRA 127
+ L +++T+P+ YTC+
Sbjct: 180 TFQTLVMLETVPQSGEVYTCQV 201
>pdb|1HXY|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin H In
Complex With Human Mhc Class Ii
pdb|1H15|A Chain A, X-Ray Crystal Structure Of Hla-Dra10101DRB50101 Complexed
With A Peptide From Epstein Barr Virus Dna Polymerase
pdb|1H15|D Chain D, X-Ray Crystal Structure Of Hla-Dra10101DRB50101 Complexed
With A Peptide From Epstein Barr Virus Dna Polymerase
pdb|1LO5|A Chain A, Crystal Structure Of The D227a Variant Of Staphylococcal
Enterotoxin A In Complex With Human Mhc Class Ii
pdb|1JWM|A Chain A, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1(Ha Peptide 306-318) With The
Superantigen Sec3
pdb|1JWS|A Chain A, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b1
pdb|1JWU|A Chain A, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b2
pdb|1PYW|A Chain A, Human Class Ii Mhc Protein Hla-Dr1 Bound To A Designed
Peptide Related To Influenza Virus Hemagglutinin,
Fvkqna(Maa)al, In Complex With Staphylococcal
Enterotoxin C3 Variant 3b2 (Sec3-3b2)
pdb|2G9H|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin I (Sei) In
Complex With A Human Mhc Class Ii Molecule
pdb|2IAM|A Chain A, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|A Chain A, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|F Chain F, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|K Chain K, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|P Chain P, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2Q6W|A Chain A, The Structure Of Hla-Dra, Drb30101 (Dr52a) With Bound
Platelet Integrin Peptide Associated With Fetal And
Neonatal Alloimmune Thrombocytopenia
pdb|2Q6W|D Chain D, The Structure Of Hla-Dra, Drb30101 (Dr52a) With Bound
Platelet Integrin Peptide Associated With Fetal And
Neonatal Alloimmune Thrombocytopenia
pdb|2XN9|D Chain D, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|3O6F|A Chain A, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3O6F|E Chain E, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3QXA|A Chain A, Hla-Dr1 Bound With Clip Peptide
pdb|3QXA|D Chain D, Hla-Dr1 Bound With Clip Peptide
pdb|3T0E|A Chain A, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
pdb|4E41|A Chain A, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|F Chain F, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 182
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 107 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 165
>pdb|1KLU|A Chain A, Crystal Structure Of Hla-Dr1TPI(23-37) Complexed With
Staphylococcal Enterotoxin C3 Variant 3b2 (Sec3-3b2)
Length = 179
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 104 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 162
>pdb|3QXD|A Chain A, F54c Hla-Dr1 Bound With Clip Peptide
pdb|3QXD|D Chain D, F54c Hla-Dr1 Bound With Clip Peptide
Length = 182
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 107 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 165
>pdb|1KT2|B Chain B, Crystal Structure Of Class Ii Mhc Molecule Iek Bound To
Moth Cytochrome C Peptide
pdb|1KT2|D Chain D, Crystal Structure Of Class Ii Mhc Molecule Iek Bound To
Moth Cytochrome C Peptide
Length = 213
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDF 105
+Y T T+P NL C + N++V WF+NG+ G + D+
Sbjct: 126 VYPTKTQPLEHHNL-------LVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDW 178
Query: 106 GYVALDIIDTIPEDSGTYTCRA 127
+ L +++T+P+ YTC+
Sbjct: 179 TFQTLVMLETVPQSGEVYTCQV 200
>pdb|1A6A|A Chain A, The Structure Of An Intermediate In Class Ii Mhc
Maturation: Clip Bound To Hla-dr3
Length = 176
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 103 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 161
>pdb|1SEB|A Chain A, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1SEB|E Chain E, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|2SEB|A Chain A, X-Ray Crystal Structure Of Hla-Dr4 Complexed With A
Peptide From Human Collagen Ii
pdb|1D5M|A Chain A, X-Ray Crystal Structure Of Hla-Dr4 Complexed With Peptide
And Seb
pdb|1D5X|A Chain A, X-ray Crystal Structure Of Hla-dr4 Complexed With
Dipeptide Mimetic And Seb
pdb|1D5Z|A Chain A, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptidomimetic And Seb
pdb|1D6E|A Chain A, Crystal Structure Of Hla-Dr4 Complex With Peptidomimetic
And Seb
pdb|1FV1|A Chain A, Structural Basis For The Binding Of An Immunodominant
Peptide From Myelin Basic Protein In Different Registers
By Two Hla-Dr2 Alleles
pdb|1FV1|D Chain D, Structural Basis For The Binding Of An Immunodominant
Peptide From Myelin Basic Protein In Different Registers
By Two Hla-Dr2 Alleles
pdb|1FYT|A Chain A, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
pdb|1HQR|A Chain A, Crystal Structure Of A Superantigen Bound To The High-
Affinity, Zinc-Dependent Site On Mhc Class Ii
pdb|1J8H|A Chain A, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr4
pdb|1ZGL|A Chain A, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|D Chain D, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|G Chain G, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|J Chain J, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|3C5J|A Chain A, Crystal Structure Of Hla Dr52c
Length = 181
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 107 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 165
>pdb|1LNU|A Chain A, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|C Chain C, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|E Chain E, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|G Chain G, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|3C5Z|C Chain C, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|G Chain G, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C60|C Chain C, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|G Chain G, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C6L|C Chain C, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|G Chain G, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3RDT|C Chain C, Crystal Structure Of 809.B5 Tcr Complexed With Mhc Class
Ii I-Ab3K Peptide
Length = 182
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D+ + L +
Sbjct: 96 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI 155
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 156 PSDDDIYDCKV 166
>pdb|1K2D|A Chain A, Crystal Structure Of The Autoimmune Mhc Class Ii I-Au
Complexed With Myelin Basic Protein 1-11 At 2.2a
Length = 189
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D+ + L +
Sbjct: 103 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI 162
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 163 PSDDDIYDCKV 173
