Query psy2145
Match_columns 808
No_of_seqs 411 out of 3021
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 17:10:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 4.3E-60 9.3E-65 523.8 46.1 503 15-736 99-619 (1051)
2 KOG3513|consensus 100.0 9.8E-56 2.1E-60 489.3 47.1 469 50-739 40-524 (1051)
3 KOG4222|consensus 100.0 3.9E-46 8.5E-51 406.9 26.1 465 47-731 29-511 (1281)
4 KOG4221|consensus 100.0 1.1E-43 2.4E-48 389.8 36.9 496 49-736 41-616 (1381)
5 KOG4221|consensus 100.0 5.7E-38 1.2E-42 345.1 37.4 486 22-600 111-612 (1381)
6 KOG4222|consensus 100.0 2.8E-37 6.2E-42 337.8 25.8 396 23-600 103-512 (1281)
7 KOG4194|consensus 100.0 8.8E-32 1.9E-36 276.2 21.0 283 181-602 501-801 (873)
8 KOG4194|consensus 100.0 1.5E-30 3.3E-35 267.1 21.5 279 49-411 503-799 (873)
9 PHA02785 IL-beta-binding prote 100.0 1.1E-28 2.5E-33 257.3 29.7 261 323-722 34-320 (326)
10 PHA02785 IL-beta-binding prote 100.0 1.1E-27 2.4E-32 249.8 30.7 257 61-400 37-319 (326)
11 KOG3515|consensus 99.9 2.6E-24 5.5E-29 234.3 21.0 473 52-737 10-501 (741)
12 PHA02826 IL-1 receptor-like pr 99.9 7.2E-21 1.6E-25 185.6 19.5 159 515-720 33-214 (227)
13 PHA02826 IL-1 receptor-like pr 99.8 6.5E-20 1.4E-24 178.9 20.0 162 56-264 29-211 (227)
14 KOG3515|consensus 99.8 9.4E-20 2E-24 199.0 21.6 507 16-732 63-593 (741)
15 cd05762 Ig8_MLCK Eighth immuno 99.8 2.2E-18 4.8E-23 145.6 13.2 96 636-734 1-96 (98)
16 cd05762 Ig8_MLCK Eighth immuno 99.7 7E-17 1.5E-21 136.5 12.7 95 504-601 1-95 (98)
17 cd05737 Ig_Myomesin_like_C C-t 99.7 8.7E-17 1.9E-21 134.9 11.7 87 640-728 5-92 (92)
18 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 1.9E-16 4.1E-21 130.3 11.8 81 646-728 5-86 (86)
19 cd05892 Ig_Myotilin_C C-termin 99.7 1.7E-16 3.7E-21 126.1 10.1 73 654-728 1-75 (75)
20 cd05851 Ig3_Contactin-1 Third 99.7 1.7E-16 3.7E-21 131.4 10.0 87 636-729 2-88 (88)
21 PF07679 I-set: Immunoglobulin 99.7 5.2E-16 1.1E-20 130.3 12.3 90 636-728 1-90 (90)
22 cd05747 Ig5_Titin_like M5, fif 99.7 6.1E-16 1.3E-20 129.9 11.7 90 635-727 3-92 (92)
23 cd05852 Ig5_Contactin-1 Fifth 99.7 3.7E-16 8E-21 123.8 9.2 73 651-728 1-73 (73)
24 cd05893 Ig_Palladin_C C-termin 99.7 4.8E-16 1E-20 123.8 9.9 73 654-728 1-75 (75)
25 cd04975 Ig4_SCFR_like Fourth i 99.7 6.8E-16 1.5E-20 130.4 10.7 82 646-729 13-100 (101)
26 cd05745 Ig3_Peroxidasin Third 99.6 5.3E-16 1.2E-20 124.2 9.0 74 650-728 1-74 (74)
27 cd05748 Ig_Titin_like Immunogl 99.6 1.6E-15 3.6E-20 121.6 11.1 74 653-728 1-74 (74)
28 cd05851 Ig3_Contactin-1 Third 99.6 1.2E-15 2.5E-20 126.5 10.3 88 503-597 1-88 (88)
29 cd05735 Ig8_DSCAM Eight immuno 99.6 3.7E-15 7.9E-20 123.4 12.2 81 651-733 1-86 (88)
30 cd05744 Ig_Myotilin_C_like Imm 99.6 3.5E-15 7.6E-20 119.3 10.7 73 654-728 1-75 (75)
31 cd05853 Ig6_Contactin-4 Sixth 99.6 3.2E-15 7E-20 120.8 10.0 81 652-732 1-85 (85)
32 cd05859 Ig4_PDGFR-alpha Fourth 99.6 3.1E-15 6.8E-20 126.6 10.4 82 646-729 13-100 (101)
33 cd04972 Ig_TrkABC_d4 Fourth do 99.6 5.1E-15 1.1E-19 123.7 11.6 81 646-728 10-90 (90)
34 cd05737 Ig_Myomesin_like_C C-t 99.6 5.2E-15 1.1E-19 124.1 11.6 88 507-596 4-92 (92)
35 cd05854 Ig6_Contactin-2 Sixth 99.6 6E-15 1.3E-19 121.0 11.7 79 652-732 1-85 (85)
36 PF07679 I-set: Immunoglobulin 99.6 5.6E-15 1.2E-19 124.0 11.6 90 504-596 1-90 (90)
37 cd05723 Ig4_Neogenin Fourth im 99.6 4.3E-15 9.4E-20 117.6 10.2 71 653-728 1-71 (71)
38 cd05870 Ig5_NCAM-2 Fifth immun 99.6 5.6E-15 1.2E-19 125.6 11.5 90 635-728 2-98 (98)
39 cd05747 Ig5_Titin_like M5, fif 99.6 6.8E-15 1.5E-19 123.5 11.9 89 503-594 3-91 (92)
40 cd05892 Ig_Myotilin_C C-termin 99.6 5.4E-15 1.2E-19 117.5 10.3 73 522-596 1-75 (75)
41 cd05865 Ig1_NCAM-1 First immun 99.6 7.2E-15 1.6E-19 123.1 11.5 81 646-728 10-95 (96)
42 cd05728 Ig4_Contactin-2-like F 99.6 3.7E-15 7.9E-20 122.8 9.5 77 646-728 9-85 (85)
43 cd05730 Ig3_NCAM-1_like Third 99.6 6.3E-15 1.4E-19 124.7 11.2 82 646-731 13-95 (95)
44 cd05743 Ig_Perlecan_D2_like Im 99.6 6.9E-15 1.5E-19 119.0 10.7 77 651-729 1-77 (78)
45 cd05869 Ig5_NCAM-1 Fifth immun 99.6 7.3E-15 1.6E-19 124.6 11.4 91 635-728 2-97 (97)
46 cd05867 Ig4_L1-CAM_like Fourth 99.6 8.6E-15 1.9E-19 117.9 11.0 74 651-728 1-75 (76)
47 cd05891 Ig_M-protein_C C-termi 99.6 1E-14 2.2E-19 121.9 11.6 82 645-728 10-92 (92)
48 cd05863 Ig2_VEGFR-3 Second imm 99.6 4E-15 8.7E-20 114.6 8.3 66 654-729 1-66 (67)
49 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 1.2E-14 2.7E-19 119.5 11.7 80 515-596 6-86 (86)
50 cd05868 Ig4_NrCAM Fourth immun 99.6 7.5E-15 1.6E-19 117.9 9.9 74 651-728 1-75 (76)
51 cd05866 Ig1_NCAM-2 First immun 99.6 1.5E-14 3.3E-19 119.8 11.7 80 646-728 10-91 (92)
52 cd05732 Ig5_NCAM-1_like Fifth 99.6 9E-15 2E-19 124.3 10.6 90 635-728 2-96 (96)
53 cd04968 Ig3_Contactin_like Thi 99.6 1.2E-14 2.5E-19 121.0 10.5 80 644-729 9-88 (88)
54 cd05857 Ig2_FGFR Second immuno 99.6 1.9E-14 4.1E-19 119.1 11.8 80 647-728 5-85 (85)
55 cd05852 Ig5_Contactin-1 Fifth 99.6 9.1E-15 2E-19 115.8 9.3 73 519-596 1-73 (73)
56 cd05893 Ig_Palladin_C C-termin 99.6 1.4E-14 3.1E-19 115.3 10.1 73 522-596 1-75 (75)
57 cd05855 Ig_TrkB_d5 Fifth domai 99.6 1.4E-14 3E-19 115.3 9.8 71 655-727 2-77 (79)
58 cd05773 Ig8_hNephrin_like Eigh 99.6 2.3E-14 5E-19 123.7 11.9 82 650-733 22-109 (109)
59 cd04969 Ig5_Contactin_like Fif 99.6 1.2E-14 2.6E-19 116.1 9.3 73 651-728 1-73 (73)
60 cd04975 Ig4_SCFR_like Fourth i 99.6 2.4E-14 5.3E-19 120.9 11.4 81 515-597 14-100 (101)
61 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 2.3E-14 4.9E-19 116.0 10.4 71 655-727 2-79 (81)
62 cd05848 Ig1_Contactin-5 First 99.6 3.2E-14 6.9E-19 119.4 11.6 83 636-722 2-87 (94)
63 cd05745 Ig3_Peroxidasin Third 99.6 1.4E-14 2.9E-19 116.0 8.9 74 518-596 1-74 (74)
64 cd04978 Ig4_L1-NrCAM_like Four 99.6 2.1E-14 4.6E-19 116.0 9.8 74 651-728 1-75 (76)
65 cd05740 Ig_CEACAM_D4 Fourth im 99.6 4.7E-14 1E-18 117.2 11.7 79 644-728 11-90 (91)
66 cd05746 Ig4_Peroxidasin Fourth 99.6 1.2E-14 2.6E-19 114.4 7.7 69 654-727 1-69 (69)
67 cd05728 Ig4_Contactin-2-like F 99.5 3.1E-14 6.8E-19 117.3 9.8 84 506-596 2-85 (85)
68 cd04976 Ig2_VEGFR Second immun 99.5 2.2E-14 4.8E-19 113.3 8.4 70 654-729 1-70 (71)
69 cd05748 Ig_Titin_like Immunogl 99.5 6.8E-14 1.5E-18 112.1 11.1 74 521-596 1-74 (74)
70 cd05859 Ig4_PDGFR-alpha Fourth 99.5 5E-14 1.1E-18 119.3 10.6 82 514-597 13-100 (101)
71 cd04972 Ig_TrkABC_d4 Fourth do 99.5 7.9E-14 1.7E-18 116.5 11.6 87 507-596 4-90 (90)
72 cd05864 Ig2_VEGFR-2 Second imm 99.5 2.5E-14 5.4E-19 111.8 7.9 69 654-729 1-69 (70)
73 cd04970 Ig6_Contactin_like Six 99.5 5.9E-14 1.3E-18 115.9 10.6 79 652-732 1-85 (85)
74 cd04973 Ig1_FGFR First immunog 99.5 4E-14 8.6E-19 114.7 9.3 76 646-728 4-79 (79)
75 cd07693 Ig1_Robo First immunog 99.5 7.8E-14 1.7E-18 119.8 11.7 90 636-728 2-99 (100)
76 cd05744 Ig_Myotilin_C_like Imm 99.5 8.6E-14 1.9E-18 111.3 10.9 73 522-596 1-75 (75)
77 cd05760 Ig2_PTK7 Second immuno 99.5 5.3E-14 1.1E-18 113.4 9.5 71 654-728 1-72 (77)
78 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 5.8E-14 1.3E-18 109.9 9.4 69 651-727 1-69 (69)
79 cd05735 Ig8_DSCAM Eight immuno 99.5 1.5E-13 3.4E-18 113.6 12.0 80 519-600 1-85 (88)
80 cd05730 Ig3_NCAM-1_like Third 99.5 1.2E-13 2.6E-18 116.9 11.6 80 515-598 14-94 (95)
81 cd05870 Ig5_NCAM-2 Fifth immun 99.5 1.1E-13 2.3E-18 117.7 11.2 90 503-596 2-98 (98)
82 cd05876 Ig3_L1-CAM Third immun 99.5 4.6E-14 9.9E-19 111.8 7.9 71 654-729 1-71 (71)
83 cd05726 Ig4_Robo Fhird immunog 99.5 7.9E-14 1.7E-18 116.5 9.7 76 651-731 1-84 (90)
84 cd05723 Ig4_Neogenin Fourth im 99.5 1.1E-13 2.4E-18 109.6 10.0 71 521-596 1-71 (71)
85 cd05743 Ig_Perlecan_D2_like Im 99.5 1.4E-13 3E-18 111.4 10.7 77 519-597 1-77 (78)
86 cd05850 Ig1_Contactin-2 First 99.5 2.3E-13 5E-18 114.2 12.4 86 636-726 2-92 (94)
87 cd05867 Ig4_L1-CAM_like Fourth 99.5 1.8E-13 3.9E-18 110.2 11.1 74 519-596 1-75 (76)
88 cd05763 Ig_1 Subgroup of the i 99.5 8.8E-14 1.9E-18 111.8 9.0 71 654-728 1-74 (75)
89 cd05736 Ig2_Follistatin_like S 99.5 1.1E-13 2.4E-18 111.6 9.6 75 654-730 1-75 (76)
90 cd05866 Ig1_NCAM-2 First immun 99.5 1.8E-13 4E-18 113.4 11.0 85 54-142 5-91 (92)
91 cd04968 Ig3_Contactin_like Thi 99.5 2.4E-13 5.2E-18 113.1 11.5 87 183-275 1-87 (88)
92 cd05869 Ig5_NCAM-1 Fifth immun 99.5 2.3E-13 5E-18 115.4 11.5 91 503-596 2-97 (97)
93 cd05863 Ig2_VEGFR-3 Second imm 99.5 1.1E-13 2.4E-18 106.6 8.5 66 522-597 1-66 (67)
94 cd05868 Ig4_NrCAM Fourth immun 99.5 1.9E-13 4.1E-18 109.7 10.1 74 519-596 1-75 (76)
95 cd05725 Ig3_Robo Third immunog 99.5 1.3E-13 2.9E-18 108.6 8.9 69 654-728 1-69 (69)
96 cd04974 Ig3_FGFR Third immunog 99.5 7.5E-14 1.6E-18 116.3 7.8 77 651-729 1-90 (90)
97 cd05764 Ig_2 Subgroup of the i 99.5 2.2E-13 4.7E-18 109.3 9.9 73 651-728 1-74 (74)
98 cd05865 Ig1_NCAM-1 First immun 99.5 4.1E-13 9E-18 112.5 11.9 87 187-275 4-95 (96)
99 cd05858 Ig3_FGFR-2 Third immun 99.5 2.1E-13 4.6E-18 113.8 10.0 76 651-728 1-89 (90)
100 cd05732 Ig5_NCAM-1_like Fifth 99.5 2.6E-13 5.7E-18 115.2 10.7 90 503-596 2-96 (96)
101 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 1.4E-13 3E-18 110.0 8.3 71 654-729 1-74 (74)
102 cd05854 Ig6_Contactin-2 Sixth 99.5 4.5E-13 9.7E-18 109.9 11.6 78 520-599 1-84 (85)
103 cd04969 Ig5_Contactin_like Fif 99.5 2.3E-13 5E-18 108.6 9.4 73 519-596 1-73 (73)
104 cd05857 Ig2_FGFR Second immuno 99.5 5E-13 1.1E-17 110.6 11.7 80 515-596 5-85 (85)
105 cd05758 Ig5_KIRREL3-like Fifth 99.5 4.7E-13 1E-17 113.7 11.8 79 646-726 11-97 (98)
106 cd05891 Ig_M-protein_C C-termi 99.5 4.3E-13 9.4E-18 112.1 10.9 85 55-142 7-92 (92)
107 cd05856 Ig2_FGFRL1-like Second 99.5 1.6E-13 3.5E-18 112.8 8.1 78 647-728 5-82 (82)
108 cd05853 Ig6_Contactin-4 Sixth 99.5 3.5E-13 7.5E-18 109.0 9.7 81 520-600 1-85 (85)
109 cd05750 Ig_Pro_neuregulin Immu 99.5 2.9E-13 6.2E-18 109.1 9.2 71 654-726 1-75 (75)
110 cd05849 Ig1_Contactin-1 First 99.5 7.2E-13 1.6E-17 110.6 11.7 84 636-726 2-91 (93)
111 cd05855 Ig_TrkB_d5 Fifth domai 99.5 3.6E-13 7.8E-18 107.2 9.3 71 523-595 2-77 (79)
112 cd05848 Ig1_Contactin-5 First 99.5 7.7E-13 1.7E-17 111.0 11.8 84 504-591 2-88 (94)
113 cd05731 Ig3_L1-CAM_like Third 99.4 2.9E-13 6.3E-18 107.7 8.2 71 654-729 1-71 (71)
114 cd05746 Ig4_Peroxidasin Fourth 99.4 3.3E-13 7.1E-18 106.2 8.1 68 522-594 1-68 (69)
115 cd04978 Ig4_L1-NrCAM_like Four 99.4 7.2E-13 1.6E-17 107.0 10.4 74 519-596 1-75 (76)
116 cd04976 Ig2_VEGFR Second immun 99.4 4.5E-13 9.7E-18 105.8 8.6 70 522-597 1-70 (71)
117 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 9E-13 1.9E-17 106.6 10.5 71 523-595 2-79 (81)
118 cd07693 Ig1_Robo First immunog 99.4 1.4E-12 3E-17 111.9 12.4 91 183-275 1-99 (100)
119 cd05724 Ig2_Robo Second immuno 99.4 6.7E-13 1.5E-17 110.2 9.9 79 646-728 6-86 (86)
120 cd05740 Ig_CEACAM_D4 Fourth im 99.4 1.7E-12 3.7E-17 107.9 12.0 77 514-596 13-90 (91)
121 cd05864 Ig2_VEGFR-2 Second imm 99.4 4.4E-13 9.6E-18 104.8 7.9 69 522-597 1-69 (70)
122 cd05850 Ig1_Contactin-2 First 99.4 1.8E-12 3.9E-17 108.9 12.2 86 504-594 2-92 (94)
123 cd05760 Ig2_PTK7 Second immuno 99.4 1.1E-12 2.3E-17 105.8 10.1 72 522-597 1-73 (77)
124 cd05722 Ig1_Neogenin First imm 99.4 9.6E-13 2.1E-17 111.2 10.2 78 646-728 9-95 (95)
125 cd04977 Ig1_NCAM-1_like First 99.4 1.3E-12 2.8E-17 109.2 10.9 80 646-728 10-92 (92)
126 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 1.1E-12 2.4E-17 102.7 9.6 69 519-595 1-69 (69)
127 cd04973 Ig1_FGFR First immunog 99.4 1.2E-12 2.5E-17 106.1 10.0 79 190-275 1-79 (79)
128 cd05733 Ig6_L1-CAM_like Sixth 99.4 6.6E-13 1.4E-17 106.9 8.4 67 654-722 1-71 (77)
129 cd05773 Ig8_hNephrin_like Eigh 99.4 2.2E-12 4.7E-17 111.5 12.0 96 503-600 4-108 (109)
130 cd05765 Ig_3 Subgroup of the i 99.4 7.7E-13 1.7E-17 108.4 8.8 73 651-728 1-81 (81)
131 cd05876 Ig3_L1-CAM Third immun 99.4 8.3E-13 1.8E-17 104.5 8.6 71 522-597 1-71 (71)
132 cd05749 Ig2_Tyro3_like Second 99.4 8E-13 1.7E-17 106.6 8.2 71 646-726 8-80 (81)
133 cd07702 Ig2_VEGFR-1 Second imm 99.4 8.6E-13 1.9E-17 103.2 8.0 68 654-727 1-69 (72)
134 cd05874 Ig6_NrCAM Sixth immuno 99.4 1.5E-12 3.2E-17 104.6 9.2 66 654-723 1-72 (77)
135 cd05756 Ig1_IL1R_like First im 99.4 9.8E-13 2.1E-17 109.8 8.1 78 647-728 10-94 (94)
136 cd05895 Ig_Pro_neuregulin-1 Im 99.4 2E-12 4.3E-17 104.2 9.5 72 654-726 1-76 (76)
137 cd05763 Ig_1 Subgroup of the i 99.4 2E-12 4.3E-17 103.8 9.5 71 522-596 1-74 (75)
138 cd04970 Ig6_Contactin_like Six 99.4 2.8E-12 6.1E-17 105.8 10.4 78 520-599 1-84 (85)
139 cd04967 Ig1_Contactin First Ig 99.4 3.2E-12 6.9E-17 107.0 10.8 83 636-722 2-87 (91)
140 cd05764 Ig_2 Subgroup of the i 99.4 2.5E-12 5.5E-17 103.1 9.6 73 519-596 1-74 (74)
141 cd05849 Ig1_Contactin-1 First 99.4 7E-12 1.5E-16 104.7 12.3 85 183-273 1-91 (93)
142 cd05736 Ig2_Follistatin_like S 99.4 3E-12 6.5E-17 103.2 9.8 75 522-598 1-75 (76)
143 cd05726 Ig4_Robo Fhird immunog 99.4 2.4E-12 5.2E-17 107.4 9.5 76 519-599 1-84 (90)
144 cd05875 Ig6_hNeurofascin_like 99.4 2.6E-12 5.5E-17 103.2 9.1 66 654-723 1-72 (77)
145 cd05725 Ig3_Robo Third immunog 99.4 2.9E-12 6.3E-17 101.0 9.2 69 522-596 1-69 (69)
146 cd05771 IgC_Tapasin_R Tapasin- 99.4 1.1E-11 2.4E-16 113.0 14.3 116 109-263 2-130 (139)
147 cd05758 Ig5_KIRREL3-like Fifth 99.4 6.6E-12 1.4E-16 106.7 11.8 88 503-594 2-97 (98)
148 cd05856 Ig2_FGFRL1-like Second 99.4 2.6E-12 5.7E-17 105.6 8.7 78 515-596 5-82 (82)
149 cd05898 Ig5_KIRREL3 Fifth immu 99.4 8.6E-12 1.9E-16 103.7 11.7 80 645-726 10-97 (98)
150 cd05742 Ig1_VEGFR_like First i 99.4 2.9E-12 6.2E-17 105.5 8.8 76 651-728 1-83 (84)
151 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 3.4E-12 7.3E-17 102.0 8.8 70 522-596 1-73 (74)
152 cd04974 Ig3_FGFR Third immunog 99.3 2.3E-12 5.1E-17 107.3 7.8 76 519-596 1-89 (90)
153 cd05750 Ig_Pro_neuregulin Immu 99.3 5.4E-12 1.2E-16 101.6 9.5 71 522-594 1-75 (75)
154 cd05858 Ig3_FGFR-2 Third immun 99.3 6.7E-12 1.4E-16 104.7 9.7 76 519-596 1-89 (90)
155 cd05731 Ig3_L1-CAM_like Third 99.3 4.9E-12 1.1E-16 100.6 8.3 70 522-596 1-70 (71)
156 cd05724 Ig2_Robo Second immuno 99.3 7.6E-12 1.6E-16 103.8 9.9 82 55-141 2-85 (86)
157 cd05749 Ig2_Tyro3_like Second 99.3 6.6E-12 1.4E-16 101.2 8.8 78 506-594 1-80 (81)
158 cd05722 Ig1_Neogenin First imm 99.3 1.4E-11 3.1E-16 104.0 10.8 85 186-275 2-95 (95)
159 cd04977 Ig1_NCAM-1_like First 99.3 2.1E-11 4.6E-16 101.9 11.6 86 186-274 3-91 (92)
160 cd05771 IgC_Tapasin_R Tapasin- 99.3 4.9E-11 1.1E-15 108.7 15.0 116 563-717 2-131 (139)
161 cd05756 Ig1_IL1R_like First im 99.3 8.9E-12 1.9E-16 104.1 8.4 78 515-596 10-94 (94)
162 cd07702 Ig2_VEGFR-1 Second imm 99.3 1.4E-11 3.1E-16 96.3 9.0 69 522-596 1-70 (72)
163 cd05734 Ig7_DSCAM Seventh immu 99.3 8E-12 1.7E-16 101.4 7.8 70 654-728 1-79 (79)
164 cd05729 Ig2_FGFR_like Second i 99.3 3.1E-11 6.8E-16 99.9 11.5 80 647-728 5-85 (85)
165 cd04967 Ig1_Contactin First Ig 99.3 3E-11 6.6E-16 101.0 10.8 83 504-590 2-87 (91)
166 cd05752 Ig1_FcgammaR_like Frst 99.3 9E-12 1.9E-16 99.8 7.2 68 646-728 10-78 (78)
167 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 2.6E-11 5.7E-16 99.3 10.0 77 651-729 1-83 (84)
168 cd05765 Ig_3 Subgroup of the i 99.3 2.2E-11 4.8E-16 99.7 9.0 73 519-596 1-81 (81)
169 cd05754 Ig3_Perlecan_like Thir 99.3 2.2E-11 4.9E-16 100.5 9.1 74 646-726 11-84 (85)
170 cd07701 Ig1_Necl-3 First (N-te 99.3 3.2E-11 7E-16 101.1 9.9 80 646-728 7-95 (95)
171 cd05895 Ig_Pro_neuregulin-1 Im 99.3 3.8E-11 8.2E-16 96.7 9.7 71 522-593 1-75 (76)
172 cd05727 Ig2_Contactin-2-like S 99.3 1.1E-11 2.3E-16 102.1 6.4 74 644-720 11-86 (96)
173 cd05757 Ig2_IL1R_like Second i 99.2 1.9E-11 4.1E-16 101.3 7.8 80 646-729 5-87 (92)
174 cd05733 Ig6_L1-CAM_like Sixth 99.2 2.9E-11 6.3E-16 97.4 8.5 65 522-590 1-71 (77)
175 cd05875 Ig6_hNeurofascin_like 99.2 5.4E-11 1.2E-15 95.5 9.6 66 522-591 1-72 (77)
176 cd05752 Ig1_FcgammaR_like Frst 99.2 2.7E-11 5.9E-16 97.1 7.7 67 184-263 1-68 (78)
177 cd05873 Ig_Sema4D_like Immunog 99.2 5.2E-11 1.1E-15 96.7 9.3 65 646-717 6-71 (87)
178 cd05742 Ig1_VEGFR_like First i 99.2 4.7E-11 1E-15 98.2 9.0 76 519-596 1-83 (84)
179 cd05874 Ig6_NrCAM Sixth immuno 99.2 6.6E-11 1.4E-15 95.0 9.5 66 522-591 1-72 (77)
180 TIGR00864 PCC polycystin catio 99.2 9.2E-07 2E-11 109.9 48.3 450 13-731 1658-2127(2740)
181 cd05873 Ig_Sema4D_like Immunog 99.2 1.3E-10 2.9E-15 94.3 10.3 69 189-264 2-71 (87)
182 cd07701 Ig1_Necl-3 First (N-te 99.2 1.2E-10 2.7E-15 97.6 10.0 84 55-142 3-95 (95)
183 cd05754 Ig3_Perlecan_like Thir 99.2 1E-10 2.2E-15 96.5 8.6 81 52-140 4-84 (85)
184 cd05882 Ig1_Necl-1 First (N-te 99.2 2.8E-10 6E-15 95.0 10.8 81 645-728 6-95 (95)
185 cd05729 Ig2_FGFR_like Second i 99.2 3.9E-10 8.5E-15 93.3 11.7 80 515-596 5-85 (85)
186 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2.8E-10 6E-15 93.2 10.3 77 519-597 1-83 (84)
187 cd05734 Ig7_DSCAM Seventh immu 99.2 1.3E-10 2.9E-15 94.2 8.2 70 522-596 1-79 (79)
188 cd05898 Ig5_KIRREL3 Fifth immu 99.1 4E-10 8.7E-15 93.8 11.1 88 51-140 3-97 (98)
189 cd05757 Ig2_IL1R_like Second i 99.1 1.6E-10 3.5E-15 95.7 8.7 79 515-597 6-87 (92)
190 cd05727 Ig2_Contactin-2-like S 99.1 1E-10 2.2E-15 96.3 7.0 72 514-588 13-86 (96)
191 cd04979 Ig_Semaphorin_C Immuno 99.1 2.1E-10 4.5E-15 95.5 8.4 78 646-730 6-88 (89)
192 cd07690 Ig1_CD4 First immunogl 99.1 2.5E-10 5.4E-15 94.5 8.1 73 647-721 3-92 (94)
193 cd05882 Ig1_Necl-1 First (N-te 99.1 8.3E-10 1.8E-14 92.1 11.2 82 57-142 5-95 (95)
194 cd05753 Ig2_FcgammaR_like Seco 99.1 3E-10 6.4E-15 92.6 8.3 66 647-721 10-75 (83)
195 PF13895 Ig_2: Immunoglobulin 99.1 8.2E-10 1.8E-14 90.1 9.7 78 636-728 2-80 (80)
196 cd05862 Ig1_VEGFR First immuno 99.1 7.7E-10 1.7E-14 90.9 9.3 77 651-729 1-85 (86)
197 cd05871 Ig_Semaphorin_classIII 99.1 8.1E-10 1.8E-14 91.6 9.4 78 646-730 6-90 (91)
198 smart00408 IGc2 Immunoglobulin 99.1 8.4E-10 1.8E-14 85.1 8.5 63 650-718 1-63 (63)
199 cd05845 Ig2_L1-CAM_like Second 99.0 2.3E-10 5E-15 94.1 5.4 79 638-720 5-85 (95)
200 smart00410 IG_like Immunoglobu 99.0 3.1E-09 6.8E-14 87.7 12.4 81 646-728 4-85 (86)
201 smart00409 IG Immunoglobulin. 99.0 3.1E-09 6.8E-14 87.7 12.4 81 646-728 4-85 (86)
202 cd04979 Ig_Semaphorin_C Immuno 99.0 1.1E-09 2.5E-14 91.1 9.3 80 190-276 3-87 (89)
203 cd05753 Ig2_FcgammaR_like Seco 99.0 1.1E-09 2.3E-14 89.4 8.9 72 189-269 5-76 (83)
204 cd05717 Ig1_Necl-1-3_like Firs 99.0 1.6E-09 3.5E-14 91.4 10.3 81 645-728 6-95 (95)
205 TIGR00864 PCC polycystin catio 99.0 1.3E-05 2.9E-10 100.0 47.4 454 23-731 1482-1951(2740)
206 cd07690 Ig1_CD4 First immunogl 99.0 8.5E-10 1.8E-14 91.4 7.5 72 61-134 3-91 (94)
207 cd05860 Ig4_SCFR Fourth immuno 99.0 5.1E-09 1.1E-13 86.2 10.3 82 646-729 13-100 (101)
208 cd05717 Ig1_Necl-1-3_like Firs 99.0 4.3E-09 9.3E-14 88.8 9.9 83 56-142 4-95 (95)
209 cd05897 Ig2_IL1R2_like Second 99.0 2.8E-09 6E-14 88.1 8.4 76 646-723 5-84 (95)
210 cd05885 Ig2_Necl-4 Second immu 99.0 4.6E-09 1E-13 83.3 9.1 65 654-720 2-69 (80)
211 PHA03376 BARF1; Provisional 98.9 3.3E-08 7.2E-13 88.6 15.0 125 192-355 20-162 (221)
212 PHA03376 BARF1; Provisional 98.9 5.3E-08 1.1E-12 87.3 16.2 123 61-223 22-162 (221)
213 smart00409 IG Immunoglobulin. 98.9 1.2E-08 2.6E-13 84.2 11.6 83 57-142 2-85 (86)
214 smart00410 IG_like Immunoglobu 98.9 1.2E-08 2.6E-13 84.2 11.6 83 57-142 2-85 (86)
215 cd05845 Ig2_L1-CAM_like Second 98.9 1.6E-09 3.5E-14 89.1 6.0 71 514-588 13-85 (95)
216 cd05862 Ig1_VEGFR First immuno 98.9 6.9E-09 1.5E-13 85.2 9.6 77 519-597 1-85 (86)
217 cd05871 Ig_Semaphorin_classIII 98.9 8.9E-09 1.9E-13 85.4 10.2 78 192-276 5-89 (91)
218 smart00408 IGc2 Immunoglobulin 98.9 5.9E-09 1.3E-13 80.3 8.4 63 518-586 1-63 (63)
219 cd05881 Ig1_Necl-2 First (N-te 98.9 1.6E-08 3.5E-13 83.6 11.0 70 58-130 6-84 (95)
220 PF13895 Ig_2: Immunoglobulin 98.9 1.8E-08 3.8E-13 82.1 10.2 78 184-275 2-80 (80)
221 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 9.2E-09 2E-13 84.9 7.9 80 647-728 11-104 (104)
222 cd05860 Ig4_SCFR Fourth immuno 98.9 3.2E-08 6.9E-13 81.5 10.9 82 514-597 13-100 (101)
223 cd05872 Ig_Sema4B_like Immunog 98.8 1.4E-08 3E-13 81.9 8.2 75 646-728 6-80 (85)
224 cd05897 Ig2_IL1R2_like Second 98.8 1.3E-08 2.7E-13 84.2 7.8 73 61-135 6-82 (95)
225 PF00047 ig: Immunoglobulin do 98.8 9.4E-09 2E-13 79.6 6.7 62 651-713 1-64 (64)
226 cd05885 Ig2_Necl-4 Second immu 98.8 2.5E-08 5.4E-13 79.2 9.1 64 522-588 2-69 (80)
227 cd05881 Ig1_Necl-2 First (N-te 98.8 5.1E-08 1.1E-12 80.7 11.2 69 645-715 6-83 (95)
228 PF00047 ig: Immunoglobulin do 98.8 1.4E-08 3.1E-13 78.5 7.3 62 65-127 1-64 (64)
229 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 2.2E-08 4.7E-13 82.7 8.0 80 515-596 11-104 (104)
230 cd05872 Ig_Sema4B_like Immunog 98.8 3.5E-08 7.6E-13 79.5 8.3 76 515-598 7-82 (85)
231 cd05759 Ig2_KIRREL3-like Secon 98.7 5.4E-08 1.2E-12 79.5 8.9 72 654-727 2-81 (82)
232 cd05877 Ig_LP_like Immunoglobu 98.7 1.3E-07 2.9E-12 81.6 10.1 81 650-730 1-104 (106)
233 cd05713 Ig_MOG_like Immunoglob 98.7 1.7E-07 3.7E-12 79.9 10.3 78 651-728 1-99 (100)
234 cd05714 Ig_CSPGs_LP Immunoglob 98.7 1.5E-07 3.2E-12 81.3 9.8 81 650-730 1-104 (106)
235 cd05759 Ig2_KIRREL3-like Secon 98.6 1.7E-07 3.7E-12 76.6 9.2 73 67-140 1-80 (82)
236 cd05751 Ig1_LILRB1_like First 98.6 1E-07 2.3E-12 79.3 7.7 74 635-716 2-75 (91)
237 cd04983 IgV_TCR_alpha_like Imm 98.6 1.4E-07 3.1E-12 82.0 8.8 74 55-131 4-93 (109)
238 cd04983 IgV_TCR_alpha_like Imm 98.6 1.9E-07 4.1E-12 81.2 8.9 71 646-718 8-94 (109)
239 PF13927 Ig_3: Immunoglobulin 98.6 8.6E-08 1.9E-12 76.8 6.2 73 636-715 2-75 (75)
240 cd05900 Ig_Aggrecan Immunoglob 98.6 2.9E-07 6.2E-12 79.1 9.7 81 650-730 1-110 (112)
241 cd05877 Ig_LP_like Immunoglobu 98.6 4.7E-07 1E-11 78.2 11.0 81 64-144 1-104 (106)
242 cd05713 Ig_MOG_like Immunoglob 98.6 3.5E-07 7.6E-12 78.0 10.0 78 65-142 1-99 (100)
243 cd05879 Ig_P0 Immunoglobulin ( 98.6 4.5E-07 9.7E-12 78.6 10.4 84 55-139 4-111 (116)
244 cd05714 Ig_CSPGs_LP Immunoglob 98.6 7.1E-07 1.5E-11 77.0 10.9 81 64-144 1-104 (106)
245 cd05774 Ig_CEACAM_D1 First imm 98.5 6.3E-07 1.4E-11 76.0 9.7 81 189-274 4-104 (105)
246 cd05900 Ig_Aggrecan Immunoglob 98.5 5.9E-07 1.3E-11 77.2 9.5 80 64-143 1-109 (112)
247 cd05774 Ig_CEACAM_D1 First imm 98.5 5.1E-07 1.1E-11 76.6 9.0 76 61-141 9-104 (105)
248 cd05878 Ig_Aggrecan_like Immun 98.5 7.9E-07 1.7E-11 76.8 10.3 80 65-144 2-108 (110)
249 cd00099 IgV Immunoglobulin var 98.5 3.8E-07 8.3E-12 78.7 8.4 70 647-718 2-91 (105)
250 cd05879 Ig_P0 Immunoglobulin ( 98.5 7.9E-07 1.7E-11 77.1 10.2 76 190-265 5-104 (116)
251 cd05899 IgV_TCR_beta Immunoglo 98.5 3.8E-07 8.1E-12 79.3 8.0 74 54-131 3-95 (110)
252 cd05751 Ig1_LILRB1_like First 98.5 4.2E-07 9.1E-12 75.7 8.0 73 504-584 3-75 (91)
253 cd00099 IgV Immunoglobulin var 98.5 4.5E-07 9.8E-12 78.2 8.3 71 61-132 2-91 (105)
254 cd04980 IgV_L_kappa Immunoglob 98.5 5.2E-07 1.1E-11 77.8 8.0 75 53-130 4-93 (106)
255 cd05878 Ig_Aggrecan_like Immun 98.5 1.4E-06 3.1E-11 75.2 10.4 80 651-730 2-108 (110)
256 cd05718 Ig1_PVR_like First imm 98.5 1.9E-06 4.1E-11 73.2 11.0 77 652-728 1-97 (98)
257 cd05899 IgV_TCR_beta Immunoglo 98.4 7E-07 1.5E-11 77.6 8.1 70 646-718 8-96 (110)
258 cd05718 Ig1_PVR_like First imm 98.4 1.5E-06 3.3E-11 73.8 9.9 77 66-142 1-97 (98)
259 PF13927 Ig_3: Immunoglobulin 98.4 5.2E-07 1.1E-11 72.2 6.6 74 183-262 1-75 (75)
260 cd04982 IgV_TCR_gamma Immunogl 98.4 8.3E-07 1.8E-11 78.1 8.3 74 55-129 4-98 (116)
261 cd05775 Ig_SLAM-CD84_like_N N- 98.4 1.3E-06 2.8E-11 73.7 8.6 79 63-142 2-96 (97)
262 cd05883 Ig2_Necl-2 Second immu 98.4 3.4E-06 7.4E-11 67.2 10.1 76 654-730 2-81 (82)
263 cd05775 Ig_SLAM-CD84_like_N N- 98.4 1.5E-06 3.3E-11 73.2 8.6 79 649-728 2-96 (97)
264 cd04980 IgV_L_kappa Immunoglob 98.4 1.8E-06 3.9E-11 74.5 9.0 74 187-262 4-92 (106)
265 cd05880 Ig_EVA1 Immunoglobulin 98.4 1.9E-06 4.1E-11 75.2 9.0 78 54-133 3-104 (115)
266 cd05761 Ig2_Necl-1-4_like Seco 98.4 2.3E-06 5.1E-11 69.6 8.9 66 654-720 2-71 (82)
267 cd05880 Ig_EVA1 Immunoglobulin 98.4 2.2E-06 4.7E-11 74.8 9.1 73 646-719 8-104 (115)
268 cd05715 Ig_P0-like Immunoglobu 98.4 1.9E-06 4E-11 75.6 8.6 79 54-133 3-105 (116)
269 cd05711 Ig_FcalphaRI Immunoglo 98.3 1.4E-06 3E-11 72.9 7.2 72 53-128 4-75 (94)
270 cd05741 Ig_CEACAM_D1_like Firs 98.3 2E-06 4.3E-11 72.1 8.2 72 651-727 1-91 (92)
271 cd05901 Ig_Versican Immunoglob 98.3 7.1E-06 1.5E-10 70.2 11.3 79 65-143 2-114 (117)
272 cd04984 IgV_L_lambda Immunoglo 98.3 2.5E-06 5.5E-11 72.3 8.5 68 647-716 2-85 (98)
273 cd05741 Ig_CEACAM_D1_like Firs 98.3 2.1E-06 4.5E-11 72.0 7.9 63 65-132 1-81 (92)
274 cd04982 IgV_TCR_gamma Immunogl 98.3 1.9E-06 4.2E-11 75.7 8.0 69 646-716 8-99 (116)
275 KOG0613|consensus 98.3 1.1E-06 2.4E-11 101.4 7.8 229 109-397 279-517 (1205)
276 cd05883 Ig2_Necl-2 Second immu 98.3 6.8E-06 1.5E-10 65.5 9.8 76 522-598 2-81 (82)
277 cd04984 IgV_L_lambda Immunoglo 98.3 3.1E-06 6.7E-11 71.8 8.4 69 61-129 2-84 (98)
278 cd07706 IgV_TCR_delta Immunogl 98.3 3.6E-06 7.9E-11 73.9 8.6 74 54-129 4-93 (116)
279 cd05901 Ig_Versican Immunoglob 98.3 1.1E-05 2.4E-10 69.0 11.0 80 651-730 2-115 (117)
280 cd05755 Ig2_ICAM-1_like Second 98.3 4.4E-06 9.6E-11 69.5 8.2 71 61-133 12-87 (100)
281 cd05761 Ig2_Necl-1-4_like Seco 98.3 5.8E-06 1.3E-10 67.2 8.8 65 522-587 2-70 (82)
282 cd05902 Ig_Neurocan Immunoglob 98.2 9.6E-06 2.1E-10 69.4 10.4 79 65-143 2-107 (110)
283 cd07705 Ig2_Necl-1 Second immu 98.2 8.5E-06 1.8E-10 66.2 9.6 66 654-720 2-72 (83)
284 cd05888 Ig1_Nectin-4_like Frst 98.2 1.1E-05 2.5E-10 68.3 10.7 76 653-728 2-99 (100)
285 PF07686 V-set: Immunoglobulin 98.2 1.1E-05 2.5E-10 70.5 10.7 83 645-728 10-114 (114)
286 cd05888 Ig1_Nectin-4_like Frst 98.2 1.2E-05 2.6E-10 68.2 10.0 77 66-142 1-99 (100)
287 cd05711 Ig_FcalphaRI Immunoglo 98.2 6E-06 1.3E-10 69.0 7.9 74 636-714 2-75 (94)
288 PHA02987 Ig domain OX-2-like p 98.2 9.5E-06 2.1E-10 74.0 9.5 84 61-145 26-124 (189)
289 cd05846 Ig1_MRC-OX-2_like Firs 98.2 7.2E-06 1.6E-10 69.3 8.4 77 198-275 1-96 (97)
290 cd05715 Ig_P0-like Immunoglobu 98.2 8.7E-06 1.9E-10 71.4 9.2 77 189-265 4-104 (116)
291 cd05755 Ig2_ICAM-1_like Second 98.2 8.6E-06 1.9E-10 67.8 8.5 71 646-719 11-87 (100)
292 cd00098 IgC Immunoglobulin Con 98.2 5.2E-06 1.1E-10 70.0 7.2 71 63-133 11-87 (95)
293 cd05886 Ig1_Nectin-1_like Firs 98.2 1.5E-05 3.2E-10 66.9 9.8 75 653-728 2-98 (99)
294 PF07686 V-set: Immunoglobulin 98.2 2.4E-05 5.2E-10 68.5 11.7 88 187-275 5-114 (114)
295 cd07705 Ig2_Necl-1 Second immu 98.2 1.5E-05 3.2E-10 64.8 9.4 65 522-587 2-71 (83)
296 cd00098 IgC Immunoglobulin Con 98.2 4E-06 8.6E-11 70.7 6.3 69 649-719 11-87 (95)
297 cd05846 Ig1_MRC-OX-2_like Firs 98.2 7.9E-06 1.7E-10 69.0 7.9 77 65-142 1-96 (97)
298 cd05902 Ig_Neurocan Immunoglob 98.2 2E-05 4.3E-10 67.5 10.3 80 651-730 2-108 (110)
299 cd05716 Ig_pIgR Immunoglobulin 98.1 7.2E-06 1.6E-10 69.5 7.6 69 61-130 3-86 (98)
300 cd05886 Ig1_Nectin-1_like Firs 98.1 2.8E-05 6E-10 65.3 10.6 76 67-143 2-99 (99)
301 cd05887 Ig1_Nectin-3_like Firs 98.1 2E-05 4.3E-10 65.5 9.6 76 199-275 1-95 (96)
302 cd07694 Ig2_CD4 Second immunog 98.1 2.8E-05 6.1E-10 61.7 9.2 77 647-729 10-86 (88)
303 cd07694 Ig2_CD4 Second immunog 98.1 2.8E-05 6E-10 61.7 9.1 77 61-143 10-86 (88)
304 PHA02987 Ig domain OX-2-like p 98.1 2.1E-05 4.5E-10 71.8 9.5 87 191-278 23-124 (189)
305 cd05887 Ig1_Nectin-3_like Firs 98.1 2.5E-05 5.5E-10 64.8 9.3 76 66-142 1-95 (96)
306 cd07706 IgV_TCR_delta Immunogl 98.1 2.1E-05 4.7E-10 69.0 9.5 75 187-262 3-93 (116)
307 cd05712 Ig_Siglec_N Immunoglob 98.1 1.3E-05 2.8E-10 70.6 7.8 77 53-130 3-102 (119)
308 cd05884 Ig2_Necl-3 Second immu 98.1 2.2E-05 4.8E-10 63.6 8.3 65 654-719 2-71 (83)
309 KOG0613|consensus 98.0 3.2E-05 7E-10 89.7 12.1 279 322-720 236-519 (1205)
310 cd05716 Ig_pIgR Immunoglobulin 98.0 2.3E-05 4.9E-10 66.4 8.3 70 647-717 3-87 (98)
311 cd05720 Ig_CD8_alpha Immunoglo 98.0 2.4E-05 5.2E-10 66.9 7.6 67 61-129 2-90 (104)
312 cd04981 IgV_H Immunoglobulin ( 98.0 3.9E-05 8.5E-10 67.1 9.0 74 55-129 3-97 (117)
313 cd05884 Ig2_Necl-3 Second immu 98.0 3.6E-05 7.8E-10 62.4 8.1 64 522-586 2-70 (83)
314 PHA03269 envelope glycoprotein 97.9 0.0012 2.5E-08 68.7 20.1 83 106-228 287-373 (566)
315 cd07700 IgV_CD8_beta Immunoglo 97.9 2.8E-05 6E-10 67.0 7.4 68 61-129 2-93 (107)
316 cd05720 Ig_CD8_alpha Immunoglo 97.9 3.7E-05 8E-10 65.8 7.7 67 647-715 2-90 (104)
317 PHA03270 envelope glycoprotein 97.9 0.011 2.4E-07 61.0 26.0 128 192-360 136-265 (466)
318 cd05772 IgC_SIRP Signal-regula 97.9 0.00013 2.8E-09 62.7 10.6 72 61-133 17-94 (111)
319 PHA03269 envelope glycoprotein 97.9 0.0015 3.2E-08 67.9 19.7 82 241-360 289-373 (566)
320 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00011 2.3E-09 61.4 9.6 79 183-264 2-83 (93)
321 cd05712 Ig_Siglec_N Immunoglob 97.9 7.1E-05 1.5E-09 65.9 8.9 75 189-263 5-102 (119)
322 cd00096 Ig Immunoglobulin doma 97.9 6.1E-05 1.3E-09 58.9 7.8 64 654-719 1-68 (74)
323 cd05766 IgC_MHC_II_beta Class 97.9 0.00015 3.2E-09 60.4 9.9 71 62-132 11-84 (94)
324 PHA03270 envelope glycoprotein 97.8 0.0026 5.6E-08 65.4 20.2 82 109-228 183-265 (466)
325 cd07700 IgV_CD8_beta Immunoglo 97.8 5.4E-05 1.2E-09 65.2 7.3 67 647-715 2-93 (107)
326 KOG1480|consensus 97.8 6.9E-06 1.5E-10 89.2 2.0 185 182-409 23-220 (909)
327 PHA03273 envelope glycoprotein 97.8 0.0025 5.4E-08 66.3 20.0 116 241-394 198-323 (486)
328 PHA03273 envelope glycoprotein 97.8 0.0037 8E-08 65.0 20.6 117 108-262 198-323 (486)
329 cd05772 IgC_SIRP Signal-regula 97.8 0.0003 6.5E-09 60.5 10.7 69 647-717 17-92 (111)
330 cd05766 IgC_MHC_II_beta Class 97.7 0.00027 5.9E-09 58.8 9.8 69 196-264 12-83 (94)
331 smart00406 IGv Immunoglobulin 97.7 0.00011 2.4E-09 59.6 7.4 61 67-127 1-81 (81)
332 cd00096 Ig Immunoglobulin doma 97.7 0.00021 4.5E-09 55.7 8.1 62 522-585 1-66 (74)
333 cd05770 IgC_beta2m Class I maj 97.7 0.00041 8.8E-09 57.4 9.8 69 62-131 12-83 (93)
334 cd05770 IgC_beta2m Class I maj 97.7 0.00045 9.8E-09 57.1 10.0 68 195-263 12-82 (93)
335 cd07698 IgC_MHC_I_alpha3 Class 97.7 0.00039 8.5E-09 58.0 9.8 66 651-718 14-84 (93)
336 cd07699 IgC_L Immunoglobulin C 97.7 0.00014 3E-09 61.5 7.2 71 61-131 13-89 (100)
337 smart00407 IGc1 Immunoglobulin 97.7 0.00026 5.6E-09 56.4 8.2 65 67-131 1-71 (75)
338 cd05767 IgC_MHC_II_alpha Class 97.7 0.00035 7.7E-09 57.9 9.2 65 196-263 13-83 (94)
339 cd05889 Ig1_DNAM-1_like First 97.7 0.00041 8.9E-09 57.7 9.6 73 199-272 1-92 (96)
340 cd05889 Ig1_DNAM-1_like First 97.6 0.00048 1E-08 57.3 9.7 74 66-140 1-93 (96)
341 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00043 9.3E-09 57.8 9.3 72 61-132 10-87 (96)
342 cd05847 IgC_CH2_IgE CH2 domain 97.6 0.00032 6.9E-09 58.3 8.4 73 61-133 10-88 (94)
343 cd05769 IgC_TCR_beta T cell re 97.6 0.00035 7.5E-09 60.2 8.8 83 55-138 9-99 (115)
344 KOG1480|consensus 97.6 2E-05 4.4E-10 85.7 1.4 186 502-731 23-221 (909)
345 cd05768 IgC_CH4 CH4 domain (fo 97.6 0.00023 5E-09 60.2 7.6 77 54-131 6-91 (102)
346 cd04981 IgV_H Immunoglobulin ( 97.6 0.00028 6E-09 61.8 8.3 74 189-262 3-97 (117)
347 PF08205 C2-set_2: CD80-like C 97.6 0.0005 1.1E-08 56.9 9.5 69 651-720 14-87 (89)
348 smart00406 IGv Immunoglobulin 97.6 0.00028 6E-09 57.2 7.5 60 653-712 1-80 (81)
349 cd05847 IgC_CH2_IgE CH2 domain 97.6 0.00052 1.1E-08 57.0 9.0 77 190-266 6-88 (94)
350 PF07654 C1-set: Immunoglobuli 97.6 0.00049 1.1E-08 56.0 8.7 71 63-133 6-79 (83)
351 cd05767 IgC_MHC_II_alpha Class 97.6 0.00056 1.2E-08 56.8 9.0 66 63-131 13-84 (94)
352 cd07699 IgC_L Immunoglobulin C 97.6 0.00049 1.1E-08 58.2 8.8 81 636-717 2-89 (100)
353 PHA03271 envelope glycoprotein 97.5 0.033 7.1E-07 57.2 22.6 82 241-361 207-292 (490)
354 PF08205 C2-set_2: CD80-like C 97.5 0.00063 1.4E-08 56.3 9.1 67 198-265 14-85 (89)
355 smart00407 IGc1 Immunoglobulin 97.5 0.00063 1.4E-08 54.1 8.6 64 200-263 1-70 (75)
356 PHA03271 envelope glycoprotein 97.5 0.017 3.8E-07 59.1 20.3 84 106-228 205-291 (490)
357 cd07697 IgC_TCR_gamma T cell r 97.5 0.00042 9E-09 57.6 7.6 72 56-130 8-84 (96)
358 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00034 7.3E-09 52.1 6.1 51 650-716 6-56 (65)
359 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.00054 1.2E-08 58.0 7.6 72 192-263 10-90 (102)
360 cd05769 IgC_TCR_beta T cell re 97.4 0.00082 1.8E-08 57.9 8.5 85 184-268 3-96 (115)
361 cd07696 IgC_CH3 CH3 domain (th 97.3 0.00096 2.1E-08 55.7 8.0 76 189-264 5-86 (96)
362 PHA02914 Immunoglobulin-like d 97.3 0.27 5.7E-06 50.4 28.7 85 324-408 273-381 (500)
363 cd05721 IgV_CTLA-4 Immunoglobu 97.3 0.0012 2.7E-08 55.8 8.0 72 55-128 4-94 (115)
364 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00046 9.9E-09 51.4 4.5 52 517-584 5-56 (65)
365 PF07654 C1-set: Immunoglobuli 97.3 0.0011 2.4E-08 54.0 7.3 68 197-264 7-77 (83)
366 cd07697 IgC_TCR_gamma T cell r 97.2 0.0011 2.5E-08 55.0 7.2 67 646-715 11-83 (96)
367 cd05721 IgV_CTLA-4 Immunoglobu 97.2 0.0031 6.6E-08 53.5 9.0 72 189-261 4-94 (115)
368 cd05719 Ig2_PVR_like Second im 97.1 0.0031 6.8E-08 52.5 8.6 73 651-727 15-94 (95)
369 PHA02982 hypothetical protein; 97.0 0.017 3.6E-07 53.4 12.8 81 61-142 35-135 (251)
370 cd04985 IgC_CH1 CH1 domain (fi 97.0 0.0041 8.8E-08 51.8 8.4 67 197-264 15-87 (95)
371 cd05719 Ig2_PVR_like Second im 97.0 0.0049 1.1E-07 51.3 8.5 68 520-591 16-88 (95)
372 cd04986 IgC_CH2 CH2 domain (se 96.9 0.0025 5.4E-08 53.0 6.1 76 188-264 9-89 (99)
373 cd07703 Ig2_Nectin-2_like Seco 96.9 0.0062 1.3E-07 50.6 8.3 73 652-726 16-91 (95)
374 cd07691 Ig_CD3_gamma_delta Imm 96.9 0.0021 4.6E-08 48.2 4.9 59 651-729 6-64 (69)
375 cd04985 IgC_CH1 CH1 domain (fi 96.9 0.0062 1.3E-07 50.7 8.3 67 64-131 15-87 (95)
376 cd07703 Ig2_Nectin-2_like Seco 96.8 0.0062 1.4E-07 50.5 8.1 74 520-595 16-92 (95)
377 cd04986 IgC_CH2 CH2 domain (se 96.8 0.0036 7.8E-08 52.1 6.4 76 54-132 9-90 (99)
378 cd07691 Ig_CD3_gamma_delta Imm 96.8 0.0028 6.1E-08 47.6 5.0 60 519-598 6-65 (69)
379 PF08204 V-set_CD47: CD47 immu 96.8 0.001 2.2E-08 57.7 3.0 82 648-730 24-121 (130)
380 PHA02633 hypothetical protein; 96.7 0.0033 7.1E-08 45.9 4.5 37 109-145 19-55 (63)
381 cd07704 Ig2_Nectin-3-4_like Se 96.5 0.011 2.4E-07 48.9 7.4 74 60-135 11-88 (97)
382 PF08204 V-set_CD47: CD47 immu 96.5 0.0028 6.1E-08 55.0 4.0 81 62-143 24-120 (130)
383 cd07689 Ig2_VCAM-1 Second immu 96.5 0.0098 2.1E-07 48.8 6.7 67 61-130 11-85 (99)
384 PHA02633 hypothetical protein; 96.4 0.011 2.4E-07 43.3 5.9 38 563-600 19-56 (63)
385 cd07704 Ig2_Nectin-3-4_like Se 96.4 0.016 3.5E-07 47.9 7.8 69 515-586 12-85 (97)
386 PHA02982 hypothetical protein; 96.2 0.1 2.2E-06 48.4 12.2 84 324-408 33-136 (251)
387 cd07689 Ig2_VCAM-1 Second immu 96.1 0.025 5.3E-07 46.5 7.2 66 516-584 12-85 (99)
388 PHA03042 CD47-like protein; Pr 95.7 0.051 1.1E-06 52.8 8.5 71 649-729 29-105 (286)
389 KOG4597|consensus 95.7 0.021 4.6E-07 59.4 6.1 82 646-729 206-292 (560)
390 PHA02914 Immunoglobulin-like d 95.7 3.2 6.9E-05 42.9 32.9 161 515-718 275-468 (500)
391 PF07354 Sp38: Zona-pellucida- 94.7 0.04 8.6E-07 53.4 4.3 49 666-717 11-60 (271)
392 PF07354 Sp38: Zona-pellucida- 94.5 0.051 1.1E-06 52.7 4.6 49 80-131 11-60 (271)
393 KOG4597|consensus 94.4 0.052 1.1E-06 56.7 4.7 92 184-277 197-293 (560)
394 PF02124 Marek_A: Marek's dise 94.3 3.6 7.8E-05 39.3 16.2 51 80-130 5-62 (211)
395 PF02124 Marek_A: Marek's dise 94.0 3.2 7E-05 39.6 15.4 56 524-583 94-159 (211)
396 PF11465 Receptor_2B4: Natural 94.0 0.36 7.8E-06 40.0 7.9 71 656-728 30-106 (108)
397 PHA03283 envelope glycoprotein 94.0 1.2 2.6E-05 47.8 13.7 96 563-674 135-233 (542)
398 PHA03042 CD47-like protein; Pr 93.5 0.38 8.1E-06 47.0 8.3 72 65-143 31-105 (286)
399 PF06328 Lep_receptor_Ig: Ig-l 93.2 0.56 1.2E-05 38.3 7.8 70 189-260 9-81 (89)
400 KOG1026|consensus 92.7 0.051 1.1E-06 61.6 1.4 291 61-411 63-366 (774)
401 PF11465 Receptor_2B4: Natural 92.5 0.27 5.8E-06 40.8 5.0 71 521-596 29-104 (108)
402 PHA03283 envelope glycoprotein 92.5 6.3 0.00014 42.6 16.3 95 108-221 134-233 (542)
403 PF06328 Lep_receptor_Ig: Ig-l 92.5 0.47 1E-05 38.8 6.5 69 56-127 10-81 (89)
404 PHA03282 envelope glycoprotein 92.4 11 0.00023 40.2 17.4 31 692-722 331-362 (540)
405 PF05790 C2-set: Immunoglobuli 92.3 0.82 1.8E-05 36.5 7.5 52 667-728 26-78 (80)
406 PHA02865 MHC-like TNF binding 92.0 0.43 9.3E-06 48.9 6.9 64 67-130 216-303 (338)
407 KOG1026|consensus 91.8 0.23 4.9E-06 56.5 5.2 164 515-732 203-366 (774)
408 PHA03282 envelope glycoprotein 91.5 10 0.00022 40.3 16.1 22 241-262 333-354 (540)
409 PRK14081 triple tyrosine motif 90.8 35 0.00077 39.0 40.7 143 195-393 302-455 (667)
410 PHA02865 MHC-like TNF binding 90.1 1.2 2.5E-05 45.9 7.9 38 181-222 201-238 (338)
411 PF05790 C2-set: Immunoglobuli 89.4 2.3 5E-05 33.9 7.6 53 535-597 26-79 (80)
412 PHA03286 envelope glycoprotein 89.3 33 0.00072 36.5 17.5 94 563-674 128-225 (492)
413 PF06832 BiPBP_C: Penicillin-B 88.0 5.1 0.00011 32.8 9.1 56 653-722 31-86 (89)
414 PHA03281 envelope glycoprotein 88.0 10 0.00022 41.1 13.1 92 563-674 299-394 (642)
415 PF06582 DUF1136: Repeat of un 86.9 0.23 5.1E-06 30.3 0.4 22 602-623 1-22 (28)
416 PF02480 Herpes_gE: Alphaherpe 86.6 0.66 1.4E-05 50.4 3.8 95 563-674 90-189 (439)
417 PF02480 Herpes_gE: Alphaherpe 86.5 2.9 6.3E-05 45.5 8.7 93 109-221 90-189 (439)
418 PF06832 BiPBP_C: Penicillin-B 86.0 8.7 0.00019 31.4 9.4 76 501-590 8-86 (89)
419 PRK14081 triple tyrosine motif 85.0 79 0.0017 36.3 40.3 164 515-735 397-578 (667)
420 PF03921 ICAM_N: Intercellular 84.8 17 0.00038 29.7 10.2 82 186-279 6-89 (91)
421 PHA03281 envelope glycoprotein 81.3 37 0.00081 37.0 13.6 91 109-221 299-394 (642)
422 PHA03189 UL14 tegument protein 81.3 15 0.00032 36.8 10.0 82 644-726 60-166 (348)
423 PF06582 DUF1136: Repeat of un 81.2 0.9 2E-05 27.8 1.2 24 281-304 1-24 (28)
424 PHA03052 Hypothetical protein; 80.9 3.9 8.5E-05 30.7 4.6 36 191-226 5-41 (69)
425 PHA03052 Hypothetical protein; 80.3 5.3 0.00011 30.1 5.1 38 56-94 4-42 (69)
426 PHA03189 UL14 tegument protein 74.4 27 0.00059 35.0 9.6 74 190-264 59-156 (348)
427 smart00089 PKD Repeats in poly 73.5 42 0.00092 26.3 9.5 65 648-728 11-78 (79)
428 PHA03286 envelope glycoprotein 71.8 50 0.0011 35.3 11.4 36 109-144 128-164 (492)
429 PHA03112 IL-18 binding protein 71.2 15 0.00033 32.5 6.5 71 61-132 34-120 (141)
430 PF02440 Adeno_E3_CR1: Adenovi 69.6 7.3 0.00016 29.3 3.6 54 648-707 2-63 (63)
431 KOG0200|consensus 69.5 13 0.00029 43.0 7.7 39 691-729 114-152 (609)
432 KOG0200|consensus 68.4 57 0.0012 37.8 12.6 25 559-583 114-138 (609)
433 PF00801 PKD: PKD domain; Int 68.2 27 0.00058 26.7 6.9 60 646-721 6-68 (69)
434 PF11141 DUF2914: Protein of u 66.1 44 0.00096 25.5 7.4 60 667-728 6-65 (66)
435 PHA03240 envelope glycoprotein 63.3 9 0.00019 36.0 3.7 65 61-127 34-124 (258)
436 PF02010 REJ: REJ domain; Int 60.4 12 0.00026 41.5 4.9 93 648-741 205-310 (440)
437 PHA03112 IL-18 binding protein 60.4 35 0.00076 30.3 6.6 70 516-586 35-120 (141)
438 PF11141 DUF2914: Protein of u 59.8 76 0.0017 24.2 8.3 54 81-142 6-65 (66)
439 cd05890 Ig2_Nectin-1_like Seco 57.2 43 0.00093 27.5 6.1 69 521-595 22-97 (98)
440 PF00801 PKD: PKD domain; Int 55.4 47 0.001 25.4 6.1 29 193-223 6-34 (69)
441 PHA03240 envelope glycoprotein 55.4 24 0.00052 33.3 5.0 81 646-729 33-144 (258)
442 PF02440 Adeno_E3_CR1: Adenovi 54.7 24 0.00052 26.6 4.0 21 516-542 2-22 (63)
443 PF02010 REJ: REJ domain; Int 53.4 21 0.00046 39.5 5.4 84 327-411 205-301 (440)
444 PF07705 CARDB: CARDB; InterP 50.2 62 0.0013 26.7 6.7 35 645-679 12-49 (101)
445 cd05890 Ig2_Nectin-1_like Seco 43.6 51 0.0011 27.1 4.6 68 67-140 22-96 (98)
446 PF07705 CARDB: CARDB; InterP 38.7 1.3E+02 0.0029 24.6 7.0 66 61-128 14-82 (101)
447 PF03921 ICAM_N: Intercellular 36.9 2.4E+02 0.0052 23.2 11.1 80 321-411 9-89 (91)
448 smart00089 PKD Repeats in poly 36.8 2E+02 0.0044 22.3 9.6 66 195-275 11-78 (79)
449 cd00146 PKD polycystic kidney 36.5 2.1E+02 0.0045 22.4 8.9 65 651-728 14-81 (81)
450 PF11049 KSHV_K1: Glycoprotein 32.2 64 0.0014 24.3 3.1 44 202-262 2-45 (71)
451 PF01688 Herpes_gI: Alphaherpe 29.3 98 0.0021 28.4 4.6 23 108-130 124-146 (161)
452 PF12988 DUF3872: Domain of un 25.8 4.7E+02 0.01 23.2 9.9 40 48-88 31-73 (137)
453 PF01688 Herpes_gI: Alphaherpe 20.5 1.7E+02 0.0038 26.9 4.5 34 563-596 125-158 (161)
No 1
>KOG3513|consensus
Probab=100.00 E-value=4.3e-60 Score=523.85 Aligned_cols=503 Identities=23% Similarity=0.343 Sum_probs=396.7
Q ss_pred Cccccc-cccccceeeeccCCCchhhhhhh-ccCCccceee-cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCE
Q psy2145 15 PYLSSK-KETSYHWQNVPVPEWSKEQENAK-KKKNFIYYTV-TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGR 91 (808)
Q Consensus 15 ~~~~~~-~ed~g~y~c~~~~~~~~~~~~~~-~~~~~~~~~~-~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~ 91 (808)
.+.... ..|.|.|+|.|.|..+...+... +...++..+- .....+ .+.+|+.+.|.|.... +.|.+.+.|+.+..
