RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2145
(808 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 315 bits (808), Expect = 6e-98
Identities = 121/699 (17%), Positives = 216/699 (30%), Gaps = 160/699 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ + +E +CK++ P +++ W+K + ++ +L
Sbjct: 9 IEPLEHVE-AAIGEPITLQCKVDGTPE----IRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I D G YTC+A N VG A L I+ +
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLV-------------------IKERK----- 99
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
P F LK+ G FECR ++V W+ + +K +
Sbjct: 100 -----------LPPSFARKLKDVHETLGFPVAFECR--INGSEPLQVSWYKDGELLKDDA 146
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
+ L I+Q G Y C A N LG A +S L + +
Sbjct: 147 NLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV---------- 196
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
P F + +A ++ F+ + G + +K+T
Sbjct: 197 ------------------------PPFFDLKPVSVDLALGESGTFKCHV--TGTAPIKIT 230
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
W ++ I+ L D+G YTC A N G+ S+ L V+
Sbjct: 231 WAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 290
Query: 411 ASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEV----EVTQQPSFTVQ--LNGPTELVEG 464
I+ LE + K++E ++ P V + ++
Sbjct: 291 PRF------------IKKLEPSRI--VKQDEHTRYECKIGGSPEIKVLWYKDE--TEIQE 334
Query: 465 EGTIITDTQHPKGLEKIRKL--ED--------TEPHKRPEVDDNAT---KQRPVFTKPLQ 511
+ ++ L ED + + K+ PVF K
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG--SASSSTSLKVKEPPVFRKKPH 392
Query: 512 NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571
+ +G + H C G P +V W ++++ L + + ++ + +V +
Sbjct: 393 PV-ETLKGADVHLECE--LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 449
Query: 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631
D G Y CKA+N +G S+ +K
Sbjct: 450 ADIGEYQCKASNDVGSDTCVGSITLK---------------------------------- 475
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS-RFHVQHD 690
P F + L+ + G+ + G + WF + E+ S + +
Sbjct: 476 --APPRFVKKLSDI-STVVGEEVQLQATI--EGAEPISVAWFKDKGEIVRESDNIWISYS 530
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
TL ++ PA++G Y C+ N AG +L V
Sbjct: 531 ENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 282 bits (724), Expect = 9e-86
Identities = 109/575 (18%), Positives = 207/575 (36%), Gaps = 114/575 (19%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
+ P F L++ E G+ +C++ +++ W+ + ++S +
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGR 301
+L I + D G YTC+A N++G +S L++ +K
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL--------------------- 100
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS 361
P F + ++D+H FE R G L+V+W ++G ++
Sbjct: 101 -------------PPSFARKLKDVHETLGFPVAFECR--INGSEPLQVSWYKDGELLKDD 145
Query: 362 NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV---ESKASLQLDTQ 418
+ T L T G Y C A N LG A +S+ L + E L
Sbjct: 146 ANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPV 205
Query: 419 NEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQ--LNGPTELVEGEGTIITDTQHPK 476
+ ++ F + VT + + E+ G +T ++
Sbjct: 206 SVDLAL-----GESGTF------KCHVTGTAPIKITWAKDN-REIRPGGNYKMTLVENTA 253
Query: 477 GLEKIRKLEDTEPH-----------KRPEVDDNAT---KQRPVFTKPLQNIDAVEEGKNA 522
L + + +A ++ P F K L+ V++ ++
Sbjct: 254 TLT----VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT 309
Query: 523 HFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582
+ C++ G P +KV W+++E +++SS+ +++ ++ ED G Y C+A
Sbjct: 310 RYECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 367
Query: 583 NALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL 642
NA G A ++ S+K+K E P+F +
Sbjct: 368 NAAGSASSSTSLKVK------------------------------------EPPVFRKKP 391
Query: 643 TGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCV 702
E ++G H +C + G P + W + EL+ G ++ + + ++ I
Sbjct: 392 H-PVETLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVD 448
Query: 703 PADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
AD G Y CKA N G S+ +K+ V +
Sbjct: 449 SADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKK 483
Score = 89.9 bits (223), Expect = 9e-19
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
E P F + L E G+ C+V G P +R W+ +L+ + +Q
Sbjct: 3 MEPPYFIEPLE-HVEAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNN 59
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+L I K +D G Y CKA N G SS L +K
Sbjct: 60 VASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK 96
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 239 bits (611), Expect = 8e-68
Identities = 109/711 (15%), Positives = 184/711 (25%), Gaps = 191/711 (26%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV- 108
++ C + PV W+K T V
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPV----PVFRWYKFIEGTTRKQAVVLNDRVKQVS 305
Query: 109 -ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
L I D + EDSG Y C N VG V+ L
Sbjct: 306 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL--------------------------- 338
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVP 225
T T + G+ A F C+ P+ V W +
Sbjct: 339 -----------TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK----TVSWMKDGKA 383
Query: 226 IKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTET 285
I L I ED G+Y C N A S L + +
Sbjct: 384 IGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD----- 428
Query: 286 QHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS 345
PV Q ++ + + + G+
Sbjct: 429 -----------------------------PPVIRQAFQEETMEPGPSVFLKCV--AGGNP 457
Query: 346 KLKVTWLRNGVPIQASNRVS-----TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV 400
+++W +G I ++R T++ LN + D G Y C A +++G A
Sbjct: 458 TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517
Query: 401 TSSTLFVESKASLQLDTQNEAALQKIQNLEDTS-RFKRKEEEEVEVTQQPSFTVQ----- 454
S+ L V ++ ++K + + V P ++
Sbjct: 518 HSAKLNVYGLPYIRQ-------MEKKAIVAGETLIV------TCPVAGYPIDSIVWERDN 564
Query: 455 ---LNGPTELVEGEGT-IITDTQHPKGLEKIRKLEDT-----EPHKRPEVDDNAT----- 500
+ V GT II + + D + +
Sbjct: 565 RALPINRKQKVFPNGTLIIENVERN---------SDQATYTCVAKNQEGYSARGSLEVQV 615
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDF 559
P + G+ C G L ++W + + + + ITT
Sbjct: 616 MVLPRIIPFAFEEGPAQVGQYLTLHCS--VPGGDLPLNIDWTLDGQAISEDLGITTSRVG 673
Query: 560 GYVAM-DLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
++ + V A G + C A N G T + +
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY--------------------- 712
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
P + T +G A +C+ G P + W +
Sbjct: 713 ---------------VPPRWILEPT-DKAFAQGSDAKVECKA--DGFPKPQVTWKKAVGD 754
Query: 679 LKMGSRFHVQHDFGYV---TLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726
+ + D V TL + + G Y+C+AIN G +S+ +
Sbjct: 755 TPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 226 bits (578), Expect = 2e-63
Identities = 97/703 (13%), Positives = 174/703 (24%), Gaps = 171/703 (24%)
Query: 68 AHFECKLEPVT-DSNLKVEWFKNGRPVTIGH-----RFRPIHDFGYVALDIIDTIPEDS- 120
A +C + D V W + ++ + G L I + PED
Sbjct: 156 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL-VLPSG--ELHIREVGPEDGY 212
Query: 121 GTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETT 180
+Y CR + + + +
Sbjct: 213 KSYQCRTKHRLTGETRL------SATKGRLVITEPISSAVPK------------------ 248
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
+ C W+ +
Sbjct: 249 ---VVSLAKFDMKTYSGSSTMALLC--PAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ 303
Query: 241 V--ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
V L I + EDSG Y C N++G L
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL------------------------- 338
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
TV+ V + A F + G+ V+W+++G I
Sbjct: 339 ------------TVTAPLSAKIDPPTQTVDFGRPAVFTCQYT--GNPIKTVSWMKDGKAI 384
Query: 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQ 418
S V L + ED G Y C N+ A S+ L + +
Sbjct: 385 GHSESV----------LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR-------- 426
Query: 419 NEAALQKIQNLEDTSRFKRKEEEEVEVT------QQPSFTVQLNGPTELVEGEGTIITDT 472
Q ++ + + V + P + +L+G ++ + +
Sbjct: 427 -FDPPVIRQAFQEET---MEPGPSVFLKCVAGGNPTPEISWELDG-KKIANNDRYQVGQY 481
Query: 473 QHPKGLEKIRKLEDTEPHKR-------------PEVDDNAT---KQRPVFTKPLQNIDAV 516
G + + L T H + +A P + + A+
Sbjct: 482 VTVNG-DVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQM-EKK-AI 538
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
G+ +C + G P + W R+ + L + + + + ++ R D+
Sbjct: 539 VAGETLIVTCPVA--GYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE--RNSDQAT 594
Query: 577 YICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636
Y C A N G S++++ P
Sbjct: 595 YTCVAKNQEGY-SARGSLEVQVM----------------------------------VLP 619
Query: 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELKMGSRFHVQHDFGYV- 694
GQ C V G + +W ++G +
Sbjct: 620 RIIPFAFEEGPAQVGQYLTLHCSV--PGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGS 677
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
L I + +G + C A N AG +T L V + E
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE 720
Score = 222 bits (568), Expect = 6e-62
Identities = 119/731 (16%), Positives = 198/731 (27%), Gaps = 186/731 (25%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFK-NGRPVTIGHRFRPIHDFGYVA 109
+ +P + + A ECK P+ ++ W + +G V R I G
Sbjct: 42 LKEPTNRIDFSNSTGAEIECKASGNPM----PEIIWIRSDGTAVGDVPGLRQISSDGK-- 95
Query: 110 LDIIDTIPED------SGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQY 163
L ED + Y C A N G +
Sbjct: 96 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRD------------------------- 130
Query: 164 LEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHN 222
+ A + + + G A +C + V+D V W +
Sbjct: 131 ------------VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD 178
Query: 223 NVPI-----KSGSRFTETNNFGFVALDIMQCLPEDS-GVYTCRAVNALGQAVTSGNLLVH 276
+ ++ + L I + PED Y CR + L
Sbjct: 179 EEENYFPGAEYDGKYLVLPS---GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKG- 234
Query: 277 SKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAP--VFTQPMRDIHVAENQAAH 334
R I E S P V + +
Sbjct: 235 ---------------------------RLVITEPISSAVPKVVSLAKFDMKTYSGSSTMA 267
Query: 335 FEARLIPVGDSKLKVTWLRNGVPIQASNRV--STMHDFGYVALNFKYTYPEDSGTYTCRA 392
G W + V + L K EDSG Y C
Sbjct: 268 LLC--PAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV 325
Query: 393 VNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFT 452
N +G + L V + S ++D + + + F + T P T
Sbjct: 326 NNSVGGESVETVLTVTAPLSAKIDPPTQTV-----DFGRPAVF------TCQYTGNPIKT 374
Query: 453 VQ--LNGPTELVEGEGT-IITDTQHPKGLEKIRKLEDT------------EPHKRPEVDD 497
V +G + E I + ED E+
Sbjct: 375 VSWMKDG-KAIGHSESVLRIESVK----------KEDKGMYQCFVRNDRESAEASAELKL 423
Query: 498 NATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT--- 554
PV + Q +E G + C G+PT ++ W + K + ++ R
Sbjct: 424 GGRFDPPVIRQAFQEE-TMEPGPSVFLKCV--AGGNPTPEISWELDGKKIANNDRYQVGQ 480
Query: 555 --TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGL 612
T + ++++ V A D G+Y C A + +G A +A + +
Sbjct: 481 YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV---------------- 524
Query: 613 KKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEW 672
Y P Q+ I+ G++ C V G P W
Sbjct: 525 --------------------YGLPYIRQM--EKKAIVAGETLIVTCPV--AGYPIDSIVW 560
Query: 673 FVNGVELKMGSRFHVQHDFGYVTLDITK-CVPADSGVYMCKAINRAGEAVS-STSLKVKS 730
+ L + + V + G TL I +D Y C A N+ G + S ++V
Sbjct: 561 ERDNRALPINRKQKVFPN-G--TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617
Query: 731 KSDIVSESLQP 741
I+ + +
Sbjct: 618 LPRIIPFAFEE 628
Score = 200 bits (510), Expect = 3e-54
Identities = 94/666 (14%), Positives = 176/666 (26%), Gaps = 173/666 (25%)
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
+++ + + + A+ G + A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAAN------------------------------ 30
Query: 170 YQRGEYIEETTTQAPIFTT-SLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNN---V 224
+ + P+F + A EC+ S N ++ W ++ V
Sbjct: 31 ------PPDADQKGPVFLKEPTNRIDFSNSTGAEIECK---ASGNPMPEIIWIRSDGTAV 81
Query: 225 PIKSGSRFTETNNFGFVALDIMQCLPED------SGVYTCRAVNALGQAVTSGNLLVHSK 278
G R ++ L ED + VY C A N G ++ +
Sbjct: 82 GDVPGLRQISSDG----KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHV---- 133
Query: 279 KSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338
A + + HV +A +
Sbjct: 134 --------------------------------RAVVAQYYEADVNKEHVIRGNSAVIKCL 161
Query: 339 LIP-VGDSKLKVTWLRNGVPI-----QASNRVSTMHDFGYVALNFKYTYPEDS-GTYTCR 391
+ V D V+W + + + + L+ + PED +Y CR
Sbjct: 162 IPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPEDGYKSYQCR 218
Query: 392 AVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSF 451
+ L S + + + + + T P
Sbjct: 219 TKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP 278
Query: 452 TVQ-LNGPTELVEGEGTIITDTQHPKGLE-KIRK--LEDT------------EPHKRPEV 495
+ + ++ D I+ +ED+ +
Sbjct: 279 VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338
Query: 496 DDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT 555
A V+ G+ A F+C+ G+P V W ++ K + S +
Sbjct: 339 TVTA---PLSAKIDPPTQT-VDFGRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSESVLR 392
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
+ V+ ED+G+Y C N A +A +K+
Sbjct: 393 ----------IESVKKEDKGMYQCFVRNDRESAEASAELKL------------------- 423
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
+++ P+ Q + G S C G+PT W ++
Sbjct: 424 --------------GGRFDPPVIRQAFQ-EETMEPGPSVFLKCVAG--GNPTPEISWELD 466
Query: 676 GVELKMGSRFHV-----QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
G ++ R+ V + L+IT D G+Y C A ++ G A S L V
Sbjct: 467 GKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526
Query: 731 KSDIVS 736
I
Sbjct: 527 LPYIRQ 532
Score = 154 bits (391), Expect = 4e-39
Identities = 55/361 (15%), Positives = 98/361 (27%), Gaps = 89/361 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ + + + C + + W ++ R + I + + + G L I
Sbjct: 530 IRQMEKKA-IVAGETLIVTCPVA--GYPIDSIVWERDNRALPINRKQKVFPN-G--TLII 583
Query: 113 ID-TIPEDSGTYTCRAVNLVGF-AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
+ D TYTC A N G+ A +Q
Sbjct: 584 ENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV-------------------------- 617
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
I + + + GQ C +P D + ++W + I
Sbjct: 618 -----------LPRIIPFAFEEGPAQVGQYLTLHCS-VPGGDLPLNIDWTLDGQAISEDL 665
Query: 231 RFTETNNFGFVA-LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGE 289
T + + L I +G +TC A N G + L V+
Sbjct: 666 GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV------------ 713
Query: 290 SLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKV 349
P + D A+ A E + G K +V
Sbjct: 714 -------------------------PPRWILEPTDKAFAQGSDAKVECKAD--GFPKPQV 746
Query: 350 TWLRNGVPIQASNRVSTMHDFGYVA---LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLF 406
TW + + D V L+ + G Y C A+N +G +++ +
Sbjct: 747 TWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMI 806
Query: 407 V 407
Sbjct: 807 S 807
Score = 116 bits (292), Expect = 5e-27
Identities = 48/414 (11%), Positives = 83/414 (20%), Gaps = 116/414 (28%)
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSR 434
+N + + A+ G ++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANP----------------------------- 31
Query: 435 FKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIIT----------------DTQHPKGL 478
+ P F + + G I D +
Sbjct: 32 -------PDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDV 84
Query: 479 EKIRKLED--------TEPHKRPEVDDNAT---------------------KQRPVFTKP 509
+R++ + +
Sbjct: 85 PGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEAD 144
Query: 510 LQNIDAVEEGKNAHFSCRLIP-VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL-- 566
+ V G +A C + V D V W +E+ + +L
Sbjct: 145 VNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI 203
Query: 567 SHVRAED-EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPM 625
V ED Y C+ + L ++ K +
Sbjct: 204 REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI------------------------- 238
Query: 626 PQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF 685
EP + + + C G P F W+
Sbjct: 239 -TEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--GYPVPVFRWYKFIEGTTRKQAV 295
Query: 686 HVQHDFGYV--TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+ V TL I V DSG Y+C N G T L V + +
Sbjct: 296 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID 349
Score = 77.3 bits (190), Expect = 1e-14
Identities = 26/185 (14%), Positives = 47/185 (25%), Gaps = 45/185 (24%)
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
M++ + R + ++ A A G A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAA------------------------------- 29
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF-VNGVELKMG 682
P+ + P+F + T + A +C+ G+P W +G +
Sbjct: 30 ---NPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKAS--GNPMPEIIWIRSDGTAVGDV 84
Query: 683 SRFHVQHDFGYVTLDITKCVPAD------SGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
G L D + VY C A N+ G +S +
Sbjct: 85 PGLRQISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE 142
Query: 737 ESLQP 741
+
Sbjct: 143 ADVNK 147
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 217 bits (554), Expect = 2e-60
Identities = 89/744 (11%), Positives = 180/744 (24%), Gaps = 192/744 (25%)
Query: 63 RERGHAHFECKLEPVTDSNLKV---EWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPED 119
+ C + SNL V + R V G+R G I +
Sbjct: 141 NKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISWDSKKG---FTIPSYMISY 194
Query: 120 SGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEET 179
+G C A + + +
Sbjct: 195 AGMVFCEAKINDESYQSIMYIV----------------------------------VVVG 220
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS--------R 231
+ + E+ G++ C + + W + + + +
Sbjct: 221 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 280
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
L I D G+YTC A + L S + VH K +
Sbjct: 281 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV---------- 330
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
+ + + A+ +G ++ W
Sbjct: 331 ------------------------AFGSGMESLVEATVGERVRIPAK--YLGYPPPEIKW 364
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
+NG+P+++++ + H L D+G YT N + + S + +
Sbjct: 365 YKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV 419
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFK---------------------RKEEEEVEVTQQPS 450
Q+ ++ + T E V+
Sbjct: 420 PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNP 479
Query: 451 FTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEV-------------DD 497
+ + E +G I + +E K T + V
Sbjct: 480 YPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG 539
Query: 498 NAT-----KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRN--------- 543
+ P T E ++ C + W++
Sbjct: 540 ERVISFHVTRGPEITLQPD--MQPTEQESVSLWCT--ADRSTFENLTWYKLGPQPLPIHV 595
Query: 544 -----------EKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
+ + ++ + + + M+L + +D+G Y+C A + +
Sbjct: 596 GELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV 655
Query: 593 SMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQ 652
++ P T L G+
Sbjct: 656 VRQLTVLE--------------------------------RVAPTITGNLE-NQTTSIGE 682
Query: 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712
S C G+P + WF + L S ++ L I + D G+Y C+
Sbjct: 683 SIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQ 738
Query: 713 AINRAGEAVSSTSLKVKSKSDIVS 736
A + G A ++ + +
Sbjct: 739 ACSVLGCAKVEAFFIIEGAQEKTN 762
Score = 191 bits (485), Expect = 4e-51
Identities = 90/588 (15%), Positives = 177/588 (30%), Gaps = 102/588 (17%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT--------IGHRFRPIHD 104
V P L C + + W + +
Sbjct: 227 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 286
Query: 105 FGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYL 164
L I D G YTC A + + + ++ +
Sbjct: 287 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV---------------- 330
Query: 165 EDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHN 222
+ E G+R + P +++W+ N
Sbjct: 331 -------------------AFGSGMESLVEATVGERVRIPAKYLGYP----PPEIKWYKN 367
Query: 223 NVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG--NLLVHSKKS 280
+P++S + L IM+ D+G YT N + + S +L+V+
Sbjct: 368 GIPLESNHTIKAGHV-----LTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQ 422
Query: 281 IQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAP----VFTQPMRDIHVAENQAAHFE 336
I + +S + + G T + TV P + + A +
Sbjct: 423 IGEK----SLISPVDSYQYGT---TQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVS 475
Query: 337 ARLIPVGDSKLKVTWLRNGVPIQAS-NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNE 395
+ V + G I+ + N+ + + S Y C AVN+
Sbjct: 476 VTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNK 535
Query: 396 LGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE--------DTSRFKRKEEEEVEVTQ 447
+G + V + L + Q+ +L + + + + + +
Sbjct: 536 VGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHV 595
Query: 448 QPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIR--KLED----------------TEP 489
T L + T+ +++ + + +++ L+D
Sbjct: 596 GELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV 655
Query: 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED 549
++ V + + P T L+N G++ SC G+P ++ WF++ + L +
Sbjct: 656 VRQLTVLE---RVAPTITGNLENQ-TTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVE 709
Query: 550 SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
S I K + + VR EDEG+Y C+A + LG A A I+
Sbjct: 710 DSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 182 bits (463), Expect = 3e-48
Identities = 78/655 (11%), Positives = 159/655 (24%), Gaps = 134/655 (20%)
Query: 115 TIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGE 174
+ + C +L
Sbjct: 4 KVLLAVALWLCVETRAASVGLPSVSLD--------------------------------- 30
Query: 175 YIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE 234
P + IK CR + W +N + TE
Sbjct: 31 --------LPRLSIQKDILTIKANTTLQITCRGQR----DLDWLWPNNQSGSEQRVEVTE 78
Query: 235 TNNFGFVA-LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSR 293
++ F L I + + D+G Y C +V + + I +
Sbjct: 79 CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIAS---------- 128
Query: 294 LQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR 353
+ I +N+ +
Sbjct: 129 ----------------------VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP 166
Query: 354 NGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASL 413
+ NR+S G+ ++ +G C A + + V +
Sbjct: 167 EKRFVPDGNRISWDSKKGFTIPSYM---ISYAGMVFCEAKINDESYQSIMYIVVVVGYRI 223
Query: 414 QLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQ 473
+ + ++ + + P+ + + + D +
Sbjct: 224 YDVVLSPSHGIELS-VGEKLVL----NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 474 HPKGLEKIRKLEDTEPHKRPEVDD------NAT----------------KQRPVFTKPLQ 511
G E ++K T D A+ K F ++
Sbjct: 279 TQSGSE-MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGME 337
Query: 512 NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571
++ G+ + +G P +++W++N PLE + I H + + V
Sbjct: 338 SLVEATVGERVRIPAK--YLGYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSE 390
Query: 572 EDEGIYICKATNALGEAVTTASM--------KIKTKAGLQLETQHPEGLKKIQELEQPAS 623
D G Y TN + + + + +I K+ + + G Q L
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG--TTQTLTCTVY 448
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
+P P E S + E F G ++++
Sbjct: 449 AIPP-PH------HIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNK 501
Query: 684 -RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+F + + S +Y C+A+N+ G S V +I +
Sbjct: 502 NQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQ 556
Score = 178 bits (451), Expect = 8e-47
Identities = 83/764 (10%), Positives = 168/764 (21%), Gaps = 222/764 (29%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA-L 110
++ K I ++ C+ + +L W N D + L
Sbjct: 33 RLSIQKDILTIKANTTLQITCRGQR----DLDWLWPNNQSGSEQRVEVTECSDGLFCKTL 88
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I I D+G Y C + + +Q S I
Sbjct: 89 TIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFI---------------------- 126
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
+ ++ T + + C + N + + G+
Sbjct: 127 -----ASVSDQHGVVYIT------ENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
R + + GF I + +G+ C A + ++V I
Sbjct: 176 RISWDSKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI--------- 223
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
V P I ++ + + +
Sbjct: 224 ------------------------YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259
Query: 351 WLRNGVPIQASNRVS--------TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
W Q V+ + L D G YTC A + L S
Sbjct: 260 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 319
Query: 403 STLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQ--LNG--- 457
+ + V K + + E+ ++ + R + P ++ NG
Sbjct: 320 TFVRVHEKPFVAFGSGMESLVEATVG--ERVRI------PAKYLGYPPPEIKWYKNGIPL 371
Query: 458 -PTELVEGEGT-IITDTQHPKGLEKIRKLED--------------TEPHKRPEVDDNATK 501
++ I + D + +
Sbjct: 372 ESNHTIKAGHVLTIMEVS----------ERDTGNYTVILTNPISKEKQSHVVSLVVYV-- 419
Query: 502 QRPVFTKP--LQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPL----------- 547
P + + +D+ + G +C + P + W+ +
Sbjct: 420 -PPQIGEKSLISPVDSYQYGTTQTLTCTVY--AIPPPHHIHWYWQLEEECANEPSQAVSV 476
Query: 548 ----------------------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL 585
+ ++ L A +Y C+A N +
Sbjct: 477 TNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKV 536
Query: 586 GEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGT 645
G S + P T L
Sbjct: 537 GRGERVISFHVT------------------------------------RGPEIT--LQPD 558
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL--------------------KMGSRF 685
+ E +S C W+ G + K+ +
Sbjct: 559 MQPTEQESVSLWCTA--DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATM 616
Query: 686 HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ +++ D G Y+C A +R + ++
Sbjct: 617 FSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLT 660
Score = 160 bits (405), Expect = 6e-41
Identities = 58/523 (11%), Positives = 115/523 (21%), Gaps = 117/523 (22%)
Query: 245 IMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQR 304
+ + ++ C A + S +L
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSL------------------------------- 29
Query: 305 TSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV 364
P + + + N R G L W N + V
Sbjct: 30 ---------DLPRLSIQKDILTIKANTTLQITCR----GQRDLDWLWPNNQSGSEQRVEV 76
Query: 365 STMHDFGYVA-LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAAL 423
+ D + L D+G Y C +V + + + +
Sbjct: 77 TECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVV 136
Query: 424 QKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIR- 482
+N T ++ V I D K I
Sbjct: 137 YITENKNKTVVI----PCLGSISNLNVSLCARYPEKRFVPDGNRISWD---SKKGFTIPS 189
Query: 483 -KLEDT------------EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLI 529
+ + + + + G+ +C
Sbjct: 190 YMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 249
Query: 530 PVGDPTLKVEWFRNEKPLEDSSRI--------TTKHDFGYVAMDLSHVRAEDEGIYICKA 581
+ + W + + ++ + + V D+G+Y C A
Sbjct: 250 TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 309
Query: 582 TNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641
++ L + +++ K + +
Sbjct: 310 SSGLMTKKNSTFVRVHEKPFVAFGSGMES------------------------------- 338
Query: 642 LTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKC 701
E G+ + +G P +W+ NG+ L+ H L I +
Sbjct: 339 ---LVEATVGERVRIPAKY--LGYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEV 388
Query: 702 VPADSGVYMCKAINRAGEAVSSTS--LKVKSKSDIVSESLQPD 742
D+G Y N + S L V I +SL
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISP 431
Score = 134 bits (339), Expect = 9e-33
Identities = 43/362 (11%), Positives = 87/362 (24%), Gaps = 58/362 (16%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ E E A P + ++ + ++F I
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
++ S Y C AVN VG E + I + ++ L +
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA 573
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
+ T + L + W N +
Sbjct: 574 ----------DRSTFENLTWYKLGPQPLPIHVGE----LPTPVCKNLDTLWKLNATMFSN 619
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288
+ +++ +D G Y C A + + +
Sbjct: 620 STNDILI-------MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL---------- 662
Query: 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK 348
AP T + + + ++ G+ +
Sbjct: 663 -----------------------ERVAPTITGNLENQTTSIGESIEVSCTAS--GNPPPQ 697
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ W ++ + + + L + ED G YTC+A + LG A + +E
Sbjct: 698 IMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Query: 409 SK 410
Sbjct: 756 GA 757
Score = 107 bits (267), Expect = 5e-24
Identities = 43/268 (16%), Positives = 74/268 (27%), Gaps = 69/268 (25%)
Query: 49 IYYTVTKPKSIE-----NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGH------ 97
I + VT+ I E+ C + T N + W+K G H
Sbjct: 543 ISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFEN--LTWYKLGPQPLPIHVGELPT 600
Query: 98 --------------RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
+ +++ + +D G Y C A + Q
Sbjct: 601 PVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ-- 658
Query: 144 GSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203
+ AP T +L+N G+
Sbjct: 659 --------------------------------LTVLERVAPTITGNLENQTTSIGESIEV 686
Query: 204 ECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263
C + ++ WF +N + S + L I + ED G+YTC+A +
Sbjct: 687 SCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSV 742
Query: 264 LGQAVTSGNLLVHSKKSI----QTETQH 287
LG A ++ + +T H
Sbjct: 743 LGCAKVEAFFIIEGAQEKTNLERTHHHH 770
Score = 63.2 bits (153), Expect = 2e-10
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 9/127 (7%)
Query: 39 QENAKKKKNFIYYTVTKPKSIENLRE----RGH-AHFECKLEPVTDSNLKVEWFKNGRPV 93
++ + P NL G C + ++ WFK+ +
Sbjct: 650 KKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTAS--GNPPPQIMWFKDNETL 707
Query: 94 TIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQ 153
L I ED G YTC+A +++G A+V+A G+ +
Sbjct: 708 VEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLER 765
Query: 154 NETGLEQ 160
Sbjct: 766 THHHHHH 772
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 198 bits (506), Expect = 9e-58
Identities = 55/344 (15%), Positives = 103/344 (29%), Gaps = 58/344 (16%)
Query: 68 AHFECKLE---PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYT 124
+CK+ T + W+K+ R +++ + G L I + +D+G Y
Sbjct: 24 VLLKCKVANIKKET----HIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYE 77
Query: 125 CRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAP 184
+ G + + L E + E +
Sbjct: 78 VILKDDRGKDKSRLKLVDEA---------------------------FKELMMEVCKKIA 110
Query: 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALD 244
+ T LK EG + + +KV W HN I+ R + L
Sbjct: 111 LSATDLKIQSTAEGIQLYSFV---TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ 167
Query: 245 IMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQR 304
I + P D G Y + + +L + E Q + + ++
Sbjct: 168 INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK-------- 219
Query: 305 TSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV 364
++A V + + E +A + GD +V+WL+N + + +
Sbjct: 220 --------NRARVLGGLPDVVTIQEGKALNLTCN--VWGDPPPEVSWLKNEKALASDDHC 269
Query: 365 S-TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ DSG Y N+ G + T+ V
Sbjct: 270 NLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 154 bits (391), Expect = 7e-42
Identities = 45/241 (18%), Positives = 75/241 (31%), Gaps = 23/241 (9%)
Query: 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED 549
E+ K+ + L+ I + EG + LKV W N +
Sbjct: 96 EAFKELMMEVCKKIALSATDLK-IQSTAEGIQLYSFV---TYYVEDLKVNWSHNGSAIRY 151
Query: 550 SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHP 609
S R+ T + + ++ D+G Y+ + + T + + E
Sbjct: 152 SDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEF--- 208
Query: 610 EGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR 669
Q L+Q A + L I EG++ + C V GDP
Sbjct: 209 ------QRLKQAAIAEKNRA------RVLGGLPD-VVTIQEGKALNLTCNV--WGDPPPE 253
Query: 670 FEWFVNGVELKMGSRFHVQHDF-GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
W N L +++ + I ADSG Y N+ G S ++ V
Sbjct: 254 VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Query: 729 K 729
Sbjct: 314 F 314
Score = 150 bits (379), Expect = 3e-40
Identities = 40/275 (14%), Positives = 81/275 (29%), Gaps = 33/275 (12%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P F L E+ +C++ + T + W+ + I + + G
Sbjct: 7 GPHFVEYLSW-EVTGECNVLLKCKVANIKKET-HIVWYKDEREISVDEKHDFKD--GICT 62
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L I + +D+G+Y + G+ + L+ + K + E
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCK--------------- 107
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN 362
+ + ++ AE + + LKV W NG I+ S+
Sbjct: 108 -----------KIALSATDLKIQSTAEGIQLYSF---VTYYVEDLKVNWSHNGSAIRYSD 153
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAA 422
RV T + L P D G Y + + L ++ + Q
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 213
Query: 423 LQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG 457
+ + ++ + + T + G
Sbjct: 214 AAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWG 248
Score = 145 bits (368), Expect = 8e-39
Identities = 54/320 (16%), Positives = 97/320 (30%), Gaps = 41/320 (12%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKL-KVTWLRNGVPIQASNRVSTMHD 369
P F + + V + ++ K + W ++ I +
Sbjct: 3 DPFTGPHFVEYLSW-EVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDEKHDFKD- 58
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNL 429
G L +D+G Y ++ G+ + L E+ L ++ + AL +L
Sbjct: 59 -GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALS-ATDL 116
Query: 430 EDTSRFKRKEEEEVEVTQQPSFTVQ--LNG----PTE----LVEGEGT--IITDTQH--- 474
+ S + + V NG ++ V GE I +
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 176
Query: 475 ---------PKG-------LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEE 518
K L E +R + A K R L ++ ++E
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 236
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF-GYVAMDLSHVRAEDEGIY 577
GK + +C GDP +V W +NEK L K + ++ V D G Y
Sbjct: 237 GKALNLTCN--VWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKY 294
Query: 578 ICKATNALGEAVTTASMKIK 597
N G + ++ +
Sbjct: 295 GLVVKNKYGSETSDFTVSVF 314
Score = 139 bits (351), Expect = 1e-36
Identities = 32/195 (16%), Positives = 51/195 (26%), Gaps = 20/195 (10%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
KV W NG + R + + L I + P D G Y + + L
Sbjct: 139 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
+ Q + + +A + I+EG+ +
Sbjct: 199 QAYDEAYAEFQ-----------------RLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 241
Query: 203 FECRLIPVSDNTMKVEWFHNNVPIKSGSRFT-ETNNFGFVALDIMQCLPEDSGVYTCRAV 261
C D +V W N + S + I DSG Y
Sbjct: 242 LTCN--VWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 299
Query: 262 NALGQAVTSGNLLVH 276
N G + + V
Sbjct: 300 NKYGSETSDFTVSVF 314
Score = 136 bits (344), Expect = 1e-35
Identities = 31/249 (12%), Positives = 74/249 (29%), Gaps = 34/249 (13%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F + L V N C++ + W+++E+ + + K G
Sbjct: 8 PHFVEYLS--WEVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFKD--GICT 62
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
+ ++ +D GIY + G+ + + + + + E+ + +
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF------------KELMMEVCKKIA 110
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
+ + Q + V ++ W NG ++
Sbjct: 111 LSATDLKIQ----------------STAEGIQLYSFVT-YYVEDLKVNWSHNGSAIRYSD 153
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDA 743
R + L I + P D G Y+ + + + L ++ + +E +
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 213
Query: 744 WKKIQLKEA 752
+ A
Sbjct: 214 AAIAEKNRA 222
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 196 bits (500), Expect = 3e-57
Identities = 66/346 (19%), Positives = 120/346 (34%), Gaps = 88/346 (25%)
Query: 68 AHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
F+C VT + +K+ W K+ R + G ++ L ++ D+G YTC
Sbjct: 23 GTFKCH---VTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
Query: 127 AVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186
A N+ G A L ++E P F
Sbjct: 80 ASNVAGKDSCSAQLG----------------------------------VQE----PPRF 101
Query: 187 TTSLKNCE-IKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
L+ +K+ + +EC++ P +KV W+ + I+ S+F + L
Sbjct: 102 IKKLEPSRIVKQDEHTRYECKIGGSP----EIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
++ EDSG YTC A NA G A +S +L V
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-------------------------- 191
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
PVF + + + H E G +V+W ++ +++ +
Sbjct: 192 -----------PPVFRKKPHPVETLKGADVHLECE--LQGTPPFQVSWHKDKRELRSGKK 238
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
M + +++ D G Y C+A N++G ++ +++
Sbjct: 239 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 156 bits (396), Expect = 6e-43
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 41/234 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F ++D + G++ F C G +K+ W ++ + +
Sbjct: 6 PFFDLKPVSVD-LALGESGTFKCH--VTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
+ + V D G Y C A+N G+ +A + ++
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-------------------------- 96
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
E P F + L + + + + Y+C++ G P ++ W+ + E++ S
Sbjct: 97 ----------EPPRFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESS 144
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+F + L++ DSG Y C+A N AG A SSTSLKVK +
Sbjct: 145 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK 198
Score = 156 bits (396), Expect = 8e-43
Identities = 55/304 (18%), Positives = 109/304 (35%), Gaps = 46/304 (15%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
P F + +A ++ F+ G + +K+TW ++ I+
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCH--VTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE---- 430
L D+G YTC A N G+ S+ L V+ ++K++
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRF---------IKKLEPSRIVKQ 113
Query: 431 -DTSRFKRKEEEEVEVTQQPSFTVQ--LNGPTELVEGEGTIITDTQHPKGLEKIRKLEDT 487
+ +R+ E ++ P V + TE+ E ++ + LE + +
Sbjct: 114 DEHTRY------ECKIGGSPEIKVLWYKDE-TEIQESSKFRMSFVESVAVLE----MYNL 162
Query: 488 EPH-----------KRPEVDDNAT---KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD 533
+ + K+ PVF K ++ +G + H C G
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVE-TLKGADVHLECE--LQGT 219
Query: 534 PTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593
P +V W ++++ L + + ++ + +V + D G Y CKA+N +G S
Sbjct: 220 PPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGS 279
Query: 594 MKIK 597
+ +K
Sbjct: 280 ITLK 283
Score = 155 bits (394), Expect = 1e-42
Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 41/230 (17%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
++ P F K L+ V++ ++ + C++ G P +KV W+++E +++SS+
Sbjct: 96 QEPPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVES 153
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+++ ++ ED G Y C+A NA G A ++ S+K+K
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----------------------- 190
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
E P+F + E ++G H +C + G P + W + EL+
Sbjct: 191 -------------EPPVFRKKPH-PVETLKGADVHLECELQ--GTPPFQVSWHKDKRELR 234
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
G ++ + + ++ I AD G Y CKA N G S+ +K+
Sbjct: 235 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 147 bits (374), Expect = 6e-40
Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 42/228 (18%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P F + ++ G+ F+C +K+ W +N I+ G + T
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCH--VTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L +++ D+G YTC A N G+ S L V
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------------------------ 98
Query: 303 QRTSIIEDTVSQAPVFTQPMRD-IHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS 361
P F + + V +++ +E ++ G ++KV W ++ IQ S
Sbjct: 99 -------------PRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQES 143
Query: 362 NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
++ L EDSG YTC A N G A +S++L V+
Sbjct: 144 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
Score = 142 bits (360), Expect = 4e-38
Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 50/229 (21%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ K + +++ H +ECK+ KV W+K+ + +FR
Sbjct: 102 IKKLEPSRIVKQDEHTRYECKIGGSPEI------KVLWYKDETEIQESSKFRMSFVESVA 155
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
L++ + EDSG YTC A N G A +L+
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK--------------------------- 188
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
++E P+F E +G H EC +V W + ++S
Sbjct: 189 -------VKE----PPVFRKKPHPVETLKGADVHLECE--LQGTPPFQVSWHKDKRELRS 235
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
G ++ + ++ I+ D G Y C+A N +G G++ + +
Sbjct: 236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 85.2 bits (211), Expect = 2e-18
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P F + ++ G+S + C V G ++ W + E++ G + +
Sbjct: 4 APPFFDLKPV-SVDLALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
TL + K D+G Y C A N AG+ S L V+
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 98
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 199 bits (508), Expect = 6e-55
Identities = 91/698 (13%), Positives = 177/698 (25%), Gaps = 193/698 (27%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ + + ++ F C+ + W+ N + + + R + + L +
Sbjct: 114 SISSNNSKPVEDKDAVAFTCE---PETQDATYLWWVNNQSLPVSPRLQLSNGNR--TLTL 168
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
+ D+ +Y C N V L + Y
Sbjct: 169 FNVTRNDTASYKCETQNPVSARRSDSVILN-------------------VLYGP------ 203
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR 231
T S N + G+ + C S+ + WF N +S
Sbjct: 204 ------------DAPTISPLNTSYRSGENLNLSCH--AASNPPAQYSWFVNGTFQQSTQE 249
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
L I +SG YTC+A N+ +
Sbjct: 250 -----------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVT------------------ 280
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
I F V + A W
Sbjct: 281 ---------------TITVYAEPPKPFITSNNSNPVEDEDAVALT---CEPEIQNTTYLW 322
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESK 410
N + S R+ +D L D G Y C NEL + L V
Sbjct: 323 WVNNQSLPVSPRLQLSNDNRT--LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380
Query: 411 ASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVT------QQPSFTVQLNGPTELVEG 464
+ + + + ++ ++ ++G + +
Sbjct: 381 PDDPTISPSYTYYR--------------PGVNLSLSCHAASNPPAQYSWLIDG--NIQQH 424
Query: 465 EGTI-ITDTQHPKGLEKIRKLEDT------------EPHKRPEVDDNATKQRPVFTKPLQ 511
+ I++ +++ + + + P +
Sbjct: 425 TQELFISNIT----------EKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSN 474
Query: 512 NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571
N VE+ F+C P T W+ N + L S R+ + + L +V
Sbjct: 475 NSKPVEDKDAVAFTCE--PEAQNT-TYLWWVNGQSLPVSPRLQLSNGNRT--LTLFNVTR 529
Query: 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631
D Y+C N++ + + L+ + P+
Sbjct: 530 NDARAYVCGIQNSVSANRSD---------PVTLDVLYG-------------------PDT 561
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
P + + G + + C +P+ ++ W +NG+ +
Sbjct: 562 PIISPPDS-------SYLSGANLNLSCHS--ASNPSPQYSWRINGIPQQHTQ-------- 604
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L I K P ++G Y C N A +S +
Sbjct: 605 ---VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
Score = 176 bits (448), Expect = 7e-47
Identities = 94/714 (13%), Positives = 165/714 (23%), Gaps = 208/714 (29%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA----------------LD 111
P W+K R + L
Sbjct: 17 VLLLVHNLP--QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL 74
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
I + I D+G YT + E +AT Q
Sbjct: 75 IQNIIQNDTGFYTLHVIKSDLVNE-EATGQ------------------------------ 103
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR 231
+S + +++ F C W+ NN + R
Sbjct: 104 ----FRVYPELPKPSISSNNSKPVEDKDAVAFTCE---PETQDATYLWWVNNQSLPVSPR 156
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
+N L + D+ Y C N + + +L
Sbjct: 157 LQLSNGNRT--LTLFNVTRNDTASYKCETQNPVSARRSDSVIL----------------- 197
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAP-VFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
V P T + + + + + +
Sbjct: 198 -------------------NVLYGPDAPTISPLNTSYRSGENLNLSCH--AASNPPAQYS 236
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
W NG Q++ L +SG+YTC+A N
Sbjct: 237 WFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQAHNSDTGL--------NRT 277
Query: 411 ASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFT------------VQLNGP 458
+ E I + ++E+ V +T +P + ++
Sbjct: 278 TVTTITVYAEPPKPFITSNNSNPV---EDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPR 334
Query: 459 TELVEGEGT-IITDTQHPKGLEKIRKLEDT------------EPHKRPEVDDNATKQRPV 505
+L T + D H P V N
Sbjct: 335 LQLSNDNRTLTLLSVT----------RNDVGPYECGIQNELSVDHSDP-VILNVLYGPDD 383
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
T G N SC +P + W + + + +
Sbjct: 384 PTISPSYTY-YRPGVNLSLSCH--AASNPPAQYSWLIDGNIQQHTQELF----------- 429
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPM 625
+S++ ++ G+Y C+A N+ T I A
Sbjct: 430 ISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA------------------------- 464
Query: 626 PQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF 685
E P + + + + + + C T + W+VNG L + R
Sbjct: 465 --------ELPKPSISSNNSKPVEDKDAVAFTCEP--EAQNT-TYLWWVNGQSLPVSPRL 513
Query: 686 HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSES 738
+ + TL + D+ Y+C N S +L V D S
Sbjct: 514 QLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIIS 565
Score = 146 bits (370), Expect = 8e-37
Identities = 77/586 (13%), Positives = 132/586 (22%), Gaps = 160/586 (27%)
Query: 194 EIKEGQRAHFECRLIPVSDNTMKVEWF-----HNNVPIKSGSRFTETNNFGFVA------ 242
+ EG+ + + W+ N I T+ G
Sbjct: 10 NVAEGKEVLLLVH--NLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67
Query: 243 -----LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
L I + D+G YT + +
Sbjct: 68 YPNASLLIQNIIQNDTGFYTLHVIKSDLVNE----------------------------- 98
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
+ T V + A F W N
Sbjct: 99 -----EATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCE---PETQDATYLWWVNNQS 150
Query: 358 IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDT 417
+ S R+ + L D+ +Y C N + + S L
Sbjct: 151 LPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDS-------VIL---- 197
Query: 418 QNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEG----------EGT 467
N+ + + + GT
Sbjct: 198 ----------NVLYGPDAPTISPLNTSYRSGENLNLSCH-----AASNPPAQYSWFVNGT 242
Query: 468 IITDTQHPKGLEKIRKLED------------TEPHKRPEVDDNATKQRPVFTKPLQNIDA 515
TQ + I + T ++ + P N +
Sbjct: 243 FQQSTQELF-IPNITV-NNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNP 300
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
VE+ +C P T W+ N + L S R+ +D + L V D G
Sbjct: 301 VEDEDAVALTC--EPEIQNT-TYLWWVNNQSLPVSPRLQLSNDNRTLT--LLSVTRNDVG 355
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C N L + + L P P P Y
Sbjct: 356 PYECGIQNELSVDHSDPV--------------------ILNVLYGPDDP-TISPSYTY-- 392
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
G + C +P ++ W ++G +
Sbjct: 393 ------------YRPGVNLSLSCHAA--SNPPAQYSWLIDGNIQQHTQ-----------E 427
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
L I+ +SG+Y C+A N A +T + +++ S+
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS 473
Score = 124 bits (312), Expect = 1e-29
Identities = 45/358 (12%), Positives = 76/358 (21%), Gaps = 102/358 (28%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