>pdb|1MUJ|A Chain A, Crystal Structure Of Murine Class Ii Mhc I-Ab In Complex
With A Human Clip Peptide
Length = 190
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D+ + L +
Sbjct: 99 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI 158
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 159 PSDDDIYDCKV 169
>pdb|2OJE|A Chain A, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
pdb|2OJE|E Chain E, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
Length = 180
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 106 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 164
>pdb|2ICW|A Chain A, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|D Chain D, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
Length = 179
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 105 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 163
>pdb|1KTD|B Chain B, Crystal Structure Of Class Ii Mhc Molecule Iek Bound To
Pigeon Cytochrome C Peptide
pdb|1KTD|D Chain D, Crystal Structure Of Class Ii Mhc Molecule Iek Bound To
Pigeon Cytochrome C Peptide
Length = 215
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDF 105
+Y T T+P NL C + N++V WF+NG+ G + D+
Sbjct: 128 VYPTKTQPLEHHNL-------LVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDW 180
Query: 106 GYVALDIIDTIPEDSGTYTCRA 127
+ L +++T+P+ YTC+
Sbjct: 181 TFQTLVMLETVPQSGEVYTCQV 202
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWF--RNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
G++ F+C I G+P ++W+ + EK + + R+ + + + + + ED GI
Sbjct: 15 GESKFFTCTAI--GEPE-SIDWYNPQGEKII-STQRVVVQKEGVRSRLTIYNANIEDAGI 70
Query: 577 YICKATNALGE 587
Y C+AT+A G+
Sbjct: 71 YRCQATDAKGQ 81
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVPIKSGSRFTETNNFGFVALDI 245
T SL E+ G+ F C I ++ ++W++ I S R L I
Sbjct: 4 TISLSKVELSVGESKFFTCTAIGEPES---IDWYNPQGEKIISTQRVVVQKEGVRSRLTI 60
Query: 246 MQCLPEDSGVYTCRAVNALGQ 266
ED+G+Y C+A +A GQ
Sbjct: 61 YNANIEDAGIYRCQATDAKGQ 81
>pdb|1R5I|A Chain A, Crystal Structure Of The Mam-Mhc Complex
pdb|1R5I|E Chain E, Crystal Structure Of The Mam-Mhc Complex
Length = 181
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C ++ T + V W +NG+PVT G F P D + + +P Y CR
Sbjct: 107 CFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 165
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
GD ++WL+ G + +T+ + G L K D+GTYTC A + GE S
Sbjct: 34 GDPLPVISWLKEGFTFPGRDPRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWS 91
Query: 403 STLFV 407
+ L V
Sbjct: 92 AVLDV 96
>pdb|1R5V|B Chain B, Evidence That Structural Rearrangements AndOR FLEXIBILITY
DURING TCR Binding Can Contribute To T-Cell Activation
pdb|1R5V|D Chain D, Evidence That Structural Rearrangements AndOR FLEXIBILITY
DURING TCR Binding Can Contribute To T-Cell Activation
pdb|1R5W|B Chain B, Evidence That Structural Rearrangements And/or Flexibility
During Tcr Binding Can Contribute To T-cell Activation
pdb|1R5W|D Chain D, Evidence That Structural Rearrangements And/or Flexibility
During Tcr Binding Can Contribute To T-cell Activation
Length = 185
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDF 105
+Y T T+P NL C + N++V WF+NG+ G + D+
Sbjct: 98 VYPTKTQPLEHHNL-------LVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDW 150
Query: 106 GYVALDIIDTIPEDSGTYTCRA 127
+ L +++T+P+ YTC+
Sbjct: 151 TFQTLVMLETVPQSGEVYTCQV 172
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWF--RNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
G++ F+C I G+P ++W+ + EK + + R+ + + + + + ED GI
Sbjct: 17 GESKFFTCTAI--GEPE-SIDWYNPQGEKII-STQRVVVQKEGVRSRLTIYNANIEDAGI 72
Query: 577 YICKATNALGEAV-TTASMKIKTKAGLQLETQHPEGLKKIQELE----QPASPMP 626
Y C+AT+A G+ T ++I K + E P+ K+ ++ E +SP P
Sbjct: 73 YRCQATDAKGQTQEATVVLEIYQKLTFR-EVVSPQEFKQGEDAEVVCRVSSSPAP 126
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVPIKSGSRFTETNNFGFVALDI 245
T SL E+ G+ F C I ++ ++W++ I S R L I
Sbjct: 6 TISLSKVELSVGESKFFTCTAIGEPES---IDWYNPQGEKIISTQRVVVQKEGVRSRLTI 62
Query: 246 MQCLPEDSGVYTCRAVNALGQ 266
ED+G+Y C+A +A GQ
Sbjct: 63 YNANIEDAGIYRCQATDAKGQ 83
>pdb|3BIK|B Chain B, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIK|C Chain C, Crystal Structure Of The Pd-1PD-L1 Complex
Length = 134
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 24/86 (27%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEW--------------FRN--EKPLEDSS----RITT 555
V EG NA F+C L + L + W F N +P++D+ ++
Sbjct: 21 VSEGANATFTCSLSNWSE-DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPN 79
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKA 581
+HDF M++ R D GIY+C A
Sbjct: 80 RHDFH---MNILDTRRNDSGIYLCGA 102
>pdb|1NPU|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
Pd-1
pdb|3BP5|A Chain A, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
Length = 117
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 24/86 (27%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEW--------------FRN--EKPLEDSS----RITT 555
V EG NA F+C L + L + W F N +P++D+ ++
Sbjct: 11 VSEGANATFTCSLSNWSE-DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPN 69
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKA 581
+HDF M++ R D GIY+C A
Sbjct: 70 RHDFH---MNILDTRRNDSGIYLCGA 92
>pdb|3RNQ|A Chain A, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 117
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 24/86 (27%)
Query: 516 VEEGKNAHFSC--------------RLIPVGDPTLKVEWFRN--EKPLEDSS----RITT 555
V EG NA F+C RL P + T K F N +P++D+ ++
Sbjct: 11 VSEGANATFTCSLSNWSEDLMLNWNRLSP-SNQTEKQAAFSNGLSQPVQDARFQIIQLPN 69
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKA 581
+HDF M++ R D GIY+C A
Sbjct: 70 RHDFH---MNILDTRRNDSGIYLCGA 92
>pdb|2CR6|A Chain A, Solution Structure Of The Ig Domain (2998-3100) Of Human
Obscurin
Length = 115
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS-RFTETNNFGFVALDIMQC 248
L++ +++EG A F CR+ P N V WF + P+ + + G+ L + Q
Sbjct: 20 LEDVDVQEGSSATFRCRISPA--NYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQL 77
Query: 249 LPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
+DSG A G S L V K S+
Sbjct: 78 ALKDSGTIYFEA----GDQRASAALRVTEKPSV 106
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 510 LQNIDAVEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLE-DSSRITTKHDFGYVAMDLS 567
L+++D V+EG +A F CR+ P +P V WF ++ PL + GY + L
Sbjct: 20 LEDVD-VQEGSSATFRCRISPANYEP---VHWFLDKTPLHANELNEIDAQPGGYHVLTLR 75
Query: 568 HVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ +D G +A G+ +A++++ K
Sbjct: 76 QLALKDSGTIYFEA----GDQRASAALRVTEK 103
>pdb|3BP6|A Chain A, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
pdb|3RNK|A Chain A, Crystal Structure Of The Complex Between Mouse Pd-1 Mutant
And Pd-L2 Igv Domain