T Consensus 99 vI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v-~v~eG~~~~L~C~pP~-~~P~l~~~W~~~~~ 176 (1051)
T KOG3513|consen 99 VITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPV-EVEEGDGVVLPCNPPA-HFPPLRYYWMLNEF 176 (1051)
T ss_pred EecCCcchhhcceeEEEeecccceeeccceeecccccccCccccCCcE-EEEeCCceEEeCCCCC-CCCCccEEehhccC
Confidence 344455 77999999999999988865433 4455555554 444555 9999999999999876 67889999998664
Q ss_pred Ee-ec--cCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcc---eEEEEEEEEecCCCccccccccccceeeeeec
Q psy2145 92 PV-TI--GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF---AEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165 (808)
Q Consensus 92 ~l-~~--~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (808)
+- .. +.|+....++ .|.|.++..+|.+.|.|.|.+..-. ....+.|++.....
T Consensus 177 ~~~~~~~~~r~~~~~~G---~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~------------------ 235 (1051)
T KOG3513|consen 177 PHFVQIDNRRVFSQENG---NLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNV------------------ 235 (1051)
T ss_pred CcccccCcceeEecccc---eEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccccc------------------
Confidence 32 22 2344433333 6999999999999999999873221 12234444421110
Q ss_pred cccccccccccccccCCCCeEEeec-CceeecCCCeEEEEEEEeecCCCCeEEEEeeCCE-EccCCCceEEEecCceEEE
Q psy2145 166 DKSKYQRGEYIEETTTQAPIFTTSL-KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV-PIKSGSRFTETNNFGFVAL 243 (808)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~-~l~~~~~~~~~~~~~~~~L 243 (808)
+...+|.|.... +......|+.|.|+|.+ .|+|.|+|.|+|.|. ++... ....+.+. +|
T Consensus 236 -------------~~~~~P~i~~~~p~~~~a~~G~~v~LECfA--~G~P~P~i~W~k~~g~~~~~r--~~~~~~~~--vL 296 (1051)
T KOG3513|consen 236 -------------MREYAPKILVPFPETETALKGQSVKLECFA--LGNPTPQIKWRKVDGKPPPRR--ATYSNYGK--VL 296 (1051)
T ss_pred -------------ccccCCccccCCCCcccccCCCeEEEEEEe--cCCCCCcEEEEeCCCCCCCcc--eeeecccc--EE
Confidence 114566665554 46778899999999999 799999999999766 44432 22223223 89
Q ss_pred EEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCC
Q psy2145 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR 323 (808)
Q Consensus 244 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~ 323 (808)
.|.+++.+|+|.|+|.|+|..|.......|.|.. +|.++..+.
T Consensus 297 ~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a-------------------------------------~P~w~~~~~ 339 (1051)
T KOG3513|consen 297 KIPNVQYEDAGEYECIAENSRGSATHSGHVTVYA-------------------------------------PPYWLQKPQ 339 (1051)
T ss_pred EecccCcCCCeEEEEEEecccccceeeEEEEEec-------------------------------------Cchhhcccc
Confidence 9999999999999999999999888888888875 778888999
Q ss_pred ceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCc---EEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR---VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV 400 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~ 400 (808)
+..+..|+.+.|+|.+ .|.|.|+|+|++||.+|...++ +.+..+ +|+|.++...|+|.|.|.|+|.+|...
T Consensus 340 d~~~~~gs~v~~eC~a--~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQC~A~Nk~G~i~ 413 (1051)
T KOG3513|consen 340 DTEADTGSNVTLECKA--SGKPNPTVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQCIAENKYGTIY 413 (1051)
T ss_pred eeEecCCCCeEEEEEe--cCCCCCceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEEeeeecccceEe
Confidence 9999999999999999 8999999999999999997766 555443 799999999999999999999999999
Q ss_pred EEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhh
Q psy2145 401 TSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEK 480 (808)
Q Consensus 401 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (808)
+++.|+|....
T Consensus 414 anA~L~V~a~~--------------------------------------------------------------------- 424 (1051)
T KOG3513|consen 414 ANAELKVLASA--------------------------------------------------------------------- 424 (1051)
T ss_pred eeeEEEEEccC---------------------------------------------------------------------
Confidence 99999998652
Q ss_pred hcccccCCCCCCCCcCCCCccCCCeeee-cCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC
Q psy2145 481 IRKLEDTEPHKRPEVDDNATKQRPVFTK-PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559 (808)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~P~f~~-~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~ 559 (808)
|.|.. ++.....+..|.++.|.|.. .+.|.|.++|.|+++.+..+.|+.+..++
T Consensus 425 -----------------------P~f~~~p~~~~~~a~~g~~v~i~C~~--~asP~p~~~W~k~~~~~~~~~r~~i~edG 479 (1051)
T KOG3513|consen 425 -----------------------PVFPLNPVERKVMAVVGGTVTIDCKP--FASPKPKVSWLKGGEKLLQSGRIRILEDG 479 (1051)
T ss_pred -----------------------CCCCCCccceEEEEEeCCeEEEeecc--CCCCcceEEEEcCCcccccCceEEECCCC
Confidence 22222 12222346789999999998 89999999999999988888999888776
Q ss_pred cEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEE
Q psy2145 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFT 639 (808)
Q Consensus 560 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~ 639 (808)
+|.|.+++.+|+|.|+|.|.|..|.+...++|.|+.. ++|+
T Consensus 480 ---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~------------------------------------tri~ 520 (1051)
T KOG3513|consen 480 ---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDA------------------------------------TRIT 520 (1051)
T ss_pred ---cEEecccCcccCcEEEEEEEcccCccceEEEEEEecC------------------------------------ceEE
Confidence 6999999999999999999999999999999999975 4445
Q ss_pred eecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC---CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 640 QLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM---GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 640 ~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
..+. ...+..|+.+.|.|++...-.....|.|.+||..+.. +.++......+...|+|.++...|+|.|+|+|.-.
T Consensus 521 ~~P~-~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~ 599 (1051)
T KOG3513|consen 521 LAPS-NTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTA 599 (1051)
T ss_pred eccc-hhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEe
Confidence 5333 3578999999999999433334567899999998763 44555544333357999999999999999999999
Q ss_pred CcceEEEEEEEEEeCCCccc
Q psy2145 717 AGEAVSSTSLKVKSKSDIVS 736 (808)
Q Consensus 717 ~G~~~~s~~l~V~~~p~~~~ 736 (808)
.-+++..+.|.|+++|+-+.
T Consensus 600 ~Ds~s~~A~l~V~gpPgpP~ 619 (1051)
T KOG3513|consen 600 LDSASARADLLVRGPPGPPP 619 (1051)
T ss_pred ecchhcccceEEecCCCCCC
Confidence 99999999999999987655
No 2
>KOG3513|consensus
Probab=100.00 E-value=9.8e-56 Score=489.30 Aligned_cols=469 Identities=25% Similarity=0.393 Sum_probs=359.5
Q ss_pred ceeecCCCCccccCCCC--cEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccC-cCCCeeEEEE
Q psy2145 50 YYTVTKPKSIENLRERG--HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI-PEDSGTYTCR 126 (808)
Q Consensus 50 ~~~~~~p~~~~~v~~G~--~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~ 126 (808)
|.++.+|.++.....-+ .+.|.|.+. |+|.+++.|+|||..+...........+| +|.|.+.. ..|.|.|+|.
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~--G~P~Psy~W~kng~~~d~~~~~~~~~~~G--~lvI~~p~~~~d~G~YqC~ 115 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEAN--GNPEPSYRWTKNGTEFDPTEYPRVSVLGG--TLVITNPDAALDQGIYQCF 115 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEec--CCCCceeEEEECCeecccccccceeeecC--ceEecCCcchhhcceeEEE
Confidence 66666666552222223 499999999 68999999999999877544222222244 58888877 8899999999
Q ss_pred EEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE-eecCceeecCCCeEEEE
Q psy2145 127 AVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT-TSLKNCEIKEGQRAHFE 204 (808)
Q Consensus 127 a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~~v~~G~~v~L~ 204 (808)
|+|..|.+.+ .+.|.. ...+.|. .....+.+.+|+.+.|.
T Consensus 116 AsN~~Gta~S~~~~l~~--------------------------------------~~i~~F~~e~~~~v~v~eG~~~~L~ 157 (1051)
T KOG3513|consen 116 ASNKLGTAVSREARLQF--------------------------------------GFIPKFKKEERSPVEVEEGDGVVLP 157 (1051)
T ss_pred eecccceeeccceeecc--------------------------------------cccccCccccCCcEEEEeCCceEEe
Confidence 9999997644 333332 2223333 34556889999999999
Q ss_pred EEEeecCCCCeEEEEeeCCEEc-cC--CCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEE---EEEEEEEeeC
Q psy2145 205 CRLIPVSDNTMKVEWFHNNVPI-KS--GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAV---TSGNLLVHSK 278 (808)
Q Consensus 205 C~~~~~~~p~~~v~W~~~g~~l-~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~~~ 278 (808)
|..- .+.|.+.+.|..+..+- .. +.|+.... .| .|-+.++..+|.+.|.|.|.+..-... ..+.|.+...
T Consensus 158 C~pP-~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~-~G--~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~ 233 (1051)
T KOG3513|consen 158 CNPP-AHFPPLRYYWMLNEFPHFVQIDNRRVFSQE-NG--NLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSN 233 (1051)
T ss_pred CCCC-CCCCCccEEehhccCCcccccCcceeEecc-cc--eEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccc
Confidence 9874 68888999999866542 22 22443333 34 799999999999999999998332221 1234444211
Q ss_pred CcccccccccchhhhhhhhhccccccccccccccCCCCeeccCC-CceEeecCCeEEEEEEEeecCCCccEEEEEECCEe
Q psy2145 279 KSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM-RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357 (808)
Q Consensus 279 ~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~-~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~ 357 (808)
.. ....+|.+..+. .......|+.+.|+|.+ .|+|.|+|.|+|.|..
T Consensus 234 ~~------------------------------~~~~~P~i~~~~p~~~~a~~G~~v~LECfA--~G~P~P~i~W~k~~g~ 281 (1051)
T KOG3513|consen 234 NV------------------------------MREYAPKILVPFPETETALKGQSVKLECFA--LGNPTPQIKWRKVDGK 281 (1051)
T ss_pred cc------------------------------ccccCCccccCCCCcccccCCCeEEEEEEe--cCCCCCcEEEEeCCCC
Confidence 10 112466665443 35677899999999999 8999999999997764
Q ss_pred ccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhcccccccccc
Q psy2145 358 IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKR 437 (808)
Q Consensus 358 l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (808)
. ...+....+.+. +|.|.++..+|+|.|.|.|.|..|.......|+|..+
T Consensus 282 ~-~~~r~~~~~~~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~--------------------------- 331 (1051)
T KOG3513|consen 282 P-PPRRATYSNYGK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAP--------------------------- 331 (1051)
T ss_pred C-CCcceeeecccc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEecC---------------------------
Confidence 2 223333333333 7999999999999999999999998888899998864
Q ss_pred ccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCccccc
Q psy2145 438 KEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVE 517 (808)
Q Consensus 438 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~ 517 (808)
|.++..+++. .+.
T Consensus 332 ------------------------------------------------------------------P~w~~~~~d~-~~~ 344 (1051)
T KOG3513|consen 332 ------------------------------------------------------------------PYWLQKPQDT-EAD 344 (1051)
T ss_pred ------------------------------------------------------------------chhhccccee-Eec
Confidence 4455555555 578
Q ss_pred CCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCC---eEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR---ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 518 ~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
.|+++.|.|++ .|.|.|+|+|+|||.+|....+ +.+.. | .|.|.++...|+|.|.|.|+|.+|...+++.|
T Consensus 345 ~gs~v~~eC~a--~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~--g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L 418 (1051)
T KOG3513|consen 345 TGSNVTLECKA--SGKPNPTVKWLKNGEPLEPAERDPRYKIDD--G--TLIISNVQESDSGVYQCIAENKYGTIYANAEL 418 (1051)
T ss_pred CCCCeEEEEEe--cCCCCCceEEeeCCeecCccCCCcceEEeC--C--EEEEEecccccCeEEEeeeecccceEeeeeEE
Confidence 89999999999 8999999999999999997766 55543 3 79999999999999999999999999999999
Q ss_pred EEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCC-ccccCCceEEEEEEEeeCCCCCeEEEEE
Q psy2145 595 KIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGT-SEIMEGQSAHYDCRVVPVGDPTMRFEWF 673 (808)
Q Consensus 595 ~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~-~~v~~G~~v~l~C~v~~~g~P~p~i~W~ 673 (808)
.|...+ |.|...+... ..+..|..+.|.|.. .+.|.|.++|.
T Consensus 419 ~V~a~~-----------------------------------P~f~~~p~~~~~~a~~g~~v~i~C~~--~asP~p~~~W~ 461 (1051)
T KOG3513|consen 419 KVLASA-----------------------------------PVFPLNPVERKVMAVVGGTVTIDCKP--FASPKPKVSWL 461 (1051)
T ss_pred EEEccC-----------------------------------CCCCCCccceEEEEEeCCeEEEeecc--CCCCcceEEEE
Confidence 999753 4343333222 347789999999998 89999999999
Q ss_pred ECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCccccCC
Q psy2145 674 VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESL 739 (808)
Q Consensus 674 ~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~~~~ 739 (808)
|+|..+..++||.+..++ +|.|.+++.+|+|.|+|.|+|.+|.+...+.|.|+.++.|.....
T Consensus 462 k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~ 524 (1051)
T KOG3513|consen 462 KGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPS 524 (1051)
T ss_pred cCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccc
Confidence 999988889999987765 799999999999999999999999999999999999988876444
No 3
>KOG4222|consensus
Probab=100.00 E-value=3.9e-46 Score=406.86 Aligned_cols=465 Identities=26% Similarity=0.449 Sum_probs=364.6
Q ss_pred CccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec----cCcEEEEeeCCeEEEEEccc--CcCCC
Q psy2145 47 NFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI----GHRFRPIHDFGYVALDIIDT--IPEDS 120 (808)
Q Consensus 47 ~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~----~~r~~~~~~~~~~~L~I~~~--~~~D~ 120 (808)
...+.++..|.++ .+..|+.++|.|.++ |+|.++|+|||+|..... ++|+. ..++.-+-|.+.+- ...|.
T Consensus 29 d~~p~iiehp~d~-vvs~~~patlnc~as--G~ppPti~w~k~G~~~~~~e~~shR~~-lp~gsLf~l~~ahg~~a~~d~ 104 (1281)
T KOG4222|consen 29 DQPPRIIEHPHDL-VVSKGEPATLNCKAS--GDPPPTIEWYKDGENVFKGEPGSHRFL-LPDGSLFLLRLAHGKKAGHDH 104 (1281)
T ss_pred cCCCceEecchhh-hccCCCCceeecCCC--CCCCCceecccCCcccCCCCCCCccee-cCCccEEEEecccCCcccCCC
Confidence 3457778889998 899999999999999 689999999999965443 23333 33444344444331 22399
Q ss_pred eeEEEEEEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCC
Q psy2145 121 GTYTCRAVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199 (808)
Q Consensus 121 G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~ 199 (808)
|.|+|.|+|..|...+ .+.|.|.. .+-.|.+.+.++.+..|+
T Consensus 105 G~y~cvasn~~g~avSr~a~L~vav-------------------------------------lrddfrv~prd~~~a~ge 147 (1281)
T KOG4222|consen 105 GVYSCVASNRLGEAVSRGASLIVAV-------------------------------------LRDDFRVSPRDVQAAVGE 147 (1281)
T ss_pred ceeEeeecCccceeeecCceEEEEE-------------------------------------echhcccCcccccccccc
Confidence 9999999999997643 34554431 122355567777888999
Q ss_pred eEEEEEEEeecCCCCeEEEEeeCCEEcc--CCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE-EEEEEEe
Q psy2145 200 RAHFECRLIPVSDNTMKVEWFHNNVPIK--SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT-SGNLLVH 276 (808)
Q Consensus 200 ~v~L~C~~~~~~~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~ 276 (808)
.++|+|.- +.+.|.+.+.|.|+|+++. ...++.+..+ | .|.|.++..+|.|.|.|++.|.+|...+ -+.|.|+
T Consensus 148 ~avlEcgp-P~ghpeptvSw~Kdg~pl~~~~~~~~~lisg-G--~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~ 223 (1281)
T KOG4222|consen 148 EAVLECGP-PRGHPEPTVSWVKDGKPLDHYDVPIIALISG-G--NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ 223 (1281)
T ss_pred eeEEeccC-CCCCCCCcceeecCCCccccccceeEEEecC-C--cEEEeccccCCCceeeeeecccccccccccceeeec
Confidence 99999985 4799999999999999997 3333433444 4 7999999999999999999999998766 4788886
Q ss_pred eCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCE
Q psy2145 277 SKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGV 356 (808)
Q Consensus 277 ~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~ 356 (808)
. +|.|...+.+..+..|..+.|.|++ .|+|.+.|.|.+++.
T Consensus 224 e-------------------------------------~P~f~~rp~~~~v~~g~~~~f~c~v--~GdP~P~Vrwkk~~~ 264 (1281)
T KOG4222|consen 224 E-------------------------------------KPWFWKRPKDLAVLVGAAAEFDCRV--GGDPQPTVRWKKDDP 264 (1281)
T ss_pred c-------------------------------------CCccccccccceeeccccccccccc--CCCCCCceeeeccCC
Confidence 5 7788889999999999999999999 899999999999877
Q ss_pred eccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccc
Q psy2145 357 PIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFK 436 (808)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (808)
.+.. .++.+..+.. +|.|..+.+.|.|.|.|.|.|..|....++.++|+.+
T Consensus 265 ~~P~-~ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap-------------------------- 315 (1281)
T KOG4222|consen 265 SLPR-SRYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP-------------------------- 315 (1281)
T ss_pred CCCc-cceeeeeccc--cccccccCCCcccceeeeccccccccccccceEEecC--------------------------
Confidence 7654 4566665533 7999999999999999999999999999999999864
Q ss_pred cccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccc
Q psy2145 437 RKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAV 516 (808)
Q Consensus 437 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v 516 (808)
|.|.....+. .+
T Consensus 316 -------------------------------------------------------------------P~f~kkp~dq-~v 327 (1281)
T KOG4222|consen 316 -------------------------------------------------------------------PSFGKKPRDQ-KV 327 (1281)
T ss_pred -------------------------------------------------------------------cccccccCcc-cc
Confidence 4444444444 47
Q ss_pred cCCCceEEEEEEeeCCCCCcEEEEEECCEe-c-------CCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeE
Q psy2145 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKP-L-------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588 (808)
Q Consensus 517 ~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~-l-------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 588 (808)
..|..++|.|.+ .|.|.|.+.|.|.|.. + ..+.+..+...+ .|+|.+++..|.|.|.|..-|..|+.
T Consensus 328 ~lg~~vt~pc~~--~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss 402 (1281)
T KOG4222|consen 328 ALGGTVTFPCET--LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSS 402 (1281)
T ss_pred ccCceEEeeeec--CCCCCcceEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeeccccccccc
Confidence 789999999999 8999999999998753 2 123444554444 79999999999999999999999988
Q ss_pred EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCe
Q psy2145 589 VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM 668 (808)
Q Consensus 589 ~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p 668 (808)
...+.+.+......- ...|.+..... ..++.+|..+.|.|.+ .|.|.|
T Consensus 403 ~~~a~~~qt~~~~~~-----------------------------rPpp~i~~g~~-nQtl~v~s~a~l~c~a--tg~P~p 450 (1281)
T KOG4222|consen 403 LTKAYLEQTDVLTDS-----------------------------RPPPIIEQGPA-NQTLPVGSTASLPCSA--TGAPTP 450 (1281)
T ss_pred ccceeEEEEeeeccC-----------------------------CCCceeeeccc-ccccccCcccccChhh--hCCCCC
Confidence 888888777532110 01234444443 4567789999999999 899999
Q ss_pred EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 669 RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 669 ~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
.|.|+++|-.+...+....... ..+|+|.+...-|.|.|+|.|.+..|+++.+++|.|...
T Consensus 451 ~i~wl~dg~~v~~~d~~~s~~~--~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~ 511 (1281)
T KOG4222|consen 451 NISWLKDGCNVMNPDSRISQQE--IGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKA 511 (1281)
T ss_pred CchhhhcccccccCCcccceee--eceeeeeeeecCCCcceeeeccCcccccccceeeEhhhc
Confidence 9999999988876543333333 238999999999999999999999999999999999854
No 4
>KOG4221|consensus
Probab=100.00 E-value=1.1e-43 Score=389.83 Aligned_cols=496 Identities=23% Similarity=0.306 Sum_probs=366.6
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc--CcEEEEeeCCeEEEEEcccCc-----CCCe
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVALDIIDTIP-----EDSG 121 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~--~r~~~~~~~~~~~L~I~~~~~-----~D~G 121 (808)
..+++..|.+. .+|.++.|.|.....+.+.++|+|.|||..+... .|.+...++ +|.|.++.. -|.|
T Consensus 41 ~~~f~~ep~d~---~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg---Sl~i~~v~~~kh~~~~eg 114 (1381)
T KOG4221|consen 41 PLQFLLEPSDA---MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG---SLYISSVLASKHNKVDEG 114 (1381)
T ss_pred cceEEeccccc---ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCC---ceeEeeecccccccccCc
Confidence 35567777753 7999999999987644457899999999887654 455555555 588887766 7899
Q ss_pred eEEEEEEec-Ccce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCC
Q psy2145 122 TYTCRAVNL-VGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199 (808)
Q Consensus 122 ~Y~C~a~n~-~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~ 199 (808)
.|+|.|.-. .|.. +..+.|.+ ...+.|...+.+..+..|+
T Consensus 115 ~Yqc~atv~~~gsi~Sr~a~v~~--------------------------------------a~~~~f~~~~~~~t~~~g~ 156 (1381)
T KOG4221|consen 115 VYQCLATVEDVGSILSRTAKVAL--------------------------------------AGLADFALQPESTTLLYGQ 156 (1381)
T ss_pred eEEEEEEccccceeecceEEEEe--------------------------------------cccCccccCccceeEecCC
Confidence 999999854 3332 33344444 4467788888999999999
Q ss_pred eEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeE-EEEEEEEEeeC
Q psy2145 200 RAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA-VTSGNLLVHSK 278 (808)
Q Consensus 200 ~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~ 278 (808)
++.|.|.+ .+.|.+.+.|.||..++..+.++....++ .|.|.++++.|.|.|+|.|++..-.. +..+.|+|...
T Consensus 157 ta~f~c~v--n~e~~p~i~w~kn~~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~ 231 (1381)
T KOG4221|consen 157 TALFSCEV--NAEPVPTIMWLKNDQPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSD 231 (1381)
T ss_pred cEEEEEEE--cCccCceeEEecccccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEEEecCC
Confidence 99999999 67888899999999999888877766665 79999999999999999999964433 44688888743
Q ss_pred CcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEec
Q psy2145 279 KSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358 (808)
Q Consensus 279 ~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l 358 (808)
+.. ...-.|...+....+.+|+.+.|+|.+ .|.|.|.|.|.|||..|
T Consensus 232 ~~~-------------------------------~~~~~fl~~p~~~~v~~g~~v~leCvv--s~~p~p~v~Wlrng~~i 278 (1381)
T KOG4221|consen 232 PGA-------------------------------LNKLVFLDEPSNAVVVEGDDVVLECVV--SGVPKPSVKWLRNGEKI 278 (1381)
T ss_pred ccc-------------------------------ccceeeecCCCccccccCCcEEEEEEe--cCCCCCceEEeeCCeee
Confidence 321 122346777778889999999999999 89999999999999999
Q ss_pred cCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccc
Q psy2145 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRK 438 (808)
Q Consensus 359 ~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (808)
..++ +++..- +...|.|.+++..|+|.|+|.|.|......++++|+|..+|
T Consensus 279 ~~ds-~rivl~-g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P--------------------------- 329 (1381)
T KOG4221|consen 279 SVDS-YRIVLV-GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPP--------------------------- 329 (1381)
T ss_pred eecc-eEEEEe-cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCC---------------------------
Confidence 8765 333322 22379999999999999999999976677778888888643
Q ss_pred cceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccC
Q psy2145 439 EEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEE 518 (808)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~ 518 (808)
.|+..+.+. ...+
T Consensus 330 ------------------------------------------------------------------~~~~~p~~l-~A~e 342 (1381)
T KOG4221|consen 330 ------------------------------------------------------------------GFTKAPTTL-VAHE 342 (1381)
T ss_pred ------------------------------------------------------------------CCCCCCcce-eeee
Confidence 344444444 4677
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
+..+.|+|.+ .|.|.+++.|+|||..+..+..+++..+++ |.|.-+-..|.|.|.|.++|+.|.+...+.|.|..
T Consensus 343 ~~die~ec~~--~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~ 417 (1381)
T KOG4221|consen 343 SMDIEFECPV--SGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVP 417 (1381)
T ss_pred ccceeEeCCC--CCCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheecc
Confidence 9999999999 788999999999999988887777766543 88888889999999999999999999999997765
Q ss_pred cccccccccCcccccc---------cccccCCC-----------------------------------------------
Q psy2145 599 KAGLQLETQHPEGLKK---------IQELEQPA----------------------------------------------- 622 (808)
Q Consensus 599 ~~~i~~~~~~p~~~~~---------i~~l~~~~----------------------------------------------- 622 (808)
.+...-....+..... ...+++..
T Consensus 418 ~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~ 497 (1381)
T KOG4221|consen 418 QPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYF 497 (1381)
T ss_pred CCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEE
Confidence 5321100000000000 00000000
Q ss_pred ----------CCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCe----EEEEEECCEEccCCCcEEEE
Q psy2145 623 ----------SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM----RFEWFVNGVELKMGSRFHVQ 688 (808)
Q Consensus 623 ----------~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p----~i~W~~~g~~l~~~~~~~~~ 688 (808)
...+..++. ......++..+..+..-.+.|.+ ...|++ .|.|||.+..... ....+.
T Consensus 498 ~rv~A~n~~g~g~sS~pLk------V~t~pEgp~~~~a~ats~~ti~v--~WepP~~~n~~I~~yk~~ys~~~-~~~~~~ 568 (1381)
T KOG4221|consen 498 FRVRAKNEAGSGESSAPLK------VTTQPEGPVQLQAYATSPTTILV--TWEPPPFGNGPITGYKLFYSEDD-TGKELR 568 (1381)
T ss_pred EEEeccCcccCCccCCceE------EecCCCCCccccccccCcceEEE--EecCCCCCCCCceEEEEEEEcCC-CCceEE
Confidence 001111111 11112233335667778889999 688888 8999998877662 223333
Q ss_pred EeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCccc
Q psy2145 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736 (808)
Q Consensus 689 ~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~ 736 (808)
.+....+++|..+.+.+...|.|+|.|++|...++..|.|....+.+.
T Consensus 569 ~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~Ps 616 (1381)
T KOG4221|consen 569 VENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPS 616 (1381)
T ss_pred EecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCC
Confidence 344456999999999999999999999999999999999986655443
No 5
>KOG4221|consensus
Probab=100.00 E-value=5.7e-38 Score=345.08 Aligned_cols=486 Identities=19% Similarity=0.245 Sum_probs=326.7
Q ss_pred ccccceeeeccCCCchh--hhhhhccCCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE
Q psy2145 22 ETSYHWQNVPVPEWSKE--QENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF 99 (808)
Q Consensus 22 ed~g~y~c~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~ 99 (808)
-|+|.|+|.|.-+.... +..+.+...-.+.+..++.+. .+..|+++.|.|.+. +.|.+.+.|.||..+|..+.|+
T Consensus 111 ~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~-t~~~g~ta~f~c~vn--~e~~p~i~w~kn~~pl~~~~r~ 187 (1381)
T KOG4221|consen 111 VDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPEST-TLLYGQTALFSCEVN--AEPVPTIMWLKNDQPLPLDSRV 187 (1381)
T ss_pred ccCceEEEEEEccccceeecceEEEEecccCccccCccce-eEecCCcEEEEEEEc--CccCceeEEecccccccCCCcE
Confidence 49999999997662222 222222323345667788888 899999999999998 4788899999999999988888
Q ss_pred EEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcc-eEEEEEEEEecCCCccccccccccceeeeeecccccccccccccc
Q psy2145 100 RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF-AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEE 178 (808)
Q Consensus 100 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (808)
....++ .|.|.++++.|.|.|+|.|++.... .+..+.|+|...+..
T Consensus 188 i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~------------------------------ 234 (1381)
T KOG4221|consen 188 IVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGA------------------------------ 234 (1381)
T ss_pred EEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccc------------------------------
Confidence 777766 6999999999999999999987543 355678888743322
Q ss_pred ccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEE
Q psy2145 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 179 ~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
...-.|...+.+..+.+|+++.|+|.+ .+.|.++|.|.|||..|..+. +.+...+ ...|.|.+++..|+|.|+|
T Consensus 235 --~~~~~fl~~p~~~~v~~g~~v~leCvv--s~~p~p~v~Wlrng~~i~~ds-~rivl~g-~~slliS~a~~~dSg~YtC 308 (1381)
T KOG4221|consen 235 --LNKLVFLDEPSNAVVVEGDDVVLECVV--SGVPKPSVKWLRNGEKISVDS-YRIVLVG-GSSLLISNATDDDSGKYTC 308 (1381)
T ss_pred --ccceeeecCCCccccccCCcEEEEEEe--cCCCCCceEEeeCCeeeeecc-eEEEEec-ccceEEeccccccCceEEE
Confidence 222337888899999999999999999 699999999999999997655 3333221 1279999999999999999
Q ss_pred EEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEE
Q psy2145 259 RAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338 (808)
Q Consensus 259 ~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 338 (808)
+|.|......++++|+|.. +|.|+..+......++..+.|+|.
T Consensus 309 ~Atn~~D~idasaev~V~a-------------------------------------~P~~~~~p~~l~A~e~~die~ec~ 351 (1381)
T KOG4221|consen 309 RATNTNDSIDASAEVTVLA-------------------------------------PPGFTKAPTTLVAHESMDIEFECP 351 (1381)
T ss_pred EecCCCcccccceEEEEEc-------------------------------------CCCCCCCCcceeeeeccceeEeCC
Confidence 9999666677788888875 678888888888899999999999
Q ss_pred EeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEeccccccccc
Q psy2145 339 LIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQ 418 (808)
Q Consensus 339 ~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~ 418 (808)
+ .|.|.+.|.|+|||..+..++.+++..++. |+|..+-..|.|.|.|.++|..|.+...+.+.|...+.......
T Consensus 352 ~--~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~ 426 (1381)
T KOG4221|consen 352 V--SGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDL 426 (1381)
T ss_pred C--CCCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCc
Confidence 9 789999999999999988888877766543 88888889999999999999999999988886654422111000
Q ss_pred chHHHhhh-hccccccccccccceeeeec-cCCeeEEecCCCceeec------CCce-eEecccCCchhhhhcccccCCC
Q psy2145 419 NEAALQKI-QNLEDTSRFKRKEEEEVEVT-QQPSFTVQLNGPTELVE------GEGT-IITDTQHPKGLEKIRKLEDTEP 489 (808)
Q Consensus 419 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 489 (808)
.+..-..+ ..+......+..-...+... ..+.+++.........+ +-+. +......+...+.++.......
T Consensus 427 ~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~ 506 (1381)
T KOG4221|consen 427 LPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEA 506 (1381)
T ss_pred cccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcc
Confidence 00000000 00000000000000000000 00111111000000000 0111 1112223333333333322222
Q ss_pred CCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCc----EEEEEECCEecCCCCCeEEEeeCcEEEEE
Q psy2145 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL----KVEWFRNEKPLEDSSRITTKHDFGYVAMD 565 (808)
Q Consensus 490 ~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~----~v~W~k~g~~l~~~~~~~~~~~~~~~~L~ 565 (808)
..........+..+|. .... +..+..-.++|.+ ...|++ .|+|||......... .....+.....++
T Consensus 507 g~g~sS~pLkV~t~pE-----gp~~-~~a~ats~~ti~v--~WepP~~~n~~I~~yk~~ys~~~~~-~~~~~~~n~~e~t 577 (1381)
T KOG4221|consen 507 GSGESSAPLKVTTQPE-----GPVQ-LQAYATSPTTILV--TWEPPPFGNGPITGYKLFYSEDDTG-KELRVENNATEYT 577 (1381)
T ss_pred cCCccCCceEEecCCC-----CCcc-ccccccCcceEEE--EecCCCCCCCCceEEEEEEEcCCCC-ceEEEecCccEEE
Confidence 2222222222222333 1221 4556677788988 677776 799999887665322 2233333444899
Q ss_pred ECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 566 I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
|.++.+.+...|.|+|.|.+|...++..+.|....
T Consensus 578 i~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls 612 (1381)
T KOG4221|consen 578 INGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS 612 (1381)
T ss_pred eecCCCccceEEEEEEecCCCCCCCCCceEEEecc
Confidence 99999999999999999999999999999998643
No 6
>KOG4222|consensus
Probab=100.00 E-value=2.8e-37 Score=337.80 Aligned_cols=396 Identities=23% Similarity=0.396 Sum_probs=315.1
Q ss_pred cccceeeeccCCCchhhhhhh-ccCCc-cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec--cCc
Q psy2145 23 TSYHWQNVPVPEWSKEQENAK-KKKNF-IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI--GHR 98 (808)
Q Consensus 23 d~g~y~c~~~~~~~~~~~~~~-~~~~~-~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~--~~r 98 (808)
|.|.|.|+|.|......+..- +...+ .--+-..|.++ .+..|+.++|+|.-.. +.|.+.|.|.|+|+++.. ..+
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~-~~a~ge~avlEcgpP~-ghpeptvSw~Kdg~pl~~~~~~~ 180 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDV-QAAVGEEAVLECGPPR-GHPEPTVSWVKDGKPLDHYDVPI 180 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEechhcccCcccc-cccccceeEEeccCCC-CCCCCcceeecCCCcccccccee
Confidence 999999999999877654322 12111 12234567776 8899999999999764 789999999999999883 333
Q ss_pred EEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccc
Q psy2145 99 FRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIE 177 (808)
Q Consensus 99 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (808)
+.+ .++| .|.|.++...|+|.|.|++.|..|..++ .++|+|
T Consensus 181 ~~l-isgG--~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv----------------------------------- 222 (1281)
T KOG4222|consen 181 IAL-ISGG--NLLISNVRKSDEGTYACVATNMVGERESIPARLSV----------------------------------- 222 (1281)
T ss_pred EEE-ecCC--cEEEeccccCCCceeeeeecccccccccccceeee-----------------------------------
Confidence 333 4445 5999999999999999999999998755 467777
Q ss_pred cccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEE
Q psy2145 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257 (808)
Q Consensus 178 ~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 257 (808)
..+|.|...+.+..+..|..+.|.|++ .|+|.+.+.|.|++-.++. .++.+..+.. +|.|.++++.|.|.|.
T Consensus 223 ---~e~P~f~~rp~~~~v~~g~~~~f~c~v--~GdP~P~Vrwkk~~~~~P~-~ry~i~~d~q--tl~i~r~tp~deg~y~ 294 (1281)
T KOG4222|consen 223 ---QEKPWFWKRPKDLAVLVGAAAEFDCRV--GGDPQPTVRWKKDDPSLPR-SRYSILDDTQ--TLRIDRVTPTDEGTYV 294 (1281)
T ss_pred ---ccCCccccccccceeeccccccccccc--CCCCCCceeeeccCCCCCc-cceeeeeccc--cccccccCCCccccee
Confidence 568889999999999999999999999 7999999999998877764 4566666533 8999999999999999
Q ss_pred EEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEE
Q psy2145 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEA 337 (808)
Q Consensus 258 C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C 337 (808)
|.+.|..|....++.|+|+. +|.|...+.+..+..|..++|.|
T Consensus 295 C~a~n~vG~l~asa~ltV~a-------------------------------------pP~f~kkp~dq~v~lg~~vt~pc 337 (1281)
T KOG4222|consen 295 CPAENLVGGLEASATLTVQA-------------------------------------PPSFGKKPRDQKVALGGTVTFPC 337 (1281)
T ss_pred eeccccccccccccceEEec-------------------------------------CcccccccCccccccCceEEeee
Confidence 99999999999999999986 77888888888899999999999
Q ss_pred EEeecCCCccEEEEEECCEec--------cCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2145 338 RLIPVGDSKLKVTWLRNGVPI--------QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409 (808)
Q Consensus 338 ~~~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 409 (808)
.+ .|+|.+.+.|.+.|... ....+..+...+ +|.|.++...|.|.|.|...+..|.....+.+.+..
T Consensus 338 ~~--~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~ 412 (1281)
T KOG4222|consen 338 ET--LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTD 412 (1281)
T ss_pred ec--CCCCCcceEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEEEEe
Confidence 99 89999999999977422 122344444343 799999999999999999999888877766666654
Q ss_pred cccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCC
Q psy2145 410 KASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEP 489 (808)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (808)
.-.
T Consensus 413 ~~~----------------------------------------------------------------------------- 415 (1281)
T KOG4222|consen 413 VLT----------------------------------------------------------------------------- 415 (1281)
T ss_pred eec-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCcCCCCccCCCee-eecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECC
Q psy2145 490 HKRPEVDDNATKQRPVF-TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH 568 (808)
Q Consensus 490 ~~~~~~~~~~~~~~P~f-~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~ 568 (808)
...||.+ .....+ +++.+|..+.|.|.+ .|.|.+.+.|+++|-.+............+ +|+|.+
T Consensus 416 ----------~~rPpp~i~~g~~n-Qtl~v~s~a~l~c~a--tg~P~p~i~wl~dg~~v~~~d~~~s~~~~~--~l~i~d 480 (1281)
T KOG4222|consen 416 ----------DSRPPPIIEQGPAN-QTLPVGSTASLPCSA--TGAPTPNISWLKDGCNVMNPDSRISQQEIG--SLRIRD 480 (1281)
T ss_pred ----------cCCCCceeeecccc-cccccCcccccChhh--hCCCCCCchhhhcccccccCCcccceeeec--eeeeee
Confidence 0012333 333333 367789999999999 899999999999998776554332223223 799999
Q ss_pred CCCCCCEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 569 VRAEDEGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
...-|.|.|+|+|.+..|+..-+++|.|....
T Consensus 481 l~~~DtG~YTc~as~~~ges~wSatl~v~~~~ 512 (1281)
T KOG4222|consen 481 LKGPDTGRYTCIASDESGESTWSATLTVEKAG 512 (1281)
T ss_pred eecCCCcceeeeccCcccccccceeeEhhhcC
Confidence 99999999999999999999999999998753
No 7
>KOG4194|consensus
Probab=100.00 E-value=8.8e-32 Score=276.23 Aligned_cols=283 Identities=25% Similarity=0.432 Sum_probs=231.4
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccC-----CCceEEEecC--------ceEEEEEcc
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS-----GSRFTETNNF--------GFVALDIMQ 247 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~-----~~~~~~~~~~--------~~~~L~I~~ 247 (808)
...|+|...|..+.+..|+.++|+|.+.+.+..++.+.|.++++.... ..++.....+ -...|.+.+
T Consensus 501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 567999999999999999999999999654577899999998774321 1111111101 123699999
Q ss_pred CCCCCcEEEEEEEEeCceeEEE-EEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceE
Q psy2145 248 CLPEDSGVYTCRAVNALGQAVT-SGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIH 326 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 326 (808)
|...|.|.|+|+++|..|+..+ .+.|+|.. .|.|+..|.+..
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~~-------------------------------------~PsFtktP~dlt 623 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQ-------------------------------------APSFTKTPEDLT 623 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEeec-------------------------------------cCccccCcccce
Confidence 9999999999999999998765 58888864 789999999999
Q ss_pred eecCCeEEEEEEEeecCCCccEEEEEECCEe-ccC--CCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEE
Q psy2145 327 VAENQAAHFEARLIPVGDSKLKVTWLRNGVP-IQA--SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403 (808)
Q Consensus 327 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~-l~~--~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~ 403 (808)
+..|+.+.|+|.+ .|.|.|+|.|-|+|.. .+. ..|..+..++. .+.|.+|+.+|+|.|+|.|.|.+|..+.++
T Consensus 624 l~tg~mArl~CaA--tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanA 699 (873)
T KOG4194|consen 624 LRTGQMARLECAA--TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANA 699 (873)
T ss_pred eecccceeeeeec--cCCCCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeece
Confidence 9999999999999 8999999999998865 443 34666666655 688999999999999999999999999999
Q ss_pred EEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcc
Q psy2145 404 TLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRK 483 (808)
Q Consensus 404 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (808)
+|.|...
T Consensus 700 tL~V~e~------------------------------------------------------------------------- 706 (873)
T KOG4194|consen 700 TLTVLET------------------------------------------------------------------------- 706 (873)
T ss_pred EEEEecC-------------------------------------------------------------------------
Confidence 9999864
Q ss_pred cccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCC-cEEEEEECCEecCCCCCeEEEeeCcEE
Q psy2145 484 LEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDFGYV 562 (808)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~-~~v~W~k~g~~l~~~~~~~~~~~~~~~ 562 (808)
|.|..|+.+. .|..|+++.|.|.+ .|.|. |.+.|+|++++|.-..|.+...++.
T Consensus 707 --------------------p~f~~PL~~~-~V~~get~vlqC~a--~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQ-- 761 (873)
T KOG4194|consen 707 --------------------PSFSIPLEDQ-LVVVGETLVLQCLA--EGAPADPRLEWFKEDKPILITERHTFPDGDQ-- 761 (873)
T ss_pred --------------------Ccccccccce-EEEecceEEEEEec--CCCCCCccccccCCCCceEEeecccCCCCCe--
Confidence 4455556555 58899999999999 78887 9999999999998776655544333
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccc
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGL 602 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i 602 (808)
.|.+.+...+|+|.|+|+..|..|.......+.+...+..
T Consensus 762 llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~ 801 (873)
T KOG4194|consen 762 LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKC 801 (873)
T ss_pred EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCc
Confidence 6889999999999999999999998888888887766543
No 8
>KOG4194|consensus
Probab=99.97 E-value=1.5e-30 Score=267.14 Aligned_cols=279 Identities=25% Similarity=0.378 Sum_probs=225.6
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec-----cCcEEEEe-e-------CCeEEEEEccc
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-----GHRFRPIH-D-------FGYVALDIIDT 115 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~-----~~r~~~~~-~-------~~~~~L~I~~~ 115 (808)
.+.++.+|..+ .+..|+.++|+|.+.+....+.++.|.++++.... .-++.... + .....|.+.+|
T Consensus 503 kpqI~~qPe~~-~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 503 KPQIVTQPETV-SALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CcceecCchHh-hhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 46778899998 88999999999999864456679999998864321 11111111 0 12246999999
Q ss_pred CcCCCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCcee
Q psy2145 116 IPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCE 194 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 194 (808)
+..|+|.|+|+++|.+|.. +..+.|+| ...|.|+..|.+.+
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV--------------------------------------~~~PsFtktP~dlt 623 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTV--------------------------------------NQAPSFTKTPEDLT 623 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEe--------------------------------------eccCccccCcccce
Confidence 9999999999999999976 45678877 46789999999999
Q ss_pred ecCCCeEEEEEEEeecCCCCeEEEEeeCCEE-ccCC--CceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEE
Q psy2145 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVP-IKSG--SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271 (808)
Q Consensus 195 v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~-l~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 271 (808)
+..|+.+.|.|.+ .|.|.|+|.|-|+|.. .+.. .|..++.++. .+-|.|++.+|.|.|+|.|.|.+|..+.++
T Consensus 624 l~tg~mArl~CaA--tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanA 699 (873)
T KOG4194|consen 624 LRTGQMARLECAA--TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANA 699 (873)
T ss_pred eecccceeeeeec--cCCCCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeece
Confidence 9999999999999 7999999999998766 5432 3444444444 678999999999999999999999999999
Q ss_pred EEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCc-cEEE
Q psy2145 272 NLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVT 350 (808)
Q Consensus 272 ~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~ 350 (808)
.|+|.. .|.|..|+.+..+..|+++.|.|.+ .|.|+ |.+.
T Consensus 700 tL~V~e-------------------------------------~p~f~~PL~~~~V~~get~vlqC~a--~~~~a~pr~~ 740 (873)
T KOG4194|consen 700 TLTVLE-------------------------------------TPSFSIPLEDQLVVVGETLVLQCLA--EGAPADPRLE 740 (873)
T ss_pred EEEEec-------------------------------------CCcccccccceEEEecceEEEEEec--CCCCCCcccc
Confidence 999976 4567778889999999999999998 78777 9999
Q ss_pred EEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy2145 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411 (808)
Q Consensus 351 W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 411 (808)
|+|+.++|.-..+.....++. -|.+.+...+|+|.|+|...|..|....-..+.|..++
T Consensus 741 W~k~d~pil~t~rh~f~d~dQ--llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~ 799 (873)
T KOG4194|consen 741 WFKEDKPILITERHTFPDGDQ--LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKK 799 (873)
T ss_pred ccCCCCceEEeecccCCCCCe--EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecC
Confidence 999999987776655433333 58888888999999999999999988777666666544
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=257.28 Aligned_cols=261 Identities=19% Similarity=0.308 Sum_probs=181.3
Q ss_pred CceEeecCCeEEEEEEEe---ecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2145 323 RDIHVAENQAAHFEARLI---PVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399 (808)
Q Consensus 323 ~~~~v~~G~~~~l~C~~~---~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 399 (808)
....+.+|+++.|.|.+. ..|.|.++|+|+|+|... .+.....+ +. .|.|.++..+|+|.|+|.|.|..|..
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~~-g~-~l~i~~~~~~DsG~Y~C~a~N~~g~~ 108 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPIDN-GS-NMLILNPTQSDSGIYICITKNETYCD 108 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEccC-Cc-eEEEcccCcccCeEEEEEEECCCcce
Confidence 344566899999999862 148888999999998532 22222223 32 47799999999999999999999988
Q ss_pred EEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhh
Q psy2145 400 VTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLE 479 (808)
Q Consensus 400 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (808)
..++.|+|.....
T Consensus 109 ~~s~~L~V~~~~~------------------------------------------------------------------- 121 (326)
T PHA02785 109 MMSLNLTIVSVSE------------------------------------------------------------------- 121 (326)
T ss_pred EEEEEEEEEecCC-------------------------------------------------------------------
Confidence 8888888875321
Q ss_pred hhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEE---eeCCCCCcEEEEEECCEecCCCCCeEEE
Q psy2145 480 KIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRL---IPVGDPTLKVEWFRNEKPLEDSSRITTK 556 (808)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v---~~~g~P~~~v~W~k~g~~l~~~~~~~~~ 556 (808)
|.|...+.+ ..+.+|..+.|.|.. ...+.|.+.|+|++++. + .+.++...
T Consensus 122 ------------------------~~~~~~~~~-~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~ 174 (326)
T PHA02785 122 ------------------------SNIDLISYP-QIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR 174 (326)
T ss_pred ------------------------Cccceeecc-ceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec
Confidence 001000001 136789999999962 11468999999998753 3 33444432
Q ss_pred eeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEE----EEEEEEecccccccccCcccccccccccCCCCCCCCCCccc
Q psy2145 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT----ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632 (808)
Q Consensus 557 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s----~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~ 632 (808)
. .+ .|.|.+++.+|+|.|+|.|.|..|..... +.|.|..+.
T Consensus 175 ~-~~--~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~-------------------------------- 219 (326)
T PHA02785 175 T-PG--IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRI-------------------------------- 219 (326)
T ss_pred C-CC--eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccC--------------------------------
Confidence 2 22 79999999999999999999998876543 334443210
Q ss_pred cCCCeEEeecCCCccccCCceEEEEEEEeeCCCCC---eEEEEEECCEEccCC-----CcEEEEEe-----C---CEEEE
Q psy2145 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT---MRFEWFVNGVELKMG-----SRFHVQHD-----F---GYVTL 696 (808)
Q Consensus 633 ~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~---p~i~W~~~g~~l~~~-----~~~~~~~~-----~---~~~~L 696 (808)
.+|.+.. + ....+..|+.++|.|.+ .|.|. +.|.|+|||+.|... .++..... . ....|
T Consensus 220 -~pp~~~~-p-~~~~~~~G~~v~L~C~a--~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 294 (326)
T PHA02785 220 -IPPTMQL-P-EGVVTSIGSNLTIACRV--SLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRL 294 (326)
T ss_pred -CCceecC-C-CcEEecCCCcEEEEEEE--ECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEE
Confidence 1233322 2 23457789999999999 78886 489999999998643 23332221 0 13589
Q ss_pred EEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 697 DITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 697 ~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
+|.+|+.+|+|.|+|.|.|..|....
T Consensus 295 ~I~~V~~~D~G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 295 NINPVKEEDATTFTCMAFTIPSISKT 320 (326)
T ss_pred EECCcchhcCeeeEEEEEeccCceEe
Confidence 99999999999999999999854433
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=1.1e-27 Score=249.80 Aligned_cols=257 Identities=20% Similarity=0.265 Sum_probs=182.6
Q ss_pred ccCCCCcEEEEEEEee---CCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEE
Q psy2145 61 NLRERGHAHFECKLEP---VTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ 137 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~---~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 137 (808)
.+.+|+.+.|.|.+.. .|.|.+++.|+|+|... .+..... .+. .|.|.++..+|+|.|+|.|.|..|....+
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~-~g~-~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s 111 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPID-NGS-NMLILNPTQSDSGIYICITKNETYCDMMS 111 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEcc-CCc-eEEEcccCcccCeEEEEEEECCCcceEEE
Confidence 5678999999998721 15788899999998532 1222222 222 58899999999999999999999988888
Q ss_pred EEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEe---ecCCCC
Q psy2145 138 ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI---PVSDNT 214 (808)
Q Consensus 138 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~---~~~~p~ 214 (808)
+.|+|.... +|.|...+.+..+.+|..+.|.|... ..+.|.
T Consensus 112 ~~L~V~~~~------------------------------------~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~ 155 (326)
T PHA02785 112 LNLTIVSVS------------------------------------ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVN 155 (326)
T ss_pred EEEEEEecC------------------------------------CCccceeeccceecccCcEEEECCChhhcccCCCC
Confidence 988886421 12222233345577999999999721 136788
Q ss_pred eEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE----EEEEEEeeCCcccccccccch
Q psy2145 215 MKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT----SGNLLVHSKKSIQTETQHGES 290 (808)
Q Consensus 215 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~----~~~l~V~~~~~i~~~~~~~~~ 290 (808)
+.|+|++++. + ...++..... + .|.|.+++.+|.|.|+|.|.|..|.... .+.|.|..+
T Consensus 156 ~~i~W~k~~~-~-~~~r~~~~~~-~--~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~------------ 218 (326)
T PHA02785 156 ADIIWSGHRR-L-RNKRLKQRTP-G--IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR------------ 218 (326)
T ss_pred ceEEEccCCc-c-CCcceEecCC-C--eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEecc------------
Confidence 9999998653 3 3344443222 2 7999999999999999999998886543 334554321
Q ss_pred hhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCc---cEEEEEECCEeccCCC-----
Q psy2145 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK---LKVTWLRNGVPIQASN----- 362 (808)
Q Consensus 291 ~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~---~~v~W~~~g~~l~~~~----- 362 (808)
..+|.+..+ ....+..|+.++|.|.+ .|.|. +.|.|++||..|...+
T Consensus 219 ----------------------~~pp~~~~p-~~~~~~~G~~v~L~C~a--~g~P~~~~~~v~W~kng~~i~~~~~~~~~ 273 (326)
T PHA02785 219 ----------------------IIPPTMQLP-EGVVTSIGSNLTIACRV--SLRPPTTDADVFWISNGMYYEEDDEDGDG 273 (326)
T ss_pred ----------------------CCCceecCC-CcEEecCCCcEEEEEEE--ECCCCCCCceEEEEECCEECCCcCCCCce
Confidence 135555433 56777889999999999 67665 4899999999886431
Q ss_pred cEEEEee-----C---cEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2145 363 RVSTMHD-----F---GYVALNFKYTYPEDSGTYTCRAVNELGEAV 400 (808)
Q Consensus 363 ~~~~~~~-----~---~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~ 400 (808)
++..... . ....|.|.++..+|+|.|+|.|.|..|...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 274 RISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred eEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 2222211 0 134799999999999999999999875443
No 11
>KOG3515|consensus
Probab=99.92 E-value=2.6e-24 Score=234.33 Aligned_cols=473 Identities=18% Similarity=0.190 Sum_probs=299.8
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
....+-.. .+..|+.|.|.|.+.+ ++|...|+||+.+..+. .|+....+. +|.......+.-+.|.|+|.|..
T Consensus 10 ~~~~~l~~-~~~~g~~v~l~C~v~~-~pp~~~~eW~h~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~c~a~ns~ 82 (741)
T KOG3515|consen 10 CESSSLTV-GLRLGEDVPLPCRVNS-NPPEIDVEWYHSTSGEH--GRYATIADP---TLVTTGDVRDTVAELNCRAFNSV 82 (741)
T ss_pred ccCCCCCh-hhccCCcceeeeecCC-CCCCcceEEEecCcccc--cccccccCC---ceeeecchhhhhhhhhhhhcccc
Confidence 33444455 7899999999999997 67888999999998877 454444433 68888887888899999999984
Q ss_pred cce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeec
Q psy2145 132 GFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPV 210 (808)
Q Consensus 132 g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~ 210 (808)
+.. .....+.| ..+|.-...........+..+.+.|.+...
T Consensus 83 ~~~~~~~~~l~v--------------------------------------~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~ 124 (741)
T KOG3515|consen 83 GMPSRCPMILDV--------------------------------------DYPPACLPELGEIFQVDKGVVQIICSAKVA 124 (741)
T ss_pred cCceecceeecc--------------------------------------ccCccccccccchhhhcCCeEEEEEeecCC
Confidence 432 12222222 344544445555667788999999977667
Q ss_pred CCCCeEEEEeeCCEEccCCCc--eEEE--ecCc----eEEEEEccCCCCCcEEEEEEEEeC---ceeEEEEEEEEEeeCC
Q psy2145 211 SDNTMKVEWFHNNVPIKSGSR--FTET--NNFG----FVALDIMQCLPEDSGVYTCRAVNA---LGQAVTSGNLLVHSKK 279 (808)
Q Consensus 211 ~~p~~~v~W~~~g~~l~~~~~--~~~~--~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~ 279 (808)
+.|.+.+.|+.++........ .... ..++ ...|.+...+.+|.|.|+|.|.|. .+.......+.|....
T Consensus 125 ~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~ 204 (741)
T KOG3515|consen 125 GRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC 204 (741)
T ss_pred CCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccc
Confidence 889999999998875532221 1100 0111 225778888899999999999884 2222233333332210
Q ss_pred cccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEecc
Q psy2145 280 SIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359 (808)
Q Consensus 280 ~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~ 359 (808)
....+........+.+|+.+.|.|.+. .|+|.+.++|+++..++.
T Consensus 205 ----------------------------------~~~~~~~~~~~qsF~~g~~inlvc~~~-gg~P~~~~~w~~~s~~~~ 249 (741)
T KOG3515|consen 205 ----------------------------------KGIGITGAQEQQSFTEGQTINLVCNAQ-GGNPSQQQTWYKDSRPQS 249 (741)
T ss_pred ----------------------------------ccceecchhhcCcccccceEEEEehhh-cCCcchhhhhccccccch
Confidence 111222222235678999999999664 789999999999988776
Q ss_pred CCCcEEEEeeCc-EEEEEEccCCCC-CCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhcccccccccc
Q psy2145 360 ASNRVSTMHDFG-YVALNFKYTYPE-DSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKR 437 (808)
Q Consensus 360 ~~~~~~~~~~~~-~~~L~I~~v~~~-d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (808)
.++......++. ........+.+. +.-...|.+.| .+.+. ..+.|+.++.
T Consensus 250 ~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~~--~~tav~~~~~------------------------- 301 (741)
T KOG3515|consen 250 ESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAAS--QITAVQVKPT------------------------- 301 (741)
T ss_pred hhhcccCCCCCCcccccccccccccchhhhhhccccC-ccccc--eeeecccccc-------------------------
Confidence 653222222211 112222233333 34467799988 22221 2222222211
Q ss_pred ccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCccccc
Q psy2145 438 KEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVE 517 (808)
Q Consensus 438 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~ 517 (808)
-...+.+...+.
T Consensus 302 --------------------------------------------------------------------~~~Ist~~~~ls 313 (741)
T KOG3515|consen 302 --------------------------------------------------------------------AVPISTSDSGLS 313 (741)
T ss_pred --------------------------------------------------------------------cccccCcccccc
Confidence 011111111356
Q ss_pred CCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEE----EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT----KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 518 ~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.|+...+.|... .++|.+.+.|+|+............ ........+........|.|.|+|.|-|..+...++..
T Consensus 314 ~g~s~r~~c~~s-ss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~ 392 (741)
T KOG3515|consen 314 SGRSARSSCVSS-SSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSS 392 (741)
T ss_pred cccccccceecc-CCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccc
Confidence 788999999865 7889999999997655443221110 11112235777788889999999999998866666555
Q ss_pred EEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCC-CeEEEE
Q psy2145 594 MKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEW 672 (808)
Q Consensus 594 l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~p~i~W 672 (808)
+.+...+ +|.|...-.-...+.+++.....-.+ .|.| .+.+.|
T Consensus 393 ~~l~~l~----------------------------------~p~~L~~~~~~v~~~e~d~~~~~~~~--~~~p~~~~~~w 436 (741)
T KOG3515|consen 393 FLLPVLP----------------------------------SPAFLVRHKTAVVAMEQDHQAAPLPV--RGAPAERTFYW 436 (741)
T ss_pred eeccccC----------------------------------CchhhhhcccceeeccCccccccCcc--cCCCcccchhh
Confidence 5544322 24443333223445666666666555 3555 678999
Q ss_pred EECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCcccc
Q psy2145 673 FVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737 (808)
Q Consensus 673 ~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~~ 737 (808)
.+++..+....+-.+..-.+...+.+.++...|.|.|.|.|+|..|.+.....+.+...|.+...
T Consensus 437 ~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~ 501 (741)
T KOG3515|consen 437 TFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHL 501 (741)
T ss_pred eecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCccccc
Confidence 99999998755433222222235557779999999999999999999999999889888776543
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.87 E-value=7.2e-21 Score=185.62 Aligned_cols=159 Identities=19% Similarity=0.301 Sum_probs=119.5
Q ss_pred cccCCCceEEEEEEeeCCCC-----------CcEEEEEECCEec--CC-CCC-----eEEEe-eCcEEEEEECCCCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP-----------TLKVEWFRNEKPL--ED-SSR-----ITTKH-DFGYVAMDLSHVRAEDE 574 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P-----------~~~v~W~k~g~~l--~~-~~~-----~~~~~-~~~~~~L~I~~v~~~D~ 574 (808)
.+.+|++|.|.|.+ .+.| .+.|.|+|++... .. +.+ +.... ......|.|.+++.+|+
T Consensus 33 ~v~eGe~v~L~C~~--~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 33 YAKFGDPMVLLCTG--KHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred EecCCCCEEEEccc--cccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 57899999999998 5543 4589999998642 11 111 00000 11123799999999999
Q ss_pred EEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceE
Q psy2145 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSA 654 (808)
Q Consensus 575 G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v 654 (808)
|.|+|.|.|..|....++.|.|...+. ...+.+|+.+
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~~~-------------------------------------------~~~~~~G~~v 147 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSGTI-------------------------------------------NYQFNSGKDS 147 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecCCc-------------------------------------------cceEecCCCE
Confidence 999999999999988888888843110 1346789999
Q ss_pred EEEEEEee---CCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 655 HYDCRVVP---VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 655 ~l~C~v~~---~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
.|.|.+.. .|.|.|.|+|||||++|..++++.+..+++ +|.|.++..+|+|.|+|.|+..++..
T Consensus 148 ~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~--~L~I~~V~~~DsG~YtC~a~~~~~g~ 214 (227)
T PHA02826 148 KLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNS--TLVIKSATHDDSGIYTCNLRFNKNSN 214 (227)
T ss_pred EEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCC--EEEECcCCHHhCEEEEEEEEEeECCE
Confidence 99999831 145789999999999999888877664433 89999999999999999999876433
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.85 E-value=6.5e-20 Score=178.94 Aligned_cols=162 Identities=20% Similarity=0.239 Sum_probs=120.2
Q ss_pred CCCccccCCCCcEEEEEEEeeCC---------CCCceEEEEeCCEEe--ec-cCcE--E-EEee---CCeEEEEEcccCc
Q psy2145 56 PKSIENLRERGHAHFECKLEPVT---------DSNLKVEWFKNGRPV--TI-GHRF--R-PIHD---FGYVALDIIDTIP 117 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~---------~p~~~v~W~~~g~~l--~~-~~r~--~-~~~~---~~~~~L~I~~~~~ 117 (808)
...+ .+.+|++|.|.|.+.+.. ...+.|.|+|++... .. +.|- . +..+ ....+|.|.+++.
T Consensus 29 ~~~~-~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~ 107 (227)
T PHA02826 29 LTPV-YAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN 107 (227)
T ss_pred cceE-EecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence 3445 789999999999986422 235699999988652 11 1220 0 0001 1123799999999
Q ss_pred CCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecC
Q psy2145 118 EDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 197 (808)
+|+|.|+|.|.|..|..+.++.|.|... +.+..+.+
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~~--------------------------------------------~~~~~~~~ 143 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTFDSG--------------------------------------------TINYQFNS 143 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEEecC--------------------------------------------CccceEec
Confidence 9999999999999888888888877421 12345678
Q ss_pred CCeEEEEEEEeec---CCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 198 GQRAHFECRLIPV---SDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 198 G~~v~L~C~~~~~---~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
|+++.|.|.+.+. +.|.++|+|+|||++|..+.++....+++ +|.|.+++.+|+|.|+|.|+...
T Consensus 144 G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~--~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 144 GKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNS--TLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCC--EEEECcCCHHhCEEEEEEEEEeE
Confidence 9999999997411 34678999999999998777776554444 89999999999999999999854
No 14
>KOG3515|consensus
Probab=99.84 E-value=9.4e-20 Score=198.95 Aligned_cols=507 Identities=16% Similarity=0.112 Sum_probs=296.0
Q ss_pred ccccccccccceeeeccCCCchhhhhhh-ccCCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee
Q psy2145 16 YLSSKKETSYHWQNVPVPEWSKEQENAK-KKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT 94 (808)
Q Consensus 16 ~~~~~~ed~g~y~c~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~ 94 (808)
+-...+..-+.|.|.+.|....-..... ....+.+..+..-..+ ....+..+.+.|.+...+.|.+.+.|+.++....
T Consensus 63 ~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~-~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~ 141 (741)
T KOG3515|consen 63 TTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEI-FQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAEL 141 (741)
T ss_pred eecchhhhhhhhhhhhcccccCceecceeeccccCccccccccch-hhhcCCeEEEEEeecCCCCCCcceeeeeccEEee
Confidence 3444556677899999887333222211 1112223233333333 5678899999997776678999999999987665
Q ss_pred ccCc--EEEE---ee---CCeEEEEEcccCcCCCeeEEEEEEec---CcceEEEEEEEEecCCCccccccccccceeeee
Q psy2145 95 IGHR--FRPI---HD---FGYVALDIIDTIPEDSGTYTCRAVNL---VGFAEVQATLQCRGSAGILTSTQNETGLEQIQY 163 (808)
Q Consensus 95 ~~~r--~~~~---~~---~~~~~L~I~~~~~~D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~ 163 (808)
.... .... .. .....|.+.....+|.|.|+|.|.|. .+.......+.|....
T Consensus 142 ~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~----------------- 204 (741)
T KOG3515|consen 142 NAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC----------------- 204 (741)
T ss_pred cccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccc-----------------
Confidence 4321 1110 01 11236888889999999999999984 3334444444443211
Q ss_pred eccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCc-e-E
Q psy2145 164 LEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG-F-V 241 (808)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~-~-~ 241 (808)
....+..........+|+.+.|.|.+. .+.|...++|+++...+..+........+. . .
T Consensus 205 ------------------~~~~~~~~~~~qsF~~g~~inlvc~~~-gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~ 265 (741)
T KOG3515|consen 205 ------------------KGIGITGAQEQQSFTEGQTINLVCNAQ-GGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSS 265 (741)
T ss_pred ------------------ccceecchhhcCcccccceEEEEehhh-cCCcchhhhhccccccchhhhcccCCCCCCcccc
Confidence 111111122225688999999999877 499999999999988776542221111111 1 1
Q ss_pred EEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccC
Q psy2145 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321 (808)
Q Consensus 242 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~ 321 (808)
.+....-...+.-...|.+.| .+... ..+.|..++. .....
T Consensus 266 ~~~~~~~r~~~~~~~kc~a~n-~~~~~--~~tav~~~~~------------------------------------~~~Is 306 (741)
T KOG3515|consen 266 TLVLRVGRQDLQAQLKCKASN-LLAAS--QITAVQVKPT------------------------------------AVPIS 306 (741)
T ss_pred cccccccccchhhhhhccccC-ccccc--eeeecccccc------------------------------------ccccc
Confidence 233333333334466799998 22222 2223322110 00111
Q ss_pred CCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEE-EEeeC---cEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2145 322 MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS-TMHDF---GYVALNFKYTYPEDSGTYTCRAVNELG 397 (808)
Q Consensus 322 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~---~~~~L~I~~v~~~d~G~Y~C~a~n~~g 397 (808)
.....+..|+...+.|... .++|.+.+.|+++......+.... -.... ....+........|.|.|+|.|.|...