T S R + C + + W +G L
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAAS--NPPAQYSWLIDGNIQQHTQE-----------L 428
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I + ++SG YTC+A N
Sbjct: 429 FISNITEKNSGLYTCQANNSASGHSRTTVKT----------------------------- 459
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
I + +S + +++ F C W+ N +
Sbjct: 460 -----ITVSAELPKPSISSNNSKPVEDKDAVAFTCE---PEAQNTTYLWWVNGQSLPVSP 511
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
R +N L + D+ Y C N++ + L
Sbjct: 512 RLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTL---------------- 553
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAP-VFTQPMRDIHVAENQAAHFEARLIPVGDSKLKV 349
V P D + + +
Sbjct: 554 --------------------DVLYGPDTPIISPPDSSYLSGANLNLSCH--SASNPSPQY 591
Query: 350 TWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+W NG+P Q + L P ++GTY C N S +
Sbjct: 592 SWRINGIPQQHTQV-----------LFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 112 bits (281), Expect = 8e-26
Identities = 63/452 (13%), Positives = 114/452 (25%), Gaps = 103/452 (22%)
Query: 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA--------- 374
+VAE + + +W + + +
Sbjct: 8 PFNVAEGKEVLLLVH--NLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGRE 65
Query: 375 -------LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQ 427
L + D+G YT + V +A+ Q E I
Sbjct: 66 IIYPNASLLIQNIIQNDTGFYTLHVIKSDL---------VNEEATGQFRVYPELPKPSIS 116
Query: 428 NLEDTSRFKRKEEEEVEVT-----QQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIR 482
+ ++++ V T Q ++ +N L +++ L +
Sbjct: 117 SNNSKPV---EDKDAVAFTCEPETQDATYLWWVNN-QSLPVSPRLQLSNGNRTLTLFNVT 172
Query: 483 KLEDT------------EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIP 530
+ DT V N T N G+N + SC
Sbjct: 173 R-NDTASYKCETQNPVSARRSDS-VILNVLYGPDAPTISPLNTS-YRSGENLNLSCH--A 227
Query: 531 VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590
+P + WF N + + + + ++ + G Y C+A N+
Sbjct: 228 ASNPPAQYSWFVNGTFQQSTQELF-----------IPNITVNNSGSYTCQAHNSDTGLNR 276
Query: 591 TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650
T I +P P ++ + +
Sbjct: 277 TTV-------------------TTITVYAEPPKPFITSNN--------------SNPVED 303
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
+ C T + W+VN L + R + +D TL + D G Y
Sbjct: 304 EDAVALTCEPE--IQNT-TYLWWVNNQSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYE 358
Query: 711 CKAINRAGEAVSST-SLKVKSKSDIVSESLQP 741
C N S L V D + S
Sbjct: 359 CGIQNELSVDHSDPVILNVLYGPDDPTISPSY 390
Score = 52.3 bits (125), Expect = 5e-07
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 13/95 (13%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
T + + + C ++ + + W NG P L
Sbjct: 561 TPIISPPDSSYLSGANLNLSCHSA--SNPSPQYSWRINGIPQQHTQV-----------LF 607
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSA 146
I P ++GTY C NL SA
Sbjct: 608 IAKITPNNNGTYACFVSNLATGRNNSIVKSITVSA 642
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 186 bits (474), Expect = 3e-53
Identities = 55/359 (15%), Positives = 102/359 (28%), Gaps = 56/359 (15%)
Query: 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDII 113
+ + +FEC + W K+ R +
Sbjct: 7 KEVVVNVDDDGVISLNFECD---KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFK 63
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173
D +D G Y+C + G A YL D+ + +R
Sbjct: 64 DLGMDDLGIYSCDVTDTDGIAS--------------------------SYLIDEEELKRL 97
Query: 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF- 232
+ + S EI E + F + +S N KV + N I G ++
Sbjct: 98 LALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYK 156
Query: 233 -TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
N G + + + + ED G YT + + ++ L+ K +Q E +
Sbjct: 157 MHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE----- 211
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVT 350
E Q P F + + V + ++ K +
Sbjct: 212 -------------FQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKV--ANIKKETHIV 255
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
W ++ I + L +D+G Y ++ G+ + L E+
Sbjct: 256 WYKDEREISVDEKHDFKDGIC--TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 142 bits (360), Expect = 8e-38
Identities = 43/318 (13%), Positives = 97/318 (30%), Gaps = 44/318 (13%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
P + + ++ + +FE K + +W ++ V + S R+
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECD---KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSR 434
+ FK +D G Y+C + G A + E K L L +++ +++
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 435 FK----RKEEEEVEVTQQPSFTVQLNGPTELVEGEGT-------------IITDTQ---- 473
+ R + +++ N E+ EG + Q
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNE-KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDE 178
Query: 474 --------------HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEG 519
H + + + + + KQ P F + L V
Sbjct: 179 GTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS--WEVTGE 236
Query: 520 KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579
N C+ + + W+++E+ + + K + ++ +D GIY
Sbjct: 237 CNVLLKCK-VANIKKETHIVWYKDEREISVDEKHDFKDGIC--TLLITEFSKKDAGIYEV 293
Query: 580 KATNALGEAVTTASMKIK 597
+ G+ + + +
Sbjct: 294 ILKDDRGKDKSRLKLVDE 311
Score = 140 bits (354), Expect = 5e-37
Identities = 42/237 (17%), Positives = 79/237 (33%), Gaps = 32/237 (13%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P + + N+D + + +F C P + W ++ EDS R+ +
Sbjct: 4 PFTKEVVVNVD-DDGVISLNFECD---KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
M + +D GIY C T+ G A + + + K L L E + P
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALS----------HEHKFPTV 109
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
P+ E EI+E + + + + N E+ G
Sbjct: 110 PVKSELA---------------VEILEKGQVRFWMQAE-KLSGNAKVNYIFNEKEIFEGP 153
Query: 684 RF--HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
++ H+ + G + + + K D G Y + + S+ L + E+
Sbjct: 154 KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 210
Score = 139 bits (352), Expect = 9e-37
Identities = 44/258 (17%), Positives = 94/258 (36%), Gaps = 27/258 (10%)
Query: 475 PKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP 534
G+ +++ E + + K V K ++ +E+G+ +
Sbjct: 80 TDGIASSYLIDEEELKRLLALSHE-HKFPTVPVKSELAVEILEKGQVRFWMQ--AEKLSG 136
Query: 535 TLKVEWFRNEKPLEDSSR--ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
KV + NEK + + + + + G + M + ++ EDEG Y + + +T
Sbjct: 137 NAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 196
Query: 593 SMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQ 652
+ +L++ A QE R+ + P F + L+ E+
Sbjct: 197 VLVGDVFK----------------KLQKEAEFQRQEWIRK-QGPHFVEYLS--WEVTGEC 237
Query: 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712
+ C+V + T W+ + E+ + + + TL IT+ D+G+Y
Sbjct: 238 NVLLKCKVANIKKET-HIVWYKDEREISVDEKHDFKDGIC--TLLITEFSKKDAGIYEVI 294
Query: 713 AINRAGEAVSSTSLKVKS 730
+ G+ S L ++
Sbjct: 295 LKDDRGKDKSRLKLVDEA 312
Score = 134 bits (339), Expect = 4e-35
Identities = 35/277 (12%), Positives = 74/277 (26%), Gaps = 34/277 (12%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P + N + +FEC + W + V + R +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECD---KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
+ +D G+Y+C + G A + K+ +
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLA-------------------- 99
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN 362
+ V + + + E F + KV ++ N I
Sbjct: 100 -----LSHEHKFPTVPVKSELAVEILEKGQVRFWMQ-AEKLSGNAKVNYIFNEKEIFEGP 153
Query: 363 R--VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNE 420
+ + + G + + + ED GTYT + + ++ L + LQ + + +
Sbjct: 154 KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQ 213
Query: 421 AALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG 457
+ F EV ++
Sbjct: 214 RQEWIRKQ---GPHFVEYLSWEVTGECNVLLKCKVAN 247
Score = 81.6 bits (201), Expect = 6e-17
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P +++ + S +++C P F W + V + R V+
Sbjct: 2 IDPFTKEVVVNVDD-DGVISLNFECDK---MTPKSEFSWSKDYVSTEDSPRLEVESKGNK 57
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ D G+Y C + G A S + + K
Sbjct: 58 TKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELK 95
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 162 bits (412), Expect = 3e-46
Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 42/232 (18%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSR--FTETN 236
TTQAP FT L++ + EG A FE +S +V WF + I + + +
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAH---ISGFPVPEVSWFRDGQVISTSTLPGVQISF 58
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQ 296
+ G L I +SG Y+ +A N GQA ++ LLV ++ +
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA---------------- 102
Query: 297 LEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGV 356
P F Q ++ + V + + R G V + R+G
Sbjct: 103 ------------------PPNFVQRLQSMTVRQGSQVRLQVR--VTGIPTPVVKFYRDGA 142
Query: 357 PIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
IQ+S + +L YPEDSGTY+ A N +G A +++ L V+
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 154 bits (392), Expect = 2e-43
Identities = 61/232 (26%), Positives = 93/232 (40%), Gaps = 41/232 (17%)
Query: 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559
T Q P FT+PLQ++ V EG A F + G P +V WFR+ + + S+ + F
Sbjct: 2 TTQAPTFTQPLQSVV-VLEGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISF 58
Query: 560 --GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
G + + V + G Y KATN G+A +TA + +K +
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET----------------- 101
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV 677
P F Q L + +G RV G PT +++ +G
Sbjct: 102 ----------------APPNFVQRLQSM-TVRQGSQVRLQVRV--TGIPTPVVKFYRDGA 142
Query: 678 ELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
E++ F + + +L I + P DSG Y A N G A S+ L V+
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 138 bits (350), Expect = 1e-37
Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 52/231 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFG 106
+S+ + E A FE + P +V WF++G+ ++ + G
Sbjct: 9 TQPLQSVV-VLEGSTATFEAHISGFPVP------EVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
L I +SG Y+ +A N G A A L
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV------------------------ 97
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVP 225
+ T P F L++ +++G + + R V+ T V+++ +
Sbjct: 98 -----------KAETAPPNFVQRLQSMTVRQGSQVRLQVR---VTGIPTPVVKFYRDGAE 143
Query: 226 IKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
I+S F + +L I + PEDSG Y+ A N++G+A ++ LLV
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 89.8 bits (223), Expect = 1e-20
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR--VSTMHD 369
+QAP FTQP++ + V E A FEA + G +V+W R+G I S V
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISFS 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
G L +SG Y+ +A N G+A +++ L V+++ +
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102
Score = 85.2 bits (211), Expect = 4e-19
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSR--FHVQHDF 691
+ P FTQ L ++EG +A ++ + G P WF +G + + +
Sbjct: 4 QAPTFTQPLQSV-VVLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732
G L I A+SG Y KA N +G+A S+ L VK+++
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET 101
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 159 bits (404), Expect = 7e-45
Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 23/227 (10%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+ L+ I + EG + LKV W N + S R+ T +
Sbjct: 4 IALSATDLK-IQSTAEG--IQLYSF-VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI 59
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ ++ D+G Y+ + + T + + + E + Q L+Q A
Sbjct: 60 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA---------YDEAYAEFQRLKQAA 110
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
+ L I EG++ + C V GDP W N L
Sbjct: 111 IAEKNRA------RVLGGLPD-VVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALAQT 161
Query: 683 SRFHVQHDF-GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+++ + I ADSG Y N+ G S ++ V
Sbjct: 162 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 153 bits (388), Expect = 9e-43
Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 22/226 (9%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ T LK EG + + +KV W HN I+ R + L
Sbjct: 5 ALSATDLKIQSTAEGIQ--LYSF-VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
I + P D G Y + + +L + E Q + + ++
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK------- 114
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
++A V + + E +A + + GD +V+WL+N + ++
Sbjct: 115 ---------NRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALAQTDH 163
Query: 364 VSTMHDFGYVA-LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ + G A DSG Y N+ G + T+ V
Sbjct: 164 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 141 bits (357), Expect = 2e-38
Identities = 33/211 (15%), Positives = 53/211 (25%), Gaps = 23/211 (10%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
+ +LKV W NG + R + + L I + P D G Y
Sbjct: 20 IQLYSFV-TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 78
Query: 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187
+ + L + Q + + +A +
Sbjct: 79 FDGKTGHQKTVDLSGQAYDEAYAEFQ-----------------RLKQAAIAEKNRARVLG 121
Query: 188 TSLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETNNF-GFVALDI 245
I+EG+ + C V D +V W N + I
Sbjct: 122 GLPDVVTIQEGKALNLTCN---VWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTI 178
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
DSG Y N G + + V
Sbjct: 179 NGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 88.0 bits (218), Expect = 6e-20
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 485 EDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE 544
E +R + A K R L ++ ++EGK + +C + GDP +V W +NE
Sbjct: 98 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNE 155
Query: 545 KPLEDSSRITTKHDFGYVA-MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
K L + K + G A ++ V D G Y N G + ++ +
Sbjct: 156 KALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 85.7 bits (212), Expect = 4e-19
Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 21/150 (14%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
+ ++ AE + + LKV W NG I+ S+RV T + L
Sbjct: 5 ALSATDLKIQSTAEGIQLYSF---VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRF 435
P D G Y + + L ++ E + F
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYD------------------EAYAEF 103
Query: 436 KRKEEEEVEVTQQPSFTVQLNGPTELVEGE 465
+R ++ + + L + EG+
Sbjct: 104 QRLKQAAIAEKNRARVLGGLPDVVTIQEGK 133
Score = 83.4 bits (206), Expect = 2e-18
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 644 GTSEIMEGQSAHYDCRV--------VPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
G+S + V ++ W NG ++ R +
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 60
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDA 743
L I + P D G Y+ + + + L ++ + +E +
Sbjct: 61 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 108
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 163 bits (415), Expect = 3e-44
Identities = 73/445 (16%), Positives = 129/445 (28%), Gaps = 79/445 (17%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFE--ARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
V + PV ++ EN E +K +W ++G + +
Sbjct: 2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGND---QGVKYSWKKDGKSYNWQEHNAALR 58
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT-SSTLFVESKASLQLDTQNEAALQ--- 424
+L F D G Y C A G A + + + T + ++
Sbjct: 59 KDEG-SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRP 117
Query: 425 --------------KIQ---NLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEG-EG 466
I L + + +T P + T+
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177
Query: 467 TIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSC 526
+ ++ E++ +E K D++ K PV +++ + G C
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYE--IKGVTKDNSGYKGEPVPQYVSKDM-MAKAGDVTMIYC 234
Query: 527 RLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584
+ +P +F+N K + + RIT + + EDEG+Y C+ N
Sbjct: 235 --MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG 292
Query: 585 LGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLT 643
+G+ + + + P + Q
Sbjct: 293 VGKPQKHSLKLTV------------------------------------VSAPKYEQKPE 316
Query: 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP 703
+ +GQ C+V G P W N L G R V L I
Sbjct: 317 KVIVVKQGQDVTIPCKVT--GLPAPNVVWSHNAKPLS-GGRATVTDS----GLVIKGVKN 369
Query: 704 ADSGVYMCKAINRAGEAVSSTSLKV 728
D G Y C+A N G+ T ++V
Sbjct: 370 GDKGYYGCRATNEHGDKYFETLVQV 394
Score = 137 bits (346), Expect = 3e-35
Identities = 57/368 (15%), Positives = 90/368 (24%), Gaps = 79/368 (21%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+P + RE EC +E D +K W K+G+ + +L
Sbjct: 10 KDQPAEVL-FRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRKDEG-SLVF 66
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
+ D G Y C A G A +
Sbjct: 67 LRPQASDEGHYQCFAETPAGVASSRV---------------------------------- 92
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS---- 228
I T EG+ +C +P + + W
Sbjct: 93 ---ISFRKTYLIASPAKTHEKTPIEGRPFQLDCV-LPNAYPKPLITWKKRLSGADPNADV 148
Query: 229 ---GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTET 285
R T + + + D Y C A NA
Sbjct: 149 TDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEY----------- 197
Query: 286 QHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS 345
+ + PV +D+ + +
Sbjct: 198 ---------------EIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYC--MYGSNP 240
Query: 346 KLKVTWLRNGVPIQASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
+ +NG + + R++ + L FK T PED G YTC N +G+ S
Sbjct: 241 MGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 300
Query: 404 -TLFVESK 410
L V S
Sbjct: 301 LKLTVVSA 308
Score = 135 bits (342), Expect = 1e-34
Identities = 63/449 (14%), Positives = 112/449 (24%), Gaps = 87/449 (19%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
+ P+ +E EC I +D +K W +
Sbjct: 2 PVDKYPVLKDQPAEVLFRENNPTVLECI-IEGNDQGVKYSWKKDGKSYNWQEH-NAALRK 59
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
+L ++ D G Y C A G A SR+
Sbjct: 60 DEGSLVFLRPQASDEGHYQCFAETPAGVAS-----------------------SRVISF- 95
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ + E + + +P K +TW +
Sbjct: 96 ------------RKTYLIASPAKTHEKTPIEGRPFQLDCV-LPNAYPKPLITWKKRLSGA 142
Query: 359 QASN-------RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
+ R++ D D Y C A N + E K
Sbjct: 143 DPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLV-EYEIKG 201
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG-PT----------E 460
+ ++ + +D + P +
Sbjct: 202 VTKDNSGYKGEPVPQYVSKDMM---------AKAGDVTMIYCMYGSNPMGYPNYFKNGKD 252
Query: 461 LVEGEGTIITDTQHPKGLE-KIR--KLEDT-----EPHKRPEVDDNATKQRPVFTKP--- 509
+ IT G + ED E + + V + P
Sbjct: 253 VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYE 312
Query: 510 --LQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS 567
+ + V++G++ C+ G P V W N KPL T + +
Sbjct: 313 QKPEKVIVVKQGQDVTIPCK--VTGLPAPNVVWSHNAKPLSGGRATVTDS-----GLVIK 365
Query: 568 HVRAEDEGIYICKATNALGEAVTTASMKI 596
V+ D+G Y C+ATN G+ +++
Sbjct: 366 GVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 133 bits (336), Expect = 7e-34
Identities = 74/366 (20%), Positives = 94/366 (25%), Gaps = 86/366 (23%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-------GHRFRPIHDF 105
K E +C L P + W K R D
Sbjct: 104 PAKTHEKT-PIEGRPFQLDCVL-PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG 161
Query: 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165
+ D Y C A N EV E +
Sbjct: 162 NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE-----------------YEIKGVTK 204
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNV 224
D S Y+ P+ K+ K G C N M +F N
Sbjct: 205 DNSGYKG----------EPVPQYVSKDMMAKAGDVTMIYC---MYGSNPMGYPNYFKNGK 251
Query: 225 PIKSGS--RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQ 282
+ R T N L LPED GVYTC N +G+ L
Sbjct: 252 DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL-------- 303
Query: 283 TETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ-PMRDIHVAENQAAHFEARLIP 341
TV AP + Q P + I V + Q +
Sbjct: 304 ----------------------------TVVSAPKYEQKPEKVIVVKQGQDVTIPCK--V 333
Query: 342 VGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401
G V W N P+ T+ D G L K D G Y CRA NE G+
Sbjct: 334 TGLPAPNVVWSHNAKPLSGGRA--TVTDSG---LVIKGVKNGDKGYYGCRATNEHGDKYF 388
Query: 402 SSTLFV 407
+ + V
Sbjct: 389 ETLVQV 394
Score = 108 bits (270), Expect = 3e-25
Identities = 37/238 (15%), Positives = 64/238 (26%), Gaps = 40/238 (16%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-------EDSSRITTK 556
EG+ C +P P + W + + RIT
Sbjct: 101 IASPAKTHEKT-PIEGRPFQLDCV-LPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG 158
Query: 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQ 616
D ++ D Y+C A NA + + +++
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD-------EEVVLVEYEIK----------- 200
Query: 617 ELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG 676
+ ++ +P+ + G C +P +F NG
Sbjct: 201 -------GVTKDNSGYKGEPVPQYVSKDMM-AKAGDVTMIYCMYG--SNPMGYPNYFKNG 250
Query: 677 VELKMGS--RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVKSK 731
++ R + L +P D GVY C+ N G+ S L V S
Sbjct: 251 KDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA 308
Score = 99.6 bits (248), Expect = 2e-22
Identities = 48/199 (24%), Positives = 65/199 (32%), Gaps = 53/199 (26%)
Query: 84 VEWFKNGRPV--TIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATL 140
+FKNG+ V R + L T+PED G YTC N VG + L
Sbjct: 244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 303
Query: 141 QCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNC-EIKEGQ 199
T AP + + +K+GQ
Sbjct: 304 --------------------------------------TVVSAPKYEQKPEKVIVVKQGQ 325
Query: 200 RAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
C++ +P V W HN P+ SG R T T++ L I D G Y
Sbjct: 326 DVTIPCKVTGLP----APNVVWSHNAKPL-SGGRATVTDS----GLVIKGVKNGDKGYYG 376
Query: 258 CRAVNALGQAVTSGNLLVH 276
CRA N G + V+
Sbjct: 377 CRATNEHGDKYFETLVQVN 395
Score = 94.6 bits (235), Expect = 9e-21
Identities = 39/252 (15%), Positives = 62/252 (24%), Gaps = 54/252 (21%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLE--DSSRITTKH 557
+ PV + E C G+ +K W ++ K + + K
Sbjct: 4 DKYPVLKDQPAEVL-FRENNPTVLECI--IEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
+ V +A DEG Y C A G A + +
Sbjct: 61 EGSLV---FLRPQASDEGHYQCFAETPAGVASS-------RVISFRKT------------ 98
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV 677
+ +EG+ DC +P P W
Sbjct: 99 ----------------YLIASPAKTHEKT-PIEGRPFQLDCV-LPNAYPKPLITWKKRLS 140
Query: 678 ELKM-------GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSSTSLKVK 729
R D +TK +D Y+C A N A + V ++K
Sbjct: 141 GADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIK 200
Query: 730 SKSDIVSESLQP 741
+ S
Sbjct: 201 GVTKDNSGYKGE 212
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 160 bits (405), Expect = 7e-43
Identities = 75/456 (16%), Positives = 126/456 (27%), Gaps = 109/456 (23%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKL-KVTWLRNGVPIQAS--NRVSTM 367
++ F D D + + W ++G+ + +R +
Sbjct: 17 GGRRSLHFVSEPSDAVTMRGGNVLLNCS--AESDRGVPVIKWKKDGLILALGMDDRKQQL 74
Query: 368 HDFGYV--ALNFKYTYPEDSGTYTCRAVNELGEAVTSST--LFVESKASLQLDTQNEAAL 423
+ + + + D G Y C A ++ S T + V T++ A
Sbjct: 75 PNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAF 134
Query: 424 QKIQNLEDTSRFK-------------RKEEEEVEVTQQ-PSFTVQLNGPTELVEGEGTII 469
DT K +K ++++ V +G L I
Sbjct: 135 M-----GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG--AL------QI 181
Query: 470 TDTQHPKGLEKIRKLEDT------------EPHKRPE----VDDNATKQRPVFTKPLQNI 513
+ Q D+ + D ++ F + N+
Sbjct: 182 SRLQ----------PGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231
Query: 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAED 573
EGK+A C G P W R E+ ++ S+ + + +S+V +D
Sbjct: 232 -IAIEGKDAVLECC--VSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDD 286
Query: 574 EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQY 633
G Y C T +A + +
Sbjct: 287 SGTYTCVVTYKNENISASAELTVL------------------------------------ 310
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P F + E ++C V G P W NG + F +
Sbjct: 311 VPPWFLNHPSNLY-AYESMDIEFECAVS--GKPVPTVNWMKNGDVVIPSDYFQIVGG-S- 365
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L I V +D G Y C A N AG A SS L V
Sbjct: 366 -NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 158 bits (400), Expect = 3e-42
Identities = 68/363 (18%), Positives = 99/363 (27%), Gaps = 88/363 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+++ +SI +C++ P+ + W KN + + + AL
Sbjct: 125 LSQTESIT-AFMGDTVLLKCEVIGDPM----PTIHWQKNQQDLNPIPGDSRVVVLPSGAL 179
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
I P DSG Y C A N A ++ G+
Sbjct: 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGL--------------------- 218
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKS 228
+ F N EG+ A EC VS W I+
Sbjct: 219 -----------HRQLYFLQRPSNVIAIEGKDAVLECC---VSGYPPPSFTWLRGEEVIQL 264
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288
S+ L I +DSG YTC S L V
Sbjct: 265 RSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV----------- 311
Query: 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK 348
P F +++ E+ FE G
Sbjct: 312 --------------------------PPWFLNHPSNLYAYESMDIEFECA--VSGKPVPT 343
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
V W++NG + S+ + L D G Y C A NE G A +S+ L V
Sbjct: 344 VNWMKNGDVVIPSDYFQIVGG-S--NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Query: 409 SKA 411
A
Sbjct: 401 KPA 403
Score = 155 bits (394), Expect = 2e-41
Identities = 67/444 (15%), Positives = 115/444 (25%), Gaps = 85/444 (19%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS----RFTETNN 237
++ F + + G C ++W + + + G + +
Sbjct: 20 RSLHFVSEPSDAVTMRGGNVLLNCS-AESDRGVPVIKWKKDGLILALGMDDRKQQLPNGS 78
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
+ + D G+Y C A ++ S V
Sbjct: 79 LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV---------------------- 116
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
V+ F I + +GD + W +N
Sbjct: 117 -------------MVAGPLRFLSQTESITAFMGDTVLLKCE--VIGDPMPTIHWQKNQQD 161
Query: 358 IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKASLQLD 416
+ S + AL P DSG Y C A N + + + S L
Sbjct: 162 LNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQ 221
Query: 417 TQNEAALQKIQNLEDTS-RFKRKEEEEVEVTQQPSFTV---------QLNGPTELVEGEG 466
+ +E E V+ P + QL + G
Sbjct: 222 LYFLQRPSNVIAIEGKDAVL------ECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS 275
Query: 467 T-IITDTQHPKGLEKIRKLEDT-----EPH-KRPEVDDNAT---KQRPVFTKPLQNIDAV 516
+I++ +D+ K + +A P F N+
Sbjct: 276 NLLISNVT----------DDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLY-A 324
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
E + F C G P V W +N + S + + V DEG
Sbjct: 325 YESMDIEFECA--VSGKPVPTVNWMKNGDVVIPSDYFQIVGG-S--NLRILGVVKSDEGF 379
Query: 577 YICKATNALGEAVTTASMKIKTKA 600
Y C A N G A ++A + + A
Sbjct: 380 YQCVAENEAGNAQSSAQLIVPKPA 403
Score = 133 bits (337), Expect = 7e-34
Identities = 62/367 (16%), Positives = 96/367 (26%), Gaps = 90/367 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR----PIHDFGYV 108
V++P G+ C E ++W K+G + +G R P
Sbjct: 25 VSEPSDAV-TMRGGNVLLNCSAESDRGV-PVIKWKKDGLILALGMDDRKQQLPNGSLLIQ 82
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVG--FAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
+ D G Y C A A + +
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM-------------------VAGP-- 121
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI 226
F + ++ G +C + D + W N +
Sbjct: 122 -----------------LRFLSQTESITAFMGDTVLLKCE--VIGDPMPTIHWQKNQQDL 162
Query: 227 K---SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT-SGNLLVHSKKSIQ 282
SR + G AL I + P DSGVY C A N + + S +
Sbjct: 163 NPIPGDSRVVVLPS-G--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH 219
Query: 283 TETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPV 342
+ F Q ++ E + A E
Sbjct: 220 -------------------------------RQLYFLQRPSNVIAIEGKDAVLECC--VS 246
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
G TWLR IQ ++ ++ L +DSGTYTC + S
Sbjct: 247 GYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISAS 304
Query: 403 STLFVES 409
+ L V
Sbjct: 305 AELTVLV 311
Score = 120 bits (302), Expect = 2e-29
Identities = 44/237 (18%), Positives = 78/237 (32%), Gaps = 43/237 (18%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE---DSSRITTKHDFG 560
F ++I G C +GDP + W +N++ L SR+ G
Sbjct: 122 LRFLSQTESI-TAFMGDTVLLKCE--VIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS-G 177
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
A+ +S ++ D G+Y C A N + +A +++
Sbjct: 178 --ALQISRLQPGDSGVYRCSARNPAST-------RTGNEAEVRI---------------- 212
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
+ + F Q + +EG+ A +C V G P F W ++
Sbjct: 213 ------LSDPGLHRQLYFLQRPS-NVIAIEGKDAVLECCVS--GYPPPSFTWLRGEEVIQ 263
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+ S+ + L I+ DSG Y C + +S L V ++
Sbjct: 264 LRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNH 318
Score = 97.2 bits (242), Expect = 1e-21
Identities = 41/242 (16%), Positives = 70/242 (28%), Gaps = 50/242 (20%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS----RITTK 556
++ F + G N +C ++W ++ L +
Sbjct: 19 RRSLHFVSEPSDAV-TMRGGNVLLNCS-AESDRGVPVIKWKKDGLILALGMDDRKQQLPN 76
Query: 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQ 616
+ S DEG+Y C+A+ ++ + + K+
Sbjct: 77 GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV-------------------- 116
Query: 617 ELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG 676
F + G + C V +GDP W N
Sbjct: 117 --------------MVAGPLRFLSQTESIT-AFMGDTVLLKCEV--IGDPMPTIHWQKNQ 159
Query: 677 VELKM---GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKS 732
+L SR V G L I++ P DSGVY C A N A + +++ S
Sbjct: 160 QDLNPIPGDSRVVVLPS-G--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDP 216
Query: 733 DI 734
+
Sbjct: 217 GL 218
Score = 56.4 bits (136), Expect = 2e-08
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG- 692
F + M G + +C +W +G+ L +G Q
Sbjct: 20 RSLHFVSEPSDA-VTMRGGNVLLNCSAES-DRGVPVIKWKKDGLILALGMDDRKQQLPNG 77
Query: 693 ---YVTLDITKCVPADSGVYMCKA-INRAGEAVSST-SLKVKSKSDIVSE 737
+ ++ D G+Y C+A + +G +S T + V +S+
Sbjct: 78 SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ 127
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 155 bits (394), Expect = 2e-42
Identities = 68/365 (18%), Positives = 106/365 (29%), Gaps = 89/365 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ +PK G A F C+ P +V W K G+ V D A+
Sbjct: 10 IKEPKDQI-GVSGGVASFVCQATGDPK----PRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 111 DIIDTI--PEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
I + P D Y C A N VG V A L +L Q +G
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLT------VLREDQLPSG----------- 107
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPI 226
P + ++ + A C P + + WF + +P+
Sbjct: 108 --------------FPNIDMGPQLKVVERTRTATMLCAASGNPDPE----ITWFKDFLPV 149
Query: 227 KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG-NLLVHSKKSIQTET 285
+ AL I D G Y C A N+ G +S NL V +
Sbjct: 150 DPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV----- 204
Query: 286 QHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS 345
AP F+ + + VG
Sbjct: 205 -----------------------------APRFSILPMSHEIMPGGNVNITCV--AVGSP 233
Query: 346 KLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
V W++ + + + + + T +DS YTC A++ LG + +
Sbjct: 234 MPYVKWMQGAEDLTPEDDM-PVGR-----NVLELTDVKDSANYTCVAMSSLGVIEAVAQI 287
Query: 406 FVESK 410
V+S
Sbjct: 288 TVKSL 292
Score = 129 bits (325), Expect = 3e-33
Identities = 58/324 (17%), Positives = 98/324 (30%), Gaps = 46/324 (14%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+T + P F + +D A F + GD K +VTW + G + + + D
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 370 FGYVALN--FKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQ 427
A+ P D Y C A N +GE + L V + D
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLRE-----DQLPSGFPNIDM 113
Query: 428 NLEDTSRFKRKEEEEV----EVTQQPSFTV--QLNGPTELVEGEGTIITDTQHPKGLEKI 481
+ + + P + + V+ + Q G +I
Sbjct: 114 GPQLKVV---ERTRTATMLCAASGNPDPEITWFKDF--LPVDPSASNGRIKQLRSGALQI 168
Query: 482 R--KLEDT---------EPHKRPEVDDNAT----KQRPVFTKPLQNIDAVEEGKNAHFSC 526
+ D R N P F+ + + + G N + +C
Sbjct: 169 ESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHE-IMPGGNVNITC 227
Query: 527 RLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG 586
VG P V+W + + L + + L +D Y C A ++LG
Sbjct: 228 V--AVGSPMPYVKWMQGAEDLTPEDDMPVGRNV------LELTDVKDSANYTCVAMSSLG 279
Query: 587 EAVTTASMKIK--TKAGLQLETQH 608
A + +K KAG + H
Sbjct: 280 VIEAVAQITVKSLPKAGTKHHHHH 303
Score = 125 bits (315), Expect = 7e-32
Identities = 48/238 (20%), Positives = 74/238 (31%), Gaps = 37/238 (15%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
ET + P F K+ G A F C+ D +V W + S T +
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 238 FGFVA-LDIMQ-CLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
A L I P D VY C A N++G+ L V +
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLRE----------------- 101
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
+ S P + V + A G+ ++TW ++
Sbjct: 102 -------------DQLPSGFPNIDMGPQLKVVERTRTATMLCA--ASGNPDPEITWFKDF 146
Query: 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKAS 412
+P+ S + AL + + D G Y C A N G +S L+V +
Sbjct: 147 LPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV 204
Score = 119 bits (301), Expect = 5e-30
Identities = 47/244 (19%), Positives = 78/244 (31%), Gaps = 44/244 (18%)
Query: 494 EVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI 553
+D P Q VE + A C G+P ++ WF++ P++ S+
Sbjct: 99 LREDQLPSGFPNIDMGPQLK-VVERTRTATMLCA--ASGNPDPEITWFKDFLPVDPSASN 155
Query: 554 TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLK 613
A+ + D+G Y C ATN+ G ++ A L +
Sbjct: 156 GRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSP-------ANLYV--------- 199
Query: 614 KIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF 673
+ P F+ L + EIM G + + C V G P +W
Sbjct: 200 --RVQNVA--------------PRFSILPM-SHEIMPGGNVNITCVAV--GSPMPYVKWM 240
Query: 674 VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
+L V + DS Y C A++ G + + VKS
Sbjct: 241 QGAEDLTPEDDMPVG------RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPK 294
Query: 734 IVSE 737
++
Sbjct: 295 AGTK 298
Score = 118 bits (298), Expect = 1e-29
Identities = 48/232 (20%), Positives = 76/232 (32%), Gaps = 38/232 (16%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
++ P F K ++ G A F C+ GDP +V W + K + T + D
Sbjct: 4 EEPPRFIKEPKDQI-GVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 561 YVA-MDLSHVR-AEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
A + + +R DE +Y C A N++GE A + +
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR-------------------- 100
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
E + P + ++A C G+P WF + +
Sbjct: 101 ---------EDQLPSGFPNIDMGPQLK-VVERTRTATMLCAAS--GNPDPEITWFKDFLP 148
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
+ + L I D G Y C A N AG SS +L V+
Sbjct: 149 VDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR 200
Score = 110 bits (277), Expect = 8e-27
Identities = 45/240 (18%), Positives = 65/240 (27%), Gaps = 55/240 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
P+ + A C +P ++ WFK+ PV I
Sbjct: 112 DMGPQLKV-VERTRTATMLCAASGNPDP------EITWFKDFLPVDPSASNGRIKQLRSG 164
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAE-VQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
AL I + D G Y C A N G A L
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANL--------------------------- 197
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
Y+ AP F+ + EI G + C V V+W +
Sbjct: 198 -------YVRVQNV-APRFSILPMSHEIMPGGNVNITCV--AVGSPMPYVKWMQGAEDLT 247
Query: 228 SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
+ +DS YTC A+++LG + V S T+ H
Sbjct: 248 PEDDMPVGR------NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHH 301
Score = 73.7 bits (181), Expect = 3e-14
Identities = 32/126 (25%), Positives = 44/126 (34%), Gaps = 7/126 (5%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
E P F + + G A + C+ GDP R W G ++ ++ D
Sbjct: 5 EPPRFIKEPK-DQIGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 694 V-TLDITK-CVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKE 751
L I P D VY C A N GE L V + + S P+ QLK
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF--PNIDMGPQLKV 119
Query: 752 AEMNKP 757
E +
Sbjct: 120 VERTRT 125
Score = 60.6 bits (147), Expect = 4e-10
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
P S E + G+ + C V V+W + +T P+ +
Sbjct: 209 SILPMSHE-IMPGGNVNITCV--AVGSPMPYVKWMQGAEDLTPEDDM-PVGR-----NVL 259
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNE 155
T +DS YTC A++ +G E A + + T +
Sbjct: 260 ELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHHH 302
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 157 bits (399), Expect = 5e-42
Identities = 76/453 (16%), Positives = 131/453 (28%), Gaps = 88/453 (19%)
Query: 308 IEDTVSQAPVFT-QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN--RV 364
I++ ++Q P T Q +D V E G+ W RN + RV
Sbjct: 9 IQNELTQPPTITKQSAKDHIVDPRDNILIECE--AKGNPAPSFHWTRNSRFFNIAKDPRV 66
Query: 365 STMHDFG--YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAA 422
S G + E G Y C A N+ G A+++ LQ+
Sbjct: 67 SMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR-------IRLQVSKSPLWP 119
Query: 423 LQKIQNLE----DTSRFK--------------RKEEEEVEVTQQPSFTVQLNG-----PT 459
+ + + + E +TQ + NG
Sbjct: 120 KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHNGDLYFSNV 178
Query: 460 ELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDA--VE 517
L + + + + +K + ++ P F P + V
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQK---NPFTLKVLTTRGVAERTPSFMYPQGTASSQMVL 235
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577
G + C I G PT + W++ L + A+ +++V ED G Y
Sbjct: 236 RGMDLLLEC--IASGVPTPDIAWYKKGGDLPSDKAKFENFN---KALRITNVSEEDSGEY 290
Query: 578 ICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPI 637
C A+N +G T S+++ P
Sbjct: 291 FCLASNKMGSIRHTISVRV------------------------------------KAAPY 314
Query: 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLD 697
+ + G+ CR G+P +W VNG L+ + G T+
Sbjct: 315 WLDEPKNLI-LAPGEDGRLVCRAN--GNPKPTVQWMVNGEPLQSAPPNPNREVAGD-TII 370
Query: 698 ITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
+ VY C N G +++ + V
Sbjct: 371 FRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 135 bits (341), Expect = 2e-34
Identities = 71/450 (15%), Positives = 131/450 (29%), Gaps = 84/450 (18%)
Query: 175 YIEETTTQAPIFTT-SLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIK--SG 229
I+ TQ P T S K+ + EC P W N+
Sbjct: 8 SIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNP----APSFHWTRNSRFFNIAKD 63
Query: 230 SRFTETNNFG--FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
R + G + E G Y C A N G A+++ L
Sbjct: 64 PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRL------------- 110
Query: 288 GESLSRLQQLEQGRYQRTSIIEDTVSQAPVF-TQPMRDIHVAENQAAHFEARLIPVGDSK 346
VS++P++ + + + V E + P G
Sbjct: 111 -----------------------QVSKSPLWPKENLDPVVVQEGAPLTLQCN-PPPGLPS 146
Query: 347 LKVTWLRNGVPIQASN-RVSTMHDFGYVALNFKYTYPEDS-GTYTCRAVNELGEAVTSST 404
+ W+ + + + RVS H+ G L F +D Y+C A +
Sbjct: 147 PVIFWMSSSMEPITQDKRVSQGHN-G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKN 203
Query: 405 LFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEV----TQQPSFTVQLNGPTE 460
F + + + + Q + R + +E P G
Sbjct: 204 PFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKG--- 260
Query: 461 LVEGEGTIITDTQHPKGLEKIRKLEDTEPH-----------KRPEVDDNAT---KQRPVF 506
G + +D + K ++ + K + + K P +
Sbjct: 261 -----GDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYW 315
Query: 507 TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL 566
+N+ + G++ CR G+P V+W N +PL+ + + G +
Sbjct: 316 LDEPKNL-ILAPGEDGRLVCR--ANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT-IIF 371
Query: 567 SHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ +Y C +N G + A + +
Sbjct: 372 RDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 132 bits (333), Expect = 2e-33
Identities = 56/361 (15%), Positives = 97/361 (26%), Gaps = 80/361 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSN--LKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ ++E +C + W + + G L
Sbjct: 119 PKENLDPVVVQEGAPLTLQCN---PPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG--DL 173
Query: 111 DIIDTIPEDS-GTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
+ + +D Y+C A Q + L
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFTHTIQQ------KNPFTLKVLTTRG------------- 214
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKS 228
+ E T + + + G EC S T + W+ + S
Sbjct: 215 ------VAERTPSFMYPQGTASSQMVLRGMDLLLECI---ASGVPTPDIAWYKKGGDLPS 265
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288
E N AL I EDSG Y C A N +G + ++ V +
Sbjct: 266 DKAKFENFN---KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA----------- 311
Query: 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK 348
AP + +++ +A + R G+ K
Sbjct: 312 --------------------------APYWLDEPKNLILAPGEDGRLVCR--ANGNPKPT 343
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
V W+ NG P+Q++ G + F+ T Y C NE G + ++ + V
Sbjct: 344 VQWMVNGEPLQSAPPNPNREVAGDT-IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Query: 409 S 409
Sbjct: 403 D 403
Score = 124 bits (312), Expect = 1e-30
Identities = 59/373 (15%), Positives = 99/373 (26%), Gaps = 95/373 (25%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTI--GHRFRPIHDFG-- 106
+ + R + EC+ + P W +N R I R G
Sbjct: 20 TKQSAKDHIVDPRDNILIECEAKGNPA----PSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLE 165
+ E G Y C A N G A LQ +
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQ-------------------VSKSP 116
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVP 225
+L ++EG +C P + + W +++
Sbjct: 117 L------------------WPKENLDPVVVQEGAPLTLQCN-PPPGLPSPVIFWMSSSME 157
Query: 226 -IKSGSRFTETNNFGFVALDIMQCLPEDS-GVYTCRAVNALGQAVTSGN---LLVHSKKS 280
I R ++ +N G L + +D Y+C A + N L V + +
Sbjct: 158 PITQDKRVSQGHN-G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRG 214
Query: 281 IQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR---DIHVAENQAAHFEA 337
+ + P F P V E
Sbjct: 215 V------------------------------AERTPSFMYPQGTASSQMVLRGMDLLLEC 244
Query: 338 RLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
I G + W + G + + +F L EDSG Y C A N++G
Sbjct: 245 --IASGVPTPDIAWYKKGGDLPSDKA--KFENFNKA-LRITNVSEEDSGEYFCLASNKMG 299
Query: 398 EAVTSSTLFVESK 410
+ ++ V++
Sbjct: 300 SIRHTISVRVKAA 312
Score = 108 bits (270), Expect = 3e-25
Identities = 45/237 (18%), Positives = 80/237 (33%), Gaps = 36/237 (15%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-EDSSRITTKHDFGY 561
+ L + V+EG C P G P+ + W + R++ H+ G
Sbjct: 116 PLWPKENLDPVV-VQEGAPLTLQCN-PPPGLPSPVIFWMSSSMEPITQDKRVSQGHN-G- 171
Query: 562 VAMDLSHVRAED-EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ S+V +D + Y C A +++ K L++ T + +
Sbjct: 172 -DLYFSNVMLQDMQTDYSCNARFHFTH-----TIQQKNPFTLKVLTTRGVAERTPSFMYP 225
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
+ Q ++ G +C G PT W+ G +L
Sbjct: 226 QGTASSQM-------------------VLRGMDLLLECIAS--GVPTPDIAWYKKGGDLP 264
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+ ++ L IT DSG Y C A N+ G + S++VK+ + E
Sbjct: 265 -SDKAKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDE 318
Score = 99.6 bits (248), Expect = 2e-22
Identities = 44/249 (17%), Positives = 71/249 (28%), Gaps = 50/249 (20%)
Query: 501 KQRPVFTK-PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKH 557
Q P TK ++ V+ N C G+P W RN + + R++ +
Sbjct: 14 TQPPTITKQSAKDHI-VDPRDNILIECE--AKGNPAPSFHWTRNSRFFNIAKDPRVSMRR 70
Query: 558 DFG--YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
G + E EG Y C A N G A++ + LQ+
Sbjct: 71 RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALS-------NRIRLQV----------- 112
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
+ P++ + + EG C P G P+ W +
Sbjct: 113 -----------------SKSPLWPKENLDPVVVQEGAPLTLQCN-PPPGLPSPVIFWMSS 154
Query: 676 GVELKM-GSRFHVQHDFGYVTLDITKCVPADS-GVYMCKAINRAG-EAVSSTSLKVKSKS 732
+E R H+ G L + + D Y C A +K +
Sbjct: 155 SMEPITQDKRVSQGHN-G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLT 211
Query: 733 DIVSESLQP 741
P
Sbjct: 212 TRGVAERTP 220
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 156 bits (395), Expect = 2e-41
Identities = 60/497 (12%), Positives = 125/497 (25%), Gaps = 100/497 (20%)
Query: 250 PEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIE 309
+D V C +N + G S + +E+ +
Sbjct: 4 NQDLPVIKCVLINHKNNDSSVGK---SSSYPMVSESPEDLGCAL---------------- 44
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
Q+ + V + + + + + W+ + + +
Sbjct: 45 --RPQSSGTVYEAAAVEVDVSASITLQV--LVDAPGNISCLWVFKHSSLNCQPHF-DLQN 99
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNL 429
G V++ +G Y +E T+ + + L ++ L
Sbjct: 100 RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDAL 159
Query: 430 EDTSRFKRKEEEEVEVTQQPSFTVQLNG-PTELVEGEGTIITDTQHPKGLEKIRKLEDTE 488
E +P L E + E + K + + +L T+
Sbjct: 160 VCI----------SESVPEPIVEWVLCDSQGESCKEESPAVV----KKEEKVLHELFGTD 205
Query: 489 -------PHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWF 541
R L + ++ G+ C+ + + W
Sbjct: 206 IRCCARNELGRECTRLFTIDLNQTPQTTLPQL-FLKVGEPLWIRCK-AVHVNHGFGLTWE 263
Query: 542 RNEKPLEDSSRI------TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595
K LE+ + T + + +S V D G Y C ++ + +A +
Sbjct: 264 LENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVT 320
Query: 596 IKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS-EIMEGQSA 654
I EK + EI + +
Sbjct: 321 IV------------------------------------EKGFINATNSSEDYEIDQYEEF 344
Query: 655 HYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714
+ R P +R W + + D GY ++ G Y+ A
Sbjct: 345 CFSVRF--KAYPQIRCTWTFSRKSFPCEQK---GLDNGY-SISKFCNHKHQPGEYIFHAE 398
Query: 715 NRAGEAVSSTSLKVKSK 731
N + +L ++S
Sbjct: 399 NDDAQFTKMFTLNIRSG 415
Score = 141 bits (356), Expect = 2e-36
Identities = 59/516 (11%), Positives = 122/516 (23%), Gaps = 131/516 (25%)
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ-- 171
+T +D C +N N++ + S Y
Sbjct: 1 ETGNQDLPVIKCVLINHK---------------------NNDSS------VGKSSSYPMV 33
Query: 172 ---RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
+ Q+ E+ + + + + W + +
Sbjct: 34 SESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQV--LVDAPGNISCLWVFKHSSLNC 91
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288
F + N G V++ I++ +G Y + + + +
Sbjct: 92 QPHF-DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT---------- 140
Query: 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK 348
++T ENQ A +
Sbjct: 141 ---------------------------LLYTLRRPYFRKMENQDA-LVCI--SESVPEPI 170
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
V W+ ++ V K + C A NELG T
Sbjct: 171 VEWVLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTID- 225
Query: 409 SKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVT-------QQPSFTVQLNGPTEL 461
L K E + + T +L L
Sbjct: 226 ------------LNQTPQTTLPQLF---LKVGEPLWIRCKAVHVNHGFGLTWELEN-KAL 269
Query: 462 VEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDD------NAT-----------KQRP 504
EG ++ + + +I + + +D +++ ++
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVAR----NDTGYYTCSSSKHPSQSALVTIVEKG 325
Query: 505 VFTKPLQNID-AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ D +++ + FS R P ++ W + K + D GY
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGL---DNGYS- 379
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ G YI A N + ++ I++