pdb|3SBW|A Chain A, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
pdb|3SBW|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 117
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 24/86 (27%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEW--------------FRN--EKPLEDSS----RITT 555
V EG NA F+C L + L + W F N +P++D+ ++
Sbjct: 11 VSEGANATFTCSLSNWSE-DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPN 69
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKA 581
+HDF M++ R D GIY+C A
Sbjct: 70 RHDFH---MNILDTRRNDSGIYLCGA 92
>pdb|2WO3|B Chain B, Crystal Structure Of The Epha4-Ephrina2 Complex
Length = 157
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 27 WQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIE-NLRERGHAHFECKLEPVTDSNLKV- 84
+ ++ P + A++ ++++ Y V + R+RG +EC LK
Sbjct: 39 YLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFS 98
Query: 85 EWFKNGRPVTIGHRFRPIHDFGYVA 109
E F+ P ++G FRP H++ Y++
Sbjct: 99 EKFQLFTPFSLGFEFRPGHEYYYIS 123
>pdb|3DNK|A Chain A, Enzyme Deglycosylated Human Igg1 Fc Fragment
pdb|3DNK|B Chain B, Enzyme Deglycosylated Human Igg1 Fc Fragment
Length = 212
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q+D Y + + +
Sbjct: 16 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYDSTYRVVSVLTVL 74
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 75 HQDWLNGKEYKCKVSNKALPA 95
>pdb|2P24|B Chain B, I-AuMBP125-135
Length = 259
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 163 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVY 222
Query: 124 TC 125
TC
Sbjct: 223 TC 224
>pdb|2ENY|A Chain A, Solution Structure Of The Ig-Like Domain (2735-2825) Of
Human Obscurin
Length = 104
Score = 32.7 bits (73), Expect = 0.87, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 645 TSEIMEGQSAHYDCRVV--PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCV 702
T E++EG+S ++C + DP M W V G + SRF L + +
Sbjct: 17 TMEVLEGESCSFECVLSHESASDPAM---WTVGGKTVGSSSRFQATRQGRKYILVVREAA 73
Query: 703 PADSG 707
P+D+G
Sbjct: 74 PSDAG 78
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 187 TTSLKNCEIKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALD 244
T LK E+ EG+ FEC L SD M W + S SRF T L
Sbjct: 12 TKRLKTMEVLEGESCSFECVLSHESASDPAM---WTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 245 IMQCLPEDSG--VYTCRAVNA 263
+ + P D+G V++ R + +
Sbjct: 69 VREAAPSDAGEVVFSVRGLTS 89
>pdb|2IAD|B Chain B, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 205
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 127 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVY 186
Query: 124 TC 125
TC
Sbjct: 187 TC 188
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 509 PLQNIDAVEEGKNAHFSCRL-------IPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
PL V EG A +CR+ + +P + +F ++K L D+ + +
Sbjct: 11 PLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHE 70
Query: 562 VAMDLSHVRAEDEGIYIC 579
+++ +S V DEG Y C
Sbjct: 71 LSISVSDVSLSDEGQYTC 88
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577
EG A C L VEW + + L D R + + D + + + D G Y
Sbjct: 22 EGATATLRCEL----SKAAPVEWRKGRESLRDGDRHSLRQDGAVCELQICGLAVADAGEY 77
Query: 578 ICKATNALGEAVTTASMKIK 597
C GE T+A++ +K
Sbjct: 78 SC----VCGEERTSATLTVK 93
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
F L++ E EG A C L VEW ++ G R + + L I
Sbjct: 11 FIGRLRHQESIEGATATLRCEL----SKAAPVEWRKGRESLRDGDRHSLRQDGAVCELQI 66
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
D+G Y+C G+ TS L V + S
Sbjct: 67 CGLAVADAGEYSC----VCGEERTSATLTVKALPS 97
>pdb|1IAO|B Chain B, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
Length = 222
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 138 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVY 197
Query: 124 TC 125
TC
Sbjct: 198 TC 199
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin Binding
Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLD 697
F ++L ++ +G + VV + DP + +W+ NG E++ +++ +H L
Sbjct: 10 FAKILDPAYQVDKGGRVRF---VVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF 66
Query: 698 ITKCVPADSGVYMCKA 713
I C D Y A
Sbjct: 67 INNCQMTDDSEYYVTA 82
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 505 VFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH 557
F K L V++G F ++ + DP L+V+W++N + + S++ +H
Sbjct: 9 AFAKILDPAYQVDKGGRVRF---VVELADPKLEVKWYKNGQEIRPSTKYIFEH 58
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 524 FSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL--SHVRAEDEGIYICKA 581
+C +PT+ W ++ +P+E K+ F Y +L V DE YIC A
Sbjct: 33 LACDADGFPEPTMT--WTKDGEPIEQEDN-EEKYSFNYDGSELIIKKVDKSDEAEYICIA 89
Query: 582 TNALGEAVTTASMKIKTK 599
N GE T +K+ K
Sbjct: 90 ENKAGEQDATIHLKVFAK 107
>pdb|1F3J|B Chain B, Histocompatibility Antigen I-Ag7
pdb|1F3J|E Chain E, Histocompatibility Antigen I-Ag7
Length = 187
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 108 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVY 167
Query: 124 TC 125
TC
Sbjct: 168 TC 169
>pdb|3CUP|B Chain B, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
Length = 222
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 138 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVY 197
Query: 124 TC 125
TC
Sbjct: 198 TC 199
>pdb|3MBE|B Chain B, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|F Chain F, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 201
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 117 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVY 176
Query: 124 TC 125
TC
Sbjct: 177 TC 178
>pdb|1LNU|B Chain B, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|D Chain D, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|F Chain F, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|H Chain H, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|3C5Z|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C60|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C6L|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 217
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 139 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVY 198
Query: 124 TC 125
TC
Sbjct: 199 TC 200
>pdb|3V8C|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) DOUBLE MUTANT (H310 AND H435 IN K)
pdb|3V8C|B Chain B, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) DOUBLE MUTANT (H310 AND H435 IN K)
Length = 212
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 16 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 74
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 75 KQDWLNGKEYKCKVSNKALPA 95
>pdb|3RDT|D Chain D, Crystal Structure Of 809.B5 Tcr Complexed With Mhc Class
Ii I-Ab3K Peptide
Length = 217
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 139 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVY 198