T Consensus 307 t~~~~ls~g~s~r~~c~~s-ss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~ 385 (741)
T KOG3515|consen 307 TSDSGLSSGRSARSSCVSS-SSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLEL 385 (741)
T ss_pred Ccccccccccccccceecc-CCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccc
Confidence 1223377899999999764 688999999999665544322111 11111 223455666777899999999998775
Q ss_pred ceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCch
Q psy2145 398 EAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKG 477 (808)
Q Consensus 398 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (808)
...++....+...+
T Consensus 386 ~~~sss~~~l~~l~------------------------------------------------------------------ 399 (741)
T KOG3515|consen 386 AHSSSSSFLLPVLP------------------------------------------------------------------ 399 (741)
T ss_pred ccccccceeccccC------------------------------------------------------------------
Confidence 44444333332111
Q ss_pred hhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCC--eEE
Q psy2145 478 LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR--ITT 555 (808)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~--~~~ 555 (808)
+|.|...-.......+++.......+. ...+.+.+.|.+++.++..... +.+
T Consensus 400 -------------------------~p~~L~~~~~~v~~~e~d~~~~~~~~~-~~p~~~~~~w~~~~~~~~~~~g~~~~v 453 (741)
T KOG3515|consen 400 -------------------------SPAFLVRHKTAVVAMEQDHQAAPLPVR-GAPAERTFYWTFRLYKLSQVDGGVVRV 453 (741)
T ss_pred -------------------------CchhhhhcccceeeccCccccccCccc-CCCcccchhheecceecccccCceEEe
Confidence 111111111111233444444444442 3445677999999998876543 333
Q ss_pred EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCC
Q psy2145 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635 (808)
Q Consensus 556 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~ 635 (808)
....+ .+.+.++.+.|.|.|.|.|+|..|.+.....+.+...|.+.
T Consensus 454 ~~~~~--~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~-------------------------------- 499 (741)
T KOG3515|consen 454 GAGAG--LGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNH-------------------------------- 499 (741)
T ss_pred ecccc--ccccceeeeccCCcceeeeccCCCceeeEEeeccccCCccc--------------------------------
Confidence 22222 45577899999999999999999999888777777655431
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCC--CeEEEEEECCEEccCCCc--EEEEEeCCEEEEEEccCCCCCcEEEEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP--TMRFEWFVNGVELKMGSR--FHVQHDFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P--~p~i~W~~~g~~l~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
.+..+.....|.++.+.|.. ...| .-.+.|.+.|.+...... -....-.....+.+......-+|.|.|
T Consensus 500 -----~~~~~~~~~~~ns~~~~~~q--~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 572 (741)
T KOG3515|consen 500 -----HLQDQVEGATGNSVDGECMQ--DEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETAC 572 (741)
T ss_pred -----ccccccccCCCCcccceeec--cccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEE
Confidence 11223456678889999998 4555 447999999987643211 000111223357777777777899999
Q ss_pred EEEeCCcceEEEEEEEEEeCC
Q psy2145 712 KAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 712 ~A~N~~G~~~~s~~l~V~~~p 732 (808)
.|.|..--+.....|.+...+
T Consensus 573 ~~d~~~~pA~~~~~l~~~s~~ 593 (741)
T KOG3515|consen 573 VVDGSSPPAGLSLVLKAYSAL 593 (741)
T ss_pred eecCCCCccccceEEEecccc
Confidence 999933334444455554443
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.78 E-value=2.2e-18 Score=145.63 Aligned_cols=96 Identities=21% Similarity=0.365 Sum_probs=86.0
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.|...+. ...+..|+.++|.|.+ .|.|+|.|.|+|||++|..+.++++......+.|.|.++..+|+|.|+|.|+|
T Consensus 1 p~~~~~p~-~~~v~~G~~v~l~C~~--~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPE-DMKVRAGESVELFCKV--TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCc-CEEEECCCEEEEEEEE--cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 44555444 3678999999999999 89999999999999999988889888777788999999999999999999999
Q ss_pred CCcceEEEEEEEEEeCCCc
Q psy2145 716 RAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 716 ~~G~~~~s~~l~V~~~p~~ 734 (808)
.+|....++.|.|.++|..
T Consensus 78 ~~G~~~~~~~l~V~~~P~p 96 (98)
T cd05762 78 KLGSRQAQVNLTVVDKPDP 96 (98)
T ss_pred CCCceeEEEEEEEecCCCC
Confidence 9999999999999998853
No 16
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.72 E-value=7e-17 Score=136.46 Aligned_cols=95 Identities=16% Similarity=0.389 Sum_probs=86.4
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEe
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATN 583 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 583 (808)
|.|+..+.+. .+..|+.+.|.|.+ .|.|.+.+.|+|||++|..+.++.+......+.|.|.++..+|+|.|+|.|.|
T Consensus 1 p~~~~~p~~~-~v~~G~~v~l~C~~--~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDM-KVRAGESVELFCKV--TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCE-EEECCCEEEEEEEE--cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 5677777776 68999999999999 89999999999999999888888887766677999999999999999999999
Q ss_pred CCeeEEEEEEEEEEeccc
Q psy2145 584 ALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 584 ~~G~~~~s~~l~V~~~~~ 601 (808)
..|...++++|.|.+.|.
T Consensus 78 ~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 78 KLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred CCCceeEEEEEEEecCCC
Confidence 999999999999998764
No 17
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.71 E-value=8.7e-17 Score=134.90 Aligned_cols=87 Identities=28% Similarity=0.480 Sum_probs=76.6
Q ss_pred eecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 640 QLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 640 ~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
..++....+.+|++++|.|.+ .|.|.|.|.|+|||.++..++++.+..+ +...+|.|.++..+|+|.|+|.|+|.+|
T Consensus 5 ~~lp~~v~v~~G~~v~L~C~v--~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 5 GGLPDVVTIMEGKTLNLTCTV--FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred ccCCceEEEeCCCcEEEEEEE--EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 334444678899999999999 7999999999999999998888887655 4567899999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy2145 719 EAVSSTSLKV 728 (808)
Q Consensus 719 ~~~~s~~l~V 728 (808)
.++.++.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 9999998876
No 18
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.69 E-value=1.9e-16 Score=130.26 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=73.7
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+.+|+.+.|.|.+ .|+|.|.|.|+|+|+++..+ .++.+......++|.|.++..+|+|.|+|.|.|.+|+++.++
T Consensus 5 ~~v~~G~~v~l~c~~--~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 5 IVVVAGNKLRLDVPI--SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEcCCEEEEEeeE--eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 467899999999999 89999999999999999864 578877766778999999999999999999999999999999
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 8876
No 19
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.69 E-value=1.7e-16 Score=126.08 Aligned_cols=73 Identities=29% Similarity=0.447 Sum_probs=65.0
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|.|.|.+ .|.|.|.|.|+|||..|.. ++++.+..+ .+..+|.|.++..+|+|.|+|.|.|.+|.+++++.|.|
T Consensus 1 v~l~C~v--~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQI--SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEE--EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 5799999 7999999999999999974 467777654 45568999999999999999999999999999999976
No 20
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.68 E-value=1.7e-16 Score=131.44 Aligned_cols=87 Identities=20% Similarity=0.340 Sum_probs=75.0
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.|...+.+ ..+.+|+.++|.|.+ .|+|.|.|+|+|+|.++..+.++.+ +++ .|.|.++..+|+|.|+|.|.|
T Consensus 2 p~i~~~~~~-~~~~~G~~v~l~C~~--~G~P~P~v~W~k~~~~~~~~~~~~~--~~~--~L~I~~v~~~D~G~Y~C~A~N 74 (88)
T cd05851 2 ADINVKFKD-TYALKGQNVTLECFA--LGNPVPVIRWRKILEPMPATAEISM--SGA--VLKIFNIQPEDEGTYECEAEN 74 (88)
T ss_pred CceEEcccc-EEEeCCCcEEEEEEe--cccCCCEEEEEECCcCCCCCCEEec--CCC--EEEECcCChhhCEEEEEEEEc
Confidence 677777765 568899999999999 8999999999999998876554433 333 799999999999999999999
Q ss_pred CCcceEEEEEEEEE
Q psy2145 716 RAGEAVSSTSLKVK 729 (808)
Q Consensus 716 ~~G~~~~s~~l~V~ 729 (808)
.+|.++.++.|.|+
T Consensus 75 ~~G~~~~~~~l~V~ 88 (88)
T cd05851 75 IKGKDKHQARVYVQ 88 (88)
T ss_pred CCCceEEEEEEEEC
Confidence 99999999999884
No 21
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.67 E-value=5.2e-16 Score=130.33 Aligned_cols=90 Identities=34% Similarity=0.663 Sum_probs=83.4
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.|...+. ...+.+|+++.|.|.+ .|.|.|.|.|++||..|..+.++.+..+++.++|.|.++..+|+|.|+|.|.|
T Consensus 1 P~~~~~~~-~~~v~~G~~~~l~c~~--~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 1 PVFTKKPK-DVTVKEGESVTLECEV--SGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEEEEESS-EEEEETTSEEEEEEEE--EESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred CEEEEecC-CEEEeCCCEEEEEEEE--EeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence 55666664 4789999999999999 68899999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEEE
Q psy2145 716 RAGEAVSSTSLKV 728 (808)
Q Consensus 716 ~~G~~~~s~~l~V 728 (808)
..|..+.++.|.|
T Consensus 78 ~~g~~~~~~~l~V 90 (90)
T PF07679_consen 78 SSGEATASVNLTV 90 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEC
Confidence 9999999999987
No 22
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.67 E-value=6.1e-16 Score=129.86 Aligned_cols=90 Identities=22% Similarity=0.368 Sum_probs=80.0
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+. ...+.+|+.++|.|.+ .|.|.|.+.|+|+|..+..+.++.+......++|.|.++..+|+|.|+|.|+
T Consensus 3 ~~~~~~~p~-~~~~~~G~~~~L~C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 3 PATILTKPR-SLTVSEGESARFSCDV--DGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCcccccCc-cEEEeCCCcEEEEEEE--eecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 466666654 3679999999999999 8999999999999999998888888777777899999999999999999999
Q ss_pred eCCcceEEEEEEE
Q psy2145 715 NRAGEAVSSTSLK 727 (808)
Q Consensus 715 N~~G~~~~s~~l~ 727 (808)
|.+|.++.++.|+
T Consensus 80 N~~G~~~~~~~l~ 92 (92)
T cd05747 80 NSEGKQEAQFTLT 92 (92)
T ss_pred cCCCCEeEEEEeC
Confidence 9999999988874
No 23
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=3.7e-16 Score=123.79 Aligned_cols=73 Identities=30% Similarity=0.454 Sum_probs=67.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.+.|.|.+ .|.|.|.|.|+|+|..+..+.++.+..++ +|.|.++..+|+|.|+|.|+|.+|.+..++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKP--KAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEec--ceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 7889999999 89999999999999999888888875433 7999999999999999999999999999999976
No 24
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.66 E-value=4.8e-16 Score=123.76 Aligned_cols=73 Identities=30% Similarity=0.490 Sum_probs=64.5
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEeC-CEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDF-GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+|.|.+ .|.|.|.|.|+|+|.++.. ..++.+..++ +..+|.|.++..+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 1 v~l~C~v--~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRV--SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEE--eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5799999 8999999999999999975 4567775543 5568999999999999999999999999999999976
No 25
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.66 E-value=6.8e-16 Score=130.36 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=71.4
Q ss_pred ccccCCceEEEEEEEeeCC-CCCeEEEEEECCEEccCCCcEEEEEeC-----CEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 646 SEIMEGQSAHYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFHVQHDF-----GYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
..+.+|++++|.|.+ .| .|+|.|.|+|||.+|..+..+.+...+ ..++|.|.++..+|+|.|+|.|+|..|.
T Consensus 13 ~~v~~G~~v~L~c~v--~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 13 IFVNLGENLNLVVEV--EAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred EEEECCCCEEEEEEE--EecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 468899999999999 79 999999999999999876555443332 2468999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy2145 720 AVSSTSLKVK 729 (808)
Q Consensus 720 ~~~s~~l~V~ 729 (808)
++.++.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999986
No 26
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=5.3e-16 Score=124.20 Aligned_cols=74 Identities=31% Similarity=0.542 Sum_probs=66.6
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
||+.+.|.|.+ .|.|.|.|.|+|+|..+..+.++.+... .+|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 eG~~v~l~C~~--~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEA--QGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeEC--CEecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 69999999999 8999999999999999987766655433 38999999999999999999999999999999876
No 27
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.64 E-value=1.6e-15 Score=121.58 Aligned_cols=74 Identities=28% Similarity=0.453 Sum_probs=68.7
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 653 ~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
++.|.|.+ .|.|.|.|.|+|||..+..+.++.+......+.|.|.++..+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~~l~c~~--~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPI--SGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeE--eeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999 899999999999999998888888877777889999999999999999999999999999999876
No 28
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=1.2e-15 Score=126.46 Aligned_cols=88 Identities=20% Similarity=0.450 Sum_probs=76.9
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
||.|...+.+. .+.+|+.+.|.|.+ .|.|.|.|+|+|++.++....++.. .++ .|.|.++..+|+|.|+|.|.
T Consensus 1 ~p~i~~~~~~~-~~~~G~~v~l~C~~--~G~P~P~v~W~k~~~~~~~~~~~~~--~~~--~L~I~~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 1 PADINVKFKDT-YALKGQNVTLECFA--LGNPVPVIRWRKILEPMPATAEISM--SGA--VLKIFNIQPEDEGTYECEAE 73 (88)
T ss_pred CCceEEccccE-EEeCCCcEEEEEEe--cccCCCEEEEEECCcCCCCCCEEec--CCC--EEEECcCChhhCEEEEEEEE
Confidence 58888888887 68899999999999 8999999999999998876544332 333 79999999999999999999
Q ss_pred eCCeeEEEEEEEEEE
Q psy2145 583 NALGEAVTTASMKIK 597 (808)
Q Consensus 583 N~~G~~~~s~~l~V~ 597 (808)
|..|....++.|.|+
T Consensus 74 N~~G~~~~~~~l~V~ 88 (88)
T cd05851 74 NIKGKDKHQARVYVQ 88 (88)
T ss_pred cCCCceEEEEEEEEC
Confidence 999999999999874
No 29
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.63 E-value=3.7e-15 Score=123.36 Aligned_cols=81 Identities=30% Similarity=0.443 Sum_probs=70.4
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEe----CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHD----FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
|+.++|.|.+ .|.|++.|.|+|+|..+..+ .+|.+... ...++|.|.++..+|+|.|+|.|.|.+|..+.++.
T Consensus 1 g~~~~l~C~~--~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTA--HGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEE--ECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 7899999999 79999999999999998654 46765431 12368999999999999999999999999999999
Q ss_pred EEEEeCCC
Q psy2145 726 LKVKSKSD 733 (808)
Q Consensus 726 l~V~~~p~ 733 (808)
|.|..+|.
T Consensus 79 L~V~~~P~ 86 (88)
T cd05735 79 LTVQEPPD 86 (88)
T ss_pred EEEeCCCC
Confidence 99998875
No 30
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.62 E-value=3.5e-15 Score=119.34 Aligned_cols=73 Identities=29% Similarity=0.450 Sum_probs=64.3
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
++|.|.+ .|.|.|.|.|+|||..|.. ..++.+..+ .+..+|.|.++..+|+|.|+|.|.|.+|.+++++.|.|
T Consensus 1 v~L~C~v--~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRV--SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEE--eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 5799999 8999999999999999984 457766543 45668999999999999999999999999999999876
No 31
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.61 E-value=3.2e-15 Score=120.82 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=66.6
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccC---CCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 652 QSAHYDCRVVPVGDPTMRFEWFVNGVELKM---GSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~---~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
+++.|.|.+...+.+++.|.|+|||++|.. +.+|.+... .....|.|.+++..|+|.|+|.|+|.+++.+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999544566899999999999962 345554321 1224899999999999999999999999999999999
Q ss_pred EEeCC
Q psy2145 728 VKSKS 732 (808)
Q Consensus 728 V~~~p 732 (808)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99987
No 32
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.61 E-value=3.1e-15 Score=126.63 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=70.9
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe------CCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD------FGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
..+..|+.+.|.|.+ .|+|+|.|.|+|||.+|..+.+..+... ...++|.|.++..+|+|.|+|.|+|..|.
T Consensus 13 ~~~~~~~~~~l~~~v--~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 13 EFANLHEVKEFVVEV--EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred EEEecCCcEEEEEEE--EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 467889999999999 7999999999999999987665443321 12368999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy2145 720 AVSSTSLKVK 729 (808)
Q Consensus 720 ~~~s~~l~V~ 729 (808)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999986
No 33
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.61 E-value=5.1e-15 Score=123.68 Aligned_cols=81 Identities=21% Similarity=0.395 Sum_probs=70.9
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+.+.|.|.+ .|.|.|.|.|++||..+..+............+|.|.++..+|.|.|+|.|+|.+|.+..++.
T Consensus 10 ~~v~~G~~v~l~C~~--~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~ 87 (90)
T cd04972 10 TVVYEGGTATIRCTA--EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQ 87 (90)
T ss_pred EEEcCCCcEEEEEEE--EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEE
Confidence 448899999999999 799999999999999987665544444455679999999999999999999999999999999
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 88 L~v 90 (90)
T cd04972 88 VTV 90 (90)
T ss_pred EeC
Confidence 875
No 34
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.61 E-value=5.2e-15 Score=124.11 Aligned_cols=88 Identities=25% Similarity=0.501 Sum_probs=75.3
Q ss_pred eecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee-CcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 507 TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD-FGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 507 ~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
+..+++...+.+|+++.|.|.+ .|.|.|.+.|+|+|.++..+.++.+... +...+|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~lp~~v~v~~G~~v~L~C~v--~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (92)
T cd05737 4 VGGLPDVVTIMEGKTLNLTCTV--FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKY 81 (92)
T ss_pred eccCCceEEEeCCCcEEEEEEE--EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECC
Confidence 3444454578999999999999 8999999999999999988888776644 445689999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy2145 586 GEAVTTASMKI 596 (808)
Q Consensus 586 G~~~~s~~l~V 596 (808)
|..+..+.|.|
T Consensus 82 G~~~~~~~v~v 92 (92)
T cd05737 82 GGETVDVTVSV 92 (92)
T ss_pred CcceEEEEEeC
Confidence 99998888765
No 35
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.61 E-value=6e-15 Score=121.04 Aligned_cols=79 Identities=22% Similarity=0.424 Sum_probs=65.8
Q ss_pred ceEEEEEEEeeCCCCCe--EEEEEECCEEccCC---CcEEE-EEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 652 QSAHYDCRVVPVGDPTM--RFEWFVNGVELKMG---SRFHV-QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p--~i~W~~~g~~l~~~---~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
++++|.|.+ .|+|.| .|.|+|||.+|... .++.. ......++|.|.+++.+|+|.|+|.|.|.+|+.++++.
T Consensus 1 ~~~~L~C~a--~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHA--SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEE--ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 468999999 799987 68999999998643 34432 22223468999999999999999999999999999999
Q ss_pred EEEEeCC
Q psy2145 726 LKVKSKS 732 (808)
Q Consensus 726 l~V~~~p 732 (808)
|.|.++|
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9999876
No 36
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.61 E-value=5.6e-15 Score=124.03 Aligned_cols=90 Identities=34% Similarity=0.731 Sum_probs=84.1
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEe
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATN 583 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 583 (808)
|.|...+.++ .+.+|+++.|.|.+ .|.|.+.+.|+++|..+..+.++.+...++.++|.|.++..+|+|.|+|.|.|
T Consensus 1 P~~~~~~~~~-~v~~G~~~~l~c~~--~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 1 PVFTKKPKDV-TVKEGESVTLECEV--SGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEEEEESSEE-EEETTSEEEEEEEE--EESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred CEEEEecCCE-EEeCCCEEEEEEEE--EeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence 6788888777 69999999999999 68899999999999999999999999888999999999999999999999999
Q ss_pred CCeeEEEEEEEEE
Q psy2145 584 ALGEAVTTASMKI 596 (808)
Q Consensus 584 ~~G~~~~s~~l~V 596 (808)
..|..+.++.|.|
T Consensus 78 ~~g~~~~~~~l~V 90 (90)
T PF07679_consen 78 SSGEATASVNLTV 90 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEC
Confidence 9999999999876
No 37
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.61 E-value=4.3e-15 Score=117.64 Aligned_cols=71 Identities=28% Similarity=0.560 Sum_probs=64.0
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 653 ~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
++.|.|.+ .|.|.|.|+|+|+|..+..+.++.+..++ .|.|.++..+|+|.|+|.|.|.+|++++++.|.|
T Consensus 1 ~v~l~C~~--~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEV--TGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEE--EEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999 79999999999999999888888776554 4888899999999999999999999999999976
No 38
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.61 E-value=5.6e-15 Score=125.56 Aligned_cols=90 Identities=28% Similarity=0.495 Sum_probs=74.5
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEE--CCEEccC-----CCcEEEEEeCCEEEEEEccCCCCCcE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV--NGVELKM-----GSRFHVQHDFGYVTLDITKCVPADSG 707 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~--~g~~l~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G 707 (808)
+|.+.. +. ...+.+|+.++|.|.+ .|.|.|.|.|+| +|..+.. +.++.+....+..+|+|.++..+|+|
T Consensus 2 ~p~i~~-~~-~~~~~~G~~v~l~C~~--~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ-LK-NETTVENGAATLSCKA--EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe-ec-cEEEcCCCcEEEEEec--ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 466654 33 3678999999999999 899999999999 5655542 34677765556679999999999999
Q ss_pred EEEEEEEeCCcceEEEEEEEE
Q psy2145 708 VYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 708 ~Y~C~A~N~~G~~~~s~~l~V 728 (808)
.|+|.|.|.+|.+..++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999999998875
No 39
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.61 E-value=6.8e-15 Score=123.48 Aligned_cols=89 Identities=25% Similarity=0.435 Sum_probs=80.1
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
||.|+.++.+. .+.+|+.+.|.|.+ .|.|.|.+.|+|+|..+..+.++.+.......+|.|.++..+|+|.|+|.|+
T Consensus 3 ~~~~~~~p~~~-~~~~G~~~~L~C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 3 PATILTKPRSL-TVSEGESARFSCDV--DGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCcccccCccE-EEeCCCcEEEEEEE--eecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 78888888776 69999999999999 8999999999999999988888877766556789999999999999999999
Q ss_pred eCCeeEEEEEEE
Q psy2145 583 NALGEAVTTASM 594 (808)
Q Consensus 583 N~~G~~~~s~~l 594 (808)
|..|..+.++.|
T Consensus 80 N~~G~~~~~~~l 91 (92)
T cd05747 80 NSEGKQEAQFTL 91 (92)
T ss_pred cCCCCEeEEEEe
Confidence 999999888776
No 40
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.60 E-value=5.4e-15 Score=117.47 Aligned_cols=73 Identities=27% Similarity=0.489 Sum_probs=63.9
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCC-CCCeEEEee-CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLED-SSRITTKHD-FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|.|+|.+ .|.|.|.|+|+|||+.|.. +.++.+..+ .+.++|.|.++..+|+|.|+|.|.|..|++++++.|.|
T Consensus 1 v~l~C~v--~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQI--SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEE--EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 5799999 8999999999999999974 456666543 45568999999999999999999999999999999876
No 41
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.60 E-value=7.2e-15 Score=123.13 Aligned_cols=81 Identities=32% Similarity=0.549 Sum_probs=69.0
Q ss_pred ccccCCceEEEEEEEeeCCCCC-eEEEEEE-CCEEccC-CCcEEEEE-eCCEEEEEEccCCCCCcEEEEEEEEeCC-cce
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPT-MRFEWFV-NGVELKM-GSRFHVQH-DFGYVTLDITKCVPADSGVYMCKAINRA-GEA 720 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~-p~i~W~~-~g~~l~~-~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~-G~~ 720 (808)
..+.+|+.++|.|.+ .|.|. |.|.|++ ||..+.. +.++.+.. +...++|.|.++..+|+|.|+|.|+|.+ |.+
T Consensus 10 ~~v~~G~~v~l~C~v--~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~ 87 (96)
T cd05865 10 GEISVGESKFFLCQV--AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGES 87 (96)
T ss_pred cEECCCCeEEEEEEE--eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcE
Confidence 468889999999999 79995 7999998 8988766 44665543 3345799999999999999999999997 999
Q ss_pred EEEEEEEE
Q psy2145 721 VSSTSLKV 728 (808)
Q Consensus 721 ~~s~~l~V 728 (808)
+.++.|.|
T Consensus 88 ~~s~~l~v 95 (96)
T cd05865 88 EATVNVKI 95 (96)
T ss_pred EEEEEEEE
Confidence 99999987
No 42
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.60 E-value=3.7e-15 Score=122.84 Aligned_cols=77 Identities=36% Similarity=0.645 Sum_probs=69.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+.++|.|.+ .|.|.|.+.|+|||.++..+.++.+. ++ .|.|.++..+|+|.|+|.|.|.+|....++.
T Consensus 9 ~~~~~G~~~~l~C~~--~g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 9 TEADIGSSLRWECKA--SGNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred cEEcCCCcEEEEEEe--eEeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence 568899999999999 79999999999999999887777653 33 7999999999999999999999999999999
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 83 l~V 85 (85)
T cd05728 83 LAV 85 (85)
T ss_pred EEC
Confidence 876
No 43
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.60 E-value=6.3e-15 Score=124.74 Aligned_cols=82 Identities=28% Similarity=0.439 Sum_probs=71.1
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+..|+.+.|.|.+ .|.|.|.|.|+|+|..+... .++.+..+ .+.|+|.++..+|+|.|+|.|.|.+|..+.++
T Consensus 13 ~~~~~G~~v~L~C~~--~g~P~p~v~W~k~g~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 13 ATANLGQSVTLACDA--DGFPEPTMTWTKDGEPIESGEEKYSFNED--GSEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred eEEeCCCCEEEEEec--cEeCCCEEEEEECCEECcCCCCEEEEeCC--CCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 357899999999999 89999999999999999875 45544332 34799999999999999999999999999999
Q ss_pred EEEEEeC
Q psy2145 725 SLKVKSK 731 (808)
Q Consensus 725 ~l~V~~~ 731 (808)
.|.|..+
T Consensus 89 ~L~V~~~ 95 (95)
T cd05730 89 HLKVFAK 95 (95)
T ss_pred EEEEEeC
Confidence 9999754
No 44
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.60 E-value=6.9e-15 Score=119.04 Aligned_cols=77 Identities=27% Similarity=0.483 Sum_probs=70.3
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
|+++.|.|.+ .|.|.|.|.|++||..+..+.++.+...++...|.|.++..+|+|.|+|.|.|..|.....+.+.+.
T Consensus 1 G~~v~l~C~~--~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVA--TGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEE--EEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEEE
Confidence 7899999999 7999999999999999988888888777778899999999999999999999999999888777653
No 45
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.60 E-value=7.3e-15 Score=124.61 Aligned_cols=91 Identities=22% Similarity=0.363 Sum_probs=74.0
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-----CcEEEEEeCCEEEEEEccCCCCCcEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-----SRFHVQHDFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y 709 (808)
+|.|...... ..+..|+.++|.|.+ .|.|.|.|+|+++|..+... .++.+..+...+.|.|.++..+|+|.|
T Consensus 2 ~p~i~~~~~~-~~~~~g~~v~l~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQ-TAMELEEQITLTCEA--SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCc-eEEEcCCCEEEEEEe--eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 4666655432 345568999999999 79999999999999887543 345555555567999999999999999
Q ss_pred EEEEEeCCcceEEEEEEEE
Q psy2145 710 MCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 710 ~C~A~N~~G~~~~s~~l~V 728 (808)
+|.|.|.+|.++.++.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999999876
No 46
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.60 E-value=8.6e-15 Score=117.88 Aligned_cols=74 Identities=32% Similarity=0.596 Sum_probs=63.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF-HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.++|.|.+ .|.|.|.|+|+|||.++...... .+....+ +|.|.++..+|+|.|+|.|.|.+|...+++.|.|
T Consensus 1 G~~v~l~C~~--~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQV--EGIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEe--eEeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999 79999999999999998764321 2222233 7999999999999999999999999999999987
No 47
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.59 E-value=1e-14 Score=121.95 Aligned_cols=82 Identities=27% Similarity=0.552 Sum_probs=72.6
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeC-CEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF-GYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
...+.+|+.+.|.|.+ .|.|.|.+.|||+|..+..+.++.+.... ..++|.|.++..+|+|.|+|.|.|.+|.+..+
T Consensus 10 ~v~v~eG~~v~L~C~v--~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 10 VVTIMEGKTLNLTCTV--FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred cEEEcCCCEEEEEEEE--EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 3568899999999999 79999999999999999888887765433 35689999999999999999999999999999
Q ss_pred EEEEE
Q psy2145 724 TSLKV 728 (808)
Q Consensus 724 ~~l~V 728 (808)
+.|.|
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 98875
No 48
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.59 E-value=4e-15 Score=114.59 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=57.7
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
++|.|.+ .|.|.|.|+|||||++|... .....|.|.++..+|+|.|+|.|+|.+|..+.+.+|+|.
T Consensus 1 ~~l~c~v--~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKV--AAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEE--EEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 5799999 79999999999999999632 123489999999999999999999999988888887764
No 49
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.59 E-value=1.2e-14 Score=119.50 Aligned_cols=80 Identities=24% Similarity=0.474 Sum_probs=71.2
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+.+|+.+.|.|.+ .|.|.|.+.|+|+|.++... .++.+........|.|.++..+|+|.|+|.|.|..|+...++.
T Consensus 6 ~v~~G~~v~l~c~~--~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 6 VVVAGNKLRLDVPI--SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEcCCEEEEEeeE--eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 58899999999999 89999999999999999764 4677666555668999999999999999999999999998888
Q ss_pred EEE
Q psy2145 594 MKI 596 (808)
Q Consensus 594 l~V 596 (808)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 865
No 50
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.59 E-value=7.5e-15 Score=117.87 Aligned_cols=74 Identities=27% Similarity=0.482 Sum_probs=63.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF-HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.++|.|.+ .|+|.|.|+|+|||+++...... ....+++ .|.|.++..+|+|.|+|.|+|.+|...+++.|.|
T Consensus 1 g~~~~l~C~a--~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRA--NGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEe--eEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 7889999999 89999999999999999754321 1222333 7999999999999999999999999999999987
No 51
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.59 E-value=1.5e-14 Score=119.83 Aligned_cols=80 Identities=25% Similarity=0.558 Sum_probs=70.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE-CCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce-EEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSS 723 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~s 723 (808)
..+.+|++++|.|.+ .|.|. .|.|++ +|..+..+.++.+..++..++|.|.++..+|+|.|+|.|+|.+|.. ..+
T Consensus 10 ~~v~~G~~v~l~C~~--~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 86 (92)
T cd05866 10 VELSVGESKFFTCTA--IGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 86 (92)
T ss_pred eEEcCCCeEEEEEEE--EEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence 568899999999999 79998 999998 6888888888888777777899999999999999999999999986 556
Q ss_pred EEEEE
Q psy2145 724 TSLKV 728 (808)
Q Consensus 724 ~~l~V 728 (808)
+.|.|
T Consensus 87 i~l~~ 91 (92)
T cd05866 87 VVLEI 91 (92)
T ss_pred EEEEE
Confidence 67665
No 52
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.58 E-value=9e-15 Score=124.26 Aligned_cols=90 Identities=27% Similarity=0.414 Sum_probs=74.4
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-----CcEEEEEeCCEEEEEEccCCCCCcEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-----SRFHVQHDFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y 709 (808)
+|.|.. +. ...+.+|+.++|.|.+ .|.|.|.|.|+++|..+... .++.+......+.|.|.++..+|+|.|
T Consensus 2 ~P~i~~-~~-~~~~~~g~~v~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKITY-LE-NQTAVELEQITLTCEA--EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Ccccee-cC-ceeEecCCcEEEEEEE--eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence 466643 33 2578899999999999 79999999999999777643 355555555667999999999999999
Q ss_pred EEEEEeCCcceEEEEEEEE
Q psy2145 710 MCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 710 ~C~A~N~~G~~~~s~~l~V 728 (808)
+|.|.|.+|.++.++.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999999998875
No 53
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=1.2e-14 Score=121.04 Aligned_cols=80 Identities=20% Similarity=0.371 Sum_probs=68.5
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
....+.+|+.++|.|.+ .|+|.|+|.|+|+|..+.....+. ..+ ..|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 9 ~~~~~~~g~~v~l~C~~--~g~P~p~v~W~k~~~~~~~~~~~~--~~~--~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 9 KDTYALKGQNVTLECFA--LGNPVPQIKWRKVDGSMPSSAEIS--MSG--AVLKIPNIQFEDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred CceEEeCCCcEEEEEEe--eEeCCCEEEEEECCCcCCCccEEE--EeC--CEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence 34568899999999999 799999999999998776654443 222 389999999999999999999999999999
Q ss_pred EEEEEE
Q psy2145 724 TSLKVK 729 (808)
Q Consensus 724 ~~l~V~ 729 (808)
+.|.|.
T Consensus 83 ~~l~V~ 88 (88)
T cd04968 83 GRIYVQ 88 (88)
T ss_pred EEEEEC
Confidence 999873
No 54
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.58 E-value=1.9e-14 Score=119.11 Aligned_cols=80 Identities=26% Similarity=0.477 Sum_probs=68.6
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEE-EEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH-VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
.+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.+.. +.......+|.|.++..+|+|.|+|.|.|.+|....++.
T Consensus 5 ~v~~G~~~~L~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 5 AVPAANTVKFRCPA--AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EcCCCCEEEEEEEc--CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 47789999999999 899999999999999998765542 222234458999999999999999999999999999999
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 876
No 55
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.58 E-value=9.1e-15 Score=115.81 Aligned_cols=73 Identities=27% Similarity=0.497 Sum_probs=66.3
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|.|.|.|+|+|++..+..+.++.+..++ +|.|.+++.+|+|.|+|.|.|..|+...++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKP--KAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEec--ceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 7889999999 89999999999999998888888775443 7999999999999999999999999999999875
No 56
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.57 E-value=1.4e-14 Score=115.26 Aligned_cols=73 Identities=26% Similarity=0.554 Sum_probs=63.5
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEeeC-cEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDF-GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|.|+|.+ .|.|.|.|+|+|+|.++..+ .++.+..++ +..+|.|.++..+|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 v~l~C~v--~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRV--SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEE--eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5799999 89999999999999999753 566665443 5557999999999999999999999999999999876
No 57
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.57 E-value=1.4e-14 Score=115.32 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=60.0
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEE--E---eCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 655 HYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ--H---DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 655 ~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~--~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
.|.|.| .|+|.|.|+|||||++|..+.++... . ....++|.|.++..+|+|.|+|+|+|.+|+++.++.+.
T Consensus 2 ~i~~~v--~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTV--KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEE--eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 478999 89999999999999999877665332 1 12356899999999999999999999999999888775
No 58
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.57 E-value=2.3e-14 Score=123.75 Aligned_cols=82 Identities=27% Similarity=0.489 Sum_probs=69.2
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEe----CCEEEEEEccCC-CCCcEEEEEEEEeCCcceEEE
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHD----FGYVTLDITKCV-PADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~----~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~s 723 (808)
.|..++|.|.+ .|.|.|.|.|+|||..|.. +.++.+... ...++|.|.++. .+|.|.|+|.|.|.+|.++.+
T Consensus 22 ~g~~v~L~C~a--~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~ 99 (109)
T cd05773 22 GSSDANLVCQA--QGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD 99 (109)
T ss_pred CCCEEEEEEEC--cccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence 57899999999 7999999999999999974 346654321 114689999997 599999999999999999999
Q ss_pred EEEEEEeCCC
Q psy2145 724 TSLKVKSKSD 733 (808)
Q Consensus 724 ~~l~V~~~p~ 733 (808)
+.|.|..+|+
T Consensus 100 i~L~~~~~p~ 109 (109)
T cd05773 100 IQLVSTSRPD 109 (109)
T ss_pred EEEEecCCCC
Confidence 9999998874
No 59
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.57 E-value=1.2e-14 Score=116.09 Aligned_cols=73 Identities=30% Similarity=0.416 Sum_probs=66.5
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.+.|.|.+ .|.|.|.|.|+|+|..+..+.++.+..++ +|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 G~~v~L~C~~--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKP--KAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEee--eEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 7889999999 79999999999999999888888765432 6999999999999999999999999999999876
No 60
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.57 E-value=2.4e-14 Score=120.92 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=69.5
Q ss_pred cccCCCceEEEEEEeeCC-CCCcEEEEEECCEecCCCCCeEEEeeC-----cEEEEEECCCCCCCCEEEEEEEEeCCeeE
Q psy2145 515 AVEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKHDF-----GYVAMDLSHVRAEDEGIYICKATNALGEA 588 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g-~P~~~v~W~k~g~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 588 (808)
.+.+|+.+.|.|.+ .| .|+|.+.|+|||.+|...........+ ....|.|.++..+|+|.|+|.|.|..|..
T Consensus 14 ~v~~G~~v~L~c~v--~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 14 FVNLGENLNLVVEV--EAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEECCCCEEEEEEE--EecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 68899999999999 78 999999999999999865554333221 13579999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2145 589 VTTASMKIK 597 (808)
Q Consensus 589 ~~s~~l~V~ 597 (808)
+.++.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999986
No 61
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.56 E-value=2.3e-14 Score=115.95 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=60.5
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe-------CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 655 HYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD-------FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 655 ~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
.|.|.+ .|.|.|.|+|||||++|..+.++.+... ...+.|.|.++..+|+|.|+|.|+|.+|.+++++.|.
T Consensus 2 ~i~~~v--~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTV--RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEe--EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 478999 7999999999999999988765543221 2356899999999999999999999999999988875
No 62
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.56 E-value=3.2e-14 Score=119.39 Aligned_cols=83 Identities=28% Similarity=0.460 Sum_probs=64.7
Q ss_pred CeEEeecCCCcc--ccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCC-CCCcEEEEEE
Q psy2145 636 PIFTQLLTGTSE--IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCV-PADSGVYMCK 712 (808)
Q Consensus 636 P~~~~~~~~~~~--v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~ 712 (808)
|.|+..+.+... ..+|+.++|.|.+ .|.|.|.|+|+|||.+|.....+++...++ +|.|.++. .+|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~--~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~ 77 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEA--RGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCL 77 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEe--eecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEE
Confidence 566666554221 1358999999999 899999999999999997655444443344 78999885 6999999999
Q ss_pred EEeCCcceEE
Q psy2145 713 AINRAGEAVS 722 (808)
Q Consensus 713 A~N~~G~~~~ 722 (808)
|+|.+|...+
T Consensus 78 A~N~~G~~~S 87 (94)
T cd05848 78 ATNSIGSILS 87 (94)
T ss_pred EEcCCCeEEe
Confidence 9999998855
No 63
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.56 E-value=1.4e-14 Score=116.02 Aligned_cols=74 Identities=28% Similarity=0.550 Sum_probs=65.5
Q ss_pred CCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 518 ~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+|+.+.|.|.+ .|.|.|.|+|+|+|..+....++.+... + +|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~--~g~P~p~i~W~k~g~~~~~~~~~~~~~~-~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEA--QGYPQPVIAWTKGGSQLSVDRRHLVLSS-G--TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeEC--CEecCCEEEEEECCEECCCCCCeEEccC-C--eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 68999999999 8999999999999999987666554333 3 7999999999999999999999999999998875
No 64
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.56 E-value=2.1e-14 Score=116.01 Aligned_cols=74 Identities=27% Similarity=0.445 Sum_probs=64.0
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF-HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.++|.|.+ .|.|.|.|.|++||..+...... .... ....|.|.++..+|+|.|+|.|.|.+|...+++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~i~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEA--EGIPQPTITWRLNGVPIEELPPDPRRRV--DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEc--eeeCCCEEEEEECCEECCCCCCcceEEc--cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7899999999 89999999999999999765433 2222 2248999999999999999999999999999999987
No 65
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.55 E-value=4.7e-14 Score=117.24 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=66.4
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS- 722 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~- 722 (808)
+...+.+|++++|.|.+ .|. .|.|.|+|||..+.. .++.+..+++ +|.|.++..+|+|.|+|.|.|.+|...+
T Consensus 11 ~~~~v~~g~~v~l~C~a--~g~-~p~i~W~kng~~l~~-~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~ 84 (91)
T cd05740 11 GNQPPEDNQPVTLTCEA--EGQ-ATYIWWVNNGSLLVP-PRLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTSD 84 (91)
T ss_pred CccccccCCcEEEEEEe--CCC-CCEEEEEECCEECCC-CCEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEee
Confidence 34578999999999999 799 999999999999865 4555544433 7999999999999999999999998655
Q ss_pred EEEEEE
Q psy2145 723 STSLKV 728 (808)
Q Consensus 723 s~~l~V 728 (808)
.+.|.|
T Consensus 85 ~~~L~V 90 (91)
T cd05740 85 PYILNV 90 (91)
T ss_pred eEEEEe
Confidence 667776
No 66
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.55 E-value=1.2e-14 Score=114.45 Aligned_cols=69 Identities=32% Similarity=0.525 Sum_probs=61.9
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
|+|.|.+ .|.|.|.|.|+|+|..+..+.++.+..+ ..|.|.++..+|+|.|+|.|.|.+|.++.++.|+
T Consensus 1 v~L~C~~--~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSA--QGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecc--eEeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 5799999 7999999999999999988888776543 3899999999999999999999999999988873
No 67
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.54 E-value=3.1e-14 Score=117.28 Aligned_cols=84 Identities=24% Similarity=0.599 Sum_probs=72.5
Q ss_pred eeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 506 f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
|+..+.+. .+.+|+.+.|.|.+ .|.|.|.+.|+|+|.++....++... ++ .|.|.++..+|+|.|+|.|.|..
T Consensus 2 ~~~~p~~~-~~~~G~~~~l~C~~--~g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~ 74 (85)
T cd05728 2 WLKVISDT-EADIGSSLRWECKA--SGNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKH 74 (85)
T ss_pred ccccCCcc-EEcCCCcEEEEEEe--eEeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCC
Confidence 44455555 68899999999999 89999999999999999877776553 33 79999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy2145 586 GEAVTTASMKI 596 (808)
Q Consensus 586 G~~~~s~~l~V 596 (808)
|....++.|.|
T Consensus 75 G~~~~~~~l~V 85 (85)
T cd05728 75 GTIYASAELAV 85 (85)
T ss_pred CeEEEEEEEEC
Confidence 99999988875
No 68
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.54 E-value=2.2e-14 Score=113.30 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=60.7
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
++|.|.+ .|.|.|.+.|+|||.+|..+.++.. . ..+|.|.++..+|+|.|+|.|.|.+|..+.++++.|.
T Consensus 1 ~~l~c~v--~g~P~p~v~W~k~g~~l~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKV--KAYPPPEIQWYKNGKLISEKNRTKK--S--GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEE--EEeCCCEEEEEECCEECCCCCEEEc--C--CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 5799999 7999999999999999987755432 2 2489999999999999999999999998888888764
No 69
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.54 E-value=6.8e-14 Score=112.14 Aligned_cols=74 Identities=24% Similarity=0.446 Sum_probs=67.0
Q ss_pred ceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 521 NAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 521 ~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
.+.|.|.+ .|.|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~--~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPI--SGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeE--eeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999 899999999999999998778887776666778999999999999999999999999999988875
No 70
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.53 E-value=5e-14 Score=119.29 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=69.9
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee------CcEEEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD------FGYVAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
..+..|+.+.|.|.+ .|.|+|.+.|+|||++|..+.+...... ....+|.|.++..+|+|.|+|.|.|..|+
T Consensus 13 ~~~~~~~~~~l~~~v--~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 13 EFANLHEVKEFVVEV--EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred EEEecCCcEEEEEEE--EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 367889999999999 8999999999999999987665433211 12347999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy2145 588 AVTTASMKIK 597 (808)
Q Consensus 588 ~~~s~~l~V~ 597 (808)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999986
No 71
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.53 E-value=7.9e-14 Score=116.47 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=71.9
Q ss_pred eecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCe
Q psy2145 507 TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG 586 (808)
Q Consensus 507 ~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 586 (808)
+.++.+. .+.+|+.+.|.|.+ .|.|.|.++|++||..+................|.|.++..+|.|.|+|.|.|..|
T Consensus 4 v~~p~~~-~v~~G~~v~l~C~~--~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G 80 (90)
T cd04972 4 VDGPNAT-VVYEGGTATIRCTA--EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVG 80 (90)
T ss_pred ccCCcCE-EEcCCCcEEEEEEE--EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCC
Confidence 3344444 48899999999999 79999999999999988766554333334455899999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy2145 587 EAVTTASMKI 596 (808)
Q Consensus 587 ~~~~s~~l~V 596 (808)
+...++.|.|
T Consensus 81 ~~~~~~~L~v 90 (90)
T cd04972 81 QANVSVQVTV 90 (90)
T ss_pred ceeEEEEEeC
Confidence 9999988865
No 72
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.53 E-value=2.5e-14 Score=111.80 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=58.3
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
++|.|.+ .|.|.|.|.|||||++|..+.++. .+ ..|.|.++..+|+|.|+|.|.|.+|..+.+.++.+.
T Consensus 1 ~~~~c~v--~G~P~P~v~W~k~g~~l~~~~~~~---~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKY--YGYPPPEVKWYKNGQLIVLNHTFK---RG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEE--EEeCCCEEEEEECCEECCCCCEEc---cC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 4789999 799999999999999998654432 12 379999999999999999999999988887776654
No 73
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.53 E-value=5.9e-14 Score=115.85 Aligned_cols=79 Identities=25% Similarity=0.439 Sum_probs=64.9
Q ss_pred ceEEEEEEEeeCCCCCe--EEEEEECCEEccCC---CcEE-EEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 652 QSAHYDCRVVPVGDPTM--RFEWFVNGVELKMG---SRFH-VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p--~i~W~~~g~~l~~~---~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
+++.|.|.+ .|+|.| .+.|+|||.+|... .++. ........+|.|.+++.+|+|.|+|.|.|.+|..+.++.
T Consensus 1 e~~~L~C~~--~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHA--SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEE--ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 468999999 788877 67999999998643 2332 112223458999999999999999999999999999999
Q ss_pred EEEEeCC
Q psy2145 726 LKVKSKS 732 (808)
Q Consensus 726 l~V~~~p 732 (808)
|.|.++|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9999876
No 74
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.53 E-value=4e-14 Score=114.72 Aligned_cols=76 Identities=26% Similarity=0.505 Sum_probs=66.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+.+.|.|.+ .|. .+.|.|+|||++|..+.++.+.. + +|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 4 ~~~~~G~~v~l~C~~--~~~-~~~v~W~k~g~~l~~~~~~~~~~--~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 4 YSAHPGDLLQLRCRL--RDD-VQSINWTKDGVQLGENNRTRITG--E--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred EEecCCCCEEEEEEe--cCC-CceEEEeeCCcCCCCCceEEEeC--C--EEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 457899999999999 676 56899999999999888877642 2 7999999999999999999999999988888
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 775
No 75
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.53 E-value=7.8e-14 Score=119.77 Aligned_cols=90 Identities=29% Similarity=0.466 Sum_probs=68.7
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-----CcEEEEEeCCEEEEEEc--cCCCCCcEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-----SRFHVQHDFGYVTLDIT--KCVPADSGV 708 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~I~--~v~~~D~G~ 708 (808)
|.|...+.+ ..+.+|+.++|.|.+ .|+|.|.|.|+|||..+... .+..+..++....+.|. .+..+|+|.
T Consensus 2 P~i~~~p~~-~~v~~G~~~~l~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 2 PRIVEHPSD-LIVSKGDPATLNCKA--EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CeEEecCce-eEEcCCCeEEEEeeC--CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 667766654 678899999999999 89999999999999998762 22222333333344443 346899999
Q ss_pred EEEEEEeCCcc-eEEEEEEEE
Q psy2145 709 YMCKAINRAGE-AVSSTSLKV 728 (808)
Q Consensus 709 Y~C~A~N~~G~-~~~s~~l~V 728 (808)
|+|.|+|.+|. .+.++.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 99999999999 677888876
No 76
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.53 E-value=8.6e-14 Score=111.28 Aligned_cols=73 Identities=25% Similarity=0.476 Sum_probs=63.2
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCC-CCCeEEEee-CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLED-SSRITTKHD-FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+.|+|.+ .|.|.|.|.|+|||..+.. ..++.+... .+..+|.|.+++.+|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 v~L~C~v--~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRV--SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEE--eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 5799999 8999999999999999974 356665443 35567999999999999999999999999999998875
No 77
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.52 E-value=5.3e-14 Score=113.35 Aligned_cols=71 Identities=31% Similarity=0.623 Sum_probs=58.3
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCC-cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGS-RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+|.|.+ .|.|.|.|.|+|||.+|..+. ++.+... ..+|.|.++..+|+|.|+|.|.|.+|...++..++|
T Consensus 1 v~L~C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHI--DGHPRPTYQWFRDGTPLSDGQGNYSVSSK--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEe--eecCCCcEEEEECCEECCCCCccEEEeCC--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 5799999 799999999999999997654 4444332 248999999999999999999999999866555444
No 78
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.52 E-value=5.8e-14 Score=109.91 Aligned_cols=69 Identities=29% Similarity=0.525 Sum_probs=58.9
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
|+.++|.|.+ .|.|.|.|.|+|+|.++....++.. +...|.|.++. |+|.|+|.|.|.+|....++.|+
T Consensus 1 G~~v~L~C~a--~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVA--VGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEe--eecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 7889999999 8999999999999999877665433 22379999974 89999999999999999988873
No 79
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.52 E-value=1.5e-13 Score=113.61 Aligned_cols=80 Identities=20% Similarity=0.428 Sum_probs=68.2
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEee----CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHD----FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
|+.+.|.|.+ .|.|++.++|+|++..+..+ .++.+... .....|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 g~~~~l~C~~--~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTA--HGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEE--ECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 7899999999 79999999999999988654 45554421 12257999999999999999999999999999999
Q ss_pred EEEEecc
Q psy2145 594 MKIKTKA 600 (808)
Q Consensus 594 l~V~~~~ 600 (808)
|.|...|
T Consensus 79 L~V~~~P 85 (88)
T cd05735 79 LTVQEPP 85 (88)
T ss_pred EEEeCCC
Confidence 9999764
No 80
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.52 E-value=1.2e-13 Score=116.89 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=69.3
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+..|+.+.|.|.+ .|.|.|.|.|+|+|..+... .++.....+. .|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 14 ~~~~G~~v~L~C~~--~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 14 TANLGQSVTLACDA--DGFPEPTMTWTKDGEPIESGEEKYSFNEDGS--EMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred EEeCCCCEEEEEec--cEeCCCEEEEEECCEECcCCCCEEEEeCCCC--EEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 57899999999999 89999999999999999765 4444333332 6999999999999999999999999999999
Q ss_pred EEEEe
Q psy2145 594 MKIKT 598 (808)
Q Consensus 594 l~V~~ 598 (808)
|.|..
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 99875
No 81
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.51 E-value=1.1e-13 Score=117.70 Aligned_cols=90 Identities=26% Similarity=0.536 Sum_probs=72.8
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEE--CCEecCC-----CCCeEEEeeCcEEEEEECCCCCCCCE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR--NEKPLED-----SSRITTKHDFGYVAMDLSHVRAEDEG 575 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k--~g~~l~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G 575 (808)
+|.+.. +.+. .+.+|+.++|.|.+ .|.|.|.|+|+| +|..+.. +.++.+....+..+|.|.+++.+|+|
T Consensus 2 ~p~i~~-~~~~-~~~~G~~v~l~C~~--~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ-LKNE-TTVENGAATLSCKA--EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe-eccE-EEcCCCcEEEEEec--ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 566654 5555 68899999999999 899999999999 4554432 24566655555568999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEE
Q psy2145 576 IYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 576 ~Y~C~a~N~~G~~~~s~~l~V 596 (808)
.|+|.|.|..|....++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999999888865
No 82
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.51 E-value=4.6e-14 Score=111.76 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=60.2
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
+.|.|.+ .|.|.|.|.|+|+|..+..+. ...... ..+|.|.++..+|+|.|+|.|.|.+|.++.++.|.|+
T Consensus 1 ~~L~C~~--~G~P~P~v~W~k~~~~~~~~~-~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIA--EGLPTPEVHWDRIDGPLSPNR-TKKLNN--NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEe--eEecCCeEEEEECCcCCCCCc-eeEEcC--CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 4799999 899999999999998886543 333222 3489999999999999999999999999999999884
No 83
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.51 E-value=7.9e-14 Score=116.46 Aligned_cols=76 Identities=29% Similarity=0.590 Sum_probs=65.3
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEc--------cCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVEL--------KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
|+.++|.|.+ .|.|.|.|.|+|+|..+ ....++.+..+ ..|+|.++..+|+|.|+|.|.|.+|....
T Consensus 1 G~~v~L~C~~--~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEA--TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEEC--CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 7899999998 89999999999998753 23456665432 27999999999999999999999999999
Q ss_pred EEEEEEEeC
Q psy2145 723 STSLKVKSK 731 (808)
Q Consensus 723 s~~l~V~~~ 731 (808)
++.|.|.+.
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 999999875
No 84
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.51 E-value=1.1e-13 Score=109.59 Aligned_cols=71 Identities=27% Similarity=0.543 Sum_probs=62.9
Q ss_pred ceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 521 NAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 521 ~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
.+.|.|.+ .|.|.|.++|+|+|..+..+.++.+..++ .|.|.++..+|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 ~v~l~C~~--~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEV--TGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEE--EEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 37899999 89999999999999999877777765554 4888899999999999999999999999998875
No 85
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.51 E-value=1.4e-13 Score=111.41 Aligned_cols=77 Identities=27% Similarity=0.527 Sum_probs=69.0
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
|+++.|.|.+ .|.|.|.|+|++++..+....++.+...++...|.|.++..+|+|.|+|.|.|..|...+.+.+.+.
T Consensus 1 G~~v~l~C~~--~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVA--TGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEE--EEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEEE
Confidence 7899999999 7999999999999999988888877776677789999999999999999999999999888776654
No 86
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.51 E-value=2.3e-13 Score=114.25 Aligned_cols=86 Identities=29% Similarity=0.518 Sum_probs=63.0
Q ss_pred CeEEeecCCCcccc---CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCC-CCCcEEEEE
Q psy2145 636 PIFTQLLTGTSEIM---EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCV-PADSGVYMC 711 (808)
Q Consensus 636 P~~~~~~~~~~~v~---~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C 711 (808)
|.|...+.. ..+. .|+.++|.|.+ .|+|.|.|+|++||..|.......+...++ +|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~P~~-~~~~~~~~g~~v~l~C~a--~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C 76 (94)
T cd05850 2 PVFEEQPSS-LLFPEGSPEEKVTLGCRA--RASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQC 76 (94)
T ss_pred CeeEECCCC-EEecCCCCCCeEEEEeEc--eeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEE
Confidence 455555443 2333 35689999999 799999999999999997543222222333 78998865 599999999
Q ss_pred EEEeCCcceEE-EEEE
Q psy2145 712 KAINRAGEAVS-STSL 726 (808)
Q Consensus 712 ~A~N~~G~~~~-s~~l 726 (808)
.|+|.+|...+ .+.|
T Consensus 77 ~A~N~~G~~~s~~a~l 92 (94)
T cd05850 77 LAINRCGTVVSREANL 92 (94)
T ss_pred EEEcCcCcEEEEEEEE
Confidence 99999998866 4554
No 87
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.50 E-value=1.8e-13 Score=110.16 Aligned_cols=74 Identities=28% Similarity=0.570 Sum_probs=62.6
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCe-EEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI-TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|.|.|.|+|+|||.++...... ......+ .|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~v~l~C~~--~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQV--EGIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEe--eEeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999 89999999999999998754321 1222233 7999999999999999999999999999999887
No 88
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.50 E-value=8.8e-14 Score=111.78 Aligned_cols=71 Identities=31% Similarity=0.499 Sum_probs=59.3
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEcc---CCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELK---MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
++|.|.+ .|.|.|.|+|+|+|.... ...++.+..+++ .|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 a~l~C~~--~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAA--TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeec--ccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999 899999999999987432 234555543333 7999999999999999999999999999999988
No 89
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.50 E-value=1.1e-13 Score=111.61 Aligned_cols=75 Identities=28% Similarity=0.408 Sum_probs=64.2
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
+.|.|.+ .|.|.|.|.|+|+|..|..+.+.++........|.|.++..+|+|.|+|.|.|..|.++.++.|.|+.
T Consensus 1 ~~L~C~v--~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHA--EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEe--eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 4799999 79999999999999999876544443334445899999999999999999999999999999999963
No 90
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.50 E-value=1.8e-13 Score=113.36 Aligned_cols=85 Identities=20% Similarity=0.394 Sum_probs=71.9
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe-CCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~-~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
..|.++ .+.+|++++|.|.+. |.|. .++||+ +|..+..+.|+.+..++...+|.|.++..+|+|.|+|.|.|..|
T Consensus 5 ~~~~~~-~v~~G~~v~l~C~~~--G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G 80 (92)
T cd05866 5 ISLSKV-ELSVGESKFFTCTAI--GEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 80 (92)
T ss_pred EEecce-EEcCCCeEEEEEEEE--EeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCC
Confidence 456677 899999999999998 4777 899998 68888888888887777677999999999999999999999999
Q ss_pred ce-EEEEEEEE
Q psy2145 133 FA-EVQATLQC 142 (808)
Q Consensus 133 ~~-~~~~~l~V 142 (808)
.. ..++.|.|
T Consensus 81 ~~~~~~i~l~~ 91 (92)
T cd05866 81 QTQEATVVLEI 91 (92)
T ss_pred cEEEEEEEEEE
Confidence 85 55666654
No 91
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.49 E-value=2.4e-13 Score=113.13 Aligned_cols=87 Identities=23% Similarity=0.379 Sum_probs=73.8
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
||.+...+.+..+.+|+.++|.|.+ .+.|.+.+.|+|++..+....... ..++ .|.|.+++.+|+|.|+|.|.|
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~--~g~P~p~v~W~k~~~~~~~~~~~~--~~~~--~L~i~~v~~~D~G~Y~C~a~N 74 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFA--LGNPVPQIKWRKVDGSMPSSAEIS--MSGA--VLKIPNIQFEDEGTYECEAEN 74 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEe--eEeCCCEEEEEECCCcCCCccEEE--EeCC--EEEECCCCcccCEEEEEEEEE
Confidence 4667778888999999999999999 588999999999988776544333 2223 899999999999999999999
Q ss_pred CceeEEEEEEEEE
Q psy2145 263 ALGQAVTSGNLLV 275 (808)
Q Consensus 263 ~~g~~~~~~~l~V 275 (808)
..|....++.|.|
T Consensus 75 ~~G~~~~~~~l~V 87 (88)
T cd04968 75 IKGKDTHQGRIYV 87 (88)
T ss_pred CCCcEEEEEEEEE
Confidence 9999999999887
No 92
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.49 E-value=2.3e-13 Score=115.38 Aligned_cols=91 Identities=20% Similarity=0.462 Sum_probs=72.1
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-----CCeEEEeeCcEEEEEECCCCCCCCEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-----SRITTKHDFGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y 577 (808)
+|.|....... .+..|+.+.|.|.+ .|.|.|.|+|++++..+... .++.+........|.|.++..+|+|.|
T Consensus 2 ~p~i~~~~~~~-~~~~g~~v~l~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQT-AMELEEQITLTCEA--SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCce-EEEcCCCEEEEEEe--eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 46665554443 35568999999999 89999999999999877543 234444444446899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy2145 578 ICKATNALGEAVTTASMKI 596 (808)
Q Consensus 578 ~C~a~N~~G~~~~s~~l~V 596 (808)
+|.|.|..|..+.++.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999988875
No 93
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.49 E-value=1.1e-13 Score=106.58 Aligned_cols=66 Identities=12% Similarity=0.311 Sum_probs=56.8
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
+.|.|.+ .|.|.|.++|+|||++|.... ....|.|.++..+|+|.|+|.|+|..|..+.+.+|.|.
T Consensus 1 ~~l~c~v--~g~P~P~v~W~kdg~~l~~~~--------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKV--AAYPPPEFQWYKDGKLISGKH--------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEE--EEeCCCEEEEEECCEECcccC--------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 5799999 899999999999999996321 12279999999999999999999999988888777764
No 94
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.49 E-value=1.9e-13 Score=109.72 Aligned_cols=74 Identities=26% Similarity=0.539 Sum_probs=62.8
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCC-eEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR-ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|+|.|+|+|+|||+++..... .....+++ .|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 g~~~~l~C~a--~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRA--NGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEe--eEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 7889999999 8999999999999999864322 11223333 6899999999999999999999999999999987
No 95
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.49 E-value=1.3e-13 Score=108.63 Aligned_cols=69 Identities=33% Similarity=0.557 Sum_probs=59.7
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
++|.|.+ .|.|.|.|.|+|+|..+.. .++.+..+ .+|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 v~l~C~~--~g~P~p~v~W~k~~~~~~~-~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEV--GGDPVPTVLWRKEDGELPK-GRAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEEC--ccCCCCEEEEEECCccCCC-CcEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 5799999 8999999999999887754 45665532 27999999999999999999999999999999876
No 96
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.49 E-value=7.5e-14 Score=116.35 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=60.7
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEEC----CEEccCCC-c-EEEEE-------eCCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVN----GVELKMGS-R-FHVQH-------DFGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~----g~~l~~~~-~-~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
|+.++|.|.+ .|+|.|.|+|+|+ |..+..+. . ..+.. .+....|.|.++..+|+|.|+|.|.|.+
T Consensus 1 G~~v~l~C~v--~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEE--eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 7889999999 8999999999995 44443221 1 11111 1223589999999999999999999999
Q ss_pred cceEEEEEEEEE
Q psy2145 718 GEAVSSTSLKVK 729 (808)
Q Consensus 718 G~~~~s~~l~V~ 729 (808)
|.+.+++.|.|.
T Consensus 79 G~~~~sa~L~V~ 90 (90)
T cd04974 79 GPSHHSAWLTVL 90 (90)
T ss_pred CcccCCEEEEeC
Confidence 999999999883
No 97
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=2.2e-13 Score=109.28 Aligned_cols=73 Identities=37% Similarity=0.630 Sum_probs=63.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEE-CCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.+.|.|.+ .|.|.|.|.|++ +|..+....++.+..+ + +|.|..+..+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~v~W~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKA--RGDPEPAIHWISPDGKLISNSSRTLVYDN-G--TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEc--cCcCCCEEEEEeCCCEEecCCCeEEEecC-C--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999 799999999997 7887776666655433 3 7999999999999999999999999999988875
No 98
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.48 E-value=4.1e-13 Score=112.48 Aligned_cols=87 Identities=21% Similarity=0.403 Sum_probs=70.4
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCC-eEEEEee-CCEEccC-CCceEEEe-cCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFH-NNVPIKS-GSRFTETN-NFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~-~g~~l~~-~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
.+.|.+..+.+|++++|.|.+ .+.|. +.|+|++ ||..+.. +.++.+.. +....+|.|.+++.+|+|.|+|.|+|
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v--~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQV--AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred EEeCCccEECCCCeEEEEEEE--eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence 346677789999999999999 57874 7999998 8877765 44555433 33446899999999999999999999
Q ss_pred Cc-eeEEEEEEEEE
Q psy2145 263 AL-GQAVTSGNLLV 275 (808)
Q Consensus 263 ~~-g~~~~~~~l~V 275 (808)
.. |....++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 86 88888888876
No 99
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.48 E-value=2.1e-13 Score=113.77 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=61.9
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEE----CCEEccCCCc--EEEEEe-------CCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFV----NGVELKMGSR--FHVQHD-------FGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~----~g~~l~~~~~--~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
|+.++|.|.+ .|+|.|.|+|+| +|..+..+.. ..+... ....+|.|.+++.+|+|.|+|.|.|.+
T Consensus 1 G~~v~L~C~~--~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKV--YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEE--ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 7899999999 799999999998 4666654332 222111 223689999999999999999999999
Q ss_pred cceEEEEEEEE
Q psy2145 718 GEAVSSTSLKV 728 (808)
Q Consensus 718 G~~~~s~~l~V 728 (808)
|.+..++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999999988
No 100
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.48 E-value=2.6e-13 Score=115.24 Aligned_cols=90 Identities=24% Similarity=0.490 Sum_probs=72.7
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-----CCeEEEeeCcEEEEEECCCCCCCCEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-----SRITTKHDFGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y 577 (808)
+|.|. .+.+. .+.+|+.+.|.|.+ .|.|.|.|.|++++..+... .++.+........|.|.+++.+|+|.|
T Consensus 2 ~P~i~-~~~~~-~~~~g~~v~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKIT-YLENQ-TAVELEQITLTCEA--EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Cccce-ecCce-eEecCCcEEEEEEE--eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence 46664 34444 68899999999999 79999999999999776543 244444444556899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy2145 578 ICKATNALGEAVTTASMKI 596 (808)
Q Consensus 578 ~C~a~N~~G~~~~s~~l~V 596 (808)
+|.|.|..|..+.++.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999998888865
No 101
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.48 E-value=1.4e-13 Score=110.04 Aligned_cols=71 Identities=28% Similarity=0.510 Sum_probs=59.8
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEcc--CCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce-EEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELK--MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~s~~l~V~ 729 (808)
++|.|.+ .|.|.|.|.|+|||.++. .+.++.... ++ +|.|.++..+|+|.|+|.|.|..|.. +.++.|.|+
T Consensus 1 a~l~C~~--~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAA--SGNPDPEITWFKDFLPVDTTSNGRIKQLR-SG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEE--eEecCCEEEEEECCEECccCCCCCEEEcC-Cc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4799999 899999999999999987 445655532 22 69999999999999999999999985 678888874
No 102
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.48 E-value=4.5e-13 Score=109.94 Aligned_cols=78 Identities=17% Similarity=0.382 Sum_probs=63.4
Q ss_pred CceEEEEEEeeCCCCCc--EEEEEECCEecCCC---CCeEE-EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTL--KVEWFRNEKPLEDS---SRITT-KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~--~v~W~k~g~~l~~~---~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
++++|.|.+ .|+|.| .++|+|||.+|... .++.. ........|.|.+++.+|+|.|+|.|.|..|+.++++.