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 115 bits (289), Expect = 1e-27
Identities = 44/334 (13%), Positives = 79/334 (23%), Gaps = 94/334 (28%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
VEW V + C A N +G +
Sbjct: 170 IVEWVLCDSQGESCKEES----PAVVKKEEKVLHELFGTDIRCCARNELGRECTRL---- 221
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
T T+L +K G+
Sbjct: 222 -----------------------------------FTIDLNQTPQTTLPQLFLKVGEPLW 246
Query: 203 FECRLIPVSDNTMKVEWFHNNVPIKSGSRF------TETNNFGFVALDIMQCLPEDSGVY 256
C+ + V ++ + W N ++ G+ F T + + D+G Y
Sbjct: 247 IRCKAVHV-NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305
Query: 257 TCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAP 316
TC + Q+ + + K I
Sbjct: 306 TCSSSKHPSQSAL---VTIVEKGFIN---------------------------------- 328
Query: 317 VFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALN 376
T D + + + F R +++ TW + + D GY ++
Sbjct: 329 -ATNSSEDYEIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGL---DNGYS-IS 381
Query: 377 FKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ G Y A N+ + TL + S
Sbjct: 382 KFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 113 bits (283), Expect = 7e-27
Identities = 40/375 (10%), Positives = 86/375 (22%), Gaps = 97/375 (25%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
TV + ++E + + ++ N+ W + F + + G V++
Sbjct: 51 TVYEAAAVE-VDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFD-LQNRGVVSMV 106
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
I+ +G Y + + T+
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTV------------------------------- 135
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR 231
+ ++T E Q A C S VEW + +S
Sbjct: 136 -------SIRNTLLYTLRRPYFRKMENQDA-LVCI--SESVPEPIVEWVLCDSQGESCKE 185
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
+ V + C A N LG+ T +
Sbjct: 186 ----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTID---------------- 225
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
+ + + + + + +TW
Sbjct: 226 ----------------------LNQTPQTTLPQLFLKVGEPLWIRCK-AVHVNHGFGLTW 262
Query: 352 LRNGVPIQASNRV------STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
++ N + + D+G YTC + + S+ +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALV 319
Query: 406 FVESKASLQLDTQNE 420
+ K + +E
Sbjct: 320 TIVEKGFINATNSSE 334
Score = 87.0 bits (215), Expect = 3e-18
Identities = 33/240 (13%), Positives = 59/240 (24%), Gaps = 56/240 (23%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ ++T +E C P VEW + E +
Sbjct: 138 RNTLLYTLRRPYFRKMEN--QDALVCI--SESVPEPIVEWVLCDSQGE----SCKEESPA 189
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
V + + C A N LG T I +
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTRL--------------------FTIDLNQT 229
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P + +PQ + G+ C+ V + W + L+
Sbjct: 230 PQTTLPQL------------------FLKVGEPLWIRCKAVH-VNHGFGLTWELENKALE 270
Query: 681 MGSRFHV-QHDFGYV-----TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
G+ F + + ++ D+G Y C + S + + K I
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGFI 327
Score = 86.3 bits (213), Expect = 5e-18
Identities = 29/223 (13%), Positives = 54/223 (24%), Gaps = 52/223 (23%)
Query: 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGYVA-----LDIIDT 115
L+ CK V + + W + + G+ F + +
Sbjct: 239 LKVGEPLWIRCKAVHV-NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297
Query: 116 IPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEY 175
D+G YTC + + ++T
Sbjct: 298 ARNDTGYYTCSSSKHPS------------QSALVT------------------------- 320
Query: 176 IEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTET 235
I E T S ++ EI + + F R ++ W + + +
Sbjct: 321 IVEKGF--INATNSSEDYEIDQYEEFCFSVRFKA--YPQIRCTWTFSRKSFPCEQKGLDN 376
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
++ G Y A N Q L + S
Sbjct: 377 GY----SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 69.7 bits (170), Expect = 1e-12
Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 32/167 (19%)
Query: 569 VRAEDEGIYIC----KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASP 624
+D + C N +++ + ++ PE L +
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMV---------SESPEDLG--------CAL 44
Query: 625 MPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSR 684
PQ YE E+ S V + W L
Sbjct: 45 RPQSSGTVYEAA--------AVEVDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPH 94
Query: 685 FHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
F +Q+ G V++ I K +G Y+ + A ++ +++
Sbjct: 95 FDLQNR-GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT 140
Score = 59.3 bits (143), Expect = 2e-09
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 6/92 (6%)
Query: 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA 109
+ T + + F + + ++ W + + + D GY
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKA--YPQIRCTWTFSRKSFPCEQKG---LDNGYS- 379
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ G Y A N TL
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 149 bits (377), Expect = 2e-41
Identities = 41/234 (17%), Positives = 66/234 (28%), Gaps = 49/234 (20%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKSGS---RFTET 235
AP F L+N ++ A C++ P V+W+ I + R E
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKP------IVKWYRQGKEIIADGLKYRIQEF 57
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
G+ L I +D+ VY RA N G + +L V I
Sbjct: 58 KG-GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-------------- 102
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
P + M +H + + G +TW +
Sbjct: 103 ------------------HLPKTLEGMGAVHALRGEVVSIKIP--FSGKPDPVITWQKGQ 142
Query: 356 VPIQASNRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
I + + + +D+G Y A N G + L V
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 140 bits (354), Expect = 3e-38
Identities = 42/229 (18%), Positives = 73/229 (31%), Gaps = 40/229 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR--ITTKHDFGY 561
P F + L+N++ V NA C++ G P V+W+R K + + GY
Sbjct: 5 PHFKEELRNLN-VRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ ++ V +D +Y +ATN G TAS++++ A +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI------------------- 102
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
P + + + G+ G P W +
Sbjct: 103 ------------HLPKTLEGMGAV-HALRGEVVSIKIPFS--GKPDPVITWQKGQDLIDN 147
Query: 682 GSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ V + D+G Y+ A NR G + L V
Sbjct: 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 125 bits (315), Expect = 5e-33
Identities = 37/234 (15%), Positives = 66/234 (28%), Gaps = 57/234 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDF--G 106
+ +++ +R + +A CK+ +P V+W++ G+ + I +F G
Sbjct: 8 KEELRNLN-VRYQSNATLVCKVTGHPKP------IVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
Y L I +D+ Y RA N G A+L+ A I
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI------------------ 102
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFHN 222
P + G+ + P + W
Sbjct: 103 ---------------HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP------VITWQKG 141
Query: 223 NVPIKSGSRFT-ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
I + + + +D+G Y A N G + L V
Sbjct: 142 QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 91.3 bits (227), Expect = 3e-21
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF-- 370
+ AP F + +R+++V A ++ G K V W R G I A + +F
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKG 59
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQ 414
GY L +D+ Y RA N+ G +++L VE A +
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIH 103
Score = 80.5 bits (199), Expect = 2e-17
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF--GY 693
P F + L + +A C+V G P +W+ G E+ + +F GY
Sbjct: 5 PHFKEELRNL-NVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
L I D+ VY +A N+ G + SL+V+ + I
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL 104
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 157 bits (398), Expect = 4e-41
Identities = 76/667 (11%), Positives = 152/667 (22%), Gaps = 191/667 (28%)
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173
+T +D C +N + + S+ E + L + Q
Sbjct: 1 ETGNQDLPVIKCVLINHK-----------NNDSSVGKSSSYPMVSESPEDLGCALRPQSS 49
Query: 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRF 232
+ E E+ + V + W + + F
Sbjct: 50 GTVYEAAAV-----------EVDVSASITLQVL---VDAPGNISCLWVFKHSSLNCQPHF 95
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
N + I++ +G Y + + + +
Sbjct: 96 DLQNRGVVS-MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT-------------- 140
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPV--GDSKLKVT 350
++T ENQ A L+ + + V
Sbjct: 141 -----------------------LLYTLRRPYFRKMENQDA-----LVCISESVPEPIVE 172
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVES 409
W+ ++ S V K + C A NELG T T+ +
Sbjct: 173 WVLCDSQGESCKEESP----AVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228
Query: 410 KASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVT-----QQPSFTVQ--LNGPTELV 462
L + K E + + F + L L
Sbjct: 229 TPQTTL-----------------PQLFLKVGEPLWIRCKAVHVNHGFGLTWELEN-KALE 270
Query: 463 EGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNAT-----------------KQRPV 505
EG ++ + + +I + + +D ++
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVAR----NDTGYYTCSSSKHPSQSALVTIVEKGF 326
Query: 506 FTKPLQNID-AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAM 564
+ D +++ + FS R P ++ W + K + ++
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGLD----NGYSI 380
Query: 565 DLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASP 624
G YI A N + ++ I+
Sbjct: 381 SKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR-------------------------- 414
Query: 625 MPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF----------- 673
KP E ++ C G P + W
Sbjct: 415 ----------KPQVL---------AEASASQASCFS--DGYPLPSWTWKKCSDKSPNCTE 453
Query: 674 --VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
GV + +R TL++++ + C A N G + + L
Sbjct: 454 EITEGVWNRKANRKVFGQWVSSSTLNMSE--AIKGFLVKCCAYNSLGTSCETILLNSPGP 511
Query: 732 SDIVSES 738
+ +
Sbjct: 512 FPFIQDG 518
Score = 133 bits (335), Expect = 7e-33
Identities = 69/575 (12%), Positives = 134/575 (23%), Gaps = 145/575 (25%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
TV + ++E + + ++ N+ W + F + + G V++
Sbjct: 51 TVYEAAAVE-VDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFD-LQNRGVVSMV 106
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
I+ +G Y + + T+ R
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIR---------------------------- 138
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR 231
++T E Q A C S VEW + +S
Sbjct: 139 ----------NTLLYTLRRPYFRKMENQDA-LVCI--SESVPEPIVEWVLCDSQGES--- 182
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
+ + V + C A N LG+ T +
Sbjct: 183 -CKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTID---------------- 225
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
++Q P T P + + + + + +TW
Sbjct: 226 --------------------LNQTPQTTLP--QLFLKVGEPLWIRCK-AVHVNHGFGLTW 262
Query: 352 LRNGVPIQASNRVS------TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
++ N + D+G YTC + S+ +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALV 319
Query: 406 FVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG---PTELV 462
+ K + +E E++ ++ F+V+
Sbjct: 320 TIVEKGFINATNSSEDY-------------------EIDQYEEFCFSVRFKAYPQIRCTW 360
Query: 463 EGEGTIITDTQHPKGLEKIRKLEDTEPH---------KRPEVDDNATKQRPVFTKPLQNI 513
Q H + + + KP
Sbjct: 361 TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQ--- 417
Query: 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS---------RITTKHDFGYVAM 564
+ E + SC G P W + + + R + FG
Sbjct: 418 -VLAEASASQASCFSD--GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVS 474
Query: 565 D--LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
L+ A + C A N+LG + T +
Sbjct: 475 SSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSP 509
Score = 99.8 bits (248), Expect = 4e-22
Identities = 43/372 (11%), Positives = 74/372 (19%), Gaps = 114/372 (30%)
Query: 68 AHFECKLEPVTDSNLKVE--WFKNGRPVTIGHRFRPI------HDFGYVALDIIDTIPED 119
CK N W + + G+ F + + D
Sbjct: 245 LWIRCK---AVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 120 SGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEET 179
+G YTC + + A + +I T
Sbjct: 302 TGYYTCSSSKHPSQS---ALVTIVEKG----------------------------FINAT 330
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+ EI + + F R + ++ W + + +
Sbjct: 331 NSSEDY--------EIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGLDNGY-- 378
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
++ G Y A N Q L + K
Sbjct: 379 --SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK--------------------- 415
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG---- 355
P A A + G TW +
Sbjct: 416 ----------------PQVLA------EASASQASCFSD----GYPLPSWTWKKCSDKSP 449
Query: 356 -----VPIQASNRVSTMHDFGY--VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ NR + FG + + C A N LG + + L
Sbjct: 450 NCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSP 509
Query: 409 SKASLQLDTQNE 420
D +
Sbjct: 510 GPFPFIQDGGTK 521
Score = 89.4 bits (221), Expect = 1e-18
Identities = 35/248 (14%), Positives = 65/248 (26%), Gaps = 56/248 (22%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ ++T E ++A C P VEW + E +
Sbjct: 138 RNTLLYTLRRPYF-RKMENQDA-LVCI--SESVPEPIVEWVLCDSQGE----SCKEESPA 189
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
V + + C A N LG T I +
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTRL--------------------FTIDLNQT 229
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P + +PQ + G+ C+ V + W + L+
Sbjct: 230 PQTTLPQL------------------FLKVGEPLWIRCKAVH-VNHGFGLTWELENKALE 270
Query: 681 MGSRFHV------QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
G+ F + + + ++ D+G Y C + S + + K I
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGFI 327
Query: 735 VSESLQPD 742
+ + D
Sbjct: 328 NATNSSED 335
Score = 73.2 bits (179), Expect = 1e-13
Identities = 27/251 (10%), Positives = 47/251 (18%), Gaps = 67/251 (26%)
Query: 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA 109
+ T + + F + + ++ W + + + +
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKA--YPQIRCTWTFSRKSFPCEQKGLD----NGYS 379
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
+ G Y A N TL I+
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTL-------------------NIRR------ 414
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-------N 222
P E + C W
Sbjct: 415 -------------KPQVLA--------EASASQASCFSD--GYPLPSWTWKKCSDKSPNC 451
Query: 223 NVPIKSGSRFTETNNFGFVALDIMQCL----PEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
I G + N F L + C A N+LG + + L
Sbjct: 452 TEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP 511
Query: 279 KSI--QTETQH 287
T+H
Sbjct: 512 FPFIQDGGTKH 522
Score = 37.8 bits (87), Expect = 0.013
Identities = 12/88 (13%), Positives = 20/88 (22%), Gaps = 11/88 (12%)
Query: 83 KVEWFK-------NGRPVTIGHRFRPIHDFGYVALDIIDTI----PEDSGTYTCRAVNLV 131
W K +T G R + + T+ C A N +
Sbjct: 438 SWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSL 497
Query: 132 GFAEVQATLQCRGSAGILTSTQNETGLE 159
G + L G + +
Sbjct: 498 GTSCETILLNSPGPFPFIQDGGTKHHHH 525
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 147 bits (373), Expect = 9e-41
Identities = 38/233 (16%), Positives = 71/233 (30%), Gaps = 41/233 (17%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNF 238
+ +AP +K+ K G+ A C+ + ++W+ + ++ +++
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQ---IVGRPLPDIKWYRFGKELIQSRKYKMSSDG 60
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
L +M ED GVYTC A N +G+ TS LL+ +
Sbjct: 61 RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQF----------------- 103
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ A +G +TW +
Sbjct: 104 -----------------HPGYPLKEKYYGAVGSTLRLHVM--YIGRPVPAMTWFHGQKLL 144
Query: 359 QASNRVSTMHDFGYVALNFKY-TYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
Q S ++ + Y L K +G Y + N G + ++ K
Sbjct: 145 QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
Score = 145 bits (367), Expect = 5e-40
Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 40/231 (17%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ P K ++++ + G+ A SC++ VG P ++W+R K L S + D
Sbjct: 6 EAPGIRKEMKDVT-TKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + EDEG+Y C ATN +GE T++ + ++ E
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY--------- 113
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
G + + G P WF L+
Sbjct: 114 -------------------------YGAVGSTLRLHVMYI--GRPVPAMTWFHGQKLLQN 146
Query: 682 GSRFHVQHDFGYVTLDITKCV-PADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+++ Y L + +G Y + N G + ++++ K
Sbjct: 147 SENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
Score = 122 bits (309), Expect = 4e-32
Identities = 36/235 (15%), Positives = 70/235 (29%), Gaps = 57/235 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ K + + A C++ P ++W++ G+ + +++ D
Sbjct: 11 RKEMKDVT-TKLGEAAQLSCQIVGRPLP------DIKWYRFGKELIQSRKYKMSSDGRTH 63
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
L ++ ED G YTC A N VG E + L L+
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL----------------------LQATP 101
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFHNNV 224
++ G ++E G +P + WFH
Sbjct: 102 QFHPGYPLKEKYY-------------GAVGSTLRLHVMYIGRPVP------AMTWFHGQK 142
Query: 225 PIKSGSRFTETNNFGFVALDIMQC-LPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+++ T N + L + +G Y + N G ++ + K
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
Score = 97.1 bits (242), Expect = 3e-23
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
+AP + M+D+ +AA ++ VG + W R G + S + D
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH 63
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASL 413
L ED G YTC A NE+GE TSS L +++
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQF 103
Score = 95.5 bits (238), Expect = 1e-22
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
E P + + G++A C++V G P +W+ G EL ++ + D
Sbjct: 6 EAPGIRKEMKDV-TTKLGEAAQLSCQIV--GRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPD 742
TL + D GVY C A N GE +S+ L +++ +
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKE 111
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 150 bits (381), Expect = 7e-40
Identities = 79/458 (17%), Positives = 131/458 (28%), Gaps = 117/458 (25%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARL--IPVGDSKLKVTWLRNGVPI-QASNRVSTMHD 369
S PVF + E A + L + W NG + + +
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEE-KVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA 60
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNL 429
V N +D+G+Y C A N G V+ +ASL+ LQ+
Sbjct: 61 GDLVISNP--VKAKDAGSYQCVATNARGTVVSR-------EASLRF-----GFLQE---- 102
Query: 430 EDTSRFKRKEEEEVEVTQ---------------QPSFTVQLNGPTELVEGEGT------- 467
F +E + V++T+ S+ LN + +G
Sbjct: 103 -----FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 157
Query: 468 ---IITDTQ------------HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQN 512
I T+ +D + K +
Sbjct: 158 GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQ-LSLAAEDARQYAPSIKAKFPAD 216
Query: 513 IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
G+ C G+P +++W + + + + + +V E
Sbjct: 217 T-YALTGQMVTLEC--FAFGNPVPQIKWRKLDGSQTSKWLSSEPL------LHIQNVDFE 267
Query: 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
DEG Y C+A N G + I
Sbjct: 268 DEGTYECEAENIKGRDTYQGRIII------------------------------------ 291
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
+ +P + ++T T G + C G P W +G L +R V
Sbjct: 292 HAQPDWLDVITDTE-ADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVSGG-- 346
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
L +K V DSG+Y C A N+ G +S L V++
Sbjct: 347 --ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 143 bits (363), Expect = 2e-37
Identities = 65/358 (18%), Positives = 96/358 (26%), Gaps = 80/358 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ + + E F C P L W N P I R L I
Sbjct: 104 SAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYI 162
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
T D G Y+C A + + F +
Sbjct: 163 AKTEASDLGNYSCFATSHIDFITKSVFSK--------------------------FSQLS 196
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSR 231
+ I + GQ EC N +++W + S
Sbjct: 197 LAAEDARQYAPSIKAKFPADTYALTGQMVTLEC---FAFGNPVPQIKWRKLDGSQTSKWL 253
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
+E L I ED G Y C A N G+ G +++H+
Sbjct: 254 SSEPL------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-------------- 293
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
P + + D + G + V W
Sbjct: 294 -----------------------QPDWLDVITDTEADIGSDLRWSCV--ASGKPRPAVRW 328
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
LR+G P+ + NR+ L F EDSG Y C A N+ G S+ L V++
Sbjct: 329 LRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 138 bits (350), Expect = 8e-36
Identities = 83/441 (18%), Positives = 131/441 (29%), Gaps = 85/441 (19%)
Query: 181 TQAPIFTTSLKNCEIKEG---QRAHFECRLIPVSDNTMKVEWFHNNVPIK--SGSRFTET 235
+ P+F + EG ++ CR ++ W N +K SR+
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCR--ARANPPATYRWKMNGTELKMGPDSRYRLV 59
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
V + ++ +D+G Y C A NA G V SR
Sbjct: 60 AG-DLVISNPVK--AKDAGSYQCVATNARGTVV-----------------------SREA 93
Query: 296 QLEQGRYQRTSIIEDTVSQAPVF-TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
L F + + + E F P L WL N
Sbjct: 94 SL-------------RFGFLQEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLN 139
Query: 355 GVP--IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
P I A R G L T D G Y+C A + + S +
Sbjct: 140 EFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSL 197
Query: 413 LQLDTQNEAALQKIQNLEDTSRFKRKEEE-EVEVTQQPSFTVQ---LNG--PTELVEGEG 466
D + A K + DT + E P ++ L+G ++ + E
Sbjct: 198 AAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP 257
Query: 467 T-IITDTQHPKGLEKIRKLEDT-----EPHKRPEVDDNAT----KQRPVFTKPLQNIDAV 516
I + ED E D +P + + +
Sbjct: 258 LLHIQNVD----------FEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDT-EA 306
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
+ G + +SC G P V W R+ +PL +RI + S + ED G+
Sbjct: 307 DIGSDLRWSCV--ASGKPRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGM 360
Query: 577 YICKATNALGEAVTTASMKIK 597
Y C A N G +A + ++
Sbjct: 361 YQCVAENKHGTVYASAELTVQ 381
Score = 115 bits (289), Expect = 8e-28
Identities = 60/348 (17%), Positives = 95/348 (27%), Gaps = 83/348 (23%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI-PEDSGTYTCR 126
C+ + W NG + +G R G L I + + +D+G+Y C
Sbjct: 25 VTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCV 80
Query: 127 AVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPI 185
A N G + A+L+ +L+
Sbjct: 81 ATNARGTVVSREASLR-------------------FGFLQ------------------EF 103
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI---KSGSRFTETNNFGFVA 242
+I EG F C P + W N P G RF G
Sbjct: 104 SAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT-G--N 159
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L I + D G Y+C A + + S V SK S +
Sbjct: 160 LYIAKTEASDLGNYSCFATSHIDFITKS----VFSKFSQLSLAAEDARQYA--------- 206
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN 362
+ + D + Q E G+ ++ W + +
Sbjct: 207 ------------PSIKAKFPADTYALTGQMVTLEC--FAFGNPVPQIKWRKLDGSQTSKW 252
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
S L+ + ED GTY C A N G + + ++
Sbjct: 253 LSSEPL------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ 294
Score = 107 bits (269), Expect = 4e-25
Identities = 45/237 (18%), Positives = 71/237 (29%), Gaps = 40/237 (16%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL---EDSSRITTKHDFG 560
F+ ++ + EG F+C P P L W NE P D R ++ G
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT-G 158
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ ++ A D G Y C AT+ + + K
Sbjct: 159 --NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQL--------------------- 195
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
+ E RQY I + T + GQ +C G+P + +W
Sbjct: 196 ---SLAAEDARQYAPSIKAKFPADTY-ALTGQMVTLECFAF--GNPVPQIKWRKLDGSQT 249
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
L I D G Y C+A N G + + ++ D +
Sbjct: 250 SKWLSSEP------LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV 300
Score = 96.9 bits (241), Expect = 1e-21
Identities = 51/242 (21%), Positives = 76/242 (31%), Gaps = 47/242 (19%)
Query: 504 PVFTKPLQNIDAVE--EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
PVF + + E + +CR +P W N L+ + G
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCR--ARANPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + + V+A+D G Y C ATNA G V+ +A L+
Sbjct: 63 LVI-SNPVKAKDAGSYQCVATNARGTVVS-------REASLRFGF--------------- 99
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL-- 679
F+ +I EG + C P P + + W +N
Sbjct: 100 -------------LQEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFI 145
Query: 680 -KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
G RF Q G L I K +D G Y C A + S K S ++
Sbjct: 146 PADGRRFVSQTT-G--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 202
Query: 739 LQ 740
Q
Sbjct: 203 RQ 204
Score = 59.5 bits (144), Expect = 2e-09
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 636 PIFTQLLTGT--SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P+F + T E + CR +P + W +NG ELKMG + G
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRLVAG- 61
Query: 694 VTLDITKCV-PADSGVYMCKAINRAGEAVS-STSLKVKSKSDIVSESLQP 741
L I+ V D+G Y C A N G VS SL+ + +E P
Sbjct: 62 -DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDP 110
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 147 bits (372), Expect = 2e-39
Identities = 64/369 (17%), Positives = 102/369 (27%), Gaps = 102/369 (27%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+E L F C P + + G + R + L
Sbjct: 8 TISLSKVE-LSVGESKFFTCTAIGEPESI----DWYNPQGEKIISTQRVVVQKEGVRSRL 62
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
I + ED+G Y C+A + G E L
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQEATVVL----------------------------- 93
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFHNNVP 225
Q F + E K+G+ A CR+ P V W ++N
Sbjct: 94 ---------EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAP------AVSWLYHNEE 138
Query: 226 IKSGS--RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
+ + S RF N L I+ D G+Y C + +++V
Sbjct: 139 VTTISDNRFAMLANNN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIV-------- 187
Query: 284 ETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR--DIHVAENQAAHFEARLIP 341
V+ P + P + + + F R
Sbjct: 188 ---------------------------IVNVPPAISMPQKSFNATAERGEEMTFSCR--A 218
Query: 342 VGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401
G + ++W RNG I+ + + L + D G Y CRA N+ GE
Sbjct: 219 SGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEK 276
Query: 402 SSTLFVESK 410
+ L V +
Sbjct: 277 QAFLQVFVQ 285
Score = 121 bits (304), Expect = 1e-30
Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 45/233 (19%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHD 558
Q+ F + + + ++G++A CR P V W + + + S R +
Sbjct: 96 YQKLTFREVVSPQE-FKQGEDAEVVCR--VSSSPAPAVSWLYHNEEVTTISDNRFAMLAN 152
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ + ++ DEGIY C+ + + +
Sbjct: 153 NN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV------------------ 191
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
PA MPQ+ G+ + CR G P WF NG
Sbjct: 192 -PPAISMPQKSFNA--------------TAERGEEMTFSCRAS--GSPEPAISWFRNGKL 234
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
++ ++ ++ L + + +D G Y+C+A N+AGE L+V +
Sbjct: 235 IEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
Score = 119 bits (301), Expect = 4e-30
Identities = 51/303 (16%), Positives = 100/303 (33%), Gaps = 39/303 (12%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
T + + ++ ++ F +G+ + + G I ++ RV +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTC--TAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKASLQLDTQNEAALQKIQNLEDTS 433
L ED+G Y C+A + G+ ++ L + K + + + Q + +
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ-----GEDA 116
Query: 434 RFKRKEEEEVEVTQQPSFTVQ--LNGPTELVEGEGTIITDTQHPKGLEKIRKL--EDT-- 487
V+ P+ V + + +I + D
Sbjct: 117 EV------VCRVSSSPAPAVSWLYHNEEVTTISDNRF---AMLANNNLQILNINKSDEGI 167
Query: 488 -----------EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL 536
E R + + N E G+ FSCR G P
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA-TAERGEEMTFSCR--ASGSPEP 224
Query: 537 KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ WFRN K +E++ + K + + ++ D G Y+C+ATN GE A +++
Sbjct: 225 AISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Query: 597 KTK 599
+
Sbjct: 283 FVQ 285
Score = 114 bits (287), Expect = 3e-28
Identities = 39/232 (16%), Positives = 65/232 (28%), Gaps = 47/232 (20%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN-VPIKSGSRFTETNNF 238
+ T SL E+ G+ F C ++W++ I S R
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCT---AIGEPESIDWYNPQGEKIISTQRVVVQKEG 57
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
L I ED+G+Y C+A +A GQ + +L
Sbjct: 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL------------------------ 93
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ Q F + + + + A R V+WL + +
Sbjct: 94 ------------EIYQKLTFREVVSPQEFKQGEDAEVVCR--VSSSPAPAVSWLYHNEEV 139
Query: 359 QA--SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
NR + + + L D G Y C E + + V
Sbjct: 140 TTISDNRFAMLANNN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188
Score = 111 bits (278), Expect = 5e-27
Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 48/228 (21%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
T L ++ + G++ F+C +G+P + + + + R+ + +
Sbjct: 5 LQVTISLSKVE-LSVGESKFFTC--TAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ + + ED GIY C+AT+A G+ T ++I
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-------------------------- 95
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
Y+K F ++++ E +G+ A CRV P W + E+
Sbjct: 96 ----------YQKLTFREVVSPQ-EFKQGEDAEVVCRV--SSSPAPAVSWLYHNEEVTTI 142
Query: 683 S--RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
S RF + + L I +D G+Y C+ A + + V
Sbjct: 143 SDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 187
Score = 100 bits (250), Expect = 2e-23
Identities = 38/239 (15%), Positives = 58/239 (24%), Gaps = 53/239 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
E ++ A C++ P V W + VT R
Sbjct: 102 REVVSPQE-FKQGEDAEVVCRVSSSPAP------AVSWLYHNEEVTTISDNR-FAMLANN 153
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
L I++ D G Y C G + +
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEAR--------------GEIDFRDIIVIVN--------- 190
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
A N + G+ F CR + WF N I+
Sbjct: 191 -----------VPPAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEE 237
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
++ + L + + D G Y CRA N G+ L V + H
Sbjct: 238 NEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHH---HHH 291
Score = 65.6 bits (160), Expect = 1e-11
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
T L+ E+ G+S + C + G+P + G ++ R VQ +
Sbjct: 5 LQVTISLS-KVELSVGESKFFTCTAI--GEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
L I D+G+Y C+A + G+ +T L++ K
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV 104
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 149 bits (377), Expect = 2e-39
Identities = 75/359 (20%), Positives = 114/359 (31%), Gaps = 82/359 (22%)
Query: 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDII 113
T+ +S ++R C P L W N P +R + G L I
Sbjct: 106 TRTRSTVSVRRGQGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIA 162
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173
D G YTC N V +V G L + E
Sbjct: 163 KVEKSDVGNYTCVVTNTVTNHKVL------GPPTPLILRNDGVMGE-------------- 202
Query: 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNN-VPIKSGSR 231
+ I + ++G EC N + W + PI +R
Sbjct: 203 -------YEPKIEVQFPETVPAEKGTTVKLEC---FALGNPVPTILWRRADGKPIARKAR 252
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
++N L+I ED+G Y C A N+ G+ V G L ++
Sbjct: 253 RHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA-------------- 294
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
P + Q + DIHVA ++ +E + G K W
Sbjct: 295 -----------------------QPNWVQIINDIHVAMEESVFWECK--ANGRPKPTYRW 329
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L+NG P+ +R+ LN D+G Y C A N+ G +S+ L V ++
Sbjct: 330 LKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 145 bits (367), Expect = 5e-38
Identities = 82/459 (17%), Positives = 147/459 (32%), Gaps = 121/459 (26%)
Query: 315 APVFTQPMRDIHV---AENQAAHFE--ARLIPVGDSKLKVTWLRNGVPIQ-ASNRVSTMH 368
PVF Q + +E + + G+ K + W NG + + ++
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVK----GNPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQN 428
D + N +D+GTY C A N G V+ +A LQ A L+
Sbjct: 61 DGSLLINNP--NKTQDAGTYQCIATNSFGTIVSR-------EAKLQF-----AYLEN--- 103
Query: 429 LEDTSRFKRKEEEEVEVTQ---------------QPSFTVQLNGPTELVEGEGTIITDT- 472
FK + V V + + S+ N + + +T
Sbjct: 104 ------FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG 157
Query: 473 -------------------QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNI 513
+ + L P + + + + +
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVT--NHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215
Query: 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFR-NEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
E+G C +G+P + W R + KP+ +R H + +++ + + E
Sbjct: 216 -PAEKGTTVKLEC--FALGNPVPTILWRRADGKPIARKARR---HKSNGI-LEIPNFQQE 268
Query: 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
D G Y C A N+ G+ V +
Sbjct: 269 DAGSYECVAENSRGKNVAKGQLTF------------------------------------ 292
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
Y +P + Q++ + +S ++C+ G P + W NG L R ++
Sbjct: 293 YAQPNWVQIINDIH-VAMEESVFWECKAN--GRPKPTYRWLKNGDPLLTRDRIQIEQG-- 347
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
TL+IT +D+G+Y C A N+ G SS L V ++
Sbjct: 348 --TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 141 bits (356), Expect = 1e-36
Identities = 69/442 (15%), Positives = 126/442 (28%), Gaps = 87/442 (19%)
Query: 183 APIFTTSLKNCEIK---EGQRAHFECRLIPVSDN-TMKVEWFHNNVPIK--SGSRFTETN 236
P+F + E ++ C V N + W N + R++ +
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCE---VKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQ 296
+ + + +D+G Y C A N+ G V SR +
Sbjct: 62 G-SLLINNPNK--TQDAGTYQCIATNSFGTIV-----------------------SREAK 95
Query: 297 LEQGRYQRTSIIEDTVSQAPVF-TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
L + F T+ + V Q P +L W+ N
Sbjct: 96 L-------------QFAYLENFKTRTRSTVSVRRGQGMVLLCG-PPPHSGELSYAWIFNE 141
Query: 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
P NR + G L D G YTC N + + +
Sbjct: 142 YPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 199
Query: 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG-PTELVE---GEGTIITD 471
+ E ++ + E E G P + +G I
Sbjct: 200 MGEYEPKIEV----------QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIAR 249
Query: 472 TQHPKGLEKIRKLEDTEPH-----------KRPEVDDNAT---KQRPVFTKPLQNIDAVE 517
I ++ + + R + +P + + + +I V
Sbjct: 250 KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIH-VA 308
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577
++ + C+ G P W +N PL RI + ++++ V D G+Y
Sbjct: 309 MEESVFWECK--ANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMY 362
Query: 578 ICKATNALGEAVTTASMKIKTK 599
C A N G ++A + + +
Sbjct: 363 QCVAENKHGVIFSSAELSVIAE 384
Score = 125 bits (316), Expect = 3e-31
Identities = 72/367 (19%), Positives = 108/367 (29%), Gaps = 85/367 (23%)
Query: 53 VTKPKSIE--NLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
V +P + E C+++ P + W NG V IG FR G
Sbjct: 9 VQEPSHVMFPLDSEEKKVKLSCEVKGNPK----PHIRWKLNGTDVDIGMDFRYSVVDG-- 62
Query: 109 ALDIIDTI-PEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
+L I + +D+GTY C A N G T E L Q YLE
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFG-----------------TIVSREAKL-QFAYLE-- 102
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI- 226
T + ++ GQ C P + W N P
Sbjct: 103 ----------------NFKTRTRSTVSVRRGQGMVLLCG-PPPHSGELSYAWIFNEYPSY 145
Query: 227 KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQ 286
+ RF G L I + D G YTC N + G ++ +
Sbjct: 146 QDNRRFVSQET-G--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGE 202
Query: 287 HGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK 346
+ + + Q + + E +G+
Sbjct: 203 Y--------------------------EPKIEVQFPETVPAEKGTTVKLEC--FALGNPV 234
Query: 347 LKVTWLR-NGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
+ W R +G PI R H + L ED+G+Y C A N G+ V L
Sbjct: 235 PTILWRRADGKPIARKARR---HKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 406 FVESKAS 412
++ +
Sbjct: 291 TFYAQPN 297
Score = 111 bits (279), Expect = 1e-26
Identities = 44/236 (18%), Positives = 74/236 (31%), Gaps = 38/236 (16%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-EDSSRITTKHDFGYV 562
F ++ +V G+ C P L W NE P +D+ R ++ G
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCG-PPPHSGELSYAWIFNEYPSYQDNRRFVSQET-G-- 157
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ ++ V D G Y C TN + L L
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP-----PTPLILRN---------------- 196
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF-VNGVELKM 681
+ +P T +G + +C + G+P W +G +
Sbjct: 197 -----DGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL--GNPVPTILWRRADGKPIAR 249
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+R H + L+I D+G Y C A N G+ V+ L ++ + V
Sbjct: 250 KARRHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQI 301
Score = 99.1 bits (247), Expect = 2e-22
Identities = 47/241 (19%), Positives = 72/241 (29%), Gaps = 44/241 (18%)
Query: 504 PVFTKPLQNI--DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
PVF + ++ E K SC G+P + W N ++ G
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCE--VKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + + + +D G Y C ATN+ G V+ +A LQ
Sbjct: 64 L-LINNPNKTQDAGTYQCIATNSFGTIVS-------REAKLQFAY--------------- 100
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
F T + GQ C P + + W N
Sbjct: 101 -------------LENFKTRTRSTVSVRRGQGMVLLCG-PPPHSGELSYAWIFNEYPSYQ 146
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSSTSLKVKSKSDIVSESLQ 740
+R V + G L I K +D G Y C N V + ++D V +
Sbjct: 147 DNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 204
Query: 741 P 741
P
Sbjct: 205 P 205
Score = 63.3 bits (154), Expect = 1e-10
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 8/112 (7%)
Query: 634 EKPIFTQLLTGTSEIM--EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
P+F Q + + E + C V G+P W +NG ++ +G F
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVK--GNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 692 GYVTLDITKCV-PADSGVYMCKAINRAGEAVS-STSLKVKSKSDIVSESLQP 741
G +L I D+G Y C A N G VS L+ + + +
Sbjct: 62 G--SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRST 111
Score = 57.9 bits (140), Expect = 5e-09
Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
V I + +ECK +P W KNG P+ R +
Sbjct: 299 VQIINDIH-VAMEESVFWECKANGRPKP------TYRWLKNGDPLLTRDRIQIEQG---- 347
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L+I D+G Y C A N G A L
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 143 bits (361), Expect = 4e-39
Identities = 39/229 (17%), Positives = 81/229 (35%), Gaps = 26/229 (11%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHDFGY 561
FTK ++ + E F + KV + NEK + + ++ + G
Sbjct: 3 DPFTKSELAVE-ILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ M + ++ EDEG Y + + +T + LQ E
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKE---------------- 104
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
+ ++ + + P F + L+ + + C+V + W+ + E+ +
Sbjct: 105 -AEFQRQEWIRKQGPHFVEYLSWE--VTGECNVLLKCKVANI-KKETHIVWYKDEREISV 160
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
+ + G TL IT+ D+G+Y + G+ S L ++
Sbjct: 161 DEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
Score = 140 bits (355), Expect = 3e-38
Identities = 41/227 (18%), Positives = 73/227 (32%), Gaps = 27/227 (11%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS--RFTETNNFGFVAL 243
FT S EI E + F + +S N KV + N I G + N G + +
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGN-AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
+ + ED G YT + + ++ L+ K +Q E +
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ------------- 110
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVTWLRNGVPIQASN 362
E Q P F + + V + ++ K + W ++ I
Sbjct: 111 -----EWIRKQGPHFVEYL-SWEVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDE 162
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ G L +D+G Y ++ G+ + L E+
Sbjct: 163 KHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
Score = 138 bits (348), Expect = 2e-37
Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 27/225 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVAL 110
++E + E+G F + E + N KV + N + + G ++ + G + +
Sbjct: 6 TKSELAVE-ILEKGQVRFWMQAEKL-SGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
+ ED GTYT + + L + + L+ ++++
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLV----------------GDVFKKLQKEAEF 107
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
QR E+I Q P F L E+ +C++ + T + W+ + I
Sbjct: 108 QRQEWIR---KQGPHFVEYLSW-EVTGECNVLLKCKVANIKKET-HIVWYKDEREISVDE 162
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ + G L I + +D+G+Y + G+ + L+
Sbjct: 163 KHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 77.3 bits (190), Expect = 3e-16
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 479 EKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKV 538
+ +KL+ +R E KQ P F + L V N C++ + +
Sbjct: 96 DVFKKLQKEAEFQRQEWI---RKQGPHFVEYLSWE--VTGECNVLLKCKVANI-KKETHI 149
Query: 539 EWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593
W+++E+ + + K G + ++ +D GIY + G+ +
Sbjct: 150 VWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 202
Score = 76.1 bits (187), Expect = 8e-16
Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 24/152 (15%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN--RVSTMHDFGYV 373
FT+ + + E F + KV ++ N I ++ + G +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII 61
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTS 433
+ + ED GTYT + + ++ L + LQ + +
Sbjct: 62 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE--------------- 106
Query: 434 RFKRKEEEEVEVTQQPSFTVQLNGPTELVEGE 465
+ +E Q P F L+ E+
Sbjct: 107 ----FQRQEWIRKQGPHFVEYLS--WEVTGEC 132
Score = 73.8 bits (181), Expect = 4e-15
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD--FGYVT 695
FT+ EI+E + + + + N E+ G ++ + D G +
Sbjct: 5 FTKSEL-AVEILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
+ + K D G Y + + S+ L + E+
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 105
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 142 bits (360), Expect = 7e-39
Identities = 46/240 (19%), Positives = 76/240 (31%), Gaps = 42/240 (17%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRF-TET 235
ET P FT + + G A F C+ + + K+ W + + E
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQ---ATGDPRPKIVWNKKGKKVSNQRFEVIEF 57
Query: 236 NNFGFVALDIMQC-LPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
++ L I P D +Y C A N +G+ S L V + I
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIP------------ 105
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
P + V + A G+ ++TW ++
Sbjct: 106 ------------------RGFPTIDMGPQLKVVERTRTATMLCA--ASGNPDPEITWFKD 145
Query: 355 GVPIQASN---RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESK 410
+P+ SN R+ + AL + + D G Y C A N G ++ L+V
Sbjct: 146 FLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205
Score = 131 bits (332), Expect = 4e-35
Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 41/234 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS-RITTKHDFGYV 562
P FT+ + G A F C+ GDP K+ W + K + + + D
Sbjct: 7 PRFTRTPVDQT-GVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 563 AMDLSHVR-AEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + +R DE IY C A+N +GE + + + +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLRE---------------------- 101
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
+ P + ++A C G+P WF + + +
Sbjct: 102 -------DQIPRGFPTIDMGPQLKV-VERTRTATMLCAAS--GNPDPEITWFKDFLPVDT 151
Query: 682 GS---RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSK 731
+ R L I + +D G Y C A N AG S+ +L V+
Sbjct: 152 SNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205
Score = 115 bits (290), Expect = 2e-29
Identities = 49/238 (20%), Positives = 70/238 (29%), Gaps = 50/238 (21%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIG-HRFRPIHDFGY 107
P G A F C+ P K+ W K G+ V+ D
Sbjct: 10 TRTPVDQT-GVSGGVASFICQATGDPRP------KIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 108 VALDIIDT-IPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
L I P D Y C A N VG V L +L Q G
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT------VLREDQIPRG--------- 107
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI 226
P + ++ + A C + ++ WF + +P+
Sbjct: 108 ----------------FPTIDMGPQLKVVERTRTATMLCA--ASGNPDPEITWFKDFLPV 149
Query: 227 KSGS---RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT-SGNLLVHSKKS 280
+ + R + + AL I Q D G Y C A N+ G + NL V K
Sbjct: 150 DTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
Score = 77.9 bits (192), Expect = 2e-16
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 4/107 (3%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+T P FT+ D A F + GD + K+ W + G + D
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFD 58
Query: 370 FG--YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQ 414
G V P D Y C A N +GE S+ L V + +
Sbjct: 59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIP 105
Score = 77.6 bits (191), Expect = 3e-16
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 497 DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS---RI 553
D + P Q VE + A C G+P ++ WF++ P++ S+ RI
Sbjct: 102 DQIPRGFPTIDMGPQLK-VVERTRTATMLCA--ASGNPDPEITWFKDFLPVDTSNNNGRI 158
Query: 554 TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
A+ + D+G Y C ATN+ G +
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAP 197
Score = 72.5 bits (178), Expect = 2e-14
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ-HDFG 692
P FT+ + G A + C+ GDP + W G ++ ++ D
Sbjct: 5 TPPRFTRTPV-DQTGVSGGVASFICQAT--GDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 693 YVTLDITKC-VPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
L I P D +Y C A N GE ST L V + I
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG 107
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 144 bits (364), Expect = 4e-38
Identities = 74/441 (16%), Positives = 113/441 (25%), Gaps = 125/441 (28%)
Query: 312 VSQAPVF-TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
++ P + A P G W+++G + S RV
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCP-PPGGGPMGPTVWVKDGTGLVPSERVLV---- 58
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE 430
G L EDSG Y+CR S ++ +S
Sbjct: 59 GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSS-----------------G 101
Query: 431 DTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPH 490
D + + E+ T P +T
Sbjct: 102 DDEDGEDEAEDTGVDTGAPYWT-------------------------------------- 123
Query: 491 KRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS 550
+ K L AV F C G+PT + W +N +
Sbjct: 124 -----------RPERMDKKLL---AVPAANTVRFRCP--AAGNPTPSISWLKNGREFRGE 167