Query: 124 TC 125
TC
Sbjct: 199 TC 200
>pdb|1ES0|B Chain B, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
Length = 221
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 137 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVY 196
Query: 124 TC 125
TC
Sbjct: 197 TC 198
>pdb|1IAK|B Chain B, Histocompatibility Antigen I-Ak
pdb|1JL4|B Chain B, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
Length = 185
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 107 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVY 166
Query: 124 TC 125
TC
Sbjct: 167 TC 168
>pdb|2PXY|D Chain D, Crystal Structures Of Immune Receptor Complexes
Length = 189
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 110 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVY 169
Query: 124 TC 125
TC
Sbjct: 170 TC 171
>pdb|2DKU|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 103
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
S A FT+ + ++ V E A F + VTW + + ++AS + +
Sbjct: 6 SGANCFTEELTNLQVEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQEGLT 62
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ L DS TYTC ++G+A + + L V+ + S
Sbjct: 63 LRLTISALEKADSDTYTC----DIGQAQSRAQLLVQGRRS 98
>pdb|1D9K|D Chain D, Crystal Structure Of Complex Between D10 Tcr And Pmhc
I-AkCA
pdb|1D9K|H Chain H, Crystal Structure Of Complex Between D10 Tcr And Pmhc
I-AkCA
Length = 188
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 110 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVY 169
Query: 124 TC 125
TC
Sbjct: 170 TC 171
>pdb|1MUJ|B Chain B, Crystal Structure Of Murine Class Ii Mhc I-Ab In Complex
With A Human Clip Peptide
Length = 197
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 113 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVY 172
Query: 124 TC 125
TC
Sbjct: 173 TC 174
>pdb|1K2D|B Chain B, Crystal Structure Of The Autoimmune Mhc Class Ii I-Au
Complexed With Myelin Basic Protein 1-11 At 2.2a
pdb|1U3H|D Chain D, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
pdb|1U3H|H Chain H, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
pdb|2Z31|D Chain D, Crystal Structure Of Immune Receptor Complex
Length = 189
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+NG+ T+G + D+ + L +++ P Y
Sbjct: 111 HNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVY 170
Query: 124 TC 125
TC
Sbjct: 171 TC 172
>pdb|4DZ8|B Chain B, Human Igg1 Fc Fragment Heterodimer
Length = 207
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 13 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 71
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 72 HQDWLNGKEYKCKVSNKALPA 92
>pdb|1IAO|A Chain A, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
pdb|2IAD|A Chain A, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 194
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D + L +
Sbjct: 99 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVTDGVYETSFLVNRDHSFHKLSYLTFI 158
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 159 PSDDDIYDCKV 169
>pdb|3PL6|B Chain B, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 202
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + S +KV WF+N + T G P+ D+ + L +++ P+ Y
Sbjct: 114 HNLLICSVTDFYPSQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVY 173
Query: 124 TC 125
TC
Sbjct: 174 TC 175
>pdb|1L6X|A Chain A, Fc Fragment Of Rituximab Bound To A Minimized Version Of
The B-Domain From Protein A Called Z34c
pdb|2IWG|A Chain A, Complex Between The Pryspry Domain Of Trim21 And Igg Fc
pdb|2IWG|D Chain D, Complex Between The Pryspry Domain Of Trim21 And Igg Fc
Length = 207
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 73
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 74 HQDWLNGKEYKCKVSNKALPA 94
>pdb|1F3J|A Chain A, Histocompatibility Antigen I-Ag7
pdb|1F3J|D Chain D, Histocompatibility Antigen I-Ag7
Length = 182
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D + L +
Sbjct: 96 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVTDGVYETSFLVNRDHSFHKLSYLTFI 155
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 156 PSDDDIYDCKV 166
>pdb|1ES0|A Chain A, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
pdb|3CUP|A Chain A, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
pdb|3MBE|A Chain A, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|E Chain E, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 190
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCV 702
S ++ GQ C V + P + W N + G + F V D + L +
Sbjct: 99 SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVTDGVYETSFLVNRDHSFHKLSYLTFI 158
Query: 703 PADSGVYMCKA 713
P+D +Y CK
Sbjct: 159 PSDDDIYDCKV 169
>pdb|2WAH|A Chain A, Crystal Structure Of An Igg1 Fc Glycoform (man9glcnac2)
pdb|2WAH|B Chain B, Crystal Structure Of An Igg1 Fc Glycoform (man9glcnac2)
Length = 209
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 73
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 74 HQDWLNGKEYKCKVSNKALPA 94
>pdb|4D8P|B Chain B, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
pdb|4D8P|D Chain D, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
Length = 250
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+N + T G P+ D+ + L +++ P+ Y
Sbjct: 145 HNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVY 204
Query: 124 TC 125
TC
Sbjct: 205 TC 206
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
F L+N E EG A C L VEW + ++ G R + + L I
Sbjct: 11 FIEGLRNEEATEGDTATLWCEL----SKAAPVEWRKGHETLRDGDRHSLRQDGSRCELQI 66
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
D+G Y+C GQ TS L V +
Sbjct: 67 RGLAVVDAGEYSC----VCGQERTSATLTVRA 94
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
F + L+N +A E G A C L VEW + + L D R + + D +
Sbjct: 11 FIEGLRNEEATE-GDTATLWCEL----SKAAPVEWRKGHETLRDGDRHSLRQDGSRCELQ 65
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + D G Y C G+ T+A++ ++
Sbjct: 66 IRGLAVVDAGEYSC----VCGQERTSATLTVR 93
>pdb|4DZ8|A Chain A, Human Igg1 Fc Fragment Heterodimer
Length = 211
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 16 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 74
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 75 HQDWLNGKEYKCKVSNKALPA 95
>pdb|1S9V|B Chain B, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
pdb|1S9V|E Chain E, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
Length = 198
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+N + T G P+ D+ + L +++ P+ Y
Sbjct: 112 HNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVY 171
Query: 124 TC 125
TC
Sbjct: 172 TC 173
>pdb|3D6G|A Chain A, Fc Fragment Of Igg1 (herceptin) With Protein-a Mimetic
Peptide Dendrimer Ligand.