T Consensus 1 ~~~~L~C~a--~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHA--SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEE--ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 478999999 788887 68999999998643 23322 22122348999999999999999999999999999999
Q ss_pred EEEEec
Q psy2145 594 MKIKTK 599 (808)
Q Consensus 594 l~V~~~ 599 (808)
|.|..+
T Consensus 79 L~V~~~ 84 (85)
T cd05854 79 LVVRGP 84 (85)
T ss_pred EEEECC
Confidence 999864
No 103
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.47 E-value=2.3e-13 Score=108.60 Aligned_cols=73 Identities=30% Similarity=0.542 Sum_probs=65.6
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|.|.|.++|+|++..+....++.....+ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKP--KAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEee--eEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 7889999999 79999999999999999887777765433 6999999999999999999999999999998875
No 104
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.47 E-value=5e-13 Score=110.57 Aligned_cols=80 Identities=26% Similarity=0.478 Sum_probs=67.5
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeE-EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+.+|+.+.|.|.+ .|.|.|.+.|+|+|..+..+.+.. .........|.|.++..+|+|.|+|.|.|..|+...++.
T Consensus 5 ~v~~G~~~~L~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 5 AVPAANTVKFRCPA--AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EcCCCCEEEEEEEc--CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 57899999999999 899999999999999998665431 112223347999999999999999999999999999998
Q ss_pred EEE
Q psy2145 594 MKI 596 (808)
Q Consensus 594 l~V 596 (808)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 875
No 105
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.47 E-value=4.7e-13 Score=113.72 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=67.5
Q ss_pred ccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCC--CcEEEEEe----CCEEEEEEccCCCC-CcEEEEEEEEeCC
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMG--SRFHVQHD----FGYVTLDITKCVPA-DSGVYMCKAINRA 717 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~--~~~~~~~~----~~~~~L~I~~v~~~-D~G~Y~C~A~N~~ 717 (808)
..+.+|+.+.|.|.+ .|.|.| .|.|+++|..|..+ .++.+... +..++|.|.++..+ |.|.|+|.|.|.+
T Consensus 11 ~~~~~G~~v~L~C~~--~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 11 QYAILGDKGRVECFI--FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred EEEeCCCcEEEEEEE--cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 458899999999999 899999 69999999998764 57777654 23468999999994 5999999999999
Q ss_pred cceEEEEEE
Q psy2145 718 GEAVSSTSL 726 (808)
Q Consensus 718 G~~~~s~~l 726 (808)
|.+..++.|
T Consensus 89 G~~~~~~~L 97 (98)
T cd05758 89 GSGTAIISL 97 (98)
T ss_pred CcccEEEEe
Confidence 999988876
No 106
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.46 E-value=4.3e-13 Score=112.09 Aligned_cols=85 Identities=24% Similarity=0.421 Sum_probs=72.6
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEee-CCeEEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHD-FGYVALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
.|..+ .+.+|+.+.|.|.+. +.|.+.+.|||+|..+..+.++.+... +...+|.|.++..+|+|.|+|.|.|..|.
T Consensus 7 ~p~~v-~v~eG~~v~L~C~v~--g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 83 (92)
T cd05891 7 LPDVV-TIMEGKTLNLTCTVF--GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG 83 (92)
T ss_pred CCCcE-EEcCCCEEEEEEEEE--EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc
Confidence 46666 899999999999998 478889999999999988777765433 33458999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy2145 134 AEVQATLQC 142 (808)
Q Consensus 134 ~~~~~~l~V 142 (808)
+..++.|.|
T Consensus 84 ~~~~~~v~~ 92 (92)
T cd05891 84 ETVDVTVSV 92 (92)
T ss_pred eeeEEEEEC
Confidence 988888764
No 107
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.46 E-value=1.6e-13 Score=112.83 Aligned_cols=78 Identities=27% Similarity=0.402 Sum_probs=66.0
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
.+..|+.++|.|.+ .|.|.|.+.|+|+|..+........ .....+|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 5 ~~~~G~~v~L~C~~--~g~p~p~i~W~k~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 5 ARPVGSSVRLKCVA--SGNPRPDITWLKDNKPLTPTEIGES--RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eccCCCeEEEEEEe--eEeCCCcEEEEECCcCCcCCcccee--cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 45679999999999 7999999999999998876544322 2334689999999999999999999999999888888
Q ss_pred EE
Q psy2145 727 KV 728 (808)
Q Consensus 727 ~V 728 (808)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 65
No 108
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.46 E-value=3.5e-13 Score=109.01 Aligned_cols=81 Identities=9% Similarity=0.219 Sum_probs=63.9
Q ss_pred CceEEEEEEeeCCCCCcEEEEEECCEecCC---CCCeEEEee-CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTLKVEWFRNEKPLED---SSRITTKHD-FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~---~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
+++.|.|.+...+.+.+.|.|+|||++|.. +.++..... .....|.|.+++.+|+|.|+|.|.|..++.+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999433456889999999999962 335544211 1112799999999999999999999999999999999
Q ss_pred EEecc
Q psy2145 596 IKTKA 600 (808)
Q Consensus 596 V~~~~ 600 (808)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99754
No 109
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.46 E-value=2.9e-13 Score=109.07 Aligned_cols=71 Identities=28% Similarity=0.528 Sum_probs=60.2
Q ss_pred EEEEEEEeeCC-CCCeEEEEEECCEEccCCCcEE---EEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 654 AHYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFH---VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 654 v~l~C~v~~~g-~P~p~i~W~~~g~~l~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
+.|.|.+ .| .|.|.+.|+|||+++..+.++. +......++|.|.++..+|+|.|+|.|.|.+|.+..++.+
T Consensus 1 ~~l~C~~--~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~ 75 (75)
T cd05750 1 LVLKCEA--TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTANV 75 (75)
T ss_pred CEEEEEc--cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence 4699999 78 9999999999999998765543 4444556799999999999999999999999998888753
No 110
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.46 E-value=7.2e-13 Score=110.62 Aligned_cols=84 Identities=24% Similarity=0.445 Sum_probs=63.9
Q ss_pred CeEEeecCCCccccC---CceEEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEeCCEEEEEEccCC-CCCcEEEE
Q psy2145 636 PIFTQLLTGTSEIME---GQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDFGYVTLDITKCV-PADSGVYM 710 (808)
Q Consensus 636 P~~~~~~~~~~~v~~---G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~ 710 (808)
|.|...+.. ..+.+ |..+.|.|.+ .|+|.|.|+|+|||.++.. ..++.+. ++ .|.|.++. .+|+|.|+
T Consensus 2 P~f~~~P~~-~~~~~~~~~~~v~l~C~a--~G~P~P~i~W~k~~~~i~~~~~~~~~~--~g--~L~I~~~~~~~D~G~Y~ 74 (93)
T cd05849 2 PVFEEQPID-TIYPEESTEGKVSVNCRA--RANPFPIYKWRKNNLDIDLTNDRYSMV--GG--NLVINNPDKYKDAGRYV 74 (93)
T ss_pred CEEEECCCC-EEecCCccCCeEEEeCcC--ccCCCCEEEEEECCEEccCCCCeEEEE--CC--EEEECcCCcCCCCEEEE
Confidence 566665544 22333 4589999999 8999999999999999864 4455432 33 79999985 68999999
Q ss_pred EEEEeCCcceEE-EEEE
Q psy2145 711 CKAINRAGEAVS-STSL 726 (808)
Q Consensus 711 C~A~N~~G~~~~-s~~l 726 (808)
|.|+|.+|...+ .+.|
T Consensus 75 C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 75 CIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEeCcceEEEccEEE
Confidence 999999998865 4554
No 111
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.46 E-value=3.6e-13 Score=107.21 Aligned_cols=71 Identities=25% Similarity=0.378 Sum_probs=58.7
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEE-----eeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 523 HFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK-----HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 523 ~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
.|.|.+ .|+|.|+|+|||||++|..+.++... ......+|.|.++..+|+|.|+|+|+|..|++..++.+.
T Consensus 2 ~i~~~v--~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTV--KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEE--eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 378999 89999999999999999877654321 112345899999999999999999999999988877664
No 112
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.46 E-value=7.7e-13 Score=110.98 Aligned_cols=84 Identities=25% Similarity=0.459 Sum_probs=66.1
Q ss_pred CeeeecCCCcccc--cCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCC-CCCCEEEEEE
Q psy2145 504 PVFTKPLQNIDAV--EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVR-AEDEGIYICK 580 (808)
Q Consensus 504 P~f~~~~~~~~~v--~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~ 580 (808)
|.|+..+.++... .+|+.+.|.|.+ .|.|.|.|+|+|||..|...........++ .|.|.++. .+|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~--~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~ 77 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEA--RGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCL 77 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEe--eecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEE
Confidence 7788877775322 257899999999 899999999999999997554433333334 68998885 6999999999
Q ss_pred EEeCCeeEEEE
Q psy2145 581 ATNALGEAVTT 591 (808)
Q Consensus 581 a~N~~G~~~~s 591 (808)
|.|..|+..+.
T Consensus 78 A~N~~G~~~S~ 88 (94)
T cd05848 78 ATNSIGSILSR 88 (94)
T ss_pred EEcCCCeEEec
Confidence 99999988653
No 113
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.45 E-value=2.9e-13 Score=107.70 Aligned_cols=71 Identities=31% Similarity=0.425 Sum_probs=59.8
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
+.|.|.+ .|.|.|.|.|+|+|..+..+ +.... .....|.|.++..+|+|.|+|.|.|.+|..+.++.|.|+
T Consensus 1 v~l~C~~--~g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 1 LLLECIA--EGLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred CEEEEEe--eEecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 4799999 79999999999999987643 33322 223489999999999999999999999999999999873
No 114
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.44 E-value=3.3e-13 Score=106.25 Aligned_cols=68 Identities=24% Similarity=0.544 Sum_probs=60.6
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
|.|.|.+ .|.|.|.|+|+|+|.++..+.++.+..+ + .|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~--~g~P~p~i~W~k~g~~~~~~~~~~~~~~-~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSA--QGDPEPTITWNKDGVQVTESGKFHISPE-G--YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecc--eEeCCCEEEEEECCEECCCCCCEEECCC-C--EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999 8999999999999999988777766543 3 79999999999999999999999999988876
No 115
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.44 E-value=7.2e-13 Score=107.00 Aligned_cols=74 Identities=27% Similarity=0.517 Sum_probs=63.3
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCe-EEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI-TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|.|.|.|.|++||..+...... ......+ .|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEA--EGIPQPTITWRLNGVPIEELPPDPRRRVDGG--TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEc--eeeCCCEEEEEECCEECCCCCCcceEEccCC--EEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7899999999 89999999999999998765432 2222223 7999999999999999999999999999999887
No 116
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.44 E-value=4.5e-13 Score=105.84 Aligned_cols=70 Identities=17% Similarity=0.372 Sum_probs=59.9
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
+.|.|.+ .|.|.|.+.|+|||++|..+.++.. .+ .+|.|.++..+|+|.|+|.|.|..|..+.+.++.|.
T Consensus 1 ~~l~c~v--~g~P~p~v~W~k~g~~l~~~~~~~~--~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKV--KAYPPPEIQWYKNGKLISEKNRTKK--SG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEE--EEeCCCEEEEEECCEECCCCCEEEc--CC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 5799999 8999999999999999987754432 22 279999999999999999999999998888887764
No 117
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.44 E-value=9e-13 Score=106.62 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=59.2
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe-------eCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 523 HFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-------DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 523 ~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
.|.|.+ .|.|.|+|+|+|||++|..+.++.... ......|.|.++..+|+|.|+|.|.|..|.++++++|.
T Consensus 2 ~i~~~v--~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTV--RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEe--EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 478999 899999999999999998776543321 12345799999999999999999999999999887765
No 118
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.44 E-value=1.4e-12 Score=111.91 Aligned_cols=91 Identities=23% Similarity=0.402 Sum_probs=70.3
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCC-----CceEEEecCceEEEEE--ccCCCCCcEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG-----SRFTETNNFGFVALDI--MQCLPEDSGV 255 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~I--~~~~~~D~G~ 255 (808)
||.|...+.+..+.+|++++|.|.+ .+.|.+.|.|+|+|..+... .+.....++....+.| ..+..+|+|.
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKA--EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeC--CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 6889999999999999999999999 68899999999999998651 2222223333333333 3447899999
Q ss_pred EEEEEEeCcee-EEEEEEEEE
Q psy2145 256 YTCRAVNALGQ-AVTSGNLLV 275 (808)
Q Consensus 256 Y~C~a~n~~g~-~~~~~~l~V 275 (808)
|+|.|.|..|. .+..+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 99999999998 556677765
No 119
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.43 E-value=6.7e-13 Score=110.16 Aligned_cols=79 Identities=28% Similarity=0.471 Sum_probs=64.9
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-E
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-S 723 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s 723 (808)
..+.+|+++.|.|.+. .|.|.|.|.|+|+|..+.. +.++.+.. . .+|.|.++..+|+|.|+|.|.|.+|...+ .
T Consensus 6 ~~~~~G~~v~l~C~~~-~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 6 TQVAVGEMAVLECSPP-RGHPEPTVSWRKDGQPLNLDNERVRIVD-D--GNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred EEEeCCCCEEEEEECC-CCCCCCEEEEEECCEECCCCCCCEEEcc-C--CEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 4678999999999873 5899999999999999987 44555543 2 37999999999999999999999998754 5
Q ss_pred EEEEE
Q psy2145 724 TSLKV 728 (808)
Q Consensus 724 ~~l~V 728 (808)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 55554
No 120
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.43 E-value=1.7e-12 Score=107.87 Aligned_cols=77 Identities=19% Similarity=0.434 Sum_probs=64.3
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE-EE
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT-TA 592 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-s~ 592 (808)
+.+.+|+.++|.|.+ .|. .|.|.|+|||..+... ++.+..+++ +|.|.+++.+|+|.|+|.|.|..|...+ .+
T Consensus 13 ~~v~~g~~v~l~C~a--~g~-~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 13 QPPEDNQPVTLTCEA--EGQ-ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred cccccCCcEEEEEEe--CCC-CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 368999999999999 788 9999999999988653 455554444 7999999999999999999999998655 56
Q ss_pred EEEE
Q psy2145 593 SMKI 596 (808)
Q Consensus 593 ~l~V 596 (808)
.|.|
T Consensus 87 ~L~V 90 (91)
T cd05740 87 ILNV 90 (91)
T ss_pred EEEe
Confidence 6666
No 121
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.43 E-value=4.4e-13 Score=104.76 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=58.0
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
+.|.|.+ .|.|.|.++|+|||++|....++. .++ .|.|.++..+|+|.|+|.|.|..|..+.+.++.+.
T Consensus 1 ~~~~c~v--~G~P~P~v~W~k~g~~l~~~~~~~---~~~--~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKY--YGYPPPEVKWYKNGQLIVLNHTFK---RGV--HLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEE--EEeCCCEEEEEECCEECCCCCEEc---cCC--EEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 4789999 899999999999999997654331 122 79999999999999999999999988877777664
No 122
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.43 E-value=1.8e-12 Score=108.86 Aligned_cols=86 Identities=24% Similarity=0.436 Sum_probs=65.0
Q ss_pred CeeeecCCCcccccCC---CceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCC-CCCCEEEEE
Q psy2145 504 PVFTKPLQNIDAVEEG---KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVR-AEDEGIYIC 579 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G---~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C 579 (808)
|.|...+.++. +.+| +.+.|.|.+ .|+|.|.|+|+|||..|............+ .|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~P~~~~-~~~~~~g~~v~l~C~a--~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C 76 (94)
T cd05850 2 PVFEEQPSSLL-FPEGSPEEKVTLGCRA--RASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQC 76 (94)
T ss_pred CeeEECCCCEE-ecCCCCCCeEEEEeEc--eeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEE
Confidence 67777777663 4444 689999999 899999999999999997543222222334 68998865 599999999
Q ss_pred EEEeCCeeEEE-EEEE
Q psy2145 580 KATNALGEAVT-TASM 594 (808)
Q Consensus 580 ~a~N~~G~~~~-s~~l 594 (808)
.|+|..|...+ .+.|
T Consensus 77 ~A~N~~G~~~s~~a~l 92 (94)
T cd05850 77 LAINRCGTVVSREANL 92 (94)
T ss_pred EEEcCcCcEEEEEEEE
Confidence 99999998765 3443
No 123
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.42 E-value=1.1e-12 Score=105.75 Aligned_cols=72 Identities=25% Similarity=0.612 Sum_probs=59.0
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCC-CeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSS-RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
|+|.|.+ .|.|.|.|+|+|+|.++..+. ++.+....+ .|.|.++..+|+|.|+|.|.|..|...++..+.|.
T Consensus 1 v~L~C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHI--DGHPRPTYQWFRDGTPLSDGQGNYSVSSKER--TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEe--eecCCCcEEEEECCEECCCCCccEEEeCCCC--EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 5799999 899999999999999997654 344433333 79999999999999999999999998766555554
No 124
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.42 E-value=9.6e-13 Score=111.22 Aligned_cols=78 Identities=29% Similarity=0.486 Sum_probs=62.2
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCc--EEEEEeCCEEEEEEccC-----CCCCcEEEEEEEEeC-C
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSR--FHVQHDFGYVTLDITKC-----VPADSGVYMCKAINR-A 717 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~--~~~~~~~~~~~L~I~~v-----~~~D~G~Y~C~A~N~-~ 717 (808)
..+.+|+++.|.|.+ .|+|.|.|.|+|||+.|....+ +.+..+ + +|.|.++ ..+|+|.|+|.|.|. .
T Consensus 9 ~~~~~g~~v~l~C~v--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~--~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~ 83 (95)
T cd05722 9 IVAVRGGPVVLNCSA--EGEPPPKIEWKKDGVLLNLVSDERRQQLPN-G--SLLITSVVHSKHNKPDEGFYQCVAQNDSL 83 (95)
T ss_pred eEEcCCCCEEEeeec--ccCCCCEEEEEECCeECccccCcceEEccC-C--eEEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence 456789999999999 8999999999999999986543 443332 3 4666666 589999999999999 9
Q ss_pred cce-EEEEEEEE
Q psy2145 718 GEA-VSSTSLKV 728 (808)
Q Consensus 718 G~~-~~s~~l~V 728 (808)
|.. +..+.|.|
T Consensus 84 G~~~s~~~~l~v 95 (95)
T cd05722 84 GSIVSRTARLTV 95 (95)
T ss_pred CcEEEeeeEEeC
Confidence 988 45677765
No 125
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.42 E-value=1.3e-12 Score=109.19 Aligned_cols=80 Identities=33% Similarity=0.600 Sum_probs=65.2
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE-CCEEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCc-ceEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAG-EAVS 722 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~ 722 (808)
..+.+|+.+.|.|.+ .|.|. .|.|++ +|..+....++.+... ...++|+|.++..+|+|.|+|.|.|.+| ....
T Consensus 10 ~~v~~G~~~~l~C~~--~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~ 86 (92)
T cd04977 10 GEISVGESKFFLCQV--IGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEA 86 (92)
T ss_pred EEECCCCeEEEEEEe--EeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCccee
Confidence 568899999999999 78875 999998 7887776666655443 4567999999999999999999999975 4566
Q ss_pred EEEEEE
Q psy2145 723 STSLKV 728 (808)
Q Consensus 723 s~~l~V 728 (808)
++.|.|
T Consensus 87 sv~l~~ 92 (92)
T cd04977 87 TVNLKI 92 (92)
T ss_pred EEEEEC
Confidence 777654
No 126
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.42 E-value=1.1e-12 Score=102.67 Aligned_cols=69 Identities=25% Similarity=0.552 Sum_probs=57.8
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
|+.+.|+|.+ .|.|.|.|+|+|+|+++....++.. +...|.|.++. |+|.|+|.|.|..|....++.|+
T Consensus 1 G~~v~L~C~a--~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVA--VGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEe--eecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 6789999999 8999999999999999876555432 22369999874 89999999999999999888763
No 127
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.42 E-value=1.2e-12 Score=106.09 Aligned_cols=79 Identities=24% Similarity=0.479 Sum_probs=65.7
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT 269 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 269 (808)
|.+..+.+|+.++|.|.+. +. .+.|.|+|||.+|..+.++.+.. + +|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 ~~~~~~~~G~~v~l~C~~~--~~-~~~v~W~k~g~~l~~~~~~~~~~--~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~ 73 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLR--DD-VQSINWTKDGVQLGENNRTRITG--E--EVQIKDAVPRDSGLYACVTSSPSGSDTT 73 (79)
T ss_pred CCcEEecCCCCEEEEEEec--CC-CceEEEeeCCcCCCCCceEEEeC--C--EEEECCCChhhCEEEEEEEeCCCCcccE
Confidence 3466788999999999994 54 56899999999998777766543 2 7999999999999999999999998777
Q ss_pred EEEEEE
Q psy2145 270 SGNLLV 275 (808)
Q Consensus 270 ~~~l~V 275 (808)
.+.|.|
T Consensus 74 ~~~v~V 79 (79)
T cd04973 74 YFSVNV 79 (79)
T ss_pred EEEEeC
Confidence 776654
No 128
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.42 E-value=6.6e-13 Score=106.94 Aligned_cols=67 Identities=28% Similarity=0.391 Sum_probs=52.0
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCC----CCcEEEEEEEEeCCcceEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP----ADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~A~N~~G~~~~ 722 (808)
++|.|.+ .|+|.|.|+|+|||.+|.......+.......+|.|..+.. +|+|.|+|.|+|.+|.+.+
T Consensus 1 i~l~C~~--~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEA--KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeC--cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4799999 89999999999999998654322232223334788888754 7999999999999998765
No 129
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.41 E-value=2.2e-12 Score=111.47 Aligned_cols=96 Identities=22% Similarity=0.399 Sum_probs=72.7
Q ss_pred CCeeeecCCCcccc---cCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEe--e--CcEEEEEECCCC-CCC
Q psy2145 503 RPVFTKPLQNIDAV---EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKH--D--FGYVAMDLSHVR-AED 573 (808)
Q Consensus 503 ~P~f~~~~~~~~~v---~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~--~--~~~~~L~I~~v~-~~D 573 (808)
+|.|..+......+ ..|..+.|.|.+ .|.|.+.++|+|||..|... .++.... . .....|.|.++. .+|
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a--~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQA--QGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEEC--cccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 55665554422122 256899999999 89999999999999998743 3554321 1 113579999997 589
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 574 EGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 574 ~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
.|.|+|.|.|..|....++.|.|...|
T Consensus 82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 82 YALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 999999999999999999999998754
No 130
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.41 E-value=7.7e-13 Score=108.38 Aligned_cols=73 Identities=27% Similarity=0.480 Sum_probs=58.2
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCE---E--ccCCC---cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGV---E--LKMGS---RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~---~--l~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
|+.++|.|.+ .|.|.|.|.|+|++. . +.... ++.. ....+|.|.++..+|+|.|+|.|.|.+|.+..
T Consensus 1 G~~v~l~C~~--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDV--TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV---TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeec--cccCCCcEEEEecCCCCcceeecCCcccCCEEE---ccccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 7899999999 899999999999742 1 11111 1111 12358999999999999999999999999999
Q ss_pred EEEEEE
Q psy2145 723 STSLKV 728 (808)
Q Consensus 723 s~~l~V 728 (808)
++.|.|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 999876
No 131
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.41 E-value=8.3e-13 Score=104.52 Aligned_cols=71 Identities=27% Similarity=0.487 Sum_probs=59.5
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
+.|.|.+ .|.|.|.|.|+|++..+..+. .......+ .|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 1 ~~L~C~~--~G~P~P~v~W~k~~~~~~~~~-~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIA--EGLPTPEVHWDRIDGPLSPNR-TKKLNNNK--TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEe--eEecCCeEEEEECCcCCCCCc-eeEEcCCC--EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 4799999 899999999999998876543 22332333 79999999999999999999999999999888873
No 132
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.41 E-value=8e-13 Score=106.58 Aligned_cols=71 Identities=18% Similarity=0.351 Sum_probs=57.4
Q ss_pred ccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-E
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-S 723 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s 723 (808)
..+.+|+.+.|.|.+ .|.|.| .|.|+|||.+|... +. ...+.|.|..+ .|+|.|.|.|+|.+|...+ .
T Consensus 8 ~~v~~G~~v~l~C~a--~G~P~P~~I~W~k~g~~l~~~--~~----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~ 77 (81)
T cd05749 8 LSVTANTPFNLTCQA--VGPPEPVEILWWQGGSPLGDP--PA----PSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRT 77 (81)
T ss_pred eEEcCCCCEEEEEEe--eeecCCeEEEEEECCEECCCC--CC----CCCCEEEEccc--cCCeEEEEEEEeccCcEEeee
Confidence 568899999999999 899999 79999999998641 11 11247999887 4889999999999997765 4
Q ss_pred EEE
Q psy2145 724 TSL 726 (808)
Q Consensus 724 ~~l 726 (808)
+.|
T Consensus 78 a~~ 80 (81)
T cd05749 78 GTV 80 (81)
T ss_pred EEe
Confidence 444
No 133
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.40 E-value=8.6e-13 Score=103.18 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=55.5
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
++|.|.+ .|.|.|.+.|+|||.++..+ .++.. ++. +|.|.++..+|+|.|+|.|+|..+.......++
T Consensus 1 ~~l~c~v--~g~P~P~v~W~kdg~~l~~~~~~~~~--~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKV--KAFPAPEVIWLKDGLPAAEKCSRYHV--DGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeE--EEcCCCeEEEEECCEECCCCCcEEEe--CCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 4799999 79999999999999998865 34432 332 799999999999999999999977666655544
No 134
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.40 E-value=1.5e-12 Score=104.55 Aligned_cols=66 Identities=33% Similarity=0.572 Sum_probs=51.0
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCC--CcEEEEEeCCEEEEEEccCCC----CCcEEEEEEEEeCCcceEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMG--SRFHVQHDFGYVTLDITKCVP----ADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~A~N~~G~~~~s 723 (808)
+.|.|.+ .|.|.|+|+|+|||.++... .++.+...++ +|.|..+.. .|.|.|+|.|+|.+|.+.+.
T Consensus 1 ~~l~C~a--~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEA--KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeC--cccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 4799999 89999999999999998543 3444333333 677777664 37899999999999987664
No 135
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.39 E-value=9.8e-13 Score=109.84 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=64.2
Q ss_pred cccCCceEEEEEEEeeCC-----CCCeEEEEEECCEEccCC--CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 647 EIMEGQSAHYDCRVVPVG-----DPTMRFEWFVNGVELKMG--SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g-----~P~p~i~W~~~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
.+.+|+.+.|.|.+ .| .|.|.|.|||+|..+... .+.++...++ .|.|.++..+|+|.|+|.|+|..|.
T Consensus 10 ~v~~G~~~~L~C~~--~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 10 YVLEGEPVVIKCPL--FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEecCCCeEEECCC--CCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCcc
Confidence 46789999999998 78 689999999999765421 2233333333 8999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy2145 720 AVSSTSLKV 728 (808)
Q Consensus 720 ~~~s~~l~V 728 (808)
.+.++.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 999998876
No 136
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.39 E-value=2e-12 Score=104.20 Aligned_cols=72 Identities=26% Similarity=0.547 Sum_probs=58.4
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCC----CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMG----SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
+.|.|.+. .+.|.+.+.|||||+.|... .++.+.......+|.|.++..+|+|.|+|.|+|.+|..+.++.+
T Consensus 1 ~~L~C~a~-~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~ 76 (76)
T cd05895 1 LVLRCETV-SEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV 76 (76)
T ss_pred CEEEEecc-cCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence 46999983 35788999999999998643 23444444556789999999999999999999999999888764
No 137
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=2e-12 Score=103.84 Aligned_cols=71 Identities=24% Similarity=0.495 Sum_probs=58.8
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecC---CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLE---DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+.|.|.+ .|.|.|.|+|+|+|.... ...++.....++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 a~l~C~~--~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAA--TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeec--ccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999 899999999999986432 233454444444 7999999999999999999999999999999987
No 138
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=2.8e-12 Score=105.78 Aligned_cols=78 Identities=17% Similarity=0.340 Sum_probs=62.4
Q ss_pred CceEEEEEEeeCCCCCc--EEEEEECCEecCCCC---CeEE-EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTL--KVEWFRNEKPLEDSS---RITT-KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~--~v~W~k~g~~l~~~~---~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
+++.|.|.+ .|.|.| .+.|+|||++|.... ++.. ........|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 e~~~L~C~~--~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHA--SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEE--ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 468999999 788877 679999999886432 2221 11122337999999999999999999999999999999
Q ss_pred EEEEec
Q psy2145 594 MKIKTK 599 (808)
Q Consensus 594 l~V~~~ 599 (808)
|.|..+
T Consensus 79 l~V~~p 84 (85)
T cd04970 79 LIVRGP 84 (85)
T ss_pred EEEECC
Confidence 999875
No 139
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.38 E-value=3.2e-12 Score=106.99 Aligned_cols=83 Identities=28% Similarity=0.474 Sum_probs=61.1
Q ss_pred CeEEeecCCCc--cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCC-CCcEEEEEE
Q psy2145 636 PIFTQLLTGTS--EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP-ADSGVYMCK 712 (808)
Q Consensus 636 P~~~~~~~~~~--~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~ 712 (808)
|.|...+.+.. ....|+.+.|.|.+ .|+|.|.|+|+|+|..+.......+....+ .|.|.++.. +|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~--~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~ 77 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRA--RGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCL 77 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEee--eEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEE
Confidence 44555544311 13345789999999 799999999999999985433333333333 789988874 899999999
Q ss_pred EEeCCcceEE
Q psy2145 713 AINRAGEAVS 722 (808)
Q Consensus 713 A~N~~G~~~~ 722 (808)
|+|.+|.+.+
T Consensus 78 a~N~~G~~~S 87 (91)
T cd04967 78 ASNIVGTVLS 87 (91)
T ss_pred EEcCCCEEEe
Confidence 9999998765
No 140
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.38 E-value=2.5e-12 Score=103.05 Aligned_cols=73 Identities=33% Similarity=0.653 Sum_probs=61.7
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEE-CCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFR-NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|.|.|.+.|++ ++..+....++..... + +|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~v~W~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKA--RGDPEPAIHWISPDGKLISNSSRTLVYDN-G--TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEc--cCcCCCEEEEEeCCCEEecCCCeEEEecC-C--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7889999999 899999999997 6777766655544333 3 6999999999999999999999999988888765
No 141
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.38 E-value=7e-12 Score=104.67 Aligned_cols=85 Identities=24% Similarity=0.385 Sum_probs=67.1
Q ss_pred CCeEEeecCceeecCCC---eEEEEEEEeecCCCCeEEEEeeCCEEccC-CCceEEEecCceEEEEEccCC-CCCcEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQ---RAHFECRLIPVSDNTMKVEWFHNNVPIKS-GSRFTETNNFGFVALDIMQCL-PEDSGVYT 257 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~---~v~L~C~~~~~~~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~ 257 (808)
+|.|...|.++.+.++. .+.|.|.+ .|.|.+.|+|+|++..+.. ..++... ++ .|.|.++. .+|+|.|+
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a--~G~P~P~i~W~k~~~~i~~~~~~~~~~--~g--~L~I~~~~~~~D~G~Y~ 74 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRA--RANPFPIYKWRKNNLDIDLTNDRYSMV--GG--NLVINNPDKYKDAGRYV 74 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcC--ccCCCCEEEEEECCEEccCCCCeEEEE--CC--EEEECcCCcCCCCEEEE
Confidence 47788888887666544 89999999 6899999999999999853 3444433 23 79999985 69999999
Q ss_pred EEEEeCceeEEE-EEEE
Q psy2145 258 CRAVNALGQAVT-SGNL 273 (808)
Q Consensus 258 C~a~n~~g~~~~-~~~l 273 (808)
|.|+|..|...+ .+.|
T Consensus 75 C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 75 CIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEeCcceEEEccEEE
Confidence 999999998765 4444
No 142
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.37 E-value=3e-12 Score=103.19 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=62.4
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
+.|.|.+ .|.|.|.+.|+|+++.+..+.+..+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|+.
T Consensus 1 ~~L~C~v--~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHA--EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEe--eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 4799999 89999999999999998765433333223333799999999999999999999999999999999863
No 143
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.37 E-value=2.4e-12 Score=107.45 Aligned_cols=76 Identities=26% Similarity=0.605 Sum_probs=64.3
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEec--------CCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPL--------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 590 (808)
|+.+.|.|.+ .|.|.|.+.|+|+|..+ ....++.+... + .|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 G~~v~L~C~~--~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~-~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEA--TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT-G--DLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEEC--CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC-C--eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 7899999998 89999999999998653 22445555433 2 6999999999999999999999999999
Q ss_pred EEEEEEEec
Q psy2145 591 TASMKIKTK 599 (808)
Q Consensus 591 s~~l~V~~~ 599 (808)
++.|.|...
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 999999874
No 144
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.37 E-value=2.6e-12 Score=103.19 Aligned_cols=66 Identities=30% Similarity=0.472 Sum_probs=52.5
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEcc--CCCcEEEEEeCCEEEEEEccCCC----CCcEEEEEEEEeCCcceEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELK--MGSRFHVQHDFGYVTLDITKCVP----ADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~--~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~A~N~~G~~~~s 723 (808)
+.|.|.+ .|+|.|.|+|+|||..+. .+.++.+..+++ +|.|..+.. +|+|.|+|.|+|.+|.+.+.
T Consensus 1 ~~l~C~~--~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEA--KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEec--cccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4799999 899999999999999874 455666544443 788887642 47999999999999987665
No 145
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.37 E-value=2.9e-12 Score=100.98 Aligned_cols=69 Identities=32% Similarity=0.636 Sum_probs=58.8
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+.|.|.+ .|.|.|.+.|+|++..+.. .++..... + .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~--~g~P~p~v~W~k~~~~~~~-~~~~~~~~-~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEV--GGDPVPTVLWRKEDGELPK-GRAEILDD-K--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEEC--ccCCCCEEEEEECCccCCC-CcEEEeeC-C--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 5799999 8999999999999887754 34554432 3 7999999999999999999999999999988875
No 146
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.37 E-value=1.1e-11 Score=113.01 Aligned_cols=116 Identities=20% Similarity=0.272 Sum_probs=83.6
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
+|.|.+++.+|+|.|.|.+.+..|.....++|.|. .+|.+..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~--------------------------------------~~P~v~~ 43 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS--------------------------------------EPPRVRL 43 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe--------------------------------------cCCceEE
Confidence 69999999999999999999988888888888884 4666766
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEcc------CCCce--EEEecCce----EEEEEccCCCCCcEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIK------SGSRF--TETNNFGF----VALDIMQCLPEDSGV 255 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~------~~~~~--~~~~~~~~----~~L~I~~~~~~D~G~ 255 (808)
.+......+|+.+.|.|.+.+ ..|. +.|.|+++|.... .+... .....+|. ..|.|......+.+.
T Consensus 44 ~~~~~~~~~~~~~~L~C~a~g-~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ 122 (139)
T cd05771 44 SLEKLVSMIEEPQTLICHIAG-YYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGAT 122 (139)
T ss_pred eCCCceeecCCcEEEEEEECC-CCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCE
Confidence 666655558999999999953 2454 6999999986422 11110 11122222 357776655556779
Q ss_pred EEEEEEeC
Q psy2145 256 YTCRAVNA 263 (808)
Q Consensus 256 Y~C~a~n~ 263 (808)
|+|++.+.
T Consensus 123 ytC~V~H~ 130 (139)
T cd05771 123 YTCRVSHV 130 (139)
T ss_pred EEEEEEcC
Confidence 99999875
No 147
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.37 E-value=6.6e-12 Score=106.65 Aligned_cols=88 Identities=22% Similarity=0.380 Sum_probs=70.1
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCc-EEEEEECCEecCCC--CCeEEEee----CcEEEEEECCCCCC-CC
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL-KVEWFRNEKPLEDS--SRITTKHD----FGYVAMDLSHVRAE-DE 574 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~-~v~W~k~g~~l~~~--~~~~~~~~----~~~~~L~I~~v~~~-D~ 574 (808)
||.+..+ ... .+.+|+.+.|.|.+ .|.|.| .|.|++++..+... .++.+... +...+|.|.++..+ |.
T Consensus 2 pp~i~~~-~~~-~~~~G~~v~L~C~~--~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~ 77 (98)
T cd05758 2 PPIITSE-ATQ-YAILGDKGRVECFI--FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQ 77 (98)
T ss_pred CCeEcCC-CcE-EEeCCCcEEEEEEE--cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccc
Confidence 5666543 333 57899999999999 899999 69999999988753 46666543 22357999999995 59
Q ss_pred EEEEEEEEeCCeeEEEEEEE
Q psy2145 575 GIYICKATNALGEAVTTASM 594 (808)
Q Consensus 575 G~Y~C~a~N~~G~~~~s~~l 594 (808)
|.|+|.|.|..|.+..++.|
T Consensus 78 G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 78 TSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred eeEEEEEEcCCCcccEEEEe
Confidence 99999999999999888776
No 148
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.36 E-value=2.6e-12 Score=105.57 Aligned_cols=78 Identities=24% Similarity=0.510 Sum_probs=64.8
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
.+..|+.+.|.|.+ .|.|.|.+.|+|+|..+........ .....+|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 5 ~~~~G~~v~L~C~~--~g~p~p~i~W~k~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 5 ARPVGSSVRLKCVA--SGNPRPDITWLKDNKPLTPTEIGES--RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eccCCCeEEEEEEe--eEeCCCcEEEEECCcCCcCCcccee--cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 46779999999999 7999999999999998865543322 2233589999999999999999999999998888777
Q ss_pred EE
Q psy2145 595 KI 596 (808)
Q Consensus 595 ~V 596 (808)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 64
No 149
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.36 E-value=8.6e-12 Score=103.72 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=68.0
Q ss_pred CccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCC--CcEEEEEe----CCEEEEEEccCCCCC-cEEEEEEEEeC
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMG--SRFHVQHD----FGYVTLDITKCVPAD-SGVYMCKAINR 716 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~--~~~~~~~~----~~~~~L~I~~v~~~D-~G~Y~C~A~N~ 716 (808)
...+.+|+.++|.|.+ .++|+| .|.|.+++..|..+ .+|.+... +..++|+|.++...| .|.|.|.|.|.
T Consensus 10 s~~~~~G~~~~L~C~~--~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 10 VQYAVRGERGKVKCFI--GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred eEEEeCCCcEEEEEEE--ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence 3568899999999999 688876 68999998888653 68887664 468899999998877 89999999999
Q ss_pred CcceEEEEEE
Q psy2145 717 AGEAVSSTSL 726 (808)
Q Consensus 717 ~G~~~~s~~l 726 (808)
+|.+...+.|
T Consensus 88 ~G~d~~~i~L 97 (98)
T cd05898 88 FGSGTAIIQL 97 (98)
T ss_pred CccceEEEEe
Confidence 9999988877
No 150
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.36 E-value=2.9e-12 Score=105.47 Aligned_cols=76 Identities=24% Similarity=0.391 Sum_probs=61.3
Q ss_pred CceEEEEEEEeeCCC--CCeEEEEEECCEEccCCCc----EE-EEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 651 GQSAHYDCRVVPVGD--PTMRFEWFVNGVELKMGSR----FH-VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 651 G~~v~l~C~v~~~g~--P~p~i~W~~~g~~l~~~~~----~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
|+.++|.|.+ .|+ |.|.|.|+++|+.+..... .. .......++|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 1 Ge~~~L~C~~--~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTV--LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEE--EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 7899999999 688 8999999998876643211 11 1112235699999999999999999999999999999
Q ss_pred EEEEE
Q psy2145 724 TSLKV 728 (808)
Q Consensus 724 ~~l~V 728 (808)
+.|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 99877
No 151
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.36 E-value=3.4e-12 Score=101.98 Aligned_cols=70 Identities=29% Similarity=0.623 Sum_probs=58.4
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecC--CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeE-EEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLE--DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA-VTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~s~~l~V 596 (808)
++|.|.+ .|.|.|.|+|+|++.++. ...++.... .+ .|.|.++..+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 1 a~l~C~~--~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAA--SGNPDPEITWFKDFLPVDTTSNGRIKQLR-SG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEE--eEecCCEEEEEECCEECccCCCCCEEEcC-Cc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999 899999999999999987 345555432 33 69999999999999999999999985 66677776
No 152
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.35 E-value=2.3e-12 Score=107.31 Aligned_cols=76 Identities=22% Similarity=0.461 Sum_probs=59.0
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECC----EecCCC-CCe-EEEe-------eCcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNE----KPLEDS-SRI-TTKH-------DFGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g----~~l~~~-~~~-~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
|+.++|.|.+ .|.|.|.|+|+|++ ..+... ... .... .+....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~l~C~v--~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEE--eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 6789999999 89999999999963 333221 111 1111 1222479999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy2145 586 GEAVTTASMKI 596 (808)
Q Consensus 586 G~~~~s~~l~V 596 (808)
|...+++.|.|
T Consensus 79 G~~~~sa~L~V 89 (90)
T cd04974 79 GPSHHSAWLTV 89 (90)
T ss_pred CcccCCEEEEe
Confidence 99999999987
No 153
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.34 E-value=5.4e-12 Score=101.59 Aligned_cols=71 Identities=23% Similarity=0.526 Sum_probs=58.9
Q ss_pred eEEEEEEeeCC-CCCcEEEEEECCEecCCCCCeE---EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 522 AHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRIT---TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 522 v~l~C~v~~~g-~P~~~v~W~k~g~~l~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
+.|.|.+ .| .|.|.+.|+|+|+++..+.+.. +........|.|.++..+|+|.|+|.|.|..|.+..++.+
T Consensus 1 ~~l~C~~--~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~ 75 (75)
T cd05750 1 LVLKCEA--TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTANV 75 (75)
T ss_pred CEEEEEc--cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence 4799999 67 9999999999999998665432 3333455689999999999999999999999998887653
No 154
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.33 E-value=6.7e-12 Score=104.71 Aligned_cols=76 Identities=22% Similarity=0.458 Sum_probs=60.0
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEEC----CEecCCCCC--eEEEee-------CcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRN----EKPLEDSSR--ITTKHD-------FGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~----g~~l~~~~~--~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
|+.+.|.|.+ .|.|.|.|+|+|+ |..+..... ...... .....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~L~C~~--~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKV--YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEE--ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 7889999999 8999999999984 555543322 121111 122479999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy2145 586 GEAVTTASMKI 596 (808)
Q Consensus 586 G~~~~s~~l~V 596 (808)
|....++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999999987
No 155
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.33 E-value=4.9e-12 Score=100.58 Aligned_cols=70 Identities=29% Similarity=0.501 Sum_probs=58.4
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+.|.|.+ .|.|.|.+.|+|++..+... +...... ...|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~--~g~P~p~v~W~k~~~~~~~~-~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIA--EGLPTPEISWIKIGGELPAD-RTKFENF--NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEe--eEecCCeEEEEECCeECCCC-ceeEecC--CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 5799999 89999999999999887654 2222222 237999999999999999999999999999988877
No 156
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.33 E-value=7.6e-12 Score=103.79 Aligned_cols=82 Identities=30% Similarity=0.490 Sum_probs=65.5
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec-cCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
.|.++ .+.+|+++.|.|.+.. +.|.+.|.|+|+|..+.. +.++.+.. . .+|.|.++..+|+|.|+|.|.|..|.
T Consensus 2 ~p~~~-~~~~G~~v~l~C~~~~-g~p~p~i~W~k~g~~~~~~~~~~~~~~-~--~~L~I~~~~~~D~G~Y~C~a~N~~G~ 76 (86)
T cd05724 2 EPSDT-QVAVGEMAVLECSPPR-GHPEPTVSWRKDGQPLNLDNERVRIVD-D--GNLLIAEARKSDEGTYKCVATNMVGE 76 (86)
T ss_pred CCccE-EEeCCCCEEEEEECCC-CCCCCEEEEEECCEECCCCCCCEEEcc-C--CEEEEeECCcccCEEEEEEEEeccCc
Confidence 46677 8899999999999832 578889999999999886 44555443 2 27999999999999999999999997
Q ss_pred eEE-EEEEE
Q psy2145 134 AEV-QATLQ 141 (808)
Q Consensus 134 ~~~-~~~l~ 141 (808)
..+ .+.|.
T Consensus 77 ~~s~~~~l~ 85 (86)
T cd05724 77 RESAAARLS 85 (86)
T ss_pred eeeeeEEEE
Confidence 644 44443
No 157
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.32 E-value=6.6e-12 Score=101.25 Aligned_cols=78 Identities=22% Similarity=0.505 Sum_probs=59.9
Q ss_pred eeecCCCcccccCCCceEEEEEEeeCCCCCc-EEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeC
Q psy2145 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL-KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584 (808)
Q Consensus 506 f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 584 (808)
|...+.++ .+.+|+.+.|.|.+ .|.|.| .|.|+|||.++... .. ... ..|.|.++ .|+|.|.|.|.|.
T Consensus 1 f~~~P~~~-~v~~G~~v~l~C~a--~G~P~P~~I~W~k~g~~l~~~--~~--~~~--s~L~i~~~--~d~g~Y~C~A~N~ 69 (81)
T cd05749 1 FTVEPEDL-SVTANTPFNLTCQA--VGPPEPVEILWWQGGSPLGDP--PA--PSP--SVLNVPGL--NETSKFSCEAHNA 69 (81)
T ss_pred CcCCCCce-EEcCCCCEEEEEEe--eeecCCeEEEEEECCEECCCC--CC--CCC--CEEEEccc--cCCeEEEEEEEec
Confidence 34445554 68999999999999 899999 79999999998641 11 112 27999887 4889999999999
Q ss_pred CeeEEE-EEEE
Q psy2145 585 LGEAVT-TASM 594 (808)
Q Consensus 585 ~G~~~~-s~~l 594 (808)
.|...+ .++|
T Consensus 70 ~G~~~s~~a~~ 80 (81)
T cd05749 70 KGVTTSRTGTV 80 (81)
T ss_pred cCcEEeeeEEe
Confidence 997665 4443
No 158
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.31 E-value=1.4e-11 Score=104.01 Aligned_cols=85 Identities=27% Similarity=0.407 Sum_probs=66.4
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc--eEEEecCceEEEEEccC-----CCCCcEEEEE
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR--FTETNNFGFVALDIMQC-----LPEDSGVYTC 258 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~I~~~-----~~~D~G~Y~C 258 (808)
|...|.+..+.+|+++.|.|.+ .+.|.+.|.|+|||..+..... +....+ + +|.|.++ ..+|.|.|+|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~--~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSA--EGEPPPKIEWKKDGVLLNLVSDERRQQLPN-G--SLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeec--ccCCCCEEEEEECCeECccccCcceEEccC-C--eEEEeeeeccCCCCCcCEEEEE
Confidence 5567788888999999999999 6889999999999999975443 333333 3 4666665 5899999999
Q ss_pred EEEeC-ceeEE-EEEEEEE
Q psy2145 259 RAVNA-LGQAV-TSGNLLV 275 (808)
Q Consensus 259 ~a~n~-~g~~~-~~~~l~V 275 (808)
.|.|. .|... ..+.|.|
T Consensus 77 ~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 77 VAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEECCccCcEEEeeeEEeC
Confidence 99999 99874 4566654
No 159
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.31 E-value=2.1e-11 Score=101.88 Aligned_cols=86 Identities=24% Similarity=0.430 Sum_probs=66.6
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee-CCEEccCCCceEEEe-cCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVPIKSGSRFTETN-NFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
+.+.|.+..+..|+++.|.|.+. |.|. .+.|++ +|..+....++.... .....+|.|.+++.+|+|.|+|.|.|.
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~--G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVI--GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeE--eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcC
Confidence 44567788999999999999995 5664 899998 677776655554433 335568999999999999999999998
Q ss_pred cee-EEEEEEEE
Q psy2145 264 LGQ-AVTSGNLL 274 (808)
Q Consensus 264 ~g~-~~~~~~l~ 274 (808)
.|. ...++.|.
T Consensus 80 ~g~~~~~sv~l~ 91 (92)
T cd04977 80 KGTESEATVNLK 91 (92)
T ss_pred CCCcceeEEEEE
Confidence 764 45566654
No 160
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.31 E-value=4.9e-11 Score=108.73 Aligned_cols=116 Identities=16% Similarity=0.276 Sum_probs=81.5
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeec
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL 642 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~ 642 (808)
+|.|.+++.+|+|.|.|.+.|..|.....+.|.|..+|. +....
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~------------------------------------v~~~~ 45 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPR------------------------------------VRLSL 45 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCc------------------------------------eEEeC
Confidence 699999999999999999999999999999999986543 32222
Q ss_pred CCCccccCCceEEEEEEEeeCCC-CC-eEEEEEECCEEccC------CCc---EEEEEeCC---EEEEEEccCCCCCcEE
Q psy2145 643 TGTSEIMEGQSAHYDCRVVPVGD-PT-MRFEWFVNGVELKM------GSR---FHVQHDFG---YVTLDITKCVPADSGV 708 (808)
Q Consensus 643 ~~~~~v~~G~~v~l~C~v~~~g~-P~-p~i~W~~~g~~l~~------~~~---~~~~~~~~---~~~L~I~~v~~~D~G~ 708 (808)
.. ....+|+.+.|.|.+ .|. |. +.|.|++||..... +.. .....++. .+.|.|..-..++.+.
T Consensus 46 ~~-~~~~~~~~~~L~C~a--~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ 122 (139)
T cd05771 46 EK-LVSMIEEPQTLICHI--AGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGAT 122 (139)
T ss_pred CC-ceeecCCcEEEEEEE--CCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCE
Confidence 21 233478999999999 674 54 59999999865221 111 11111222 2567777655556779
Q ss_pred EEEEEEeCC
Q psy2145 709 YMCKAINRA 717 (808)
Q Consensus 709 Y~C~A~N~~ 717 (808)
|+|.+.+..
T Consensus 123 ytC~V~H~~ 131 (139)
T cd05771 123 YTCRVSHVS 131 (139)
T ss_pred EEEEEEcCC
Confidence 999998764
No 161
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.30 E-value=8.9e-12 Score=104.07 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=63.4
Q ss_pred cccCCCceEEEEEEeeCC-----CCCcEEEEEECCEecCCC--CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 515 AVEEGKNAHFSCRLIPVG-----DPTLKVEWFRNEKPLEDS--SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g-----~P~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
.+.+|+.+.|.|.+ .| .|.+.|.|||+|..+... ....+...++ .|.|.++..+|+|.|+|.+.|..|.
T Consensus 10 ~v~~G~~~~L~C~~--~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 10 YVLEGEPVVIKCPL--FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEecCCCeEEECCC--CCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCcc
Confidence 47899999999998 67 689999999999765421 1222233333 7999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2145 588 AVTTASMKI 596 (808)
Q Consensus 588 ~~~s~~l~V 596 (808)
.+.++.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 999988875
No 162
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.30 E-value=1.4e-11 Score=96.33 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=55.7
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+.|+|.+ .|.|.|++.|+|||.++..+ .++.. +++ +|.|.++..+|+|.|+|.|.|..+.......++.
T Consensus 1 ~~l~c~v--~g~P~P~v~W~kdg~~l~~~~~~~~~--~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKV--KAFPAPEVIWLKDGLPAAEKCSRYHV--DGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeE--EEcCCCeEEEEECCEECCCCCcEEEe--CCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 4799999 89999999999999998765 33322 233 7999999999999999999999776666655544
No 163
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.29 E-value=8e-12 Score=101.43 Aligned_cols=70 Identities=26% Similarity=0.421 Sum_probs=54.2
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEc--------cCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce-EEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVEL--------KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSST 724 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~s~ 724 (808)
|+|.|.+ .|.|.|.|.|+|++... ..+.++.+..+ .+|.|.++..+|+|.|+|.|.|.+|.+ +.++
T Consensus 1 v~l~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSA--EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeC--eEeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 5799999 79999999999964321 12345554332 379999999999999999999999987 5566
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.|.|
T Consensus 76 ~l~~ 79 (79)
T cd05734 76 VLTV 79 (79)
T ss_pred EEeC
Confidence 6654
No 164
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.29 E-value=3.1e-11 Score=99.92 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=67.5
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-eCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
.+.+|+.++|.|.+ .|.|.+.|.|+++|..+.....+.... ......|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 5 ~~~~G~~~~l~C~~--~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 5 AVPAGSTVRLKCPA--SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred EecCCCcEEEEEEc--CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 46689999999999 799999999999999987665544322 234568999999999999999999999999998888
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 865
No 165
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.28 E-value=3e-11 Score=101.03 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=62.4
Q ss_pred CeeeecCCCccc--ccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCC-CCCEEEEEE
Q psy2145 504 PVFTKPLQNIDA--VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA-EDEGIYICK 580 (808)
Q Consensus 504 P~f~~~~~~~~~--v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~ 580 (808)
|.|+..+.+... ...|..+.|.|.+ .|+|.|.|+|+|+|..+............+ .|.|.++.. +|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~--~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~ 77 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRA--RGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCL 77 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEee--eEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEE
Confidence 667777666521 2345679999999 799999999999999985433222233334 689988874 899999999
Q ss_pred EEeCCeeEEE
Q psy2145 581 ATNALGEAVT 590 (808)
Q Consensus 581 a~N~~G~~~~ 590 (808)
|.|..|...+
T Consensus 78 a~N~~G~~~S 87 (91)
T cd04967 78 ASNIVGTVLS 87 (91)
T ss_pred EEcCCCEEEe
Confidence 9999998765
No 166
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.28 E-value=9e-12 Score=99.84 Aligned_cols=68 Identities=24% Similarity=0.464 Sum_probs=53.6
Q ss_pred ccccCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+.+|++++|.|.+ .|.|. +.+.|||||+.|..+ ..+|.|.++ .+|+|.|+|.|.|. ..+..+
T Consensus 10 ~~v~~G~~V~L~C~~--~~~p~~~~~~W~kng~~l~~~----------~~~l~i~~~-~~dsG~Y~C~a~~~--~~S~~v 74 (78)
T cd05752 10 TTIFQGEKVTLTCNG--FNSPEQNSTQWYHNGKLLETT----------TNSYRIRAA-NNDSGEYRCQTQGS--SLSDPV 74 (78)
T ss_pred eEeeCCCCEEEEEeC--CCCCCCccEEEEECCEEeecc----------CCeEEEeec-ccCCEEeEEECCCC--cCCCCE
Confidence 468899999999999 78786 479999999988421 127999999 99999999999986 444444
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.|+|
T Consensus 75 ~l~V 78 (78)
T cd05752 75 HLEV 78 (78)
T ss_pred EEeC
Confidence 4443
No 167
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.28 E-value=2.6e-11 Score=99.26 Aligned_cols=77 Identities=25% Similarity=0.451 Sum_probs=59.2
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCC----cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCc--ceEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS----RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG--EAVSST 724 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G--~~~~s~ 724 (808)
|++++|.|.+ .|.|.+.|.|++.|+...... +..+......++|.|.+++.+|+|.|+|.|+|..+ ..+.++
T Consensus 1 Ge~~~l~C~~--~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIV--QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEE--ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 7899999999 799999999999887543211 11111122356899999999999999999999987 667777
Q ss_pred EEEEE
Q psy2145 725 SLKVK 729 (808)
Q Consensus 725 ~l~V~ 729 (808)
.|+|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 77774
No 168
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.26 E-value=2.2e-11 Score=99.67 Aligned_cols=73 Identities=19% Similarity=0.492 Sum_probs=57.1
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCE---e--cCCCC---CeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEK---P--LEDSS---RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~---~--l~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 590 (808)
|+.+.|.|.+ .|.|.|.|+|+|++. . +.... ++... ....|.|.++..+|+|.|+|.|.|..|....
T Consensus 1 G~~v~l~C~~--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDV--TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT---NIGQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeec--cccCCCcEEEEecCCCCcceeecCCcccCCEEEc---cccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 7899999999 899999999999742 1 11111 11111 2237999999999999999999999999999
Q ss_pred EEEEEE
Q psy2145 591 TASMKI 596 (808)
Q Consensus 591 s~~l~V 596 (808)
.+.|.|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 988875
No 169
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.26 E-value=2.2e-11 Score=100.45 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=61.0
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+.++|.|.+. .+.|.+.|.|+++|..+.... ...+ ..|.|.++..+|+|.|+|.|.|.+|....++.
T Consensus 11 ~~v~~G~~v~L~C~~~-~~~~~~~i~W~~~~~~~~~~~----~~~~--~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 83 (85)
T cd05754 11 QEVRPGADVSFICRAK-SKSPAYTLVWTRVGGGLPSRA----MDFN--GILTIRNVQLSDAGTYVCTGSNMLDTDEATAT 83 (85)
T ss_pred eEEcCCCCEEEEEEcC-CCCCCcEEEEEECCCcCCCcc----cccC--CEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence 4678999999999983 247899999999997764321 1112 37999999999999999999999999999887
Q ss_pred E
Q psy2145 726 L 726 (808)
Q Consensus 726 l 726 (808)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 6
No 170
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.26 E-value=3.2e-11 Score=101.13 Aligned_cols=80 Identities=20% Similarity=0.402 Sum_probs=63.9
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE--------CCEEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV--------NGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~--------~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
..+.+|++++|.|.+ .|.|.+.|.|++ ++.....+.|+.+..+ .+..+|.|.++..+|+|.|+|.|.+.
T Consensus 7 v~v~eG~~v~L~C~~--~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 7 VTVVEGGTANLTCRV--DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred EEEecCCcEEEEEEE--ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 578999999999999 799999999986 3333334567776443 35579999999999999999999996
Q ss_pred CcceEEEEEEEE
Q psy2145 717 AGEAVSSTSLKV 728 (808)
Q Consensus 717 ~G~~~~s~~l~V 728 (808)
.+. +.++.|+|
T Consensus 85 ~~~-~~~~~l~v 95 (95)
T cd07701 85 PVK-TSKAYLTV 95 (95)
T ss_pred cCc-cEEEEEEC
Confidence 444 77787775
No 171
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.25 E-value=3.8e-11 Score=96.66 Aligned_cols=71 Identities=24% Similarity=0.523 Sum_probs=56.4
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCC----CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS----SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
+.|+|.+. .+.|.+.+.|+|||+.|... .++..........|.|.++..+|+|.|+|.|+|..|..+.++.
T Consensus 1 ~~L~C~a~-~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETV-SEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecc-cCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 47999983 35788999999999998643 2234433344568999999999999999999999999888765
No 172
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.25 E-value=1.1e-11 Score=102.14 Aligned_cols=74 Identities=23% Similarity=0.394 Sum_probs=60.4
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEc--cCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL--KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
.+..+.+|+.+.|.|.. |.|.|.+.|.|++|+.++ ..+.|..+....| .|.|.+|+.+|+|.|+|.|+|.++..
T Consensus 11 ~~~~v~eG~~~~L~C~p-P~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDP-PPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCC-CCCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 34568899999999986 589999999999999875 3344544444334 79999999999999999999997655
No 173
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.25 E-value=1.9e-11 Score=101.30 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=63.4
Q ss_pred ccccCCceEEEEEEEee---CCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 646 SEIMEGQSAHYDCRVVP---VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~---~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
..+.+|+.+.|.|.... ..+|.|.|.|||||++|....+... .+ ..|.|.++..+|+|.|+|.|.|.+|....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~--~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KG--SKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cC--CEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 35778999999998731 1236889999999999986654432 22 38999999999999999999999998887
Q ss_pred EEEEEEE
Q psy2145 723 STSLKVK 729 (808)
Q Consensus 723 s~~l~V~ 729 (808)
+++..+.
T Consensus 81 ~~t~t~~ 87 (92)
T cd05757 81 NVTRTIS 87 (92)
T ss_pred EEEEEEE
Confidence 7766554
No 174
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.24 E-value=2.9e-11 Score=97.36 Aligned_cols=65 Identities=31% Similarity=0.620 Sum_probs=51.7
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCC--CCeEEEeeCcEEEEEECCCCC----CCCEEEEEEEEeCCeeEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS--SRITTKHDFGYVAMDLSHVRA----EDEGIYICKATNALGEAVT 590 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~N~~G~~~~ 590 (808)
+.|.|.+ .|.|.|.|+|+|||..+... .++.+....+ .|.|.++.. +|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~--~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEA--KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG--TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeC--cccCCCeEEEEECCeECCCCCCCCEEEeCCCC--EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 5799999 89999999999999998643 3444433344 688887754 7999999999999998665
No 175
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.24 E-value=5.4e-11 Score=95.50 Aligned_cols=66 Identities=27% Similarity=0.545 Sum_probs=52.3
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecC--CCCCeEEEeeCcEEEEEECCCC----CCCCEEEEEEEEeCCeeEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLE--DSSRITTKHDFGYVAMDLSHVR----AEDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~--~~~~~~~~~~~~~~~L~I~~v~----~~D~G~Y~C~a~N~~G~~~~s 591 (808)
+.|.|.+ .|.|.|.|+|+|||..+. .+.++.+..+++ +|.|..+. .+|+|.|+|.|.|..|.+.+.
T Consensus 1 ~~l~C~~--~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEA--KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEec--cccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4799999 899999999999999764 345565544444 68888764 247999999999999987665
No 176
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.23 E-value=2.7e-11 Score=97.07 Aligned_cols=67 Identities=18% Similarity=0.419 Sum_probs=55.5
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
|.+...|+...+.+|++|+|.|.+ .+.|. ..+.|+|||..+... ++ +|.|.++ .+|+|.|+|+|.|
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~--~~~p~~~~~~W~kng~~l~~~--------~~--~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNG--FNSPEQNSTQWYHNGKLLETT--------TN--SYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeC--CCCCCCccEEEEECCEEeecc--------CC--eEEEeec-ccCCEEeEEECCC
Confidence 567778888999999999999999 45564 579999999987321 12 7899999 9999999999987
Q ss_pred C
Q psy2145 263 A 263 (808)
Q Consensus 263 ~ 263 (808)
.
T Consensus 68 ~ 68 (78)
T cd05752 68 S 68 (78)
T ss_pred C
Confidence 5
No 177
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.23 E-value=5.2e-11 Score=96.71 Aligned_cols=65 Identities=22% Similarity=0.390 Sum_probs=54.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
..+.+|+++.|.|.+ . .|.+.|.|+|||.+|..+ .++.+. .+ .|.|.+++.+|+|.|+|.|.+..
T Consensus 6 ~~v~~G~~v~L~C~~--~-~~~~~i~W~~ng~~i~~~~~r~~~~--~~--~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 6 RTFKLGNNAELKCSP--K-SNLARVVWKFDGKVLTPESAKYLLY--RD--GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEEECCCCEEEEEEC--C-CCCCeEEEEECCEECCCCCceEEEE--CC--cEEEeCCCHHHCEEEEEEEEecc
Confidence 467889999999997 3 478899999999999876 455543 23 59999999999999999999884
No 178
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.22 E-value=4.7e-11 Score=98.22 Aligned_cols=76 Identities=13% Similarity=0.318 Sum_probs=60.1
Q ss_pred CCceEEEEEEeeCCC--CCcEEEEEECCEecCCCCC----eE-EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEE
Q psy2145 519 GKNAHFSCRLIPVGD--PTLKVEWFRNEKPLEDSSR----IT-TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 519 G~~v~l~C~v~~~g~--P~~~v~W~k~g~~l~~~~~----~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 591 (808)
|+.+.|.|.+ .|. |.+.|+|+++++.+..... .. .........|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 1 Ge~~~L~C~~--~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTV--LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEE--EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 7899999999 677 8899999998876543211 11 1111234589999999999999999999999999999
Q ss_pred EEEEE
Q psy2145 592 ASMKI 596 (808)
Q Consensus 592 ~~l~V 596 (808)
+.|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 98876
No 179
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.22 E-value=6.6e-11 Score=94.96 Aligned_cols=66 Identities=27% Similarity=0.545 Sum_probs=50.9
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCC--CCeEEEeeCcEEEEEECCCCC----CCCEEEEEEEEeCCeeEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS--SRITTKHDFGYVAMDLSHVRA----EDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~N~~G~~~~s 591 (808)
+.|.|.+ .|.|.|+|+|+|||.++... .++.+...++ +|.|..+.. .|.|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a--~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEA--KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeC--cccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 5799999 89999999999999987433 3344443344 677766654 37899999999999987664
No 180
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.21 E-value=9.2e-07 Score=109.95 Aligned_cols=450 Identities=14% Similarity=0.130 Sum_probs=255.2
Q ss_pred CCCcccccccccccee--eeccCCCchhhhhhhccCC--ccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe
Q psy2145 13 SSPYLSSKKETSYHWQ--NVPVPEWSKEQENAKKKKN--FIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK 88 (808)
Q Consensus 13 ~~~~~~~~~ed~g~y~--c~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~ 88 (808)
.++.....-.+.|.|. ..+.|..+..+........ +.-..+.. ..- .+..|+.|+|.-.+.. .....+.|..