Query: 551 SRIT-TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHP 609
RI K ++ + V D G Y C N G T ++ +
Sbjct: 168 HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL------------ 215
Query: 610 EGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR 669
ER +PI L + G + C+V D
Sbjct: 216 --------------------ERSPHRPILQAGLPANQTAVLGSDVEFHCKV--YSDAQPH 253
Query: 670 FEWF----VNGVELKMGSRFHVQ---------HDFGYVTLDITKCVPADSGVYMCKAINR 716
+W VNG ++ +V D L + D+G Y C A N
Sbjct: 254 IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS 313
Query: 717 AGEAVSSTSLKVKSKSDIVSE 737
G + S L V + + E
Sbjct: 314 IGFSHHSAWLVVLPAEEELVE 334
Score = 143 bits (363), Expect = 5e-38
Identities = 59/364 (16%), Positives = 93/364 (25%), Gaps = 82/364 (22%)
Query: 68 AHFECKLEPVTDSN--LKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTC 125
C W K+G + R G L +++ EDSG Y+C
Sbjct: 26 VELSCP---PPGGGPMGPTVWVKDGTGLVPSERVL----VGPQRLQVLNASHEDSGAYSC 78
Query: 126 RAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPI 185
R + D + T AP
Sbjct: 79 RQRLTQR-----------------VLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121
Query: 186 FT----TSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFGF 240
+T K + F C P + N + W N + R
Sbjct: 122 WTRPERMDKKLLAVPAANTVRFRC---PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 241 V-ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
+L + +P D G YTC N G + L V
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV------------------------ 214
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR----NG 355
+E + + + + F + D++ + WL+ NG
Sbjct: 215 --------LERSPHRPILQAGLPANQTAVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNG 264
Query: 356 VPIQASNRV---------STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLF 406
+ + D L+ ED+G YTC A N +G + S+ L
Sbjct: 265 SKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
Query: 407 VESK 410
V
Sbjct: 325 VLPA 328
Score = 125 bits (314), Expect = 2e-31
Identities = 41/234 (17%), Positives = 68/234 (29%), Gaps = 28/234 (11%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ G C P W + + R L
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCP-PPGGGPMGPTVWVKDGTGLVPSERVLVGPQ----RL 63
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
++ EDSG Y+CR + + S E E+
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTG--------- 114
Query: 304 RTSIIEDTVSQAPVFTQPMR----DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359
+ AP +T+P R + V F G+ ++WL+NG +
Sbjct: 115 -------VDTGAPYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKNGREFR 165
Query: 360 ASNRVSTMH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+R+ + +L + P D G YTC N+ G + TL V ++
Sbjct: 166 GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP 219
Score = 102 bits (254), Expect = 1e-23
Identities = 54/306 (17%), Positives = 84/306 (27%), Gaps = 72/306 (23%)
Query: 10 PQDSSPYL----SSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRER 65
+DS Y +++ + V S + E+ + + P R
Sbjct: 70 HEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMD 129
Query: 66 GH---------AHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIH-DFGYVALD 111
F C P + W KNGR HR I +L
Sbjct: 130 KKLLAVPAANTVRFRCPAAGNPTP------SISWLKNGREFRGEHRIGGIKLRHQQWSLV 183
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
+ +P D G YTC N G TL
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTL------------------------------- 212
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH----NNVPIK 227
+ +E + + + N G F C+ SD ++W N +
Sbjct: 213 --DVLERSPHRPILQAGLPANQTAVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNGSKVG 268
Query: 228 SGSRF---------TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
T + L + ED+G YTC A N++G + S L+V
Sbjct: 269 PDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328
Query: 279 KSIQTE 284
+ E
Sbjct: 329 EEELVE 334
Score = 65.0 bits (158), Expect = 3e-11
Identities = 22/113 (19%), Positives = 30/113 (26%), Gaps = 5/113 (4%)
Query: 631 RQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD 690
R E P G + C P G P W +G L R V
Sbjct: 3 RAAEVPGPEPGQQEQLVFGSGDAVELSCPP-PGGGPMGPTVWVKDGTGLVPSERVLVGPQ 61
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDA 743
L + DSG Y C+ + + S E + +A
Sbjct: 62 ----RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEA 110
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 136 bits (344), Expect = 5e-35
Identities = 64/445 (14%), Positives = 120/445 (26%), Gaps = 89/445 (20%)
Query: 314 QAPVFT-QPMRDIHVAENQAAHFE--ARLIPVGDSKLKVTWLR-NGVPIQASNRVSTMHD 369
+ PVF +P I + + A E A G+ ++ W+R +G + + +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKAS----GNPMPEIIWIRSDGTAVGDVPGLRQISS 57
Query: 370 FG----YVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKASLQLDTQNEAALQ 424
G Y + Y C A N+ G ++ + + D E ++
Sbjct: 58 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR 117
Query: 425 ------------KIQNLEDTSRFKRKEEEEVEVTQQPS--FTVQLNG-----PTELVEGE 465
+ + + + EEE + + V +G +G
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGY 177
Query: 466 GTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFS 525
+ T+H E R + + + P +Q +
Sbjct: 178 KSYQCRTKHRLTGETRLS----ATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLL 233
Query: 526 CRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL--SHVRAEDEGIYICKATN 583
C G P W++ + + V+ L ED G Y+C N
Sbjct: 234 C--PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 291
Query: 584 ALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLT 643
++G + +
Sbjct: 292 SVGGESVETVLTV------------------------------------TAPLSAKIDPP 315
Query: 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP 703
+ + G+ A + C+ G+P W +G + L I
Sbjct: 316 TQT-VDFGRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSES----------VLRIESVKK 362
Query: 704 ADSGVYMCKAINRAGEAVSSTSLKV 728
D G+Y C N A +S LK+
Sbjct: 363 EDKGMYQCFVRNDRESAEASAELKL 387
Score = 123 bits (309), Expect = 2e-30
Identities = 55/366 (15%), Positives = 89/366 (24%), Gaps = 96/366 (26%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGH-----RFRPIHDFG 106
+ A +C + D V W + ++ +
Sbjct: 107 EADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG- 164
Query: 107 YVALDIIDTIPEDS-GTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165
L I + PED +Y CR + +
Sbjct: 165 --ELHIREVGPEDGYKSYQCRTKHRLTGETRL---------------------------- 194
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSL-KNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNN 223
+ R E ++ AP + K E+ C P W+
Sbjct: 195 -SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC---PAQGFPAPSFRWYKFI 250
Query: 224 VPIKSGSRFTETNNFGFVA--LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
+ V+ L I + EDSG Y C N++G L V +
Sbjct: 251 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA---- 306
Query: 282 QTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIP 341
V + A F +
Sbjct: 307 ---------------------------------PLSAKIDPPTQTVDFGRPAVFTCQ--Y 331
Query: 342 VGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401
G+ V+W+++G I S V L + ED G Y C N+ A
Sbjct: 332 TGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAEA 381
Query: 402 SSTLFV 407
S+ L +
Sbjct: 382 SAELKL 387
Score = 105 bits (262), Expect = 2e-24
Identities = 58/388 (14%), Positives = 93/388 (23%), Gaps = 93/388 (23%)
Query: 53 VTKPKSIENLRERGHAHFECKLE---PVTDSNLKVEWFK-NGRPVTIGHRFRPIHDFGYV 108
+ +P + + A ECK + W + +G V R I G
Sbjct: 7 LKEPTNRIDFSNSTGAEIECKASGNPMPE-----IIWIRSDGTAVGDVPGLRQISSDG-- 59
Query: 109 ALDIIDTIPED------SGTYTCRAVNLVGFAE-VQATLQCRGSAGILTSTQNETGLEQI 161
L ED + Y C A N G ++
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR-------------------- 99
Query: 162 QYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWF 220
A + + + G A +C + V+D V W
Sbjct: 100 ------------------AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 141
Query: 221 HNNVPIKSGSRFTETNNFGFV--ALDIMQCLPEDS-GVYTCRAVNALGQAVTSGNLLVHS 277
+ + L I + PED Y CR + L
Sbjct: 142 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA----- 196
Query: 278 KKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM-RDIHVAENQAAHFE 336
R I E S AP + + + +
Sbjct: 197 -----------------------TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLL 233
Query: 337 ARLIPVGDSKLKVTWLRNG--VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVN 394
G W + + + ++ L K EDSG Y C N
Sbjct: 234 C--PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 291
Query: 395 ELGEAVTSSTLFVESKASLQLDTQNEAA 422
+G + L V + S ++D +
Sbjct: 292 SVGGESVETVLTVTAPLSAKIDPPTQTV 319
Score = 94.6 bits (235), Expect = 7e-21
Identities = 41/239 (17%), Positives = 61/239 (25%), Gaps = 46/239 (19%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIP-VGDPTLKVEWFRNEKPL-----EDSSRITTKH 557
+ + V G +A C + V D V W +E+ E +
Sbjct: 104 QYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162
Query: 558 DFGYVAMDL--SHVRAED-EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKK 614
+L V ED Y C+ + L ++
Sbjct: 163 SG-----ELHIREVGPEDGYKSYQCRTKHRLTGETRLSA--------------------- 196
Query: 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV 674
+ P L+ E+M + C G P F W+
Sbjct: 197 ------TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ--GFPAPSFRWYK 248
Query: 675 NGVELKMGSRFHVQHDFGYV--TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ V TL I V DSG Y+C N G T L V +
Sbjct: 249 FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP 307
Score = 81.5 bits (201), Expect = 1e-16
Identities = 41/251 (16%), Positives = 74/251 (29%), Gaps = 54/251 (21%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEK-PLEDSSRITTKHDF 559
++ PVF K N A C+ G+P ++ W R++ + D +
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECK--ASGNPMPEIIWIRSDGTAVGDVPGLRQISSD 58
Query: 560 G----YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
G + + +Y C A N G + S + +A
Sbjct: 59 GKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII---SRDVHVRAV-------------- 101
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVP-VGDPTMRFEWFV 674
A + +++ ++ G SA C + V D W
Sbjct: 102 -----VAQYYEADVNKEH--------------VIRGNSAVIKCLIPSFVADFVEVVSWHT 142
Query: 675 NGVELKM-----GSRFHVQHDFGYVTLDITKCVPADS-GVYMCKAINRAG-EAVSSTSLK 727
+ E ++ V L I + P D Y C+ +R E S +
Sbjct: 143 DEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKG 199
Query: 728 VKSKSDIVSES 738
++ +S S
Sbjct: 200 RLVITEPISSS 210
Score = 76.9 bits (189), Expect = 4e-15
Identities = 37/239 (15%), Positives = 67/239 (28%), Gaps = 60/239 (25%)
Query: 182 QAPIFTTSLKNC-EIKEGQRAHFECRLIPVSDN-TMKVEWFHNN-VPIKSGSRFTETNNF 238
+ P+F N + A EC+ S N ++ W ++ + + ++
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECK---ASGNPMPEIIWIRSDGTAVGDVPGLRQISSD 58
Query: 239 G------FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
G F A D Q + VY C A N G ++ +
Sbjct: 59 GKLVFPPFRAEDYRQ--EVHAQVYACLARNQFGSIISRDVHV------------------ 98
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIP-VGDSKLKVTW 351
A + + HV +A + + V D V+W
Sbjct: 99 ------------------RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSW 140
Query: 352 LRNGVP-----IQASNRVSTMHDFGYVALNFKYTYPEDS-GTYTCRAVNELGEAVTSST 404
+ + + + L+ + PED +Y CR + L S
Sbjct: 141 HTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSA 196
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 137 bits (347), Expect = 2e-34
Identities = 72/663 (10%), Positives = 147/663 (22%), Gaps = 193/663 (29%)
Query: 118 EDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIE 177
+ + C + L+ + +TG Q +
Sbjct: 5 RGAWDFLCVLLLLL---------------------RVQTGSSQPS-------------VS 30
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
P + ++ G C V+W + + ++ E
Sbjct: 31 PGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF------VKWTFEILDETNENKQNE--- 81
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
+ ++G YTC + L ++
Sbjct: 82 -----WITEKAEATNTGKYTCTNKHGLSNSIYV--------------------------- 109
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR--NG 355
V R ++ E+ P+ D ++ L+ G
Sbjct: 110 -------------FVRDPAKLFLVDRSLYGKEDNDTLVR---CPLTDPEVTNYSLKGCQG 153
Query: 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
P+ R G + + K Y C E G++V S ++ + + +
Sbjct: 154 KPLPKDLRFIPDPKAGIMIKSVKRAY--HRLCLHCSVDQE-GKSVLSEKFILKVRPAFKA 210
Query: 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVT-------QQPSFTVQLNGPTELVEGEGTI 468
+ + +E EE VT T + ++ +
Sbjct: 211 ---------VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS 261
Query: 469 ITDTQHPKGLEKIRKLEDTEPH-----------KRPEVDDNAT---KQRPVFT-KPLQNI 513
+ + + + T + P+ N
Sbjct: 262 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINT 321
Query: 514 DA-VEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDFGYVAMD-----L 566
V +G+N P +W + D K + L
Sbjct: 322 TVFVNDGENVDLIVEYE--AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 379
Query: 567 SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMP 626
+ ++ + G Y +N+ A ++ + T
Sbjct: 380 TRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT---------------------------- 411
Query: 627 QEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH 686
KP + C G P +W+ + S
Sbjct: 412 --------KPEIL-------TYDRLVNGMLQCVA--AGFPEPTIDWYFCPGTEQRCSASV 454
Query: 687 VQHDFG------------YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
+ D V I +G CKA N G+ + + K +
Sbjct: 455 LPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514
Query: 735 VSE 737
Sbjct: 515 QIH 517
Score = 136 bits (344), Expect = 4e-34
Identities = 73/566 (12%), Positives = 128/566 (22%), Gaps = 150/566 (26%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
V+W T ++ ++G YTC +
Sbjct: 64 VKWTFEILDET--------NENKQNEWITEKAEATNTGKYTCTNKH-------------- 101
Query: 144 GSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203
GL Y+ ++ KE
Sbjct: 102 -------------GLSNSIYV--------------FVRDPAKLFLVDRSLYGKEDNDTLV 134
Query: 204 ECRLIPVSDNTMKVEWFH--NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261
C ++D + P+ RF G + + + C
Sbjct: 135 RCP---LTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKR--AYHRLCLHCSVD 189
Query: 262 NALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321
G++V S ++ + PV +
Sbjct: 190 QE-GKSVLSEKFILK-------------------------------VRPAFKAVPVVSVS 217
Query: 322 MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA-----LN 376
+ E + I S + TW R + + ++ H + L
Sbjct: 218 KASYLLREGEEFTVTCT-IKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276
Query: 377 FKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFK 436
DSG + C A N G A ++TL V K + +
Sbjct: 277 ISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMIN---------------- 320
Query: 437 RKEEEEVEVTQQPSFTVQLNG---PTE---LVEGEGTIITDTQHPKGLEKIRKLEDTEPH 490
V + V+ P + +PK + +E H
Sbjct: 321 --TTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELH 378
Query: 491 -KRPEVDD---------------NATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP 534
R + + V TKP I + N C G P
Sbjct: 379 LTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP--EILTYDRLVNGMLQCVAA--GFP 434
Query: 535 TLKVEWFRNEKPLEDSSRITTKHDFGYVAMD------------LSHVRAEDEGIYICKAT 582
++W+ + S D + + + G CKA
Sbjct: 435 EPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAY 494
Query: 583 NALGEAVTTASMKIKTKAGLQLETQH 608
N +G+ + K Q+ H
Sbjct: 495 NDVGKTSAYFNFAFKGNNKEQIHPHH 520
Score = 132 bits (332), Expect = 1e-32
Identities = 59/518 (11%), Positives = 136/518 (26%), Gaps = 133/518 (25%)
Query: 251 EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIED 310
+ + C + L +++ G Q + +
Sbjct: 5 RGAWDFLCVLLLLL-------------------------------RVQTGSSQPS--VSP 31
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
P D+ V V W + N+ +
Sbjct: 32 GEPSPPSIHPGKSDLIVRVGDEIRLLCT------DPGFVKWTFEILDETNENKQNE---- 81
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE 430
+ ++G YTC + L ++ +FV A L L ++
Sbjct: 82 ----WITEKAEATNTGKYTCTNKHGLSNSIY---VFVRDPAKLFLVDRSLYG-------- 126
Query: 431 DTSRFKRKEEEEVEVT-----QQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLE 485
KE+ + V + + + + + I D + ++ +++
Sbjct: 127 -------KEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY 179
Query: 486 D-------------TEPHKRPEVD-DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPV 531
+ ++ + A K PV + + + EG+ +C I
Sbjct: 180 HRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY-LLREGEEFTVTCT-IKD 237
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS-----HVRAEDEGIYICKATNALG 586
++ W R + + + H + + R D G+++C A N G
Sbjct: 238 VSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG 297
Query: 587 EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646
A T ++++ K + + T
Sbjct: 298 SANVTTTLEVVDKGFINIFPMINT----------------------------------TV 323
Query: 647 EIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELKMGSRFHVQHDFGYV-----TLDITK 700
+ +G++ P +W + + + L +T+
Sbjct: 324 FVNDGENVDLIVEY--EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTR 381
Query: 701 CVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
+ G Y N A + ++ V +K +I++
Sbjct: 382 LKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYD 419
Score = 117 bits (294), Expect = 8e-28
Identities = 51/372 (13%), Positives = 88/372 (23%), Gaps = 88/372 (23%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVTIGHRFRPIHDFGYVA 109
+ +E C P+TD + K G+P+ RF P G +
Sbjct: 116 KLFLVDRSLYGKEDNDTLVRC---PLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 110 LDIIDTIPEDSGTYTCRAVNLVG-FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
+ C + L
Sbjct: 173 KSV--KRAYHRLCLHCSVDQEGKSVLSEKFIL---------------------------- 202
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
+ P+ + S + ++EG+ C I +++ W N K
Sbjct: 203 ------KVRPAFKAVPVVSVSKASYLLREGEEFTVTCT-IKDVSSSVYSTWKRENSQTKL 255
Query: 229 GSRFTETNNFGFVA-----LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
++ ++ F L I DSGV+ C A N G A + L V K I
Sbjct: 256 QEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI-- 313
Query: 284 ETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG 343
+F + V + +
Sbjct: 314 --------------------------------NIFPMINTTVFVNDGENVDLIVE-YEAF 340
Query: 344 DSKLKVTWLRNGVPIQASNRVSTMHDFGYVA-----LNFKYTYPEDSGTYTCRAVNELGE 398
W+ + L+ + GTYT N
Sbjct: 341 PKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN 400
Query: 399 AVTSSTLFVESK 410
A + ++V +K
Sbjct: 401 AAIAFNVYVNTK 412
Score = 115 bits (290), Expect = 3e-27
Identities = 56/396 (14%), Positives = 97/396 (24%), Gaps = 116/396 (29%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNL--KVEWFKNGRPVTIGHRFRPIHDFGYVA 109
V+ K+ LRE C + D + W + + ++ H +
Sbjct: 213 VVSVSKASYLLREGEEFTVTCT---IKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269
Query: 110 -----LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYL 164
L I DSG + C A N G A V TL+ I
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI---------------- 313
Query: 165 EDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWF 220
IF + +G+ P +W
Sbjct: 314 -------------------NIFPMINTTVFVNDGENVDLIVEYEAFPKPEH-----QQWI 349
Query: 221 HNNVPIKSGSRFTETNNFGFVA-----LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ N + L + + + G YT N+ A + N+ V
Sbjct: 350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
Query: 276 HSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF 335
++K P R N
Sbjct: 410 NTK-------------------------------------PEILTYDRL----VNGMLQC 428
Query: 336 EARLIPVGDSKLKVTWLRNG----------VPIQASNRVSTMHDFG--YVALNFKYTYPE 383
A G + + W +P+ S+ FG V + + +
Sbjct: 429 VAA----GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFK 484
Query: 384 DSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQN 419
+GT C+A N++G+ + Q+ +
Sbjct: 485 HNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHH 520
Score = 95.5 bits (237), Expect = 1e-20
Identities = 50/386 (12%), Positives = 100/386 (25%), Gaps = 97/386 (25%)
Query: 383 EDSGTYTC----RAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRK 438
+ + C + G + S + S S+
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHP----------------------- 41
Query: 439 EEEEVEVTQQPSFTVQLNGPTELV-EGEGTII--TDTQHPKGLEKIRKLEDTEPHKRPE- 494
+ V++ L+ G + + K + +
Sbjct: 42 --------GKSDLIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQNEWITEKAEATNTG 93
Query: 495 ----VDDNAT--------KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR 542
+ + + +++ +E + C + DP + +
Sbjct: 94 KYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLY-GKEDNDTLVRCP---LTDPEVTNYSLK 149
Query: 543 --NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600
KPL R G + S RA C G++V + +K +
Sbjct: 150 GCQGKPLPKDLRFIPDPKAGIMI--KSVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVR- 205
Query: 601 GLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRV 660
P + + + EG+ C +
Sbjct: 206 -----------------------PAFKAVPVVSVSK-------ASYLLREGEEFTVTCTI 235
Query: 661 VPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV-----TLDITKCVPADSGVYMCKAIN 715
++ W + K+ +++ H + TL I+ DSGV+MC A N
Sbjct: 236 KD-VSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANN 294
Query: 716 RAGEAVSSTSLKVKSKSDIVSESLQP 741
G A +T+L+V K I +
Sbjct: 295 TFGSANVTTTLEVVDKGFINIFPMIN 320
Score = 45.8 bits (108), Expect = 4e-05
Identities = 12/153 (7%), Positives = 33/153 (21%), Gaps = 47/153 (30%)
Query: 570 RAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEP 629
A ++C L ++ + +P+ P
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSV--------------------SPGEPSPPSIHPG 42
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH 689
+ + G C + +W ++ ++ +
Sbjct: 43 KSDLI-------------VRVGDEIRLLCT----DPGFV--KWTFEILDETNENKQN--- 80
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722
K ++G Y C + ++
Sbjct: 81 -----EWITEKAEATNTGKYTCTNKHGLSNSIY 108
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 127 bits (320), Expect = 1e-33
Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 44/226 (19%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
T L ++ + G++ F+C +G+P + + + + R+ + +
Sbjct: 3 LQVTISLSKVE-LSVGESKFFTCT--AIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 59
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ + + ED GIY C+AT+A G+ T ++I
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-------------------------- 93
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
Y+K F ++++ E +G+ A CRV P W + E+
Sbjct: 94 ----------YQKLTFREVVSPQ-EFKQGEDAEVVCRV--SSSPAPAVSWLYHNEEVTTI 140
Query: 683 SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
S L I +D G+Y C+ A + + V
Sbjct: 141 SDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185
Score = 124 bits (312), Expect = 1e-32
Identities = 37/228 (16%), Positives = 62/228 (27%), Gaps = 45/228 (19%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
T SL E+ G+ F C + + + I S R
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCT--AIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 59
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L I ED+G+Y C+A +A GQ + +L
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVL---------------------------- 91
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN 362
+ Q F + + + + A R V+WL + + +
Sbjct: 92 --------EIYQKLTFREVVSPQEFKQGEDAEVVCR--VSSSPAPAVSWLYHNEEVTTIS 141
Query: 363 --RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
R + + + L D G Y C E + + V
Sbjct: 142 DNRFAMLANNN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 106 bits (267), Expect = 1e-26
Identities = 40/231 (17%), Positives = 62/231 (26%), Gaps = 57/231 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+E L F C + + G + R +
Sbjct: 6 TISLSKVE-LSVGESKFFTCTAIGEPESI------DWYNPQGEKIISTQRVVVQKEGVRS 58
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
L I + ED+G Y C+A + G E L
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVL--------------------------- 91
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
Q F + E K+G+ A CR S V W ++N +
Sbjct: 92 -----------EIYQKLTFREVVSPQEFKQGEDAEVVCR--VSSSPAPAVSWLYHNEEVT 138
Query: 228 SGS--RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ S RF N L I+ D G+Y C + +++V
Sbjct: 139 TISDNRFAMLANNN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 78.3 bits (193), Expect = 9e-17
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
T + + ++ ++ F +G+ + + G I ++ RV +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCT--AIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 59
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESK 410
L ED+G Y C+A + G+ ++ L + K
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK 96
Score = 72.9 bits (179), Expect = 6e-15
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
T L+ E+ G+S + C + G+P + G ++ R VQ +
Sbjct: 3 LQVTISLS-KVELSVGESKFFTCTAI--GEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 59
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
L I D+G+Y C+A + G+ +T L++ K
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV 102
Score = 69.4 bits (170), Expect = 1e-13
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHD 558
Q+ F + + + ++G++A CR P V W + + + S R +
Sbjct: 94 YQKLTFREVVSPQE-FKQGEDAEVVCR--VSSSPAPAVSWLYHNEEVTTISDNRFAMLAN 150
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + ++ DEGIY C+ + + +
Sbjct: 151 NN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 188
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 126 bits (319), Expect = 1e-33
Identities = 52/234 (22%), Positives = 83/234 (35%), Gaps = 52/234 (22%)
Query: 504 PVFTKPLQNIDA-VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P + P ++ +A E G+ FSCR G P + WFRN K +E++ + K
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGSNT-- 58
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ + ++ D G Y+C+ATN GE A +++
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV-------------------------- 92
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG------ 676
+ +P QL T E C G+P W
Sbjct: 93 ----------FVQPHIIQLKNET--TYENGQVTLVCDA--EGEPIPEITWKRAVDGFTFT 138
Query: 677 -VELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ + R V+ G +L I +DSG Y C+A +R G S L ++
Sbjct: 139 EGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 118 bits (298), Expect = 1e-30
Identities = 45/236 (19%), Positives = 69/236 (29%), Gaps = 55/236 (23%)
Query: 183 APIFTTSLK--NCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFG 239
P + K N + G+ F CR S + + WF N I+ ++ +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCR---ASGSPEPAISWFRNGKLIEENEKYILKGSNT 58
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
L + + D G Y CRA N G+ L V
Sbjct: 59 --ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV---------------------- 94
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359
P Q ++ EN G+ ++TW R
Sbjct: 95 ---------------QPHIIQL-KNETTYENGQVTLVCD--AEGEPIPEITWKRAVDGFT 136
Query: 360 ASN-------RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ R+ G +L+ K DSG Y C A + +G S L +E
Sbjct: 137 FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 94.1 bits (234), Expect = 3e-22
Identities = 43/220 (19%), Positives = 60/220 (27%), Gaps = 62/220 (28%)
Query: 68 AHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTY 123
F C+ EP + WF+NG+ + ++ L + + I D G Y
Sbjct: 22 MTFSCRASGSPEP------AISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPY 73
Query: 124 TCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQA 183
CRA N G E QA L Q+
Sbjct: 74 VCRATNKAGEDEKQAFL-------------------QVFV-------------------Q 95
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPI-------KSGSRFTET 235
P LKN E + C ++ W R
Sbjct: 96 PHIIQ-LKNETTYENGQVTLVCD---AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 151
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
G +L I DSG Y C A + +G S L +
Sbjct: 152 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 74.8 bits (184), Expect = 1e-15
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
I + + G+ + CR G P WF NG ++ ++ ++
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRAS--GSPEPAISWFRNGKLIEENEKYILKGSNT--E 59
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735
L + + +D G Y+C+A N+AGE L+V + I+
Sbjct: 60 LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHII 99
Score = 71.0 bits (174), Expect = 3e-14
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 315 APVFTQPMR--DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
P + P + + + F R G + ++W RNG I+ + +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGSNT- 58
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L + D G Y CRA N+ GE + L V +
Sbjct: 59 -ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 95
Score = 68.3 bits (167), Expect = 2e-13
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-------SRITT 555
+P + +N E C G+P ++ W R + RI
Sbjct: 95 QPHIIQL-KNETTYE-NGQVTLVCD--AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 150
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
K G ++ + V+ D G Y C+A + +G + + I+
Sbjct: 151 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 126 bits (319), Expect = 3e-33
Identities = 46/248 (18%), Positives = 77/248 (31%), Gaps = 44/248 (17%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKS--GSRFTE 234
ET P +N ++ G A F C + + W N +
Sbjct: 1 ETGAHPPEIIRKPQNQGVRVGGVASFYCA---ARGDPPPSIVWRKNGKKVSGTQSRYTVL 57
Query: 235 TNNFGFVALDIMQC-LPEDSGVYTCRAVNALGQAVT-SGNLLVHSKKSIQTETQHGESLS 292
G L I D Y C A N +G AV+ L ++
Sbjct: 58 EQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEG-------------- 103
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWL 352
+ T + PV TQ + + +G+ + W+
Sbjct: 104 ----------------DKTPAGFPVITQGPGTRVIEVGHTVLMTCK--AIGNPTPNIYWI 145
Query: 353 RNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSST-LFVESKA 411
+N + SN ++ D G L + + ED G Y C A N +G + +T L+V+ +
Sbjct: 146 KNQTKVDMSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202
Query: 412 SLQLDTQN 419
+
Sbjct: 203 VGTKHHHH 210
Score = 123 bits (310), Expect = 4e-32
Identities = 58/238 (24%), Positives = 82/238 (34%), Gaps = 41/238 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE--DSSRITTKHDFGY 561
P + QN V G A F C GDP + W +N K + S + G
Sbjct: 7 PEIIRKPQNQG-VRVGGVASFYCA--ARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 562 VAMDLSHVRA-EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ + VRA D+ Y C A N +G+AV+ A L +
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSA-------DATLTIYE-------------- 102
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
+ P+ TQ T I G + C+ + G+PT W N ++
Sbjct: 103 -------GDKTPAGFPVITQGPG-TRVIEVGHTVLMTCKAI--GNPTPNIYWIKNQTKVD 152
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS-TSLKVKSKSDIVSE 737
M + + D G L I D G Y C A N G S T+L VK +
Sbjct: 153 MSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKH 207
Score = 109 bits (274), Expect = 2e-27
Identities = 52/244 (21%), Positives = 75/244 (30%), Gaps = 52/244 (21%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTI--GHRFRPIHDFG 106
+ KP++ +R G A F C P + W KNG+ V+ G
Sbjct: 10 IRKPQNQG-VRVGGVASFYCAARGDPPP------SIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 107 YVALDIIDT-IPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYL 164
L I D Y C A N VG A ATL I
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLT------IYEG------------- 103
Query: 165 EDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV 224
++T P+ T I+ G C+ + + T + W N
Sbjct: 104 ------------DKTPAGFPVITQGPGTRVIEVGHTVLMTCK--AIGNPTPNIYWIKNQT 149
Query: 225 PIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG-NLLVHSKKSIQT 283
+ + + G L I ED G Y C A N++G + NL V ++
Sbjct: 150 KVDMSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTK 206
Query: 284 ETQH 287
H
Sbjct: 207 HHHH 210
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 128 bits (322), Expect = 6e-33
Identities = 60/354 (16%), Positives = 94/354 (26%), Gaps = 93/354 (26%)
Query: 68 AHFECKLEPVTDSNLKVEWFK-NGRPV-TIGHRFRPIHDFGYV-ALDIIDTIPEDSGTYT 124
F C++ + + WF NG + R + + L I + +D+G Y
Sbjct: 20 KFFLCQV-AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYK 78
Query: 125 CRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQA 183
C G E + Q
Sbjct: 79 CVVTAEDGTQSEATVNV--------------------------------------KIFQK 100
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPI--KSGSRFTETNNFGF 240
+F + E KEG+ A C V + + W H + K RF +N
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCD---VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-- 155
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQG 300
L I D G Y C + ++ V
Sbjct: 156 -YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV------------------------- 189
Query: 301 RYQRTSIIEDTVSQAPVFT--QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
V+ P Q + + Q+ G + ++W ++G PI
Sbjct: 190 ----------IVNVPPTVQARQSIVNATANLGQSVTLVCD--ADGFPEPTMSWTKDGEPI 237
Query: 359 QASNRVSTMHDF--GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ H F L + D Y C A N+ GE S L V +K
Sbjct: 238 ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 113 bits (283), Expect = 1e-27
Identities = 42/233 (18%), Positives = 68/233 (29%), Gaps = 41/233 (17%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
Q+ +F +EG++A C V + W + + +
Sbjct: 98 FQKLMFKNAPTPQ-EFKEGEDAVIVCD--VVSSLPPTIIWKHKGRDVILKKDVRFIVLSN 154
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ + ++ DEG Y C+ + +Q+ P
Sbjct: 155 NY-LQIRGIKKTDEGTYRCEGRILARGEINFKD--------IQVIVNVP----------- 194
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P Q + GQS C G P W +G ++
Sbjct: 195 ---PTVQARQSIVNA-----------TANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIE 238
Query: 681 MGSRFHVQHDF--GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+H F L I D Y+C A N+AGE +S LKV +K
Sbjct: 239 NEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 99 bits (249), Expect = 3e-23
Identities = 50/315 (15%), Positives = 100/315 (31%), Gaps = 53/315 (16%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVPIQASN-RVSTMHDFG 371
+ ++ ++ F + + ++W NG + + R+S + +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 372 YV-ALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKASLQLDTQNEAALQKIQNL 429
L +D+G Y C E G ++ + + K + +
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEF------- 112
Query: 430 EDTSRFKRKEEEEV----EVTQQPSFTV--QLNGPTELVEGEGTIITDTQHPKGLEKIRK 483
KE E+ +V T+ + G +++ + +IR
Sbjct: 113 --------KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF---IVLSNNYLQIRG 161
Query: 484 L--ED--------------TEPHKRPEVDDNATKQRPVFTKPLQNIDA-VEEGKNAHFSC 526
+ D K +V N P ++A G++ C
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNV---PPTVQARQSIVNATANLGQSVTLVC 218
Query: 527 RLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL--SHVRAEDEGIYICKATNA 584
G P + W ++ +P+E+ KH F + +L +V DE Y+C A N
Sbjct: 219 D--ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENK 276
Query: 585 LGEAVTTASMKIKTK 599
GE + +K+ K
Sbjct: 277 AGEQDASIHLKVFAK 291
Score = 98.8 bits (246), Expect = 7e-23
Identities = 42/231 (18%), Positives = 71/231 (30%), Gaps = 50/231 (21%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR--NEKPLEDSSRITTKHDFGY 561
+ + G++ F C+ + + WF EK + RI+ +
Sbjct: 3 LQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 562 V-AMDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELE 619
+ + + +D GIY C T G T ++KI
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI----------------------- 97
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL 679
++K +F T E EG+ A C V V W G ++
Sbjct: 98 -------------FQKLMFKNAPTPQ-EFKEGEDAVIVCDV--VSSLPPTIIWKHKGRDV 141
Query: 680 KM--GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ RF V + L I D G Y C+ A ++ ++V
Sbjct: 142 ILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Score = 94.6 bits (235), Expect = 2e-21
Identities = 33/232 (14%), Positives = 54/232 (23%), Gaps = 47/232 (20%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--VPIKSGSRFTETNNFG 239
+ EI G+ F C+ + + WF N + R + N
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 240 FV-ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
L I +D+G+Y C G + V
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQS-EATVNV----------------------- 95
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ Q +F E + A V + W G +
Sbjct: 96 ------------KIFQKLMFKNAPTPQEFKEGEDAVIVCD--VVSSLPPTIIWKHKGRDV 141
Query: 359 QASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
R + + L + D GTY C + + V
Sbjct: 142 ILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 56.4 bits (136), Expect = 1e-08
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 13/96 (13%)
Query: 53 VTKPKSIENLRERGH-AHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDF-- 105
+ + G C + P + W K+G P+ H F
Sbjct: 198 QARQSIVNATANLGQSVTLVCDADGFPEPT------MSWTKDGEPIENEEEDDEKHIFSD 251
Query: 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I + D Y C A N G + L+
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
Score = 54.5 bits (131), Expect = 4e-08
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWF-VNGVELKMG-SRFHVQHDFGYV-TLDITKC 701
EI G+S + C+V WF NG +L R V + TL I
Sbjct: 11 QGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 702 VPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSES 738
D+G+Y C G +T ++K+ K +
Sbjct: 70 NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 121 bits (306), Expect = 6e-33
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
T AP T +++ + GQ F + S T +V+W+HN V ++ S+ TN
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
G + L+I+ C +DSG Y N G+A L V
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 116 bits (293), Expect = 3e-31
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
T+ AP T MR V Q F + +V W NGV +Q S+++ +
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
G + L + +DSGTY N GEA +TL V
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 108 bits (273), Expect = 1e-28
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 629 PERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ 688
P P T + + GQ+ + V PT +W+ NGVEL+ S+ H
Sbjct: 2 PFTLDHAPRITLRMRSH-RVPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYT 58
Query: 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ G +TL+I C DSG Y N GEA +L V
Sbjct: 59 NTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 108 bits (272), Expect = 2e-28
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
P T +++ V G+N F + PT +V+W+ N L++SS+I + G
Sbjct: 7 HAPRITLRMRSHR-VPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ +++ +D G Y TN GEA A++ +
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 83.1 bits (206), Expect = 2e-19
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ +S + + F + +V+W+ NG + + + G +
Sbjct: 12 TLRMRSHR-VPCGQNTRFILNVQSKPTA------EVKWYHNGVELQESSKIHYTNTSGVL 64
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGS 145
L+I+D +DSGTY N G A ATL G
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 126 bits (318), Expect = 3e-32
Identities = 41/231 (17%), Positives = 68/231 (29%), Gaps = 39/231 (16%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK-SGSRFT-ETNNFGF 240
AP F L+N ++ A C+ V+W+ I G ++ + G+
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCK--VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQG 300
L I +D+ VY RA N G + +L V I
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI------------------- 102
Query: 301 RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
P + M +H + + G +TW + I
Sbjct: 103 -------------HLPKTLEGMGAVHALRGEVVSIKIPF--SGKPDPVITWQKGQDLIDN 147
Query: 361 SNRVSTMHDFGYVALNF-KYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ + + +L F +D+G Y A N G + L V
Sbjct: 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198
Score = 122 bits (309), Expect = 4e-31
Identities = 45/231 (19%), Positives = 71/231 (30%), Gaps = 40/231 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F + L+N+ V NA C+ G P V+W+R K + +F
Sbjct: 5 PHFKEELRNL-NVRYQSNATLVCK--VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 564 MDL--SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
L + V +D +Y +ATN G TAS++++ A KI
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA-------------KI-----H 103
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
+ + G+ G P W +
Sbjct: 104 LPKTLEGMGAV--------------HALRGEVVSIKIPF--SGKPDPVITWQKGQDLIDN 147
Query: 682 GSRFHVQHDFGYVTLDITKCV-PADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ V + +L V D+G Y+ A NR G + L V
Sbjct: 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198
Score = 103 bits (258), Expect = 2e-24
Identities = 36/227 (15%), Positives = 64/227 (28%), Gaps = 43/227 (18%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNL-KVEWFKNGRPVTI-GHRFRPIH-DFGYVA 109
+ +++ N+R + +A CK VT V+W++ G+ + G ++R GY
Sbjct: 8 KEELRNL-NVRYQSNATLVCK---VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
L I +D+ Y RA N G A+L+
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVE-------------------------- 97
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG 229
P + G+ + + W I +
Sbjct: 98 -------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPF--SGKPDPVITWQKGQDLIDNN 148
Query: 230 SRF-TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ + +D+G Y A N G + L V
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 82.9 bits (205), Expect = 2e-17
Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 21/181 (11%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH--DF 370
+ AP F + +R+++V A + G K V W R G I A +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCK--VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG 59
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE 430
GY L +D+ Y RA N+ G +++L VE A + L L+ + +
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT----LEGMGAVH 115
Query: 431 ----DTSRFKRKEEEEVEVTQQPSFTVQ--LNGPTELVEGEGTIITDTQHPKGLEKIRKL 484
+ K + + +P + + + T+ L +
Sbjct: 116 ALRGEVVSIK------IPFSGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGV 168
Query: 485 E 485
E
Sbjct: 169 E 169
Score = 70.9 bits (174), Expect = 2e-13
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQH-DFGY 693
P F + L + + +A C+V G P +W+ G E+ G ++ +Q GY
Sbjct: 5 PHFKEELRNLN-VRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
L I D+ VY +A N+ G + SL+V+ + I
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI 102
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 122 bits (309), Expect = 3e-32
Identities = 55/232 (23%), Positives = 88/232 (37%), Gaps = 47/232 (20%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK-SGSRFTETNNFGF 240
+AP+ TT L+ + + A F C S ++ W N + IK +R++ N
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCA--VESYPQPEISWTRNKILIKLFDTRYSIRENGQ- 62
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQG 300
L I+ D G+Y C A N +G AV S L
Sbjct: 63 -LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQ------------------------- 96
Query: 301 RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
V P T+P ++ + E A +G+ K V+W++ ++
Sbjct: 97 -----------VKMKPKITRPPINVKIIEGLKAVLPCT--TMGNPKPSVSWIKGDSALRE 143
Query: 361 SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKA 411
++R+ + + G +L ED+G Y C A N LG A + L VE A
Sbjct: 144 NSRI-AVLESG--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192
Score = 122 bits (308), Expect = 4e-32
Identities = 56/230 (24%), Positives = 82/230 (35%), Gaps = 46/230 (20%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ PV T PL+ +D + A F C P ++ W RN+ ++ + + G
Sbjct: 5 PKAPVITTPLETVD-ALVEEVATFMCA--VESYPQPEISWTRNKILIKLFDTRYSIRENG 61
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ + V D+GIY C A N +G AV + LQ+
Sbjct: 62 QLLT-ILSVEDSDDGIYCCTANNGVGGAVESC-------GALQV---------------- 97
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
KP T+ I+EG A C +G+P W L+
Sbjct: 98 ------------KMKPKITRPPINVK-IIEGLKAVLPCTT--MGNPKPSVSWIKGDSALR 142
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
SR V G +L I D+G Y C A N G A S L+V+
Sbjct: 143 ENSRIAVLES-G--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 101 bits (253), Expect = 9e-25
Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 57/230 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
T ++++ A F C + +P ++ W +N + + I + G +
Sbjct: 11 TTPLETVD-ALVEEVATFMCAVESYPQP------EISWTRNKILIKLFDTRYSIRENGQL 63
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
L I+ D G Y C A N VG A E L
Sbjct: 64 -LTILSVEDSDDGIYCCTANNGVGGAVESCGAL--------------------------- 95
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
P T N +I EG +A C + + V W + ++
Sbjct: 96 -----------QVKMKPKITRPPINVKIIEGLKAVLPCT--TMGNPKPSVSWIKGDSALR 142
Query: 228 SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG-NLLVH 276
SR + G +L I ED+G Y C A N+LG A + L V
Sbjct: 143 ENSRIAVLES-G--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 77.1 bits (190), Expect = 2e-16
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ + +APV T P+ + + A F + +++W RN + I+ + ++ +
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCA--VESYPQPEISWTRNKILIKLFDTRYSIRE 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESK 410
G + L D G Y C A N +G AV S L V+ K
Sbjct: 60 NGQL-LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK 100
Score = 72.8 bits (179), Expect = 7e-15
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQ 688
E+ + P+ T L T + + + A + C V P W N + +K+ +R+ ++
Sbjct: 2 EKLPKAPVITTPLE-TVDALVEEVATFMCAVE--SYPQPEISWTRNKILIKLFDTRYSIR 58
Query: 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
+ L I +D G+Y C A N G AV S +L+VK K I
Sbjct: 59 ENGQ--LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP 106
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 121 bits (304), Expect = 1e-31
Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 45/227 (19%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE--DSSRITTKHDFGY 561
F + + + ++G++A CR P V W + + + +R +
Sbjct: 3 LTFREVVSPQE-FKQGEDAEVVCR--VSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-N- 57
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + ++ DEGIY C+ + + + P P
Sbjct: 58 -NLQILNINKSDEGIYRCEGRVEARGEIDFRD--------IIVIVNVP-----------P 97
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
A MPQ+ G+ + CR G P WF NG ++
Sbjct: 98 AISMPQKSFNAT--------------AERGEEMTFSCRAS--GSPEPAISWFRNGKLIEE 141
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
++ ++ L + + +D G Y+C+A N+AGE L+V
Sbjct: 142 NEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 119 bits (301), Expect = 3e-31
Identities = 46/233 (19%), Positives = 74/233 (31%), Gaps = 50/233 (21%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIK--SGSRFTETNNFG 239
F + E K+G+ A CR VS + V W ++N + S +RF N
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCR---VSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-N 57
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
L I+ D G+Y C + +++V
Sbjct: 58 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV------------------------ 91
Query: 300 GRYQRTSIIEDTVSQAPVFT--QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
V+ P + Q + + F R G + ++W RNG
Sbjct: 92 -----------IVNVPPAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKL 138
Query: 358 IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
I+ + + L + D G Y CRA N+ GE + L V +
Sbjct: 139 IEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 99.1 bits (247), Expect = 6e-24
Identities = 40/237 (16%), Positives = 61/237 (25%), Gaps = 61/237 (25%)
Query: 52 TVTKPKSIENLRERGHAHFECK----LEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGY 107
T + S + ++ A C+ P V W + VT R
Sbjct: 4 TFREVVSPQEFKQGEDAEVVCRVSSSPAP------AVSWLYHNEEVTTISDNRFAMLANN 57
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
L I++ D G Y C G +
Sbjct: 58 N-LQILNINKSDEGIYRCEGRVEAR--------------GEIDFRD-------------- 88
Query: 168 SKYQRGEYIEETTTQAPIFTTS--LKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFH 221
I P + N + G+ F CR P + WF
Sbjct: 89 --------IIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP------AISWFR 134
Query: 222 NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