pdb|3D6G|B Chain B, Fc Fragment Of Igg1 (herceptin) With Protein-a Mimetic
Peptide Dendrimer Ligand
Length = 210
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 16 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 74
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 75 HQDWLNGKEYKCKVSNKALPA 95
>pdb|3AGV|A Chain A, Crystal Structure Of A Human Igg-Aptamer Complex
pdb|3AGV|B Chain B, Crystal Structure Of A Human Igg-Aptamer Complex
Length = 211
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 73
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 74 HQDWLNGKEYKCKVSNKALPA 94
>pdb|3V7M|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) IN THE PRESENCE OF ZN2+
Length = 209
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 16 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 74
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 75 HQDWLNGKEYKCKVSNKALPA 95
>pdb|4B7I|A Chain A, Crystal Structure Of Human Igg Fc Bearing Hybrid-Type
Glycans
pdb|4B7I|B Chain B, Crystal Structure Of Human Igg Fc Bearing Hybrid-Type
Glycans
Length = 218
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 73
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 74 HQDWLNGKEYKCKVSNKALPA 94
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRA 392
++W ++GV + +NR + ++ L K P DSG Y C A
Sbjct: 31 ISWTKDGVHLGPNNRTVLIGEY----LQIKGATPRDSGLYACTA 70
>pdb|3DO3|A Chain A, Human 1gg1 Fc Fragment, 2.5 Angstrom Structure
pdb|3DO3|B Chain B, Human 1gg1 Fc Fragment, 2.5 Angstrom Structure
Length = 212
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 16 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 74
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 75 HQDWLNGKEYKCKVSNKALPA 95
>pdb|1OQO|A Chain A, Complex Between G0 Version Of An Fc Bound To A Minimized
Version Of Protein A Called Mini-Z
pdb|1OQO|B Chain B, Complex Between G0 Version Of An Fc Bound To A Minimized
Version Of Protein A Called Mini-Z
pdb|1OQX|A Chain A, G-2 Glycovariant Of Human Igg Fc Bound To Minimized
Version Of Protein A Called Z34c
pdb|1OQX|B Chain B, G-2 Glycovariant Of Human Igg Fc Bound To Minimized
Version Of Protein A Called Z34c
pdb|3V95|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc And
Igg1 T125(Yb20) IN THE PRESENCE OF EDTA
pdb|3V95|B Chain B, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc And
Igg1 T125(Yb20) IN THE PRESENCE OF EDTA
Length = 212
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 16 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 74
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 75 HQDWLNGKEYKCKVSNKALPA 95
>pdb|2GJ7|A Chain A, Crystal Structure Of A Ge-GiFC COMPLEX
pdb|2GJ7|B Chain B, Crystal Structure Of A Ge-GiFC COMPLEX
Length = 227
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 31 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 89
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 90 HQDWLNGKEYKCKVSNKALPA 110
>pdb|4GG6|B Chain B, Protein Complex
pdb|4GG6|D Chain D, Protein Complex
Length = 215
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+N + T G P+ D+ + L +++ P+ Y
Sbjct: 127 HNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVY 186
Query: 124 TC 125
TC
Sbjct: 187 TC 188
>pdb|3S7G|A Chain A, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|B Chain B, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|C Chain C, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|D Chain D, Aglycosylated Human Igg1 Fc Fragment
Length = 227
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 31 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 89
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 90 HQDWLNGKEYKCKVSNKALPA 110
>pdb|1JK8|B Chain B, Crystal Structure Of A Human Insulin Peptide-Hla-Dq8
Complex
Length = 190
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+N + T G P+ D+ + L +++ P+ Y
Sbjct: 110 HNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVY 169
Query: 124 TC 125
TC
Sbjct: 170 TC 171
>pdb|3C2S|A Chain A, Structural Characterization Of A Human Fc Fragment
Engineered For Lack Of Effector Functions
Length = 225
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 29 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 87
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 88 HQDWLNGKEYKCKVSNKALPA 108
>pdb|4H1L|B Chain B, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
pdb|4H1L|E Chain E, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
Length = 187
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRP-----VTIGHRFRPIH--DFGYVALDIIDTIPED 119
H C + +++V WF+NG+ V+ G IH D+ + L +++T+P
Sbjct: 109 HNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTG----LIHNGDWTFQTLVMLETVPRS 164
Query: 120 SGTYTCRA 127
YTC+
Sbjct: 165 GEVYTCQV 172
>pdb|2NNA|B Chain B, Structure Of The Mhc Class Ii Molecule Hla-Dq8 Bound With
A Deamidated Gluten Peptide
Length = 207
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + + +KV WF+N + T G P+ D+ + L +++ P+ Y
Sbjct: 127 HNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVY 186
Query: 124 TC 125
TC
Sbjct: 187 TC 188
>pdb|2M2D|A Chain A, Human Programmed Cell Death 1 Receptor
Length = 118
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 58 SIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIP 117
S N ++ A E + +P DS +V NGR DF + ++
Sbjct: 39 SPSNQTDKLAAFPEDRSQPGQDSRFRVTQLPNGR------------DFH---MSVVRARR 83
Query: 118 EDSGTYTCRAVNLVGFAEVQATLQ 141
DSGTY C A++L A+++ +L+
Sbjct: 84 NDSGTYLCGAISLAPKAQIKESLR 107
>pdb|3SGJ|A Chain A, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGJ|B Chain B, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|A Chain A, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|B Chain B, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 225
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 29 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 87
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 88 HQDWLNGKEYKCKVSNKALPA 108
>pdb|2DTS|A Chain A, Crystal Structure Of The Defucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|2DTS|B Chain B, Crystal Structure Of The Defucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AVE|A Chain A, Crystal Structure Of The Fucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AVE|B Chain B, Crystal Structure Of The Fucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AY4|A Chain A, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
pdb|3AY4|B Chain B, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 223
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 27 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 85
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 86 HQDWLNGKEYKCKVSNKALPA 106
>pdb|1T83|A Chain A, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T83|B Chain B, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|A Chain A, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
pdb|1T89|B Chain B, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 224
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 28 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 86
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 87 HQDWLNGKEYKCKVSNKALPA 107
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 98 RFRPIHDFGYVALDIIDTIPEDSGTYTCRA--VNLVGFAEVQATLQCRGSAG-ILTSTQN 154
R H + V ++ +DT+ + G A NLV + + L+ + LT T
Sbjct: 102 RIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITIAINNTLTPTTL 161
Query: 155 ETGLEQIQYLEDKSKYQRGEYIEET 179
G IQYL D SKY +G +++ T
Sbjct: 162 PPG--TIQYLTDTSKYPKGYFVQNT 184
>pdb|2QL1|A Chain A, Structural Characterization Of A Mutated, Adcc-Enhanced
Human Fc Fragment
Length = 225
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 29 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 87
Query: 703 PAD---SGVYMCKAINRA 717
D Y CK N+A
Sbjct: 88 HQDWLNGKEYKCKVSNKA 105
>pdb|3U0T|D Chain D, Fab-Antibody Complex
pdb|3U0T|B Chain B, Fab-Antibody Complex
Length = 217
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 547 LEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL------GEAVTTASMKIK 597
L+D +T V M+LS +R+ED +Y C + +L G VT +S K
Sbjct: 64 LQDRVTMTRDTSTSTVYMELSSLRSEDTAVYYCASLYSLPVYWGQGTTVTVSSASTK 120
>pdb|3C5J|B Chain B, Crystal Structure Of Hla Dr52c
Length = 190
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRP-----VTIGHRFRPIH--DFGYVALDIIDTIPED 119
H C + +++V WF+NG+ V+ G IH D+ + L +++T+P
Sbjct: 112 HNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTG----LIHNGDWTFQTLVMLETVPRS 167
Query: 120 SGTYTCRA 127
YTC+
Sbjct: 168 GEVYTCQV 175
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 344 DSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401
D + WLR+GV + SNR + + + + P DSG Y C + G T