T Consensus 1658 tGk~~~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~a-S~~-~aavn~~V~fs~~lt~--GS~vty~W~~ 1733 (2740)
T TIGR00864 1658 SGKGAKLNPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQA-SDN-PAAVNALINLSAELAE--GSGLQYRWFL 1733 (2740)
T ss_pred cCceeEEecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEec-cCC-cccCCCeEEEEEEecC--CCCcEEEEEE
Confidence 3343333344555554 7778776666443332211 11111221 122 5678999999987773 5667999987
Q ss_pred CCE-EeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEE--EecCcceEEEEEEEEecCCCccccccccccceeeeeec
Q psy2145 89 NGR-PVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA--VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165 (808)
Q Consensus 89 ~g~-~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (808)
++. ....... ...+ + -...|.|...+ .|..|....+..+.|..+..
T Consensus 1734 gdG~s~~~s~p-~~tH-----t-------f~~~G~y~VtVta~N~vss~~~s~~V~VqepV~------------------ 1782 (2740)
T TIGR00864 1734 EEGDDLETSEP-FMSH-----S-------FPSAGLHLVTMKAFNELGSANASEEVDVQEPIS------------------ 1782 (2740)
T ss_pred CCCCCcccCCC-ceEE-----E-------ccCCceEEEEEEEEccccccceeEEEEEEeccc------------------
Confidence 553 2111111 0111 1 23568887655 58888888887777764321
Q ss_pred cccccccccccccccCCCCeEEeec--CceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEE
Q psy2145 166 DKSKYQRGEYIEETTTQAPIFTTSL--KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243 (808)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~P~~~~~~--~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L 243 (808)
-..|...- ....+..|..+.|.-.+. .|. ...+.|..++..-..+. ...
T Consensus 1783 -----------------GL~i~~~~~~~~~~~~ag~~v~F~a~vs-tGs-nVsw~W~f~~g~s~~gk---------~v~- 1833 (2740)
T TIGR00864 1783 -----------------GLKIRAADAGEQNFFAADSSVCFQGELA-TGT-NVSWCWAIDGGSSKMGK---------HAC- 1833 (2740)
T ss_pred -----------------cceEecCCCCcccceecCcEEEEEEEcc-CCC-eeEEEEEeCCCCccccc---------eeE-
Confidence 11111111 111345688888888874 333 45788887654311111 111
Q ss_pred EEccCCCCCcEEEE--EEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccC
Q psy2145 244 DIMQCLPEDSGVYT--CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321 (808)
Q Consensus 244 ~I~~~~~~D~G~Y~--C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~ 321 (808)
.+..+.|.|+ ..|.|..+....+..+.|+.+.. .+...
T Consensus 1834 ----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~------------------------------------~L~L~ 1873 (2740)
T TIGR00864 1834 ----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF------------------------------------GLELK 1873 (2740)
T ss_pred ----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc------------------------------------eEEEe
Confidence 3467899995 55788888888888888876321 11112
Q ss_pred CCceEeecCCeEEEEEEEeecCCCccEEEEEEC-CEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEE--EEEEEcCCcc
Q psy2145 322 MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN-GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTY--TCRAVNELGE 398 (808)
Q Consensus 322 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y--~C~a~n~~g~ 398 (808)
.....+..|+.++|.+.+ ...+...+.|... |.+..........+ . ..--|.| +..|.|..+.
T Consensus 1874 as~~~~~~n~~v~fsa~l--~~GS~Vtf~w~fGdgs~~~~t~~~t~~H-----------s-Y~~~G~Y~VtV~A~N~Vs~ 1939 (2740)
T TIGR00864 1874 ASKKIAAIGEKVEFQILL--AAGSAVNFRLQIGGAAPEVLQPGPRFSH-----------S-FPRVDDHMVNLRAKNEVSC 1939 (2740)
T ss_pred cccccccCCCEEEEEEEe--cCCCceEEEEEeCCCCceeecCCCeEEe-----------e-cCCCCcEEEEEEEEeccce
Confidence 223345679999999998 5566889999875 43322111001111 1 1234555 4567888888
Q ss_pred eEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchh
Q psy2145 399 AVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGL 478 (808)
Q Consensus 399 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (808)
......+.|..+-.- +.+
T Consensus 1940 ~~a~~~V~Vle~V~g-------------------------------------L~I------------------------- 1957 (2740)
T TIGR00864 1940 AQANLHIEVLEAVRG-------------------------------------LQI------------------------- 1957 (2740)
T ss_pred eeeeEEEEEEEeccc-------------------------------------eEe-------------------------
Confidence 777666666543100 000
Q ss_pred hhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee
Q psy2145 479 EKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558 (808)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~ 558 (808)
...-...+..|+..+|...+. .|.| ..+.|+++-+.+..+..+....
T Consensus 1958 ------------------------------~~~c~~~~~~g~~~tF~A~v~-~g~~-V~f~W~f~~~~~~g~~~~~~~G- 2004 (2740)
T TIGR00864 1958 ------------------------------PDCCAAGIATGEEKNFTANVQ-RGKP-VAFAWTFDLHHLHGDSLVIHMG- 2004 (2740)
T ss_pred ------------------------------cCCcccceecCceEEEEEEEe-cCCc-eEEEEEeeecccCCCcceeecC-
Confidence 000000146799999999985 5554 4699998766665554432222
Q ss_pred CcEEEEEECCCCCCCCEEEEE--EEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCC
Q psy2145 559 FGYVAMDLSHVRAEDEGIYIC--KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636 (808)
Q Consensus 559 ~~~~~L~I~~v~~~D~G~Y~C--~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P 636 (808)
...+... ...|.|+. .|.|..|.......|.|+....
T Consensus 2005 -~~vty~~-----~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~----------------------------------- 2043 (2740)
T TIGR00864 2005 -KDVSYTA-----EAAGLLEIQLGAFNALGAENITLQLEAQDALM----------------------------------- 2043 (2740)
T ss_pred -CceEEcc-----CCCcEEEEEEEEEcccCcccccEEEEEEehee-----------------------------------
Confidence 2222333 35788865 6789999988777777775321
Q ss_pred eEEeecC-CCccccCCceEEEEEEEeeCCCCCeEEEEEEC-CEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE--
Q psy2145 637 IFTQLLT-GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN-GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK-- 712 (808)
Q Consensus 637 ~~~~~~~-~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~-- 712 (808)
...+. .+.....+..++|.|.+.+ +.-...+.|-++ |......+..++.+ .. ...|.|...
T Consensus 2044 --~~~L~~~p~~~~~n~~v~f~~~~~~-~~~~v~~~WDFGDGt~~~~T~~~~~sH-----------tY-~r~G~Y~V~V~ 2108 (2740)
T TIGR00864 2044 --DAALQAGPQDCFTNKMAQFEAATSP-KPNFMACHWDFGDGSAGQDTDEPRAEH-----------EY-LHPGDYRVQVN 2108 (2740)
T ss_pred --eEEEeecCcceecCceEEEEEEEcc-CCCcEEEEEEecCCCCccccCCceeEE-----------Ee-cCCccEEEEEE
Confidence 11111 2234556889999999842 233579999884 66654332222221 11 235888866
Q ss_pred EEeCCcceEEEEEEEEEeC
Q psy2145 713 AINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~ 731 (808)
|+|.+......+.|.|...
T Consensus 2109 a~N~VS~~~a~~~i~V~vl 2127 (2740)
T TIGR00864 2109 ASNLVSFFSAHAEINVQVL 2127 (2740)
T ss_pred EEcceeeeeeEEEEEEEEe
Confidence 6899998888888888654
No 181
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.20 E-value=1.3e-10 Score=94.33 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=56.7
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCC-CceEEEecCceEEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG-SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
.|++..+..|+++.|.|.+ ..+.+.|.|++||.+|..+ .++.+. ++ .|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~---~~~~~~i~W~~ng~~i~~~~~r~~~~-~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSP---KSNLARVVWKFDGKVLTPESAKYLLY-RD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEEC---CCCCCeEEEEECCEECCCCCceEEEE-CC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 4567889999999999997 3467899999999999766 455443 32 69999999999999999998853
No 182
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.19 E-value=1.2e-10 Score=97.60 Aligned_cols=84 Identities=19% Similarity=0.428 Sum_probs=63.5
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--------CEEeeccCcEEEEee-CCeEEEEEcccCcCCCeeEEE
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--------GRPVTIGHRFRPIHD-FGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--------g~~l~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~C 125 (808)
.++++ .+.+|++++|.|.+. +.|.+.|.|++. +.....+.|+....+ .+..+|.|.+++.+|+|.|+|
T Consensus 3 ~~~~v-~v~eG~~v~L~C~~~--~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 3 LTQNV-TVVEGGTANLTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTC 79 (95)
T ss_pred ccceE-EEecCCcEEEEEEEe--cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEE
Confidence 35666 899999999999998 578889999863 222334567766433 355789999999999999999
Q ss_pred EEEecCcceEEEEEEEE
Q psy2145 126 RAVNLVGFAEVQATLQC 142 (808)
Q Consensus 126 ~a~n~~g~~~~~~~l~V 142 (808)
.+.+..+ ....+.|+|
T Consensus 80 ~~~t~~~-~~~~~~l~v 95 (95)
T cd07701 80 SLFTMPV-KTSKAYLTV 95 (95)
T ss_pred EeEeecC-ccEEEEEEC
Confidence 9998533 366666654
No 183
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.17 E-value=1e-10 Score=96.53 Aligned_cols=81 Identities=26% Similarity=0.430 Sum_probs=65.7
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.+..|..+ .+.+|++++|.|.+.+ +.|.+.+.|++++..+... . ...+ ..|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~~p~~~-~v~~G~~v~L~C~~~~-~~~~~~i~W~~~~~~~~~~--~--~~~~--~~L~I~~v~~~DsG~Y~C~a~n~~ 75 (85)
T cd05754 4 TVEEPRSQ-EVRPGADVSFICRAKS-KSPAYTLVWTRVGGGLPSR--A--MDFN--GILTIRNVQLSDAGTYVCTGSNML 75 (85)
T ss_pred EecCCCce-EEcCCCCEEEEEEcCC-CCCCcEEEEEECCCcCCCc--c--cccC--CEEEECCCCHHHCEEEEEEEeccC
Confidence 45677777 8999999999999974 3688899999998765432 1 1112 379999999999999999999999
Q ss_pred cceEEEEEE
Q psy2145 132 GFAEVQATL 140 (808)
Q Consensus 132 g~~~~~~~l 140 (808)
|....++.|
T Consensus 76 g~~~~~~~l 84 (85)
T cd05754 76 DTDEATATL 84 (85)
T ss_pred CeEeEEEEE
Confidence 999888876
No 184
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.16 E-value=2.8e-10 Score=95.01 Aligned_cols=81 Identities=14% Similarity=0.284 Sum_probs=61.0
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEc--------cCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL--------KMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
...+.+|+++.|.|.+ .|.|.|.|.|+++|..+ ..+.|+.+... .+..+|.|.+|..+|+|.|+|.|..
T Consensus 6 ~~tv~~G~tv~L~C~v--~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 6 DETVAVGGTVTLKCGV--KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cEEEecCCcEEEEEEE--eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 3568899999999999 79999999999877532 23456665433 3457999999999999999999987
Q ss_pred CCcceEEEEEEEE
Q psy2145 716 RAGEAVSSTSLKV 728 (808)
Q Consensus 716 ~~G~~~~s~~l~V 728 (808)
. -..+..++|.|
T Consensus 84 ~-~~~~~~~~~~v 95 (95)
T cd05882 84 M-PVRTAKATVTV 95 (95)
T ss_pred e-ccccEEEEEEC
Confidence 2 23344444443
No 185
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.16 E-value=3.9e-10 Score=93.28 Aligned_cols=80 Identities=25% Similarity=0.470 Sum_probs=65.9
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEE-eeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK-HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+..|+.+.|.|.+ .+.|.+.+.|+|++..+.....+... .......|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 5 ~~~~G~~~~l~C~~--~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 5 AVPAGSTVRLKCPA--SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred EecCCCcEEEEEEc--CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 46789999999999 78999999999999988765444322 1233457999999999999999999999999888887
Q ss_pred EEE
Q psy2145 594 MKI 596 (808)
Q Consensus 594 l~V 596 (808)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 764
No 186
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.15 E-value=2.8e-10 Score=93.19 Aligned_cols=77 Identities=17% Similarity=0.386 Sum_probs=57.2
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCC----CeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCe--eEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS----RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG--EAVTTA 592 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G--~~~~s~ 592 (808)
|+++.|.|.+ .|.|.+.+.|+++|+...... +..+.......+|.|.+++.+|+|.|+|.|.|..+ ....++
T Consensus 1 Ge~~~l~C~~--~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIV--QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEE--ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 7899999999 789999999999886542211 11111122245899999999999999999999877 556666
Q ss_pred EEEEE
Q psy2145 593 SMKIK 597 (808)
Q Consensus 593 ~l~V~ 597 (808)
.|+|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 66664
No 187
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.15 E-value=1.3e-10 Score=94.24 Aligned_cols=70 Identities=24% Similarity=0.491 Sum_probs=52.8
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecC--------CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeE-EEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLE--------DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA-VTTA 592 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~s~ 592 (808)
|+|.|.+ .|.|.|.|+|+|++.... ...++.... ++ +|.|.++..+|+|.|+|.|.|..|.. +.++
T Consensus 1 v~l~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSA--EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS-NG--SLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeC--eEeCCCEEEEEECCCccccccccccccCCCEEEec-CC--eEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 5799999 899999999999743211 234444432 23 79999999999999999999999977 4455
Q ss_pred EEEE
Q psy2145 593 SMKI 596 (808)
Q Consensus 593 ~l~V 596 (808)
.|.|
T Consensus 76 ~l~~ 79 (79)
T cd05734 76 VLTV 79 (79)
T ss_pred EEeC
Confidence 5543
No 188
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.15 E-value=4e-10 Score=93.76 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=69.5
Q ss_pred eeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc--CcEEEEee----CCeEEEEEcccCcCC-CeeE
Q psy2145 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHD----FGYVALDIIDTIPED-SGTY 123 (808)
Q Consensus 51 ~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~--~r~~~~~~----~~~~~L~I~~~~~~D-~G~Y 123 (808)
+.+....+. .+.+|+++.|.|.+.+ .+++..|.|..++..|..+ .||.+... +...+|.|.++...| .|.|
T Consensus 3 P~i~~~~s~-~~~~G~~~~L~C~~~s-~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 3 PIISSEQVQ-YAVRGERGKVKCFIGS-TPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CEEecCceE-EEeCCCcEEEEEEEcc-CCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 445555666 8999999999999974 2333478999988887653 58877553 466799999998766 8999
Q ss_pred EEEEEecCcceEEEEEE
Q psy2145 124 TCRAVNLVGFAEVQATL 140 (808)
Q Consensus 124 ~C~a~n~~g~~~~~~~l 140 (808)
.|.|.|.+|.+...++|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999887776
No 189
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.15 E-value=1.6e-10 Score=95.75 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=62.1
Q ss_pred cccCCCceEEEEEEee---CCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEE
Q psy2145 515 AVEEGKNAHFSCRLIP---VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~---~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 591 (808)
.+.+|..+.|.|.... ..+|.|.+.|+|||+++....+... .++ .|.|.++..+|+|.|+|.|.|..|.....
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~~--~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KGS--KLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cCC--EEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 5788999999998620 1136789999999999986654432 333 79999999999999999999998877766
Q ss_pred EEEEEE
Q psy2145 592 ASMKIK 597 (808)
Q Consensus 592 ~~l~V~ 597 (808)
++..+.
T Consensus 82 ~t~t~~ 87 (92)
T cd05757 82 VTRTIS 87 (92)
T ss_pred EEEEEE
Confidence 655554
No 190
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.14 E-value=1e-10 Score=96.31 Aligned_cols=72 Identities=26% Similarity=0.428 Sum_probs=58.7
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEec--CCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeE
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL--EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 588 (808)
..+.+|+.+.|.|.. |.|.|.+.+.|++++.++ ..+.+..+....| .|.|.+++.+|+|.|+|.|+|..+..
T Consensus 13 ~~v~eG~~~~L~C~p-P~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 13 VKVKEGWGVVLFCDP-PPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeeCCcEEEeeCC-CCCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 368899999999985 699999999999999864 3344444554445 79999999999999999999986544
No 191
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.12 E-value=2.1e-10 Score=95.53 Aligned_cols=78 Identities=27% Similarity=0.484 Sum_probs=61.1
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC----cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCC-cce
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS----RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRA-GEA 720 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~-G~~ 720 (808)
..+.+|+.+.|.|.+ .+ |.+.+.|+|||..+.... ++... . ..|.|.++..+|+|.|+|.|.|.. +..
T Consensus 6 ~~v~~g~~v~L~C~~--~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 6 VTVVEGNSVFLECSP--KS-NLASVVWLFQGGPLQRKEEPEERLLVT--E--DGLLIRSVSPADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred EEEECCCcEEEEEeC--CC-CCceEEEEECCcccccccCcCceEEEc--C--CCEEEccCCHHHCEEEEEEEecCcccee
Confidence 357789999999998 56 889999999998887652 33332 2 259999999999999999999764 566
Q ss_pred EEEEEEEEEe
Q psy2145 721 VSSTSLKVKS 730 (808)
Q Consensus 721 ~~s~~l~V~~ 730 (808)
..+..|.|..
T Consensus 79 ~~~~~l~V~~ 88 (89)
T cd04979 79 LATYSLNVLE 88 (89)
T ss_pred EeEEEEEEec
Confidence 6677777753
No 192
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.11 E-value=2.5e-10 Score=94.52 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=58.0
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEcc--------------CCCcEEEEE---eCCEEEEEEccCCCCCcEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK--------------MGSRFHVQH---DFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~--------------~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y 709 (808)
.+.+|++|+|.|.+ .+.|.+.|.|++++.... ..+|+.+.. +.+...|+|.++..+|+|+|
T Consensus 3 ~~~~G~~VtL~C~~--s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTA--SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEe--CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 46789999999999 789999999998773321 123444444 45667899999999999999
Q ss_pred EEEEEeCCcceE
Q psy2145 710 MCKAINRAGEAV 721 (808)
Q Consensus 710 ~C~A~N~~G~~~ 721 (808)
.|.|.|..++.+
T Consensus 81 ~C~v~~~~~~~~ 92 (94)
T cd07690 81 ICEVEDKKEEVE 92 (94)
T ss_pred EEEECCccceEE
Confidence 999999988653
No 193
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.11 E-value=8.3e-10 Score=92.15 Aligned_cols=82 Identities=16% Similarity=0.361 Sum_probs=61.4
Q ss_pred CCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEe--------eccCcEEEEeeC-CeEEEEEcccCcCCCeeEEEEE
Q psy2145 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPV--------TIGHRFRPIHDF-GYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 57 ~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l--------~~~~r~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
.++ .+.+|+++.|.|.+. +.|.+.|.|+|++..+ ..+.|+.+.... +..+|.|.++..+|+|.|+|.+
T Consensus 5 ~~~-tv~~G~tv~L~C~v~--g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 5 QDE-TVAVGGTVTLKCGVK--EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccE-EEecCCcEEEEEEEe--CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEE
Confidence 345 789999999999999 5788899999977543 234566544333 4579999999999999999999
Q ss_pred EecCcceEEEEEEEE
Q psy2145 128 VNLVGFAEVQATLQC 142 (808)
Q Consensus 128 ~n~~g~~~~~~~l~V 142 (808)
... -..+..++|+|
T Consensus 82 ~t~-~~~~~~~~~~v 95 (95)
T cd05882 82 FTM-PVRTAKATVTV 95 (95)
T ss_pred Eee-ccccEEEEEEC
Confidence 873 34455555543
No 194
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.11 E-value=3e-10 Score=92.63 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=54.8
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV 721 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 721 (808)
.+.+|++++|.|.+. .+.|.+.+.|||+|+.+.... ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 10 ~V~~G~~vtL~C~~~-~~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 10 VVFEGEPLVLRCHGW-KNKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred eecCCCCEEEEeeCC-CCCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 588999999999973 357788999999998775321 224799999999999999999999999554
No 195
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.07 E-value=8.2e-10 Score=90.11 Aligned_cols=78 Identities=31% Similarity=0.639 Sum_probs=61.4
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.+.... ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+..+.. .|.|..+..+|+|.|+|.|.|
T Consensus 2 P~l~~~~---~~v~~g~~~~l~C~~--~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 2 PVLSSSP---QSVEEGDSVTLTCSV--SGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp -EEEEES---SEEETTSEEEEEEEE--ESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEE
T ss_pred cEEEccc---eEEeCCCcEEEEEEE--Ecccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEe
Confidence 5555443 468899999999999 6999999999999988874322 277889999999999999999
Q ss_pred CCc-ceEEEEEEEE
Q psy2145 716 RAG-EAVSSTSLKV 728 (808)
Q Consensus 716 ~~G-~~~~s~~l~V 728 (808)
..| ..+.++.|+|
T Consensus 67 ~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 67 GSGSNTSTSVNVTV 80 (80)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCCeEeeeEEeeC
Confidence 664 5566677765
No 196
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.07 E-value=7.7e-10 Score=90.88 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=59.2
Q ss_pred CceEEEEEEEeeCCCC--CeEEEEEECCEEccC---CCcEEE---EEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 651 GQSAHYDCRVVPVGDP--TMRFEWFVNGVELKM---GSRFHV---QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P--~p~i~W~~~g~~l~~---~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
|+++.|.|.+ .|+| ...+.|.+.|+.+.. ...++. ......++|.|.++..+|+|.|+|.|+|..|....
T Consensus 1 Ge~~~L~C~~--~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTA--RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEE--EeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 7899999999 5555 568899998865421 111111 11234579999999999999999999999999999
Q ss_pred EEEEEEE
Q psy2145 723 STSLKVK 729 (808)
Q Consensus 723 s~~l~V~ 729 (808)
++.|.|.
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 9999986
No 197
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.07 E-value=8.1e-10 Score=91.63 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=60.4
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE--CCEEc----cCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE-eCCc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV--NGVEL----KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI-NRAG 718 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~--~g~~l----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~-N~~G 718 (808)
+.+.+|+++.|.|.. +.|.|.|.||| +|... ..+.++... . ..|.|.++..+|+|.|+|.|. |..|
T Consensus 6 ~~~~eG~~v~L~C~~---~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--~--~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 6 VYGVENNSTFLECLP---KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--E--RGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEecCCcEEEEEEC---CCCCceEEEEEECCCCCccccccccccEEEe--c--CeEEEeeCChhHCEEEEEEEEccCCe
Confidence 357789999999986 58999999998 33222 223455432 2 269999999999999999998 6888
Q ss_pred ceEEEEEEEEEe
Q psy2145 719 EAVSSTSLKVKS 730 (808)
Q Consensus 719 ~~~~s~~l~V~~ 730 (808)
.....++|+|..
T Consensus 79 ~~~~~~~l~v~~ 90 (91)
T cd05871 79 QTLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEEec
Confidence 888889998863
No 198
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.05 E-value=8.4e-10 Score=85.11 Aligned_cols=63 Identities=37% Similarity=0.554 Sum_probs=52.6
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
+|+.+.|.|.+ .+.|.+.+.|+++|..+.. ..... .....|.|.++..+|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~--~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA--EGDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC--ccCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48999999997 7899999999999998872 22222 2334899999999999999999999876
No 199
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.05 E-value=2.3e-10 Score=94.07 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=61.7
Q ss_pred EEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEE-ccCCCcEEEEEeCCEEEEEEccCCCCCcE-EEEEEEEe
Q psy2145 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE-LKMGSRFHVQHDFGYVTLDITKCVPADSG-VYMCKAIN 715 (808)
Q Consensus 638 ~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N 715 (808)
|.........+.+|+.+.|.|.. |.|.|.|.|.|++++.. +..+.|+.+..+ ..|.|.+|..+|+| .|.|.|+|
T Consensus 5 ~~~~~~~~v~V~eG~~~~L~C~p-P~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~---GnL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 5 WPKEKIRPVEVEEGDSVVLPCNP-PKSAVPLRIYWMNSDLLHITQDERVSMGQN---GNLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred CCccccceeEEecCCCEEEEecC-CCCCCCCEEEEECCCCccccccccEEECCC---ceEEEEEEehhhCCCCeEEEEEc
Confidence 33333344678999999999974 38999999999998755 445666666544 37999999999999 79999999
Q ss_pred CCcce
Q psy2145 716 RAGEA 720 (808)
Q Consensus 716 ~~G~~ 720 (808)
.+...
T Consensus 81 ~~~~~ 85 (95)
T cd05845 81 PGLRT 85 (95)
T ss_pred ccccc
Confidence 97544
No 200
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.05 E-value=3.1e-09 Score=87.71 Aligned_cols=81 Identities=37% Similarity=0.642 Sum_probs=71.8
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEEC-CEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVN-GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+.+|+++.|.|.+ .+.+.+.+.|+++ +..+....++.........+|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 4 ~~~~~g~~~~l~C~~--~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 4 VTVKEGESVTLSCEV--SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred EEEeCCCeEEEEEEE--ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 356789999999999 6778999999998 9999877888887776678999999999999999999999999988888
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7776
No 201
>smart00409 IG Immunoglobulin.
Probab=99.05 E-value=3.1e-09 Score=87.71 Aligned_cols=81 Identities=37% Similarity=0.642 Sum_probs=71.8
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEEC-CEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVN-GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+.+|+++.|.|.+ .+.+.+.+.|+++ +..+....++.........+|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 4 ~~~~~g~~~~l~C~~--~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 4 VTVKEGESVTLSCEV--SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred EEEeCCCeEEEEEEE--ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 356789999999999 6778999999998 9999877888887776678999999999999999999999999988888
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7776
No 202
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.04 E-value=1.1e-09 Score=91.10 Aligned_cols=80 Identities=31% Similarity=0.475 Sum_probs=60.8
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC----ceEEEecCceEEEEEccCCCCCcEEEEEEEEeCc-
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS----RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNAL- 264 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~- 264 (808)
+..+.+.+|+++.|.|.+ .+ |.+.+.|+|++..+.... ++.... + .|.|.+++.+|+|.|+|.|.|..
T Consensus 3 ~~~~~v~~g~~v~L~C~~--~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~--~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 3 EKVVTVVEGNSVFLECSP--KS-NLASVVWLFQGGPLQRKEEPEERLLVTE--D--GLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred ceEEEEECCCcEEEEEeC--CC-CCceEEEEECCcccccccCcCceEEEcC--C--CEEEccCCHHHCEEEEEEEecCcc
Confidence 445678899999999998 34 778999999998876542 333322 2 59999999999999999999754
Q ss_pred eeEEEEEEEEEe
Q psy2145 265 GQAVTSGNLLVH 276 (808)
Q Consensus 265 g~~~~~~~l~V~ 276 (808)
+....+..|.|.
T Consensus 76 ~~~~~~~~l~V~ 87 (89)
T cd04979 76 KQTLATYSLNVL 87 (89)
T ss_pred ceeEeEEEEEEe
Confidence 445556677664
No 203
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.04 E-value=1.1e-09 Score=89.36 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=56.2
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAV 268 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 268 (808)
.+....+.+|++|+|.|.+. .+.+...+.|||+|..+.... ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~-~~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGW-KNKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred ECCcceecCCCCEEEEeeCC-CCCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 33345789999999999984 246677899999998775311 122799999999999999999999888654
Q ss_pred E
Q psy2145 269 T 269 (808)
Q Consensus 269 ~ 269 (808)
+
T Consensus 76 s 76 (83)
T cd05753 76 S 76 (83)
T ss_pred C
Confidence 3
No 204
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.04 E-value=1.6e-09 Score=91.41 Aligned_cols=81 Identities=17% Similarity=0.366 Sum_probs=60.9
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCE--------EccCCCcEEEEE-eCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV--------ELKMGSRFHVQH-DFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~--------~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
...+.+|++++|.|.+ .+.|.+.+.|++-+. ....+.||.+.. .+...+|.|.+++.+|+|.|+|.|.+
T Consensus 6 ~~~v~~G~~v~L~C~~--~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 6 DVTVVEGGTATLKCRV--KNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred cEEEcCCCCEEEEEEE--CCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 3568899999999999 788999999985221 111245776633 23456899999999999999999998
Q ss_pred CCcceEEEEEEEE
Q psy2145 716 RAGEAVSSTSLKV 728 (808)
Q Consensus 716 ~~G~~~~s~~l~V 728 (808)
... .+.++.|+|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 764 466676765
No 205
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.03 E-value=1.3e-05 Score=100.04 Aligned_cols=454 Identities=16% Similarity=0.146 Sum_probs=245.3
Q ss_pred ccccee--eeccCCCchhhhhhhcc--CCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc
Q psy2145 23 TSYHWQ--NVPVPEWSKEQENAKKK--KNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR 98 (808)
Q Consensus 23 d~g~y~--c~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r 98 (808)
..|.|. ..+.|..+......... .++.-..+. +... .+..+.++.|+-.... |. ...+.|.+++.-......
T Consensus 1482 ~~GtYtVtLTvtN~~Gsst~T~~VtV~~pV~~~tin-as~~-~vpl~~sV~Fta~~s~-Gs-~v~ysWdFGDg~ts~~~n 1557 (2740)
T TIGR00864 1482 SPGDFNIRLAAANEVGKNEATLNVAVKARVRGLTIN-ASLT-NVPLNGSVHFEAHLDA-GD-DVRFSWILCDHCTPIFGG 1557 (2740)
T ss_pred CCceEEEEEEEECCCCceEEEEEEEEeccccceEEc-CCCc-cccccceEEEEEEccC-CC-ceeEEEEeCCCCccccCC
Confidence 456665 66777765543222211 111111222 2222 4566778999866553 33 458999885532111100
Q ss_pred EEEEeeCCeEEEEEcccCcCCCeeEEEEE--EecCcceEEEEEEEEecCCCccccccccccceeeeeecccccccccccc
Q psy2145 99 FRPIHDFGYVALDIIDTIPEDSGTYTCRA--VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYI 176 (808)
Q Consensus 99 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (808)
-.. .-+ -...|.|+... .|..|....+..+.|......+. .+..
T Consensus 1558 pt~-------~yT-----Y~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~Glq------------I~~~---------- 1603 (2740)
T TIGR00864 1558 NTI-------FYT-----FRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEGLQ------------ILGE---------- 1603 (2740)
T ss_pred Cce-------EEe-----ecCCceEEEEEEEecCCCccceeEEEEEeecccceE------------EEee----------
Confidence 000 011 12468887654 58999988888888864322110 0000
Q ss_pred ccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEE
Q psy2145 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVY 256 (808)
Q Consensus 177 ~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 256 (808)
....-..=...+....+..|..+.|.-.+. ..-...+.|-.-+..-..+..+ ...+...++ ...+.|.|
T Consensus 1604 --~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~--~GTnvsysW~~~~~n~~dg~~~--~~tGk~~~v-----t~~~pG~Y 1672 (2740)
T TIGR00864 1604 --TAEGGGGGVQELDGCYFETNHTVQFHAGFK--DGTNLSFSWNAILDNEPDGPAF--AGSGKGAKL-----NPLEAGPC 1672 (2740)
T ss_pred --cccccCCcccccccceeccCCEEEeeeccC--CCCeeEEEEEEecCCCCCCccc--cccCceeEE-----ecCCCceE
Confidence 000000000011123455677788887773 3345678886511100001101 111111122 24667888
Q ss_pred --EEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEE
Q psy2145 257 --TCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAH 334 (808)
Q Consensus 257 --~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~ 334 (808)
+..|.|..|....+..+.|..+. ..+........+..|+.++
T Consensus 1673 ~VtL~aSN~vG~~t~s~~i~v~epi------------------------------------~~L~L~aS~~~aavn~~V~ 1716 (2740)
T TIGR00864 1673 DIFLQAANLLGQATADCTIDFLEPA------------------------------------GNLMLQASDNPAAVNALIN 1716 (2740)
T ss_pred EEEEEEeecccceeeEEEEEEEEEc------------------------------------CceEEeccCCcccCCCeEE
Confidence 56678999998888888876521 1111122223345689999
Q ss_pred EEEEEeecCCCccEEEEEECCE-eccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEE--EEEcCCcceEEEEEEEEEecc
Q psy2145 335 FEARLIPVGDSKLKVTWLRNGV-PIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTC--RAVNELGEAVTSSTLFVESKA 411 (808)
Q Consensus 335 l~C~~~~~g~p~~~v~W~~~g~-~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~ 411 (808)
|...+ .+.....+.|...+. ....... .+.+ .....|.|.. .|.|..|+...+..|.|+.+-
T Consensus 1717 fs~~l--t~GS~vty~W~~gdG~s~~~s~p-~~tH------------tf~~~G~y~VtVta~N~vss~~~s~~V~VqepV 1781 (2740)
T TIGR00864 1717 LSAEL--AEGSGLQYRWFLEEGDDLETSEP-FMSH------------SFPSAGLHLVTMKAFNELGSANASEEVDVQEPI 1781 (2740)
T ss_pred EEEEe--cCCCCcEEEEEECCCCCcccCCC-ceEE------------EccCCceEEEEEEEEccccccceeEEEEEEecc
Confidence 99877 677888999997553 2111111 0111 1245677754 678999998888888887542
Q ss_pred cccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCC
Q psy2145 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHK 491 (808)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (808)
.-. .|.. ..
T Consensus 1782 ~GL-----------------------------------~i~~--~~---------------------------------- 1790 (2740)
T TIGR00864 1782 SGL-----------------------------------KIRA--AD---------------------------------- 1790 (2740)
T ss_pred ccc-----------------------------------eEec--CC----------------------------------
Confidence 100 0000 00
Q ss_pred CCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCC
Q psy2145 492 RPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571 (808)
Q Consensus 492 ~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~ 571 (808)
+. ....+..|..+.|.-.+. .|.+ ..+.|.++|..-.. +.... .+.
T Consensus 1791 -----------------~~-~~~~~~ag~~v~F~a~vs-tGsn-Vsw~W~f~~g~s~~---------gk~v~-----~Tf 1836 (2740)
T TIGR00864 1791 -----------------AG-EQNFFAADSSVCFQGELA-TGTN-VSWCWAIDGGSSKM---------GKHAC-----MTF 1836 (2740)
T ss_pred -----------------CC-cccceecCcEEEEEEEcc-CCCe-eEEEEEeCCCCccc---------cceeE-----Eec
Confidence 00 000245688899988873 4444 47888887643111 11112 234
Q ss_pred CCCEEEEE--EEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 572 EDEGIYIC--KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 572 ~D~G~Y~C--~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
.+.|.|+. .|+|..+....+..+.|+.+.. -.....+...+.
T Consensus 1837 ~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~------------------------------------~L~L~as~~~~~ 1880 (2740)
T TIGR00864 1837 PDAGTFAIRLNASNAVSGKSASREFFAEEPIF------------------------------------GLELKASKKIAA 1880 (2740)
T ss_pred CCCeEEEEEEEEEcccCcceeeeeEEEEEecc------------------------------------eEEEeccccccc
Confidence 57898876 6789999999999999987432 111122334567
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEEC-CEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEE--EEEEEeCCcceEEEEEE
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVN-GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY--MCKAINRAGEAVSSTSL 726 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~A~N~~G~~~~s~~l 726 (808)
.|+.++|.+.+ ...+...+.|.+. |.+..... +. ++.... .-.|.| +..|.|.++.......+
T Consensus 1881 ~n~~v~fsa~l--~~GS~Vtf~w~fGdgs~~~~t~-------~~----t~~HsY-~~~G~Y~VtV~A~N~Vs~~~a~~~V 1946 (2740)
T TIGR00864 1881 IGEKVEFQILL--AAGSAVNFRLQIGGAAPEVLQP-------GP----RFSHSF-PRVDDHMVNLRAKNEVSCAQANLHI 1946 (2740)
T ss_pred CCCEEEEEEEe--cCCCceEEEEEeCCCCceeecC-------CC----eEEeec-CCCCcEEEEEEEEeccceeeeeEEE
Confidence 89999999999 5666899999885 43332111 11 111111 224444 46689999998888888
Q ss_pred EEEeC
Q psy2145 727 KVKSK 731 (808)
Q Consensus 727 ~V~~~ 731 (808)
.|..+
T Consensus 1947 ~Vle~ 1951 (2740)
T TIGR00864 1947 EVLEA 1951 (2740)
T ss_pred EEEEe
Confidence 88655
No 206
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.02 E-value=8.5e-10 Score=91.36 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=56.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee--------------ccCcEEEEe---eCCeEEEEEcccCcCCCeeE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT--------------IGHRFRPIH---DFGYVALDIIDTIPEDSGTY 123 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~--------------~~~r~~~~~---~~~~~~L~I~~~~~~D~G~Y 123 (808)
.+.+|++|+|.|.+. +.+.+.+.||++++... ...|+.... +.+.++|+|.+++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s--~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeC--CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 678999999999998 57888999998774321 123444433 45667899999999999999
Q ss_pred EEEEEecCcce
Q psy2145 124 TCRAVNLVGFA 134 (808)
Q Consensus 124 ~C~a~n~~g~~ 134 (808)
.|.+.|..+..
T Consensus 81 ~C~v~~~~~~~ 91 (94)
T cd07690 81 ICEVEDKKEEV 91 (94)
T ss_pred EEEECCccceE
Confidence 99999876654
No 207
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.97 E-value=5.1e-09 Score=86.18 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=68.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeE-EEEEECCEEccCCCc--EEEEEeC---CEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMR-FEWFVNGVELKMGSR--FHVQHDF---GYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~-i~W~~~g~~l~~~~~--~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+.|.+|+.+.|.|.+ ...|.|+ +.|.+++..+..... +...... -.+.|.+.++..+|+|.|+|.|.|..+.
T Consensus 13 ~~v~~gE~~~L~V~i--eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 13 IFVNAGENLDLIVEY--EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred EEEECCCCEEEEEEE--EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 569999999999999 7999998 999999988765433 2222111 2479999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy2145 720 AVSSTSLKVK 729 (808)
Q Consensus 720 ~~~s~~l~V~ 729 (808)
.+.++.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999999986
No 208
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.96 E-value=4.3e-09 Score=88.84 Aligned_cols=83 Identities=18% Similarity=0.428 Sum_probs=60.2
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEE-e-------eccCcEEEEe-eCCeEEEEEcccCcCCCeeEEEE
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRP-V-------TIGHRFRPIH-DFGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~-l-------~~~~r~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
++++ .+.+|++++|.|.+. +.+.+.+.|++.+.. + ..+.|+.... ....+.|.|.+++.+|+|.|+|.
T Consensus 4 ~~~~-~v~~G~~v~L~C~~~--~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 4 TQDV-TVVEGGTATLKCRVK--NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CCcE-EEcCCCCEEEEEEEC--CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEE
Confidence 3455 789999999999998 467789999863221 1 1235666533 23456899999999999999999
Q ss_pred EEecCcceEEEEEEEE
Q psy2145 127 AVNLVGFAEVQATLQC 142 (808)
Q Consensus 127 a~n~~g~~~~~~~l~V 142 (808)
+.+... .+.++.|+|
T Consensus 81 ~~~~~~-~~~~~~~~v 95 (95)
T cd05717 81 LYTMPV-QTAKATVTV 95 (95)
T ss_pred EecCCC-ceEEEEEEC
Confidence 997643 466666654
No 209
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.96 E-value=2.8e-09 Score=88.06 Aligned_cols=76 Identities=18% Similarity=0.314 Sum_probs=56.8
Q ss_pred ccccCCceEEEEEEEe-eC--CCCCeEEEEEECCEEccCCC-cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceE
Q psy2145 646 SEIMEGQSAHYDCRVV-PV--GDPTMRFEWFVNGVELKMGS-RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV 721 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~-~~--g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 721 (808)
..+.+|.+..|.|.-. .. .++.+.|+|||||++|..++ ++....+ ...|.|.+|..+|+|.|+|+|+|.+|...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 3467899999999621 01 45788999999999998654 3332122 23699999999999999999999987654
Q ss_pred EE
Q psy2145 722 SS 723 (808)
Q Consensus 722 ~s 723 (808)
-.
T Consensus 83 y~ 84 (95)
T cd05897 83 YN 84 (95)
T ss_pred EE
Confidence 43
No 210
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.95 E-value=4.6e-09 Score=83.29 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=50.8
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe---CCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD---FGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
+.|.|... .|.|.+.|+|||||++|..... ....+ ...++|.|.....+|.|.|+|.|.|.++..
T Consensus 2 ~~L~C~s~-~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSP-RSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCC-CccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 78999986 7999999999999999965321 00000 013479999999999999999999999864
No 211
>PHA03376 BARF1; Provisional
Probab=98.94 E-value=3.3e-08 Score=88.62 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=80.5
Q ss_pred ceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCE----E-------------ccCCCceEEEecCceEEEEEccCCCCCc
Q psy2145 192 NCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNV----P-------------IKSGSRFTETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~----~-------------l~~~~~~~~~~~~~~~~L~I~~~~~~D~ 253 (808)
.+.+..|+.+.|.|...+ ...+.+.|.|+|.+. - .....++.+..+.|..+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 567889999999999852 234678999999431 1 1223344555566888999999999999
Q ss_pred EEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeE
Q psy2145 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAA 333 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~ 333 (808)
|.|+|...-........-.|++..+-. +...........-+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~-------------------------------------Lsv~a~~~dFp~~~~~ 142 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLT-------------------------------------LSVHSERSQFPDFSVL 142 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecce-------------------------------------EEEEeccccCCCCCee
Confidence 999999987443333322333221100 0000000011114567
Q ss_pred EEEEEEeecCCCccEEEEEECC
Q psy2145 334 HFEARLIPVGDSKLKVTWLRNG 355 (808)
Q Consensus 334 ~l~C~~~~~g~p~~~v~W~~~g 355 (808)
++.|.. .|.|.|.++|+-|.
T Consensus 143 ~i~C~s--ggfP~P~~~Wle~~ 162 (221)
T PHA03376 143 TVTCTV--NAFPHPHVQWLMPE 162 (221)
T ss_pred EEEEec--CCcCCchheecccc
Confidence 899996 89999999999864
No 212
>PHA03376 BARF1; Provisional
Probab=98.94 E-value=5.3e-08 Score=87.35 Aligned_cols=123 Identities=14% Similarity=0.162 Sum_probs=80.8
Q ss_pred ccCCCCcEEEEEEEeeC-CCCCceEEEEeCC----EEe-------------eccCcEEEEeeCCeEEEEEcccCcCCCee
Q psy2145 61 NLRERGHAHFECKLEPV-TDSNLKVEWFKNG----RPV-------------TIGHRFRPIHDFGYVALDIIDTIPEDSGT 122 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~-~~p~~~v~W~~~g----~~l-------------~~~~r~~~~~~~~~~~L~I~~~~~~D~G~ 122 (808)
.+..|+.+.|+|...+. ..+...|.|+|.+ ..+ ....++.+..+.++++|.|.+++.+|.|.
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGt 101 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 101 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCce
Confidence 78899999999998742 3467799999942 221 12245556667799999999999999999
Q ss_pred EEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEE
Q psy2145 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202 (808)
Q Consensus 123 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~ 202 (808)
|+|............-.|++.. |-.+.+.........-+..+
T Consensus 102 Y~C~fQkge~~~~k~ehLt~V~--------------------------------------~~~Lsv~a~~~dFp~~~~~~ 143 (221)
T PHA03376 102 YLCRMKLGETEVTKQEHLSVVK--------------------------------------PLTLSVHSERSQFPDFSVLT 143 (221)
T ss_pred EEEEEEcCCCceeeeeeeeeee--------------------------------------cceEEEEeccccCCCCCeeE
Confidence 9999986443333333333221 01111111111111245678
Q ss_pred EEEEEeecCCCCeEEEEeeCC
Q psy2145 203 FECRLIPVSDNTMKVEWFHNN 223 (808)
Q Consensus 203 L~C~~~~~~~p~~~v~W~~~g 223 (808)
+.|.+ .+.|.|.++|+-+.
T Consensus 144 i~C~s--ggfP~P~~~Wle~~ 162 (221)
T PHA03376 144 VTCTV--NAFPHPHVQWLMPE 162 (221)
T ss_pred EEEec--CCcCCchheecccc
Confidence 99995 69999999998754
No 213
>smart00409 IG Immunoglobulin.
Probab=98.93 E-value=1.2e-08 Score=84.17 Aligned_cols=83 Identities=31% Similarity=0.530 Sum_probs=69.9
Q ss_pred CCccccCCCCcEEEEEEEeeCCCCCceEEEEeC-CEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceE
Q psy2145 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKN-GRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135 (808)
Q Consensus 57 ~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~-g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 135 (808)
..+ .+.+|+++.|.|.+.+ .+.+.+.|+++ +..+....++.........+|.|.++..+|+|.|+|.+.+..+...
T Consensus 2 ~~~-~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00409 2 PSV-TVKEGESVTLSCEVSG--SPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred CcE-EEeCCCeEEEEEEEcc--CCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 344 6789999999999995 47789999998 8888767788777666667899999999999999999998888777
Q ss_pred EEEEEEE
Q psy2145 136 VQATLQC 142 (808)
Q Consensus 136 ~~~~l~V 142 (808)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00409 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 7766665
No 214
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.93 E-value=1.2e-08 Score=84.17 Aligned_cols=83 Identities=31% Similarity=0.530 Sum_probs=69.9
Q ss_pred CCccccCCCCcEEEEEEEeeCCCCCceEEEEeC-CEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceE
Q psy2145 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKN-GRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135 (808)
Q Consensus 57 ~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~-g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 135 (808)
..+ .+.+|+++.|.|.+.+ .+.+.+.|+++ +..+....++.........+|.|.++..+|+|.|+|.+.+..+...
T Consensus 2 ~~~-~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00410 2 PSV-TVKEGESVTLSCEVSG--SPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred CcE-EEeCCCeEEEEEEEcc--CCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 344 6789999999999995 47789999998 8888767788777666667899999999999999999998888777
Q ss_pred EEEEEEE
Q psy2145 136 VQATLQC 142 (808)
Q Consensus 136 ~~~~l~V 142 (808)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00410 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 7766665
No 215
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.93 E-value=1.6e-09 Score=89.07 Aligned_cols=71 Identities=23% Similarity=0.465 Sum_probs=58.3
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEe-cCCCCCeEEEeeCcEEEEEECCCCCCCCE-EEEEEEEeCCeeE
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKP-LEDSSRITTKHDFGYVAMDLSHVRAEDEG-IYICKATNALGEA 588 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~~ 588 (808)
..|.+|+.+.|.|.. |.|.|.|.|.|++++.. +..+.|+.+..+ | .|.|.++..+|+| .|.|.|.|.....
T Consensus 13 v~V~eG~~~~L~C~p-P~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~-G--nL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 13 VEVEEGDSVVLPCNP-PKSAVPLRIYWMNSDLLHITQDERVSMGQN-G--NLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred eEEecCCCEEEEecC-CCCCCCCEEEEECCCCccccccccEEECCC-c--eEEEEEEehhhCCCCeEEEEEcccccc
Confidence 368999999999973 48999999999988754 455667766655 3 7999999999999 8999999986433
No 216
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.93 E-value=6.9e-09 Score=85.22 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=57.8
Q ss_pred CCceEEEEEEeeCCCC--CcEEEEEECCEecCCC---C--CeEE-EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE
Q psy2145 519 GKNAHFSCRLIPVGDP--TLKVEWFRNEKPLEDS---S--RITT-KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P--~~~v~W~k~g~~l~~~---~--~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 590 (808)
|+++.|.|.+ .++| ...+.|.+.+..+... . +... ......+.|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 Ge~~~L~C~~--~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTA--RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEE--EeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 7899999999 5544 5678999887644221 1 1111 11123458999999999999999999999999999
Q ss_pred EEEEEEE
Q psy2145 591 TASMKIK 597 (808)
Q Consensus 591 s~~l~V~ 597 (808)
+..|.|+
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 9999886
No 217
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.92 E-value=8.9e-09 Score=85.40 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=58.4
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc----cCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE-eCc
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI----KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV-NAL 264 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l----~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-n~~ 264 (808)
.+.+.+|++++|.|.. +.|.+.+.|||+ |... ....++.... + .|.|.+++.+|+|.|+|.|. |..
T Consensus 5 ~~~~~eG~~v~L~C~~---~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~--~--~L~I~~~~~~DsG~Y~C~a~~~~~ 77 (91)
T cd05871 5 VVYGVENNSTFLECLP---KSPQASVKWLFQRGGDQRKEEVKTEERLIHTE--R--GLLLRSLQRSDAGVYTCTAVEHSF 77 (91)
T ss_pred EEEEecCCcEEEEEEC---CCCCceEEEEEECCCCCccccccccccEEEec--C--eEEEeeCChhHCEEEEEEEEccCC
Confidence 3567899999999986 478889999983 3221 1233444322 2 69999999999999999998 577
Q ss_pred eeEEEEEEEEEe
Q psy2145 265 GQAVTSGNLLVH 276 (808)
Q Consensus 265 g~~~~~~~l~V~ 276 (808)
+.....++|.|.
T Consensus 78 ~~~~~~~~l~v~ 89 (91)
T cd05871 78 SQTLAKYTLHVI 89 (91)
T ss_pred eEEEEEEEEEEe
Confidence 777778888875
No 218
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.91 E-value=5.9e-09 Score=80.28 Aligned_cols=63 Identities=30% Similarity=0.643 Sum_probs=51.5
Q ss_pred CCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCe
Q psy2145 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG 586 (808)
Q Consensus 518 ~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 586 (808)
+|+.+.|.|.+ .+.|.+.+.|++++..+.. ....... ...|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~--~~~~~~~v~W~~~~~~~~~--~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA--EGDPVPNITWLKDGKPLPE--SNRLSAS--GSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC--ccCCCCeEEEEECCEECCC--CCEEecC--CcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999997 7899999999999998872 2222222 23799999999999999999999865
No 219
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.90 E-value=1.6e-08 Score=83.62 Aligned_cols=70 Identities=14% Similarity=0.322 Sum_probs=55.2
Q ss_pred CccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEe--------eccCcEEEEe-eCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 58 SIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPV--------TIGHRFRPIH-DFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 58 ~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l--------~~~~r~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
++ .+.+|++++|+|.+.. .....+.|++-|..+ ..+.||.... ++..++|.|.+++.+|+|.|.|.+.
T Consensus 6 nv-tv~~G~ta~L~C~v~~--~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 6 DV-TVVEGEVAIISCRVKN--NDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred ce-EEcCCCcEEEEEEEcc--CCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 45 7899999999999995 445567888755332 3567888765 5667899999999999999999997
Q ss_pred ec
Q psy2145 129 NL 130 (808)
Q Consensus 129 n~ 130 (808)
..
T Consensus 83 t~ 84 (95)
T cd05881 83 TD 84 (95)
T ss_pred cc
Confidence 53
No 220
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.87 E-value=1.8e-08 Score=82.11 Aligned_cols=78 Identities=37% Similarity=0.666 Sum_probs=59.3
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
|.+...+ ..+.+|+++.|.|.+ .+.|...+.|++++..+..+.. .|.|.++..+|.|.|+|.|.+.
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~--~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~ 67 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSV--SGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNG 67 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEE--ESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEET
T ss_pred cEEEccc--eEEeCCCcEEEEEEE--Ecccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeC
Confidence 4454444 568899999999999 4788899999999988763322 2667889999999999999996
Q ss_pred ce-eEEEEEEEEE
Q psy2145 264 LG-QAVTSGNLLV 275 (808)
Q Consensus 264 ~g-~~~~~~~l~V 275 (808)
.+ ..+.++.|+|
T Consensus 68 ~~~~~s~~~~v~V 80 (80)
T PF13895_consen 68 SGSNTSTSVNVTV 80 (80)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CCCeEeeeEEeeC
Confidence 55 4445566654
No 221
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.86 E-value=9.2e-09 Score=84.92 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=60.7
Q ss_pred cccCCceEEEEEEEee---------CCCCCeEEEEEECCEEccCCCc-----EEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVP---------VGDPTMRFEWFVNGVELKMGSR-----FHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~---------~g~P~p~i~W~~~g~~l~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
.+.+|+.+.|.|..-. ...+...|.|||+|..+..... .++...+. .|.|.++..+|+|.|+|+
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTCV 88 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEEE
Confidence 5789999999998610 0233558999999876665431 24444444 899999999999999999
Q ss_pred EEeCCcceEEEEEEEE
Q psy2145 713 AINRAGEAVSSTSLKV 728 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V 728 (808)
+.|.-.-...++.|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9999888777777765
No 222
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.85 E-value=3.2e-08 Score=81.53 Aligned_cols=82 Identities=16% Similarity=0.304 Sum_probs=67.4
Q ss_pred ccccCCCceEEEEEEeeCCCCCcE-EEEEECCEecCCCCC--eEEEeeC---cEEEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKPLEDSSR--ITTKHDF---GYVAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~l~~~~~--~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
+.|.+|+.+.|.|.+ .+.|.|+ +.|.+++..+..... +...... -.+.|.+.+++.+|+|.|+|.|.|+.++
T Consensus 13 ~~v~~gE~~~L~V~i--eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 13 IFVNAGENLDLIVEY--EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred EEEECCCCEEEEEEE--EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 468999999999999 8999998 999999887754433 2221111 2357999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy2145 588 AVTTASMKIK 597 (808)
Q Consensus 588 ~~~s~~l~V~ 597 (808)
.+.++.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999999885
No 223
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.84 E-value=1.4e-08 Score=81.88 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=59.4
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
.++.+|+++.|.|.. ..+...+.|++||.+|..+.++....++ |.|..+...|+|.|.|.|. +.|-...-+.
T Consensus 6 ~tv~~g~~v~L~C~~---~s~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~ 77 (85)
T cd05872 6 RTVAPGADVVLPCQL---RSNLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVAS 77 (85)
T ss_pred EEEecCCCEEEECCC---CCCCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence 468899999999988 4457799999999999888887776653 8899999999999999986 4454444444
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
+.+
T Consensus 78 y~l 80 (85)
T cd05872 78 YSL 80 (85)
T ss_pred EEE
Confidence 333
No 224
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.83 E-value=1.3e-08 Score=84.19 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=55.3
Q ss_pred ccCCCCcEEEEEEE-eeC--CCCCceEEEEeCCEEeeccC-cEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceE
Q psy2145 61 NLRERGHAHFECKL-EPV--TDSNLKVEWFKNGRPVTIGH-RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135 (808)
Q Consensus 61 ~v~~G~~v~l~C~~-~~~--~~p~~~v~W~~~g~~l~~~~-r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 135 (808)
.+.+|.+..|.|-- ..+ ..+.+.|+||||+.+|..+. ++....+. ..|.|.++..+|+|.|+|.|.+..|...
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~--~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGS--TYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCC--CEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 56789999999952 222 45777999999999988554 33322222 2699999999999999999999876543
No 225
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.83 E-value=9.4e-09 Score=79.55 Aligned_cols=62 Identities=32% Similarity=0.546 Sum_probs=49.0
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEE--EEEEccCCCCCcEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV--TLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~A 713 (808)
|+++.|.|.+. .+.|.+.|.|+|+|..+............... .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVS-SGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEE-ESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecC-CCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 78999999993 58889999999999877655444443333321 3999999999999999986
No 226
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.83 E-value=2.5e-08 Score=79.16 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=50.1
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC----cEEEEEECCCCCCCCEEEEEEEEeCCeeE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF----GYVAMDLSHVRAEDEGIYICKATNALGEA 588 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 588 (808)
++|+|... .|.|++.|+|||||++|..... . ...+ ...+|.|.....+|.+.|+|+|.|.++..
T Consensus 2 ~~L~C~s~-~skP~a~i~W~k~~~~l~~~~~-~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSP-RSKPAATLRWYRDRKELKGVIS-Q-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCC-CccCCCeEEEEECCEECCCCcc-c-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 78999975 8999999999999999965321 1 1111 12369999999999999999999998753
No 227
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.82 E-value=5.1e-08 Score=80.69 Aligned_cols=69 Identities=19% Similarity=0.371 Sum_probs=55.3
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEc--------cCCCcEEEEE-eCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL--------KMGSRFHVQH-DFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
..++.+|++++|.|.+ .+.....+.|++-|..+ ..++||.+.. ++...+|+|.+++.+|+|.|.|.+..
T Consensus 6 nvtv~~G~ta~L~C~v--~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 6 DVTVVEGEVAIISCRV--KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred ceEEcCCCcEEEEEEE--ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 3578899999999999 67666777887655332 3678888776 45677999999999999999999865
No 228
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.81 E-value=1.4e-08 Score=78.54 Aligned_cols=62 Identities=29% Similarity=0.483 Sum_probs=48.2
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeE--EEEEcccCcCCCeeEEEEE
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV--ALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a 127 (808)
|++++|.|.+.. +.+...|.|+|++..+............... +|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSS-GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEE-SSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCC-CCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 899999999932 5788899999999877655444443333321 3999999999999999986
No 229
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.79 E-value=2.2e-08 Score=82.75 Aligned_cols=80 Identities=16% Similarity=0.341 Sum_probs=59.4
Q ss_pred cccCCCceEEEEEEee---------CCCCCcEEEEEECCEecCCCCC-----eEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIP---------VGDPTLKVEWFRNEKPLEDSSR-----ITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~---------~g~P~~~v~W~k~g~~l~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+.+|+.+.|.|.... ...+...+.|+|++..+..... .++...+. .|.|.++..+|+|.|+|+
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTCV 88 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEEE
Confidence 5889999999998621 0233457999999866554331 13333333 799999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy2145 581 ATNALGEAVTTASMKI 596 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V 596 (808)
+.|+......++.|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9999887777777664
No 230
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.76 E-value=3.5e-08 Score=79.54 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=62.2
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
++.+|+.+.|.|.. ..+.+.+.|++||..+..+.++....++ |.|..++.+|+|.|.|.+. +.|.....+.+
T Consensus 7 tv~~g~~v~L~C~~---~s~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y 78 (85)
T cd05872 7 TVAPGADVVLPCQL---RSNLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVASY 78 (85)
T ss_pred EEecCCCEEEECCC---CCCCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEEE
Confidence 68899999999987 4457799999999999877777666553 8899999999999999987 56777766666
Q ss_pred EEEe
Q psy2145 595 KIKT 598 (808)
Q Consensus 595 ~V~~ 598 (808)
.+..
T Consensus 79 ~l~v 82 (85)
T cd05872 79 SLNV 82 (85)
T ss_pred EEEE
Confidence 6654
No 231
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.74 E-value=5.4e-08 Score=79.51 Aligned_cols=72 Identities=26% Similarity=0.384 Sum_probs=51.4
Q ss_pred EEEEEEEeeCC-CCCeEEEEEECCEEccCCCcEE-EEEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcce--EEEEE
Q psy2145 654 AHYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFH-VQHDFG----YVTLDITKCVPADSGVYMCKAINRAGEA--VSSTS 725 (808)
Q Consensus 654 v~l~C~v~~~g-~P~p~i~W~~~g~~l~~~~~~~-~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~--~~s~~ 725 (808)
+.|.|.+ .| .|.+.|+|++||++|..+.... +..+++ .+.|.|.....+|.|.|+|.|.|..... ..+.+
T Consensus 2 ~~L~C~v--~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 2 YNLTCRA--RGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEEE--eCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 6899999 55 7999999999999986542211 112222 3578888888889999999999987544 44444
Q ss_pred EE
Q psy2145 726 LK 727 (808)
Q Consensus 726 l~ 727 (808)
|.
T Consensus 80 l~ 81 (82)
T cd05759 80 LD 81 (82)
T ss_pred Ec
Confidence 43
No 232
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.68 E-value=1.3e-07 Score=81.61 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=59.5
Q ss_pred CCceEEEEEEEeeC----CCCCeEEEEEECCE------E--ccC----------CCcEEEEEe-CCEEEEEEccCCCCCc
Q psy2145 650 EGQSAHYDCRVVPV----GDPTMRFEWFVNGV------E--LKM----------GSRFHVQHD-FGYVTLDITKCVPADS 706 (808)
Q Consensus 650 ~G~~v~l~C~v~~~----g~P~p~i~W~~~g~------~--l~~----------~~~~~~~~~-~~~~~L~I~~v~~~D~ 706 (808)
.|++|+|.|.+... +.....|.|+|... . +.. ..|+.+... .+..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999998422 12356899998531 1 111 134444321 3457899999999999
Q ss_pred EEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 707 GVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 707 G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
|.|.|.+.|..|..+..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999999999999975
No 233
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.67 E-value=1.7e-07 Score=79.93 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=54.7
Q ss_pred CceEEEEEEEeeC-CCCCeEEEEEECC-----------EEccC------CCcEEEEE---eCCEEEEEEccCCCCCcEEE
Q psy2145 651 GQSAHYDCRVVPV-GDPTMRFEWFVNG-----------VELKM------GSRFHVQH---DFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 651 G~~v~l~C~v~~~-g~P~p~i~W~~~g-----------~~l~~------~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y 709 (808)
|++|+|.|.+.+. ..-...|.|+|.. ..... .+|+.+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7889999998422 1112467787743 22110 13444432 24567999999999999999
Q ss_pred EEEEEeCCcceEEEEEEEE
Q psy2145 710 MCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 710 ~C~A~N~~G~~~~s~~l~V 728 (808)
+|.+.|..|..+..+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999999888888888877
No 234
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.66 E-value=1.5e-07 Score=81.26 Aligned_cols=81 Identities=27% Similarity=0.399 Sum_probs=59.0
Q ss_pred CCceEEEEEEEeeCC----CCCeEEEEEECC------EEc--cCCCc------E--EEE---EeCCEEEEEEccCCCCCc
Q psy2145 650 EGQSAHYDCRVVPVG----DPTMRFEWFVNG------VEL--KMGSR------F--HVQ---HDFGYVTLDITKCVPADS 706 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g----~P~p~i~W~~~g------~~l--~~~~~------~--~~~---~~~~~~~L~I~~v~~~D~ 706 (808)
.|++|+|.|.+.+.. ...+.|.|+|.. ..+ ..+.. + ++. ...+..+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 389999999994221 236799999962 111 11111 1 111 123568999999999999
Q ss_pred EEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 707 GVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 707 G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
|.|.|.+.|..+..+..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999999999999999975
No 235
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.65 E-value=1.7e-07 Score=76.56 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=51.4
Q ss_pred cEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE-EEeeCC----eEEEEEcccCcCCCeeEEEEEEecCcce--EEEEE
Q psy2145 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFG----YVALDIIDTIPEDSGTYTCRAVNLVGFA--EVQAT 139 (808)
Q Consensus 67 ~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~-~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g~~--~~~~~ 139 (808)
.+.|.|.+.+ +.|.+.|+|+|+|++|..+.... ...+++ ...|.|.....+|.|.|+|+|.|..... +.+.+
T Consensus 1 ~~~L~C~v~g-~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 1 PYNLTCRARG-AKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred CEEEEEEEeC-ccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 3689999996 47888999999999886542211 122222 2468888888889999999999876443 34444
Q ss_pred E
Q psy2145 140 L 140 (808)
Q Consensus 140 l 140 (808)
|
T Consensus 80 l 80 (82)
T cd05759 80 L 80 (82)
T ss_pred E
Confidence 4
No 236
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.63 E-value=1e-07 Score=79.34 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=55.9
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.+...+. ..|.+|++|+|.|.. ..+...+.|+|+|...... . .........|.|.+|+.+|+|.|+|.+.
T Consensus 2 kP~L~a~p~--~vV~~G~~VtL~C~~---~~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 2 KPSLWAEPS--SVVPLGKPVTLRCQG---PYGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CCEEEecCC--CccCCCCcEEEEEec---CCCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEE
Confidence 455555443 368899999999986 5788899999999865421 1 1112334589999999999999999999
Q ss_pred eC
Q psy2145 715 NR 716 (808)
Q Consensus 715 N~ 716 (808)
|.
T Consensus 74 ~~ 75 (91)
T cd05751 74 SG 75 (91)
T ss_pred CC
Confidence 97
No 237
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.63 E-value=1.4e-07 Score=82.00 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=56.8
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCE---Ee-----------eccCcEEEEee--CCeEEEEEcccCcC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGR---PV-----------TIGHRFRPIHD--FGYVALDIIDTIPE 118 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~---~l-----------~~~~r~~~~~~--~~~~~L~I~~~~~~ 118 (808)
.|..+ .+.+|++|+|.|.+.. .+...+.|||... +. ....|+.+..+ .+.++|.|.+++.+
T Consensus 4 ~~~~v-~~~~G~~v~L~C~~~~--~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 4 SPQSL-SVQEGENVTLNCNYST--STFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS 80 (109)
T ss_pred cCCce-EEcCCCCEEEEEEECC--CCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence 45566 8999999999999984 4777999998431 11 12356665543 37789999999999
Q ss_pred CCeeEEEEEEecC
Q psy2145 119 DSGTYTCRAVNLV 131 (808)
Q Consensus 119 D~G~Y~C~a~n~~ 131 (808)
|+|.|.|.+.+..