N I+ ++ + L + + D G Y CRA N G+ L V +
Sbjct: 135 NGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 121 bits (304), Expect = 1e-31
Identities = 45/231 (19%), Positives = 66/231 (28%), Gaps = 51/231 (22%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P TS + +C L S M W N V + + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME----- 57
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
I + EDSG Y C + + + + V +
Sbjct: 58 YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA------------------------- 91
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI---- 358
AP T R + E Q A + VG + W + +
Sbjct: 92 ------------APDITGHKRSENKNEGQDAMMYCKS--VGYPHPEWMWRKKENGVFEEI 137
Query: 359 -QASNRVSTMHDFGYVALN-FKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+S R ++ Y LN ED G Y C A N +G A S+ L V
Sbjct: 138 SNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 113 bits (284), Expect = 6e-29
Identities = 44/235 (18%), Positives = 68/235 (28%), Gaps = 52/235 (22%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ P + I + C L + W +N L + + +
Sbjct: 1 QNEPRIVTSEEVII-RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM--- 56
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
++ RAED G Y C A++++K
Sbjct: 57 --EYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVK----------------------- 90
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P T + EGQ A C+ VG P + W +
Sbjct: 91 -------------AAPDITGHKRSEN-KNEGQDAMMYCKS--VGYPHPEWMWRKKENGVF 134
Query: 681 M-----GSRFHVQHDFGYVTLDITK-CVPADSGVYMCKAINRAGEAVSSTSLKVK 729
RF + + Y L+I + D G Y C A N G A ST L+V+
Sbjct: 135 EEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 98.4 bits (245), Expect = 1e-23
Identities = 47/231 (20%), Positives = 71/231 (30%), Gaps = 55/231 (23%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
VT + I +C L + + + W KNG +T + I
Sbjct: 7 VTSEEVIIRDSLL-PVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM-----EYRI 60
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
EDSG Y C + V + AT++ ++
Sbjct: 61 NKPRAEDSGEYHCVY-HFVSAPKANATIE-------------------VKA--------- 91
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPI----- 226
AP T ++ EGQ A C+ + W +
Sbjct: 92 ----------APDITGHKRSENKNEGQDAMMYCK---SVGYPHPEWMWRKKENGVFEEIS 138
Query: 227 KSGSRFTETNNFGFVALDIMQ-CLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
S RF N + L+I+ + ED G Y C A N++G A S L V
Sbjct: 139 NSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 64.9 bits (158), Expect = 4e-12
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
P I + L + + W +NGV + A+ + ++
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM-----E 57
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
EDSG Y C + + ++T+ V++
Sbjct: 58 YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAA 92
Score = 63.7 bits (155), Expect = 9e-12
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 7/103 (6%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
+P C + M W NGVEL +
Sbjct: 3 EPRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM----- 56
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
I K DSG Y C + ++ +++VK+ DI
Sbjct: 57 EYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGH 98
Score = 59.5 bits (144), Expect = 3e-10
Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE---PVTDSNLKVEWFKNGRPVTIGH-----RFRPIH 103
+T K EN E A CK W K V RF I+
Sbjct: 94 DITGHKRSENKNEGQDAMMYCKSVGYPHPE-----WMWRKKENGVFEEISNSSGRFFIIN 148
Query: 104 DFGYVALDIID-TIPEDSGTYTCRAVNLVGFAEVQATL 140
Y L+I++ I ED G Y C A N +G A V L
Sbjct: 149 KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVL 186
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 121 bits (305), Expect = 7e-30
Identities = 40/238 (16%), Positives = 64/238 (26%), Gaps = 52/238 (21%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-------DSSRITT 555
+P + +N E C G+P ++ W R RI
Sbjct: 1 QPHIIQL-KNE-TTYENGQVTLVCD--AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 56
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
K G ++ + V+ D G Y C+A + +G + + I+
Sbjct: 57 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------------------ 98
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
P F T EG + C V +P W +
Sbjct: 99 ------------------YAPKFISNQT-IYYSWEGNPINISCDV--KSNPPASIHWRRD 137
Query: 676 GVELKMGS--RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ L + + L+I D G Y C A N G L +
Sbjct: 138 KLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV 195
Score = 113 bits (285), Expect = 3e-27
Identities = 39/237 (16%), Positives = 58/237 (24%), Gaps = 53/237 (22%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPI-------KSGSRFTET 235
P LKN E + C ++ W R
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCD---AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
G +L I DSG Y C A + +G S L +
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY------------------ 99
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
AP F + E + + + + W R+
Sbjct: 100 -------------------APKFISNQTIYYSWEGNPINISCDV--KSNPPASIHWRRDK 138
Query: 356 VPIQASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ + A N + T + L T D G Y C A N +G L +
Sbjct: 139 LVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV 195
Score = 100 bits (250), Expect = 1e-22
Identities = 40/240 (16%), Positives = 66/240 (27%), Gaps = 60/240 (25%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGH-------RFR 100
+ + K+ E G C E P ++ W + T R
Sbjct: 3 HIIQLKNET-TYENGQVTLVCDAEGEPIP------EITWKRAVDGFTFTEGDKSLDGRIE 55
Query: 101 PIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQ 160
G +L I D DSG Y C A + +G + L
Sbjct: 56 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL-------------------- 95
Query: 161 IQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF 220
AP F ++ EG + C + S+ + W
Sbjct: 96 ------------------DIEYAPKFISNQTIYYSWEGNPINISCDV--KSNPPASIHWR 135
Query: 221 HNNVPI--KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+ + + K+ + + + L+I D G Y C A N +G L +
Sbjct: 136 RDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV 195
Score = 74.5 bits (183), Expect = 3e-14
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL--EDSSRITTKHD 558
+ P F EG + SC + +P + W R++ L ++++ + T
Sbjct: 98 EYAPKFISNQTIYY-SWEGNPINISCDV--KSNPPASIHWRRDKLVLPAKNTTNLKTYST 154
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ ++++ D G Y C ATN +G + +
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS 197
Score = 64.4 bits (157), Expect = 4e-11
Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 10/111 (9%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI-------QASNRVSTMH 368
P Q ++ EN G+ ++TW R R+
Sbjct: 2 PHIIQL-KNETTYENGQVTLVCD--AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQN 419
G +L+ K DSG Y C A + +G S L +E +
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI 109
Score = 64.1 bits (156), Expect = 6e-11
Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS-------RFHV 687
+P QL T E C G+P W R V
Sbjct: 1 QPHIIQLKNET--TYENGQVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 56
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWK 745
+ G +L I +DSG Y C+A +R G S L ++ +S +W+
Sbjct: 57 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWE 114
Score = 28.6 bits (64), Expect = 9.4
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 206 RLIPVSDNTMKVEW----FHNNVPIK----------SGSRFTETNNFGFVALDIMQCLPE 251
++I +S T KV + H VPI S ++ + + P
Sbjct: 203 KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPN 262
Query: 252 DSGVYTCRAVNALGQ 266
+ AVN GQ
Sbjct: 263 TTYEIRVAAVNGKGQ 277
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 115 bits (290), Expect = 2e-29
Identities = 31/228 (13%), Positives = 57/228 (25%), Gaps = 47/228 (20%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGF 240
+ T + ++ + GQ CR + + ++ +WF N I +G+
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCR---ATGHPFVQYQWFKMNKEIPNGNTSE------- 66
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
L +D+G Y CR N + L V
Sbjct: 67 --LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDI--------------------- 103
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359
++ + + VG W +N +P+
Sbjct: 104 -PESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCV--AVGSPIPHYQWFKNELPLT 160
Query: 360 ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ Y E GTY C N+ + +
Sbjct: 161 HETKKL---------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
Score = 114 bits (288), Expect = 4e-29
Identities = 36/227 (15%), Positives = 66/227 (29%), Gaps = 44/227 (19%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ T ++ V G+ CR G P ++ +WF+ K + + +
Sbjct: 17 RGSKITVNPESKA-VLAGQFVKLCCR--ATGHPFVQYQWFKMNKEIPNGNTSE------- 66
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + V +D G Y+C+ N + S ++ + P
Sbjct: 67 --LIFNAVHVKDAGFYVCRVNNNFTFEFSQWS--------------------QLDVCDIP 104
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
S K T ++M G + C VG P ++WF N + L
Sbjct: 105 ESFQRSVDGVSESKLQICVEPTSQ-KLMPGSTLVLQCVA--VGSPIPHYQWFKNELPLTH 161
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
++ + G Y C N S +
Sbjct: 162 ETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
Score = 98.4 bits (245), Expect = 2e-23
Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 51/226 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
P+S + C+ P ++ +WFK + + G+ L
Sbjct: 22 TVNPESKA-VLAGQFVKLCCRATGHPF----VQYQWFKMNKEIPNGNTSE---------L 67
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
+D+G Y CR N F Q + L + + + +
Sbjct: 68 IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQL-------------------DVCDIPESFQ 108
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG 229
++ + + ++ G +C V +WF N +P+
Sbjct: 109 ----RSVDGVSESKLQICVEPTSQKLMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHE 162
Query: 230 SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
++ + E G Y C N + ++
Sbjct: 163 TKKL---------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 115 bits (290), Expect = 2e-29
Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 49/247 (19%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF-- 559
Q P + ++ V++ + A +C+ G P +EWF++ +P+ + + + + F
Sbjct: 8 QSPRIIEHPTDLV-VKKNEPATLNCK--VEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 560 --GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
+ + + +D G Y C A N +G+AV+ A LQ+
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS-------RHASLQI------------- 104
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV 677
+ F T + +G++A +C G P W +GV
Sbjct: 105 --------------AVLRDDFRVEPKDT-RVAKGETALLECGPPK-GIPEPTLIWIKDGV 148
Query: 678 ELKMGSRFHVQHDFGYV-----TLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSK 731
L L I+ P D G Y C A N G SS L V+ K
Sbjct: 149 PLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Query: 732 SDIVSES 738
+
Sbjct: 209 AAAHHHH 215
Score = 111 bits (279), Expect = 5e-28
Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 48/248 (19%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS----RFTETNN 237
Q+P + +K+ + A C+ +EWF + P+ + R +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCK--VEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
F + +D G Y C A N +GQAV+ L ++ L
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASL------------------QIAVL 107
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
F +D VA+ + A E P G + + W+++GVP
Sbjct: 108 -----------------RDDFRVEPKDTRVAKGETALLECG-PPKGIPEPTLIWIKDGVP 149
Query: 358 IQASNRVSTMHDFGYV-----ALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKA 411
+ +S L P D G Y C A N +G +S L V+ KA
Sbjct: 150 LDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKA 209
Query: 412 SLQLDTQN 419
+ +
Sbjct: 210 AAHHHHHH 217
Score = 104 bits (261), Expect = 1e-25
Identities = 54/249 (21%), Positives = 82/249 (32%), Gaps = 58/249 (23%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIG----HRFRPIHDFG 106
+ P + +++ A CK+E P +EWFK+G PV+ HR +
Sbjct: 13 IEHPTDLV-VKKNEPATLNCKVEGKPEPT----IEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLE 165
+ + +D G Y C A N VG A + A+LQ I L
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQ-------------------IAVL- 107
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNV 224
F K+ + +G+ A EC P + W + V
Sbjct: 108 -----------------RDDFRVEPKDTRVAKGETALLECG--PPKGIPEPTLIWIKDGV 148
Query: 225 PIKSGSRFTETNNFGFV-----ALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSK 278
P+ + + L I P D G Y C A N +G +S L+V K
Sbjct: 149 PLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Query: 279 KSIQTETQH 287
+ H
Sbjct: 209 AAAHHHHHH 217
Score = 77.2 bits (190), Expect = 4e-16
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
R F ++ V +G+ A C P G P + W ++ PL+D ++
Sbjct: 108 RDDFRVEPKDT-RVAKGETALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165
Query: 563 AMD-----LSHVRAEDEGIYICKATNALGEAV-TTASMKIKTKAGLQLETQH 608
+D +S+V DEG Y C A N +G + A + ++ KA H
Sbjct: 166 IVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHHH 217
Score = 67.6 bits (165), Expect = 8e-13
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS----RFHV 687
QY+ P + T + + + A +C+V G P EWF +G + R
Sbjct: 6 QYQSPRIIEHPT-DLVVKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVKSKSDIVSESLQ 740
+ + + D G Y C A NR G+AVS SL++ D +
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK 116
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 118 bits (296), Expect = 4e-29
Identities = 49/362 (13%), Positives = 90/362 (24%), Gaps = 90/362 (24%)
Query: 68 AHFECKLEPVTDS-----NLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGT 122
C P + + W KN T+ AL ++ + EDSGT
Sbjct: 36 VALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGT 95
Query: 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
Y C N ++ L+ + E T
Sbjct: 96 YVCTTRNASYCDKMSIELR----------------------------------VFENTD- 120
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLI---PVSDNTMKVEWFHNNVPI-KSGSRFTETNNF 238
+ C + +K++W+ +++ + K +F
Sbjct: 121 -AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT 179
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
L + ED+G Y C A + + +
Sbjct: 180 TH--LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELR-------------------- 217
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR-LIPVGDSKLKVTW-LRNGV 356
I + PV P++ I + + + G + W N
Sbjct: 218 --------IKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDT 269
Query: 357 PIQASNRVSTMHDFGY------------VALNFKYTYPEDSGT-YTCRAVNELGEAVTSS 403
I+++ + + V L F ED + C N L +
Sbjct: 270 HIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRT 329
Query: 404 TL 405
T+
Sbjct: 330 TV 331
Score = 105 bits (262), Expect = 1e-24
Identities = 46/327 (14%), Positives = 80/327 (24%), Gaps = 48/327 (14%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPV-----GDSKLKVTWLRNGVPIQASNRV 364
+ + E + +P ++ +TW +N
Sbjct: 13 GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE 72
Query: 365 STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQ 424
T AL EDSGTY C N S L V L + Q
Sbjct: 73 ETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFL--PFISYPQ 130
Query: 425 KIQNLEDTSRFKRKEEEEVEVTQQPSFT-------VQLNGPTELVEGEGT--IITDTQ-- 473
+ E + + L T ++ D
Sbjct: 131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE 190
Query: 474 ----------HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAH 523
++ E + + PV PL+ I G
Sbjct: 191 DAGYYRCVLTFAHEGQQYNITRSIELR----IKKKKEETIPVIISPLKTIS-ASLGSRLT 245
Query: 524 FSCR-LIPVGDPTLKVEWFRNEKPL-----------EDSSRITTKHDFGYVAMDL--SHV 569
C+ + G P + W+ E + ++++ Y+ + L V
Sbjct: 246 IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPV 305
Query: 570 RAEDEGI-YICKATNALGEAVTTASMK 595
ED + + C N L ++K
Sbjct: 306 TREDLHMDFKCVVHNTLSFQTLRTTVK 332
Score = 102 bits (255), Expect = 1e-23
Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 45/246 (18%)
Query: 492 RPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPV-----GDPTLKVEWFRNEKP 546
+P A + + + +E G+ C +P P + + W +N+
Sbjct: 7 QPAAHTGAARSCRFRGRHYKREFRLE-GEPVALRCPQVPYWLWASVSPRINLTWHKNDSA 65
Query: 547 LEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLET 606
T+ A+ L ED G Y+C NA + +++
Sbjct: 66 RTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENT------ 119
Query: 607 QHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV---PV 663
F ++ + S C +
Sbjct: 120 -----------------------------DAFLPFISYPQILTLSTSGVLVCPDLSEFTR 150
Query: 664 GDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723
++ +W+ + + L + + G L + D+G Y C +
Sbjct: 151 DKTDVKIQWYKDSLLLDKDNEKFLSVR-GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYN 209
Query: 724 TSLKVK 729
+ ++
Sbjct: 210 ITRSIE 215
Score = 102 bits (254), Expect = 1e-23
Identities = 33/234 (14%), Positives = 55/234 (23%), Gaps = 44/234 (18%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-----TMKVEWFHNNVPIKSGSRFTETNN 237
K EG+ C +P + + W N+
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
AL ++ L EDSG Y C NA S L V
Sbjct: 78 AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDA---------------- 121
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI---PVGDSKLKVTWLRN 354
+ + + + + +K+ W ++
Sbjct: 122 -------------------FLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKD 162
Query: 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ + N + G L ED+G Y C + T +E
Sbjct: 163 SLLLDKDNEKF-LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215
Score = 92.8 bits (230), Expect = 2e-20
Identities = 34/246 (13%), Positives = 66/246 (26%), Gaps = 47/246 (19%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLI---PVGDPTLKVEWFRNEKPLEDSSRITTKH 557
+ F + + + C + +K++W+++ L+ +
Sbjct: 117 ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV 176
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
G + + V ED G Y C T A + I +L +
Sbjct: 177 R-GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI------ELRIK---------- 219
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRV-VPVGDPTMRFEWFVNG 676
+++ P+ L T G C+V + G P W+
Sbjct: 220 -----------KKKEETIPVIISPLK-TISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN 267
Query: 677 ----------VELKMGSRFHVQHD---FGYVTLDITKCVPADSGV-YMCKAINRAGEAVS 722
+ G R + + V L D + + C N
Sbjct: 268 DTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTL 327
Query: 723 STSLKV 728
T++K
Sbjct: 328 RTTVKE 333
Score = 85.5 bits (211), Expect = 4e-18
Identities = 33/242 (13%), Positives = 62/242 (25%), Gaps = 48/242 (19%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNL---KVEWFKNGRPVTIGHRFRPIHDFGYVA 109
+ + L C + K++W+K+ + + + + G
Sbjct: 123 LPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLSVRGTTH 181
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
L + D ED+G Y C + T
Sbjct: 182 LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI----------------------- 218
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVS-----------DNTMKVE 218
++ P+ + LK G R C++ + N +E
Sbjct: 219 ------KKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272
Query: 219 WFHNNVPIKSGSRFTETNN---FGFVALDIMQCLPEDSGV-YTCRAVNALGQAVTSGNLL 274
+ + G R + N + V L ED + + C N L +
Sbjct: 273 SAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
Query: 275 VH 276
H
Sbjct: 333 EH 334
Score = 60.9 bits (147), Expect = 6e-10
Identities = 23/126 (18%), Positives = 36/126 (28%), Gaps = 8/126 (6%)
Query: 622 ASPMPQEPERQ---YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPV-----GDPTMRFEWF 673
A P +P F +EG+ C VP P + W
Sbjct: 1 ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 674 VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
N + + L + + DSG Y+C N + S L+V +D
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD 120
Query: 734 IVSESL 739
+
Sbjct: 121 AFLPFI 126
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 114 bits (288), Expect = 4e-29
Identities = 47/257 (18%), Positives = 79/257 (30%), Gaps = 51/257 (19%)
Query: 496 DDNATKQRPVFTKPLQ---NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR 552
+++ K+ P +T + + AV F C G+P + W +N K + R
Sbjct: 8 ENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCP--AGGNPMPTMRWLKNGKEFKQEHR 65
Query: 553 ITTKH-DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEG 611
I + ++ + V D+G Y C N G T + +
Sbjct: 66 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV-------------- 111
Query: 612 LKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFE 671
ER +PI L + + G + C+V D +
Sbjct: 112 ------------------ERSRHRPILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQ 151
Query: 672 WF-----------VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
W +G+ + + L + AD+G Y+CK N G+A
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
Query: 721 VSSTSLKVKSKSDIVSE 737
S L V K
Sbjct: 212 NQSAWLTVLPKQQAPGR 228
Score = 114 bits (286), Expect = 8e-29
Identities = 42/251 (16%), Positives = 73/251 (29%), Gaps = 54/251 (21%)
Query: 177 EETTTQAPIFTTSLK----NCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSR 231
+AP +T + K + F C P N + W N K R
Sbjct: 9 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNGKEFKQEHR 65
Query: 232 FTETNNFGFV-ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
+L + +P D G YTC N G + +L V
Sbjct: 66 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV--------------- 110
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
+E + + + + F + D++ +
Sbjct: 111 -----------------VERSRHRPILQAGLPANASTVVGGDVEFVCK--VYSDAQPHIQ 151
Query: 351 WLRN-----------GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399
W+++ G+P + S ++ L D+G Y C+ N +G+A
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
Query: 400 VTSSTLFVESK 410
S+ L V K
Sbjct: 212 NQSAWLTVLPK 222
Score = 108 bits (272), Expect = 6e-27
Identities = 42/235 (17%), Positives = 66/235 (28%), Gaps = 57/235 (24%)
Query: 68 AHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIH-DFGYVALDIIDTIPEDSGT 122
F C P + W KNG+ HR + +L + +P D G
Sbjct: 37 VKFRCPAGGNPMP------TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 90
Query: 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
YTC N G L +E + +
Sbjct: 91 YTCVVENEYGSINHTYHLD---------------------------------VVERSRHR 117
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN-----------VPIKSGSR 231
+ N G F C+ SD ++W + +P +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCK--VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQ 286
+ N+ L + D+G Y C+ N +GQA S L V K+ +
Sbjct: 176 HSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
Score = 76.9 bits (189), Expect = 6e-16
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 311 TVSQAPVFTQPM----RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVST 366
+AP +T R V F G+ + WL+NG + +R+
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCP--AGGNPMPTMRWLKNGKEFKQEHRIGG 68
Query: 367 MH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ +L + P D G YTC NE G + L V ++
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR 115
Score = 68.4 bits (167), Expect = 5e-13
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 14/117 (11%)
Query: 494 EVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEK-------- 545
+V + + + + N G + F C+ D ++W ++ +
Sbjct: 109 DVVERSRHRPILQAGLPANAS-TVVGGDVEFVCK--VYSDAQPHIQWIKHVEKNGSKYGP 165
Query: 546 ---PLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
P + + + + L +V D G YICK +N +G+A +A + + K
Sbjct: 166 DGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 222
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 115 bits (289), Expect = 5e-29
Identities = 48/255 (18%), Positives = 78/255 (30%), Gaps = 52/255 (20%)
Query: 504 PVFTKPLQNID---AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-DF 559
P +T+P + AV F C G+PT + W +N + RI
Sbjct: 12 PYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELE 619
++ + V D G Y C N G T ++ + ++
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS------------------- 110
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF----VN 675
P P + L + + G + C+V D +W VN
Sbjct: 111 -PHRP-----------ILQAGLPANQT-AVLGSDVEFHCKVY--SDAQPHIQWLKHVEVN 155
Query: 676 GVELKMGSRFHVQ--------HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727
G ++ +V V L + D G Y+C+A N G A + L
Sbjct: 156 GSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215
Query: 728 VKSKSDIVSESLQPD 742
V E ++ D
Sbjct: 216 VHGPRAAEEELVEAD 230
Score = 108 bits (270), Expect = 1e-26
Identities = 45/234 (19%), Positives = 66/234 (28%), Gaps = 58/234 (24%)
Query: 68 AHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIH-DFGYVALDIIDTIPEDSGT 122
F C P + W KNGR HR I +L + +P D G
Sbjct: 33 VRFRCPAAGNPTP------SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 86
Query: 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
YTC N G TL +E + +
Sbjct: 87 YTCVVENKFGSIRQTYTLD---------------------------------VLERSPHR 113
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVP------------IKSGS 230
+ N G F C+ SD ++W + +
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLK 171
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
+ + V L + D G Y CRA N +G A + L VH ++ + E
Sbjct: 172 SWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225
Score = 106 bits (265), Expect = 8e-26
Identities = 42/250 (16%), Positives = 64/250 (25%), Gaps = 57/250 (22%)
Query: 179 TTTQAPIFTTSL----KNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRF 232
T AP +T K + F C P + W N + R
Sbjct: 7 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS----ISWLKNGREFRGEHRI 62
Query: 233 -TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
+L + +P D G YTC N G + L V
Sbjct: 63 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV---------------- 106
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
+E + + + + F + D++ + W
Sbjct: 107 ----------------LERSPHRPILQAGLPANQTAVLGSDVEFHCK--VYSDAQPHIQW 148
Query: 352 LR-----------NGVPIQASNRVSTMHDF-GYVALNFKYTYPEDSGTYTCRAVNELGEA 399
L+ +G P + V L D G Y CRA N +G A
Sbjct: 149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA 208
Query: 400 VTSSTLFVES 409
+ L V
Sbjct: 209 EKAFWLSVHG 218
Score = 73.4 bits (180), Expect = 1e-14
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 310 DTVSQAPVFTQPMR----DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS 365
+ AP +T+P R + V F G+ ++WL+NG + +R+
Sbjct: 6 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKNGREFRGEHRIG 63
Query: 366 TMH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ +L + P D G YTC N+ G + TL V ++
Sbjct: 64 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP 111
Score = 66.9 bits (163), Expect = 2e-12
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSE---IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
A P P +T+ + + + + C G+PT W NG E
Sbjct: 1 ADPDTGVDT---GAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGRE 55
Query: 679 LKMGSRF-HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732
+ R ++ +L + VP+D G Y C N+ G + +L V +S
Sbjct: 56 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS 110
Score = 49.9 bits (119), Expect = 8e-07
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 15/103 (14%)
Query: 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRP------------VTIGH 97
P + F CK +D+ ++W K+ VT+
Sbjct: 115 ILQAGLPANQT-AVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLK 171
Query: 98 RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+ V L + + D G Y CRA N +G AE L
Sbjct: 172 SWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 109 bits (274), Expect = 1e-28
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKSGSRFT-E 234
+ +AP +++ + +G AHF R++ P + EW+ N V I+ R
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDP------ECEWYKNGVKIERSDRIYWY 55
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L I EDS +A+N G+ + LLV +K
Sbjct: 56 WPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 107 bits (270), Expect = 4e-28
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTM-HDFGY 372
+AP + ++ V + AHF R+ VG + W +NGV I+ S+R+ +
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L + EDS + +A+N GE + + L V++K
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 101 bits (255), Expect = 4e-26
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH-VQHDFG 692
E P + + + +G AH+ RVV G P EW+ NGV+++ R + +
Sbjct: 4 EAPKIFERIQSQ-TVGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I DS M KAIN AGE S L V++K
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 98.9 bits (247), Expect = 4e-25
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT-KHDFG 560
+ P + +Q+ V +G +AHF R+ VG P + EW++N +E S RI +
Sbjct: 4 EAPKIFERIQSQT-VGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + V ED + KA N GE + A + ++ K
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 76.2 bits (188), Expect = 5e-17
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPI-HDFGY 107
+ +S + + AHF ++ +P + EW+KNG + R +
Sbjct: 9 FERIQSQT-VGQGSDAHFRVRVVGKPDP------ECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRG 144
L I D EDS + +A+N+ G A L +
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 111 bits (280), Expect = 4e-28
Identities = 52/242 (21%), Positives = 84/242 (34%), Gaps = 52/242 (21%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH----- 557
P + ++ V +G+ A +C+ G PT +EW++ + +E H
Sbjct: 9 PPRIVEHPSDLI-VSKGEPATLNCK--AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 558 --DFGYVAMDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKK 614
++ + DEG+Y+C A N LGEAV+ AS+++
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV------------------ 107
Query: 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV 674
+ F Q + + G+ A +C+ P G P W
Sbjct: 108 -----------------AILRDDFRQNPSDV-MVAVGEPAVMECQP-PRGHPEPTISWKK 148
Query: 675 NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSD 733
+G L G L IT +D+G Y+C N GE S L V +
Sbjct: 149 DGSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
Query: 734 IV 735
V
Sbjct: 206 FV 207
Score = 106 bits (266), Expect = 2e-26
Identities = 48/246 (19%), Positives = 80/246 (32%), Gaps = 51/246 (20%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSG-----SRFTETN 236
P + + +G+ A C+ T +EW+ +++ S
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCK---AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 237 NFG--FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
+ F+ + + D GVY C A N LG+AV+ L
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE------------------- 106
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
F Q D+ VA + A E + P G + ++W ++
Sbjct: 107 ----------------VAILRDDFRQNPSDVMVAVGEPAVMECQ-PPRGHPEPTISWKKD 149
Query: 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKASL 413
G P+ + T+ G L YT D+G Y C N +GE + L V + S
Sbjct: 150 GSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF 206
Query: 414 QLDTQN 419
+
Sbjct: 207 VKAAAH 212
Score = 96.0 bits (239), Expect = 1e-22
Identities = 45/247 (18%), Positives = 71/247 (28%), Gaps = 59/247 (23%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIH------- 103
V P + + + A CK E P +EW+K G V H
Sbjct: 13 VEHPSDLI-VSKGEPATLNCKAEGRPTPT----IEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 104 DFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQ 162
++ + D G Y C A N +G A A+L+ +
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE-------------------VA 108
Query: 163 YLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFH 221
L F + + + G+ A EC+ P + + W
Sbjct: 109 IL------------------RDDFRQNPSDVMVAVGEPAVMECQ--PPRGHPEPTISWKK 148
Query: 222 NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSKKS 280
+ P+ G L I D+G Y C N +G+ + L V + S
Sbjct: 149 DGSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
Query: 281 IQTETQH 287
H
Sbjct: 206 FVKAAAH 212
Score = 64.4 bits (157), Expect = 7e-12
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH--- 368
P + D+ V++ + A + G + W + G ++ H
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCK--AEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 369 ----DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
++ + D G Y C A N LGEAV+
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102
Score = 58.7 bits (142), Expect = 8e-10
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH----- 689
P + + + +G+ A +C+ G PT EW+ G ++ H
Sbjct: 9 PPRIVEHPSDL-IVSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 690 --DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSESLQ 740
++ + + D GVY+C A N GEAVS SL+V D ++
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS 119
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 111 bits (279), Expect = 4e-28
Identities = 38/228 (16%), Positives = 60/228 (26%), Gaps = 37/228 (16%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ + + ++E C +L W N PV I R L
Sbjct: 10 FPPEERPEVR-VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I + D G Y+C + V + L +
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFI---------------------PLIPIPER 107
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSG 229
Y K+ GQ EC N + + W P+ S
Sbjct: 108 TTKPY-------PADIVVQFKDVYALMGQNVTLECF---ALGNPVPDIRWRKVLEPMPST 157
Query: 230 SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ + + L I ED G+Y C A N G+ + V +
Sbjct: 158 AEISTSGA----VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 111 bits (278), Expect = 6e-28
Identities = 39/229 (17%), Positives = 66/229 (28%), Gaps = 39/229 (17%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI---KSGSRFTETNNFGF 240
P +KEG+ C + + W N P+ RF N G
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN-G- 66
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQG 300
L I D G Y+C + + +T +
Sbjct: 67 -NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY------------- 112
Query: 301 RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
+D++ Q E +G+ + W + P+ +
Sbjct: 113 --------------PADIVVQFKDVYALMGQNVTLEC--FALGNPVPDIRWRKVLEPMPS 156
Query: 361 SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ +ST G V L ED G Y C A N G+ + ++V++
Sbjct: 157 TAEIST---SGAV-LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 110 bits (277), Expect = 6e-28
Identities = 38/230 (16%), Positives = 64/230 (27%), Gaps = 38/230 (16%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL--EDSSRITTKHDFG 560
P + + V+EGK C L W NE P+ R G
Sbjct: 8 DPFPPEERPEVR-VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ +++V A D+G Y C ++ + I +
Sbjct: 67 --NLYIANVEASDKGNYSCFVSSPSITKSVFSKF--------------------IPLIPI 104
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P P + GQ+ +C + G+P W +
Sbjct: 105 PERTTKPYP------ADIVVQFKDV-YALMGQNVTLECFAL--GNPVPDIRWRKVLEPMP 155
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
+ L I D G+Y C+A N G+ + V++
Sbjct: 156 STAEISTSGA----VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 106 bits (266), Expect = 1e-27
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
+ + + + +EG + C++ D + +V W+ +++ ++ T G
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + D G Y C+ VN G+ + L V
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 101 bits (254), Expect = 5e-26
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
+ + + E + ++ D +VTW ++ S + ++ G
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L K D GTY C+ VN+ GE + + LFV+
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
Score = 100 bits (251), Expect = 1e-25
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ + + + EEG + + C++ D + +V W+ + LE+S + ++ G
Sbjct: 2 AMVSGQIMHA-VGEEGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + + D+G Y CK N GE + A + +K
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
Score = 99.3 bits (248), Expect = 3e-25
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
+ + + EG Y C++ D + + W+ +L+ ++ + ++ G
Sbjct: 2 AMVSGQIMHA-VGEEGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
L + D G Y CK +N GE S L VK +
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
Score = 89.3 bits (222), Expect = 1e-21
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ E GH + CK+E D + +V W+ R + ++ ++ G L +
Sbjct: 5 SGQIMHAV-GEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYV 62
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGS 145
D D GTY C+ VN G A L +G
Sbjct: 63 KDITKLDDGTYRCKVVNDYGEDSSYAELFVKGV 95
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 112 bits (281), Expect = 2e-27
Identities = 47/359 (13%), Positives = 80/359 (22%), Gaps = 88/359 (24%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRP-IHDFGYVALDIIDTIPEDSGTYTCR 126
C L P + + W+K+ + IH L + EDSG Y C
Sbjct: 23 DVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEK-LWFVPAKVEDSGHYYCV 80
Query: 127 AVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186
N ++ + + E
Sbjct: 81 VRNSSYCLRIKISAK----------------------------------FVENEPNLCYN 106
Query: 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTM----KVEWFHNNVPIKSGSRFTETNNFGFVA 242
++ ++ C + N K++W+ + P+ +
Sbjct: 107 AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK---DR 163
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L +M + G YTC A ++
Sbjct: 164 LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI------------------------ 199
Query: 303 QRTSIIEDTVSQAPVFTQPMRD-IHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS 361
+E+ PV P + + V + G W NG I
Sbjct: 200 ----TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVIDED 253
Query: 362 NRV------------STMHDFGYVALNFKYTYPED-SGTYTCRAVNELGEAVTSSTLFV 407
+ V + LN +TC A N G L
Sbjct: 254 DPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 98.6 bits (245), Expect = 1e-22
Identities = 38/319 (11%), Positives = 82/319 (25%), Gaps = 40/319 (12%)
Query: 314 QAPVFT--QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS-NRVSTMHDF 370
+A + + + N+ L P + K +TW ++ S + S +H
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE 430
L F EDSG Y C N + QK+ +
Sbjct: 61 KEK-LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLP-VA 118
Query: 431 DTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLED---- 486
E + +Q + + + + + + + + +
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAE-KHRGNY 177
Query: 487 ----TEPHKRPE----------VDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG 532
+ + + + RPV P V+ G C + G
Sbjct: 178 TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT--G 235
Query: 533 DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD------------LSHVRAED-EGIYIC 579
+ W N +++ + + + +S + + + + C
Sbjct: 236 QLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC 295
Query: 580 KATNALGEAVTTASMKIKT 598
A N G +
Sbjct: 296 FAKNTHGIDAAYIQLIYPV 314
Score = 95.2 bits (236), Expect = 2e-21
Identities = 32/242 (13%), Positives = 64/242 (26%), Gaps = 49/242 (20%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLI----PVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559
+ + + C + + K++W+++ KPL + +
Sbjct: 103 LCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK- 161
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELE 619
+ + +V + G Y C A+ + I+ E
Sbjct: 162 DRLIV--MNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI---------------TLEEN 204
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL 679
+P P+ P + T E+ G C V G + W NG +
Sbjct: 205 KPTRPVIVSPANE------------TMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVI 250
Query: 680 KMGSRF------------HVQHDFGYVTLDITKCVPAD-SGVYMCKAINRAGEAVSSTSL 726
+ + L+I++ + C A N G + L
Sbjct: 251 DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Query: 727 KV 728
Sbjct: 311 IY 312
Score = 85.2 bits (210), Expect = 4e-18
Identities = 30/216 (13%), Positives = 57/216 (26%), Gaps = 41/216 (18%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNN----VPIKSGSRFTETNNFGFVALDIMQCLPED 252
+ C L P +++ + W+ ++ V + SR + L + ED
Sbjct: 19 ANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKE----KLWFVPAKVED 73
Query: 253 SGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTV 312
SG Y C N+ + + Q +++ +
Sbjct: 74 SGHYYCVVRNSSYCLRIKISAKFVENEPNLCYN------------AQAIFKQKLPVAGDG 121
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
P + E + K+ W ++ P+ N +
Sbjct: 122 ----GLVCPYMEFFKNE-------------NNELPKLQWYKDCKPLLLDNIHFSGVK--- 161
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L + G YTC A T +E
Sbjct: 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197
Score = 84.8 bits (209), Expect = 5e-18
Identities = 30/247 (12%), Positives = 62/247 (25%), Gaps = 50/247 (20%)
Query: 504 PVFT-KPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL----EDSSRITTKHD 558
+ + I + C L P + + W++++ E +SRI +
Sbjct: 4 DKCKEREEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ + ED G Y C N+ S K E
Sbjct: 63 ----KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA-------------------KFVEN 99
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV----PVGDPTMRFEWFV 674
E Q +Q + C + + + +W+
Sbjct: 100 EPNLCYNAQAIFKQK--------------LPVAGDGGLVCPYMEFFKNENNELPKLQWYK 145
Query: 675 NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
+ L + + L + G Y C A + ++ +
Sbjct: 146 DCKPLLLDNIHFSGVK---DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLE 202
Query: 735 VSESLQP 741
++ +P
Sbjct: 203 ENKPTRP 209
Score = 71.3 bits (174), Expect = 2e-13
Identities = 29/208 (13%), Positives = 55/208 (26%), Gaps = 48/208 (23%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
K++W+K+ +P+ + + L +++ + G YTC A
Sbjct: 140 KLQWYKDCKPLLLDNIHFSGVK---DRLIVMNVAEKHRGNYTCHASYTYL---------- 186
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKN-CEIKEGQRA 201
G +T +EE P+ + E+ G +
Sbjct: 187 -GKQYPITRVIEFI------------------TLEENKPTRPVIVSPANETMEVDLGSQI 227
Query: 202 HFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA------------LDIMQCL 249
C + + W N I + + L+I +
Sbjct: 228 QLICNVT--GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285
Query: 250 PED-SGVYTCRAVNALGQAVTSGNLLVH 276
+TC A N G L+
Sbjct: 286 SRFYKHPFTCFAKNTHGIDAAYIQLIYP 313
Score = 50.5 bits (120), Expect = 1e-06
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
+ C + P + W+ + + + + + L DSG Y
Sbjct: 19 ANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHY 77
Query: 710 MCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKE 751
C N + S K + + Q +K+ +
Sbjct: 78 YCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAG 119
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 105 bits (264), Expect = 3e-27
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
+S PV ++D V+ + A F + G+ + W ++G I + D G
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKA--TGEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
L T DSG YTC N G +S L +++
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 101 bits (255), Expect = 4e-26
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
+ P+ T L++ + A F + P W + I G ++ + +
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEP----RPTAIWTKDGKAITQGGKYKLSEDK 59
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
G L+I + DSG+YTC N+ G +S L + +
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 100 bits (252), Expect = 1e-25
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
KP+ L T + A + + G+P W +G + G ++ + D G
Sbjct: 4 SSKPVIVTGLQDT-TVSSDSVAKFAVKAT--GEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
L+I K +DSG+Y C N AG SS L +K+
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 97.0 bits (242), Expect = 2e-24
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+PV LQ+ V A F+ + G+P W ++ K + + D G
Sbjct: 4 SSKPVIVTGLQDT-TVSSDSVAKFAVKA--TGEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+++ D G+Y C N+ G ++ + IK
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 77.3 bits (191), Expect = 2e-17
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
VT + + A F K P W K+G+ +T G +++ D G
Sbjct: 10 VTGLQDTT-VSSDSVAKFAVKATGEPRP------TAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
L+I T DSG YTC N G L
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 111 bits (279), Expect = 3e-27
Identities = 47/332 (14%), Positives = 86/332 (25%), Gaps = 92/332 (27%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
VEW P + G L + +++GTY C + L +
Sbjct: 32 VEWDGPISP----YWTLDPESPGST-LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVK 86
Query: 144 GSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203
A + + + EGQ A
Sbjct: 87 DPA-------------------------------------HSWNLLAQEVTVVEGQEAVL 109
Query: 204 ECRLIPVSDNTMK--VEWFHNNVPIK-SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260
C ++D +K V + + + GF+ I + DS Y C+
Sbjct: 110 PCL---ITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFI---IRKAKVLDSNTYVCKT 163
Query: 261 VNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ 320
+ G+ TS + + + + P
Sbjct: 164 MVN-GRESTSTGIWLK-------------------------------VNRVHPEPPQIKL 191
Query: 321 PMRDIHVAENQAAHF--EARLIPVGDSKLKVTWLRNG---VPIQASNRVSTMHDFGYVAL 375
+ +AA A L+ G + I ++ + AL
Sbjct: 192 EPSKLVRIRGEAAQIVCSAT----NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRAL 247
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ +D+G Y+C A N++G + V
Sbjct: 248 SLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Score = 95.0 bits (236), Expect = 1e-21
Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 41/235 (17%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+ Q + V EG+ A C I V R + +
Sbjct: 89 AHSWNLLAQEV-TVVEGQEAVLPCL-ITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG- 145
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ + D Y+CK G T+ + +K
Sbjct: 146 -FIIRKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVN----------------------- 180
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG---VEL 679
+ EP P + + G++A C G +E+
Sbjct: 181 -RVHPEP------PQIKLEPSKL-VRIRGEAAQIVCSAT--NAEVGFNVILKRGDTKLEI 230
Query: 680 KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
+ S F + L + D+G+Y C A N G ++ + +V
Sbjct: 231 PLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHH 285
Score = 88.9 bits (220), Expect = 2e-19
Identities = 35/218 (16%), Positives = 55/218 (25%), Gaps = 49/218 (22%)
Query: 68 AHFECKLEPVTDSNLK--VEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTC 125
A C +TD LK V + G + + I DS TY C
Sbjct: 107 AVLPC---LITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG--FIIRKAKVLDSNTYVC 161
Query: 126 RA-VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAP 184
+ VN L + + P
Sbjct: 162 KTMVNGRESTSTGIWL----------------------------------KVNRVHPEPP 187
Query: 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVE-WFHNN---VPIKSGSRFTETNNFGF 240
G+ A C ++ + + I S F +
Sbjct: 188 QIKLEPSKLVRIRGEAAQIVCS---ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV 244
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
AL + +D+G+Y+C A N +G + N V
Sbjct: 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282
Score = 82.7 bits (204), Expect = 2e-17
Identities = 36/225 (16%), Positives = 65/225 (28%), Gaps = 51/225 (22%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
AP+ S ++ G+ C + + VEW P + + + G
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCV---SNGS---VEWDGPISPYWT----LDPESPGST- 52
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L +++G Y C + T+ +L V
Sbjct: 53 LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDP------------------------ 88
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN 362
A + +++ V E Q A I K V+ +R G
Sbjct: 89 ------------AHSWNLLAQEVTVVEGQEAVLPCL-ITDPALKDSVSLMREGGRQVLRK 135
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
V + + DS TY C+ + G TS+ +++
Sbjct: 136 TVYFFSPWRG--FIIRKAKVLDSNTYVCKTMVN-GRESTSTGIWL 177
Score = 76.5 bits (188), Expect = 2e-15
Identities = 37/230 (16%), Positives = 59/230 (25%), Gaps = 52/230 (22%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
PV + VE G+ C + + VEW P T +
Sbjct: 4 APVIEPSGPEL-VVEPGETVTLRCV----SNGS--VEWDGPISP-----YWTLDPESPGS 51
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ + ++ G Y C TT + +K PA
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVK----------------------DPA 89