Sbjct: 29 DDVQSINWLRDGVQLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTT 82
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 665 DPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718
D W +GV+L +R + + +++ VPADSG+Y C + +G
Sbjct: 29 DDVQSINWLRDGVQLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSG 78
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG 254
+ G CRL D+ + W + V + +R T +++ +P DSG
Sbjct: 15 VHPGDLLQLRCRL---RDDVQSINWLRDGVQLAESNRTRITGE----EVEVQDSVPADSG 67
Query: 255 VYTCRAVNALGQAVT 269
+Y C + G T
Sbjct: 68 LYACVTSSPSGSDTT 82
>pdb|4AH2|B Chain B, Hla-Dr1 With Covalently Linked Clip106-120 In Canonical
Orientation
Length = 229
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 143 HNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 202
Query: 124 TCRA 127
TC+
Sbjct: 203 TCQV 206
>pdb|3DJ9|A Chain A, Crytal Structure Of An Isolated, Unglycosylated Antibody
Ch2 Domain
Length = 107
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 16 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 74
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 75 HQDWLNGKEYKCKVSNKALPA 95
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 320 QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKY 379
+P+ D VA + L G V WL++ I+ S + + + L +
Sbjct: 13 KPLEDQWVAPGEDVELRCELSRAGTP---VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRG 69
Query: 380 TYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+D+G YTC E+ + ++++L VE KAS
Sbjct: 70 ASLKDAGEYTC----EVEASKSTASLHVEEKAS 98
>pdb|1A6A|B Chain B, The Structure Of An Intermediate In Class Ii Mhc
Maturation: Clip Bound To Hla-dr3
Length = 187
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRP-----VTIGHRFRPIH 103
+Y + T+P NL C + +++V WF+NG+ V+ G IH
Sbjct: 97 VYPSKTQPLQHHNL-------LVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTG----LIH 145
Query: 104 --DFGYVALDIIDTIPEDSGTYTCRA 127
D+ + L +++T+P YTC+
Sbjct: 146 NGDWTFQTLVMLETVPRSGEVYTCQV 171
>pdb|1FRT|C Chain C, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
Length = 205
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GV++ K R Q++ Y + + +
Sbjct: 13 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR-EQQYNSTYRVVSVLTVL 71
Query: 703 P---ADSGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 72 HQNWLDGKEYKCKVSNKALPA 92
>pdb|1FCC|A Chain A, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
pdb|1FCC|B Chain B, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
Length = 206
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GV++ K R Q++ Y + + +
Sbjct: 14 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR-EQQYNSTYRVVSVLTVL 72
Query: 703 P---ADSGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 73 HQNWLDGKEYKCKVSNKALPA 93
>pdb|4ACP|A Chain A, Deactivation Of Human Igg1 Fc By Endoglycosidase Treatment
pdb|4ACP|B Chain B, Deactivation Of Human Igg1 Fc By Endoglycosidase Treatment
Length = 240
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GVE+ K R Q++ Y + + +
Sbjct: 36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVL 94
Query: 703 PAD---SGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 95 HQDWLNGKEYKCKVSNKALPA 115
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 89 NGRPVTIGHRFRPIHDFGY--VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSA 146
N + ++IG R+ + G +L I D EDSGTY C+A + + +L RG
Sbjct: 45 NEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYSLPLGDYNYSLLFRGEK 104
Query: 147 GILTS 151
G T+
Sbjct: 105 GAGTA 109
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 198 GQRAHFECRLIPVSDNTMKVEWFH------NNVPIKSGSRFTETNNFGF--VALDIMQCL 249
G+ C L S W+ N I G R+ ET N G +L I
Sbjct: 15 GESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLR 74
Query: 250 PEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
EDSG Y C+A +L + +LL +K T
Sbjct: 75 VEDSGTYKCQAFYSLPLGDYNYSLLFRGEKGAGT 108
>pdb|3RY6|A Chain A, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
pdb|3RY6|B Chain B, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 214
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GV++ K R Q++ Y + + +
Sbjct: 21 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR-EQQYNSTYRVVSVLTVL 79
Query: 703 P---ADSGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 80 HQNWLDGKEYKCKVSNKALPA 100
>pdb|4FQX|B Chain B, Crystal Structure Of Hla-Dm Bound To Hla-Dr1
pdb|4GBX|B Chain B, Crystal Structure Of An Immune Complex At Ph 6.5
Length = 208
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 118 HNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 177
Query: 124 TCRA 127
TC+
Sbjct: 178 TCQV 181
>pdb|1AQD|B Chain B, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|E Chain E, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|H Chain H, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|K Chain K, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
Length = 198
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 112 HNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 171
Query: 124 TCRA 127
TC+
Sbjct: 172 TCQV 175
>pdb|3PDO|B Chain B, Crystal Structure Of Hla-Dr1 With Clip102-120
pdb|3PGC|B Chain B, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGC|E Chain E, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGD|B Chain B, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|3PGD|E Chain E, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|4AEN|B Chain B, Hla-Dr1 With Covalently Linked Clip106-120 In Reversed
Orientation
Length = 199
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 113 HNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 172
Query: 124 TCRA 127
TC+
Sbjct: 173 TCQV 176
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR 231
RG ++ Q P+ + EG + + C + T + WF + + S S
Sbjct: 13 RGSHMYAPKLQGPVAVYTW------EGNQVNITCEVFAYPSAT--ISWFRDGQLLPS-SN 63
Query: 232 FTETNNFGFVALDIMQCLPE---DSGVYTCRAVNALGQ 266
++ + + ++ P+ D G Y C AVN +GQ
Sbjct: 64 YSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 101
>pdb|1UVQ|B Chain B, Crystal Structure Of Hla-Dq0602 In Complex With A
Hypocretin Peptide
Length = 198
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +KV WF+N + T G P+ D+ + L +++ P+ Y
Sbjct: 110 HNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVY 169
Query: 124 TC 125
TC
Sbjct: 170 TC 171
>pdb|2YWY|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|C Chain C, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|D Chain D, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 56 PKSIENLRERGHA-HFECKLEPVTDSNLKVEWFK------NGRPVTIGHRFRPIHDFGY- 107
P+S+ +E G + C L+ D + +W++ N + ++IG R+ + G
Sbjct: 7 PRSVT--KETGESLTINCALKNAADDLERTDWYRTTLGSTNEQKISIGGRYVETVNKGSK 64
Query: 108 -VALDIIDTIPEDSGTYTCRA 127
+L I D EDSGTY C A
Sbjct: 65 SFSLRIRDLRVEDSGTYKCGA 85
>pdb|3L6F|B Chain B, Structure Of Mhc Class Ii Molecule Hla-Dr1 Complexed With
Phosphopeptide Mart-1
pdb|3S4S|B Chain B, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S4S|E Chain E, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|B Chain B, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|E Chain E, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 193
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 113 HNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 172
Query: 124 TCRA 127
TC+
Sbjct: 173 TCQV 176
>pdb|1DLH|B Chain B, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1DLH|E Chain E, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1KG0|B Chain B, Structure Of The Epstein-Barr Virus Gp42 Protein Bound To
The Mhc Class Ii Receptor Hla-Dr1
Length = 188
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 110 HNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 169
Query: 124 TCRA 127
TC+
Sbjct: 170 TCQV 173
>pdb|1SEB|B Chain B, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1SEB|F Chain F, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1FYT|B Chain B, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
Length = 192
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 112 HNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 171
Query: 124 TCRA 127
TC+
Sbjct: 172 TCQV 175
>pdb|1HXY|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin H In
Complex With Human Mhc Class Ii
pdb|1KLG|B Chain B, Crystal Structure Of Hla-Dr1TPI(23-37, Thr28-->ile Mutant)
Complexed With Staphylococcal Enterotoxin C3 Variant 3b2
(Sec3-3b2)
pdb|1KLU|B Chain B, Crystal Structure Of Hla-Dr1TPI(23-37) Complexed With
Staphylococcal Enterotoxin C3 Variant 3b2 (Sec3-3b2)
pdb|1LO5|B Chain B, Crystal Structure Of The D227a Variant Of Staphylococcal
Enterotoxin A In Complex With Human Mhc Class Ii
pdb|1JWM|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1(Ha Peptide 306-318) With The
Superantigen Sec3
pdb|1JWS|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b1