T Consensus 81 DsG~Y~C~~~~~~ 93 (109)
T cd04983 81 DSAVYFCALSESG 93 (109)
T ss_pred HCEEEEEEEecCC
Confidence 9999999998754
No 238
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.61 E-value=1.9e-07 Score=81.22 Aligned_cols=71 Identities=23% Similarity=0.381 Sum_probs=55.9
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCE---Ec-----------cCCCcEEEEEe--CCEEEEEEccCCCCCcEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV---EL-----------KMGSRFHVQHD--FGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~---~l-----------~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y 709 (808)
..+.+|++|+|.|.+ .+.+...+.|||... +. ...+|+.+..+ .+..+|+|.+++.+|+|.|
T Consensus 8 v~~~~G~~v~L~C~~--~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 8 LSVQEGENVTLNCNY--STSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred eEEcCCCCEEEEEEE--CCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 468899999999999 666888999998431 10 13467766543 4678999999999999999
Q ss_pred EEEEEeCCc
Q psy2145 710 MCKAINRAG 718 (808)
Q Consensus 710 ~C~A~N~~G 718 (808)
.|.+.|..|
T Consensus 86 ~C~~~~~~~ 94 (109)
T cd04983 86 FCALSESGG 94 (109)
T ss_pred EEEEecCCC
Confidence 999998754
No 239
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.60 E-value=8.6e-08 Score=76.84 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=48.0
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
|.+...... .+..+..++|.|.+ .+.| .+.|.|+ ++......... ......++|.|.++..+|.|.|+|.|+
T Consensus 2 P~I~~~~~~--~~~~~~~~~l~C~~--~~~~~~~~~~W~-~~~~~~~~~~~--~~~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 2 PQISVPPPP--VVTSGGSVTLTCSA--EGGPPPPSISWY-DSNPSFNSNSR--GSSSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp SEEEEESTS--EEETTEEEEEEEEE--SSEESSEEEEEE-TEEEEEEEEEE--EEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred CEEEEcCCC--cEeeceeEEEEEEE--ccccCCeEEEEE-ecCCceeeeee--eccceeeEEEEccCCHHhCcEEEEEEE
Confidence 555555443 22233339999999 6777 9999999 22211111111 112234589999999999999999999
Q ss_pred e
Q psy2145 715 N 715 (808)
Q Consensus 715 N 715 (808)
|
T Consensus 75 N 75 (75)
T PF13927_consen 75 N 75 (75)
T ss_dssp E
T ss_pred C
Confidence 8
No 240
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.60 E-value=2.9e-07 Score=79.14 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=59.6
Q ss_pred CCceEEEEEEEeeCCCC----------CeEEEEEEC--CEE---cc-C----------CCcEEEEE---eCCEEEEEEcc
Q psy2145 650 EGQSAHYDCRVVPVGDP----------TMRFEWFVN--GVE---LK-M----------GSRFHVQH---DFGYVTLDITK 700 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P----------~p~i~W~~~--g~~---l~-~----------~~~~~~~~---~~~~~~L~I~~ 700 (808)
.|++|+|.|.+.....+ .+.|.|+|- |.. +. . .+|+.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 38999999999521111 469999983 311 10 0 13555544 33567999999
Q ss_pred CCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 701 CVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 701 v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
++.+|+|.|.|.+.+..........|.|++
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999999888888888888875
No 241
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.59 E-value=4.7e-07 Score=78.16 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=58.3
Q ss_pred CCCcEEEEEEEeeCC----CCCceEEEEeCCE------E-e-ec----------cCcEEEEee-CCeEEEEEcccCcCCC
Q psy2145 64 ERGHAHFECKLEPVT----DSNLKVEWFKNGR------P-V-TI----------GHRFRPIHD-FGYVALDIIDTIPEDS 120 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~----~p~~~v~W~~~g~------~-l-~~----------~~r~~~~~~-~~~~~L~I~~~~~~D~ 120 (808)
.|++|+|.|.+.... .....|.|+|... . + .. ..|+.+... .+..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987421 2346799999531 1 1 11 134443222 3456899999999999
Q ss_pred eeEEEEEEecCcceEEEEEEEEec
Q psy2145 121 GTYTCRAVNLVGFAEVQATLQCRG 144 (808)
Q Consensus 121 G~Y~C~a~n~~g~~~~~~~l~V~~ 144 (808)
|.|+|.+.+..+..+..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888888888888853
No 242
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.59 E-value=3.5e-07 Score=78.01 Aligned_cols=78 Identities=27% Similarity=0.426 Sum_probs=54.4
Q ss_pred CCcEEEEEEEeeC-CCCCceEEEEeCC--EEee---c------------cCcEEEEe---eCCeEEEEEcccCcCCCeeE
Q psy2145 65 RGHAHFECKLEPV-TDSNLKVEWFKNG--RPVT---I------------GHRFRPIH---DFGYVALDIIDTIPEDSGTY 123 (808)
Q Consensus 65 G~~v~l~C~~~~~-~~p~~~v~W~~~g--~~l~---~------------~~r~~~~~---~~~~~~L~I~~~~~~D~G~Y 123 (808)
|++|+|.|.+.+. ......|.|+|.. ..+. . ..|+.+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999999741 1122478898844 1111 0 12444322 23567999999999999999
Q ss_pred EEEEEecCcceEEEEEEEE
Q psy2145 124 TCRAVNLVGFAEVQATLQC 142 (808)
Q Consensus 124 ~C~a~n~~g~~~~~~~l~V 142 (808)
+|.+.|..+..+..+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999988777777777766
No 243
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.58 E-value=4.5e-07 Score=78.61 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=58.3
Q ss_pred CCCCccccCCCCcEEEEEEEeeCC--CCCceEEEE---------------eCCEEeec-----cCcEEEEe--eCCeEEE
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVT--DSNLKVEWF---------------KNGRPVTI-----GHRFRPIH--DFGYVAL 110 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~--~p~~~v~W~---------------~~g~~l~~-----~~r~~~~~--~~~~~~L 110 (808)
.|..+ .+..|+.++|.|.+.... .+.+.|.|. ++|+.... ..|+.... ..+..+|
T Consensus 4 ~~~ev-~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI 82 (116)
T cd05879 4 TDREV-YGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSI 82 (116)
T ss_pred ccceE-EEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEE
Confidence 45666 889999999999998521 245799993 34444321 12444332 2366799
Q ss_pred EEcccCcCCCeeEEEEEEecCcceEEEEE
Q psy2145 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQAT 139 (808)
Q Consensus 111 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 139 (808)
.|.+++.+|+|.|+|.+.|..+......+
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~ 111 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPPDIVGKSSQ 111 (116)
T ss_pred EEccCCcccCEEEEEEEEcCCCcCCceeE
Confidence 99999999999999999987654333333
No 244
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.55 E-value=7.1e-07 Score=77.00 Aligned_cols=81 Identities=28% Similarity=0.427 Sum_probs=57.9
Q ss_pred CCCcEEEEEEEeeCC----CCCceEEEEeCC-----E-Eee--ccCc------E--EEE---eeCCeEEEEEcccCcCCC
Q psy2145 64 ERGHAHFECKLEPVT----DSNLKVEWFKNG-----R-PVT--IGHR------F--RPI---HDFGYVALDIIDTIPEDS 120 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~----~p~~~v~W~~~g-----~-~l~--~~~r------~--~~~---~~~~~~~L~I~~~~~~D~ 120 (808)
.|++|+|.|.+.... ...+.|.|+|.. . .+. .+.+ + +.. ...+..+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999998521 235699999962 1 111 1111 1 111 134667999999999999
Q ss_pred eeEEEEEEecCcceEEEEEEEEec
Q psy2145 121 GTYTCRAVNLVGFAEVQATLQCRG 144 (808)
Q Consensus 121 G~Y~C~a~n~~g~~~~~~~l~V~~ 144 (808)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999878788888888863
No 245
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.53 E-value=6.3e-07 Score=76.01 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=55.5
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCE-----Ec---c-----------CCCceEEEecCceEEEEEccCC
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV-----PI---K-----------SGSRFTETNNFGFVALDIMQCL 249 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~-----~l---~-----------~~~~~~~~~~~~~~~L~I~~~~ 249 (808)
.+.+..+.+|++|.|.|.. ...+...+.|||... .| . -..|..+..+ | +|.|.+++
T Consensus 4 e~~p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n-g--SL~I~~v~ 78 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN-G--SLLIQNVT 78 (105)
T ss_pred eccCCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC-C--cEEEecCC
Confidence 4445568899999999986 355667999999521 11 0 1223333332 3 89999999
Q ss_pred CCCcEEEEEEEEeCc-eeEEEEEEEE
Q psy2145 250 PEDSGVYTCRAVNAL-GQAVTSGNLL 274 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~~-g~~~~~~~l~ 274 (808)
.+|+|.|+|.+.+.. ........|.
T Consensus 79 ~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 79 QKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred cccCEEEEEEEEeCCccEEEEEEEEE
Confidence 999999999999866 3344445544
No 246
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.52 E-value=5.9e-07 Score=77.22 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=56.6
Q ss_pred CCCcEEEEEEEeeCCCC----------CceEEEEeC--CE---Eee-c----------cCcEEEEe---eCCeEEEEEcc
Q psy2145 64 ERGHAHFECKLEPVTDS----------NLKVEWFKN--GR---PVT-I----------GHRFRPIH---DFGYVALDIID 114 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p----------~~~v~W~~~--g~---~l~-~----------~~r~~~~~---~~~~~~L~I~~ 114 (808)
.|++|+|.|.......+ .+.|.|+|. |. .+. . ..|+.+.. ..+..+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48999999999842111 469999983 21 111 1 13555543 33667999999
Q ss_pred cCcCCCeeEEEEEEecCcceEEEEEEEEe
Q psy2145 115 TIPEDSGTYTCRAVNLVGFAEVQATLQCR 143 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 143 (808)
++.+|+|.|+|.+.+..........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999866666777777765
No 247
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.52 E-value=5.1e-07 Score=76.58 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=53.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCC-----EEee--------------ccCcEEEEeeCCeEEEEEcccCcCCCe
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNG-----RPVT--------------IGHRFRPIHDFGYVALDIIDTIPEDSG 121 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g-----~~l~--------------~~~r~~~~~~~~~~~L~I~~~~~~D~G 121 (808)
.+.+|++|.|.|... +.+...+.|||+. ..|. ...|..+..++ +|.|.+++.+|+|
T Consensus 9 ~~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G 83 (105)
T cd05774 9 QVAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTG 83 (105)
T ss_pred cccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCE
Confidence 578999999999865 3566699999952 2221 12344444333 7999999999999
Q ss_pred eEEEEEEecC-cceEEEEEEE
Q psy2145 122 TYTCRAVNLV-GFAEVQATLQ 141 (808)
Q Consensus 122 ~Y~C~a~n~~-g~~~~~~~l~ 141 (808)
.|+|.+.+.. ........|.
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEE
Confidence 9999999876 3444445443
No 248
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.52 E-value=7.9e-07 Score=76.79 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=57.5
Q ss_pred CCcEEEEEEEeeCCCC--------CceEEEEeC--CEEee----c----------cCcEEEE---eeCCeEEEEEcccCc
Q psy2145 65 RGHAHFECKLEPVTDS--------NLKVEWFKN--GRPVT----I----------GHRFRPI---HDFGYVALDIIDTIP 117 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p--------~~~v~W~~~--g~~l~----~----------~~r~~~~---~~~~~~~L~I~~~~~ 117 (808)
|++|+|.|.+.....+ ...|.|+|. ++.+. . .+|+.+. .+.+..+|.|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 8999999999742111 368999984 22211 0 1244442 234667899999999
Q ss_pred CCCeeEEEEEEecCcceEEEEEEEEec
Q psy2145 118 EDSGTYTCRAVNLVGFAEVQATLQCRG 144 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 144 (808)
+|+|.|.|.+.......+..+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999998767778888888853
No 249
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.52 E-value=3.8e-07 Score=78.70 Aligned_cols=70 Identities=29% Similarity=0.493 Sum_probs=54.5
Q ss_pred cccCCceEEEEEEEeeCCC-CCeEEEEEECCE-----Ec------------cCCCcEEEEEeC--CEEEEEEccCCCCCc
Q psy2145 647 EIMEGQSAHYDCRVVPVGD-PTMRFEWFVNGV-----EL------------KMGSRFHVQHDF--GYVTLDITKCVPADS 706 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~-P~p~i~W~~~g~-----~l------------~~~~~~~~~~~~--~~~~L~I~~v~~~D~ 706 (808)
.+.+|++|+|.|.+ .+. +...+.|+|... .+ ...+|+.+..+. +..+|+|.+++.+|+
T Consensus 2 ~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTY--SGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEE--eCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence 46789999999999 454 788999998432 11 123566665554 678999999999999
Q ss_pred EEEEEEEEeCCc
Q psy2145 707 GVYMCKAINRAG 718 (808)
Q Consensus 707 G~Y~C~A~N~~G 718 (808)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999998876
No 250
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.52 E-value=7.9e-07 Score=77.07 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=53.8
Q ss_pred cCceeecCCCeEEEEEEEeecC--CCCeEEEE---------------eeCCEEccC-C----CceEEEe--cCceEEEEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVS--DNTMKVEW---------------FHNNVPIKS-G----SRFTETN--NFGFVALDI 245 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~--~p~~~v~W---------------~~~g~~l~~-~----~~~~~~~--~~~~~~L~I 245 (808)
+..+.+..|+.++|.|.+.... .+.+.|.| |++|..... . .|..... ..+..+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 4457788999999999996322 34689999 334444321 1 2333222 236679999
Q ss_pred ccCCCCCcEEEEEEEEeCce
Q psy2145 246 MQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~~g 265 (808)
.+++.+|.|.|+|.+.|..+
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred ccCCcccCEEEEEEEEcCCC
Confidence 99999999999999999654
No 251
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.51 E-value=3.8e-07 Score=79.31 Aligned_cols=74 Identities=18% Similarity=0.316 Sum_probs=55.1
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EEee----------------ccCcEEEEeeC-CeEEEEEcc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RPVT----------------IGHRFRPIHDF-GYVALDIID 114 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~l~----------------~~~r~~~~~~~-~~~~L~I~~ 114 (808)
..|..+ .+.+|++|+|.|.+.. +...+.|||.. ..+. ...|+....+. ..++|.|.+
T Consensus 3 Q~p~~~-~v~~G~~v~l~C~~~~---~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 78 (110)
T cd05899 3 QSPRYL-IKGRGQSVTLRCSQTS---GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKS 78 (110)
T ss_pred ECCCce-EEcCCCcEEEEEEECC---CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECC
Confidence 356677 8999999999999973 56789999943 1111 12455554433 567999999
Q ss_pred cCcCCCeeEEEEEEecC
Q psy2145 115 TIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~ 131 (808)
++.+|+|.|.|.+.+..
T Consensus 79 ~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 79 AEPEDSAVYLCASSLGG 95 (110)
T ss_pred CChhhCEEEEEEeeCCC
Confidence 99999999999998653
No 252
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.51 E-value=4.2e-07 Score=75.68 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=53.6
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEe
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATN 583 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 583 (808)
|.+...+.. .|.+|++|+|.|.. ..+...+.|+|+|...... . .........|.|.+++.+|+|.|+|.+.|
T Consensus 3 P~L~a~p~~--vV~~G~~VtL~C~~---~~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~ 74 (91)
T cd05751 3 PSLWAEPSS--VVPLGKPVTLRCQG---PYGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRS 74 (91)
T ss_pred CEEEecCCC--ccCCCCcEEEEEec---CCCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEEC
Confidence 444444333 48899999999985 5778889999999864421 1 11122334799999999999999999998
Q ss_pred C
Q psy2145 584 A 584 (808)
Q Consensus 584 ~ 584 (808)
.
T Consensus 75 ~ 75 (91)
T cd05751 75 G 75 (91)
T ss_pred C
Confidence 6
No 253
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.50 E-value=4.5e-07 Score=78.23 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=53.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCE-----Eee------------ccCcEEEEeeC--CeEEEEEcccCcCCCe
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGR-----PVT------------IGHRFRPIHDF--GYVALDIIDTIPEDSG 121 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~-----~l~------------~~~r~~~~~~~--~~~~L~I~~~~~~D~G 121 (808)
.+.+|++++|.|.+... .+...+.|||... .+. ...|+.+..+. +.++|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCC-cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 57899999999999841 2667899998432 111 12456555444 6789999999999999
Q ss_pred eEEEEEEecCc
Q psy2145 122 TYTCRAVNLVG 132 (808)
Q Consensus 122 ~Y~C~a~n~~g 132 (808)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987654
No 254
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.47 E-value=5.2e-07 Score=77.82 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=55.4
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC-CceEEEEeCC-----EEee---------ccCcEEEEeeCCeEEEEEcccCc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS-NLKVEWFKNG-----RPVT---------IGHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p-~~~v~W~~~g-----~~l~---------~~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
...|..+ .+.+|++|+|.|.+.. .. ...+.|||.. ..|. ...|+....+...+.|.|.+++.
T Consensus 4 ~Q~p~~~-~v~~G~~v~L~C~~~~--~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~ 80 (106)
T cd04980 4 TQSPATL-SVSPGESATISCKASQ--SVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEP 80 (106)
T ss_pred EECCCcE-EECCCCCEEEEEEECC--CCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCCh
Confidence 3456676 8999999999999974 33 5689999832 1121 12356655555667899999999
Q ss_pred CCCeeEEEEEEec
Q psy2145 118 EDSGTYTCRAVNL 130 (808)
Q Consensus 118 ~D~G~Y~C~a~n~ 130 (808)
+|+|.|.|.+.+.
T Consensus 81 ~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 81 EDAAVYYCQQYGT 93 (106)
T ss_pred HHCEEEEEEEeCC
Confidence 9999999998653
No 255
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.46 E-value=1.4e-06 Score=75.24 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=58.8
Q ss_pred CceEEEEEEEeeCCCC--------CeEEEEEEC--CEEcc----------C----CCcEEEEE---eCCEEEEEEccCCC
Q psy2145 651 GQSAHYDCRVVPVGDP--------TMRFEWFVN--GVELK----------M----GSRFHVQH---DFGYVTLDITKCVP 703 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P--------~p~i~W~~~--g~~l~----------~----~~~~~~~~---~~~~~~L~I~~v~~ 703 (808)
|++|+|.|.+.....+ ...|.|+|. |+.+. . .+|+.+.. +.+..+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 8999999999522211 378999984 22110 0 13444432 24568999999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
+|+|+|.|.+....+..+..+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999999888889999999876
No 256
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.46 E-value=1.9e-06 Score=73.19 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=53.2
Q ss_pred ceEEEEEEEeeCC-CCCeEEEEEECCEE---------------ccC--CCcEEEEEe-CCEEEEEEccCCCCCcEEEEEE
Q psy2145 652 QSAHYDCRVVPVG-DPTMRFEWFVNGVE---------------LKM--GSRFHVQHD-FGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 652 ~~v~l~C~v~~~g-~P~p~i~W~~~g~~---------------l~~--~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
++|+|.|.+...+ .+...|.|+|.... +.. ..|..+... .+..+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4799999994222 13558999995421 111 122222221 1457999999999999999999
Q ss_pred EEe-CCcceEEEEEEEE
Q psy2145 713 AIN-RAGEAVSSTSLKV 728 (808)
Q Consensus 713 A~N-~~G~~~~s~~l~V 728 (808)
+.+ ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 6789999998887
No 257
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.44 E-value=7e-07 Score=77.61 Aligned_cols=70 Identities=24% Similarity=0.379 Sum_probs=53.3
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECC--EEcc----------------CCCcEEEEEeC-CEEEEEEccCCCCCc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG--VELK----------------MGSRFHVQHDF-GYVTLDITKCVPADS 706 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g--~~l~----------------~~~~~~~~~~~-~~~~L~I~~v~~~D~ 706 (808)
..+.+|++|+|.|.+ .+ +.+.|.|||.. ..+. ...|+.+..+. ...+|+|.+++.+|+
T Consensus 8 ~~v~~G~~v~l~C~~--~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 8 LIKGRGQSVTLRCSQ--TS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred eEEcCCCcEEEEEEE--CC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 468899999999999 56 77899999842 1111 13466654433 567999999999999
Q ss_pred EEEEEEEEeCCc
Q psy2145 707 GVYMCKAINRAG 718 (808)
Q Consensus 707 G~Y~C~A~N~~G 718 (808)
|.|.|.+.+..|
T Consensus 85 g~Y~Ca~~~~~~ 96 (110)
T cd05899 85 AVYLCASSLGGG 96 (110)
T ss_pred EEEEEEeeCCCC
Confidence 999999987643
No 258
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.44 E-value=1.5e-06 Score=73.80 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=52.8
Q ss_pred CcEEEEEEEeeCCC-CCceEEEEeCCE----Eee-----------c--cCcEEEEee-CCeEEEEEcccCcCCCeeEEEE
Q psy2145 66 GHAHFECKLEPVTD-SNLKVEWFKNGR----PVT-----------I--GHRFRPIHD-FGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 66 ~~v~l~C~~~~~~~-p~~~v~W~~~g~----~l~-----------~--~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
++|+|.|.+..... ....|.|+|... .+. . ..|..+..+ .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 57999999985211 345799999542 110 1 122222211 1567999999999999999999
Q ss_pred EEe-cCcceEEEEEEEE
Q psy2145 127 AVN-LVGFAEVQATLQC 142 (808)
Q Consensus 127 a~n-~~g~~~~~~~l~V 142 (808)
+.+ ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 6688888888877
No 259
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.44 E-value=5.2e-07 Score=72.24 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=50.6
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCC-CeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
+|.|...+.......+. +.|.|.+. +.+ .+.++|+ +........ .........+|.|.++..+|.|.|+|.|+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~--~~~~~~~~~W~-~~~~~~~~~--~~~~~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAE--GGPPPPSISWY-DSNPSFNSN--SRGSSSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEES--SEESSEEEEEE-TEEEEEEEE--EEEEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEc--cccCCeEEEEE-ecCCceeee--eeeccceeeEEEEccCCHHhCcEEEEEEE
Confidence 46777777776665555 99999994 555 8999999 111111111 11111223379999999999999999998
Q ss_pred e
Q psy2145 262 N 262 (808)
Q Consensus 262 n 262 (808)
|
T Consensus 75 N 75 (75)
T PF13927_consen 75 N 75 (75)
T ss_dssp E
T ss_pred C
Confidence 7
No 260
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.43 E-value=8.3e-07 Score=78.06 Aligned_cols=74 Identities=24% Similarity=0.426 Sum_probs=56.0
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEe---e--------------ccCcEEEEeeC--CeEEEEEc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPV---T--------------IGHRFRPIHDF--GYVALDII 113 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l---~--------------~~~r~~~~~~~--~~~~L~I~ 113 (808)
.|..+ .+.+|++|+|.|.+.....+...+.|||. |..+ . ...|+.+..+. ..+.|.|.
T Consensus 4 ~p~~~-~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 4 PQLSI-TREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred cCCeE-EeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 35566 89999999999999742246678999993 2211 0 13577766665 67899999
Q ss_pred ccCcCCCeeEEEEEEe
Q psy2145 114 DTIPEDSGTYTCRAVN 129 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n 129 (808)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 261
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.41 E-value=1.3e-06 Score=73.71 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=54.3
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec-------------cCcE--EEEeeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-------------GHRF--RPIHDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~-------------~~r~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
..|++|+|.|.... +.....+.|+|....+.. +.+| +...+.+..+|.|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~-~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPD-GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCC-CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 47999999998863 245568999986533221 1122 1223445578999999999999999999
Q ss_pred EecCcce-EEEEEEEE
Q psy2145 128 VNLVGFA-EVQATLQC 142 (808)
Q Consensus 128 ~n~~g~~-~~~~~l~V 142 (808)
.+..|.. .....|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9876544 44455554
No 262
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.39 E-value=3.4e-06 Score=67.21 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=53.4
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCC---EEEEEEccCCCCCcEEEEEEEEeCCc-ceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG---YVTLDITKCVPADSGVYMCKAINRAG-EAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~s~~l~V~ 729 (808)
+.|.|.+. .+.|.+.|+|||+|++|...........++ .++|.|..-..+|...|+|.|.|.+= ....+..|.|.
T Consensus 2 ~~L~C~s~-gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAM-ASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEec-CCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 68999996 678999999999999997643221112122 45788876666677789999999752 24556666665
Q ss_pred e
Q psy2145 730 S 730 (808)
Q Consensus 730 ~ 730 (808)
.
T Consensus 81 y 81 (82)
T cd05883 81 Y 81 (82)
T ss_pred E
Confidence 3
No 263
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.39 E-value=1.5e-06 Score=73.21 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=55.6
Q ss_pred cCCceEEEEEEEeeCCCCCeEEEEEECCEEccC-------------CCcE--EEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-------------GSRF--HVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-------------~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
..|++|+|.|... .+.....|.|+|++..+.. +++| ++.-+.+..+|+|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~-~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIP-DGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCC-CCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 3699999999873 2255678999987532211 1122 1222344579999999999999999999
Q ss_pred EeCCcce-EEEEEEEE
Q psy2145 714 INRAGEA-VSSTSLKV 728 (808)
Q Consensus 714 ~N~~G~~-~~s~~l~V 728 (808)
.+..|.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9988765 44566665
No 264
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.38 E-value=1.8e-06 Score=74.46 Aligned_cols=74 Identities=23% Similarity=0.438 Sum_probs=54.0
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCC-CeEEEEeeCC--EE---cc---------CCCceEEEecCceEEEEEccCCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNN--VP---IK---------SGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~~g--~~---l~---------~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
...|..+.+.+|++|+|.|.+. +.. ...+.|||.. .. |. ...++..........|.|.+++.+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~ 81 (106)
T cd04980 4 TQSPATLSVSPGESATISCKAS--QSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE 81 (106)
T ss_pred EECCCcEEECCCCCEEEEEEEC--CCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence 3456678899999999999983 333 5679999832 11 11 123555544556678999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+.+
T Consensus 82 Dsg~Y~Ca~~~ 92 (106)
T cd04980 82 DAAVYYCQQYG 92 (106)
T ss_pred HCEEEEEEEeC
Confidence 99999999865
No 265
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.37 E-value=1.9e-06 Score=75.19 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=52.9
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCC---CceEEEEeC----CEE--ee---------ccCcE----EEEe--eCCeEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDS---NLKVEWFKN----GRP--VT---------IGHRF----RPIH--DFGYVA 109 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p---~~~v~W~~~----g~~--l~---------~~~r~----~~~~--~~~~~~ 109 (808)
..|..+ .+.+|++++|.|.... ..+ ...|.||+. +.+ +. ...+| .... ..+.++
T Consensus 3 ~~~~~v-~~~~G~~v~L~C~~s~-~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~s 80 (115)
T cd05880 3 YTSKEV-EAVNGTDVRLKCTFSS-SAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDAS 80 (115)
T ss_pred ecCceE-EEEcCCCEEEEEEEEe-CCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceE
Confidence 356777 8999999999999874 122 357999751 221 21 01122 2211 235578
Q ss_pred EEEcccCcCCCeeEEEEEEecCcc
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
|.|.+++.+|+|.|.|.+.|..+.
T Consensus 81 L~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 81 ILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred EEEeeCChhhCEEEEEEEEeCCCC
Confidence 999999999999999999987553
No 266
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.37 E-value=2.3e-06 Score=69.55 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=45.5
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG----YVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
+.|.|.+. .+.|.+.|.|++||++|..........+++ .+.|.+.....+|.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~-~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSS-GSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEec-CcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 68999995 466999999999999997443111111222 2356665555566779999999997643
No 267
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.36 E-value=2.2e-06 Score=74.80 Aligned_cols=73 Identities=23% Similarity=0.402 Sum_probs=49.8
Q ss_pred ccccCCceEEEEEEEeeCCCC---CeEEEEEE----CCEE--cc---------CCCcE----EEEE--eCCEEEEEEccC
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDP---TMRFEWFV----NGVE--LK---------MGSRF----HVQH--DFGYVTLDITKC 701 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P---~p~i~W~~----~g~~--l~---------~~~~~----~~~~--~~~~~~L~I~~v 701 (808)
+.+.+|++++|.|.+.. ..+ .+.|.|++ ++.+ +. ...+| .+.. ..+..+|.|.++
T Consensus 8 v~~~~G~~v~L~C~~s~-~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v 86 (115)
T cd05880 8 VEAVNGTDVRLKCTFSS-SAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL 86 (115)
T ss_pred EEEEcCCCEEEEEEEEe-CCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence 56889999999999852 222 45799985 1221 10 11222 2221 234578999999
Q ss_pred CCCCcEEEEEEEEeCCcc
Q psy2145 702 VPADSGVYMCKAINRAGE 719 (808)
Q Consensus 702 ~~~D~G~Y~C~A~N~~G~ 719 (808)
+.+|+|.|.|.+.|..+.
T Consensus 87 ~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 87 QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ChhhCEEEEEEEEeCCCC
Confidence 999999999999998764
No 268
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.35 E-value=1.9e-06 Score=75.64 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=53.6
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCC--CCceEEEEeCC------EEee----------cc----CcEEEEe--eCCeEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTD--SNLKVEWFKNG------RPVT----------IG----HRFRPIH--DFGYVA 109 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~--p~~~v~W~~~g------~~l~----------~~----~r~~~~~--~~~~~~ 109 (808)
..|..+ .+.+|++|+|.|.+..... ....+.|++.. ..+. .. .|+.+.. ..+.++
T Consensus 3 ~~p~~v-~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 81 (116)
T cd05715 3 YTPREV-YAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDAS 81 (116)
T ss_pred ecCCeE-EEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeE
Confidence 457777 8999999999999974211 23579998621 1111 11 1222222 134578
Q ss_pred EEEcccCcCCCeeEEEEEEecCcc
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
|.|.+++.+|+|.|.|.+.|....
T Consensus 82 L~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 82 IVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EEEeeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999999987553
No 269
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.34 E-value=1.4e-06 Score=72.89 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=50.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
+..+... .|.+|++|+|.|... .+...+.|||+|.....-.............|.|.+++.+|+|.|+|...
T Consensus 4 l~a~p~~-vV~~G~~VTL~C~~~---~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 4 LSAHPSP-VVPSGENVTLQCHSD---IRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEecCCC-ccCCCCeEEEEEecC---CCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4445555 789999999999876 25568999998865321100000112234479999999999999999975
No 270
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.34 E-value=2e-06 Score=72.09 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=51.4
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccC------------------CCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKM------------------GSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~------------------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
|++|+|.|.+ ...+...|.|+|+...... ..|+.+..+ .+|.|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~--~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSN--LPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEccc--CCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEE
Confidence 7899999998 5577789999997532210 123333322 5899999999999999999
Q ss_pred EEeCCcce-EEEEEEE
Q psy2145 713 AINRAGEA-VSSTSLK 727 (808)
Q Consensus 713 A~N~~G~~-~~s~~l~ 727 (808)
+.+..|.. ...+.|.
T Consensus 76 v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 76 IISTNGVTENAKFFLR 91 (92)
T ss_pred EEcCCCcEEEEEEEEE
Confidence 99887543 3344444
No 271
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.33 E-value=7.1e-06 Score=70.24 Aligned_cols=79 Identities=22% Similarity=0.437 Sum_probs=56.7
Q ss_pred CCcEEEEEEEeeC---------CCCCceEEEEeC-----CE-----Ee--ecc----------CcEEEEee---CCeEEE
Q psy2145 65 RGHAHFECKLEPV---------TDSNLKVEWFKN-----GR-----PV--TIG----------HRFRPIHD---FGYVAL 110 (808)
Q Consensus 65 G~~v~l~C~~~~~---------~~p~~~v~W~~~-----g~-----~l--~~~----------~r~~~~~~---~~~~~L 110 (808)
|++++|.|.+.-. ....+.|+|++- |. .+ ..+ .|..+..+ .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 7899999999831 112459999873 11 11 111 24444322 366899
Q ss_pred EEcccCcCCCeeEEEEEEecCcceEEEEEEEEe
Q psy2145 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143 (808)
Q Consensus 111 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 143 (808)
.|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999987777888888875
No 272
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.32 E-value=2.5e-06 Score=72.31 Aligned_cols=68 Identities=16% Similarity=0.352 Sum_probs=52.5
Q ss_pred cccCCceEEEEEEEeeCCC--CCeEEEEEEC--CEEc------------cCCCcEEEEEeCCEEEEEEccCCCCCcEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGD--PTMRFEWFVN--GVEL------------KMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~--P~p~i~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 710 (808)
.+.+|++|+|.|.+ .+. ....+.||+. |..+ ...+|+.+..+.+..+|+|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~--~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTG--SSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEE--cCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEE
Confidence 46789999999998 454 5678999973 2111 1134787777778889999999999999999
Q ss_pred EEEEeC
Q psy2145 711 CKAINR 716 (808)
Q Consensus 711 C~A~N~ 716 (808)
|.+.|.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 998764
No 273
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.32 E-value=2.1e-06 Score=71.97 Aligned_cols=63 Identities=22% Similarity=0.292 Sum_probs=46.4
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCEEeec------------------cCcEEEEeeCCeEEEEEcccCcCCCeeEEEE
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTI------------------GHRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~------------------~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
|++|+|.|.+.+ .+...|.|+|+...... ..|+.+..+ .+|.|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~~--~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNLP--ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccCC--CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEE
Confidence 899999999884 56669999996533210 123333222 5899999999999999999
Q ss_pred EEecCc
Q psy2145 127 AVNLVG 132 (808)
Q Consensus 127 a~n~~g 132 (808)
+....|
T Consensus 76 v~~~~~ 81 (92)
T cd05741 76 IISTNG 81 (92)
T ss_pred EEcCCC
Confidence 987653
No 274
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.32 E-value=1.9e-06 Score=75.68 Aligned_cols=69 Identities=26% Similarity=0.443 Sum_probs=54.2
Q ss_pred ccccCCceEEEEEEEeeCC--CCCeEEEEEEC--CEEc-----------------cCCCcEEEEEeC--CEEEEEEccCC
Q psy2145 646 SEIMEGQSAHYDCRVVPVG--DPTMRFEWFVN--GVEL-----------------KMGSRFHVQHDF--GYVTLDITKCV 702 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g--~P~p~i~W~~~--g~~l-----------------~~~~~~~~~~~~--~~~~L~I~~v~ 702 (808)
..+.+|++|+|.|.+ .+ .+.+.+.|||. |..+ ....|+.+..+. ...+|+|.+++
T Consensus 8 ~~~~~G~~v~l~C~~--~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~ 85 (116)
T cd04982 8 ITREESKSVTISCKV--SGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE 85 (116)
T ss_pred EEeCCCCCEEEEEEE--eCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence 457889999999999 45 68889999984 2211 024677777665 67899999999
Q ss_pred CCCcEEEEEEEEeC
Q psy2145 703 PADSGVYMCKAINR 716 (808)
Q Consensus 703 ~~D~G~Y~C~A~N~ 716 (808)
.+|+|.|.|.+.+.
T Consensus 86 ~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 86 KEDSATYYCAYWES 99 (116)
T ss_pred HHHCEEEEEEEecC
Confidence 99999999998643
No 275
>KOG0613|consensus
Probab=98.31 E-value=1.1e-06 Score=101.39 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=134.0
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccC---CCCe
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTT---QAPI 185 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~P~ 185 (808)
++.|.+...++.+.|+|...+..+.....+...+..... .|.... +..... ..|.
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~---------------------~~~p~~-~~~aaa~~~~~~v 336 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKG---------------------KPGPES-LQAAAARPPEVPV 336 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeecccc---------------------ccCchh-hhhhccCCccccc
Confidence 456666666667777777776666655554444321111 000000 000111 2333
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeE-EEEeeCCEEccCCC--ceEEEecCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMK-VEWFHNNVPIKSGS--RFTETNNFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~-v~W~~~g~~l~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
+......+.+..+..+.+.|.. .+.+.+. +.||+++.....+. .+..........+.|..+...+.+.|.|.|.|
T Consensus 337 ~~~~~~~v~a~d~~~v~m~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n 414 (1205)
T KOG0613|consen 337 GLVRNLSVTARDNTLVEMPTAL--SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVN 414 (1205)
T ss_pred cccccceeccccCcceeecccc--cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceec
Confidence 3344445667788889999998 5666665 99999877655443 22222333344788999999999999999999
Q ss_pred CceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecC--CeEEEEEEEe
Q psy2145 263 ALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAEN--QAAHFEARLI 340 (808)
Q Consensus 263 ~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G--~~~~l~C~~~ 340 (808)
..|........+|.... ....|.+...........+ +.+.+.|.+
T Consensus 415 ~~g~~~~~~~~~vs~~~--------------------------------~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~- 461 (1205)
T KOG0613|consen 415 KGGTEQTIAESTVSEEM--------------------------------PGTQPPKFKKDVSTTDLLTVKDEITVRTPD- 461 (1205)
T ss_pred cCCcccccchhhccccc--------------------------------CCCCCccccccccccccccCCcccccccCC-
Confidence 98877766555554321 1112222222222222233 778888887
Q ss_pred ecCCC--ccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2145 341 PVGDS--KLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397 (808)
Q Consensus 341 ~~g~p--~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g 397 (808)
.+.+ ...++|++++-+. ..+..........+|.+.-....|.|.|.-......|
T Consensus 462 -~s~~~~~~~~tt~~~~~~~--s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 462 -SSTSMPMTTVTTIKDGLPL--SDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQG 517 (1205)
T ss_pred -CCccccceeEeeccCCccc--ccccccccccchhhheeeccCCCccchhhhhhhccCC
Confidence 5666 4455666655443 3333333444556788888889999999665544333
No 276
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.30 E-value=6.8e-06 Score=65.53 Aligned_cols=76 Identities=16% Similarity=0.331 Sum_probs=54.2
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC---cEEEEEECCCCCCCCEEEEEEEEeCCe-eEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF---GYVAMDLSHVRAEDEGIYICKATNALG-EAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~s~~l~V~ 597 (808)
+.|+|.+. .+.|.+.|+|||+|+++...........+ ...+|.|..-..+|...|+|.|.|+.- ....+..|.|.
T Consensus 2 ~~L~C~s~-gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAM-ASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEec-CCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 68999986 78999999999999999764322111212 234688877777788899999999642 24555666665
Q ss_pred e
Q psy2145 598 T 598 (808)
Q Consensus 598 ~ 598 (808)
.
T Consensus 81 y 81 (82)
T cd05883 81 Y 81 (82)
T ss_pred E
Confidence 3
No 277
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.30 E-value=3.1e-06 Score=71.76 Aligned_cols=69 Identities=20% Similarity=0.346 Sum_probs=51.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCC---EE--ee---------ccCcEEEEeeCCeEEEEEcccCcCCCeeEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNG---RP--VT---------IGHRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g---~~--l~---------~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
.|.+|++|+|.|.+.........+.|||.. .+ |. ...|+....+.+...|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 688999999999987411145679999822 11 11 12477776677778999999999999999999
Q ss_pred EEe
Q psy2145 127 AVN 129 (808)
Q Consensus 127 a~n 129 (808)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 875
No 278
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.27 E-value=3.6e-06 Score=73.89 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=55.0
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEE---ee---------ccCcEEEEe--eCCeEEEEEcccCc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRP---VT---------IGHRFRPIH--DFGYVALDIIDTIP 117 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~---l~---------~~~r~~~~~--~~~~~~L~I~~~~~ 117 (808)
..|..+ .+.+|++|+|.|.+.. ......+.|||. +.. |. ...|+.+.. ..+.++|.|.+++.
T Consensus 4 q~~~~v-~~~~G~~v~L~C~~~~-~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 4 QAQPDV-SVQVGEEVTLNCRYET-SWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred EeCCce-EEcCCCCEEEEEEEeC-CCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 456666 8999999999999874 224568999982 221 11 135677653 34568999999999
Q ss_pred CCCeeEEEEEEe
Q psy2145 118 EDSGTYTCRAVN 129 (808)
Q Consensus 118 ~D~G~Y~C~a~n 129 (808)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999985
No 279
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.26 E-value=1.1e-05 Score=69.03 Aligned_cols=80 Identities=25% Similarity=0.455 Sum_probs=58.1
Q ss_pred CceEEEEEEEeeC---------CCCCeEEEEEEC-----CEE-----c--cCC----------CcEEEEEe---CCEEEE
Q psy2145 651 GQSAHYDCRVVPV---------GDPTMRFEWFVN-----GVE-----L--KMG----------SRFHVQHD---FGYVTL 696 (808)
Q Consensus 651 G~~v~l~C~v~~~---------g~P~p~i~W~~~-----g~~-----l--~~~----------~~~~~~~~---~~~~~L 696 (808)
|++++|.|.+.-. ....+.|.|++- |+. + ..+ +|..+..+ .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 6789999999511 112458999873 221 1 111 23444322 256899
Q ss_pred EEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 697 DITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 697 ~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
.|.+++..|+|.|+|.+.+.......++.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999999999999999975
No 280
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.26 E-value=4.4e-06 Score=69.53 Aligned_cols=71 Identities=7% Similarity=0.077 Sum_probs=51.1
Q ss_pred ccCCCCcEEEEEEEeeCCCCCce--EEEEeCCEEeeccCcEEE---EeeCCeEEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLK--VEWFKNGRPVTIGHRFRP---IHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~--v~W~~~g~~l~~~~r~~~---~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
.+.+|+.++|+|.+.+ +.|... |.|||+++.|... .+.. .......+|.+.....+|.-.|+|+|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g-~~P~a~L~i~W~rG~~~l~~~-~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPG-VAPRQNLTVVLLRGNETLSRQ-PFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcC-cCCCCcEEEEEeeCCEEcccc-eeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 5789999999999997 678776 7999999998643 2211 11223457887655555555899999987654
No 281
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.25 E-value=5.8e-06 Score=67.23 Aligned_cols=65 Identities=15% Similarity=0.350 Sum_probs=46.0
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCc----EEEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG----YVAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
+.|+|.+. .+.|.+.|+|+++|++|...........++ ...|.+.....+|.+.|+|.|.|....
T Consensus 2 ~~L~C~~~-~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSS-GSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEec-CcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999995 566999999999999986443211112222 224667666677788999999998654
No 282
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.25 E-value=9.6e-06 Score=69.43 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=55.8
Q ss_pred CCcEEEEEEEeeCCC-----CCceEEEEeC-----CEEee----c----------cCcEEEEee---CCeEEEEEcccCc
Q psy2145 65 RGHAHFECKLEPVTD-----SNLKVEWFKN-----GRPVT----I----------GHRFRPIHD---FGYVALDIIDTIP 117 (808)
Q Consensus 65 G~~v~l~C~~~~~~~-----p~~~v~W~~~-----g~~l~----~----------~~r~~~~~~---~~~~~L~I~~~~~ 117 (808)
|++|+|.|.+..... ..+.|.|+|. ...+. . ..|..+..+ .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 789999999762111 2479999984 11111 1 134444332 3678999999999
Q ss_pred CCCeeEEEEEEecCcceEEEEEEEEe
Q psy2145 118 EDSGTYTCRAVNLVGFAEVQATLQCR 143 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g~~~~~~~l~V~ 143 (808)
+|+|.|+|.+.......+..+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999876667778888875
No 283
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.25 E-value=8.5e-06 Score=66.23 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=46.7
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeC-C----EEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF-G----YVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
+.|.|.+. .+.|.+.|+|++||++|...........+ + .++|.|.....+|...|+|.|.+.....
T Consensus 2 ~~LtC~a~-g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSS-GSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEec-CccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 68999994 45699999999999998764332222222 2 2456665666677789999999987543
No 284
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.24 E-value=1.1e-05 Score=68.35 Aligned_cols=76 Identities=24% Similarity=0.418 Sum_probs=53.1
Q ss_pred eEEEEEEEeeCCCC-CeEEEEEEC--CE---Ec---cC----------CCcEEEEE--eCCEEEEEEccCCCCCcEEEEE
Q psy2145 653 SAHYDCRVVPVGDP-TMRFEWFVN--GV---EL---KM----------GSRFHVQH--DFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 653 ~v~l~C~v~~~g~P-~p~i~W~~~--g~---~l---~~----------~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
+|+|.|.......+ ...|.|+|. |. .+ .. .+|..+.. ..+..+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 68999999522212 458999983 31 11 10 13444443 2345689999999999999999
Q ss_pred EEEe-CCcceEEEEEEEE
Q psy2145 712 KAIN-RAGEAVSSTSLKV 728 (808)
Q Consensus 712 ~A~N-~~G~~~~s~~l~V 728 (808)
.+.| ..|..+..+.|+|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9999 7788777888877
No 285
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.22 E-value=1.1e-05 Score=70.55 Aligned_cols=83 Identities=22% Similarity=0.395 Sum_probs=59.8
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCE-----Ecc--------------CCCcEEEEEe--CCEEEEEEccCCC
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV-----ELK--------------MGSRFHVQHD--FGYVTLDITKCVP 703 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~-----~l~--------------~~~~~~~~~~--~~~~~L~I~~v~~ 703 (808)
...+.+|+++.|.|... .......+.|++... .+. ..+++.+..+ .+..+|.|.+++.
T Consensus 10 ~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp EEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred eEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 45688999999999994 256778999998321 111 0234555544 3478999999999
Q ss_pred CCcEEEEEEEEeC-CcceEEEEEEEE
Q psy2145 704 ADSGVYMCKAINR-AGEAVSSTSLKV 728 (808)
Q Consensus 704 ~D~G~Y~C~A~N~-~G~~~~s~~l~V 728 (808)
+|+|.|.|.+... .+.....+.|+|
T Consensus 89 ~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 89 SDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999887 444455566655
No 286
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.20 E-value=1.2e-05 Score=68.19 Aligned_cols=77 Identities=22% Similarity=0.434 Sum_probs=52.9
Q ss_pred CcEEEEEEEeeCCCC-CceEEEEeC--CE---Eee--c-----------cCcEEEEe--eCCeEEEEEcccCcCCCeeEE
Q psy2145 66 GHAHFECKLEPVTDS-NLKVEWFKN--GR---PVT--I-----------GHRFRPIH--DFGYVALDIIDTIPEDSGTYT 124 (808)
Q Consensus 66 ~~v~l~C~~~~~~~p-~~~v~W~~~--g~---~l~--~-----------~~r~~~~~--~~~~~~L~I~~~~~~D~G~Y~ 124 (808)
.+|+|.|.......+ ...|.|+|. +. .+. . .+|.+... ..+..+|.|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 368999999742112 348999993 21 111 0 13444432 234568999999999999999
Q ss_pred EEEEe-cCcceEEEEEEEE
Q psy2145 125 CRAVN-LVGFAEVQATLQC 142 (808)
Q Consensus 125 C~a~n-~~g~~~~~~~l~V 142 (808)
|.+.+ ..|..+..+.|+|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99997 6777777777776
No 287
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.20 E-value=6e-06 Score=69.05 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=49.7
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
|.+...+. ..|.+|++|+|.|.. . .+.-.+.|||+|.....-...........+.+.|..++.+|+|.|.|...
T Consensus 2 P~l~a~p~--~vV~~G~~VTL~C~~--~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHPS--PVVPSGENVTLQCHS--D-IRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecCC--CccCCCCeEEEEEec--C-CCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 44444432 368899999999987 2 35568999999875331100000011224589999999999999999964
No 288
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.19 E-value=9.5e-06 Score=74.03 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=62.1
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee----------c--cCcEE-EEeeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT----------I--GHRFR-PIHDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~----------~--~~r~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
+|.+|++|+|.|.... +...+.|+|+|..+.+. . .+|+. +.......+|.|.+++.+|+|.|.|..
T Consensus 26 ~V~ege~VtLsCs~t~-s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 26 TVSEHVNVKISCNKTS-SFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEcCCCCEEEEEecCC-CCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 8899999999999852 34567899999643332 1 13554 333445568999999999999999998
Q ss_pred Ee-cCc-ceEEEEEEEEecC
Q psy2145 128 VN-LVG-FAEVQATLQCRGS 145 (808)
Q Consensus 128 ~n-~~g-~~~~~~~l~V~~~ 145 (808)
.- ..| ..+..+.|+|...
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EecCCCCCceeEEEEEEEch
Confidence 63 346 7788888888754
No 289
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.19 E-value=7.2e-06 Score=69.26 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=52.6
Q ss_pred CCeEEEEEEEeecCCCCeEEEEeeCCE----Ecc-----C--------CCceEE-EecCceEEEEEccCCCCCcEEEEEE
Q psy2145 198 GQRAHFECRLIPVSDNTMKVEWFHNNV----PIK-----S--------GSRFTE-TNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~~~v~W~~~g~----~l~-----~--------~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
|++|+|.|... .......|.|+|... .+. . ..+... ..+.+.++|.|.+++.+|+|.|.|.
T Consensus 1 G~~vtL~C~~~-~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLT-LPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeC-CCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEE
Confidence 78999999974 222234799998421 110 0 111111 1223556899999999999999999
Q ss_pred EEe-CceeEEEEEEEEE
Q psy2145 260 AVN-ALGQAVTSGNLLV 275 (808)
Q Consensus 260 a~n-~~g~~~~~~~l~V 275 (808)
+.. +.|.....+.|+|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 875 7788777888877
No 290
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.19 E-value=8.7e-06 Score=71.39 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=50.6
Q ss_pred ecCceeecCCCeEEEEEEEeecCC--CCeEEEEeeCCE------Ec---------c-CCCce----EEEe--cCceEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSD--NTMKVEWFHNNV------PI---------K-SGSRF----TETN--NFGFVALD 244 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~--p~~~v~W~~~g~------~l---------~-~~~~~----~~~~--~~~~~~L~ 244 (808)
.|..+.+.+|++|+|.|.+..... ....+.|++... .+ . ...++ .... ..+.++|.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 355678889999999999852111 236799987221 11 0 11122 1211 12456899
Q ss_pred EccCCCCCcEEEEEEEEeCce
Q psy2145 245 IMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 245 I~~~~~~D~G~Y~C~a~n~~g 265 (808)
|.+++.+|+|.|.|.+.|..+
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999998544
No 291
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.19 E-value=8.6e-06 Score=67.82 Aligned_cols=71 Identities=18% Similarity=0.129 Sum_probs=50.7
Q ss_pred ccccCCceEEEEEEEeeCCCCCeE--EEEEECCEEccCCCcEEE---EEeCCEEEEEEccCCCCCcE-EEEEEEEeCCcc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMR--FEWFVNGVELKMGSRFHV---QHDFGYVTLDITKCVPADSG-VYMCKAINRAGE 719 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~--i~W~~~g~~l~~~~~~~~---~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~G~ 719 (808)
..+.+|+.++|.|.+. .|.|.+. |.|||+++.|... .+.. ......++|++. +..+|.| .|+|.|.|.++.
T Consensus 11 ~~~~eG~~~tL~C~v~-g~~P~a~L~i~W~rG~~~l~~~-~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVP-GVAPRQNLTVVLLRGNETLSRQ-PFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEc-CcCCCCcEEEEEeeCCEEcccc-eeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 3578999999999995 5688876 7999999999643 2211 111234577775 4455655 799999998764
No 292
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.18 E-value=5.2e-06 Score=70.03 Aligned_cols=71 Identities=24% Similarity=0.335 Sum_probs=50.9
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc-EEE--EeeCCe---EEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR-FRP--IHDFGY---VALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r-~~~--~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
..|+.++|.|.+.++..+.+.|+|++||..+..+.. ... ..++.. ..|.|.....+|.|.|+|+|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 479999999999974233579999999999876543 222 122222 24677777677999999999987543
No 293
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.18 E-value=1.5e-05 Score=66.93 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=52.4
Q ss_pred eEEEEEEEeeCCCCC---eEEEEEEC--CE--Ec--cC-----------CCcEEEEE-eCCEEEEEEccCCCCCcEEEEE
Q psy2145 653 SAHYDCRVVPVGDPT---MRFEWFVN--GV--EL--KM-----------GSRFHVQH-DFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 653 ~v~l~C~v~~~g~P~---p~i~W~~~--g~--~l--~~-----------~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
.|+|.|... ...|. .+|+|.+. |. .+ .. .+|..+.. ..+..+|.|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~f~-~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFI-NPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEee-cCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 689999995 22332 27999983 21 11 11 12333321 2234689999999999999999
Q ss_pred EEEe-CCcceEEEEEEEE
Q psy2145 712 KAIN-RAGEAVSSTSLKV 728 (808)
Q Consensus 712 ~A~N-~~G~~~~s~~l~V 728 (808)
.+.| ..|..+..+.|+|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 9999 7899888999987
No 294
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.17 E-value=2.4e-05 Score=68.46 Aligned_cols=88 Identities=26% Similarity=0.396 Sum_probs=59.6
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCE-----Ecc--------------CCCceEEEec--CceEEEEE
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV-----PIK--------------SGSRFTETNN--FGFVALDI 245 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~-----~l~--------------~~~~~~~~~~--~~~~~L~I 245 (808)
...+..+.+.+|++|.|.|... .......+.|++... .+. ...++....+ .+.++|.|
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEeCCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 3346778899999999999994 245667999999321 111 0122232222 34678999
Q ss_pred ccCCCCCcEEEEEEEEeC-ceeEEEEEEEEE
Q psy2145 246 MQCLPEDSGVYTCRAVNA-LGQAVTSGNLLV 275 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~-~g~~~~~~~l~V 275 (808)
.+++.+|+|.|.|.+... .+.......|.|
T Consensus 84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999999886 233334455554
No 295
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.17 E-value=1.5e-05 Score=64.78 Aligned_cols=65 Identities=14% Similarity=0.306 Sum_probs=46.9
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe-eCcE----EEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-DFGY----VAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~-~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
+.|+|.+. .+.|.+.|+|++||+.|.......... +++. ..|.|.....+|...|+|.|.|....
T Consensus 2 ~~LtC~a~-g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSS-GSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEec-CccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 68999995 556999999999999987644322222 2222 35777677777889999999998643
No 296
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.16 E-value=4e-06 Score=70.73 Aligned_cols=69 Identities=23% Similarity=0.386 Sum_probs=50.6
Q ss_pred cCCceEEEEEEEeeCCC-C-CeEEEEEECCEEccCCCc-EEE--EEeCCE---EEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 649 MEGQSAHYDCRVVPVGD-P-TMRFEWFVNGVELKMGSR-FHV--QHDFGY---VTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g~-P-~p~i~W~~~g~~l~~~~~-~~~--~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
..|+.+.|.|.+ .|. | .+.|+|++||..+..... ... ..++.+ +.|.|......|.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a--~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLA--TGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEE--eeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468999999999 676 6 479999999999976653 222 222232 35666666666999999999998664
No 297
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.16 E-value=7.9e-06 Score=69.02 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=53.4
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCE----Eee-----c--------cCcEEE-EeeCCeEEEEEcccCcCCCeeEEEE
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGR----PVT-----I--------GHRFRP-IHDFGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~----~l~-----~--------~~r~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
|++|+|.|.... ......|.|+|... .|. . ..|+.. ..+.+.++|.|.+++.+|+|.|.|.
T Consensus 1 G~~vtL~C~~~~-~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTL-PEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCC-CCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEE
Confidence 789999999873 22234799998431 211 0 112222 1233567899999999999999999
Q ss_pred EE-ecCcceEEEEEEEE
Q psy2145 127 AV-NLVGFAEVQATLQC 142 (808)
Q Consensus 127 a~-n~~g~~~~~~~l~V 142 (808)
+. ...|.....+.|+|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 87 45677788888877
No 298
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.15 E-value=2e-05 Score=67.51 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=57.7
Q ss_pred CceEEEEEEEeeC----CC-CCeEEEEEEC-----CEE----ccCC----------CcEEEEEe---CCEEEEEEccCCC
Q psy2145 651 GQSAHYDCRVVPV----GD-PTMRFEWFVN-----GVE----LKMG----------SRFHVQHD---FGYVTLDITKCVP 703 (808)
Q Consensus 651 G~~v~l~C~v~~~----g~-P~p~i~W~~~-----g~~----l~~~----------~~~~~~~~---~~~~~L~I~~v~~ 703 (808)
|++|.|.|.+... +. ..+.|.|+|- ... +..+ +|..+..+ .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 7899999997411 11 2579999974 111 1111 24444332 2578999999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
+|+|.|.|.........+..+.|+|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999888888899999875
No 299
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.15 E-value=7.2e-06 Score=69.53 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=51.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCE-----Ee--------eccCcEEEEee--CCeEEEEEcccCcCCCeeEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGR-----PV--------TIGHRFRPIHD--FGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~-----~l--------~~~~r~~~~~~--~~~~~L~I~~~~~~D~G~Y~C 125 (808)
.+.+|++|+|.|.... ......+.|||... .| ....|+.+..+ .+.++|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~-~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPP-KNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCC-CCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 6789999999999874 24566899998431 11 11346665432 567899999999999999999
Q ss_pred EEEec
Q psy2145 126 RAVNL 130 (808)
Q Consensus 126 ~a~n~ 130 (808)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98764
No 300
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.14 E-value=2.8e-05 Score=65.31 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=53.0
Q ss_pred cEEEEEEEeeCCCC---CceEEEEeCC----EEee--c-----------cCcEEEEe-eCCeEEEEEcccCcCCCeeEEE
Q psy2145 67 HAHFECKLEPVTDS---NLKVEWFKNG----RPVT--I-----------GHRFRPIH-DFGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 67 ~v~l~C~~~~~~~p---~~~v~W~~~g----~~l~--~-----------~~r~~~~~-~~~~~~L~I~~~~~~D~G~Y~C 125 (808)
.|+|.|.... ..| ...|+|.+.. ..+. . ..|..... +.+..+|.|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~f~~-~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFIN-PLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeec-CCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 6899999983 222 2269998831 1221 1 12333321 2345689999999999999999
Q ss_pred EEEe-cCcceEEEEEEEEe
Q psy2145 126 RAVN-LVGFAEVQATLQCR 143 (808)
Q Consensus 126 ~a~n-~~g~~~~~~~l~V~ 143 (808)
.+.+ ..|..+..+.|+|.
T Consensus 81 ~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 81 EFATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEEeCCCCCeEEEEEEEEC
Confidence 9999 68888888888873
No 301
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.13 E-value=2e-05 Score=65.49 Aligned_cols=76 Identities=22% Similarity=0.392 Sum_probs=53.3
Q ss_pred CeEEEEEEEeecCCCCeEEEEeeCC----EEcc-----C--------CCceEEE-ecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 199 QRAHFECRLIPVSDNTMKVEWFHNN----VPIK-----S--------GSRFTET-NNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 199 ~~v~L~C~~~~~~~p~~~v~W~~~g----~~l~-----~--------~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
++|+|.|... ......+|+|.|.. ..+. . ..|.... ...+..+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~-~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQ-VNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEec-CCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence 4689999985 23345689998832 1221 0 1133332 1234558999999999999999998
Q ss_pred Ee-CceeEEEEEEEEE
Q psy2145 261 VN-ALGQAVTSGNLLV 275 (808)
Q Consensus 261 ~n-~~g~~~~~~~l~V 275 (808)
.+ +.|+...++.|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 66 8899999998887
No 302
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.10 E-value=2.8e-05 Score=61.71 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=53.1
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
.+..|++++|+|...+.+.|.+.|+|+--|..... ....+..+|.+..+...|+|+++|+++=..-.....+.|
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 57789999999998544566679999964432211 001223489999999999999999996443344455555
Q ss_pred EEE
Q psy2145 727 KVK 729 (808)
Q Consensus 727 ~V~ 729 (808)
.|.
T Consensus 84 ~Vl 86 (88)
T cd07694 84 KVL 86 (88)
T ss_pred EEE
Confidence 554
No 303
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.09 E-value=2.8e-05 Score=61.74 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=54.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 140 (808)
.+..|++++|+|...+...|.+.|+|+..+.... .... .+..+|.+..+...|+|.++|.+.-..-..+....|
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~~-~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QILN-QDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----eecc-CCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 6789999999999975345667999997554322 1111 122379999999999999999997553444455555
Q ss_pred EEe
Q psy2145 141 QCR 143 (808)
Q Consensus 141 ~V~ 143 (808)
.|.
T Consensus 84 ~Vl 86 (88)
T cd07694 84 KVL 86 (88)
T ss_pred EEE
Confidence 553
No 304
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.09 E-value=2.1e-05 Score=71.85 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=62.9
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEcc----------C--CCceE-EEecCceEEEEEccCCCCCcEEEE
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK----------S--GSRFT-ETNNFGFVALDIMQCLPEDSGVYT 257 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~----------~--~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~ 257 (808)
..++|.+|++|+|.|... .+...++|.|+|....+. + .+|+. +.......+|.|.+++.+|+|.|+
T Consensus 23 ~~v~V~ege~VtLsCs~t-~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKT-SSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecC-CCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence 356789999999999983 255678899999643221 1 12333 222334458999999999999999
Q ss_pred EEEEe-Cce-eEEEEEEEEEeeC
Q psy2145 258 CRAVN-ALG-QAVTSGNLLVHSK 278 (808)
Q Consensus 258 C~a~n-~~g-~~~~~~~l~V~~~ 278 (808)
|...- +.| ..+..+-|+|...
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEch
Confidence 99865 567 7778888998763
No 305
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.08 E-value=2.5e-05 Score=64.84 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=54.4
Q ss_pred CcEEEEEEEeeCCCCCceEEEEeCC----EEeec-----c--------CcEEEE-eeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 66 GHAHFECKLEPVTDSNLKVEWFKNG----RPVTI-----G--------HRFRPI-HDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 66 ~~v~l~C~~~~~~~p~~~v~W~~~g----~~l~~-----~--------~r~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
++++|.|.... ......|+|.|.. ..+.. + +|.... .+.+..+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQV-NETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecC-CCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence 46899999974 3455689998832 22221 1 244432 2334568999999999999999998
Q ss_pred E-ecCcceEEEEEEEE
Q psy2145 128 V-NLVGFAEVQATLQC 142 (808)
Q Consensus 128 ~-n~~g~~~~~~~l~V 142 (808)
. ...|..+.++.|+|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 6 56888899988887
No 306
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.08 E-value=2.1e-05 Score=68.98 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=54.5
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEe--cCceEEEEEccCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETN--NFGFVALDIMQCLP 250 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~--~~~~~~L~I~~~~~ 250 (808)
...+..+.+.+|++|+|.|.+.. ......+.|||. +.. + ....|+.+.. ..+..+|.|.+++.
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~-~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYET-SWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeC-CCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 34566788999999999999842 235678999982 221 1 1134566542 34567899999999
Q ss_pred CCcEEEEEEEEe
Q psy2145 251 EDSGVYTCRAVN 262 (808)
Q Consensus 251 ~D~G~Y~C~a~n 262 (808)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999985
No 307
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.07 E-value=1.3e-05 Score=70.62 Aligned_cols=77 Identities=29% Similarity=0.394 Sum_probs=54.3
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCC----CCCceEEEEeCC------EEee-----------ccCcEEEE--eeCCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVT----DSNLKVEWFKNG------RPVT-----------IGHRFRPI--HDFGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~----~p~~~v~W~~~g------~~l~-----------~~~r~~~~--~~~~~~~ 109 (808)
+..|+.+ .+.+|+.|+|.|...... .....+.|||.. ..+. ...|+... ...+.++
T Consensus 3 vq~P~~v-~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~s 81 (119)
T cd05712 3 LWMPKSV-SVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCS 81 (119)
T ss_pred ccCCCEE-EEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEE
Confidence 4567888 899999999999886311 113569999842 1111 01355553 2456689
Q ss_pred EEEcccCcCCCeeEEEEEEec
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
|.|.+++.+|+|.|.|++...
T Consensus 82 L~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 82 LLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEccCChhhCeEEEEEEEcC
Confidence 999999999999999998764
No 308
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.06 E-value=2.2e-05 Score=63.65 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=45.6
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-eCC----EEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-DFG----YVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+.|.|.+. .+.|...|+|+|||+.+.......... .++ .++|.|..-..+|...|+|.|.|..-.
T Consensus 2 ~~LtC~a~-gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTS-GSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeC-CccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 68999995 468889999999999987543322222 111 346777655556677899999988543
No 309
>KOG0613|consensus
Probab=98.03 E-value=3.2e-05 Score=89.73 Aligned_cols=279 Identities=12% Similarity=0.031 Sum_probs=167.5
Q ss_pred CCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEE
Q psy2145 322 MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401 (808)
Q Consensus 322 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~ 401 (808)
+......+++...|.|.+ .+.+.+.+.|+.++...... +- +..++.|.+-...+.+.|+|...+..|....
T Consensus 236 ~~~s~t~e~s~~~i~~~l--~~~~G~~~~~~~~~l~e~~~------~~-~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~ 306 (1205)
T KOG0613|consen 236 PSMSVTLEASDRKIQLTL--RAPRGPYSAHILGYLIEQRK------HK-GGNTKTIQNDGPEPELSWTVADKRQGCQDRF 306 (1205)
T ss_pred cccccccchhheeeeEEe--ecCCCchHHHHhcchhhhcc------cC-CCccccccccCCccccceeeecccCCcccce
Confidence 344456778888999988 67777788888776544333 11 2236778888888999999999888777655
Q ss_pred EEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhh
Q psy2145 402 SSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKI 481 (808)
Q Consensus 402 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (808)
.+...+....... .+..... ....+|
T Consensus 307 ~v~~~~~i~~~~~----~p~~~~~------------------aaa~~~-------------------------------- 332 (1205)
T KOG0613|consen 307 KVTEEAPIGKGKP----GPESLQA------------------AAARPP-------------------------------- 332 (1205)
T ss_pred eeeEEeecccccc----Cchhhhh------------------hccCCc--------------------------------
Confidence 4433333221110 0000000 000000
Q ss_pred cccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcE-EEEEECCEecCCCC--CeEEEee
Q psy2145 482 RKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKPLEDSS--RITTKHD 558 (808)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~l~~~~--~~~~~~~ 558 (808)
..|.+..-..++ ....+..+.+.|.. .+.+.+. +.||+++.....+. .+.+...
T Consensus 333 --------------------~~~v~~~~~~~v-~a~d~~~v~m~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1205)
T KOG0613|consen 333 --------------------EVPVGLVRNLSV-TARDNTLVEMPTAL--SGTQKPDEAQGYHGEEVSSESLGALPCPVGT 389 (1205)
T ss_pred --------------------ccccccccccee-ccccCcceeecccc--cCCcCCchheeeccccccccccccccccccc
Confidence 122222222232 45677889999998 7888887 99999987665543 2333333
Q ss_pred CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeE
Q psy2145 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIF 638 (808)
Q Consensus 559 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~ 638 (808)
.....+.|..+...+.+.|.|.|.|..|.........|.....- ..++.|
T Consensus 390 ~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~g------------------------------t~~~~~ 439 (1205)
T KOG0613|consen 390 VTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPG------------------------------TQPPKF 439 (1205)
T ss_pred ccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCC------------------------------CCCccc
Confidence 33446889999999999999999999998777655555442110 011222
Q ss_pred EeecCCCccccCCceEEEEEEEeeCCCC--CeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 639 TQLLTGTSEIMEGQSAHYDCRVVPVGDP--TMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 639 ~~~~~~~~~v~~G~~v~l~C~v~~~g~P--~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
.....-...+..-+.+.+.|.+ .++| ...++|++++-+.. .++.........+|.+.-....|.|.|.-...-.