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
+ ++EGQ A C + G +
Sbjct: 90 HSWNLLAQEVT--------------VVEGQEAVLPCL-ITDPALKDSVSLMREGGRQVLR 134
Query: 683 SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSK 731
+ + I K DS Y+CK + E+ S+ LKV
Sbjct: 135 KTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV 182
Score = 74.6 bits (183), Expect = 9e-15
Identities = 45/309 (14%), Positives = 83/309 (26%), Gaps = 58/309 (18%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
APV ++ V + + V W P + S
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCV----SNGS--VEWDGPISPYWTLDPESPGS-----T 52
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSR 434
L + +++GTY C + + T+ L+V+ A E +
Sbjct: 53 LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTV----------- 101
Query: 435 FKRKEEEEVEVT-------QQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIR--KLE 485
E +E + + S ++ G +++ P IR K+
Sbjct: 102 ---VEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFF----SPWRGFIIRKAKVL 154
Query: 486 D-------------TEPHKRPEVDDNATKQRP-VFTKPLQNIDAVEEGKNAHFSCRLIPV 531
D + N P + G+ A C
Sbjct: 155 DSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLV-RIRGEAAQIVCS--AT 211
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD---LSHVRAEDEGIYICKATNALGEA 588
+ + + D Y + L+ V +D GIY C A+N +G
Sbjct: 212 NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR 271
Query: 589 VTTASMKIK 597
T + ++
Sbjct: 272 TATMNFQVV 280
Score = 46.1 bits (109), Expect = 2e-05
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 11/94 (11%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
+ G++ C EW + + + TL ++G
Sbjct: 16 VEPGETVTLRCVS------NGSVEWDGPISP-----YWTLDPESPGSTLTTRNATFKNTG 64
Query: 708 VYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
Y C + ++ L VK + + Q
Sbjct: 65 TYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQE 98
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 106 bits (265), Expect = 2e-26
Identities = 31/236 (13%), Positives = 59/236 (25%), Gaps = 56/236 (23%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
+ F + N G C+ + V +V W + ++ G
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQ-LQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 242 ---------ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
L I D+G Y C V+ +
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYV------------------ 101
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVTW 351
+ P F + D VA N + + G + + + W
Sbjct: 102 ------------------GLEGLPYFLEEPEDRTVAANTPFNLSCQ--AQGPPEPVDLLW 141
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L++ VP+ + L + +++C A N G + +
Sbjct: 142 LQDAVPLATAPGHGPQRSLHVPGL-------NKTSSFSCEAHNAKGVTTSRTATIT 190
Score = 97.7 bits (243), Expect = 2e-23
Identities = 37/235 (15%), Positives = 63/235 (26%), Gaps = 57/235 (24%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ F NI G C+ + V +V W R+ + LE + T+ G
Sbjct: 1 EESPFVGNPGNI-TGARGLTGTLRCQ-LQVQGEPPEVHWLRDGQILELADSTQTQVPLGE 58
Query: 562 VAMD---------LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGL 612
D ++ ++ D G Y C V+ + LE
Sbjct: 59 DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS-------QPGYVGLE------- 104
Query: 613 KKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFE 671
P F + + + C+ G P +
Sbjct: 105 ---------------------GLPYFLEEPEDR-TVAANTPFNLSCQA--QGPPEPVDLL 140
Query: 672 WFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726
W + V L Q +L + + + C+A N G S T+
Sbjct: 141 WLQDAVPLATAPGHGPQR-----SLHVPG--LNKTSSFSCEAHNAKGVTTSRTAT 188
Score = 83.4 bits (206), Expect = 2e-18
Identities = 32/237 (13%), Positives = 58/237 (24%), Gaps = 66/237 (27%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV---- 108
V P +I C+L V +V W ++G+ + + + G
Sbjct: 6 VGNPGNIT-GARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 109 -----ALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQ 162
L I D+G Y C Q + G
Sbjct: 64 WIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG------------------ 105
Query: 163 YLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVE 218
P F ++ + + C+ PV +
Sbjct: 106 --------------------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVD-----LL 140
Query: 219 WFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
W + VP+ + + L + ++C A NA G + +
Sbjct: 141 WLQDAVPLATAPGHGPQRSLHVPGL-------NKTSSFSCEAHNAKGVTTSRTATIT 190
Score = 61.5 bits (149), Expect = 7e-11
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 12/114 (10%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
E+ F G + C++ V W +G L++ Q G
Sbjct: 1 EESPFVGNPG-NITGARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGE 58
Query: 694 V---------TLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
L IT +D+G Y C VS + ++ + E
Sbjct: 59 DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEE 112
Score = 60.7 bits (147), Expect = 1e-10
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 11/107 (10%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
+ F +I A + + V +V WLR+G ++ ++ T G
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQ-LQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 374 ---------ALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESK 410
L D+G Y C V+ + +E
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 103 bits (258), Expect = 2e-26
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRF--TE 234
++ AP F LK+ +I EG F CR+ P K+ WF + I S +
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNP----KPKIYWFKDGKQISPKSDHYTIQ 59
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
+ G +L +D G YT A N G+ +G L+V + S
Sbjct: 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 96.3 bits (240), Expect = 5e-24
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH- 368
S AP F ++ + E F R+ G+ K K+ W ++G I + T+
Sbjct: 3 SGSSGAPFFEMKLKHYKIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQR 60
Query: 369 -DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
G +L+ + +D G YT A N G + L V++ S
Sbjct: 61 DLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 94.3 bits (235), Expect = 3e-23
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV--QHDF 691
P F L +I EG + CRV G+P + WF +G ++ S + +
Sbjct: 7 GAPFFEMKLKHY-KIFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
G +L T D G Y A N G + L V++ +
Sbjct: 64 GTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 92.0 bits (229), Expect = 2e-22
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR--ITTK 556
+ P F L++ + EG F+CR+ G+P K+ WF++ K + S +
Sbjct: 4 GSSGAPFFEMKLKHY-KIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQR 60
Query: 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
G ++ + +D+G Y A N G T + ++
Sbjct: 61 DLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103
Score = 68.9 bits (169), Expect = 2e-14
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIH--DFG 106
K K + + E F C++ +P K+ WFK+G+ ++ I G
Sbjct: 12 EMKLKHYK-IFEGMPVTFTCRVAGNPKP------KIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+L + +D G YT A N G L
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 105 bits (263), Expect = 4e-26
Identities = 42/230 (18%), Positives = 69/230 (30%), Gaps = 48/230 (20%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK-VEWFRN--EKPLEDSSRITTKHDFG 560
+ + G++ F C+ GD K + WF EK + RI+ +
Sbjct: 3 LQVDIVPSQGE-ISVGESKFFLCQ--VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 561 YV-AMDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ + + +D GIY C T G T ++KI
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI---------------------- 97
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
++K +F T E EG+ A C VV W G +
Sbjct: 98 --------------FQKLMFKNAPTPQ-EFKEGEDAVIVCDVV--SSLPPTIIWKHKGRD 140
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ + L I D G Y C+ A ++ ++V
Sbjct: 141 VILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Score = 102 bits (256), Expect = 4e-25
Identities = 33/232 (14%), Positives = 54/232 (23%), Gaps = 47/232 (20%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN---VPIKSGSRFTETNNF 238
+ EI G+ F C+ + + WF N + N+
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
L I +D+G+Y C G + V
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQS-EATVNV----------------------- 95
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ Q +F E + A V + W G +
Sbjct: 96 ------------KIFQKLMFKNAPTPQEFKEGEDAVIVCD--VVSSLPPTIIWKHKGRDV 141
Query: 359 QASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
R + + Y L + D GTY C + + V
Sbjct: 142 ILKKDVRFIVLSN-NY--LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 91.0 bits (226), Expect = 4e-21
Identities = 40/235 (17%), Positives = 61/235 (25%), Gaps = 61/235 (25%)
Query: 53 VTKPKSIENLRERGHAHFECK-----LEPVTDSNLKVEWFK-NGRPVTIG-HRFRPIHDF 105
P E + F C+ + + WF NG ++ R + +
Sbjct: 6 DIVPSQGE-ISVGESKFFLCQVAGDAKDK------DISWFSPNGEKLSPNQQRISVVWND 58
Query: 106 GYV-ALDIIDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQY 163
L I + +D+G Y C G E +
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNV----------------------- 95
Query: 164 LEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN 223
Q +F + E KEG+ A C VS + W H
Sbjct: 96 ---------------KIFQKLMFKNAPTPQEFKEGEDAVIVCD--VVSSLPPTIIWKHKG 138
Query: 224 VPI--KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ K RF +N L I D G Y C + ++ V
Sbjct: 139 RDVILKKDVRFIVLSN-N--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 66.8 bits (163), Expect = 9e-13
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL--EDSSRITTKHD 558
Q+ +F + +EG++A C V + W + + + R +
Sbjct: 98 FQKLMFKNAPTPQE-FKEGEDAVIVCD--VVSSLPPTIIWKHKGRDVILKKDVRFIVLSN 154
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
Y + + ++ DEG Y C+ + +++
Sbjct: 155 -NY--LQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Score = 54.8 bits (132), Expect = 9e-09
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 647 EIMEGQSAHYDCRVVPVGDP-TMRFEWF-VNGVELKMGS-RFHVQHDFGYV-TLDITKCV 702
EI G+S + C+V GD WF NG +L R V + TL I
Sbjct: 13 EISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNAN 70
Query: 703 PADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
D+G+Y C G +T ++K+ K +
Sbjct: 71 IDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA 106
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 107 bits (268), Expect = 9e-26
Identities = 50/342 (14%), Positives = 88/342 (25%), Gaps = 86/342 (25%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
VEW P + D L + +++GTY C L
Sbjct: 31 SVEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHL-- 83
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
Y+++ A + + + E Q A
Sbjct: 84 --------------------------------YVKDP---ARPWNVLAQEVVVFEDQDAL 108
Query: 203 FECRLIPVSDNTMKVEWFH-NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261
C + V P+ + ++ + GF I + S Y C A+
Sbjct: 109 LPCL-LTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFT---IHRAKFIQSQDYQCSAL 164
Query: 262 NALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321
G+ V S ++ + ++ + P T
Sbjct: 165 MG-GRKVMSISIRLK-------------------------------VQKVIPGPPALTLV 192
Query: 322 MRDIHVAENQAAHF--EARLIPVGDSKLKVTWLRNG--VPIQASNRVSTMHDFGYVALNF 377
++ +AA A + V V N + I + + LN
Sbjct: 193 PAELVRIRGEAAQIVCSASSVDVN---FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNL 249
Query: 378 KYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQN 419
+ +G Y+C A N G+ TS V A +
Sbjct: 250 DQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHHHH 291
Score = 95.0 bits (236), Expect = 1e-21
Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 43/231 (18%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR-NEKPLEDSSRITTKHDFGY 561
+ Q + V E ++A C + V R +PL + + G+
Sbjct: 89 ARPWNVLAQEV-VVFEDQDALLPCL-LTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGF 146
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + Y C A G V + S+++K + +
Sbjct: 147 T---IHRAKFIQSQDYQCSALMG-GRKVMSISIRLKVQ-------------------KVI 183
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELK 680
P P T + + G++A C N +L
Sbjct: 184 PGP-----------PALTLVPAELV-RIRGEAAQIVCSAS--SVDVNFDVFLQHNNTKLA 229
Query: 681 MGSR--FHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ + FH +TL++ + +G Y C A N G+ +S +V
Sbjct: 230 IPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Score = 91.6 bits (227), Expect = 2e-20
Identities = 41/243 (16%), Positives = 64/243 (26%), Gaps = 52/243 (21%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLK--VEWFK-NGRPVTIGHRFRPIHDFGYVA 109
+ + + E A C +TD L+ V + GRP+ + G
Sbjct: 93 NVLAQEVV-VFEDQDALLPC---LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--- 145
Query: 110 LDIIDTIPEDSGTYTCRAVNLVG-FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
I S Y C A+ + L
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRL---------------------------- 177
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM--KVEWFHNNVPI 226
+++ P T G+ A C S + V HNN +
Sbjct: 178 ------KVQKVIPGPPALTLVPAELVRIRGEAAQIVCS---ASSVDVNFDVFLQHNNTKL 228
Query: 227 KSGSRFTETNNFGFVA--LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
+ NN L++ Q + +G Y+C A N G+ TS V
Sbjct: 229 AIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHH 288
Query: 285 TQH 287
H
Sbjct: 289 HHH 291
Score = 85.4 bits (211), Expect = 2e-18
Identities = 45/311 (14%), Positives = 82/311 (26%), Gaps = 42/311 (13%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
PV + ++ V G+ V W P + D L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCV----GNGS--VEWDGPPSP-----HWTLYSDGSSSIL 53
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQ-------- 427
+ +++GTY C + + L+V+ A E + + Q
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL 113
Query: 428 ---NLEDTSRFKRKEEEEVE----VTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEK 480
LE R + + P ++ + + K +
Sbjct: 114 TDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSI 173
Query: 481 IRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVE 539
+L+ + P P T + G+ A C V
Sbjct: 174 SIRLKVQKVIPGP----------PALTLVPAEL-VRIRGEAAQIVCS--ASSVDVNFDVF 220
Query: 540 WFRNEKPLEDSSRITTKHDFGYVAMDL--SHVRAEDEGIYICKATNALGEAVTTASMKIK 597
N L + ++ + L V + G Y C A+N G+ T+ ++
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Query: 598 TKAGLQLETQH 608
AG H
Sbjct: 281 ESAGNSHHHHH 291
Score = 81.2 bits (200), Expect = 7e-17
Identities = 36/231 (15%), Positives = 59/231 (25%), Gaps = 54/231 (23%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
PV + + V+ G C G+ + VEW P T D
Sbjct: 4 IPVIEPSVPEL-VVKPGATVTLRCV----GNGS--VEWDGPPSP-----HWTLYSDGSSS 51
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ ++ ++ G Y C + +K PA
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD----------------------PA 89
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF-VNGVELKM 681
P + + E Q A C + V G L
Sbjct: 90 RPWNVLAQEVV--------------VFEDQDALLPCL-LTDPVLEAGVSLVRVRGRPLMR 134
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSK 731
+ + G I + S Y C A+ + +S + LKV+
Sbjct: 135 HTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKV 182
Score = 77.7 bits (191), Expect = 9e-16
Identities = 33/225 (14%), Positives = 61/225 (27%), Gaps = 53/225 (23%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P+ S+ +K G C VEW P + +++ ++ L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVG------NGSVEWDGPPSP--HWTLYSDGSSS---IL 53
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
+++G Y C + +L V
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDP------------------------- 88
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVPIQASN 362
A + +++ V E+Q A + + V+ +R G P+
Sbjct: 89 -----------ARPWNVLAQEVVVFEDQDALLPCL-LTDPVLEAGVSLVRVRGRPLMRHT 136
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
S G S Y C A+ G V S ++ +
Sbjct: 137 NYSFSPWHG---FTIHRAKFIQSQDYQCSALMG-GRKVMSISIRL 177
Score = 47.7 bits (113), Expect = 8e-06
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 11/94 (11%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
+ G + C EW + + + D L ++G
Sbjct: 16 VKPGATVTLRCVG------NGSVEW-----DGPPSPHWTLYSDGSSSILSTNNATFQNTG 64
Query: 708 VYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
Y C ++ L VK + + Q
Sbjct: 65 TYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQE 98
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 100 bits (250), Expect = 2e-25
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIK-SGSRFTETNNFG 239
P F SL + ++EGQ R+ P V W N P++ RF E G
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEP----KPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L I+ D+G YTC+AVN G L V +
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 98.5 bits (246), Expect = 7e-25
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS-NRVSTMHDFGYV 373
P F + D V E Q R+ G+ K V+WLRN P++ R + + G
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L D+G YTC+AVNE G + L V +
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 94.6 bits (236), Expect = 1e-23
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-EDSSRITTKH 557
+K P F L + +V EG++ S R+ G+P V W RN +P+ D R +
Sbjct: 1 GSKAPPTFKVSLMDQ-SVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEA 57
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ G + + D G Y CKA N G A ++++ +
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 93.1 bits (232), Expect = 5e-23
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS-RFHVQHDFG 692
P F L + EGQ RV G+P W N ++ RF + + G
Sbjct: 4 APPTFKVSLMDQ-SVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I D+G Y CKA+N G L+V+ +
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 75.8 bits (187), Expect = 7e-17
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTI-GHRFRPIHDFGY 107
+RE ++ +P V W +N +PV RF + G
Sbjct: 9 KVSLMDQS-VREGQDVIMSIRVQGEPKP------VVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRG 144
L I+ D+G YTC+AVN G + +A L+ RG
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 103 bits (257), Expect = 3e-25
Identities = 36/242 (14%), Positives = 69/242 (28%), Gaps = 54/242 (22%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED----SSRITTKHDF 559
+ + E SC G + +VEW ++ +++IT ++
Sbjct: 5 VTVHSSEPEVR-IPENNPVKLSCA--YSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 560 GYVAMD----LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
+ V ED G Y C + G + +K+
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV----------------- 104
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
P + S G A C G P + WF +
Sbjct: 105 -----------------LVPPSKPTVNI-PSSATIGNRAVLTCSEQ-DGSPPSEYTWFKD 145
Query: 676 GVELKMGSRFHVQHDFGYV-------TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
G+ + + L +D+G Y C+A N G ++S ++++
Sbjct: 146 GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Query: 729 KS 730
++
Sbjct: 206 EA 207
Score = 101 bits (253), Expect = 1e-24
Identities = 35/242 (14%), Positives = 64/242 (26%), Gaps = 53/242 (21%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
+ +S I E C ++ +VEW + + +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCA--YSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 243 --------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
+ ED+G YTC G + + +
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL------------------- 102
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
V P A G + TW ++
Sbjct: 103 ----------------IVLVPPSKPTVNIPSSATIGNRAVLTCS-EQDGSPPSEYTWFKD 145
Query: 355 GVPIQASNRVS-TMHDFGYVA------LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
G+ + + + + + YV L F D+G Y+C A N G +TS+ + +
Sbjct: 146 GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Query: 408 ES 409
E+
Sbjct: 206 EA 207
Score = 87.7 bits (217), Expect = 8e-20
Identities = 37/241 (15%), Positives = 62/241 (25%), Gaps = 54/241 (22%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA-- 109
TV + + E C S+ +VEW + T + Y
Sbjct: 6 TVHSSEPEVRIPENNPVKLSCAYS--GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 110 ------LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQY 163
+ ED+GTYTC G + +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVK------------------------ 99
Query: 164 LEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN 223
++ P T G RA C + WF +
Sbjct: 100 ------------VKLIVLVPPSKPTVNIPSSATIGNRAVLTCS-EQDGSPPSEYTWFKDG 146
Query: 224 VPIKSGSRFTETNNFGFV-------ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ + + + T + L D+G Y+C A N G +TS + +
Sbjct: 147 IVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
Query: 277 S 277
+
Sbjct: 207 A 207
Score = 72.7 bits (178), Expect = 1e-14
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P + G A +C G P + WF++ + + + T
Sbjct: 107 PPSKPTVNIPS-SATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 563 AMD-------LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
++ + A D G Y C+A N G +T+ +++++
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 98.5 bits (246), Expect = 6e-25
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTE 234
AP F++ LK+C + EGQ +C + P ++ W N PI+ E
Sbjct: 5 SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTP----VPRITWLLNGQPIQYARSTCE 60
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L I LPED G YTC A NALGQ S + VH
Sbjct: 61 AGVAE---LHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 95.5 bits (238), Expect = 8e-24
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 309 EDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
+ AP F+ ++D V E Q + + G ++TWL NG PIQ +
Sbjct: 5 SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQYARSTC--- 59
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ G L+ + PED GTYTC A N LG+ S+ + V
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 89.3 bits (222), Expect = 1e-21
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F+ L++ AV EG++ C + G P ++ W N +P++ + + G
Sbjct: 12 PSFSSVLKDC-AVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQYARST---CEAGVAE 65
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + ED G Y C A NALG+ +A + +
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 86.2 bits (214), Expect = 1e-20
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P F+ +L ++EGQ C V G P R W +NG ++ + G
Sbjct: 10 VAPSFSSVLKDC-AVIEGQDFVLQCSVR--GTPVPRITWLLNGQPIQYARSTC---EAGV 63
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L I +P D G Y C A N G+ S + V
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 70.0 bits (172), Expect = 6e-15
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 68 AHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTY 123
+C + P ++ W NG+P+ + G L I D +PED GTY
Sbjct: 29 FVLQCSVRGTPVP------RITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTY 79
Query: 124 TCRAVNLVGFAEVQATL 140
TC A N +G A +
Sbjct: 80 TCLAENALGQVSCSAWV 96
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 100 bits (251), Expect = 7e-25
Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 39/167 (23%)
Query: 118 EDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIE 177
+ SG+ +N A L+ E E
Sbjct: 8 KASGSSPTSPINANKVENEDAFLE--------------------------------EVAE 35
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFT-E 234
E P FT ++ + E+ EG A F+C++ P +V WF ++ P+K F +
Sbjct: 36 EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYP----DPEVMWFKDDNPVKESRHFQID 91
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
+ G +L I + +D YTC+AVN+LG+A + LLV +
Sbjct: 92 YDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKE 138
Score = 100 bits (250), Expect = 8e-25
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Query: 275 VHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAH 334
+ + S ++E + E+ P FT+ + D+ V E AA
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR 60
Query: 335 FEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAV 393
F+ ++ G +V W ++ P++ S +D G +L +D YTC+AV
Sbjct: 61 FDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118
Query: 394 NELGEAVTSSTLFVESKAS 412
N LGEA ++ L VE+
Sbjct: 119 NSLGEATCTAELLVETMGK 137
Score = 97.2 bits (242), Expect = 9e-24
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
+ A E+ + KP FT+ + E++EG +A +DC+V G P WF +
Sbjct: 25 NEDAFLEEVAEEKPHVKPYFTKTIL-DMEVVEGSAARFDCKVE--GYPDPEVMWFKDDNP 81
Query: 679 LKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+K F + +D G +L I++ D Y CKA+N GEA + L V++
Sbjct: 82 VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEG 141
Query: 738 SLQPDAWKKIQLK 750
+ + ++ + +
Sbjct: 142 EGEGEEDEEEEEE 154
Score = 93.0 bits (231), Expect = 3e-22
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD-FG 560
+P FTK + +++ V EG A F C++ G P +V WF+++ P+++S +D G
Sbjct: 40 VKPYFTKTILDME-VVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
++ +S V +D+ Y CKA N+LGEA TA + ++T + EG + +E E+
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMG--KEGEGEGEGEEDEEEEEE 154
Score = 71.0 bits (174), Expect = 1e-14
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHD-FGY 107
+E + E A F+CK+ +P +V WFK+ PV F+ +D G
Sbjct: 45 TKTILDME-VVEGSAARFDCKVEGYPDP------EVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+L I + +D YTC+AVN +G A A L
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 100 bits (250), Expect = 2e-24
Identities = 35/233 (15%), Positives = 65/233 (27%), Gaps = 59/233 (25%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRF----TETNN 237
+ + +GQ C V ++W + +++ + +E +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCS---VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
GF L + D+G Y C+ + ++ L
Sbjct: 59 IGF--LSLKSVERSDAGRYWCQVEDGGETEISQPVWL----------------------- 93
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVTWLRNGV 356
TV P FT +D+ V N VG + + + W R
Sbjct: 94 -------------TVEGVPFFTVEPKDLAVPPNAPFQLSCE--AVGPPEPVTIVWWRGTT 138
Query: 357 PIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVE 408
I T S ++C A N G A + + T+ ++
Sbjct: 139 KIGGPAPSP---------SVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
Score = 99.5 bits (248), Expect = 3e-24
Identities = 31/230 (13%), Positives = 64/230 (27%), Gaps = 54/230 (23%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ V +G+ +C G ++W ++ +++ ++ +
Sbjct: 3 LKLMGAPVKL-TVSQGQPVKLNCS--VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59
Query: 564 MDL--SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
L V D G Y C+ + ++ L +E
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEIS-------QPVWLTVE---------------- 96
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELK 680
P FT + C VG P + W+ ++
Sbjct: 97 ------------GVPFFTVEPKDL-AVPPNAPFQLSCEA--VGPPEPVTIVWWRGTTKIG 141
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
L++T S ++ C+A N G A S T ++ ++
Sbjct: 142 -------GPAPSPSVLNVTG--VTQSTMFSCEAHNLKGLASSRTATVHLQ 182
Score = 81.4 bits (201), Expect = 6e-18
Identities = 34/235 (14%), Positives = 60/235 (25%), Gaps = 71/235 (30%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ P + + + C +E P ++W K+G V + +
Sbjct: 6 MGAPVKLT-VSQGQPVKLNCSVEGMEEPD------IQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 109 --ALDIIDTIPEDSGTYTCRAVNLVGFAE-VQATLQCRGSAGILTSTQNETGLEQIQYLE 165
L + D+G Y C+ + L G
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG--------------------- 97
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFH 221
P FT K+ + C PV+ + W+
Sbjct: 98 -----------------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVT-----IVWWR 135
Query: 222 NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
I + L++ S +++C A N G A +S VH
Sbjct: 136 GTTKIGGPAPSPSV-------LNVTG--VTQSTMFSCEAHNLKGLA-SSRTATVH 180
Score = 62.5 bits (152), Expect = 2e-11
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV- 373
+ V++ Q G + + W+++G +Q +++ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCS--VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59
Query: 374 -ALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVES 409
L+ K D+G Y C+ + ++ L VE
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 59.8 bits (145), Expect = 2e-10
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV--TLDITKCVPA 704
+ +GQ +C V G +W +G ++ + ++ + L + +
Sbjct: 13 TVSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS 70
Query: 705 DSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
D+G Y C+ + +S L V+ E
Sbjct: 71 DAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE 104
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 100 bits (251), Expect = 2e-24
Identities = 40/253 (15%), Positives = 68/253 (26%), Gaps = 61/253 (24%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR-----------NEKPLEDSS 551
+ ++ V E ++ +C G + +VEW N + +
Sbjct: 1 KGSVYTAQSDVQ-VPENESIKLTCT--YSGFSSPRVEWKFVQGSTTALVCYNSQITAPYA 57
Query: 552 RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEG 611
T G + S V +D G Y C + G+ S+ +
Sbjct: 58 DRVTFSSSG---ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV------------- 101
Query: 612 LKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFE 671
P + S + G A C G P +
Sbjct: 102 ---------------------LVPPSKPTISV-PSSVTIGNRAVLTCSEH-DGSPPSEYS 138
Query: 672 WFVNGVELKMGSRFHVQHDFGYV--------TLDITKCVPADSGVYMCKAINRAGEAVSS 723
WF +G+ + + L DSG Y C+A N G A+ S
Sbjct: 139 WFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS 198
Query: 724 TSLKVKSKSDIVS 736
+ + + V
Sbjct: 199 EAAHMDAVELNVG 211
Score = 96.6 bits (240), Expect = 8e-23
Identities = 33/245 (13%), Positives = 63/245 (25%), Gaps = 56/245 (22%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRL--IPV-------SDNTMKVEWFHNNVPIKSGSRFTE 234
T+ + ++ E + C + +N+ +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
++ G + +D+G YTC GQ ++ +
Sbjct: 62 FSSSG---ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL------------------- 99
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
TV P V A G + +W ++
Sbjct: 100 ----------------TVLVPPSKPTISVPSSVTIGNRAVLTCS-EHDGSPPSEYSWFKD 142
Query: 355 GVPIQASNRVSTMHDFGYVA--------LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLF 406
G+ + ++ T L F DSG Y C+A N G A+ S
Sbjct: 143 GISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
Query: 407 VESKA 411
+++
Sbjct: 203 MDAVE 207
Score = 77.7 bits (191), Expect = 2e-16
Identities = 37/241 (15%), Positives = 59/241 (24%), Gaps = 55/241 (22%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT--------IGHRFRPIH 103
+V +S + E C S+ +VEW T I +
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYS--GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 104 DFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQY 163
F + +D+G YTC G + ++ +
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH-------------------LTV 101
Query: 164 LEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN 223
L P T + G RA C + WF +
Sbjct: 102 LV-----------------PPSKPTISVPSSVTIGNRAVLTCS-EHDGSPPSEYSWFKDG 143
Query: 224 VPIKSGSRFTETNNFGFVA--------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ + + L DSG Y C+A N G A+ S +
Sbjct: 144 ISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Query: 276 H 276
Sbjct: 204 D 204
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 97.1 bits (242), Expect = 3e-24
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Query: 309 EDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
P F + R + V A + + +G+ V W + G + AS R+S
Sbjct: 7 SGDQGSPPCFLRFPRPVRVVSGAEAELKCVV--LGEPPPVVVWEKGGQQLAASERLSFPA 64
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
D L P D+G Y CRA N GEA ++ + V
Sbjct: 65 DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 97.1 bits (242), Expect = 3e-24
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
PM Q P F + ++ G A C V+ G+P W G +L
Sbjct: 2 PMKASSGDQGSPPCFLRFPRPV-RVVSGAEAELKCVVL--GEPPPVVVWEKGGQQLAASE 58
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
R D L +T +P D+GVY+C+A N AGEA ++ ++ V
Sbjct: 59 RLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 94.0 bits (234), Expect = 3e-23
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Query: 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRF 232
+ P F + + G A +C V V W + + R
Sbjct: 4 KASSGDQGSPPCFLRFPRPVRVVSGAEAELKCV---VLGEPPPVVVWEKGGQQLAASERL 60
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+ + L + LP D+GVY CRA NA G+A + + V
Sbjct: 61 SFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 94.0 bits (234), Expect = 4e-23
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F + + + V G A C + +G+P V W + + L S R++ D
Sbjct: 14 PCFLRFPRPVR-VVSGAEAELKCVV--LGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 70
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ L+ D G+Y+C+A NA GEA A++ +
Sbjct: 71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 75.1 bits (185), Expect = 1e-16
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ P+ + + A +C + P V W K G+ + R D
Sbjct: 17 LRFPRPVR-VVSGAEAELKCVVLGEPPP------VVVWEKGGQQLAASERLSFPADGAEH 69
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L + +P D+G Y CRA N G A A +
Sbjct: 70 GLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 103 bits (258), Expect = 3e-24
Identities = 46/342 (13%), Positives = 81/342 (23%), Gaps = 83/342 (24%)
Query: 76 PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGT-YTCRAVNLVGFA 134
D + V W K G+ +R + + L I + DS Y C G
Sbjct: 62 RYNDKDNVVNWEKIGKTRRPLNRR--VKNG---DLWIANYTSNDSHRRYLCTVTTKNGDC 116
Query: 135 EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCE 194
+ + P
Sbjct: 117 VQGI-------------------------------------VRSHIRKPPSCIPETYELG 139
Query: 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG 254
+ C I + + + W+ NN + + L I EDSG
Sbjct: 140 THDKYGIDLYCG-ILYAKHYNNITWYKNNQELIIDGTKYSQSG---QNLIIHNPELEDSG 195
Query: 255 VYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQ 314
Y C + + ++ H
Sbjct: 196 RYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH--------------------------- 228
Query: 315 APVFTQPMRDIHVAENQAAHF--EARLIPVGDSKLKVTWLRNGVPIQASNR-----VSTM 367
I+V + A+ A + + + W I + +++
Sbjct: 229 -RFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSS 287
Query: 368 HDFGYVALNFKYTYPEDSG-TYTCRAVNELGEAVTSSTLFVE 408
L F+ E G TYTCR N + ++T+ +E
Sbjct: 288 GGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 94.1 bits (233), Expect = 5e-21
Identities = 25/237 (10%), Positives = 57/237 (24%), Gaps = 41/237 (17%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
++ P + + C I + W++N + L ++
Sbjct: 126 RKPPSCIPETYEL-GTHDKYGIDLYCG-ILYAKHYNNITWYKNNQELIIDGTKYSQSG-- 181
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ + + ED G Y C + + +
Sbjct: 182 -QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL-------------TVIPSQD 227
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV--PVGDPTMRFEWFVNGVE 678
+ +P + G+ A+ C V + + +W
Sbjct: 228 HRFKLILDP---------------KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW 272
Query: 679 LKMG-----SRFHVQHDFGYVTLDITKCVPADSG-VYMCKAINRAGEAVSSTSLKVK 729
+ S TL G Y C+ N + +T++ ++
Sbjct: 273 IIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 79.5 bits (195), Expect = 4e-16
Identities = 29/232 (12%), Positives = 59/232 (25%), Gaps = 41/232 (17%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
+ ++ C + + W+KN + + I + L
Sbjct: 130 SCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELIIDGT-KYSQSGQN--LI 185
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
I + EDSG Y C + ++ + T +
Sbjct: 186 IHNPELEDSGRYDCYVHYDDVRIKNDIV---------VSRCKILTVIPS----------- 225
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECR--LIPVSDNTMKVEWFHNNVPIKSG 229
+ G+ A+ C + + + ++W + + I
Sbjct: 226 ---------QDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGL 276
Query: 230 -----SRFTETNNFGFVALDIMQCLPEDSG-VYTCRAVNALGQAVTSGNLLV 275
S T + L E G YTCR N + +++
Sbjct: 277 DFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 75.6 bits (185), Expect = 7e-15
Identities = 30/230 (13%), Positives = 48/230 (20%), Gaps = 53/230 (23%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVS-------DNTMKVEWFHNNVPIKSGSRFTETN 236
N G+ +C I S D V W + +R +
Sbjct: 30 SCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG 89
Query: 237 NFGFVALDIMQCLPEDSG-VYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
+ L I DS Y C G V
Sbjct: 90 D-----LWIANYTSNDSHRRYLCTVTTKNGDCV--------------------------- 117
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
I+ + + P ++ + I +TW +N
Sbjct: 118 ---------QGIVRSHIRKPPSCIPETYELGTHDKYGIDLY-CGILYAKHYNNITWYKNN 167
Query: 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
+ + L EDSG Y C + +
Sbjct: 168 QELIIDGTKYSQSG---QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214
Score = 68.7 bits (167), Expect = 1e-12
Identities = 28/249 (11%), Positives = 54/249 (21%), Gaps = 51/249 (20%)
Query: 516 VEEGKNAHFSCRLIP-------VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH 568
G+ C I D V W + K K+ ++ ++
Sbjct: 41 AALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR-PLNRRVKNGDLWI---ANY 96
Query: 569 VRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQE 628
+ Y+C T G+ V ++ +
Sbjct: 97 TSNDSHRRYLCTVTTKNGDCVQGI---------VRSHIR--------------------- 126
Query: 629 PERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ 688
+ P + C ++ W+ N EL + + Q
Sbjct: 127 -----KPPSCIPETY-ELGTHDKYGIDLYCGILY-AKHYNNITWYKNNQELIIDGTKYSQ 179
Query: 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQ 748
L I DSG Y C + + ++
Sbjct: 180 SG---QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP 236
Query: 749 LKEAEMNKP 757
+ +P
Sbjct: 237 KINVTIGEP 245
Score = 65.2 bits (158), Expect = 2e-11
Identities = 41/337 (12%), Positives = 85/337 (25%), Gaps = 48/337 (14%)
Query: 294 LQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIP-------VGDSK 346
+ + + + A + + I D
Sbjct: 8 ITEFFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKD 67
Query: 347 LKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGT-YTCRAVNELGEAVTSSTL 405
V W + G + NR L DS Y C + G+ V
Sbjct: 68 NVVNWEKIGKTRRPLNRRVKNG-----DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVR 122
Query: 406 FVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFT-------VQLNGP 458
K + E ++ + + T + ++G
Sbjct: 123 SHIRKPPSCIPETYELGTHDKYGIDLYCGI-------LYAKHYNNITWYKNNQELIIDGT 175
Query: 459 TELVEGEGTIITDTQH----------PKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTK 508
G+ II + + +I+ K V + + +
Sbjct: 176 KYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILD 235
Query: 509 PLQNIDAVEEGKNAHFSCR--LIPVGDPTLKVEWFRNEKPLEDS-----SRITTKHDFGY 561
P N V G+ A+ +C + + ++W + S +T+
Sbjct: 236 PKIN---VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITE 292
Query: 562 VAMDLSHVRAEDEG-IYICKATNALGEAVTTASMKIK 597
+ +V E G Y C+ N + T ++ ++
Sbjct: 293 ATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 96.6 bits (241), Expect = 3e-24
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN 236
++ A FT L N +++E A F C+ V W + +++ + +
Sbjct: 2 SSGSSGANCFTEELTNLQVEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQ 58
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
+ L I DS YTC GQA + LLV ++S
Sbjct: 59 EGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98
Score = 92.0 bits (229), Expect = 2e-22
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
S A FT+ + ++ V E A F + VTW + + ++AS + +
Sbjct: 6 SGANCFTEELTNLQVEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQEGLT 62
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ L DS TYTC G+A + + L V+ + S
Sbjct: 63 LRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98
Score = 82.8 bits (205), Expect = 2e-19
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
+ FT+ L N+ VEE A F+C+ P V W + L S + +
Sbjct: 4 GSSGANCFTEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQE 59
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + +S + D Y C G+A + A + ++ +
Sbjct: 60 GLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGR 96
Score = 78.1 bits (193), Expect = 1e-17
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
FT+ LT ++ E +A + C+ P W +EL+ + + +
Sbjct: 9 NCFTEELTNL-QVEEKGTAVFTCKT---EHPAATVTWRKGLLELRASGKHQPSQEGLTLR 64
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK-SDIVS 736
L I+ ADS Y C G+A S L V+ + S S
Sbjct: 65 LTISALEKADSDTYTCD----IGQAQSRAQLLVQGRRSGPSS 102
Score = 69.7 bits (171), Expect = 9e-15
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ +++ + E+G A F CK V W K + + +P + + L I
Sbjct: 12 TEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRG 144
DS TYTC G A+ +A L +G
Sbjct: 68 SALEKADSDTYTCDI----GQAQSRAQLLVQG 95
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 99.2 bits (246), Expect = 8e-24
Identities = 33/213 (15%), Positives = 55/213 (25%), Gaps = 27/213 (12%)
Query: 58 SIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIP 117
+ + +E G C E + WFK+G+ + + + G A D
Sbjct: 11 KVYDYQEDGSVLLTCDAEAKN-----ITWFKDGKMIGFLTEDKKKWNLGSNAKD------ 59
Query: 118 EDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIE 177
G Y C+ LQ G + + + +D K E
Sbjct: 60 -PRGMYQCKGSQ-----NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEE 113
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
+ S+ G C P ++ W HN+ I +
Sbjct: 114 MGGITQTPYKVSI------SGTTVILTCPQYP----GSEILWQHNDKNIGGDEDDKNIGS 163
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTS 270
E SG Y C + +
Sbjct: 164 DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 98.4 bits (244), Expect = 2e-23
Identities = 27/223 (12%), Positives = 55/223 (24%), Gaps = 27/223 (12%)
Query: 508 KPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS 567
L + +E + +C + WF++ K + + K + G A D
Sbjct: 7 NHLVKVYDYQEDGSVLLTC-----DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD-- 59
Query: 568 HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQ 627
G+Y CK + + + + + ++ + +
Sbjct: 60 -----PRGMYQCKGSQNKSKPLQVYYR---------MGSADDAKKDAAKKDDAKKDDAKK 105
Query: 628 EPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV 687
+ E+ I G + C P W N +
Sbjct: 106 DGSDGNEEMGGITQTPYKVSI-SGTTVILTCPQ----YPGSEILWQHNDKNIGGDEDDKN 160
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
SG Y+C E + L+ +
Sbjct: 161 IGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203
Score = 92.6 bits (229), Expect = 1e-21
Identities = 26/213 (12%), Positives = 54/213 (25%), Gaps = 26/213 (12%)
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
+K + +E C + WF + I + + N G A D
Sbjct: 10 VKVYDYQEDGSVLLTC---DAEAKN--ITWFKDGKMIGFLTEDKKKWNLGSNAKD----- 59
Query: 250 PEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIE 309
G+Y C+ + + + + + ++ + +
Sbjct: 60 --PRGMYQCKGSQNKSKPLQVYYRMGSADDA---------KKDAAKKDDAKKDDAKKDGS 108
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
D + TQ + ++ P + + W N I +
Sbjct: 109 DGNEEMGGITQTPYKVSIS-GTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGS 163
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
+++ E SG Y C E
Sbjct: 164 DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 60.3 bits (145), Expect = 2e-10
Identities = 11/108 (10%), Positives = 21/108 (19%), Gaps = 4/108 (3%)
Query: 28 QNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWF 87
+ K+ + C P ++ + W
Sbjct: 91 DAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSE----ILWQ 146
Query: 88 KNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135
N + + + I + E SG Y C
Sbjct: 147 HNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194
Score = 58.8 bits (141), Expect = 6e-10
Identities = 13/105 (12%), Positives = 23/105 (21%), Gaps = 4/105 (3%)
Query: 487 TEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKP 546
+ K D + + G +C P ++ W N+K
Sbjct: 96 DDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ----YPGSEILWQHNDKN 151
Query: 547 LEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
+ E G Y+C + E
Sbjct: 152 IGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 56.4 bits (135), Expect = 4e-09
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+TW ++G I + G A + G Y C+ + L V
Sbjct: 32 ITWFKDGKMIGFLTEDKKKWNLGSNAK-------DPRGMYQCKGSQNKSK-----PLQVY 79
Query: 409 SKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPT 459
+ D + +AA + +D + EE+ Q + V ++G T
Sbjct: 80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTT 130
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 95.9 bits (239), Expect = 9e-24
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIK 227
+ +AP+F ++ ++ EG EC++ IP K+ W NN ++
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIP----PPKLFWKRNNEMVQ 57
Query: 228 SGSRFTET--NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
+ +N G V L I +D+G YT AVN G + L V ++ +
Sbjct: 58 FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113
Score = 94.0 bits (234), Expect = 5e-23
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS 361
+AP+F + V E + E + K+ W RN +Q +
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQ--ISAIPPPKLFWKRNNEMVQFN 59
Query: 362 -NRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+R+S D G V L K +D+G YT AVNE G ++ L V ++
Sbjct: 60 TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 91.3 bits (227), Expect = 4e-22
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH--V 687
P+F +++EG S +C++ P + W N ++ +
Sbjct: 10 HEHKRAPMFIYKPQSK-KVLEGDSVKLECQIS--AIPPPKLFWKRNNEMVQFNTDRISLY 66
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735
Q + G VTL I D+G Y A+N AG +T L V ++ +
Sbjct: 67 QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQT 114
Score = 89.0 bits (221), Expect = 3e-21
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 488 EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL 547
H + K+ P+F Q+ V EG + C+ P K+ W RN + +
Sbjct: 3 HHHHHHSHEH---KRAPMFIYKPQSKK-VLEGDSVKLECQ--ISAIPPPKLFWKRNNEMV 56
Query: 548 E-DSSRITTKHD-FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ ++ RI+ D G V + + V +D G Y A N G + + +
Sbjct: 57 QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 66.3 bits (162), Expect = 2e-13
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIH--DFG 106
+ KP+S + + E EC++ P K+ W +N V ++ + G
Sbjct: 19 IYKPQSKK-VLEGDSVKLECQISAIPPP------KLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
V L I D +D+G YT AVN G L
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 94.3 bits (235), Expect = 2e-23
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
++ F +LK+ E+ EG A C +S V+W + N ++ G +++
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSLRQE 59
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+ L + P+DSG Y+C G TS L V +
Sbjct: 60 GAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTAL 96
Score = 90.1 bits (224), Expect = 7e-22
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 311 TVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ S PV F + ++D+ V E AA + V W ++ ++ S +
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSLRQE 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ L + P+DSG Y+C G+ TS+TL V +
Sbjct: 60 GAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTAL 96
Score = 81.2 bits (201), Expect = 9e-19
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
F + L++++ V EG A C + V+W L + + + + +
Sbjct: 9 VRFQEALKDLE-VLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLE 64
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + ++R +D G Y C G+ T+A++ +
Sbjct: 65 LVVRNLRPQDSGRYSCSF----GDQTTSATLTVT 94
Score = 77.8 bits (192), Expect = 1e-17
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
F + L E++EG +A C + V P +W L+ G ++ ++ + +
Sbjct: 9 VRFQEALKDL-EVLEGGAATLRCVLSSVAAPV---KWCYGNNVLRPGDKYSLRQEGAMLE 64
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L + P DSG Y C G+ +S +L V +
Sbjct: 65 LVVRNLRPQDSGRYSCS----FGDQTTSATLTVTAL 96
Score = 73.1 bits (180), Expect = 7e-16
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
K +E + E G A C ++ V+W + G ++ + + L +
Sbjct: 12 QEALKDLE-VLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
+ P+DSG Y+C + A +
Sbjct: 68 RNLRPQDSGRYSCSFGDQTTSATL 91
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 93.6 bits (233), Expect = 4e-23
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 2/99 (2%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ A R + V E ++A F G+ VTWLR G + S R