pdb|1JWU|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b2
pdb|1PYW|B Chain B, Human Class Ii Mhc Protein Hla-Dr1 Bound To A Designed
Peptide Related To Influenza Virus Hemagglutinin,
Fvkqna(Maa)al, In Complex With Staphylococcal
Enterotoxin C3 Variant 3b2 (Sec3-3b2)
pdb|1R5I|B Chain B, Crystal Structure Of The Mam-Mhc Complex
pdb|1R5I|F Chain F, Crystal Structure Of The Mam-Mhc Complex
pdb|1SJE|B Chain B, Hla-Dr1 Complexed With A 16 Residue Hiv Capsid Peptide
Bound In A Hairpin Conformation
pdb|1SJH|B Chain B, Hla-Dr1 Complexed With A 13 Residue Hiv Capsid Peptide
pdb|1T5W|B Chain B, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
pdb|1T5W|E Chain E, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
pdb|1T5X|B Chain B, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr) And The Superantigen Sec3-3b2
pdb|2G9H|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin I (Sei) In
Complex With A Human Mhc Class Ii Molecule
pdb|2OJE|B Chain B, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
pdb|2OJE|F Chain F, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
pdb|2IAM|B Chain B, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|B Chain B, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|G Chain G, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|L Chain L, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|Q Chain Q, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2ICW|B Chain B, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|E Chain E, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2IPK|B Chain B, Crystal Structure Of The Mhc Class Ii Molecule Hla-Dr1 In
Complex With The Fluorogenic Peptide, Acpkxvkqntlklat
(X3-
[5-(Dimethylamino)-1,3-Dioxo-1,
3-Dihydro-2h-Isoindol-2-Yl]- L-Alanine) And The
Superantigen, Sec3 Variant 3b2
pdb|2XN9|E Chain E, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|3QXA|B Chain B, Hla-Dr1 Bound With Clip Peptide
pdb|3QXA|E Chain E, Hla-Dr1 Bound With Clip Peptide
pdb|3QXD|B Chain B, F54c Hla-Dr1 Bound With Clip Peptide
pdb|3QXD|E Chain E, F54c Hla-Dr1 Bound With Clip Peptide
pdb|4E41|B Chain B, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|G Chain G, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 190
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 112 HNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 171
Query: 124 TCRA 127
TC+
Sbjct: 172 TCQV 175
>pdb|1Q8M|A Chain A, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
pdb|1Q8M|B Chain B, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
pdb|1Q8M|C Chain C, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
pdb|1Q8M|D Chain D, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
Length = 127
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 88 KNGRPVTIGHR-FRPIHDFGYVALDIIDTIPEDSGTYTC 125
KN PV +G HD G + + +++ EDSG Y C
Sbjct: 60 KNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC 98
>pdb|1H3T|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3T|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3U|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3U|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3V|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3V|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3W|M Chain M, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2, Sg C2221
pdb|1H3Y|A Chain A, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3Y|B Chain B, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3X|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
pdb|1H3X|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
Length = 223
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GV++ K R Q++ Y + + +
Sbjct: 27 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR-EQQYNSTYRVVSVLTVL 85
Query: 703 P---ADSGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 86 HQNWLDGKEYKCKVSNKALPA 106
>pdb|1FC1|A Chain A, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC1|B Chain B, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC2|D Chain D, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-and 2.8-angstroms
Resolution
Length = 224
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GV++ K R Q++ Y + + +
Sbjct: 29 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR-EQQYNSTYRVVSVLTVL 87
Query: 703 P---ADSGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 88 HQNWLDGKEYKCKVSNKALPA 108
>pdb|1E4K|A Chain A, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4K|B Chain B, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
Length = 225
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GV++ K R Q++ Y + + +
Sbjct: 29 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR-EQQYNSTYRVVSVLTVL 87
Query: 703 P---ADSGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 88 HQNWLDGKEYKCKVSNKALPA 108
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 79 DSNLKVE---WFK------NGRPVTIGHRFRPIHDFGY--VALDIIDTIPEDSGTYTCRA 127
D++L+++ W++ N + ++IG R+ + G +L I D EDSGTY C+A
Sbjct: 26 DASLELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85
Query: 128 VNLVGFAEVQATLQCRGSAGILTS 151
+ + +L RG G T+
Sbjct: 86 FYSLPLRDYNYSLLFRGEKGAGTA 109
>pdb|2Q6W|B Chain B, The Structure Of Hla-Dra, Drb30101 (Dr52a) With Bound
Platelet Integrin Peptide Associated With Fetal And
Neonatal Alloimmune Thrombocytopenia
pdb|2Q6W|E Chain E, The Structure Of Hla-Dra, Drb30101 (Dr52a) With Bound
Platelet Integrin Peptide Associated With Fetal And
Neonatal Alloimmune Thrombocytopenia
Length = 190
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 112 HNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 171
Query: 124 TCRA 127
TC+
Sbjct: 172 TCQV 175
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 344 DSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401
D + WLR+GV + SNR + + + + P DSG Y C + G T
Sbjct: 35 DDVQSINWLRDGVQLVESNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTT 88
>pdb|1HZH|H Chain H, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1HZH|K Chain K, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
Length = 457
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL 679
+M ++ C VV V DP ++F W+V+GVE+
Sbjct: 261 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV 294
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 341 PVGDSKL-KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY------PEDSGTYTCRAV 393
P G + + + WL+NG + +R+ GY N ++ P D G YTC
Sbjct: 36 PAGGNPMPTMRWLKNGKEFKQEHRIG-----GYKVRNQHWSLIMESVVPSDKGNYTCVVE 90
Query: 394 NELG 397
NE G
Sbjct: 91 NEYG 94
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 341 PVGDSKL-KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY------PEDSGTYTCRAV 393
P G + + + WL+NG + +R+ GY N ++ P D G YTC
Sbjct: 42 PAGGNPMPTMRWLKNGKEFKQEHRIG-----GYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 394 NELG 397
NE G
Sbjct: 97 NEYG 100
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 341 PVGDSKL-KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY------PEDSGTYTCRAV 393
P G + + + WL+NG + +R+ GY N ++ P D G YTC
Sbjct: 42 PAGGNPMPTMRWLKNGKEFKQEHRIG-----GYKVRNQHWSLIMESVVPSDKGNYTCVVE 96
Query: 394 NELG 397
NE G
Sbjct: 97 NEYG 100
>pdb|2RCJ|C Chain C, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|D Chain D, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|G Chain G, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|H Chain H, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|K Chain K, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|L Chain L, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|O Chain O, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|P Chain P, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|S Chain S, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|T Chain T, Solution Structure Of Human Immunoglobulin M
Length = 523
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GV++ K R Q++ Y + + +
Sbjct: 331 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR-EQQYNSTYRVVSVLTVL 389
Query: 703 P---ADSGVYMCKAINRA 717
D Y CK N+A
Sbjct: 390 HQNWLDGKEYKCKVSNKA 407
>pdb|3O6F|B Chain B, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3O6F|F Chain F, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3T0E|B Chain B, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
Length = 221
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 141 HNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 200
Query: 124 TCRA 127
TC+
Sbjct: 201 TCQV 204
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
+++W+KNG P+ H + H L I++ D+G YT N
Sbjct: 231 EIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTN 272
>pdb|1SMO|A Chain A, Crystal Structure Of Human Triggering Receptor Expressed
On Myeloid Cells 1 (Trem-1) At 1.47 .