T Consensus 440 kk~~~~t~~L~~~~~i~~~~~~--~s~~~~~~~~tt~~~~~~~s--~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~ 515 (1205)
T KOG0613|consen 440 KKDVSTTDLLTVKDEITVRTPD--SSTSMPMTTVTTIKDGLPLS--DRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTL 515 (1205)
T ss_pred cccccccccccCCcccccccCC--CCccccceeEeeccCCcccc--cccccccccchhhheeeccCCCccchhhhhhhcc
Confidence 2221111123334778889988 5666 44566666665443 2332233344557888888999999996655444
Q ss_pred Ccce
Q psy2145 717 AGEA 720 (808)
Q Consensus 717 ~G~~ 720 (808)
.|..
T Consensus 516 ~~k~ 519 (1205)
T KOG0613|consen 516 QGKP 519 (1205)
T ss_pred CCCC
Confidence 4433
No 310
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.02 E-value=2.3e-05 Score=66.45 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=51.8
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCE-----Ec--------cCCCcEEEEEe--CCEEEEEEccCCCCCcEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV-----EL--------KMGSRFHVQHD--FGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~-----~l--------~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C 711 (808)
.+.+|++|+|.|.+.. ..+...+.|+|... .| ...+|+.+..+ .+..+|+|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~-~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPP-KNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCC-CCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 4678999999999842 24677899998531 11 11356666432 567899999999999999999
Q ss_pred EEEeCC
Q psy2145 712 KAINRA 717 (808)
Q Consensus 712 ~A~N~~ 717 (808)
.+.+..
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987763
No 311
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.98 E-value=2.4e-05 Score=66.91 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=48.3
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCC----EE---ee---c------------cCcEEEEeeCCeEEEEEcccCcC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNG----RP---VT---I------------GHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g----~~---l~---~------------~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
.+.+|++|+|.|.+.. .....+.|||.. .. |. . ..|+....+.....|.|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~--~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLN--SSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecC--CCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 4789999999999863 334579999832 11 11 0 12444444556778999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999998763
No 312
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.98 E-value=3.9e-05 Score=67.14 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=51.9
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--C-CEE--ee--------------ccCcEEEEeeC--CeEEEEEc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--N-GRP--VT--------------IGHRFRPIHDF--GYVALDII 113 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~-g~~--l~--------------~~~r~~~~~~~--~~~~L~I~ 113 (808)
.|..+ .+.+|++|+|.|...........+.||| . +.+ |. ...||....+. ..+.|.|.
T Consensus 3 ~~~~~-~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 3 ESGPG-LVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred cCCCe-EEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 56677 8999999999999863111245699998 2 222 10 02456655443 34689999
Q ss_pred ccCcCCCeeEEEEEEe
Q psy2145 114 DTIPEDSGTYTCRAVN 129 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n 129 (808)
++..+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998864
No 313
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.98 E-value=3.6e-05 Score=62.42 Aligned_cols=64 Identities=19% Similarity=0.458 Sum_probs=46.3
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe-eCc----EEEEEECCCCCCCCEEEEEEEEeCCe
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-DFG----YVAMDLSHVRAEDEGIYICKATNALG 586 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~-~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G 586 (808)
++|+|.+. .+.|.+.|+|+|||+.+.......... .++ ...|.+..-..+|...|+|+|.|..-
T Consensus 2 ~~LtC~a~-gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTS-GSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeC-CccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 68999995 568889999999999986543222221 222 23677876667788899999998743
No 314
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.95 E-value=0.0012 Score=68.66 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=56.8
Q ss_pred CeEEEEEcccCcCCCeeEEEEEEecC-cce--EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCC
Q psy2145 106 GYVALDIIDTIPEDSGTYTCRAVNLV-GFA--EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182 (808)
Q Consensus 106 ~~~~L~I~~~~~~D~G~Y~C~a~n~~-g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (808)
+.+.|.|.+++..++|.|.=++.+.. +.. +..++|.+. .
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y--------------------------------------r 328 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY--------------------------------------K 328 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe--------------------------------------c
Confidence 44579999999999999997765432 233 344444443 3
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCEEccC
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNVPIKS 228 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~~l~~ 228 (808)
+|.+.+. ...+.+|+...-.|.+.. .......+.||+||.++..
T Consensus 329 ~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 329 RPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred CCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 4433333 344779999999999862 2233568999999999874
No 315
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.95 E-value=2.8e-05 Score=67.03 Aligned_cols=68 Identities=24% Similarity=0.442 Sum_probs=48.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeC--C---EE---e-e-------------ccCcEEEE--eeCCeEEEEEcccC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKN--G---RP---V-T-------------IGHRFRPI--HDFGYVALDIIDTI 116 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g---~~---l-~-------------~~~r~~~~--~~~~~~~L~I~~~~ 116 (808)
.|.+|++|+|.|.+... .....+.|||. | +. | . ...|+... .+...+.|+|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~~-~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGI-SENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEecC-CCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 68899999999998731 23458999983 2 11 1 0 02355442 33456789999999
Q ss_pred cCCCeeEEEEEEe
Q psy2145 117 PEDSGTYTCRAVN 129 (808)
Q Consensus 117 ~~D~G~Y~C~a~n 129 (808)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999853
No 316
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.92 E-value=3.7e-05 Score=65.76 Aligned_cols=67 Identities=19% Similarity=0.428 Sum_probs=48.8
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEEC--C--EE---cc---C------------CCcEEEEEeCCEEEEEEccCCCC
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVN--G--VE---LK---M------------GSRFHVQHDFGYVTLDITKCVPA 704 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~--g--~~---l~---~------------~~~~~~~~~~~~~~L~I~~v~~~ 704 (808)
.+.+|++|+|.|.+ .+.-...+.|||. | .. |. . ..|+.+..+.....|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~--~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEV--LNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEe--cCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 36789999999998 4444567999983 3 11 10 0 23455555567789999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 705 DSGVYMCKAIN 715 (808)
Q Consensus 705 D~G~Y~C~A~N 715 (808)
|+|+|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999998754
No 317
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.91 E-value=0.011 Score=60.96 Aligned_cols=128 Identities=14% Similarity=0.098 Sum_probs=75.6
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEE
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 271 (808)
++.+..|+.+.+.-.. ..-...+.|--.-.+=..-..|.+...+..-.|.|..++...+|.|+=+.-+..+......
T Consensus 136 n~~a~~~g~l~y~sa~---~~~~~~~~~a~ga~Pg~~P~~y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~ 212 (466)
T PHA03270 136 NVTAPPGGELVYDSAP---NRTDPRVRWAEGAGPGARPRLYSVEGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGT 212 (466)
T ss_pred ecccCCCceEEeccCc---cccCcccccccCCCCCCCCccccccCCCCcceEEEEEcccccceEEEEEEecCCCceeeee
Confidence 3445566666554432 1123467775311110001133343333334699999999999999999877655444334
Q ss_pred EEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCc--cEE
Q psy2145 272 NLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK--LKV 349 (808)
Q Consensus 272 ~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v 349 (808)
.++|.. ..+|.+... ...+.+|+...-.|.+. .-+|. ..+
T Consensus 213 ~VtV~~-----------------------------------yr~Psvsv~--~~PvL~Ge~Y~AtC~va-~YYPp~Sv~l 254 (466)
T PHA03270 213 WTRVRM-----------------------------------FRRPSLSIR--PHAVLEGEPFGATCVAA-NYYPGDRAAF 254 (466)
T ss_pred EEEEEE-----------------------------------ecCCccccc--CCccccCCCceEEEEee-eecCCCceEE
Confidence 444432 124443322 23467899999999984 33443 789
Q ss_pred EEEECCEeccC
Q psy2145 350 TWLRNGVPIQA 360 (808)
Q Consensus 350 ~W~~~g~~l~~ 360 (808)
.||+||.++..
T Consensus 255 rWf~ng~~V~~ 265 (466)
T PHA03270 255 RWFEGGDEVFA 265 (466)
T ss_pred EEEeCCccccC
Confidence 99999998864
No 318
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.90 E-value=0.00013 Score=62.68 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=47.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE-EEeeCCe----EEEEEcccCcCCCe-eEEEEEEecCcc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGY----VALDIIDTIPEDSG-TYTCRAVNLVGF 133 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~-~~~~~~~----~~L~I~~~~~~D~G-~Y~C~a~n~~g~ 133 (808)
.+..|+.++|.|.+.++-.+...|+|+|||+.+..+..-. ...+++. ..|.+.. ...|.| .|+|.+.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCCC
Confidence 5568899999999998533457999999999986432211 1122212 2455554 344544 599999986433
No 319
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.89 E-value=0.0015 Score=67.93 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=54.9
Q ss_pred EEEEEccCCCCCcEEEEEEEEe-CceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeec
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVN-ALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFT 319 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n-~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~ 319 (808)
..|.|.+++..++|.|+=++.+ ..|.......++|.. ..+|.+.
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~-----------------------------------yr~PsVs 333 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS-----------------------------------YKRPNIT 333 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE-----------------------------------ecCCCcc
Confidence 4799999999999999877653 223333334444432 1244332
Q ss_pred cCCCceEeecCCeEEEEEEEeecCCCc--cEEEEEECCEeccC
Q psy2145 320 QPMRDIHVAENQAAHFEARLIPVGDSK--LKVTWLRNGVPIQA 360 (808)
Q Consensus 320 ~~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~ 360 (808)
. ....+.+|+...-.|.+. .-+|. ..+.||+||.++..
T Consensus 334 V--~p~PVL~Ge~YkAtC~vA-~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 334 V--IGDPVLLGNPYAAYCKVN-KYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred c--cCCccccCCCceEEEEee-eecCCCceEEEEEeCCcccCc
Confidence 2 233467899999999984 33443 78999999999875
No 320
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.88 E-value=0.00011 Score=61.42 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=47.4
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC---ceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS---RFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
+|.+.+...... |+.++|.|.+.+.-.+...++|+++|..+..+. ......++.+..-....+...+.+.|+|+
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~ 78 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR 78 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence 455554444332 788999999975334456999999997443322 22222233332223334445588999999
Q ss_pred EEeCc
Q psy2145 260 AVNAL 264 (808)
Q Consensus 260 a~n~~ 264 (808)
+.+..
T Consensus 79 V~H~~ 83 (93)
T cd07698 79 VEHSG 83 (93)
T ss_pred EEeCC
Confidence 98853
No 321
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.87 E-value=7.1e-05 Score=65.86 Aligned_cols=75 Identities=24% Similarity=0.345 Sum_probs=51.6
Q ss_pred ecCceeecCCCeEEEEEEEeecC----CCCeEEEEeeCCE-----E-cc-----------CCCceEEE--ecCceEEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVS----DNTMKVEWFHNNV-----P-IK-----------SGSRFTET--NNFGFVALDI 245 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~----~p~~~v~W~~~g~-----~-l~-----------~~~~~~~~--~~~~~~~L~I 245 (808)
.|+.+.+.+|++|+|.|...... .....+.|||... . +. -..|+... ...+.++|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 45567899999999999874111 1136799998421 1 10 01244442 2456679999
Q ss_pred ccCCCCCcEEEEEEEEeC
Q psy2145 246 MQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~ 263 (808)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
No 322
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.87 E-value=6.1e-05 Score=58.89 Aligned_cols=64 Identities=31% Similarity=0.479 Sum_probs=48.4
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcE----EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF----HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+.|.|.+ .+.+.+.+.|++++......... ..........|.|.++...|.|.|.|.+.+..+.
T Consensus 1 ~~l~C~~--~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 1 VTLTCLA--SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred CEEEEEe--cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 4789999 56889999999998876543321 1111234568999999999999999999988743
No 323
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.85 E-value=0.00015 Score=60.44 Aligned_cols=71 Identities=27% Similarity=0.420 Sum_probs=46.6
Q ss_pred cCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccC---cEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGH---RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~---r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
+.+|+.++|.|.+.++-.+...++|+|||..+..+. ......|+.........+...+...|+|++.+...
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 347899999999998655666999999999987541 11111222222222233445567799999988644
No 324
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.84 E-value=0.0026 Score=65.43 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=58.1
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
.|.|..++...+|.|+=+.-+..+.......++|.. ..+|.+.+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~------------------------------------yr~Psvsv 226 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRM------------------------------------FRRPSLSI 226 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEE------------------------------------ecCCcccc
Confidence 599999999999999999887666444334444431 33454443
Q ss_pred ecCceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCEEccC
Q psy2145 189 SLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNVPIKS 228 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~~l~~ 228 (808)
.+ ..+.+|+...-.|.+.. .......+.||+||.++..
T Consensus 227 ~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 227 RP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred cC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 33 34679999999999862 2233568999999998853
No 325
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.84 E-value=5.4e-05 Score=65.22 Aligned_cols=67 Identities=21% Similarity=0.482 Sum_probs=47.7
Q ss_pred cccCCceEEEEEEEeeCCC-CCeEEEEEEC--C---EEc------c-----------CCCcEEEE--EeCCEEEEEEccC
Q psy2145 647 EIMEGQSAHYDCRVVPVGD-PTMRFEWFVN--G---VEL------K-----------MGSRFHVQ--HDFGYVTLDITKC 701 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~-P~p~i~W~~~--g---~~l------~-----------~~~~~~~~--~~~~~~~L~I~~v 701 (808)
.+.+|++|+|.|.+ .+. ....+.||+- | +.+ . ...++.+. .+.....|+|.++
T Consensus 2 ~v~~G~~vtL~C~~--~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEA--KGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEE--ecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence 46789999999998 443 3568999973 3 110 0 02456543 2345678999999
Q ss_pred CCCCcEEEEEEEEe
Q psy2145 702 VPADSGVYMCKAIN 715 (808)
Q Consensus 702 ~~~D~G~Y~C~A~N 715 (808)
..+|+|.|.|...+
T Consensus 80 ~~~Dsg~YyCa~~~ 93 (107)
T cd07700 80 KPEDSGTYFCMTVG 93 (107)
T ss_pred CHHHCEEEEEeEcC
Confidence 99999999999864
No 326
>KOG1480|consensus
Probab=97.83 E-value=6.9e-06 Score=89.21 Aligned_cols=185 Identities=26% Similarity=0.366 Sum_probs=117.4
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEe-c------CceEEEEEccCCCCCcE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN-N------FGFVALDIMQCLPEDSG 254 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-~------~~~~~L~I~~~~~~D~G 254 (808)
.-|.|+..+.+..+..|.++.|.|.+ +|.++|...-++.-+.......+.. + ....+..|.....++.|
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a----~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~ 98 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKA----NPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSG 98 (909)
T ss_pred CcceeeecCCccceecCCCccceecC----CcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhccc
Confidence 45788999999999999999999987 3444443322222222221111111 0 01224556665555544
Q ss_pred ---EE--EEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeec
Q psy2145 255 ---VY--TCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAE 329 (808)
Q Consensus 255 ---~Y--~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~ 329 (808)
.| +|.|....|...+. ....+++.++ ..|...+....|..
T Consensus 99 ~~~d~~cQc~a~~~~g~~~s~------------------~a~vr~ay~r-----------------k~f~~~p~~q~V~~ 143 (909)
T KOG1480|consen 99 GPEDYWCQCVAWSDDGTVKSR------------------KATVRIAYLR-----------------KHFEQSPVGQEVQE 143 (909)
T ss_pred CccceeeeeeeecCCCcchhh------------------hHHHHHHHHH-----------------HhhccChhhheecc
Confidence 45 45566555521111 0112233322 13444555667888
Q ss_pred CCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEEEE
Q psy2145 330 NQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT-SSTLFVE 408 (808)
Q Consensus 330 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~ 408 (808)
+..+.+.|+. +.+.|...+.|++++..+..........+. .|++..+...|+|+|+|+|.|..+.... .+.+.|.
T Consensus 144 ~s~~~l~cr~-pe~~paae~~w~k~e~~~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 144 ETTLQLPCRP-PEGDPKAEVEWLKNEVVIDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred cccccccccC-cccchhhhhhccccCCCCCccccchhhhcC---CccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 9999999986 589999999999999998886655555554 4899999999999999999998887654 3555554
Q ss_pred e
Q psy2145 409 S 409 (808)
Q Consensus 409 ~ 409 (808)
.
T Consensus 220 v 220 (909)
T KOG1480|consen 220 V 220 (909)
T ss_pred E
Confidence 3
No 327
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.83 E-value=0.0025 Score=66.26 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=71.9
Q ss_pred EEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeecc
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ 320 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~ 320 (808)
..|.|..++..++|.|+=+..+..|.......++|.. ..+|.+..
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~-----------------------------------yr~Psvsv 242 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST-----------------------------------YNAPLVDL 242 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE-----------------------------------ecCCcccc
Confidence 3699999999999999877766656555555666642 12444332
Q ss_pred CCCceEeecCCeEEEEEEEeecCCCc--cEEEEEECCEeccCCC----cEEEEeeCc---EEEEEEccCCC-CCCeEEEE
Q psy2145 321 PMRDIHVAENQAAHFEARLIPVGDSK--LKVTWLRNGVPIQASN----RVSTMHDFG---YVALNFKYTYP-EDSGTYTC 390 (808)
Q Consensus 321 ~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~~~----~~~~~~~~~---~~~L~I~~v~~-~d~G~Y~C 390 (808)
. ...+.+|+...-.|.+. .-+|. ..+.||.||.++.... ......++. .++|.+..... +..-..+|
T Consensus 243 ~--~~PvL~Ge~y~A~C~aa-~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC 319 (486)
T PHA03273 243 S--VHPSLKGENYRAVCVVA-SYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRC 319 (486)
T ss_pred c--CCccccCCCceEEEEee-eecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceE
Confidence 2 23467899999999984 33443 7899999999988322 222222333 23444444332 22336778
Q ss_pred EEEc
Q psy2145 391 RAVN 394 (808)
Q Consensus 391 ~a~n 394 (808)
.+.=
T Consensus 320 ~v~W 323 (486)
T PHA03273 320 SIEW 323 (486)
T ss_pred EEEE
Confidence 7653
No 328
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.79 E-value=0.0037 Score=65.01 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=73.9
Q ss_pred EEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 108 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
+.|.|..++..++|.|+=+..+..|.......++|.. ..+|.+.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~------------------------------------yr~Psvs 241 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST------------------------------------YNAPLVD 241 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE------------------------------------ecCCccc
Confidence 5699999999999999988766656555555665532 3345544
Q ss_pred eecCceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCEEccC-CC---ceEEEecCce---EEEEEccCCC-CCcEEEEE
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNVPIKS-GS---RFTETNNFGF---VALDIMQCLP-EDSGVYTC 258 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~~l~~-~~---~~~~~~~~~~---~~L~I~~~~~-~D~G~Y~C 258 (808)
+.+ ..+.+|+...-.|.+.. .......+.||+||.++.. .. ......+++. ++|.+..... +..=..+|
T Consensus 242 v~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC 319 (486)
T PHA03273 242 LSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRC 319 (486)
T ss_pred ccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceE
Confidence 333 34779999999999862 2233568999999999872 21 1222223331 2344444322 22237789
Q ss_pred EEEe
Q psy2145 259 RAVN 262 (808)
Q Consensus 259 ~a~n 262 (808)
.+.=
T Consensus 320 ~v~W 323 (486)
T PHA03273 320 SIEW 323 (486)
T ss_pred EEEE
Confidence 9864
No 329
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.77 E-value=0.0003 Score=60.46 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=45.3
Q ss_pred cccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEE-EEeC-C---EEEEEEccCCCCCcE-EEEEEEEeCC
Q psy2145 647 EIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRFHV-QHDF-G---YVTLDITKCVPADSG-VYMCKAINRA 717 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~~~~~~~-~~~~-~---~~~L~I~~v~~~D~G-~Y~C~A~N~~ 717 (808)
.+..|+.++|.|.+. ...| ...|+|+|||+.+..+..-.. ..++ . .+.|.+.. ...|.| .|+|.+....
T Consensus 17 ~~~~g~~~tL~C~a~-gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAH-GFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEe-eEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 456788999999995 3356 479999999999875322111 1122 1 34566654 445555 4999998874
No 330
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.74 E-value=0.00027 Score=58.84 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=44.4
Q ss_pred cCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce-EE-EecCc-eEEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF-TE-TNNFG-FVALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 196 ~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~-~~~~~-~~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
..|+.++|.|.+.+.-.+...+.|++||+.+..+... .. .+.+| +.......+...+...|+|++.+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 4689999999998655556799999999998654111 11 12222 2222222334456669999998854
No 331
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.74 E-value=0.00011 Score=59.56 Aligned_cols=61 Identities=28% Similarity=0.369 Sum_probs=42.6
Q ss_pred cEEEEEEEeeCCCCCceEEEEeCCE-----Eee-------------ccCcEEEEee--CCeEEEEEcccCcCCCeeEEEE
Q psy2145 67 HAHFECKLEPVTDSNLKVEWFKNGR-----PVT-------------IGHRFRPIHD--FGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 67 ~v~l~C~~~~~~~p~~~v~W~~~g~-----~l~-------------~~~r~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
+|+|.|.+.....+...+.|++... .|. ...|+....+ .+.++|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999985322224899998431 111 1245655544 6778999999999999999996
Q ss_pred E
Q psy2145 127 A 127 (808)
Q Consensus 127 a 127 (808)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 332
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.68 E-value=0.00021 Score=55.72 Aligned_cols=62 Identities=31% Similarity=0.602 Sum_probs=46.4
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCe----EEEeeCcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI----TTKHDFGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
+.|.|.+ .+.+...+.|++++......... ..........|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~--~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLA--SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEe--cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4789999 56788899999998776543321 11112334579999999999999999999876
No 333
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.68 E-value=0.00041 Score=57.35 Aligned_cols=69 Identities=14% Similarity=0.299 Sum_probs=47.0
Q ss_pred cCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE---EEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF---RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~---~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
+..|...+|.|.+.++-.+...|+|+|||.++. +... ....|+.+....-..+...+...|+|++.+..
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 345778899999998656678999999999987 4321 11223333223333445678888999998753
No 334
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.68 E-value=0.00045 Score=57.08 Aligned_cols=68 Identities=16% Similarity=0.360 Sum_probs=45.7
Q ss_pred ecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE---EEecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT---ETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 195 v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~---~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
+..|+..+|.|.+.+.-.+...++|+|||+++. +.... ...++.+.......+.+.+...|+|++.+.
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 446788899999987666688999999999986 43211 122222222223344567777999999884
No 335
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.67 E-value=0.00039 Score=58.02 Aligned_cols=66 Identities=18% Similarity=0.311 Sum_probs=43.1
Q ss_pred CceEEEEEEEeeCCC-CC-eEEEEEECCEEccCCC---cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 651 GQSAHYDCRVVPVGD-PT-MRFEWFVNGVELKMGS---RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 651 G~~v~l~C~v~~~g~-P~-p~i~W~~~g~~l~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
|+.++|.|.+ .|. |. ..|+|++||+.+..+. .+....++.+.......+...|.+.|+|.+.+..-
T Consensus 14 ~~~~~L~C~a--~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHA--TGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEE--EEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 7789999999 674 54 4999999997544332 22222233333344444555688999999987743
No 336
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.67 E-value=0.00014 Score=61.47 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=47.7
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE-E-EEe-eCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF-R-PIH-DFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~-~-~~~-~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
...+++.++|.|.+.++-.+...|.|+|||..+..+... . ... ++.+ ..|.+......+...|+|++.+..
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 566788999999999854447899999999998643111 1 112 2222 245555554445678999998764
No 337
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.66 E-value=0.00026 Score=56.36 Aligned_cols=65 Identities=28% Similarity=0.488 Sum_probs=43.3
Q ss_pred cEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE-EEE--eeCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF-RPI--HDFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 67 ~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~-~~~--~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.++|.|.+.++-.+...|+|+|||+++..+... ... .++.. +.|.|.....++...|+|+|.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 378999999853444799999999975543221 111 12222 257776666677789999998753
No 338
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.66 E-value=0.00035 Score=57.94 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=43.1
Q ss_pred cCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE--EEecCce----EEEEEccCCCCCcEEEEEEEEeC
Q psy2145 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT--ETNNFGF----VALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 196 ~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~--~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
..|+.++|.|.+.+.-.+...++|++||.++..+.... ..+.++. ..|.+. +.+...|+|++.+.
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 44677899999986555578999999999986542211 1122232 234443 45566999999875
No 339
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.66 E-value=0.00041 Score=57.72 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=47.1
Q ss_pred CeEEEEEEEeecCCCCeEEEEeeCCE----Ecc-----------C--CCceEEEe-cCceEEEEEccCCCCCcEEEEEEE
Q psy2145 199 QRAHFECRLIPVSDNTMKVEWFHNNV----PIK-----------S--GSRFTETN-NFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 199 ~~v~L~C~~~~~~~p~~~v~W~~~g~----~l~-----------~--~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
+.++|.|... ......+|+|.|... .+. . ..|..... .....+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~-~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYP-KTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcC-CCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 4689999984 234567899988421 111 0 12222221 113458999999999999999999
Q ss_pred Ee-CceeEEEEEE
Q psy2145 261 VN-ALGQAVTSGN 272 (808)
Q Consensus 261 ~n-~~g~~~~~~~ 272 (808)
.. +.|.....+.
T Consensus 80 ~t~P~g~~~~~i~ 92 (96)
T cd05889 80 VTYPQGSWEKVIE 92 (96)
T ss_pred EeCCCCCeEEEEE
Confidence 77 5666555443
No 340
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.64 E-value=0.00048 Score=57.30 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=48.2
Q ss_pred CcEEEEEEEeeCCCCCceEEEEeCCE----Eeec-----c--------CcEEEEe-eCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 66 GHAHFECKLEPVTDSNLKVEWFKNGR----PVTI-----G--------HRFRPIH-DFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 66 ~~v~l~C~~~~~~~p~~~v~W~~~g~----~l~~-----~--------~r~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
+.++|.|.... ......|+|.|... .|.. + +|+.... .....+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPK-TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCC-CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 46899999874 34566899998421 2221 1 2333321 123468999999999999999999
Q ss_pred Eec-CcceEEEEEE
Q psy2145 128 VNL-VGFAEVQATL 140 (808)
Q Consensus 128 ~n~-~g~~~~~~~l 140 (808)
..- .|..+..+.|
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 754 5555544443
No 341
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.63 E-value=0.00043 Score=57.78 Aligned_cols=72 Identities=10% Similarity=0.159 Sum_probs=45.1
Q ss_pred ccCCCCcEEEEEEEeeC-CCCCceEEEEeCCEEe-eccC-cEEEEeeCCeE---EEEEcccCcCCCeeEEEEEEecCc
Q psy2145 61 NLRERGHAHFECKLEPV-TDSNLKVEWFKNGRPV-TIGH-RFRPIHDFGYV---ALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~-~~p~~~v~W~~~g~~l-~~~~-r~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
.+..|+.++|.|.+.++ -.+...|+|+|||... .... ......|+.+. .|.+..-...+.-.|+|.+.+...
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 67789999999999987 5667799999987433 2111 11112222222 344444333345579999988643
No 342
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.62 E-value=0.00032 Score=58.29 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=46.3
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccC---cEEEEeeCCe---EEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGH---RFRPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~---r~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
....++.++|.|.+.++-.+...|+|+|||..+..+. ......++.+ ..|.|......+...|+|++.+....
T Consensus 10 ~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 10 DTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred HcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 3335677999999998544568999999999874321 1111122221 24555544444667999999886443
No 343
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.61 E-value=0.00035 Score=60.24 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=52.9
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE--EEEeeC-Ce----EEEEEcccCcCC-CeeEEEE
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF--RPIHDF-GY----VALDIIDTIPED-SGTYTCR 126 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~--~~~~~~-~~----~~L~I~~~~~~D-~G~Y~C~ 126 (808)
.|... .+.+++.++|.|.+.++-.+...|.|+|||..+..+... ....++ +. ..|.|......| ...|+|.
T Consensus 9 ~ps~~-e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~ 87 (115)
T cd05769 9 PPSEA-EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCI 87 (115)
T ss_pred CcChH-HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEE
Confidence 44444 566788899999999854444799999999998754321 111221 22 246666544434 5689999
Q ss_pred EEecCcceEEEE
Q psy2145 127 AVNLVGFAEVQA 138 (808)
Q Consensus 127 a~n~~g~~~~~~ 138 (808)
+.+.........
T Consensus 88 V~H~g~~~~~~~ 99 (115)
T cd05769 88 VQFYGGTDTDKW 99 (115)
T ss_pred EEEeCCccceee
Confidence 998755444433
No 344
>KOG1480|consensus
Probab=97.61 E-value=2e-05 Score=85.74 Aligned_cols=186 Identities=25% Similarity=0.379 Sum_probs=114.1
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC---c----EEEEEECCCCCCCC
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF---G----YVAMDLSHVRAEDE 574 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~---~----~~~L~I~~v~~~D~ 574 (808)
.-|.|+..+.+. .+..|..+.|.|.+ +|.+++...-+++-+...........+ | .....|.....++.
T Consensus 23 ~l~~~~~~p~~~-yii~~~p~~l~c~a----~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~ 97 (909)
T KOG1480|consen 23 DLPHFTTEPKSA-YIIKNKPLRLQCKA----NPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETS 97 (909)
T ss_pred CcceeeecCCcc-ceecCCCccceecC----CcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcc
Confidence 457788877776 47789999999986 566666555555444433322222111 1 11344444333332
Q ss_pred E---EE--EEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 575 G---IY--ICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 575 G---~Y--~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
| .| .|.|....|...+ .+. .-+|..+ +=.|.+.+.. ..|.
T Consensus 98 ~~~~d~~cQc~a~~~~g~~~s--~~a----------------~vr~ay~----------------rk~f~~~p~~-q~V~ 142 (909)
T KOG1480|consen 98 GGPEDYWCQCVAWSDDGTVKS--RKA----------------TVRIAYL----------------RKHFEQSPVG-QEVQ 142 (909)
T ss_pred cCccceeeeeeeecCCCcchh--hhH----------------HHHHHHH----------------HHhhccChhh-heec
Confidence 2 34 4566666661111 000 0011111 1112222222 3577
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-EEEEEE
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKV 728 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s~~l~V 728 (808)
++..+.|.|... .|+|...++|+|||..+.++..+....+. .|+|..+...|+|.|+|+|.|-++.-.. ++.+.|
T Consensus 143 ~~s~~~l~cr~p-e~~paae~~w~k~e~~~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 143 EETTLQLPCRPP-EGDPKAEVEWLKNEVVIDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAKRKSDPATVQV 218 (909)
T ss_pred ccccccccccCc-ccchhhhhhccccCCCCCccccchhhhcC---CccccchhhhhcccceeeeehhhccccccceEEEE
Confidence 889999999874 89999999999999999887666666654 5999999999999999999999985543 445554
Q ss_pred EeC
Q psy2145 729 KSK 731 (808)
Q Consensus 729 ~~~ 731 (808)
...
T Consensus 219 yv~ 221 (909)
T KOG1480|consen 219 YVN 221 (909)
T ss_pred EEc
Confidence 433
No 345
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.61 E-value=0.00023 Score=60.25 Aligned_cols=77 Identities=19% Similarity=0.363 Sum_probs=49.0
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE--EEee---CCe----EEEEEcccCcCCCeeEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR--PIHD---FGY----VALDIIDTIPEDSGTYT 124 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~--~~~~---~~~----~~L~I~~~~~~D~G~Y~ 124 (808)
..|... .+..|+.++|.|.+.++-.+...|+|+|||.++..+.... ...+ ++. ..|.|..-...+...|+
T Consensus 6 ~~p~~~-~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~yt 84 (102)
T cd05768 6 LPPPSE-ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFT 84 (102)
T ss_pred eCcChH-HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEE
Confidence 344443 5667899999999998545566899999999876432111 1111 122 24555433334556899
Q ss_pred EEEEecC
Q psy2145 125 CRAVNLV 131 (808)
Q Consensus 125 C~a~n~~ 131 (808)
|++.+..
T Consensus 85 C~V~H~~ 91 (102)
T cd05768 85 CVVGHEA 91 (102)
T ss_pred EEeEeCC
Confidence 9998764
No 346
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.60 E-value=0.00028 Score=61.77 Aligned_cols=74 Identities=26% Similarity=0.365 Sum_probs=49.8
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--C-EE--c---c-----------CCCceEEEecC--ceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--N-VP--I---K-----------SGSRFTETNNF--GFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g-~~--l---~-----------~~~~~~~~~~~--~~~~L~I~~ 247 (808)
.|....+.+|++|+|.|...........+.|||. | .+ | . ...++....+. ....|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 4556788999999999987321112456999982 2 22 1 0 01345444332 345799999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999999864
No 347
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.60 E-value=0.0005 Score=56.93 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=46.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE-EEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-QHDFG----YVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
|+.+.|.|.+. .|.|.|.|+|+.+|..+........ ..+.+ .+.|.+..-..++...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~-~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSS-GGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEE-EEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeC-CeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 78999999886 7999999999999988821111111 11111 2457776544456778999999986543
No 348
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.58 E-value=0.00028 Score=57.22 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=42.4
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCE-----Ec-------------cCCCcEEEEEe--CCEEEEEEccCCCCCcEEEEEE
Q psy2145 653 SAHYDCRVVPVGDPTMRFEWFVNGV-----EL-------------KMGSRFHVQHD--FGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 653 ~v~l~C~v~~~g~P~p~i~W~~~g~-----~l-------------~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
+|.|.|.+...+.+...+.|++... .| ...+|+.+... .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999953333335899998431 01 11356666555 6678999999999999999996
No 349
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.57 E-value=0.00052 Score=57.04 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=47.9
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc-e-EEEecCce----EEEEEccCCCCCcEEEEEEEEeC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR-F-TETNNFGF----VALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~-~-~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
|.......++.++|.|.+.+.-.+...|+|++||..+..+.. . .....++. ..|.|..-...+...|+|++.+.
T Consensus 6 ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 6 SSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred cChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 333333356779999999865555689999999998743211 1 11122222 24556654455667999999986
Q ss_pred cee
Q psy2145 264 LGQ 266 (808)
Q Consensus 264 ~g~ 266 (808)
...
T Consensus 86 ~~~ 88 (94)
T cd05847 86 GTT 88 (94)
T ss_pred Cee
Confidence 543
No 350
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.56 E-value=0.00049 Score=56.04 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=47.0
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEE--eeCCeE-EEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI--HDFGYV-ALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~--~~~~~~-~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
..++.++|.|.+.++......|.|+++|..+..+...... ..++.+ ......+...+...|+|++.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCCC
Confidence 3499999999999865556799999999998765433221 223332 2222233356667899999986543
No 351
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.55 E-value=0.00056 Score=56.77 Aligned_cols=66 Identities=27% Similarity=0.523 Sum_probs=44.0
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc---EEEEeeCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r---~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
..|+.++|.|.+.++-.+...++|+|||..+..+.. .....|+.+ ..|.|. .++...|+|.+.+..
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 346778999999986455689999999999865421 122223322 235443 456679999998763
No 352
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.55 E-value=0.00049 Score=58.17 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=49.4
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcE-E-EEE-eCCE---EEEEEccCCCCCcEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRF-H-VQH-DFGY---VTLDITKCVPADSGV 708 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~~~~~-~-~~~-~~~~---~~L~I~~v~~~D~G~ 708 (808)
|.....+.......+++.++|.|.+... .| ...|.|++||+.+..+... . ... ++.+ +.|.+..-...+...
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gf-yP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDF-YPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeE-ECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 3333344444456678889999999532 45 7799999999998643111 1 111 2222 345554444345678
Q ss_pred EEEEEEeCC
Q psy2145 709 YMCKAINRA 717 (808)
Q Consensus 709 Y~C~A~N~~ 717 (808)
|+|.+....
T Consensus 81 ~sC~V~H~~ 89 (100)
T cd07699 81 YTCEVTHEG 89 (100)
T ss_pred EEEEEEecC
Confidence 999987664
No 353
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.54 E-value=0.033 Score=57.16 Aligned_cols=82 Identities=11% Similarity=0.066 Sum_probs=52.7
Q ss_pred EEEEEccCCCCCcEEEEEEEEeCceeEEE--EEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCee
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVNALGQAVT--SGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVF 318 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~--~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~ 318 (808)
..|.|.++...|+|.|+-...+....... ...+.+.. .||.+
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~------------------------------------RPPsV 250 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ------------------------------------RPASV 250 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe------------------------------------cCCCc
Confidence 47999999999999776555543333222 22333322 34444
Q ss_pred ccCCCceEeecCCeEEEEEEEeecCCCc--cEEEEEECCEeccCC
Q psy2145 319 TQPMRDIHVAENQAAHFEARLIPVGDSK--LKVTWLRNGVPIQAS 361 (808)
Q Consensus 319 ~~~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~~ 361 (808)
...+ ..+.+|++..-.|.+. .-+|. ..+.||.||.++...
T Consensus 251 sV~a--~PVL~Ge~YkAtC~vA-nYYPP~SvrlrWf~nG~~V~~~ 292 (490)
T PHA03271 251 DVLA--PPVLSGENYKASCIVR-HFYPPGSVYVSWRQNGNIATPR 292 (490)
T ss_pred cccC--CccccCCCceEEEEee-eecCCCceEEEEEeCCccccCc
Confidence 3322 2357899999999984 33443 789999999988654
No 354
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.53 E-value=0.00063 Score=56.34 Aligned_cols=67 Identities=15% Similarity=0.356 Sum_probs=44.0
Q ss_pred CCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC-ceEEEecCce----EEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS-RFTETNNFGF----VALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
|+.+.|.|.+.+ +.|.+.|.|+.++..+.... ......+.+. ..|.+..-...+...++|+|.|..-
T Consensus 14 ~~~~~~~C~s~~-~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSG-GYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEE-EBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCC-eECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 789999999874 99999999999998872111 1112222221 2466654444466689999998653
No 355
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.51 E-value=0.00063 Score=54.09 Aligned_cols=64 Identities=23% Similarity=0.390 Sum_probs=42.1
Q ss_pred eEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE-E-EecCce----EEEEEccCCCCCcEEEEEEEEeC
Q psy2145 200 RAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT-E-TNNFGF----VALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 200 ~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~-~-~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
.++|.|.+.+.-.+.+.+.|+|||+++..+.... . ...+|. +.|.|......+...|+|+|.+.
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 3789999975333457999999999854432111 1 122222 24666666667778999999875
No 356
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.51 E-value=0.017 Score=59.07 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=55.4
Q ss_pred CeEEEEEcccCcCCCeeEEEEEEecCcce--EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCC
Q psy2145 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFA--EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQA 183 (808)
Q Consensus 106 ~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (808)
....|.|.++...|+|.|+....+..... +....+.+. ..|
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~-------------------------------------~RP 247 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC-------------------------------------QRP 247 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEE-------------------------------------ecC
Confidence 33579999999999997755554433322 233333333 445
Q ss_pred CeEEeecCceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCEEccC
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNVPIKS 228 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~~l~~ 228 (808)
|.+.+.+ ..+.+|+...-.|.+.. .......+.||+||.++..
T Consensus 248 PsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 248 ASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP 291 (490)
T ss_pred CCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 5554444 33679999999999962 2223568999999998754
No 357
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.50 E-value=0.00042 Score=57.63 Aligned_cols=72 Identities=17% Similarity=0.315 Sum_probs=44.8
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE-EEeeCCeE----EEEEcccCcCCCeeEEEEEEec
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGYV----ALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~-~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
|... ++..+..++|.|.+.++-.+...|+|+|||..+..+.... ...+++.+ .|.|..-. ....|+|.+.+.
T Consensus 8 ps~~-e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 8 PSKK-EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred CCHH-HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 4433 5556788999999998655677999999999876542211 11122221 34443221 234599999874
No 358
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.50 E-value=0.00034 Score=52.12 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=35.8
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
.|.+|+|+|.. .+.. |.|++|+..+...+. .+.+.+-. +++|.|+|.|.|.
T Consensus 6 sGTtVtlTCP~--~~~~---i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPL--SGDD---IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCC--CCCC---ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 59999999975 2222 999999976664322 23333444 8999999998654
No 359
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.44 E-value=0.00054 Score=58.03 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=46.0
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce--EEEec---Cce----EEEEEccCCCCCcEEEEEEEEe
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--TETNN---FGF----VALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~--~~~~~---~~~----~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
...+..|+.++|.|.+.+.-.+...+.|+|||+++...... ....+ +|. ..|.|..-...+...|+|++.+
T Consensus 10 ~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H 89 (102)
T cd05768 10 SEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGH 89 (102)
T ss_pred hHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEe
Confidence 34455688999999997655556789999999987643211 11111 232 2455544434456689999987
Q ss_pred C
Q psy2145 263 A 263 (808)
Q Consensus 263 ~ 263 (808)
.
T Consensus 90 ~ 90 (102)
T cd05768 90 E 90 (102)
T ss_pred C
Confidence 5
No 360
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.41 E-value=0.00082 Score=57.95 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=52.8
Q ss_pred CeEEee-cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc---eEEEecCce----EEEEEccCCCCC-cE
Q psy2145 184 PIFTTS-LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR---FTETNNFGF----VALDIMQCLPED-SG 254 (808)
Q Consensus 184 P~~~~~-~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~----~~L~I~~~~~~D-~G 254 (808)
|.+.+- |....+.+++.++|.|.+.+.-.+...|.|+|||..+..+.. .....+++. ..|.|......| ..
T Consensus 3 P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~ 82 (115)
T cd05769 3 PTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRN 82 (115)
T ss_pred CEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCC
Confidence 444333 334445567889999999864444579999999999875432 112222132 246666554444 55
Q ss_pred EEEEEEEeCceeEE
Q psy2145 255 VYTCRAVNALGQAV 268 (808)
Q Consensus 255 ~Y~C~a~n~~g~~~ 268 (808)
.|+|.+.+......
T Consensus 83 ~ytC~V~H~g~~~~ 96 (115)
T cd05769 83 TFTCIVQFYGGTDT 96 (115)
T ss_pred eEEEEEEEeCCccc
Confidence 99999998644433
No 361
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.35 E-value=0.00096 Score=55.69 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=45.7
Q ss_pred ecCceeecCCCeEEEEEEEeec-CCCCeEEEEeeCCEEc-cCCCceEEEecCc-e---EEEEEccCCCCCcEEEEEEEEe
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPV-SDNTMKVEWFHNNVPI-KSGSRFTETNNFG-F---VALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~~~g~~l-~~~~~~~~~~~~~-~---~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
+|....+..|+.++|.|.+.+. -.+...|+|+|||... ...........+| + ..|.+..-...+.-.|+|.+.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3444456679999999999765 4556799999987433 2111111112222 2 1355554333345589999988
Q ss_pred Cc
Q psy2145 263 AL 264 (808)
Q Consensus 263 ~~ 264 (808)
..
T Consensus 85 ~~ 86 (96)
T cd07696 85 PD 86 (96)
T ss_pred CC
Confidence 54
No 362
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.30 E-value=0.27 Score=50.40 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=55.8
Q ss_pred ceEeecCCeEEEEEEEeecCCCc-cEEEEEECCEeccC-----------------CCcEEEEe------eCcEEEEEEcc
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSK-LKVTWLRNGVPIQA-----------------SNRVSTMH------DFGYVALNFKY 379 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~g~~l~~-----------------~~~~~~~~------~~~~~~L~I~~ 379 (808)
...+..|..+.|+|.++--|+.. ..+.|+--|-++.+ .+.+.+.. +-..++|+|.+
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 34556699999999985334443 57899887765542 12222222 12345899999
Q ss_pred CCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2145 380 TYPEDSGTYTCRAVNELGEAVTSSTLFVE 408 (808)
Q Consensus 380 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 408 (808)
+..+.+|-|+|+|....-......-|.|.
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~ 381 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVA 381 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEec
Confidence 99999999999998754344444445553
No 363
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.29 E-value=0.0012 Score=55.82 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=51.7
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCC-ceEEEEe--CCEEee--------------ccCcEEEE--eeCCeEEEEEccc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSN-LKVEWFK--NGRPVT--------------IGHRFRPI--HDFGYVALDIIDT 115 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~-~~v~W~~--~g~~l~--------------~~~r~~~~--~~~~~~~L~I~~~ 115 (808)
++... .+..|+.++|.|.+.+..... ..+.|+| +| .+. ...|+... .+...++|.|.++
T Consensus 4 ~~~~~-lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L 81 (115)
T cd05721 4 QQSPV-LASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL 81 (115)
T ss_pred ecCCe-EEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC
Confidence 34444 788999999999998655555 6899998 33 211 12344333 3456789999999
Q ss_pred CcCCCeeEEEEEE
Q psy2145 116 IPEDSGTYTCRAV 128 (808)
Q Consensus 116 ~~~D~G~Y~C~a~ 128 (808)
+.+|++.|.|..+
T Consensus 82 ~a~DTa~Y~Ca~e 94 (115)
T cd05721 82 RANQTDIYFCKIE 94 (115)
T ss_pred CHHHCeEEEEEee
Confidence 9999999999863
No 364
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.27 E-value=0.00046 Score=51.43 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=36.8
Q ss_pred cCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeC
Q psy2145 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584 (808)
Q Consensus 517 ~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 584 (808)
..|.+|+|+|.. .+.. +.|++|+..+..... .+.+.+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~--~~~~---i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPL--SGDD---IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCC--CCCC---ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 469999999975 3222 999999977665332 23444444 8999999999654
No 365
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.26 E-value=0.0011 Score=53.98 Aligned_cols=68 Identities=18% Similarity=0.332 Sum_probs=45.7
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEE-E-ecCceEE-EEEccCCCCCcEEEEEEEEeCc
Q psy2145 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE-T-NNFGFVA-LDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 197 ~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~-~-~~~~~~~-L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
.++.++|.|.+.+.......|.|++||..+..+..... . ..+|.++ .....+...+...|+|++.+..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECC
Confidence 48999999999875556789999999999876543321 1 2334322 2222333566669999998854
No 366
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.24 E-value=0.0011 Score=55.03 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=39.7
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEEeC-CE---EEEEEccCCCCCcE-EEEEEEEe
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF-HVQHDF-GY---VTLDITKCVPADSG-VYMCKAIN 715 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~-~~---~~L~I~~v~~~D~G-~Y~C~A~N 715 (808)
..+..+..++|.|.+...-.+...|+|++||+.+..+... ....++ .+ +.|.|. +.+.| .|+|.+.-
T Consensus 11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~~~~~~~ysC~V~H 83 (96)
T cd07697 11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---KDSLGKKFRCIYKH 83 (96)
T ss_pred HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---chhCCCeEEEEEEE
Confidence 3455577899999995333346789999999987654211 111111 22 244444 33234 49999865
No 367
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.17 E-value=0.0031 Score=53.48 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=50.9
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCC-eEEEEee--CCEEcc--------------CCCceE--EEecCceEEEEEccCC
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFH--NNVPIK--------------SGSRFT--ETNNFGFVALDIMQCL 249 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~--~g~~l~--------------~~~~~~--~~~~~~~~~L~I~~~~ 249 (808)
++....+..|+.++|.|.+++..... ..+.|+| +| .+. ...++. .......++|.|.+++
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 44556788899999999997655555 7899998 33 110 112222 2233456789999999
Q ss_pred CCCcEEEEEEEE
Q psy2145 250 PEDSGVYTCRAV 261 (808)
Q Consensus 250 ~~D~G~Y~C~a~ 261 (808)
.+|++.|.|..+
T Consensus 83 a~DTa~Y~Ca~e 94 (115)
T cd05721 83 ANQTDIYFCKIE 94 (115)
T ss_pred HHHCeEEEEEee
Confidence 999999999863
No 368
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.11 E-value=0.0031 Score=52.48 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=45.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE-EEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcc--eEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-QHDFG----YVTLDITKCVPADSGVYMCKAINRAGE--AVSS 723 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~--~~~s 723 (808)
.....+.|.+. .|.|.+.|.|+++ +........ ...+| .+.|.+.....+|.-.|+|.|.|..-. ...+
T Consensus 15 ~~~~va~C~s~-~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~ 90 (95)
T cd05719 15 EPVTVATCVSA-NGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFS 90 (95)
T ss_pred CccEEEEEECC-CCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 34577899886 7999999999997 111111111 11122 346777665555666799999999744 3444
Q ss_pred EEEE
Q psy2145 724 TSLK 727 (808)
Q Consensus 724 ~~l~ 727 (808)
+.|.
T Consensus 91 ~~L~ 94 (95)
T cd05719 91 VTLN 94 (95)
T ss_pred EEee
Confidence 4443
No 369
>PHA02982 hypothetical protein; Provisional
Probab=97.02 E-value=0.017 Score=53.41 Aligned_cols=81 Identities=15% Similarity=0.268 Sum_probs=58.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCC-EEeec------------------cCcEEEEeeCCeEEEEEcccCcCCCe
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNG-RPVTI------------------GHRFRPIHDFGYVALDIIDTIPEDSG 121 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g-~~l~~------------------~~r~~~~~~~~~~~L~I~~~~~~D~G 121 (808)
.+..|++|.|.|.... ++.-....|+++. ..|.. ...+.++-++..++|+|.++..+..|
T Consensus 35 ~a~vd~~V~L~C~~~~-~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 35 NATVDQEVKLQCLFKD-ADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hccCCCcEEEEecCCC-cchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 6788999999999653 4555688999844 33331 12345566778889999999999999
Q ss_pred eEEEEEEecCcceEE-EEEEEE
Q psy2145 122 TYTCRAVNLVGFAEV-QATLQC 142 (808)
Q Consensus 122 ~Y~C~a~n~~g~~~~-~~~l~V 142 (808)
-|+|+|....+..+. .--|.|
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred ceEEEEecCCCchheeheeeeE
Confidence 999999886554432 444544
No 370
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.01 E-value=0.0041 Score=51.81 Aligned_cols=67 Identities=9% Similarity=0.193 Sum_probs=42.1
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc-e-EEEe-cCce---EEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR-F-TETN-NFGF---VALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 197 ~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~-~-~~~~-~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
.++.++|.|.+.+.-.+...|+|+|||+. ..+.. . .... ++.+ ..|.+..-.....-.|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999865556789999999998 33311 0 1122 2222 235555433333568999998853
No 371
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.96 E-value=0.0049 Score=51.28 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=44.4
Q ss_pred CceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEE-EeeCc----EEEEEECCCCCCCCEEEEEEEEeCCeeEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT-KHDFG----YVAMDLSHVRAEDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~-~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 591 (808)
....+.|.+. .|.|.+.|+|+++ +........ ...+| ...|.+.....+|.-.|+|+|.|..-.....
T Consensus 16 ~~~va~C~s~-~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 16 PVTVATCVSA-NGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred ccEEEEEECC-CCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 4567899986 7999999999997 211111111 11122 2367787777777789999999987443333
No 372
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.90 E-value=0.0025 Score=53.04 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=45.5
Q ss_pred eecCceeecCCCeEEEEEEEeecC-CCCeEEEEeeCCEEccCCCceEEEecCc-e---EEEEEccCCCCCcEEEEEEEEe
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETNNFG-F---VALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~-~p~~~v~W~~~g~~l~~~~~~~~~~~~~-~---~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
..|....+..+..++|.|.+.+.. .....|.|.++|.. ...........++ + ..|.|..-...-...|+|++.+
T Consensus 9 ~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H 87 (99)
T cd04986 9 QRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTH 87 (99)
T ss_pred ECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEEC
Confidence 334445566789999999997645 34689999999876 2111111122223 2 2355553333444579999988
Q ss_pred Cc
Q psy2145 263 AL 264 (808)
Q Consensus 263 ~~ 264 (808)
..
T Consensus 88 ~~ 89 (99)
T cd04986 88 PE 89 (99)
T ss_pred CC
Confidence 53
No 373
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.88 E-value=0.0062 Score=50.55 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=44.6
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCC---EEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 652 QSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG---YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
..+.+.|.+. .|.|.+.|+|+++..... ........++. .+.|.+..-..+|...|+|.|+|..-.......+
T Consensus 16 ~~~va~C~s~-~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSA-NGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcC-CCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 3578999885 699999999999821110 00111111222 2467776655566668999999997544444333
No 374
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.87 E-value=0.0021 Score=48.21 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=42.7
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
.+.|.|.|.+ .-.|.|++ |..+.... ..+|.+-....+-.|.|.|.|+| ...+..|.|.
T Consensus 6 ~~~V~L~C~~------~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 6 EGKVFLKCNG------ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred CceEEEEecC------CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 4579999965 24599999 76665322 22799999999999999999988 2344555554
No 375
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.87 E-value=0.0062 Score=50.74 Aligned_cols=67 Identities=10% Similarity=0.230 Sum_probs=41.7
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc-E-EEEe-eCCeE---EEEEcccCcCCCeeEEEEEEecC
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR-F-RPIH-DFGYV---ALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r-~-~~~~-~~~~~---~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.++.++|.|.+.++-.+...|+|+|||.. ..+.. . .... ++.+. .|.|....-.....|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46779999999986556779999999998 43311 0 1122 33222 34444332222567999998864
No 376
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.84 E-value=0.0062 Score=50.53 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=46.8
Q ss_pred CceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCc---EEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG---YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
..+.++|.+. .|.|.+.|+|+++...... .......++. ...|.+.....+|.-.|+|+|.|..-.......++
T Consensus 16 ~~~va~C~s~-~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 16 PVPVAKCVSA-NGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred ccEEEEEEcC-CCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3578999875 7999999999998211110 0111111222 23577777677778899999999875554444443
No 377
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.81 E-value=0.0036 Score=52.10 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=45.0
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCC-CCCceEEEEeCCEEeecc-CcEEEEeeCCeE---EEEEcccCcCCC-eeEEEEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIG-HRFRPIHDFGYV---ALDIIDTIPEDS-GTYTCRA 127 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~-~p~~~v~W~~~g~~l~~~-~r~~~~~~~~~~---~L~I~~~~~~D~-G~Y~C~a 127 (808)
..|... .+..+..++|.|.+.++. .....|.|.++|.. ..- .......|+.+. .|.|..- .-.+ ..|+|++
T Consensus 9 ~pPs~e-~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~-~W~~g~~ytC~V 85 (99)
T cd04986 9 QRPALE-DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAE-EWNKGEPFACTV 85 (99)
T ss_pred ECcChH-HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHH-HhcCCCeEEEEE
Confidence 334443 566789999999999865 44679999999875 110 000111233222 4554422 2233 4599999
Q ss_pred EecCc
Q psy2145 128 VNLVG 132 (808)
Q Consensus 128 ~n~~g 132 (808)
.+...
T Consensus 86 ~H~~l 90 (99)
T cd04986 86 THPEG 90 (99)
T ss_pred ECCCc
Confidence 87643
No 378
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.80 E-value=0.0028 Score=47.59 Aligned_cols=60 Identities=17% Similarity=0.384 Sum_probs=42.4
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
.+.|.|+|.+ . -.|.|+| |..+.... ..+|.+.....+-.|.|.|.+++ ...+..|.|..
T Consensus 6 ~~~V~L~C~~--~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY 65 (69)
T cd07691 6 EGKVFLKCNG--A----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY 65 (69)
T ss_pred CceEEEEecC--C----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence 4579999964 1 4499999 66554322 11789999999999999999987 33445566654
No 379
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.78 E-value=0.001 Score=57.71 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=51.6
Q ss_pred ccCCceEEEEEEEee---CCCCCeEEEEEECCEEccC--CCcEEEE---------E--eCCEEEEEEccCCCCCcEEEEE
Q psy2145 648 IMEGQSAHYDCRVVP---VGDPTMRFEWFVNGVELKM--GSRFHVQ---------H--DFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 648 v~~G~~v~l~C~v~~---~g~P~p~i~W~~~g~~l~~--~~~~~~~---------~--~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
..-.++|.|.|.+.. ...+...|.|.++|+.+-. +...... . -.|.++|.+.....- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 456899999999831 1235778999999987742 1111110 1 134467888886655 999999
Q ss_pred EEEeCCcceEEEEEEEEEe
Q psy2145 712 KAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 712 ~A~N~~G~~~~s~~l~V~~ 730 (808)
.+.+...+.+..+.|.+..
T Consensus 103 eVt~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 103 EVTELSREGETTIELKYRV 121 (130)
T ss_dssp EEEETTEEEEEEEEEEE--
T ss_pred EEEecCCCceEEEEEEEEE
Confidence 9999999999999888753
No 380
>PHA02633 hypothetical protein; Provisional
Probab=96.68 E-value=0.0033 Score=45.88 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=33.2
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecC
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGS 145 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~ 145 (808)
.|.|.++..+|+|.|.|..+|..-..+.++.|+|...
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 6999999999999999999998888888899988643
No 381
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.54 E-value=0.011 Score=48.92 Aligned_cols=74 Identities=8% Similarity=0.005 Sum_probs=49.2
Q ss_pred cccCCCCcEEE-EEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeC---CeEEEEEcccCcCCCeeEEEEEEecCcceE
Q psy2145 60 ENLRERGHAHF-ECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDF---GYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135 (808)
Q Consensus 60 ~~v~~G~~v~l-~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 135 (808)
..+.+|+.+.+ .|.+.+ +.|.+.|.|+.+..... ........++ -.+.|.+.....+|.-.++|++.+..-...
T Consensus 11 ~~~~~g~~~~vA~C~sa~-gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~ 88 (97)
T cd07704 11 LLIDGGNGTTLAACCAAE-GRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQD 88 (97)
T ss_pred eEeecCcceeEEEEEccC-CccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCC
Confidence 37889999999 999987 89999999998643221 1110111111 112577766777777889999998754333
No 382
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.52 E-value=0.0028 Score=54.98 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=49.5
Q ss_pred cCCCCcEEEEEEEeeC---CCCCceEEEEeCCEEeec--cCcEEEE---------e--eCCeEEEEEcccCcCCCeeEEE
Q psy2145 62 LRERGHAHFECKLEPV---TDSNLKVEWFKNGRPVTI--GHRFRPI---------H--DFGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~---~~p~~~v~W~~~g~~l~~--~~r~~~~---------~--~~~~~~L~I~~~~~~D~G~Y~C 125 (808)
..=.++|.|.|.+... .-+...|.|.++|+.|-. +...... . ..|.++|.+.....- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 3457899999999742 124568999999988752 1111110 1 135567888876554 799999
Q ss_pred EEEecCcceEEEEEEEEe
Q psy2145 126 RAVNLVGFAEVQATLQCR 143 (808)
Q Consensus 126 ~a~n~~g~~~~~~~l~V~ 143 (808)
.+.....+.+..+.|...
T Consensus 103 eVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 103 EVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEETTEEEEEEEEEEE-
T ss_pred EEEecCCCceEEEEEEEE
Confidence 999887777777777663
No 383
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.49 E-value=0.0098 Score=48.82 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=43.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCC--ceEEEEeCCEEeeccCcEEEE-----eeCCeEEEEEcccCcCCCe-eEEEEEEec
Q psy2145 61 NLRERGHAHFECKLEPVTDSN--LKVEWFKNGRPVTIGHRFRPI-----HDFGYVALDIIDTIPEDSG-TYTCRAVNL 130 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~--~~v~W~~~g~~l~~~~r~~~~-----~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~ 130 (808)
.+.+|..+++.|.+.+ ..|. +.|.|+++...+.... +.-. .......++|... .+|.| .|+|+|.-.
T Consensus 11 ~l~~G~~vtv~C~v~~-v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPD-VYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecC-cccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 4579999999999986 3554 7899999776665332 2110 0112235555554 66666 899999643
No 384
>PHA02633 hypothetical protein; Provisional
Probab=96.45 E-value=0.011 Score=43.25 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=33.9
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
.|-|-++..+|+|.|.|+..|..-....++.|.|....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 59999999999999999999998888888888887653
No 385
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.45 E-value=0.016 Score=47.94 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=47.3
Q ss_pred cccCCCceEE-EEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcE----EEEEECCCCCCCCEEEEEEEEeCCe
Q psy2145 515 AVEEGKNAHF-SCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY----VAMDLSHVRAEDEGIYICKATNALG 586 (808)
Q Consensus 515 ~v~~G~~v~l-~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G 586 (808)
.+.+|+.+.+ .|.+. .|.|.+.|+|+.+...... .-.....+|. +.|.+...+.+|.-.++|.+.+..-
T Consensus 12 ~~~~g~~~~vA~C~sa-~gkPaa~IsW~~~~~G~~~--~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 12 LIDGGNGTTLAACCAA-EGRPAADVTWETNVYGTSE--SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred EeecCcceeEEEEEcc-CCccCCEeEEeCCCCCccc--eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 4678999999 99976 8999999999987432211 0011111121 2577777777788899999999754
No 386
>PHA02982 hypothetical protein; Provisional
Probab=96.20 E-value=0.1 Score=48.38 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=59.9
Q ss_pred ceEeecCCeEEEEEEEeecCCCccEEEEEECCE-ecc----------C--------CCcEEEEeeCcEEEEEEccCCCCC
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGV-PIQ----------A--------SNRVSTMHDFGYVALNFKYTYPED 384 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~-~l~----------~--------~~~~~~~~~~~~~~L~I~~v~~~d 384 (808)
++....++++.|.|.. +.++.-.+..|+++.. -|. . ...+.+.-++..++|+|.++..+.
T Consensus 33 dv~a~vd~~V~L~C~~-~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLF-KDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhccCCCcEEEEecC-CCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 3445679999999995 5666677899998542 222 0 123345556778899999999999
Q ss_pred CeEEEEEEEcCCcceEE-EEEEEEE
Q psy2145 385 SGTYTCRAVNELGEAVT-SSTLFVE 408 (808)
Q Consensus 385 ~G~Y~C~a~n~~g~~~~-~~~l~V~ 408 (808)
.|-|+|+|....+..+. ..-|.|+
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~ 136 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQ 136 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEe
Confidence 99999999986655443 4555553
No 387
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.15 E-value=0.025 Score=46.54 Aligned_cols=66 Identities=24% Similarity=0.410 Sum_probs=42.5
Q ss_pred ccCCCceEEEEEEeeCCCCC--cEEEEEECCEecCCCCCeEE-----EeeCcEEEEEECCCCCCCCE-EEEEEEEeC
Q psy2145 516 VEEGKNAHFSCRLIPVGDPT--LKVEWFRNEKPLEDSSRITT-----KHDFGYVAMDLSHVRAEDEG-IYICKATNA 584 (808)
Q Consensus 516 v~~G~~v~l~C~v~~~g~P~--~~v~W~k~g~~l~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~ 584 (808)
+.+|..++++|.+. ...|. +.|.|++....+.... +.- ........+++... ++|.| .|+|.|.-.
T Consensus 12 l~~G~~vtv~C~v~-~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVP-DVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEec-CcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 57899999999994 56666 7799998776655332 111 00111234555554 66666 999998654
No 388
>PHA03042 CD47-like protein; Provisional
Probab=95.72 E-value=0.051 Score=52.81 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=52.2
Q ss_pred cCCceEEEEEEEeeCCC------CCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 649 MEGQSAHYDCRVVPVGD------PTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g~------P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
.-.+++.+.|.+ .. -...|.|.+||+.+-..+.- ..++|.+.... .=.|.|+|+|.+...+...
T Consensus 29 ~CN~TV~IpC~v---~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 29 TCNKTIVIVCNL---NLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFSK-NLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred ecCceEEEEeec---CChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEeccc-cCCCceeEEEeecccCccE
Confidence 358899999998 34 36789999999988754332 12467666543 4499999999998777777
Q ss_pred EEEEEEE
Q psy2145 723 STSLKVK 729 (808)
Q Consensus 723 s~~l~V~ 729 (808)
...|+-.
T Consensus 99 ~IeLk~~ 105 (286)
T PHA03042 99 TIELQYV 105 (286)
T ss_pred EEEEEEE
Confidence 7777665
No 389
>KOG4597|consensus
Probab=95.67 E-value=0.021 Score=59.41 Aligned_cols=82 Identities=18% Similarity=0.090 Sum_probs=62.3
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE---CCEEccC--CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV---NGVELKM--GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~---~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
..+..|+++.++|-+ .|.|.+.|.|-+ |+..+.. +..+.-..--....|.|-+....|+|.|+|.|.|.+|..
T Consensus 206 w~vg~wetcS~tCg~--~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGV--QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred hhcccchhhcccccc--cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 457889999999999 799999999975 5543322 111110001124579999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2145 721 VSSTSLKVK 729 (808)
Q Consensus 721 ~~s~~l~V~ 729 (808)
..++.+.+.