Sbjct: 9 SKTTLAARILTKPRSMTVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTT 66
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
D G Y+ N G+ TL ++
Sbjct: 67 KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 92.0 bits (229), Expect = 2e-22
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFHNNVPIKSGSRFTET 235
TT A T ++ + EG+ A F C +P V W + + +R T
Sbjct: 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVP------TVTWLRKGQVLSTSARHQVT 64
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+I D G Y+ N+ G+ L +
Sbjct: 65 TTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 91.3 bits (227), Expect = 3e-22
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+++ V EG++A FSC G+P V W R + L S+R
Sbjct: 15 ARILTKPRSM-TVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 71
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
++S V+A DEG Y N+ G+ ++ I+
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 86.6 bits (215), Expect = 1e-20
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
+ + EG+SA + C G+P W G L +R V
Sbjct: 14 AARILTKPRSMT-VYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
T +I+ +D G Y N G+ + +L ++
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 71.2 bits (175), Expect = 4e-15
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+TKP+S+ + E A F C P V W + G+ ++ R +
Sbjct: 18 LTKPRSMT-VYEGESARFSCDTDGEPVP------TVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+I D G Y+ N G E + TL
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 92.4 bits (230), Expect = 9e-23
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKSGSRFT-ETN 236
P F +N I EG+ + ++ P V W+ N ++S +
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAP------DVSWYLNGRTVQSDDLHKMIVS 57
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKK 279
G +L D+G Y C A N G+A + L V +K+
Sbjct: 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 92.0 bits (229), Expect = 1e-22
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS-TMHDFGY 372
P F Q ++ + E + + ++ G V+W NG +Q+ + + + G
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+L F+ D+G Y C A N GEA + L V +K
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 90.1 bits (224), Expect = 7e-22
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH-VQHDFGYV 694
P F Q+ I EG+ D +V G P W++NG ++ + + G
Sbjct: 6 PRFIQVPENM-SIDEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+L +D+G Y C A NRAGEA + L V +K
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 89.3 bits (222), Expect = 1e-21
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKHDFGYV 562
P F + +N+ ++EG+ ++ G P V W+ N + ++ + G
Sbjct: 6 PRFIQVPENMS-IDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
++ VRA D G Y C A N GEA T + + K
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 71.2 bits (175), Expect = 2e-15
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGY 107
+ P+++ + E + K+ P V W+ NGR V + + + G
Sbjct: 9 IQVPENMS-IDEGRFCRMDFKVSGLPAP------DVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+L D+G Y C A N G A L
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 90.5 bits (225), Expect = 6e-22
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKSGSRFT- 233
++ P F + + ++EG+ +C++ P + W + P++ S
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP------DLSWQLDGKPVRPDSAHKM 58
Query: 234 ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
G +L I D+G+YTC A N GQ S L+V +K+S
Sbjct: 59 LVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 90.1 bits (224), Expect = 9e-22
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH- 368
+ P F Q D+ V E + + ++ G ++W +G P++ + +
Sbjct: 4 GSSGFRPHFLQAPGDLTVQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDSAHKMLVR 61
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ G +L + D+G YTC A N G+ S L V +K
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 89.3 bits (222), Expect = 2e-21
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKH 557
++ RP F + ++ V+EGK C++ G PT + W + KP+ S
Sbjct: 5 SSGFRPHFLQAPGDLT-VQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDSAHKMLVR 61
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ G ++ + V + D GIY C ATN G+ + + + K
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 88.2 bits (219), Expect = 4e-21
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 629 PERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ 688
+P F Q + EG+ DC+V G PT W ++G ++ S +
Sbjct: 3 SGSSGFRPHFLQAPGDL-TVQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKML 59
Query: 689 H-DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ G +L I D+G+Y C A NRAG+ S L V +K
Sbjct: 60 VRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 70.1 bits (172), Expect = 9e-15
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIH-DFGY 107
+ P + ++E +CK+ P + W +G+PV + + + G
Sbjct: 13 LQAPGDLT-VQEGKLCRMDCKVSGLPTP------DLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+L I D+G YTC A N G L
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 89.7 bits (223), Expect = 9e-22
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 4/99 (4%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN--RVSTMHDF 370
P DI + E + G+ +VTW G I + R +
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAF--TGEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
L +D G YT NE G + + + S
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 88.1 bits (219), Expect = 3e-21
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS--RFHVQHDFGY 693
P L + I EG+ C G+PT W G ++ RFH+++
Sbjct: 6 PKIEALPS-DISIDEGKVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
TL I D G+Y N G ++ ++ ++S
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 87.0 bits (216), Expect = 7e-21
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE--DSSRITTKHDFGY 561
P +I ++EGK +C G+PT +V W + + + R ++
Sbjct: 6 PKIEALPSDIS-IDEGKVLTVACAF--TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598
+ + V+ +D G+Y N G T ++ I++
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 85.8 bits (213), Expect = 2e-20
Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGS--RFTETNNF 238
P + I EG+ C + T +V W I S RF N
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACA---FTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
L IM +D G+YT N G + N+ + S
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 66.6 bits (163), Expect = 1e-13
Identities = 20/94 (21%), Positives = 27/94 (28%), Gaps = 13/94 (13%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPV--TIGHRFRPIHDFG 106
P I + E C P +V W GR + RF +
Sbjct: 9 EALPSDIS-IDEGKVLTVACAFTGEPTP------EVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
L I+D +D G YT N G +
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 89.7 bits (223), Expect = 1e-21
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ S P Q D V ++ ++ G + TW++ IQ S + +
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENS 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L E G YT N+LG L V K
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 88.9 bits (221), Expect = 3e-21
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETN 236
+ + P ++ +++ G+ V+ + W I+ N
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFG---KVTGTQPITCTWMKFRKQIQESEHMKVEN 58
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+ L I+ E G YT N LG NL V K
Sbjct: 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 87.4 bits (217), Expect = 9e-21
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P Q ++ G+S +V G + W +++ V++
Sbjct: 6 SGPQIIQFPE-DQKVRAGESVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENG 62
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I G Y N+ G + +L V K
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 86.2 bits (214), Expect = 2e-20
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 498 NATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH 557
++ P + ++ V G++ ++ G + W + K +++S + ++
Sbjct: 2 SSGSSGPQIIQFPEDQK-VRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVEN 58
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + R E G Y N LG ++ + K
Sbjct: 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 63.5 bits (155), Expect = 2e-12
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 53 VTKPKSIENLRERGHAHFECKL--EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ P+ + +R K+ + W K + + + + L
Sbjct: 11 IQFPEDQK-VRAGESVELFGKVTGTQP----ITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
I+ E G YT N +G + Q L
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 89.0 bits (221), Expect = 2e-21
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 311 TVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ S V T+ ++ + V E ++ FE + + W G + +S+R
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECV-LSHESASDPAMWTVGGKTVGSSSRFQATRQ 61
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L + P D+G + ++L V ++
Sbjct: 62 GRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSG 100
Score = 88.2 bits (219), Expect = 3e-21
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 179 TTTQAPI-FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
+ + + T LK E+ EG+ FEC + + W + S SRF T
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECV-LSHESASDPAMWTVGGKTVGSSSRFQATRQ 61
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
L + + P D+G + +L+V + +
Sbjct: 62 GRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSGPSS 103
Score = 87.8 bits (218), Expect = 5e-21
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
T+ L E++EG+S ++C + + W V G + SRF
Sbjct: 9 VGITKRLKTM-EVLEGESCSFECVLSH-ESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
L + + P+D+G + S SL V+ +S S
Sbjct: 67 LVVREAAPSDAGEVVFS----VRGLTSKASLIVRERSGPSS 103
Score = 87.1 bits (216), Expect = 7e-21
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
TK L+ ++ V EG++ F C + + W K + SSR
Sbjct: 9 VGITKRLKTME-VLEGESCSFECV-LSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ + D G + + AS+ ++ ++G
Sbjct: 67 LVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSG 100
Score = 70.1 bits (172), Expect = 7e-15
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ K++E + E FEC L ++ W G+ V RF+ L +
Sbjct: 12 TKRLKTME-VLEGESCSFECVLSH-ESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVV 69
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
+ P D+G L A +
Sbjct: 70 REAAPSDAGEVVFSVRGLTSKASL 93
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 91.2 bits (226), Expect = 3e-21
Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 57/223 (25%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
+ G +C L W + L++ + K + + G
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-------TEFKVDSDDQWG 62
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C E + TA++++ +
Sbjct: 63 EYSCVFLP---EPMGTANIQL------------------------------------HGP 83
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNG------VELKMGSRFHVQ 688
P + + + I EG++A C+ P + W+ + SRF V
Sbjct: 84 PRVKAVKS-SEHINEGETAMLVCKSE--SVPPVTDWAWYKITDSEDKALMNGSESRFFVS 140
Query: 689 HDFGYVTLDITKCVPA-DSGVYMCKAINRAGEAVSSTSLKVKS 730
G L I D G Y C + G + +L+V+S
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
Score = 80.8 bits (199), Expect = 1e-17
Identities = 30/235 (12%), Positives = 52/235 (22%), Gaps = 64/235 (27%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+FTT G + C L + W V +K + +
Sbjct: 4 TVFTTV-----EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-------T 51
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
+ + G Y+C +
Sbjct: 52 EFKVDSDDQWGEYSCVFLPEPMGTANI--------------------------------- 78
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF--EARLIPVGDSKLKVTWLRNGVPIQ-- 359
+ P H+ E + A ++ +P W +
Sbjct: 79 -------QLHGPPRVKAVKSSEHINEGETAMLVCKSESVP---PVTDWAWYKITDSEDKA 128
Query: 360 ----ASNRVSTMHDFGYVALNFKY-TYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ +R G L+ + D G Y C + G TL V S
Sbjct: 129 LMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
Score = 77.4 bits (190), Expect = 2e-16
Identities = 34/219 (15%), Positives = 51/219 (23%), Gaps = 60/219 (27%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C L W K G + + + G Y+C
Sbjct: 16 ILLTCSLNDSATEVTGHRWLKGGVVLKEDA-------LPGQKTEFKVDSDDQWGEYSCVF 68
Query: 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187
+ A +Q G P
Sbjct: 69 LPEPM---GTANIQLHG--------------------------------------PPRVK 87
Query: 188 TSLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHNN----VPIKSGS--RFTETNNFG 239
+ I EG+ A C+ W+ + +GS RF +++ G
Sbjct: 88 AVKSSEHINEGETAMLVCK---SESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 144
Query: 240 FVALDIMQCLPE-DSGVYTCRAVNALGQAVTSGNLLVHS 277
L I E D G Y C ++ G L V S
Sbjct: 145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
Score = 55.0 bits (132), Expect = 9e-09
Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 10/94 (10%)
Query: 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPA 704
T+ G C + W GV LK + +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-------LPGQKTEFKVDSDD 59
Query: 705 DSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
G Y C + E + + ++++ + +
Sbjct: 60 QWGEYSCVFLP---EPMGTANIQLHGPPRVKAVK 90
Score = 51.6 bits (123), Expect = 1e-07
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-TLKVEWFRNEKPLE------DSSRITTK 556
P + + EG+ A C+ P W++ + SR
Sbjct: 84 PRVKAVKSSEH-INEGETAMLVCKS--ESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 140
Query: 557 HDFGYVAMDLSHVRAE-DEGIYICKATNALGEAVTTASMKIKT 598
G + + ++ E D G Y C T++ G ++++++
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
Score = 49.3 bits (117), Expect = 8e-07
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 15/107 (14%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
VFT L WL+ GV ++
Sbjct: 4 TVFTTV-----EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-------T 51
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAA 422
FK + G Y+C + E + ++ + + ++ +E
Sbjct: 52 EFKVDSDDQWGEYSCVFLP---EPMGTANIQLHGPPRVKAVKSSEHI 95
Score = 45.4 bits (107), Expect = 2e-05
Identities = 26/100 (26%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE---PVTDSNLKVEWFKNGRPVTIG------HRFRPI 102
V KS E++ E A CK E PVT W+K RF
Sbjct: 85 RVKAVKSSEHINEGETAMLVCKSESVPPVT----DWAWYKITDSEDKALMNGSESRFFVS 140
Query: 103 HDFGYVALDIID-TIPEDSGTYTCRAVNLVGFAEVQATLQ 141
G L I + + D G Y C + G + TL+
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 94.9 bits (235), Expect = 3e-21
Identities = 45/358 (12%), Positives = 88/358 (24%), Gaps = 90/358 (25%)
Query: 75 EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV-----ALDIIDTIPEDSGTYTCRAVN 129
+ L + W+ + + + L T+ D+G YTC N
Sbjct: 41 STAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRN 100
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
++V L+ + + +
Sbjct: 101 TTYCSKVAFPLE----------------------------------VVQKDSCFNSPMKL 126
Query: 190 LKNCEIKEGQRAHFECRLI---PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIM 246
+ E C + S + W+ I++ + L +
Sbjct: 127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMN----LSFL 182
Query: 247 QCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTS 306
L ++G YTC E L+R ++
Sbjct: 183 IALISNNGNYTCVVTY--------------------PENGRTFHLTRTLTVK-------- 214
Query: 307 IIEDTVSQAPVFTQPMRDIHVAENQAAHF-----EARLIPVGDSKLKVTWLRNGVPIQAS 361
++ + P D V E + + DS+ +V W +G
Sbjct: 215 VVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDI 274
Query: 362 NR----------VSTMHDFGYVALNFKYTYPED-SGTYTCRAVNELGEAVTSSTLFVE 408
T + L+ K ED +Y C A + GE ++ + +
Sbjct: 275 TIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332
Score = 88.0 bits (217), Expect = 6e-19
Identities = 59/322 (18%), Positives = 90/322 (27%), Gaps = 45/322 (13%)
Query: 320 QPMRDIHVAENQAAHFEARLI---------PVGDSKLKVTWLRNG------VPIQASNRV 364
MR I V E++ A + L + L + W PI
Sbjct: 12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71
Query: 365 STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQ 424
+ + V L F+ T D+G YTC N + + L V K S +
Sbjct: 72 NRISKEKDV-LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130
Query: 425 KIQNLEDTSRFKRKEEEEVEVTQQPSFT------VQLNGPTELVEGEGTIITDTQ----- 473
+ + +P+ T N + EG
Sbjct: 131 LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNG 190
Query: 474 ----HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDA-VEEGKNAHFSCR- 527
E R T V PV P ++ E G+ C
Sbjct: 191 NYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV 250
Query: 528 -LIPVGDPTLKVEWFRNEKPLEDS--------SRITTKHDFGYVAMDL--SHVRAEDEGI 576
+ D +V W + K +D S ++ + L V +ED
Sbjct: 251 YFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKR 310
Query: 577 -YICKATNALGEAVTTASMKIK 597
Y+C A +A GE A +K K
Sbjct: 311 SYVCHARSAKGEVAKAAKVKQK 332
Score = 85.3 bits (210), Expect = 5e-18
Identities = 26/230 (11%), Positives = 56/230 (24%), Gaps = 45/230 (19%)
Query: 516 VEEGKNAHFSCRLI---PVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
E +C + + W+ +++ + + + +
Sbjct: 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMN----LSFLIALIS 187
Query: 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
+ G Y C T + + ++ + P +
Sbjct: 188 NNGNYTCVVTYPENGRTFHLTRTL------TVKVVGSPKNAVPPVIHSPNDHV------- 234
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVV--PVGDPTMRFEWFVNGVELKMGSRFHVQH- 689
E G+ C V + D W ++G + + +
Sbjct: 235 ------------VYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE 282
Query: 690 ---------DFGYVTLDITKCVPADSGV-YMCKAINRAGEAVSSTSLKVK 729
+ L I K D Y+C A + GE + +K K
Sbjct: 283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332
Score = 69.1 bits (168), Expect = 1e-12
Identities = 26/241 (10%), Positives = 57/241 (23%), Gaps = 58/241 (24%)
Query: 516 VEEGKNAHFSCRLI---------PVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD- 565
V E + A C L L + W+ + + I + ++ +
Sbjct: 19 VFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK 78
Query: 566 ----LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
D G Y C N + +++ K
Sbjct: 79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKD-------------------SC 119
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV---PVGDPTMRFEWFVNGVE 678
+ + P + +E C V W++ +
Sbjct: 120 FNSPMKLPVHK--------------LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYK 165
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI----NRAGEAVSSTSLKVKSKSDI 734
++ + + L + +++G Y C R + ++KV
Sbjct: 166 IQNFNNVIPEGM----NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN 221
Query: 735 V 735
Sbjct: 222 A 222
Score = 68.0 bits (165), Expect = 3e-12
Identities = 34/280 (12%), Positives = 61/280 (21%), Gaps = 59/280 (21%)
Query: 189 SLKNCEIKEGQRAHFECRLI---------PVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+++ ++ E + A +C L + + W+
Sbjct: 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72
Query: 240 FV-----ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
+ L L D+G YTC N + + L V K S
Sbjct: 73 RISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLY 132
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
+ R ++ + T +TW
Sbjct: 133 IEYGIQRI-TCPNVDGYFPSSVKPT-----------------------------ITWYMG 162
Query: 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQ 414
IQ N V L+F ++G YTC T +L
Sbjct: 163 CYKIQNFNNVIPEGMN----LSFLIALISNNGNYTCVVTYPENGRTFHLT------RTLT 212
Query: 415 LDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQ 454
+ + + E +
Sbjct: 213 VKVVGSPKNAVPPVI-----HSPNDHVVYEKEPGEELLIP 247
Score = 46.8 bits (110), Expect = 2e-05
Identities = 13/108 (12%), Positives = 31/108 (28%), Gaps = 14/108 (12%)
Query: 648 IMEGQSAHYDCRVV---------PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV---- 694
+ E + A C + + W+ + + + + +
Sbjct: 19 VFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK 78
Query: 695 -TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
L + D+G Y C N + + L+V K + ++
Sbjct: 79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL 126
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 87.8 bits (218), Expect = 5e-21
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
AP T + + + ++ G+ ++ W ++ + + +
Sbjct: 6 LERVAPTITGNLENQTTSIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDSGIVLKD-- 61
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
G L + ED G YTC+A + LG A + +E
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 85.9 bits (213), Expect = 2e-20
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
AP T +L+N G+ C P ++ WF +N + S +
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPP------QIMWFKDNETLVEDSGIVLKDGN 63
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
L I + ED G+YTC+A + LG A ++
Sbjct: 64 R--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 85.9 bits (213), Expect = 3e-20
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P T L+N G++ SC G+P ++ WF++ + L + S I K G
Sbjct: 11 PTITGNLENQ-TTSIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDSGIVLKD--GNRN 65
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + VR EDEG+Y C+A + LG A A I+
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
Score = 81.2 bits (201), Expect = 1e-18
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P T L G+S C G+P + WF + L S ++ G
Sbjct: 9 VAPTITGNLE-NQTTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKD--GN 63
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
L I + D G+Y C+A + G A ++ + +
Sbjct: 64 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
Score = 63.1 bits (154), Expect = 2e-12
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
++ WFK+ + + G L I ED G YTC+A +++G A+V+A
Sbjct: 41 QIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
Query: 143 RGS 145
G+
Sbjct: 99 EGA 101
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 87.8 bits (218), Expect = 6e-21
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
++ FT LK E EG A +C L V+ VEW ++ G R++ +
Sbjct: 5 SSGPARFTQDLKTKEASEGATATLQCELSKVAP----VEWKKGPETLRDGGRYSLKQDGT 60
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L I D+G Y+C GQ TS L V
Sbjct: 61 RCELQIHDLSVADAGEYSCMC----GQERTSATLTVR 93
Score = 87.0 bits (216), Expect = 8e-21
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 19/121 (15%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
S FTQ ++ +E A + L V V W + ++ R S D
Sbjct: 6 SGPARFTQDLKTKEASEGATATLQCELSKVAP----VEWKKGPETLRDGGRYSLKQDGTR 61
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDT 432
L D+G Y+C G+ TS+TL V + + +
Sbjct: 62 CELQIHDLSVADAGEYSCMC----GQERTSATLTVR-----------ALPARFTEGSGPS 106
Query: 433 S 433
S
Sbjct: 107 S 107
Score = 80.9 bits (200), Expect = 1e-18
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
FTQ L E EG +A C + + W L+ G R+ ++ D
Sbjct: 9 ARFTQDLKTK-EASEGATATLQCELSK--VAPVE--WKKGPETLRDGGRYSLKQDGTRCE 63
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
L I AD+G Y C G+ +S +L V++ +E P
Sbjct: 64 LQIHDLSVADAGEYSC----MCGQERTSATLTVRALPARFTEGSGP 105
Score = 79.0 bits (195), Expect = 6e-18
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
FT+ L+ EG A C L VEW + + L D R + K D
Sbjct: 9 ARFTQDLKTK-EASEGATATLQCEL----SKVAPVEWKKGPETLRDGGRYSLKQDGTRCE 63
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPE 610
+ + + D G Y C G+ T+A++ ++ E P
Sbjct: 64 LQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPS 106
Score = 69.7 bits (171), Expect = 1e-14
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
K+ E E A +C+L V VEW K + G R+ D L I
Sbjct: 12 TQDLKTKE-ASEGATATLQCELSKVAP----VEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
D D+G Y+C A +
Sbjct: 67 HDLSVADAGEYSCMCGQERTSATL 90
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 87.8 bits (218), Expect = 7e-21
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT-ETNNFGF 240
+ L++ +++EG A F CR+ P N V WF + P+ + + G+
Sbjct: 12 RRVHIIEDLEDVDVQEGSSATFRCRISP--ANYEPVHWFLDKTPLHANELNEIDAQPGGY 69
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
L + Q +DSG A G S L V K S+ + +
Sbjct: 70 HVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGP 112
Score = 84.8 bits (210), Expect = 7e-20
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKHDF 559
+R + L+++D V+EG +A F CR+ V WF ++ PL +
Sbjct: 11 GRRVHIIEDLEDVD-VQEGSSATFRCRI--SPANYEPVHWFLDKTPLHANELNEIDAQPG 67
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEG 611
GY + L + +D G +A G+ +A++++ K + + G
Sbjct: 68 GYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPSSG 115
Score = 83.2 bits (206), Expect = 3e-19
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS-TMHDFGY 372
+ + + D+ V E +A F R+ + V W + P+ A+ GY
Sbjct: 12 RRVHIIEDLEDVDVQEGSSATFRCRI--SPANYEPVHWFLDKTPLHANELNEIDAQPGGY 69
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQ 418
L + +DSGT A G+ S+ L V K S+ +
Sbjct: 70 HVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSG 111
Score = 75.9 bits (187), Expect = 1e-16
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ-HD 690
Q + + L ++ EG SA + CR+ WF++ L +
Sbjct: 10 QGRRVHIIEDLEDV-DVQEGSSATFRCRIS--PANYEPVHWFLDKTPLHANELNEIDAQP 66
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
GY L + + DSG + AG+ +S +L+V K + S S
Sbjct: 67 GGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSVFSRS 110
Score = 61.6 bits (150), Expect = 9e-12
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKL--EPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGYVA 109
+ + ++ ++E A F C++ V WF + P+ GY
Sbjct: 17 IEDLEDVD-VQEGSSATFRCRISPANYEP----VHWFLDKTPLHANELNEIDAQPGGYHV 71
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETG 157
L + +DSGT A G A L+ + + + +G
Sbjct: 72 LTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPSSG 115
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 92.3 bits (229), Expect = 7e-21
Identities = 44/337 (13%), Positives = 76/337 (22%), Gaps = 107/337 (31%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
C++ + + +WF NG + I DSG Y C+
Sbjct: 21 LHCEVLHLP-GSSSTQWFLNGTATQTSTP----------SYRITSASVNDSGEYRCQRGL 69
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
S +++ +I
Sbjct: 70 ---------------------SGRSDPIQLEIHR--------------------GWLLLQ 88
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
+ + EG+ C V ++ N K + L I++
Sbjct: 89 VSSRVFTEGEPLALRCH-AWKDKLVYNVLYYRNGKAFKFFHWNSN--------LTILKTN 139
Query: 250 PEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIE 309
+G Y C + ++ V
Sbjct: 140 ISHNGTYHCSGMGKHRYTSAGISVTVKELFP----------------------------- 170
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHF--EARLIPV-GDSKLKVTWLRNGVPIQASNRVST 366
APV + E E +L+ +L ++ ++ N S
Sbjct: 171 -----APVLNAS-VTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE 224
Query: 367 MHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
EDSG Y C A E G + S
Sbjct: 225 --------YQILTARREDSGLYWCEAATEDGNVLKRS 253
Score = 81.5 bits (201), Expect = 3e-17
Identities = 27/225 (12%), Positives = 59/225 (26%), Gaps = 60/225 (26%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ T + + + C ++ + ++ +WF N ++ + +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSS-STQWFLNGTATQTSTP----------SY 50
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
I DSG Y C+ +
Sbjct: 51 RITSASVNDSGEYRCQRGLS---------------------------------------G 71
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
R+ I+ + + + Q + E + V + RNG + +
Sbjct: 72 RSDPIQLEIHRGWLLLQVSSRV-FTEGEPLALRCH-AWKDKLVYNVLYYRNGKAFKFFHW 129
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
S L T +GTY C + + ++ V+
Sbjct: 130 NSN--------LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Score = 78.0 bits (192), Expect = 4e-16
Identities = 30/216 (13%), Positives = 54/216 (25%), Gaps = 56/216 (25%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
EG+ C V ++RN K + + + G
Sbjct: 94 FTEGEPLALRCH-AWKDKLVYNVLYYRNGKAFKFFHWNSNLT--------ILKTNISHNG 144
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C S+ + +E +
Sbjct: 145 TYHCSGMGKHRYTSAGISVTV------------------------------KEL---FPA 171
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVV---PVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
P+ + TS ++EG C + F +++ L+ +
Sbjct: 172 PVLN--ASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS------ 223
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
I DSG+Y C+A G V S ++
Sbjct: 224 --EYQILTARREDSGLYWCEAATEDG-NVLKRSPEL 256
Score = 77.6 bits (191), Expect = 7e-16
Identities = 30/227 (13%), Positives = 54/227 (23%), Gaps = 61/227 (26%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+ V T + +V + + C + + +WF N + S+
Sbjct: 1 KAVITLQPPWV-SVFQEETVTLHCE-VLHLPGSSSTQWFLNGTATQTSTPSYR------- 51
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
++ D G Y C+ + IQ
Sbjct: 52 ---ITSASVNDSGEYRCQRGLSGRSD-------------------------PIQLEIHRG 83
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
+ Q EG+ C ++ NG K
Sbjct: 84 WLLLQVSS---------------RVFTEGEPLALRCHAWK-DKLVYNVLYYRNGKAFKFF 127
Query: 683 SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L I K + +G Y C + + + S+ VK
Sbjct: 128 HWNS--------NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Score = 68.4 bits (167), Expect = 9e-13
Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 56/198 (28%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
V +++NG+ H + I+ T +GTY C + + ++
Sbjct: 114 NVLYYRNGKAFKFFHWNSNLT--------ILKTNISHNGTYHCSGMGKHRYTSAGISV-- 163
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
++ L AP+ S+ + + EG
Sbjct: 164 -----------------TVKELF----------------PAPVLNASVTS-PLLEGNLVT 189
Query: 203 FECR---LIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259
C L+ + ++ + ++ + +E I+ EDSG+Y C
Sbjct: 190 LSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--------YQILTARREDSGLYWCE 241
Query: 260 AVNALGQAVT-SGNLLVH 276
A G + S L +
Sbjct: 242 AATEDGNVLKRSPELELQ 259
Score = 46.4 bits (110), Expect = 1e-05
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCR---LIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
PV + + EG SC L+ L ++ K L + +
Sbjct: 170 PAPVLNASVT--SPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--- 224
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ R ED G+Y C+A G V S ++
Sbjct: 225 -----YQILTARREDSGLYWCEAATEDG-NVLKRSPEL 256
Score = 43.4 bits (102), Expect = 2e-04
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 16/97 (16%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPAD 705
+ + ++ C V+ + + +WF+NG + + + IT D
Sbjct: 11 VSVFQEETVTLHCEVLHLPGSS-STQWFLNGTATQTSTP----------SYRITSASVND 59
Query: 706 SGVYMCKAINRAGEA-----VSSTSLKVKSKSDIVSE 737
SG Y C+ + L ++ S + +E
Sbjct: 60 SGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTE 96
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 87.0 bits (216), Expect = 8e-21
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
++ L++ + G+ C +S V W + I+ ++
Sbjct: 3 SGSSGPAAIIKPLEDQWVAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVVCE 59
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQA 267
L I +D+G YTC + A
Sbjct: 60 GTMAMLVIRGASLKDAGEYTCEVEASKSTA 89
Score = 83.5 bits (207), Expect = 2e-19
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 311 TVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ S P +P+ D VA + + + V WL++ I+ S + + +
Sbjct: 3 SGSSGPAAIIKPLEDQWVAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVVCE 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L + +D+G YTC A +L VE KAS
Sbjct: 60 GTMAMLVIRGASLKDAGEYTCEVEASKSTA----SLHVEEKAS 98
Score = 77.7 bits (192), Expect = 1e-17
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
KPL++ V G++ C L T V W ++ K + S + +
Sbjct: 9 AAIIKPLEDQW-VAPGEDVELRCEL--SRAGT-PVHWLKDRKAIRKSQKYDVVCEGTMAM 64
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTT 591
+ + +D G Y C+ + A
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKSTASLH 92
Score = 73.5 bits (181), Expect = 5e-16
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
+ L + G+ C + G P W + ++ ++ V +
Sbjct: 9 AAIIKPLEDQ-WVAPGEDVELRCELSRAGTP---VHWLKDRKAIRKSQKYDVVCEGTMAM 64
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
L I D+G Y C+ A SL V+ K+
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKSTA----SLHVEEKAS 98
Score = 70.0 bits (172), Expect = 8e-15
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ + + C+ ++ + V W K+ + + ++ + + L I
Sbjct: 12 IKPLEDQW-VAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
+D+G YTC A +
Sbjct: 68 RGASLKDAGEYTCEVEASKSTASL 91
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 86.7 bits (215), Expect = 1e-20
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 178 ETTTQAPI-FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN 236
+ + + + + +K ++A F+C VSD + +W+ N V ++ R T ++
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISH 58
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267
F L I PED G YT
Sbjct: 59 VGRFHKLVIDDVRPEDEGDYTFVPDGYALSL 89
Score = 82.4 bits (204), Expect = 4e-19
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559
+ + + + ++ V+ + A F C V D + +W++N + S RIT H
Sbjct: 5 SSGQLEVLQDIADLT-VKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVG 60
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEA 588
+ + + VR EDEG Y
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDGYALSL 89
Score = 81.7 bits (202), Expect = 7e-19
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 309 EDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
S Q + D+ V + A F+ V D K+ W +NGV ++ S R++ H
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISH 58
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ L PED G YT S+ L
Sbjct: 59 VGRFHKLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLE 97
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
+ Q + + + A + C V D + +W+ NGVE++ R + H +
Sbjct: 8 QLEVLQDIADL-TVKAAEQAVFKCEV---SDEKVTGKWYKNGVEVRPSKRITISHVGRFH 63
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
L I P D G Y A S L
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLE 97
Score = 67.8 bits (166), Expect = 5e-14
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 55 KPKSIENLR-----ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA 109
+ + ++++ A F+C+ V+D + +W+KNG V R H +
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGRFHK 64
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I D PED G YT +
Sbjct: 65 LVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 85.8 bits (213), Expect = 2e-20
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
P T+ + +IK G + E I P W +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAP----DPTATWTVGDSGAALAPELLVDAKSST 57
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
++ DSG Y + N LG+ ++V
Sbjct: 58 TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 83.5 bits (207), Expect = 1e-19
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
KP +I G + + + + G P W V + V
Sbjct: 2 KPKILTASR-KIKIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
++ ADSG Y K N GE + + V+
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 83.1 bits (206), Expect = 2e-19
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P + I ++ G + I G P W + + +
Sbjct: 2 KPKILTASRKI-KIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
++ + D G Y K N LGE + ++
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 82.4 bits (204), Expect = 3e-19
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
P R I + + E I G TW + + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ F DSG Y + NELGE + V+
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 62.0 bits (151), Expect = 4e-12
Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 11/93 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+T + I+ ++ + E P W +
Sbjct: 6 LTASRKIK-IKAGFTHNLEVDFIGAPDP------TATWTVGDSGAALAPELLVDAKSSTT 58
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
++ DSG Y + N +G E +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 85.0 bits (211), Expect = 3e-20
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 313 SQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
+ A + +P+ + V + AHFE + + + W G P+ AS + D
Sbjct: 2 AMALIEVEKPLYGVEVFVGETAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGK 58
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L +G + +A +++ L V+
Sbjct: 59 KHILILHNCQLGMTGEVSFQA----ANTKSAANLKVK 91
Score = 84.7 bits (210), Expect = 4e-20
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 181 TQAPI-FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
A I L E+ G+ AHFE +S+ + +W P+ + +
Sbjct: 2 AMALIEVEKPLYGVEVFVGETAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGK 58
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + C +G + +A ++ NL V
Sbjct: 59 KHILILHNCQLGMTGEVSFQA----ANTKSAANLKV 90
Score = 83.1 bits (206), Expect = 1e-19
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 502 QRPV-FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ KPL ++ V G+ AHF + +P + +W +PL S D
Sbjct: 3 MALIEVEKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGK 58
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEA 588
+ L + + G +A N A
Sbjct: 59 KHILILHNCQLGMTGEVSFQAANTKSAA 86
Score = 75.0 bits (185), Expect = 1e-16
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
+ L G E+ G++AH++ + +P + +W + G L + D
Sbjct: 5 LIEVEKPLYGV-EVFVGETAHFEIEL---SEPDVHGQWKLKGQPLAASPDCEIIEDGKKH 60
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L + C +G + A S+ +LKVK
Sbjct: 61 ILILHNCQLGMTGEVSFQ----AANTKSAANLKVK 91
Score = 70.4 bits (173), Expect = 4e-15
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+E + AHFE + +++ ++ +W G+P+ I D L +
Sbjct: 9 EKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 113 IDTIPEDSGTYTCRAVNLVGFAE--VQA 138
+ +G + +A N A V+
Sbjct: 65 HNCQLGMTGEVSFQAANTKSAANLKVKE 92
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 85.1 bits (211), Expect = 3e-20
Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
F K L V++G F + DP L+V+W++N + + S++ +H
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ +++ + D+ Y A G+ + + ++
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELFVR 94
Score = 84.4 bits (209), Expect = 7e-20
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
F ++L ++ +G + + DP + +W+ NG E++ +++ +H
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL---ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQ 62
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I C D Y AG+ ST L V+S
Sbjct: 63 RILFINNCQMTDDSEYYV----TAGDEKCSTELFVRSG 96
Score = 82.8 bits (205), Expect = 2e-19
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 181 TQAPIFTTSLKNC-EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+ F L ++ +G R F ++D ++V+W+ N I+ +++ +
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
L I C D Y A G S L V S S
Sbjct: 62 QRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPS 98
Score = 82.4 bits (204), Expect = 3e-19
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 313 SQAPVFTQPMRDIH-VAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
S F + + + V + F + D KL+V W +NG I+ S + H
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L D Y A G+ S+ LFV S
Sbjct: 62 QRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSG 96
Score = 66.6 bits (163), Expect = 1e-13
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ + G F + + D L+V+W+KNG+ + ++ H L I
Sbjct: 11 AKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFI 67
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
+ D Y A + E+
Sbjct: 68 NNCQMTDDSEYYVTAGDEKCSTEL 91
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 94.3 bits (233), Expect = 4e-20
Identities = 82/634 (12%), Positives = 139/634 (21%), Gaps = 151/634 (23%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFH--------------NNVPI 226
++PIF + EG C P S N + W V
Sbjct: 1 KSPIF--GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSS 58
Query: 227 KSGSRFTETNN--FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
K R TN G ++I Q +DSG Y C
Sbjct: 59 KYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFD-------------- 104
Query: 285 TQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGD 344
+ VSQ P + V +
Sbjct: 105 -----------------------VSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENA 141
Query: 345 SKLKVTWLRNGVPI------------QASNRVSTMHDFGYVALNFKYTY----PEDSGTY 388
K K + + G+ + R+ + G L F D+G Y
Sbjct: 142 QKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR-LDIQGTGQLLFSVVINQLRLSDAGQY 200
Query: 389 TCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQ 448
C+A ++ ++ L V + ++ L K +
Sbjct: 201 LCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGEN 260
Query: 449 PSFTVQLNGPTELVEGEGTIITDTQHPKGLE-KIRKL--ED--------TEPHKRPEVDD 497
V G ++ I L ED + E
Sbjct: 261 CDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSP 320
Query: 498 NATKQRPVFTKPLQNID----AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR- 552
Q V + G + C ++K W E
Sbjct: 321 IQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY-WCLWEGAQNGRCPL 379
Query: 553 -----------------ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595
+ + G + L+ + + D G Y C T
Sbjct: 380 LVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKI 439
Query: 596 IKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAH 655
I+ + L++ +T H
Sbjct: 440 IEGEPNLKVPGN----------------------------------VTAVLGETLKVPCH 465
Query: 656 YDCRVVPVGDPTMRFEWFVNGVEL------KMGSRFHVQHD-FGYVTLDITKCVPADSGV 708
+ C+ + W G + F + V+L + AD G
Sbjct: 466 FPCKFSSYEKYWCK--WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523
Query: 709 YMCKA-INRAGEAVSSTSLKVKSKSDIVSESLQP 741
Y C ++ + V+ + S +
Sbjct: 524 YWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSL 557
Score = 87.0 bits (214), Expect = 7e-18
Identities = 74/596 (12%), Positives = 129/596 (21%), Gaps = 116/596 (19%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSN-LKVEWFKNGRPVTI--------------GH 97
+ P+ + E C P + + + W + G
Sbjct: 4 IFGPEEVN-SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAG 62
Query: 98 RF--RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNE 155
R + G ++I +DSG Y C +L+ G+L T+
Sbjct: 63 RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKV- 121
Query: 156 TGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM 215
+ T NC K + + +
Sbjct: 122 -------------------------YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156
Query: 216 KVEWFHNNVPIKSGSRFT----ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271
V V R T F + I Q D+G Y C+A + +
Sbjct: 157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFS-VVINQLRLSDAGQYLCQAGDDSNSNKKNA 215
Query: 272 NLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQ 331
+L V + S++ + S
Sbjct: 216 DLQVLKPEPELVYEDLRGSVT-FHCALGPEVANVAKFLCRQS------------------ 256
Query: 332 AAHFEARLIPVGDSKLKVTWLRNGVPIQASN-RVSTMHD--FGYVALNFKYTYPEDSGTY 388
V G A R+ G ++ ED+G Y
Sbjct: 257 -----------SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305
Query: 389 TCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTS---RFKRKEEEEV-- 443
C A ++ S + + + + K + + RKE + +
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY 365
Query: 444 ------EVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLED----------- 486
+ V G + + + P L
Sbjct: 366 WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE--EPGNGTFTVILNQLTSRDAGFYWC 423
Query: 487 -TEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK--VEWFRN 543
T + G+ C K +W
Sbjct: 424 LTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNT 483
Query: 544 EKPLEDSSR-------ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
S + + V++ L+ V DEG Y C T A
Sbjct: 484 GCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAA 539
Score = 61.9 bits (149), Expect = 5e-10
Identities = 43/364 (11%), Positives = 75/364 (20%), Gaps = 76/364 (20%)
Query: 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG---HRFRPIHDFGYVALDIIDTIPED 119
A F C+ N V G+ P G ++ I ED
Sbjct: 244 EVANVAKFLCRQSS--GENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED 301
Query: 120 SGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEET 179
+G Y C A + E + ++
Sbjct: 302 AGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR---------------------SPTV 340
Query: 180 TTQAPIFTTSLKNCEIKEGQRAH--FECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETN 236
+ ++ C + + C + + V + R +
Sbjct: 341 VKGVAGSSVAVL-CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE 399
Query: 237 N--FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
G + + Q D+G Y C +
Sbjct: 400 EPGNGTFTVILNQLTSRDAGFYWCLT-----------------------NGDTLWRTTVE 436
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
++ +G T P K W
Sbjct: 437 IKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFS-------------SYEKYWCKWNNT 483
Query: 355 GVPIQAS-----NRVSTMHDFG--YVALNFKYTYPEDSGTYTCRAVNELGEAVTSST-LF 406
G S ++ D V+L D G Y C T++ +
Sbjct: 484 GCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVA 543
Query: 407 VESK 410
VE +
Sbjct: 544 VEER 547
Score = 44.2 bits (103), Expect = 1e-04
Identities = 34/257 (13%), Positives = 64/257 (24%), Gaps = 43/257 (16%)
Query: 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGT 122
G + C + DS V+ GR +++ G + + D+G
Sbjct: 368 LWEGAQNGRCP--LLVDSEGWVKAQYEGR-LSL----LEEPGNGTFTVILNQLTSRDAGF 420
Query: 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
Y C + G +
Sbjct: 421 YWCLTNGDTLWRTTVEIKIIEGEPNL---------------------------KVPGNVT 453
Query: 183 APIFTTSLKNCEIKEGQRAH--FECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
A + T C ++ + C+ ++ + + P S + N
Sbjct: 454 AVLGETLKVPCHFPCKFSSYEKYWCK---WNNTGCQALPSQDEGP--SKAFVNCDENSRL 508
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVT-SGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
V+L + D G Y C T + + V +K+ + E+
Sbjct: 509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAA-PDEK 567
Query: 300 GRYQRTSIIEDTVSQAP 316
IE+ Q P
Sbjct: 568 VLDSGFREIENKAIQDP 584
Score = 37.7 bits (86), Expect = 0.014
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 642 LTGTSEI--MEGQSAHYDCRVVPV-GDPTMRFEWFVNG--------------VELKMGSR 684
+ G E+ +EG S C P + R W G V K R
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 685 FHVQ--HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPD 742
++ + G ++I + DSG Y C + SL+V +++++
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123
Query: 743 AW 744
Sbjct: 124 VD 125
Score = 36.9 bits (84), Expect = 0.027
Identities = 15/93 (16%), Positives = 19/93 (20%), Gaps = 9/93 (9%)
Query: 56 PKSIENLRERGHAHFECKLEPVTDSNLK--VEWFKNGRPVTIGHRFRPIHDF-------G 106
C S K +W G P F
Sbjct: 448 VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSR 507
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQAT 139
V+L + D G Y C + E A
Sbjct: 508 LVSLTLNLVTRADEGWYWCGVKQGHFYGETAAV 540
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 84.7 bits (210), Expect = 4e-20
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN 236
E F+ ++ E+ G A FE +KV W I + +++
Sbjct: 2 EPGKKPVSAFSKKPRSVEVAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLAT 58
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + + P D G Y A G + +L V
Sbjct: 59 EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
Score = 82.0 bits (203), Expect = 4e-19
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 309 EDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
E F++ R + VA A FEA + +KV W R G I ASN+
Sbjct: 2 EPGKKPVSAFSKKPRSVEVAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLAT 58
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ L + P D G+Y A G + L V
Sbjct: 59 EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
Score = 80.5 bits (199), Expect = 1e-18
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 488 EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL 547
EP K+P F+K +++ V G A F +KV W R +
Sbjct: 2 EPGKKP---------VSAFSKKPRSV-EVAAGSPAVFEAE---TERAGVKVRWQRGGSDI 48
Query: 548 EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
S++ + + + V D+G Y A G + +K+
Sbjct: 49 SASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
Score = 77.4 bits (191), Expect = 2e-17
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
F++ + E+ G A ++ ++ W G ++ +++ + +