pdb|1SMO|B Chain B, Crystal Structure Of Human Triggering Receptor Expressed
On Myeloid Cells 1 (Trem-1) At 1.47
Length = 119
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 88 KNGRPVTIGHR-FRPIHDFGYVALDIIDTIPEDSGTYTC 125
KN PV +G HD G + + +++ EDSG Y C
Sbjct: 55 KNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC 93
>pdb|3HKF|A Chain A, Murine Unglycosylated Igg Fc Fragment
Length = 214
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHD-----F 105
YT+ PK + C + ++ VEW NG+P +PI D F
Sbjct: 115 YTIPPPKE---QMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYF 171
Query: 106 GYVALDIIDTIPEDSGTYTCRAVN 129
Y L++ + E T+TC ++
Sbjct: 172 VYSKLNVQKSNWEAGNTFTCSVLH 195
>pdb|2SEB|B Chain B, X-Ray Crystal Structure Of Hla-Dr4 Complexed With A
Peptide From Human Collagen Ii
pdb|1D5X|B Chain B, X-ray Crystal Structure Of Hla-dr4 Complexed With
Dipeptide Mimetic And Seb
pdb|1D5Z|B Chain B, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptidomimetic And Seb
pdb|1D6E|B Chain B, Crystal Structure Of Hla-Dr4 Complex With Peptidomimetic
And Seb
Length = 192
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 112 HNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 171
Query: 124 TCRA 127
TC+
Sbjct: 172 TCQV 175
>pdb|1D5M|B Chain B, X-Ray Crystal Structure Of Hla-Dr4 Complexed With Peptide
And Seb
pdb|1J8H|B Chain B, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr4
Length = 192
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI---HDFGYVALDIIDTIPEDSGTY 123
H C + +++V WF+NG+ G + D+ + L +++T+P Y
Sbjct: 112 HNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 171
Query: 124 TCRA 127
TC+
Sbjct: 172 TCQV 175
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 76/202 (37%), Gaps = 45/202 (22%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLK-VEWF--RNEKPLEDSSRITTK-HDFGYVAMDLSHVRA 571
+ G++ F C++ GD K + WF EK + RI+ +D + + +
Sbjct: 14 ISVGESKFFLCQV--AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANI 71
Query: 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631
+D GIY C V TA +++A + + K Q+L +P PQE
Sbjct: 72 DDAGIYKC---------VVTAEDGTQSEATVNV--------KIFQKLMFKNAPTPQE--- 111
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
EG+ A C VV PT+ ++ V LK RF V +
Sbjct: 112 ----------------FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN- 154
Query: 692 GYVTLDITKCVPADSGVYMCKA 713
Y L I D G Y C+
Sbjct: 155 NY--LQIRGIKKTDEGTYRCEG 174
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 341 PVGDSKL-KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY------PEDSGTYTCRAV 393
P G + + + WL+NG + +R+ GY N ++ P D G YTC
Sbjct: 35 PAGGNPMPTMRWLKNGKEFKQEHRIG-----GYKVRNQHWSLIMESVVPSDKGNYTCVVE 89
Query: 394 NELG 397
NE G
Sbjct: 90 NEYG 93
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 341 PVGDSKL-KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY------PEDSGTYTCRAV 393
P G + + + WL+NG + +R+ GY N ++ P D G YTC
Sbjct: 31 PAGGNPMPTMRWLKNGKEFKQEHRIG-----GYKVRNQHWSLIMESVVPSDKGNYTCVVE 85
Query: 394 NELG 397
NE G
Sbjct: 86 NEYG 89
>pdb|2VOL|A Chain A, Murine Trim21 In Complex With Murine Igg Fc
Length = 207
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHD-----F 105
YT+ PK + C + ++ VEW NG+P +PI D F
Sbjct: 113 YTLPPPKE---QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYF 169
Query: 106 GYVALDIIDTIPEDSGTYTCRAVN 129
Y L++ + E T+TC ++
Sbjct: 170 VYSKLNVQKSNWEAGNTFTCSVLH 193
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 341 PVGDSKL-KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY------PEDSGTYTCRAV 393
P G + + + WL+NG + +R+ GY N ++ P D G YTC
Sbjct: 32 PAGGNPMPTMRWLKNGKEFKQEHRIG-----GYKVRNQHWSLIMESVVPSDKGNYTCVVE 86
Query: 394 NELG 397
NE G
Sbjct: 87 NEYG 90
>pdb|2D4D|A Chain A, The Crystal Structure Of Human Beta2-Microglobulin, L39w
W60f W95f Mutant
Length = 100
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 64 ERGHAHF-ECKLEPVTDSNLKVEWFKNGRPV-TIGHR-FRPIHDFGYVALDIIDTIPEDS 120
E G ++F C + S+++V+W KNG + + H DF + L + P +
Sbjct: 17 ENGKSNFLNCYVSGFHPSDIEVDWLKNGERIEKVEHSDLSFSKDFSFYLLYYTEFTPTEK 76
Query: 121 GTYTCRAVNLVGFAE 135
Y CR VN V ++
Sbjct: 77 DEYACR-VNHVTLSQ 90
>pdb|1MCO|H Chain H, Three-Dimensional Structure Of A Human Immunoglobulin With
A Hinge Deletion
Length = 428
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVEL---KMGSRFHVQHDFGYVTLDITKCV 702
+M ++ C VV V DP ++F W+V+GV++ K R Q++ Y + + +
Sbjct: 236 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR-EQQYNSTYRVVSVLTVL 294
Query: 703 P---ADSGVYMCKAINRAGEA 720
D Y CK N+A A
Sbjct: 295 HQNWLDGKEYKCKVSNKALPA 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,819,712
Number of Sequences: 62578
Number of extensions: 1016845
Number of successful extensions: 4675
Number of sequences better than 100.0: 258
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 3794
Number of HSP's gapped (non-prelim): 1040
length of query: 808
length of database: 14,973,337
effective HSP length: 107
effective length of query: 701
effective length of database: 8,277,491
effective search space: 5802521191
effective search space used: 5802521191
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)