T Consensus 284 ~rdv~c~s~ 292 (560)
T KOG4597|consen 284 RRDVPCSSV 292 (560)
T ss_pred eccceeeee
Confidence 999988765
No 390
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.66 E-value=3.2 Score=42.90 Aligned_cols=161 Identities=14% Similarity=0.217 Sum_probs=95.8
Q ss_pred cccCCCceEEEEEEeeCCCCCcE-EEEEECCEecCC-----------------CCCeEEEee------CcEEEEEECCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKPLED-----------------SSRITTKHD------FGYVAMDLSHVR 570 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~l~~-----------------~~~~~~~~~------~~~~~L~I~~v~ 570 (808)
.+..|..|.|+|...--|+.... +.|+--|-++.+ ...+.+... -..++|+|.+++
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 57779999999998655555544 899876644431 122333321 223589999999
Q ss_pred CCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccC
Q psy2145 571 AEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 650 (808)
-+.+|-|+|+|....-..++..-|.|...- |.. ...+
T Consensus 355 I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V-------------------------------------~f~------W~~e 391 (500)
T PHA02914 355 INNAGCYEAQAFMGKFKEECRHCFKVADHV-------------------------------------FFK------WNTE 391 (500)
T ss_pred EEcCCceEEEEecCcchhhhhhheEeccEE-------------------------------------EEE------EEec
Confidence 999999999998876666665555554311 111 1224
Q ss_pred Cce-EEEEEEEeeCCCCCeEEEEEECCEEccCCCc-------EEEEEeCCEEEEEEccCCCCC-cEEEEEEEEeCCc
Q psy2145 651 GQS-AHYDCRVVPVGDPTMRFEWFVNGVELKMGSR-------FHVQHDFGYVTLDITKCVPAD-SGVYMCKAINRAG 718 (808)
Q Consensus 651 G~~-v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~-------~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~A~N~~G 718 (808)
|.. -...|-+...-..++.|.|.-||........ ..+...-..+.+.|.+-...| --.-.|..--..|
T Consensus 392 ~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~ 468 (500)
T PHA02914 392 GDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQG 468 (500)
T ss_pred cCceEEEEEEEEecccCCceeEEEEccEEecCeecCcccccccccccccceEEEEEecccCccccccceEEEecCCC
Confidence 443 4578888433345778999999876542111 111111224566776665555 3345566443333
No 391
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.67 E-value=0.04 Score=53.44 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=41.7
Q ss_pred CCeEEEEEE-CCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 666 PTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 666 P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
..|.+.|.- ||+.|...+++.++..| .|.+.+....++|.|+|..+=+.
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 478899997 78888888888887765 69999999999999999987654
No 392
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.47 E-value=0.051 Score=52.70 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=37.7
Q ss_pred CCceEEEEe-CCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 80 SNLKVEWFK-NGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 80 p~~~v~W~~-~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.+|.+.|.. +|+.|....++.+...| .|.+.+...++||.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 356899998 56666655566655444 59999999999999999998654
No 393
>KOG4597|consensus
Probab=94.37 E-value=0.052 Score=56.66 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=67.4
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee---CCEEccC--CCceEEEecCceEEEEEccCCCCCcEEEEE
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH---NNVPIKS--GSRFTETNNFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~---~g~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
|.+...+....+-.|+++.++|-+ .|.+.+.|+|.+ |+..+.. ...+..-.-.....|.|-+....|+|.|+|
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~--~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tC 274 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGV--QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTC 274 (560)
T ss_pred cccccCcchhhcccchhhcccccc--cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceee
Confidence 455556677788999999999998 689999999976 4433321 111110011133479999999999999999
Q ss_pred EEEeCceeEEEEEEEEEee
Q psy2145 259 RAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 259 ~a~n~~g~~~~~~~l~V~~ 277 (808)
.|.|..|.....+.+.+..
T Consensus 275 s~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 275 SARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred ccccccceeeccceeeeec
Confidence 9999999888888777653
No 394
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=94.25 E-value=3.6 Score=39.31 Aligned_cols=51 Identities=16% Similarity=0.352 Sum_probs=28.6
Q ss_pred CCceEEEEeCCEEeeccC---cEEEEeeCCe---EEEEEc-ccCcCCCeeEEEEEEec
Q psy2145 80 SNLKVEWFKNGRPVTIGH---RFRPIHDFGY---VALDII-DTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 80 p~~~v~W~~~g~~l~~~~---r~~~~~~~~~---~~L~I~-~~~~~D~G~Y~C~a~n~ 130 (808)
-...+.||.||.++..+. +.....++.. ++|.+. +...+-.=..+|.+.-.
T Consensus 5 ~S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~ 62 (211)
T PF02124_consen 5 RSVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWY 62 (211)
T ss_pred CcEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEc
Confidence 345899999999887432 2222334312 356662 22333335689998743
No 395
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=94.01 E-value=3.2 Score=39.61 Aligned_cols=56 Identities=16% Similarity=0.430 Sum_probs=30.4
Q ss_pred EEEEEeeCCCC--CcEEEEEECCEecCCCCCeEEEe----eCcEEEEEECCCC--CCCCE--EEEEEEEe
Q psy2145 524 FSCRLIPVGDP--TLKVEWFRNEKPLEDSSRITTKH----DFGYVAMDLSHVR--AEDEG--IYICKATN 583 (808)
Q Consensus 524 l~C~v~~~g~P--~~~v~W~k~g~~l~~~~~~~~~~----~~~~~~L~I~~v~--~~D~G--~Y~C~a~N 583 (808)
..|.+ ...| ...+.|+-++............. ..| ...|.+.. .+..| +|+|.+.-
T Consensus 94 AVC~A--~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pg--lvnirs~~pls~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 94 AVCTA--RCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPG--LVNIRSRRPLSDEDGPVEYTCRLIG 159 (211)
T ss_pred EEEEc--ceeeCCCeEEEEEECCccCCCCCceeecCcccCCcc--eeEeecccCCCccCCceeEEEEEee
Confidence 34877 5566 36899998887643333222221 112 23333322 33456 99999853
No 396
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.00 E-value=0.36 Score=40.04 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=46.0
Q ss_pred EEEEEeeCCCCCeE--EEEEECCEEccC---CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-EEEEEE
Q psy2145 656 YDCRVVPVGDPTMR--FEWFVNGVELKM---GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKV 728 (808)
Q Consensus 656 l~C~v~~~g~P~p~--i~W~~~g~~l~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s~~l~V 728 (808)
+...+...+.+... ++|..+..+... ++++.+..++. +|.|+.++..|+|.|.-.++|..|...+ .++|.|
T Consensus 30 v~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 30 VQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred EEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 44444436777775 455433333332 35666666554 8999999999999999999999998743 345544
No 397
>PHA03283 envelope glycoprotein E; Provisional
Probab=93.97 E-value=1.2 Score=47.84 Aligned_cols=96 Identities=13% Similarity=0.177 Sum_probs=56.2
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeec
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL 642 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~ 642 (808)
.|.|.+++.+++|.|+--..|..+.....+.|.|..++.- ....|.-.. -.........|....
T Consensus 135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~--~~~~Pp~~~--------------pv~P~~h~a~f~v~n 198 (542)
T PHA03283 135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQ--PQTPPAPLV--------------PQVPARHHTDFHVRG 198 (542)
T ss_pred eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcC--CCCCCCCcc--------------ccCCccCCceEEEec
Confidence 6999999999999999999998885555566666542221 000000000 000011223444443
Q ss_pred CCCccccCCceEEEEEEEeeC-CCC--CeEEEEEE
Q psy2145 643 TGTSEIMEGQSAHYDCRVVPV-GDP--TMRFEWFV 674 (808)
Q Consensus 643 ~~~~~v~~G~~v~l~C~v~~~-g~P--~p~i~W~~ 674 (808)
=.......|+++.+.-..... .++ ...|.||+
T Consensus 199 YhS~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 199 YHSRVYSPGDSFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred ceeEEecCCCceeEeEEEeeccCCCCceEEEEEEE
Confidence 333456789998887776532 233 45899986
No 398
>PHA03042 CD47-like protein; Provisional
Probab=93.45 E-value=0.38 Score=47.01 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=47.4
Q ss_pred CCcEEEEEEEeeC---CCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEE
Q psy2145 65 RGHAHFECKLEPV---TDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141 (808)
Q Consensus 65 G~~v~l~C~~~~~---~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 141 (808)
.+++.+.|.+... +.....+.|.++|+.+-..+.. ...+|.+... ..=.|+|+|.|.+...+......|.
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEecc-ccCCCceeEEEeecccCccEEEEEE
Confidence 5889999999741 1135689999999988643222 1134555443 2347999999998766556666655
Q ss_pred Ee
Q psy2145 142 CR 143 (808)
Q Consensus 142 V~ 143 (808)
-.
T Consensus 104 ~~ 105 (286)
T PHA03042 104 YV 105 (286)
T ss_pred EE
Confidence 43
No 399
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.16 E-value=0.56 Score=38.32 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=47.9
Q ss_pred ecCceeecCCCeEEEEEEEeecC---CCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVS---DNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~---~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
.++...+..|++++..|.+.... .....|.|..|+..+ ++.++...++. ..++++.+.....+-.|.|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~~-~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVINDT-VSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEESTT-EEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCCe-EEEEEEccCCCCCceEEEEEE
Confidence 44556788999999999996322 246689999999955 45667766654 367888888777777888874
No 400
>KOG1026|consensus
Probab=92.68 E-value=0.051 Score=61.57 Aligned_cols=291 Identities=14% Similarity=0.057 Sum_probs=153.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEee-CCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHD-FGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQAT 139 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 139 (808)
...-++...+.|.+.+ .+...+.|+++......+-+...... -....|.+.+....+.|.+.|.+.+..-.......
T Consensus 63 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 140 (774)
T KOG1026|consen 63 TEIFIENGQLLCIVSG--NDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTEL 140 (774)
T ss_pred HHHHHhhhhhcccccC--CCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccchh
Confidence 5667888889999985 33338999998877665433321110 11124777777778888888888775433222222
Q ss_pred EEEecCCCccccccccccceeeeeecccccccc---ccccc--------cccCCCCeEEeecCceeecCCCeEEEEEEEe
Q psy2145 140 LQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR---GEYIE--------ETTTQAPIFTTSLKNCEIKEGQRAHFECRLI 208 (808)
Q Consensus 140 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~ 208 (808)
+.+. .+. ....+...++..++-.....|.. ..+.. .....-+..........+..|..+++.|..
T Consensus 141 ~~~~-~~~--~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~- 216 (774)
T KOG1026|consen 141 SLVG-NPF--TCSCSIRWLDRYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCSQ- 216 (774)
T ss_pred hhcc-CCC--CcchhhhHHhhhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeeec-
Confidence 2222 111 11111111111111111111111 11110 000111111111124567889999999999
Q ss_pred ecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCccccccccc
Q psy2145 209 PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288 (808)
Q Consensus 209 ~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~ 288 (808)
.+.|.+.+.|+.++.............. .. ...+.+ ++|.++|..|....++.+.+..++..
T Consensus 217 -~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~-~~~~~~--------~~c~~E~~~~~~~~~v~~~~~~p~~~------- 278 (774)
T KOG1026|consen 217 -AGIPVPCHYWFPNCLASSNTNQTSSLCR-SE-CEVLEN--------DLCIAENAVARSNPSILLVVDLPKAE------- 278 (774)
T ss_pred -ccCCCcceeeecccccccCCCccccccc-cc-ceeeec--------hhhHHHHhhhhcCceeeeEEeccccc-------
Confidence 6899999999998776654332221111 11 111211 99999999998887777777643211
Q ss_pred chhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEe-ecCCCccEEEEEECCEeccCCCcEEEE
Q psy2145 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI-PVGDSKLKVTWLRNGVPIQASNRVSTM 367 (808)
Q Consensus 289 ~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~-~~g~p~~~v~W~~~g~~l~~~~~~~~~ 367 (808)
...... .++ +=.|... ..++|.+...|..+|..+.........
T Consensus 279 ------------------------------~~~~~~----~~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t 322 (774)
T KOG1026|consen 279 ------------------------------VLLCSP----LSD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVT 322 (774)
T ss_pred ------------------------------ccCCCC----ccc--cCceeeeeccCCCCCceeeeecCccceEecccccc
Confidence 100000 000 1122221 035777888898888765433222111
Q ss_pred eeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy2145 368 HDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411 (808)
Q Consensus 368 ~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 411 (808)
..+..--+....-...+.|.|+|.+.|..|.........+...|
T Consensus 323 ~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 323 KSGKEQCLPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cccCcCCcccCcCcccccCcceeeecccCccccccCcCccccCC
Confidence 11100112233335678999999999999988877666666555
No 401
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.54 E-value=0.27 Score=40.78 Aligned_cols=71 Identities=17% Similarity=0.389 Sum_probs=44.5
Q ss_pred ceEEEEEEeeCCCCCcE--EEEEECCEecCC---CCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 521 NAHFSCRLIPVGDPTLK--VEWFRNEKPLED---SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 521 ~v~l~C~v~~~g~P~~~--v~W~k~g~~l~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
.+.-.-.. .+.+... ++|..+..+... +.++....++. .|.|+.++..|+|.|..+++|..|.. ....+.
T Consensus 29 sv~WK~~l--~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~Fq 103 (108)
T PF11465_consen 29 SVQWKMQL--PSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQ 103 (108)
T ss_dssp EEEEEEEE--TSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCE-EEEEEE
T ss_pred EEEEEEEc--ccCCceEEEEEEcCCCcccccccccceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcE-EEEEEE
Confidence 34444443 5666665 566544433332 24555554444 89999999999999999999999987 444444
Q ss_pred E
Q psy2145 596 I 596 (808)
Q Consensus 596 V 596 (808)
|
T Consensus 104 V 104 (108)
T PF11465_consen 104 V 104 (108)
T ss_dssp E
T ss_pred E
Confidence 4
No 402
>PHA03283 envelope glycoprotein E; Provisional
Probab=92.52 E-value=6.3 Score=42.63 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=55.1
Q ss_pred EEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccc-cccccCCCCeE
Q psy2145 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEY-IEETTTQAPIF 186 (808)
Q Consensus 108 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~ 186 (808)
..|.|.+++.+++|.|+-...+..+.......|+|..+....... .... ..........|
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~-------------------Pp~~~pv~P~~h~a~f 194 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTP-------------------PAPLVPQVPARHHTDF 194 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCC-------------------CCCccccCCccCCceE
Confidence 369999999999999999999877644455556665422110000 0000 00001223344
Q ss_pred Eeec-CceeecCCCeEEEEEEEeecC-CC--CeEEEEee
Q psy2145 187 TTSL-KNCEIKEGQRAHFECRLIPVS-DN--TMKVEWFH 221 (808)
Q Consensus 187 ~~~~-~~~~v~~G~~v~L~C~~~~~~-~p--~~~v~W~~ 221 (808)
.... .......|+++.+.-.....- .+ .+.|.||.
T Consensus 195 ~v~nYhS~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 195 HVRGYHSRVYSPGDSFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EEecceeEEecCCCceeEeEEEeeccCCCCceEEEEEEE
Confidence 4433 345677899988877664211 22 46899986
No 403
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.51 E-value=0.47 Score=38.76 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=47.8
Q ss_pred CCCccccCCCCcEEEEEEEeeCC---CCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 56 PKSIENLRERGHAHFECKLEPVT---DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~---~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
|+.. .+..|++++..|.+...- .....|.|..|+. ..++++++...+.. +.++|.+.....+-.|.|..
T Consensus 10 p~~p-vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~-~iP~~qy~~in~~~-SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 10 PPSP-VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE-KIPGSQYRVINDTV-SSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp CSSS-EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC-ESTCGCEEEESTTE-EEEEESS--SSEEEEEEEEE
T ss_pred cCCC-EEeCCCCEEEEEEEECCCCCCcccceEEEEECCE-ECChhHcceeCCeE-EEEEEccCCCCCceEEEEEE
Confidence 3444 688999999999998521 2556899999999 55567777666554 68888888777777788874
No 404
>PHA03282 envelope glycoprotein E; Provisional
Probab=92.36 E-value=11 Score=40.17 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=24.8
Q ss_pred CEEEEEEccCCCCCcEEEEEEEE-eCCcceEE
Q psy2145 692 GYVTLDITKCVPADSGVYMCKAI-NRAGEAVS 722 (808)
Q Consensus 692 ~~~~L~I~~v~~~D~G~Y~C~A~-N~~G~~~~ 722 (808)
+.+.|.+.++...++|.|.|++. |.+=.+-.
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW~ 362 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVNGHVHAWG 362 (540)
T ss_pred CccceEecCCCcccCceEEEEEEECCeeeeeE
Confidence 34589999999999999999985 76655433
No 405
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.35 E-value=0.82 Score=36.47 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=35.8
Q ss_pred CeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE-EeCCcceEEEEEEEE
Q psy2145 667 TMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA-INRAGEAVSSTSLKV 728 (808)
Q Consensus 667 ~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~N~~G~~~~s~~l~V 728 (808)
.+++.|+-.|..+..... .+.......+|+|.++|.| .|..-.-.+...|.|
T Consensus 26 ~~~~~l~~~~~k~~~~~~----------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETKK----------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEEESS----------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccccccce----------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 567777776655533222 4566677889999999999 666666666666655
No 406
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.01 E-value=0.43 Score=48.93 Aligned_cols=64 Identities=11% Similarity=0.241 Sum_probs=38.2
Q ss_pred cEEEEEEEeeCCCCCceEEEEeC---------C---EEeeccCc-----------EEEEeeCCeEEE-EEcccCcCCCee
Q psy2145 67 HAHFECKLEPVTDSNLKVEWFKN---------G---RPVTIGHR-----------FRPIHDFGYVAL-DIIDTIPEDSGT 122 (808)
Q Consensus 67 ~v~l~C~~~~~~~p~~~v~W~~~---------g---~~l~~~~r-----------~~~~~~~~~~~L-~I~~~~~~D~G~ 122 (808)
.++|+|.+.++-.....+.|.|| | ..+..+.. .....|++.+.+ .-..+..+|...
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v~~~~~~~ 295 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRVPTDMSNQ 295 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEeCCCCCCC
Confidence 57999999986455678999999 5 22222111 111123223322 112455667778
Q ss_pred EEEEEEec
Q psy2145 123 YTCRAVNL 130 (808)
Q Consensus 123 Y~C~a~n~ 130 (808)
|+|.+.+.
T Consensus 296 Y~C~V~Hs 303 (338)
T PHA02865 296 IVCVVFHS 303 (338)
T ss_pred cEEEEEeC
Confidence 99999875
No 407
>KOG1026|consensus
Probab=91.81 E-value=0.23 Score=56.52 Aligned_cols=164 Identities=17% Similarity=0.228 Sum_probs=100.2
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
.+..|..+++.|.+ .+.|.+.+.|+.++............-. .. ...+.+ ++|.++|..|....++.+
T Consensus 203 ~v~~~~~~~~~c~~--~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~-~~~~~~--------~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQ--AGIPVPCHYWFPNCLASSNTNQTSSLCR-SE-CEVLEN--------DLCIAENAVARSNPSILL 270 (774)
T ss_pred hhcccchheeeeec--ccCCCcceeeecccccccCCCccccccc-cc-ceeeec--------hhhHHHHhhhhcCceeee
Confidence 57889999999999 8999999999998766554332111110 11 111211 999999999998888877
Q ss_pred EEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEE
Q psy2145 595 KIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV 674 (808)
Q Consensus 595 ~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~ 674 (808)
.+..+.-.. .+.. .......+ +.--+ .++|.+.-.|..
T Consensus 271 ~~~~p~~~~-------------------------------------~~~~--~~~~~~~C-~~~~~--~~~~~~~~~~~~ 308 (774)
T KOG1026|consen 271 VVDLPKAEV-------------------------------------LLCS--PLSDHHNC-IPIGI--TANPGPALHWCY 308 (774)
T ss_pred EEecccccc-------------------------------------cCCC--CccccCce-eeeec--cCCCCCceeeee
Confidence 776532211 0000 01111111 11112 467888899999
Q ss_pred CCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 675 NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 675 ~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
||..+.-.+....+..+...-+....-...+.|.|+|.+.|..|.........+...|
T Consensus 309 ~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 309 NGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cCccceEecccccccccCcCCcccCcCcccccCcceeeecccCccccccCcCccccCC
Confidence 8876543222211111100123333335678999999999999999888888877666
No 408
>PHA03282 envelope glycoprotein E; Provisional
Probab=91.48 E-value=10 Score=40.31 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEccCCCCCcEEEEEEEEe
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
+.|.+.|+..+++|.|.|++.-
T Consensus 333 VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 333 VNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred cceEecCCCcccCceEEEEEEE
Confidence 4799999999999999999964
No 409
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=90.76 E-value=35 Score=39.01 Aligned_cols=143 Identities=12% Similarity=0.181 Sum_probs=75.6
Q ss_pred ecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEe--Cce----eEE
Q psy2145 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVN--ALG----QAV 268 (808)
Q Consensus 195 v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--~~g----~~~ 268 (808)
...|+.+.|.+.+. |.-...+...-+|..+... .+. +-..-+-.++.+|.|...+.- ... .+.
T Consensus 302 ql~g~~I~ika~a~--GG~~llYrf~I~G~~~e~~-~Y~--------~~n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~ 370 (667)
T PRK14081 302 QLTDTDIELKAVAE--GGKELLYRFIIKGKESEDS-GYI--------RNNIYTWKPKIAGKYSITLWVKDISSKGEYEDK 370 (667)
T ss_pred eecCceEEEEEEec--CCCceEEEEEECCcEEeec-ccc--------ccceEEEeeCCCceEEEEEEEEcCcCcccccce
Confidence 45799999999995 4445556555455544221 111 111222346679999877642 111 234
Q ss_pred EEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCe-ec--cCCCceEeecCCeEEEEEEEeecCCC
Q psy2145 269 TSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV-FT--QPMRDIHVAENQAAHFEARLIPVGDS 345 (808)
Q Consensus 269 ~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~-~~--~~~~~~~v~~G~~~~l~C~~~~~g~p 345 (808)
..+.+.+...+ ..|. +. ..+....+..|+++.+.|.+ .|.-
T Consensus 371 ~~v~f~i~~~~----------------------------------~~p~~I~~vl~d~~~~~lvG~~i~i~v~a--~gg~ 414 (667)
T PRK14081 371 SSIDYTIEEKS----------------------------------KEPIKIEDVILDKGKHILKGEEIKIRVIA--EGGT 414 (667)
T ss_pred EEEEEEEcccC----------------------------------CCCeEEEEEEECCCCceEeCCeEEEEEEe--cCCC
Confidence 44555554321 1222 11 11223456679999999998 4443
Q ss_pred ccEEE--EEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEE
Q psy2145 346 KLKVT--WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAV 393 (808)
Q Consensus 346 ~~~v~--W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 393 (808)
...+. =.+||..+...+- . ... .+.+ .+.-+|.|+..+.
T Consensus 415 ~~lY~f~ik~ng~~ve~~~Y---~-~~~--~~~f---~P~~~G~Y~IeV~ 455 (667)
T PRK14081 415 NLRYSFIIKKDGKEEEKIDY---G-KNN--WVNF---IPEEKGNYELEVR 455 (667)
T ss_pred eEEEEEEEEECCEEEEEeec---c-ccc--EEEE---EECCCeeEEEEEE
Confidence 44433 2347776653210 0 001 2332 3577899988664
No 410
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=90.08 E-value=1.2 Score=45.90 Aligned_cols=38 Identities=8% Similarity=0.335 Sum_probs=26.8
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN 222 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~ 222 (808)
..||.+.+.-.. . .+ .++|.|.+.+.-.....+.|.||
T Consensus 201 ~vpP~V~Vt~k~--~-~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 201 PVTPTVKVTGEE--L-GD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCCceEEeccc--C-CC-CceEEEEEEeEeCCccEEEEEec
Confidence 457776654331 1 22 68999999876666789999999
No 411
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=89.45 E-value=2.3 Score=33.90 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=34.6
Q ss_pred CcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE-EeCCeeEEEEEEEEEE
Q psy2145 535 TLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA-TNALGEAVTTASMKIK 597 (808)
Q Consensus 535 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~~~~s~~l~V~ 597 (808)
.+.+.|+-.+..+.... . .+.......+|+|.++|.| .+..-.......|.|.
T Consensus 26 ~~~~~l~~~~~k~~~~~--------~--~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v~ 79 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETK--------K--LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILVL 79 (80)
T ss_dssp CEEEEEECSSCEEEEES--------S--EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEEE
T ss_pred ChhheeeccCccccccc--------e--EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEcC
Confidence 45677776554432221 1 4566677889999999999 7766666666666553
No 412
>PHA03286 envelope glycoprotein E; Provisional
Probab=89.27 E-value=33 Score=36.54 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=54.0
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEE-EEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEee
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s-~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~ 641 (808)
.|.|.+++..++|.|+--..|+.|....+ +-|.|.....-. .|. .-.+. .....+..|...
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r----~p~-------~~~pv-------~p~~~~~~f~l~ 189 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRAR----DPT-------MNIPI-------TPPSTRVDLSLK 189 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCC----CCC-------cccCC-------CCcccceEEEEe
Confidence 69999999999999999999987765554 455554331100 000 00000 000112344444
Q ss_pred cCCCccccCCceEEEEEEEeeCCCC---CeEEEEEE
Q psy2145 642 LTGTSEIMEGQSAHYDCRVVPVGDP---TMRFEWFV 674 (808)
Q Consensus 642 ~~~~~~v~~G~~v~l~C~v~~~g~P---~p~i~W~~ 674 (808)
.........|+++.+.-.....-+. ...|.|++
T Consensus 190 ny~S~lF~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 190 NFKAFLYNVGDTVDASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred cccceEecCCCeEEEEEEEeecccCCCceEEEEEEE
Confidence 4444457789999877666411122 45899986
No 413
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=88.04 E-value=5.1 Score=32.78 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=36.9
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 653 ~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
...|.+++ .|. ...+.||.||+.+...... ..+.+. ....|.|+..+....|...+
T Consensus 31 ~~~l~l~a--~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKA--AGG-RGPVYWFVDGEPLGTTQPG--------HQLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEE--eCC-CCcEEEEECCEEcccCCCC--------CeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 44445555 344 4499999999999443221 123332 25689999999999998765
No 414
>PHA03281 envelope glycoprotein E; Provisional
Probab=87.97 E-value=10 Score=41.13 Aligned_cols=92 Identities=17% Similarity=0.272 Sum_probs=54.3
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEE-EEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEee
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~ 641 (808)
.|.|.+++..++|.|+--.....|.... .+-|.|+..+...+.. +. .........|...
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~-------------------p~-Vtpk~hga~F~vk 358 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDL-------------------PA-VTPKPKGAEFHMW 358 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCC-------------------CC-ccccccCceEEEe
Confidence 6999999999999999888866665444 4445554432100000 00 0001112335444
Q ss_pred cCCCccccCCceEEEEEEEeeCC-CC--CeEEEEEE
Q psy2145 642 LTGTSEIMEGQSAHYDCRVVPVG-DP--TMRFEWFV 674 (808)
Q Consensus 642 ~~~~~~v~~G~~v~l~C~v~~~g-~P--~p~i~W~~ 674 (808)
.-.......|+++.|...+.+.- +. ...|.||+
T Consensus 359 nYhShVF~pGDTFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 359 HYHSHVFSVGDTFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred ccceeEecCCCeeEEEEEEeeeccCCCceeEEEEEE
Confidence 33334567899999988886442 22 45899986
No 415
>PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with IPR007110 from INTERPRO.
Probab=86.89 E-value=0.23 Score=30.26 Aligned_cols=22 Identities=64% Similarity=1.001 Sum_probs=19.1
Q ss_pred ccccccCcccccccccccCCCC
Q psy2145 602 LQLETQHPEGLKKIQELEQPAS 623 (808)
Q Consensus 602 i~~~~~~p~~~~~i~~l~~~~~ 623 (808)
|.++++||+++.+|+.||+...
T Consensus 1 I~~dTQhp~~lekIq~LE~~~~ 22 (28)
T PF06582_consen 1 IILDTQHPESLEKIQELEDPSR 22 (28)
T ss_pred CcccccCHHHHHHHHHHHcccc
Confidence 4578999999999999998765
No 416
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=86.56 E-value=0.66 Score=50.40 Aligned_cols=95 Identities=16% Similarity=0.265 Sum_probs=17.5
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEE-EEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEee
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s-~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~ 641 (808)
.|.|.+++.+|+|.|+-...|..|..... +.|.|....... ....|. ..+ ........|...
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~-~~p~p~--~p~--------------~p~~~~~~~~~~ 152 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDP-RTPPPH--HPI--------------VPHRHGATFHLK 152 (439)
T ss_dssp -------------------------------------------------------------------------SEEEEEE
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCC-CCCCCC--CCC--------------CCcccccEEEEe
Confidence 59999999999999999999887765544 444444422210 000000 000 000011234433
Q ss_pred cCCCccccCCceEEEEEEEeeCCCC----CeEEEEEE
Q psy2145 642 LTGTSEIMEGQSAHYDCRVVPVGDP----TMRFEWFV 674 (808)
Q Consensus 642 ~~~~~~v~~G~~v~l~C~v~~~g~P----~p~i~W~~ 674 (808)
.........|+++.|.-.+.+.-.. ...|.||+
T Consensus 153 ~~~s~vf~~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 153 NYHSHVFSPGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp --SEEE--TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred ccceEEecCCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 3333457889998888877543222 35899986
No 417
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=86.54 E-value=2.9 Score=45.53 Aligned_cols=93 Identities=19% Similarity=0.324 Sum_probs=16.7
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEE-EEEEEEecCCCcc-ccccccccceeeeeeccccccccccccccccCCCCeE
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEV-QATLQCRGSAGIL-TSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 186 (808)
.|.|.+++.+|+|.|+-...+..+.... .+.|.|....... .... ............|
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p--------------------~~p~~p~~~~~~~ 149 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPP--------------------HHPIVPHRHGATF 149 (439)
T ss_dssp ----------------------------------------------------------------------------SEEE
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCC--------------------CCCCCCcccccEE
Confidence 5999999999999999999877655433 3455555432210 0000 0000001112233
Q ss_pred Ee-ecCceeecCCCeEEEEEEEeecCC--C--CeEEEEee
Q psy2145 187 TT-SLKNCEIKEGQRAHFECRLIPVSD--N--TMKVEWFH 221 (808)
Q Consensus 187 ~~-~~~~~~v~~G~~v~L~C~~~~~~~--p--~~~v~W~~ 221 (808)
.. .........|+++.|.-.+..... + .+.|.||.
T Consensus 150 ~~~~~~s~vf~~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 150 HLKNYHSHVFSPGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp EEE--SEEE--TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred EEeccceEEecCCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 33 334566789999887776643222 2 46899986
No 418
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=86.01 E-value=8.7 Score=31.41 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=46.5
Q ss_pred cCCCeeeecCCCccc-ccCC--CceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEE
Q psy2145 501 KQRPVFTKPLQNIDA-VEEG--KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~-v~~G--~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 577 (808)
..+|.|+.|...... +..+ +...|.+.+ .+. ...+.||-||+.+...... . .+.+.. ...|.|
T Consensus 8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a--~~~-~~~~~W~vdg~~~g~~~~~------~--~~~~~~---~~~G~h 73 (89)
T PF06832_consen 8 GSPLRITSPPDGAVLALDPGIPERQPLVLKA--AGG-RGPVYWFVDGEPLGTTQPG------H--QLFWQP---DRPGEH 73 (89)
T ss_pred CCCCEEEecCCCCEEEeCCCCCccceEEEEE--eCC-CCcEEEEECCEEcccCCCC------C--eEEeCC---CCCeeE
Confidence 346777777665532 2222 244455555 334 4489999999999443321 1 233332 467999
Q ss_pred EEEEEeCCeeEEE
Q psy2145 578 ICKATNALGEAVT 590 (808)
Q Consensus 578 ~C~a~N~~G~~~~ 590 (808)
+..+....|...+
T Consensus 74 ~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 74 TLTVVDAQGRSAS 86 (89)
T ss_pred EEEEEcCCCCEEE
Confidence 9999999887665
No 419
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=84.98 E-value=79 Score=36.31 Aligned_cols=164 Identities=14% Similarity=0.191 Sum_probs=88.4
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEE-E-EECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE--eCCe----
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVE-W-FRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT--NALG---- 586 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~-W-~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~--N~~G---- 586 (808)
.+..|+++.+.|.+. |.-...+. | .+||..+.... +. ... .+.+ .+.-+|.|+..+. |...
T Consensus 397 ~~lvG~~i~i~v~a~--gg~~~lY~f~ik~ng~~ve~~~-Y~---~~~--~~~f---~P~~~G~Y~IeV~vKdk~S~~~y 465 (667)
T PRK14081 397 HILKGEEIKIRVIAE--GGTNLRYSFIIKKDGKEEEKID-YG---KNN--WVNF---IPEEKGNYELEVRVKDKYSDKEY 465 (667)
T ss_pred ceEeCCeEEEEEEec--CCCeEEEEEEEEECCEEEEEee-cc---ccc--EEEE---EECCCeeEEEEEEEecccCchhc
Confidence 356799999999994 44444443 2 45887665321 10 011 2333 3467899988653 3322
Q ss_pred eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCe-EEee-cCCCccccCCceEEEEEEEeeCC
Q psy2145 587 EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPI-FTQL-LTGTSEIMEGQSAHYDCRVVPVG 664 (808)
Q Consensus 587 ~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~-~~~~-~~~~~~v~~G~~v~l~C~v~~~g 664 (808)
.....+.|.|.... |. +... .+.......|+.+++.|.++ |
T Consensus 466 D~~k~v~l~V~e~~-----------------------------------P~~i~~il~~~~~~~~vg~~i~~~~~~~--~ 508 (667)
T PRK14081 466 DAHTIVYIKVHEYI-----------------------------------PAEIDYILLPVKEYYLVGDDIEIEVIIQ--N 508 (667)
T ss_pred ccceEEEEEEeccC-----------------------------------ceeeeeEEecccccEEeCCEEEEEEEEe--C
Confidence 23455667666421 32 2221 12223467899999999994 5
Q ss_pred CCCeEEE--EEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE--EeCCc----ceEEEEEEEEEeCCCcc
Q psy2145 665 DPTMRFE--WFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA--INRAG----EAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 665 ~P~p~i~--W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A--~N~~G----~~~~s~~l~V~~~p~~~ 735 (808)
.-..-+. -+.||..+...+.. ... .+.+. +--+|.|+..+ .|... .+...+.+.|..+..+.
T Consensus 509 ~k~v~y~y~~~~NG~~v~~t~Ys----~~~--~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~ 578 (667)
T PRK14081 509 TKDVLIKYILKINGHKVEETDYI----KNK--KYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPIT 578 (667)
T ss_pred CCeEEEEEEEEECCEEEEEeecc----ccc--eEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCce
Confidence 4444443 44577766322110 011 23332 56799999875 44443 23345566676553333
No 420
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=84.77 E-value=17 Score=29.68 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=49.9
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
+.+.|+...|..|+++.+.|... -..+..+-|.- ....+.. ..+-..+.+.+++. | ..-.|.+.-.
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCSts--C~~p~~~GLET~L~k~~~~~--------g~~W~~f~LsnV~~-d-s~~~C~~~C~ 73 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTS--CPQPEKIGLETSLSKTELDS--------GPQWKAFQLSNVTE-D-SSPLCFFNCS 73 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEES--SSS-SEEEEESSSEEEEEEE--------ETTEEEEEEEEE-S-C-EEEEEEEEET
T ss_pred EEEECCccEECCCCCEEEEEcCC--CCCCCcceEEEecCCcccCC--------CCcEEEEEEEcccc-C-CeEEEEEEcC
Confidence 45577888899999999999983 33233445532 1112222 22333677888875 5 4678998875
Q ss_pred ceeEEEEEEEEEeeCC
Q psy2145 264 LGQAVTSGNLLVHSKK 279 (808)
Q Consensus 264 ~g~~~~~~~l~V~~~~ 279 (808)
......++.|+|...|
T Consensus 74 g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 74 GEQSSASANITVYKPP 89 (91)
T ss_dssp TEEEEEEEEEEEEB--
T ss_pred CeEEEeEEeeEEeCCC
Confidence 4455667888887543
No 421
>PHA03281 envelope glycoprotein E; Provisional
Probab=81.29 E-value=37 Score=37.02 Aligned_cols=91 Identities=11% Similarity=0.083 Sum_probs=53.0
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
.|.|.+++..++|.|+--.....|.... .+-|+|.......... ...........|.
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~----------------------p~Vtpk~hga~F~ 356 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDL----------------------PAVTPKPKGAEFH 356 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCC----------------------CCccccccCceEE
Confidence 6999999999999999888866554333 4555665432100000 0000012223444
Q ss_pred eec-CceeecCCCeEEEEEEEeec---CCCCeEEEEee
Q psy2145 188 TSL-KNCEIKEGQRAHFECRLIPV---SDNTMKVEWFH 221 (808)
Q Consensus 188 ~~~-~~~~v~~G~~v~L~C~~~~~---~~p~~~v~W~~ 221 (808)
... .+.....|+++.|.-.+.+. +.=.+.|.||.
T Consensus 357 vknYhShVF~pGDTFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 357 MWHYHSHVFSVGDTFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeccceeEecCCCeeEEEEEEeeeccCCCceeEEEEEE
Confidence 433 34556789999888887532 11246899986
No 422
>PHA03189 UL14 tegument protein; Provisional
Probab=81.28 E-value=15 Score=36.79 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=48.1
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEE-----EE----------ECCEEccCCCcEE-------EEEeCC--EEEEEEc
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFE-----WF----------VNGVELKMGSRFH-------VQHDFG--YVTLDIT 699 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~-----W~----------~~g~~l~~~~~~~-------~~~~~~--~~~L~I~ 699 (808)
.+.-+.+|+.+++.|.+-.-.-|...|. |- .+|..+.++-.++ +..-+. ..+|++
T Consensus 60 AP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF- 138 (348)
T PHA03189 60 APLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF- 138 (348)
T ss_pred CccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE-
Confidence 3456788999999999954445655554 21 1333443332222 222222 234444
Q ss_pred cCCCCCcEEEEEEEEeCC-cceEEEEEE
Q psy2145 700 KCVPADSGVYMCKAINRA-GEAVSSTSL 726 (808)
Q Consensus 700 ~v~~~D~G~Y~C~A~N~~-G~~~~s~~l 726 (808)
++..+-+|.|.|+..|.. |-...++.|
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~i 166 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFVI 166 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEeee
Confidence 456688999999999984 555555444
No 423
>PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with IPR007110 from INTERPRO.
Probab=81.21 E-value=0.9 Score=27.76 Aligned_cols=24 Identities=50% Similarity=0.630 Sum_probs=19.4
Q ss_pred ccccccccchhhhhhhhhcccccc
Q psy2145 281 IQTETQHGESLSRLQQLEQGRYQR 304 (808)
Q Consensus 281 i~~~~~~~~~~~~~~~~e~~~~~~ 304 (808)
|.++++|+.++.+|+.||+....|
T Consensus 1 I~~dTQhp~~lekIq~LE~~~~~R 24 (28)
T PF06582_consen 1 IILDTQHPESLEKIQELEDPSRQR 24 (28)
T ss_pred CcccccCHHHHHHHHHHHcccccC
Confidence 457899999999999999855443
No 424
>PHA03052 Hypothetical protein; Provisional
Probab=80.91 E-value=3.9 Score=30.72 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=29.2
Q ss_pred CceeecCCCeEEEEEEEe-ecCCCCeEEEEeeCCEEc
Q psy2145 191 KNCEIKEGQRAHFECRLI-PVSDNTMKVEWFHNNVPI 226 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~-~~~~p~~~v~W~~~g~~l 226 (808)
..+.+..|..++|.|++. +.+...+.|.|.-|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 567788999999999996 334446789999998887
No 425
>PHA03052 Hypothetical protein; Provisional
Probab=80.26 E-value=5.3 Score=30.06 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=29.2
Q ss_pred CCCccccCCCCcEEEEEEEee-CCCCCceEEEEeCCEEee
Q psy2145 56 PKSIENLRERGHAHFECKLEP-VTDSNLKVEWFKNGRPVT 94 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~-~~~p~~~v~W~~~g~~l~ 94 (808)
|..+ .+.-|..++|.|.+.- .+...+.|-|.-|+..+.
T Consensus 4 P~~i-~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 4 PEGI-VTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred CccE-EEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 4555 8889999999999973 123356889999999883
No 426
>PHA03189 UL14 tegument protein; Provisional
Probab=74.42 E-value=27 Score=35.02 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=41.0
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEE-----Ee----------eCCEEccCCCce-------EEEecC--ceEEEEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVE-----WF----------HNNVPIKSGSRF-------TETNNF--GFVALDI 245 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~-----W~----------~~g~~l~~~~~~-------~~~~~~--~~~~L~I 245 (808)
+....+.+|+.|++.|.+..-.-|...|. |- .+|..+.....+ +...-+ ...+|++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 44566889999999999954444444433 21 123333322222 211111 1234443
Q ss_pred ccCCCCCcEEEEEEEEeCc
Q psy2145 246 MQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~~ 264 (808)
++..+-+|.|.|+..|..
T Consensus 139 -~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 139 -RVSTSTAGMYECVLRNET 156 (348)
T ss_pred -EEEecccceEEEEecccc
Confidence 345677999999999953
No 427
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=73.49 E-value=42 Score=26.34 Aligned_cols=65 Identities=18% Similarity=0.326 Sum_probs=40.3
Q ss_pred ccCCceEEEEEEEeeCC-CCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE--EEeCCcceEEEE
Q psy2145 648 IMEGQSAHYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK--AINRAGEAVSST 724 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--A~N~~G~~~~s~ 724 (808)
...|..+.|.+.. .+ .....+.|.+.+.....+.. ... .....|.|+.. |.|..|..+...
T Consensus 11 ~~~~~~v~f~~~~--~~~~~~~~~~W~fgdg~~~~~~~---------~~~-----~y~~~G~y~v~l~v~n~~g~~~~~~ 74 (79)
T smart00089 11 GVAGESVTFTATS--SDDGSIVSYTWDFGDGTSSTGPT---------VTH-----TYTKPGTYTVTLTVTNAVGSASATV 74 (79)
T ss_pred CCCCCEEEEEEEC--CCCCCeEEEEEEeCCCCccCCCC---------EEE-----EeCCCcEEEEEEEEEcCCCcEEEEE
Confidence 3468899999987 33 45788999874332211111 111 22467887754 689999776666
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.+.|
T Consensus 75 ~i~v 78 (79)
T smart00089 75 TVVV 78 (79)
T ss_pred EEEE
Confidence 6665
No 428
>PHA03286 envelope glycoprotein E; Provisional
Probab=71.81 E-value=50 Score=35.26 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=28.5
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEE-EEEEEec
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRG 144 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~ 144 (808)
.|.|.+++..++|.|+-...|..|....+ +-|+|.+
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~ 164 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSG 164 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEec
Confidence 69999999999999999999877665443 4556643
No 429
>PHA03112 IL-18 binding protein; Provisional
Probab=71.19 E-value=15 Score=32.47 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=40.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCC-ceEEEEeCC-EEeec-------------cCcEEEEeeCCeEEEEEcccCcC-CCeeEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSN-LKVEWFKNG-RPVTI-------------GHRFRPIHDFGYVALDIIDTIPE-DSGTYT 124 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~-~~v~W~~~g-~~l~~-------------~~r~~~~~~~~~~~L~I~~~~~~-D~G~Y~ 124 (808)
...+|+.+.|+|.+-+. .|. ..+.|..++ +.... +.+.......-...|.+.+++.+ ..-..+
T Consensus 34 p~k~~~~vvL~C~gcs~-fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~T 112 (141)
T PHA03112 34 PTKETEKVVLECRGCSY-FPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLT 112 (141)
T ss_pred ccCCCCEEEEEEECccC-CCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceE
Confidence 34679999999999853 354 578999765 22221 11111111123345777777655 334778
Q ss_pred EEEEecCc
Q psy2145 125 CRAVNLVG 132 (808)
Q Consensus 125 C~a~n~~g 132 (808)
|+.....|
T Consensus 113 CVL~D~~~ 120 (141)
T PHA03112 113 CVLMDLDG 120 (141)
T ss_pred EEEecCCc
Confidence 87765443
No 430
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=69.62 E-value=7.3 Score=29.28 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=29.8
Q ss_pred ccCCceEEEEEEEeeCCCCCeEEEEEE---C--CEEccCCCcEE---EEEeCCEEEEEEccCCCCCcE
Q psy2145 648 IMEGQSAHYDCRVVPVGDPTMRFEWFV---N--GVELKMGSRFH---VQHDFGYVTLDITKCVPADSG 707 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g~P~p~i~W~~---~--g~~l~~~~~~~---~~~~~~~~~L~I~~v~~~D~G 707 (808)
|..|+.++|. |.|...|.||+ | +..|-.....+ +...-...-|+|.+|...++|
T Consensus 2 v~~G~N~TL~------Gp~~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 2 VTVGSNVTLV------GPPDGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred EeEcCcEEEe------CCCCCceEEEEecCCCCccccCCCCCccccceEeEecCCeEEEEEecccccC
Confidence 4568888884 76777899993 2 24444333332 111111224677776666554
No 431
>KOG0200|consensus
Probab=69.47 E-value=13 Score=42.96 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.2
Q ss_pred CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 691 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
.....+.+.++...+.|.|.|.+.+..+.......+.+.
T Consensus 114 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (609)
T KOG0200|consen 114 GTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFLEVS 152 (609)
T ss_pred CceEeeeeeccChhhcceeeccCCCcccccccceEEecc
Confidence 456789999999999999999998865655555555544
No 432
>KOG0200|consensus
Probab=68.43 E-value=57 Score=37.80 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCCCCCEEEEEEEEe
Q psy2145 559 FGYVAMDLSHVRAEDEGIYICKATN 583 (808)
Q Consensus 559 ~~~~~L~I~~v~~~D~G~Y~C~a~N 583 (808)
.....+.+.++...+.|.|.|...+
T Consensus 114 ~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 114 GTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred CceEeeeeeccChhhcceeeccCCC
Confidence 3455789999999999999999877
No 433
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=68.17 E-value=27 Score=26.73 Aligned_cols=60 Identities=18% Similarity=0.357 Sum_probs=38.0
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECC-EEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE--EEeCCcceE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG-VELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK--AINRAGEAV 721 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g-~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--A~N~~G~~~ 721 (808)
..+..|+.++|.... .......+.|.+++ .....+..+ +.+. ...|.|... |.|..|...
T Consensus 6 ~~~~~g~~v~f~~~~--~~g~~~~y~W~fgd~~~~~~~~~~---------t~ty-----~~~G~y~V~ltv~n~~g~~t 68 (69)
T PF00801_consen 6 TYVPTGQPVTFTASS--SDGSPVTYSWDFGDNGTVSTGSSV---------THTY-----SSPGTYTVTLTVTNGVGSAT 68 (69)
T ss_dssp SCEBTTSEEEEEETT--TTSSECEEEEE-SSESEEECSSEE---------EEEE-----SSSEEEEEEEEEEETTSEEE
T ss_pred CEEcCCCEEEEEEEc--cCCCCeEEEEEECCCCccccCCCE---------EEEc-----CCCeEEEEEEEEEECCCCcC
Confidence 357789999999876 34456799999988 222222222 2222 348988755 678888764
No 434
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=66.12 E-value=44 Score=25.50 Aligned_cols=60 Identities=17% Similarity=0.330 Sum_probs=39.2
Q ss_pred CeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 667 TMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 667 ~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
.....|++||+.+..- .+.+. .+.+-+..-+.+.+...|.+++.+....|..-.+....|
T Consensus 6 ~v~H~W~~~g~~~~~i-~l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 6 TVYHRWYKNGKLVARI-PLPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEEECCEEEEEE-EEecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 3567899999876521 11111 122334444455568999999999999998877776655
No 435
>PHA03240 envelope glycoprotein M; Provisional
Probab=63.33 E-value=9 Score=35.98 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=41.3
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--------CC---EEee------ccC---------cEEEEeeCCeEEEEEcc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--------NG---RPVT------IGH---------RFRPIHDFGYVALDIID 114 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--------~g---~~l~------~~~---------r~~~~~~~~~~~L~I~~ 114 (808)
.+.+|.+|+|.-.-- ..|.-.+.||+ +| .+|= .+. ...+...-.+++|.|.+
T Consensus 34 t~r~G~nVTLga~~~--lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 34 TTREGDPLLLGGGHG--LGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ccccCCceeeCCccc--CCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 678999999875432 24677999998 11 2221 000 11222233446899999
Q ss_pred cCcCCCeeEEEEE
Q psy2145 115 TIPEDSGTYTCRA 127 (808)
Q Consensus 115 ~~~~D~G~Y~C~a 127 (808)
+..+|.|+|.-+-
T Consensus 112 vn~sd~~nYcr~k 124 (258)
T PHA03240 112 LNLSDAGEYCRKK 124 (258)
T ss_pred EeecCcchhhhcc
Confidence 9999999995443
No 436
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=60.40 E-value=12 Score=41.49 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred ccCCceEEEEEEEeeCC--CCCeEEEEEE--------CCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEE--EEEEe
Q psy2145 648 IMEGQSAHYDCRVVPVG--DPTMRFEWFV--------NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM--CKAIN 715 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g--~P~p~i~W~~--------~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~--C~A~N 715 (808)
+..++.+.|...+.... .....+.|.. ....+..... ..........|.|..-..+..+.|. +.|.+
T Consensus 205 vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~ 283 (440)
T PF02010_consen 205 VNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSS-MTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTD 283 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCEEEEEEEeCCCCcCCCEEEEEEEeecccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 77788888888773111 2356889987 1122211111 0111112336777655555555665 46677
Q ss_pred CCcce-EEEEEEEEEeCCCccccCCCh
Q psy2145 716 RAGEA-VSSTSLKVKSKSDIVSESLQP 741 (808)
Q Consensus 716 ~~G~~-~~s~~l~V~~~p~~~~~~~~~ 741 (808)
..|.. .++..+.+..+|....=...|
T Consensus 284 ~~~~~~~a~~~~~~n~pP~~g~c~v~P 310 (440)
T PF02010_consen 284 SSGSSGSASISFTVNAPPSGGSCSVSP 310 (440)
T ss_dssp ---------------------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 76654 667778888777543333334
No 437
>PHA03112 IL-18 binding protein; Provisional
Probab=60.39 E-value=35 Score=30.32 Aligned_cols=70 Identities=20% Similarity=0.178 Sum_probs=39.8
Q ss_pred ccCCCceEEEEEEeeCCCCC-cEEEEEECC-EecCC-------------CCCeEEEeeCcEEEEEECCCCCC-CCEEEEE
Q psy2145 516 VEEGKNAHFSCRLIPVGDPT-LKVEWFRNE-KPLED-------------SSRITTKHDFGYVAMDLSHVRAE-DEGIYIC 579 (808)
Q Consensus 516 v~~G~~v~l~C~v~~~g~P~-~~v~W~k~g-~~l~~-------------~~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C 579 (808)
..+|+++.|+|..- .-.|. .-+.|..++ +.+.+ +.+.......-...|.+.+++.+ +.-.++|
T Consensus 35 ~k~~~~vvL~C~gc-s~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TC 113 (141)
T PHA03112 35 TKETEKVVLECRGC-SYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTC 113 (141)
T ss_pred cCCCCEEEEEEECc-cCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEE
Confidence 46799999999983 23465 459999765 22211 11111111122335676777755 4448888
Q ss_pred EEEeCCe
Q psy2145 580 KATNALG 586 (808)
Q Consensus 580 ~a~N~~G 586 (808)
+.....|
T Consensus 114 VL~D~~~ 120 (141)
T PHA03112 114 VLMDLDG 120 (141)
T ss_pred EEecCCc
Confidence 8766544
No 438
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=59.79 E-value=76 Score=24.21 Aligned_cols=54 Identities=22% Similarity=0.446 Sum_probs=37.1
Q ss_pred CceEEEEeCCEEeec------cCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEE
Q psy2145 81 NLKVEWFKNGRPVTI------GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142 (808)
Q Consensus 81 ~~~v~W~~~g~~l~~------~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 142 (808)
.....|+++|+.+.. +.|++ +-.-....+.+.|.+++.+....|..-....+.|
T Consensus 6 ~v~H~W~~~g~~~~~i~l~i~g~r~R--------t~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 6 TVYHRWYKNGKLVARIPLPISGGRWR--------TWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEEECCEEEEEEEEeccCCCEE--------EEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 456789999987652 33433 3333344457899999999988888766666655
No 439
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=57.17 E-value=43 Score=27.51 Aligned_cols=69 Identities=13% Similarity=0.214 Sum_probs=42.0
Q ss_pred ceEEEEEEeeCCCCCcEEEEEE--CCEe----cC-CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 521 NAHFSCRLIPVGDPTLKVEWFR--NEKP----LE-DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 521 ~v~l~C~v~~~g~P~~~v~W~k--~g~~----l~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+.=.|... .|.|++.|+|.- +|.. .. ....+.+. +.+.+-.....|.-..+|++....-+...++.
T Consensus 22 v~VA~CiSa-~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~-----S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~ 95 (98)
T cd05890 22 MLVATCVSA-NGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVI-----SRYRLVPSREAHKQKLTCIVNYRNDRFTDSVT 95 (98)
T ss_pred EEEEEEEcC-CCcCCcEeEEEccCCCceeeeeeCCCCCCEEEE-----EEEEEeECHHHcCCEeEEEEEeccccccccEE
Confidence 345578854 899999999974 2321 00 01112221 24666677788888999999886444444444
Q ss_pred EE
Q psy2145 594 MK 595 (808)
Q Consensus 594 l~ 595 (808)
|.
T Consensus 96 L~ 97 (98)
T cd05890 96 LN 97 (98)
T ss_pred ec
Confidence 43
No 440
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=55.42 E-value=47 Score=25.37 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=22.2
Q ss_pred eeecCCCeEEEEEEEeecCCCCeEEEEeeCC
Q psy2145 193 CEIKEGQRAHFECRLIPVSDNTMKVEWFHNN 223 (808)
Q Consensus 193 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g 223 (808)
..+..|+.++|.... .......+.|..++
T Consensus 6 ~~~~~g~~v~f~~~~--~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 6 TYVPTGQPVTFTASS--SDGSPVTYSWDFGD 34 (69)
T ss_dssp SCEBTTSEEEEEETT--TTSSECEEEEE-SS
T ss_pred CEEcCCCEEEEEEEc--cCCCCeEEEEEECC
Confidence 457789999999987 34556789999877
No 441
>PHA03240 envelope glycoprotein M; Provisional
Probab=55.41 E-value=24 Score=33.29 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=49.2
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE--------CCE---Ecc---C--CC----------cEEEEEeCCEEEEEEc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV--------NGV---ELK---M--GS----------RFHVQHDFGYVTLDIT 699 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~--------~g~---~l~---~--~~----------~~~~~~~~~~~~L~I~ 699 (808)
..+.+|++|+|.-.- .-.|.-.+.||+ +|. +|- . .+ ...+...-..++|.|.
T Consensus 33 vt~r~G~nVTLga~~--~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~ 110 (258)
T PHA03240 33 HTTREGDPLLLGGGH--GLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA 110 (258)
T ss_pred cccccCCceeeCCcc--cCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence 467899999998643 235788999998 121 110 0 00 1112222234699999
Q ss_pred cCCCCCcEEEEEEEEeC-Ccce----EEEEEEEEE
Q psy2145 700 KCVPADSGVYMCKAINR-AGEA----VSSTSLKVK 729 (808)
Q Consensus 700 ~v~~~D~G~Y~C~A~N~-~G~~----~~s~~l~V~ 729 (808)
+|...|.|+| |.-.+. .|.. .+-..|.|+
T Consensus 111 ~vn~sd~~nY-cr~k~~~~g~~e~pt~sC~~l~~r 144 (258)
T PHA03240 111 HLNLSDAGEY-CRKKCPPKGDCEFPTMSCFRLILR 144 (258)
T ss_pred EEeecCcchh-hhccCCCCCCcCCCcceeeeEeee
Confidence 9999999999 554444 4543 223567774
No 442
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=54.68 E-value=24 Score=26.59 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=15.5
Q ss_pred ccCCCceEEEEEEeeCCCCCcEEEEEE
Q psy2145 516 VEEGKNAHFSCRLIPVGDPTLKVEWFR 542 (808)
Q Consensus 516 v~~G~~v~l~C~v~~~g~P~~~v~W~k 542 (808)
|..|++++|. |.|...|+|+|
T Consensus 2 v~~G~N~TL~------Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV------GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe------CCCCCceEEEE
Confidence 5678888875 55667799983
No 443
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=53.40 E-value=21 Score=39.50 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred eecCCeEEEEEEEeecC--CCccEEEEEE--------CCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEE--EEEc
Q psy2145 327 VAENQAAHFEARLIPVG--DSKLKVTWLR--------NGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTC--RAVN 394 (808)
Q Consensus 327 v~~G~~~~l~C~~~~~g--~p~~~v~W~~--------~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C--~a~n 394 (808)
+..++.+.|...+.... .....+.|.. ....+...... .........|.|..-.....+.|.. .|.+
T Consensus 205 vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~ 283 (440)
T PF02010_consen 205 VNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSM-TTTGSSSSNLVIDPGVLEPGSTYTFRLTVTD 283 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 67788888877663111 3447789987 11111111100 1111122356666555555667765 4555
Q ss_pred CCcce-EEEEEEEEEecc
Q psy2145 395 ELGEA-VTSSTLFVESKA 411 (808)
Q Consensus 395 ~~g~~-~~~~~l~V~~~~ 411 (808)
..+.. ..+..+.+..+|
T Consensus 284 ~~~~~~~a~~~~~~n~pP 301 (440)
T PF02010_consen 284 SSGSSGSASISFTVNAPP 301 (440)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 44433 445566665444
No 444
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=50.25 E-value=62 Score=26.66 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=26.6
Q ss_pred CccccCCceEEEEEEEeeCCCCC---eEEEEEECCEEc
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPT---MRFEWFVNGVEL 679 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~---p~i~W~~~g~~l 679 (808)
+..+..|+.++|...+.-.|.-. ..+.||.+|..+
T Consensus 12 ~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~ 49 (101)
T PF07705_consen 12 PSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV 49 (101)
T ss_dssp -SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE
T ss_pred CCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee
Confidence 45678899999999997666543 478999999887
No 445
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=43.57 E-value=51 Score=27.09 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=39.9
Q ss_pred cEEEEEEEeeCCCCCceEEEEe--CCEEee-----ccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEE
Q psy2145 67 HAHFECKLEPVTDSNLKVEWFK--NGRPVT-----IGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQAT 139 (808)
Q Consensus 67 ~v~l~C~~~~~~~p~~~v~W~~--~g~~l~-----~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 139 (808)
.+.=.|.+.. |.|+..|.|.- +|..-. .+.-+.+. +.+.+-.....|.-.-+|++....-...-++.
T Consensus 22 v~VA~CiSa~-GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~-----S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~ 95 (98)
T cd05890 22 MLVATCVSAN-GKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVI-----SRYRLVPSREAHKQKLTCIVNYRNDRFTDSVT 95 (98)
T ss_pred EEEEEEEcCC-CcCCcEeEEEccCCCceeeeeeCCCCCCEEEE-----EEEEEeECHHHcCCEeEEEEEeccccccccEE
Confidence 3445899775 89999999984 343200 00111111 24566667777888899999875333333444
Q ss_pred E
Q psy2145 140 L 140 (808)
Q Consensus 140 l 140 (808)
|
T Consensus 96 L 96 (98)
T cd05890 96 L 96 (98)
T ss_pred e
Confidence 3
No 446
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=38.66 E-value=1.3e+02 Score=24.56 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=37.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCC---ceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSN---LKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~---~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
.+..|+.+.|...+...|... ..+.||.+|..+. ...+..+..+...++.|.-... ..|.|...+.
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~-~~~i~~L~~g~~~~v~~~~~~~-~~G~~~i~~~ 82 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSVS-TVTIPSLAPGESETVTFTWTPP-SPGSYTIRVV 82 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEE-EEEESEB-TTEEEEEEEEEE-S-S-CEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEEEEECCceec-cEEECCcCCCcEEEEEEEEEeC-CCCeEEEEEE
Confidence 467899999999998755433 4788999998772 1111112222222333332222 6677777664
No 447
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=36.89 E-value=2.4e+02 Score=23.21 Aligned_cols=80 Identities=9% Similarity=0.017 Sum_probs=46.7
Q ss_pred CCCceEeecCCeEEEEEEEeecCCCcc-EEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2145 321 PMRDIHVAENQAAHFEARLIPVGDSKL-KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399 (808)
Q Consensus 321 ~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 399 (808)
.|....+..|+.+.+.|.. .-+.+ .+.|.-. -.+..+....+-..+.|.++.. | ..-.|.+.-.....
T Consensus 9 ~P~~~vV~~G~Sv~VNCSt---sC~~p~~~GLET~------L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~ 77 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCST---SCPQPEKIGLETS------LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQS 77 (91)
T ss_dssp ESSEEEEETTEEEEEEEEE---SSSS-SEEEEESS------SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEE
T ss_pred ECCccEECCCCCEEEEEcC---CCCCCCcceEEEe------cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEE
Confidence 4456778999999999996 33433 3444221 1122223333455788888885 5 46679887643344
Q ss_pred EEEEEEEEEecc
Q psy2145 400 VTSSTLFVESKA 411 (808)
Q Consensus 400 ~~~~~l~V~~~~ 411 (808)
..++.|+|...|
T Consensus 78 ~~~~~ItVY~~P 89 (91)
T PF03921_consen 78 SASANITVYKPP 89 (91)
T ss_dssp EEEEEEEEEB--
T ss_pred EeEEeeEEeCCC
Confidence 556788887554
No 448
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=36.80 E-value=2e+02 Score=22.34 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=37.1
Q ss_pred ecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEE--EEEEeCceeEEEEEE
Q psy2145 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT--CRAVNALGQAVTSGN 272 (808)
Q Consensus 195 v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~--C~a~n~~g~~~~~~~ 272 (808)
...|..+.|.+...+. .....+.|...+.....+.. . .......|.|+ ..+.|..|.......
T Consensus 11 ~~~~~~v~f~~~~~~~-~~~~~~~W~fgdg~~~~~~~-----------~---~~~y~~~G~y~v~l~v~n~~g~~~~~~~ 75 (79)
T smart00089 11 GVAGESVTFTATSSDD-GSIVSYTWDFGDGTSSTGPT-----------V---THTYTKPGTYTVTLTVTNAVGSASATVT 75 (79)
T ss_pred CCCCCEEEEEEECCCC-CCeEEEEEEeCCCCccCCCC-----------E---EEEeCCCcEEEEEEEEEcCCCcEEEEEE
Confidence 3478999999987321 45678889763332111111 1 11234678885 445677775544455
Q ss_pred EEE
Q psy2145 273 LLV 275 (808)
Q Consensus 273 l~V 275 (808)
+.|
T Consensus 76 i~v 78 (79)
T smart00089 76 VVV 78 (79)
T ss_pred EEE
Confidence 444
No 449
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=36.52 E-value=2.1e+02 Score=22.41 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=37.6
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE--EEeCCcceEE-EEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK--AINRAGEAVS-STSLK 727 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--A~N~~G~~~~-s~~l~ 727 (808)
|+.+.|..... .+.....+.|.+++....... ...... .....|.|+.. |.|..|.... +..|.
T Consensus 14 ~~~v~~~~~~~-~~~~~~~~~W~fgdg~~~~~~-------~~~~~~-----~y~~~G~y~v~l~v~d~~g~~~~~~~~V~ 80 (81)
T cd00146 14 GASVTFSASDS-SGGSIVSYKWDFGDGEVSSSG-------EPTVTH-----TYTKPGTYTVTLTVTNAVGSSSTKTTTVV 80 (81)
T ss_pred CccEEEEEEeC-CCCCEEEEEEEeCCCCccccC-------CCceEE-----EcCCCcEEEEEEEEEeCCCCEEEEEEEEE
Confidence 88999998873 223567999998653111111 011111 22468888654 6788776655 55554
Q ss_pred E
Q psy2145 728 V 728 (808)
Q Consensus 728 V 728 (808)
|
T Consensus 81 V 81 (81)
T cd00146 81 V 81 (81)
T ss_pred C
Confidence 3
No 450
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=32.18 E-value=64 Score=24.26 Aligned_cols=44 Identities=14% Similarity=0.472 Sum_probs=27.4
Q ss_pred EEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 202 HFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 202 ~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
+|+|-. +...-+.||-||..+-.-.. . +|.+.++ .++|+|+-..
T Consensus 2 tltC~s----~~sLPiswYcN~TRLlRlt~-----~----Tlt~~~l----tcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPS----NASLPISWYCNGTRLLRLTQ-----Q----TLTVVTL----TCNFTCVGQS 45 (71)
T ss_pred ceecCC----CCCCcccEEECCceeeeecC-----C----eEeeeee----eEEeeecCCC
Confidence 577864 33455899999887642211 1 4555443 6899998654
No 451
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=29.32 E-value=98 Score=28.45 Aligned_cols=23 Identities=43% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEEcccCcCCCeeEEEEEEec
Q psy2145 108 VALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 108 ~~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
.-|.|.+.+.+|+|.|.-++.-.
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEEC
Confidence 46999999999999999999854
No 452
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=25.79 E-value=4.7e+02 Score=23.21 Aligned_cols=40 Identities=13% Similarity=0.423 Sum_probs=19.9
Q ss_pred ccceeecCCCCccccCCCCcEEEEEEEeeCCC---CCceEEEEe
Q psy2145 48 FIYYTVTKPKSIENLRERGHAHFECKLEPVTD---SNLKVEWFK 88 (808)
Q Consensus 48 ~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~---p~~~v~W~~ 88 (808)
++..+...|-.- .+..|++|.++|.+...|+ ....+.||.
T Consensus 31 YpF~v~tmPVpk-~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ 73 (137)
T PF12988_consen 31 YPFTVETMPVPK-KIKKGETVEIRCELKREGNYADTRYTIRYFQ 73 (137)
T ss_dssp -SEEEEE----S-S--TTEEEEEEEEEEESS--SS---EEEEE-
T ss_pred CCcEEEEecccc-ccCCCCEEEEEEEEecCceecccEEEEEEEe
Confidence 433334444444 6789999999999986443 233666664
No 453
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=20.50 E-value=1.7e+02 Score=26.89 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=25.7
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
.|.|.+.+.+|+|.|..++.-.......-+.+.+
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 6999999999999999998866544444444433
Done!