Sbjct: 8 VSAFSKKPR-SVEVAAGSPAVFEAET---ERAGVKVRWQRGGSDISASNKYGLATEGTRH 63
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
TL + + PAD G Y AG + LKV
Sbjct: 64 TLTVREVGPADQGSYAV----IAGSSKVKFDLKVI 94
Score = 67.0 bits (164), Expect = 7e-14
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
KP+S+E + A FE + + +KV W + G ++ +++ + L +
Sbjct: 12 SKKPRSVE-VAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+ P D G+Y A G ++V+ L
Sbjct: 68 REVGPADQGSYAVIA----GSSKVKFDL 91
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 84.3 bits (209), Expect = 6e-20
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
S P+ D V + + + + W +NG+P+Q S+R+ +
Sbjct: 5 SSGLKILTPLTDQTVNLGKEICLKCEISE----NIPGKWTKNGLPVQESDRLKVVQKGRI 60
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L ED G Y + + + V S S
Sbjct: 61 HKLVIANALTEDEGDYVF--APDAYNVTLPAKVHVISGPS 98
Score = 82.8 bits (205), Expect = 2e-19
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
+ + T L + + G+ +C +S+N + +W N +P++ R
Sbjct: 3 SGSSGLKILTPLTDQTVNLGKEICLKCE---ISEN-IPGKWTKNGLPVQESDRLKVVQKG 58
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
L I L ED G Y + V S
Sbjct: 59 RIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVIS 95
Score = 77.8 bits (192), Expect = 1e-17
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
PL + V GK C + + +W +N P+++S R+
Sbjct: 8 LKILTPLTDQT-VNLGKEICLKCEI--SENIP--GKWTKNGLPVQESDRLKVVQKGRIHK 62
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ +++ EDEG Y+ A + +
Sbjct: 63 LVIANALTEDEGDYVFAPDA--YNVTLPAKVHVI 94
Score = 74.7 bits (184), Expect = 2e-16
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 7/95 (7%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
LT + G+ C + + + W NG+ ++ R V
Sbjct: 8 LKILTPLTDQ-TVNLGKEICLKCEIS--ENIPGK--WTKNGLPVQESDRLKVVQKGRIHK 62
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
L I + D G Y+ A + V S
Sbjct: 63 LVIANALTEDEGDYVF--APDAYNVTLPAKVHVIS 95
Score = 63.1 bits (154), Expect = 2e-12
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+T + +C++ N+ +W KNG PV R + + L I
Sbjct: 11 LTPLTDQT-VNLGKEICLKCEISE----NIPGKWTKNGLPVQESDRLKVVQKGRIHKLVI 65
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAG 147
+ + ED G Y + + S+G
Sbjct: 66 ANALTEDEGDYVFAPDAYNVTLPAKVHVISGPSSG 100
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 84.3 bits (209), Expect = 9e-20
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
FT L+N E EG A C +S VEW+ + ++ G R + +
Sbjct: 19 PIKFTEGLRNEEATEGATAVLRCE---LSKMA-PVEWWKGHETLRDGDRHSLRQDGARCE 74
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L I + ED+G Y C G+ TS L V +
Sbjct: 75 LQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106
Score = 82.4 bits (204), Expect = 5e-19
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 311 TVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
TV P+ FT+ +R+ E A L + V W + ++ +R S D
Sbjct: 14 TVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP----VEWWKGHETLRDGDRHSLRQD 69
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L + ED+G Y C G+ TS+ L V + S
Sbjct: 70 GARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPS 108
Score = 77.0 bits (190), Expect = 4e-17
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
FT+ L+N + EG A C L VEW++ + L D R + + D
Sbjct: 20 IKFTEGLRNEE-ATEGATAVLRCEL--SKMAP--VEWWKGHETLRDGDRHSLRQDGARCE 74
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + + AED G Y+C G+ T+A + ++
Sbjct: 75 LQIRGLVAEDAGEYLCMC----GKERTSAMLTVR 104
Score = 75.5 bits (186), Expect = 1e-16
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
FT+ L E EG +A C + + W+ L+ G R ++ D
Sbjct: 20 IKFTEGLRNE-EATEGATAVLRCELS--KMAPVE--WWKGHETLRDGDRHSLRQDGARCE 74
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I V D+G Y+C G+ +S L V++
Sbjct: 75 LQIRGLVAEDAGEYLC----MCGKERTSAMLTVRAM 106
Score = 65.1 bits (159), Expect = 6e-13
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
++ E E A C+L + VEW+K + G R D L I
Sbjct: 23 TEGLRNEE-ATEGATAVLRCELSKMAP----VEWWKGHETLRDGDRHSLRQDGARCELQI 77
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+ ED+G Y C G A L
Sbjct: 78 RGLVAEDAGEYLCMC----GKERTSAML 101
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 92.2 bits (228), Expect = 9e-20
Identities = 63/550 (11%), Positives = 118/550 (21%), Gaps = 123/550 (22%)
Query: 194 EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDS 253
+ G C D M + P+ NN L +Q +
Sbjct: 10 ILPRGGSVLVTCS--TSCDQPMLLGIET---PLPKKELLLPGNNRKVYELSNVQ----ED 60
Query: 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVS 313
C + GQ+ L TV
Sbjct: 61 SQPMCYSNCPDGQSTAKTFL-------------------------------------TVY 83
Query: 314 QAP-VFTQPMRDIHVAENQAAHFEARLIPVG-DSKLKVTWLRNGVPIQASNRVSTMHDFG 371
P + ++ + L V LR ++ R + +
Sbjct: 84 WTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK---REPAVGEPA 140
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNL-- 429
V ++CR +L + LQ Q +
Sbjct: 141 EVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVL 200
Query: 430 -EDTSRFKRKEEEEVEVTQQPSFTVQLNG----PTELVEGEGTIITDTQHPKGLEKIRKL 484
DT + + + + L PT + + ++ +
Sbjct: 201 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQR 260
Query: 485 ---EDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWF 541
++ E T + V EG C P + +
Sbjct: 261 LTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPR--AKVTLNGV 318
Query: 542 RNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ + + L ++ + C AT + + +
Sbjct: 319 PAQPLGPRAQ------------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR----- 361
Query: 602 LQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV 661
+L + P P E C+
Sbjct: 362 -ELRVLYG-----------PRLDERDCPGNW--------------TWPENSQQTPMCQAW 395
Query: 662 PVGDPTMRFEWFVNGV-ELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
G+P + +G L +G V G Y+C+A + GE
Sbjct: 396 --GNPLPELKCLKDGTFPLPIGESVTVT--------------RDLEGTYLCRARSTQGEV 439
Query: 721 VSSTSLKVKS 730
++ V S
Sbjct: 440 TREVTVNVLS 449
Score = 86.8 bits (214), Expect = 5e-18
Identities = 56/466 (12%), Positives = 110/466 (23%), Gaps = 76/466 (16%)
Query: 149 LTSTQNETGLEQIQYLEDKSKY---------QRGEYIEETTTQAP-IFTTSLKNCEIKEG 198
L N + ++ +++ S+ Q T P + G
Sbjct: 42 LLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVG 101
Query: 199 QRAHFECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
+ C++ + + V +K E V ++ ++
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE---VTTTVLVRRDHHGANFS 158
Query: 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV 317
CR L G L +P
Sbjct: 159 CRTELDLRP--------------------QGLELFENTSAPYQLQTFVLPATPPQLVSPR 198
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNF 377
+ V + F S+ +V + + T + + A
Sbjct: 199 VLEVDTQGTVVCSLDGLFPV-------SEAQVHLALGDQRLNPT---VTYGNDSFSAKAS 248
Query: 378 KYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKR 437
ED GT LG + + + +
Sbjct: 249 VSVTAEDEGTQRLTCAVILGN--------QSQETLQTVTIY---SFPAPNVILTKPEVSE 297
Query: 438 KEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDD 497
E V+ P V LNG G + P+ + T +
Sbjct: 298 GTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHK 357
Query: 498 NATKQ-----RPVFTKPLQNID-AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS 551
N T++ P + + E C+ G+P +++ ++
Sbjct: 358 NQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIG 415
Query: 552 RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
T V + EG Y+C+A + GE ++ +
Sbjct: 416 ESVT-------------VTRDLEGTYLCRARSTQGEVTREVTVNVL 448
Score = 75.3 bits (184), Expect = 2e-14
Identities = 42/334 (12%), Positives = 75/334 (22%), Gaps = 107/334 (32%)
Query: 80 SNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTY--TCRAVNLVGFAEVQ 137
S +V + + + + + A + ED GT TC + E
Sbjct: 219 SEAQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 275
Query: 138 ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197
T+ T P L E+ E
Sbjct: 276 QTV--------------------------------------TIYSFPAPNVILTKPEVSE 297
Query: 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
G +C P + + + L + ++ ++
Sbjct: 298 GTEVTVKCEAHPRA--KVTLNGVPAQPLGPRAQ------------LLLKATPEDNGRSFS 343
Query: 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV 317
C A + + N V P
Sbjct: 344 CSATLEVAGQLIHKNQTREL---------------------------------RVLYGPR 370
Query: 318 FTQPM--RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
+ + EN + G+ ++ L++G T+
Sbjct: 371 LDERDCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIGESVTVT------- 421
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ GTY CRA + GE T+ V S
Sbjct: 422 ------RDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 60.3 bits (145), Expect = 1e-09
Identities = 39/343 (11%), Positives = 80/343 (23%), Gaps = 90/343 (26%)
Query: 70 FECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128
C++E +NL V + + + R + + V ++ ++CR
Sbjct: 106 LRCQVEGGAPRANLTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162
Query: 129 NLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188
+ Q L + + P +
Sbjct: 163 LDLR--------------------------PQGLELFENTSAPYQLQTFVLPATPPQLVS 196
Query: 189 SLKNCEIKEGQRAHFECR---LIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
++ + C L PVS +V + + + + F A
Sbjct: 197 P---RVLEVDTQGTVVCSLDGLFPVS--EAQVHLALGDQRLNPTVTYGNDS---FSAKAS 248
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRT 305
+ ED G LG V
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTV------------------------------ 278
Query: 306 SIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS 365
T+ P + V+E + P +K+ + + +
Sbjct: 279 -----TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPR--AKVTLNGVPAQPLGPRAQ--- 328
Query: 366 TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L K T ++ +++C A E+ + E
Sbjct: 329 ---------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362
Score = 57.6 bits (138), Expect = 1e-08
Identities = 22/210 (10%), Positives = 45/210 (21%), Gaps = 65/210 (30%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
+C+ P + + L + T ++ +++C A
Sbjct: 303 VKCEAHPRAK--VTLNGVPAQPLGPRAQ------------LLLKATPEDNGRSFSCSATL 348
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
V + E P
Sbjct: 349 EVAGQLIHKNQT----------------------------------RELRVLYGPRLDER 374
Query: 190 L--KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQ 247
N E + C+ + +++ + G+ V
Sbjct: 375 DCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKD------GTFPLPIGESVTVT----- 421
Query: 248 CLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ G Y CRA + G+ + V S
Sbjct: 422 --RDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 34.1 bits (77), Expect = 0.17
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADS 706
+ G S C D M E + + + +++ +
Sbjct: 10 ILPRGGSVLVTCSTS--CDQPMLLGI-----ETPLPKKELLLPGNNRKVYELSN--VQED 60
Query: 707 GVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
MC + G++ + T L V + V + P
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLP 95
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 88.6 bits (219), Expect = 2e-19
Identities = 40/345 (11%), Positives = 73/345 (21%), Gaps = 91/345 (26%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C V W + + F V L + + D+G Y C
Sbjct: 18 FVLTCSGSA------PVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTGEYFCTH 70
Query: 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187
+ G + L ++ + IF
Sbjct: 71 NDSRGLETDERKR-----------------------LYIFVPDPTVGFLPNDAEELFIF- 106
Query: 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQ 247
+ E CR V+D + V + + GF
Sbjct: 107 -------LTEITEITIPCR---VTDPQLVVTLHEKKGDV--ALPVPYDHQRGFS------ 148
Query: 248 CLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSI 307
+ Y C+ + + + + S
Sbjct: 149 -GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSS-------------------------- 181
Query: 308 IEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG--VPIQASNRVS 365
+ V + + +I G+ + W
Sbjct: 182 --------INVSVNAVQTVVRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTD 231
Query: 366 TMHDFGYVA---LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ D Y L+ EDSGTYTC + + + +
Sbjct: 232 FLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 84.8 bits (209), Expect = 4e-18
Identities = 35/234 (14%), Positives = 57/234 (24%), Gaps = 53/234 (22%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ + + E CR V DP L V + + + F
Sbjct: 92 TVGFLPNDAEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGF- 147
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
++ YICK T E + A
Sbjct: 148 --------SGIFEDRSYICKTTIGDREVDSDAYYVY------------------------ 175
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
R I + + + +G++ C V+ G+ + FEW E
Sbjct: 176 ----------RLQVSSINVSVNAVQTVVRQGENITLMCIVI--GNEVVNFEWTYPRKESG 223
Query: 681 MG--SRFHVQHDFGYV---TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
D Y L I DSG Y C + ++ +
Sbjct: 224 RLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
Score = 77.4 bits (190), Expect = 1e-15
Identities = 40/266 (15%), Positives = 63/266 (23%), Gaps = 31/266 (11%)
Query: 348 KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSST--- 404
V W R + F V L D+G Y C + G
Sbjct: 27 PVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLY 85
Query: 405 LFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVT---QQPSFTVQL-----N 456
+FV L E + E E+ + P V L +
Sbjct: 86 IFVPDPTVGFLPNDAEELFIFL-----------TEITEITIPCRVTDPQLVVTLHEKKGD 134
Query: 457 GPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAV 516
+ + + + D E + V
Sbjct: 135 VALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQT-VV 193
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS-----HVRA 571
+G+N C +I G+ + EW K T S
Sbjct: 194 RQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL 251
Query: 572 EDEGIYICKATNALGEAVTTASMKIK 597
ED G Y C T ++ + ++ I
Sbjct: 252 EDSGTYTCNVTESVNDHQDEKAINIT 277
Score = 76.3 bits (187), Expect = 2e-15
Identities = 30/226 (13%), Positives = 55/226 (24%), Gaps = 49/226 (21%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
+ +C G V W R + F V L+++ D G
Sbjct: 12 LNVSSTFVLTCS----GSAP--VVWERMSQEPPQEMAKAQDGTFSSVLT-LTNLTGLDTG 64
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C ++ G L + + + P E +
Sbjct: 65 EYFCTHNDSRGLETDER-------KRLYI---------FVPDPTVGFLPNDAEELFIF-- 106
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
+ E CR V DP + ++ + + Q F
Sbjct: 107 ------------LTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGFSG-- 149
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
+ Y+CK E S + + ++ S+
Sbjct: 150 -------IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNA 188
Score = 70.9 bits (173), Expect = 2e-13
Identities = 33/236 (13%), Positives = 62/236 (26%), Gaps = 58/236 (24%)
Query: 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIID 114
+ L E C+ VTD L V + V + + F
Sbjct: 100 AEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGF--------- 147
Query: 115 TIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGE 174
+ + +Y C+ D+
Sbjct: 148 SGIFEDRSYICKTTI-----------------------------------GDREVDSDAY 172
Query: 175 YIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHN----NVPIKSG 229
Y+ + + + +++G+ C V N + EW + ++
Sbjct: 173 YVYRLQVSSINVSVNAVQTVVRQGENITLMCI---VIGNEVVNFEWTYPRKESGRLVEPV 229
Query: 230 SRFTETNNFGFVA-LDIMQCLPEDSGVYTCRAVNALG--QAVTSGNLLVHSKKSIQ 282
+ F + + L I EDSG YTC ++ Q + N+ V
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHH 285
Score = 63.6 bits (154), Expect = 4e-11
Identities = 25/213 (11%), Positives = 43/213 (20%), Gaps = 49/213 (23%)
Query: 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG 254
+ C + V W + + F V L + D+G
Sbjct: 12 LNVSSTFVLTCS------GSAPVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTG 64
Query: 255 VYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQ 314
Y C ++ G L + D
Sbjct: 65 EYFCTHNDSRGLETDERKRL------------------------------YIFVPDPTVG 94
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
I + E R V D +L VT + F
Sbjct: 95 FLPNDAEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGF---- 147
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ + +Y C+ E + +
Sbjct: 148 -----SGIFEDRSYICKTTIGDREVDSDAYYVY 175
Score = 48.2 bits (114), Expect = 5e-06
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGR--PVTIGHRFRPIHDFGYV 108
V+ +R+ + C + + + EW + + + D Y
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH 239
Query: 109 A---LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I EDSGTYTC V + + +
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 82.1 bits (203), Expect = 4e-19
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
+ +++ + G C + D+ + W + V + +R T
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTRITGEE---- 55
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
+++ +P DSG+Y C + G T ++ V
Sbjct: 56 VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 76.7 bits (189), Expect = 3e-17
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
+ + V + D + WLR+GV + SNR
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTR----ITGEE 55
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ + + P DSG Y C + G T ++ V
Sbjct: 56 VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 69.7 bits (171), Expect = 8e-15
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+++ V G C + D + W R+ L +S+R +
Sbjct: 4 GSSGVEVESF-LVHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTRITGEE---- 55
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+++ D G+Y C ++ G T S+ +
Sbjct: 56 VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
Score = 69.0 bits (169), Expect = 2e-14
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
+ G C + D W +GV+L +R + + +++ VPADSG
Sbjct: 15 VHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTRITGE----EVEVQDSVPADSG 67
Query: 708 VYMCKAINRAGEAVSSTSLKVKSK 731
+Y C + +G + S+ V
Sbjct: 68 LYACVTSSPSGSDTTYFSVNVSDA 91
Score = 68.6 bits (168), Expect = 2e-14
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C + D + W ++G + +R R + +++ D++P DSG Y C
Sbjct: 21 LQLRC---RLRDDVQSINWLRDGVQLAESNRTRITGEE----VEVQDSVPADSGLYACVT 73
Query: 128 VNLVGFAEVQATLQ 141
+ G ++
Sbjct: 74 SSPSGSDTTYFSVN 87
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 81.7 bits (202), Expect = 5e-19
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 310 DTVSQAPV----FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS 365
+ S V R++ +A V ++ +VTW ++G + +S++V
Sbjct: 2 SSGSSGKVVFAKEQPAHREVQAEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVR 58
Query: 366 TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L + ++G Y+C A G S L V +
Sbjct: 59 VEAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQCF 101
Score = 79.4 bits (196), Expect = 4e-18
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
G + + + + G A C V+ +V W+ + + S S+
Sbjct: 1 GSSGSSGKVVFAKEQPAHREVQAEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKV 57
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L + Q ++G Y+C A G S L V +
Sbjct: 58 RVEAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQ 99
Score = 74.4 bits (183), Expect = 2e-16
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 635 KPIFTQLLTGTS--EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
K +F + + G SA C V W+ +G +L S+ V+
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEV---AQAQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732
L + + A++G Y C AG S L+V +
Sbjct: 65 TRRLVVQQAGQAEAGEYSC----EAGGQQLSFRLQVAGQC 100
Score = 74.0 bits (182), Expect = 3e-16
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ + E G +A SC V +V W+++ K L SS++ +
Sbjct: 12 AKEQPAHREVQ-AEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRR 67
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600
+ + + G Y C+A G + +++ +
Sbjct: 68 LVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQC 100
Score = 66.7 bits (163), Expect = 1e-13
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
A C+ V + +V W+K+G+ ++ + R L + ++G Y+C A
Sbjct: 29 ATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEA 85
Query: 128 VNLVGFAEVQATLQCRG 144
+Q QC G
Sbjct: 86 GGQQLSFRLQVAGQCFG 102
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 86.7 bits (214), Expect = 2e-18
Identities = 34/238 (14%), Positives = 55/238 (23%), Gaps = 56/238 (23%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-DSSRITTKHDFG 560
P + N V+ G + C+ G + W E + G
Sbjct: 157 GVPTLKVQVPNAS-VDVGDDVLLRCQ--VEGRGLEQAGWILTELEQSATVMKSGGLPSLG 213
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
++ + C A N +G A + + + A +QL T
Sbjct: 214 LTLANV--TSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEM---------- 261
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
V G P W NG L
Sbjct: 262 -------------------------------HHWCIPFSV--DGQPAPSLRWLFNGSVLN 288
Query: 681 MGSRFHVQHDFGYV-------TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
S + L + + ++G Y A N G+A +S
Sbjct: 289 ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
Score = 81.7 bits (201), Expect = 8e-17
Identities = 32/237 (13%), Positives = 58/237 (24%), Gaps = 61/237 (25%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPI-KSGSRFTETNNF 238
P + N + G C++ + W + + + +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQ----AGWILTELEQSATVMKSGGLPSL 212
Query: 239 GFVALDIMQCLPE-DSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
G L + + + TC A N +G+A S + V
Sbjct: 213 G---LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS--------------------- 248
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
F ++ E + G + WL NG
Sbjct: 249 --------------------FPASVQLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSV 286
Query: 358 IQASNRVSTMHDFGYV-------ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ ++ + T L ++G YT A N G+A S
Sbjct: 287 LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
Score = 69.0 bits (168), Expect = 1e-12
Identities = 32/267 (11%), Positives = 55/267 (20%), Gaps = 58/267 (21%)
Query: 21 KETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVT-D 79
+E + + + T+ ++ C+ V
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQ---VEGR 185
Query: 80 SNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPE-DSGTYTCRAVNLVGFAEVQA 138
+ W + L + + + + TC A N VG AEV
Sbjct: 186 GLEQAGWILTEL--EQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV 243
Query: 139 TLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEG 198
+ F S++ E
Sbjct: 244 QVN------------------------------------------VSFPASVQLHTAVEM 261
Query: 199 QRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN-------NFGFVALDIMQCLPE 251
+ + W N + S L + Q
Sbjct: 262 HHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 319
Query: 252 DSGVYTCRAVNALGQAVTSGNLLVHSK 278
++G YT A N GQA S
Sbjct: 320 NNGNYTLLAANPFGQASASIMAAFMDN 346
Score = 55.9 bits (134), Expect = 2e-08
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 9/110 (8%)
Query: 497 DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK 556
+ Q V + E + + G P + W N L ++S I T+
Sbjct: 239 AEVSVQVNVSFPASVQLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTE 296
Query: 557 HDFGYVAMDLSH-------VRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ H + G Y A N G+A +
Sbjct: 297 FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 80.1 bits (198), Expect = 2e-18
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-E 548
H K+ F K L+ V +G + + D +V+W +N + +
Sbjct: 2 HHHHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQM 58
Query: 549 DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588
S+ + + +S D+ Y C
Sbjct: 59 SGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCST 98
Score = 79.7 bits (197), Expect = 3e-18
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 183 APIFTTSLKNC-EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK-SGSRFTETNNFGF 240
+ F L+ ++ +G + ++D+ +V+W N I+ SGS++ +
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L I QC D Y C G S L V
Sbjct: 72 RTLTISQCSLADDAAYQCVV----GGEKCSTELFV 102
Score = 79.0 bits (195), Expect = 6e-18
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDFG 692
+ F + L ++ +G + D +W NG E++M GS++ +
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
TL I++C AD Y C G ST L VK
Sbjct: 71 KRTLTISQCSLADDAAYQC----VVGGEKCSTELFVK 103
Score = 78.2 bits (193), Expect = 1e-17
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 9/109 (8%)
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIH-VAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
+ ++ F + + + V++ + D +V WL+NG IQ
Sbjct: 2 HHHHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQM 58
Query: 361 SN-RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
S + L D Y C G S+ LFV+
Sbjct: 59 SGSKYIFESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103
Score = 67.0 bits (164), Expect = 8e-14
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-GHRFRPIHDFGYVALD 111
K + + + + + D + +V+W KNG+ + + G ++ L
Sbjct: 19 QKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLT 75
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEV 136
I D Y C E+
Sbjct: 76 ISQCSLADDAAYQCVVGGEKCSTEL 100
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 79.8 bits (197), Expect = 2e-18
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
Q +++ + G C + D+ + W + V + +R T
Sbjct: 7 AQPWGVPVEVESLLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGEE-- 61
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+++ +P DSG+Y C + G T ++ V
Sbjct: 62 --VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 76.0 bits (187), Expect = 5e-17
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
+Q + + V + D + WLR+GV + SNR +
Sbjct: 6 QAQPWGVPVEVESLLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGEE- 61
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ + + P DSG Y C + G T ++ V
Sbjct: 62 ---VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 71.4 bits (175), Expect = 2e-15
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
+ +P + + + G C + D W +GV+L +R + +
Sbjct: 5 EQAQPWGVPVEVESLLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGE- 60
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+++ +PADSG+Y C + +G + S+ V
Sbjct: 61 ---EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 70.6 bits (173), Expect = 4e-15
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P V G C + D + W R+ L +S+R +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGEE---- 61
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+++ D G+Y C ++ G T S+ +
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 67.5 bits (165), Expect = 5e-14
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C + D + W ++G + +R R + +++ D+IP DSG Y C
Sbjct: 27 LQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGEE----VEVRDSIPADSGLYACVT 79
Query: 128 VNLVGFAEVQATLQ 141
+ G ++
Sbjct: 80 SSPSGSDTTYFSVN 93
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 85.5 bits (211), Expect = 3e-18
Identities = 42/369 (11%), Positives = 77/369 (20%), Gaps = 113/369 (30%)
Query: 68 AHFECKLE---PVTDSNLKVEWFKNGRPVTIG------------------HRFRPIHDFG 106
C L+ ++ W ++G ++ R +
Sbjct: 18 VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR 77
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLV-GFAEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165
+L + ED G YTC V G V L
Sbjct: 78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL------------------------- 112
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVP 225
P T ++ ++ C ++ W +
Sbjct: 113 -------------RVLAKPQNTAEVQKVQLTGEPVPMARCV-STGGRPPAQITWHSDLGG 158
Query: 226 IKSGSRFTETNNFGFVA---LDIMQCLPEDSGVYTCRAVNALGQA--VTSGNLLVHSKKS 280
+ + S+ + ++ D TC+ + + + + NL V+
Sbjct: 159 MPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP- 217
Query: 281 IQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF--EAR 338
V + A +AR
Sbjct: 218 -----------------------------------EVSISGYDNNWYLGQNEATLTCDAR 242
Query: 339 LIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE 398
P W P+ L + + T C N LG
Sbjct: 243 SNP---EPTGYNWSTTMGPLPPFAVAQGA------QLLIRPVDKPINTTLICNVTNALGA 293
Query: 399 AVTSSTLFV 407
T+ V
Sbjct: 294 RQAELTVQV 302
Score = 81.7 bits (201), Expect = 5e-17
Identities = 27/230 (11%), Positives = 53/230 (23%), Gaps = 48/230 (20%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P T +Q + + C G P ++ W + + ++S++
Sbjct: 117 KPQNTAEVQKV-QLTGEPVPMARCV-STGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVT 174
Query: 563 AMD---LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELE 619
L D CK + E ++ +
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV--------------------- 213
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVE 678
Y + + A C +P + W
Sbjct: 214 ------------YYPPEVSISGYDNNW-YLGQNEATLTCDA--RSNPEPTGYNWSTTMGP 258
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L F V L I + +C N G + +++V
Sbjct: 259 L---PPFAVAQGA---QLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 70.9 bits (173), Expect = 2e-13
Identities = 26/231 (11%), Positives = 44/231 (19%), Gaps = 54/231 (23%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSN--LKVEWFKNGRPVTIGHRFRPIHDFGYVA 109
T L C T ++ W + + +
Sbjct: 119 QNTAEVQKVQLTGEPVPMARCV---STGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 110 ---LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
++ + D TC+ + T+ LT + Y
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN-------LT----------VYYPP- 217
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHNNV 224
+ + N A C N W
Sbjct: 218 -----------------EVSISGYDNNWYLGQNEATLTCD---ARSNPEPTGYNWSTTMG 257
Query: 225 PIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
P+ + L I + C NALG + V
Sbjct: 258 PLPPFAVAQGAQ------LLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 63.6 bits (154), Expect = 4e-11
Identities = 27/248 (10%), Positives = 56/248 (22%), Gaps = 62/248 (25%)
Query: 505 VFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT---LKVEWFRNEKPLEDSSRITTKH---- 557
V + + G + C L ++ W R+ + + T+
Sbjct: 2 VVVQAPTQVPGFL-GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 558 --------------DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQ 603
+ ++ + +R EDEG Y C + + +
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRS---------VDIW 111
Query: 604 LETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPV 663
L P T + + C V
Sbjct: 112 LRVLAK--------------------------PQNTAEVQKVQ-LTGEPVPMARC-VSTG 143
Query: 664 GDPTMRFEWFVNGVELKMGSRFHVQHDFGYV---TLDITKCVPADSGVYMCKAINRAGEA 720
G P + W + + S+ + D CK + + E
Sbjct: 144 GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK 203
Query: 721 VSSTSLKV 728
++ +
Sbjct: 204 PQLLTVNL 211
Score = 61.3 bits (148), Expect = 3e-10
Identities = 31/244 (12%), Positives = 57/244 (23%), Gaps = 61/244 (25%)
Query: 185 IFTTSLKNCEIKEGQRAHFECRLI---PVSDNTMKVEWFHNNVPI-------KSGSRFTE 234
+ + G C L + ++ W + G ++E
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 235 TNNFGFVA-----------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
+ FVA L + ED G YTC V + + L
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL--------- 112
Query: 284 ETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG 343
V P T ++ + + G
Sbjct: 113 ---------------------------RVLAKPQNTAEVQKVQLTGEPVPMARCV-STGG 144
Query: 344 DSKLKVTWLRNGVPIQASNRVSTMHDFGYVA---LNFKYTYPEDSGTYTCRAVNELGEAV 400
++TW + + +++V + D TC+ +E E
Sbjct: 145 RPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKP 204
Query: 401 TSST 404
T
Sbjct: 205 QLLT 208
Score = 59.3 bits (143), Expect = 1e-09
Identities = 46/324 (14%), Positives = 74/324 (22%), Gaps = 67/324 (20%)
Query: 317 VFTQPMRDIHVAENQAAHFEARLI---PVGDSKLKVTWLRNGVPIQASNRVSTMH----- 368
V Q + + L ++TW R+G + T
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 369 -------------DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
+ +L ED G YTC VT L++
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCL-------FVTFPQGSRSVDIWLRV 114
Query: 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVT-------QQPSFTVQLNGPTELVEGEGTI 468
L K QN + + + E T + +
Sbjct: 115 -------LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPG 167
Query: 469 ITD-TQHPKGLEKIR--KLEDTEP------HKRPEVDDNATKQ------RPVFTKPLQNI 513
T L + D + H+ E T V N
Sbjct: 168 FLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDN- 226
Query: 514 DAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
+ A +C +P W PL + + + V
Sbjct: 227 NWYLGQNEATLTCDA--RSNPEPTGYNWSTTMGPLPPFAVAQGA------QLLIRPVDKP 278
Query: 573 DEGIYICKATNALGEAVTTASMKI 596
IC TNALG ++++
Sbjct: 279 INTTLICNVTNALGARQAELTVQV 302
Score = 35.8 bits (82), Expect = 0.044
Identities = 17/115 (14%), Positives = 27/115 (23%), Gaps = 22/115 (19%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRF---EWFVNGVELKMGSRFHVQH---------------- 689
G S C + W +G M Q
Sbjct: 13 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 72
Query: 690 --DFGYVTLDITKCVPADSGVYMCKAIN-RAGEAVSSTSLKVKSKSDIVSESLQP 741
+ +L + D G Y C + G L+V +K +E +
Sbjct: 73 GAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKV 127
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 84.9 bits (209), Expect = 4e-18
Identities = 20/233 (8%), Positives = 56/233 (24%), Gaps = 63/233 (27%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
A + G + + + W ++ P ++ +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA--------- 52
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQG 300
L + E++G Y + + + + +
Sbjct: 53 -TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL------------------- 92
Query: 301 RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI------PVGDSKLKVTWLRN 354
V + +V+ A + P + +L +W +
Sbjct: 93 ---------------IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKG 137
Query: 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
I + + + + +G YT + E ++ S++ +
Sbjct: 138 EDVIDTTQD-----------ITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179
Score = 76.8 bits (188), Expect = 2e-15
Identities = 38/343 (11%), Positives = 78/343 (22%), Gaps = 83/343 (24%)
Query: 80 SNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQAT 139
SNL W K+ +P L + D E++G+Y +
Sbjct: 34 SNLTYTWTKDDQPHENNTA----------TLTVADATSENAGSYKVTVQDTDT------- 76
Query: 140 LQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199
+ + + + T ++ +
Sbjct: 77 --MTSVESEVFLMEE--------------------------AELIVNITEPQHFYVSSQT 108
Query: 200 RAHFECRLI------PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDS 253
+ P + + W I + T I + + +
Sbjct: 109 DVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDIT-----------IQEFTADKN 157
Query: 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVS 313
GVYT + + S + + + L Y + I S
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSS 217
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
P T + L G + G ++ + H
Sbjct: 218 GMPNLT-------------IKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH----- 259
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLF--VESKASLQ 414
L + +D+ + C A + + K S++
Sbjct: 260 -LFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSME 301
Score = 74.1 bits (181), Expect = 2e-14
Identities = 24/247 (9%), Positives = 61/247 (24%), Gaps = 64/247 (25%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRL--IPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ G + + L W ++++P E+++ T
Sbjct: 3 FTVSIQSNKR-CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLT------ 55
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
++ +E+ G Y + + + + +A L + P+
Sbjct: 56 ----VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHF--------- 102
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV------PVGDPTMRFEWFVN 675
+ V P + + + W
Sbjct: 103 -------------------------YVSSQTDVELHATVKFSGGKTPADNYELHYSWSKG 137
Query: 676 GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735
+ + I + +GVY K + ++ +S S K+ + V
Sbjct: 138 EDVID-----------TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNV 186
Query: 736 SESLQPD 742
+ +
Sbjct: 187 DQDVVES 193
Score = 64.1 bits (155), Expect = 4e-11
Identities = 29/251 (11%), Positives = 64/251 (25%), Gaps = 53/251 (21%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLI------PVGDPTLKVEWFRNEKPLEDSSRITTKH 557
V Q+ V + + P + L W + E ++ + IT
Sbjct: 93 IVNITEPQHF-YVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDIT--- 148
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
+ A+ G+Y K ++ +AS +
Sbjct: 149 --------IQEFTADKNGVYTVKVWGESEDSAASAS----------TKIMLA-------- 182
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG- 676
+ E + T L + S + + T+++ W++
Sbjct: 183 ---TMNVDQDVVESK------TVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQRE 233
Query: 677 ---VELKMGSRFHVQHDFGYVT----LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+GS + +T L D+ + C A + +
Sbjct: 234 GQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAAS 293
Query: 730 SKSDIVSESLQ 740
+ E ++
Sbjct: 294 TSRKCSMEVVK 304
Score = 63.7 bits (154), Expect = 6e-11
Identities = 35/312 (11%), Positives = 76/312 (24%), Gaps = 33/312 (10%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARL--IPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
A + A + S L TW ++ P + + T+ D
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVAD--- 58
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDT 432
E++G+Y + S +F+ +A L ++ +
Sbjct: 59 -------ATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 433 SRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTI-ITDTQHPKGLEKIRKLEDT--EP 489
K + ++++ I I + K K+ +
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDS 171
Query: 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLI--------PVGDPTLKVEWF 541
+ + V G + + + + T+K W+
Sbjct: 172 AASASTKIMLATMNV--DQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWY 229
Query: 542 RNEK----PLEDSSRITTKHDFGYVAMD----LSHVRAEDEGIYICKATNALGEAVTTAS 593
+ P S + + + D +D + C A T
Sbjct: 230 LQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVE 289
Query: 594 MKIKTKAGLQLE 605
+ T +E
Sbjct: 290 VAASTSRKCSME 301
Score = 53.3 bits (127), Expect = 1e-07
Identities = 25/257 (9%), Positives = 58/257 (22%), Gaps = 74/257 (28%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE------PVTDSNLKVEWFKNGRPVTIGHRFRPIHDF 105
+T+P+ + ++ P + L W K +
Sbjct: 95 NITEPQHFYVS-SQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID----------- 142
Query: 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165
+ I + + +G YT + + A+
Sbjct: 143 TTQDITIQEFTADKNGVYTVKVWGESEDSAASAST------------------------- 177
Query: 166 DKSKYQRGEYIEETTTQAPIFTTS--LKNCEIKEGQRAHFECRLI--------PVSDNTM 215
A + +++ + G + + + T+
Sbjct: 178 -------------KIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTI 224
Query: 216 KVEWFHNN----VPIKSGSRFTETNNFGFVA----LDIMQCLPEDSGVYTCRAVNALGQA 267
K W+ P GS E + L +D+ + C A
Sbjct: 225 KYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIE 284
Query: 268 VTSGNLLVHSKKSIQTE 284
+ + + + E
Sbjct: 285 DETVEVAASTSRKCSME 301
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 79.3 bits (196), Expect = 5e-18
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG----SRFTET 235
++ + T L++ ++ G R VS+ +V W N V + +R+
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKK 279
+ L + ED G Y L+V K+
Sbjct: 62 KDGKRHILIFSDVVQEDRGRYQVIT----NGGQCEAELIVEEKQ 101
Score = 77.4 bits (191), Expect = 2e-17
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 12/105 (11%)
Query: 311 TVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN----RVS 365
+ S PV P+ D V V + +V W++NGV + + R
Sbjct: 3 SGSSGPVLIVTPLEDQQVFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYR 59
Query: 366 TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
D L F ED G Y + L VE K
Sbjct: 60 FKKDGKRHILIFSDVVQEDRGRYQVIT----NGGQCEAELIVEEK 100
Score = 72.8 bits (179), Expect = 8e-16
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS----SRITTKHDF 559
+ PL++ V G + V + +V W +N L +R K D
Sbjct: 9 VLIVTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEA 588
+ S V ED G Y EA
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNGGQCEA 93
Score = 68.9 bits (169), Expect = 2e-14
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 12/100 (12%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG----SRFHVQHDF 691
+ L ++ G V + + W NGVEL +R+ + D
Sbjct: 9 VLIVTPLEDQ-QVFVGDRVEMAVEV---SEEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L + V D G Y L V+ K
Sbjct: 65 KRHILIFSDVVQEDRGRYQVI----TNGGQCEAELIVEEK 100
Score = 61.2 bits (149), Expect = 1e-11
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT----IGHRFRPIHDFGYV 108
VT + + + + V++ +V W KNG +T R+R D
Sbjct: 12 VTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEV 136
L D + ED G Y AE+
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGGQCEAEL 95
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 79.0 bits (195), Expect = 5e-18
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
S P+ Q + +A + A + + GD ++WL+ G + +T+ + G
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCK--ATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L K D+GTYTC A + GE S+ L V
Sbjct: 63 --TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 74.7 bits (184), Expect = 2e-16
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P+ + N + A C+ GDP + W + T + G
Sbjct: 9 PIILQGPANQ-TLAVDGTALLKCK--ATGDPLPVISWLKEGFTFPGRDPRATIQEQG--T 63
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + ++R D G Y C AT++ GE +A + +
Sbjct: 64 LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 71.7 bits (176), Expect = 2e-15
Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
PI Q + +A C+ GDP W G + G
Sbjct: 6 SGPPIILQGPANQ-TLAVDGTALLKCKAT--GDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
TL I +D+G Y C A + +GE S L V
Sbjct: 63 --TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 70.1 bits (172), Expect = 7e-15
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPI-KSGSRFTETNN 237
++ PI N + A +C+ + + + + W R T
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCK---ATGDPLPVISWLKEGFTFPGRDPRATIQEQ 61
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
G L I D+G YTC A ++ G+ S L V
Sbjct: 62 -G--TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 58.9 bits (143), Expect = 5e-11
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ P + L G A +CK P+ + W K G I + G L
Sbjct: 12 LQGPANQT-LAVDGTALLKCKATGDPLP----VISWLKEGFTFPGRDPRATIQEQG--TL 64
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSA 146
I + D+GTYTC A + G A L S
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 87.2 bits (216), Expect = 6e-18
Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 466 GTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFS 525
+ +RK E + + + ++ +P F V EG++A+F
Sbjct: 446 PEPLPPLGRISNYSSLRKHRPQE-YSIRDAFWDRSEAQPRFIVKPYGT-EVGEGQSANFY 503
Query: 526 CRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL 585
CR+I V W ++++ L+ S + +++ + ++ V+ +D+G Y +A N+
Sbjct: 504 CRVI--ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 561
Query: 586 GEAVTTASMKI 596
G + +
Sbjct: 562 GTKEEIVFLNV 572
Score = 86.4 bits (214), Expect = 1e-17
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
+Y + + + P F E+ EGQ A+F CR+I S V W ++ +K
Sbjct: 467 QEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV--VTWHKDDRELK 524
Query: 228 SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
++ + N L I + +D G YT RA N+ G L V
Sbjct: 525 QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 81.0 bits (200), Expect = 5e-16
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
+ Q S +R +P F GT E+ EGQSA++ CRV+ P + W +
Sbjct: 463 KHRPQEYSIRDAFWDRSEAQPRFIVKPYGT-EVGEGQSANFYCRVIASSPPVV--TWHKD 519
Query: 676 GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
ELK ++ +++ L I + D G Y +A N G L V
Sbjct: 520 DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 80.7 bits (199), Expect = 7e-16
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 2/118 (1%)
Query: 290 SLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKV 349
+ S L++ Y D P F V E Q+A+F R+I S V
Sbjct: 457 NYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVI--ASSPPVV 514
Query: 350 TWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
TW ++ ++ S + ++ L +D G YT RA N G L V
Sbjct: 515 TWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 67.9 bits (166), Expect = 7e-12
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 36 SKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI 95
++ + + KP E + E A+F C++ + V W K+ R +
Sbjct: 469 YSIRDAFWDRSEAQPRFIVKPYGTE-VGEGQSANFYCRVIASSPP--VVTWHKDDRELKQ 525
Query: 96 GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
++ ++ L I +D G YT RA N G E L
Sbjct: 526 SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 82.4 bits (203), Expect = 6e-18
Identities = 39/248 (15%), Positives = 66/248 (26%), Gaps = 67/248 (27%)
Query: 507 TKPLQNIDAVEEGKNAHFSCRLI--PVGDPTLKVEWFRNEKPLEDS-------------- 550
T P Q I+ + G+ A+ C+ P L +EW + +
Sbjct: 4 TTPEQRIEKAK-GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 551 ----------SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600
+ G ++++++++ D G Y CK A G A + +
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV---- 118
Query: 601 GLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRV 660
KP T+ G C
Sbjct: 119 --------------------------------LVKPSGTRCFV-DGSEEIGNDFKLKCEP 145
Query: 661 VPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
G ++FEW M + + + + + SG Y C NR G
Sbjct: 146 KE-GSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASSEYSGTYSCTVQNRVGSD 202
Query: 721 VSSTSLKV 728
L V
Sbjct: 203 QCMLRLDV 210
Score = 77.0 bits (189), Expect = 4e-16
Identities = 37/247 (14%), Positives = 60/247 (24%), Gaps = 66/247 (26%)
Query: 187 TTSLKNCEIKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPIKSG--------------- 229
TT + E +G+ A+ C+ P + +EW + +
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 230 ---------SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
+ G ++++ D G Y C+ A G A L V K
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-- 121
Query: 281 IQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI 340
P T+ D +
Sbjct: 122 -----------------------------------PSGTRCFVDGSEEIGNDFKLKCE-P 145
Query: 341 PVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV 400
G L+ W + ++ K E SGTY+C N +G
Sbjct: 146 KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--ISVKNASSEYSGTYSCTVQNRVGSDQ 203
Query: 401 TSSTLFV 407
L V
Sbjct: 204 CMLRLDV 210
Score = 72.4 bits (177), Expect = 1e-14
Identities = 35/250 (14%), Positives = 61/250 (24%), Gaps = 67/250 (26%)
Query: 52 TVTKPKSIENLRERGHAHFECKL--EPVTDSNLKVEWFKNGRPVTIG------------- 96
++T P+ + A+ CK P L +EW + I
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 97 -----------HRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGS 145
H G ++++ + D GTY C+ G A + L
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV- 120
Query: 146 AGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFEC 205
P T + + G +C
Sbjct: 121 -------------------------------------KPSGTRCFVDGSEEIGNDFKLKC 143
Query: 206 RLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265
++ EW + + + + + E SG Y+C N +G
Sbjct: 144 E-PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--ISVKNASSEYSGTYSCTVQNRVG 200
Query: 266 QAVTSGNLLV 275
L V
Sbjct: 201 SDQCMLRLDV 210
Score = 63.2 bits (153), Expect = 2e-11
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P T+ + E G + C G L+ EW + + + +
Sbjct: 121 KPSGTRCFVDGS-EEIGNDFKLKCE-PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI 178
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + + +E G Y C N +G + +
Sbjct: 179 S--VKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 47.0 bits (111), Expect = 7e-06
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 26/111 (23%)
Query: 647 EIMEGQSAHYDCRVV--PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV---------- 694
E +G++A+ C+ P + EW ++ + ++ + + + +
Sbjct: 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 695 --------------TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
++++T +D G Y CK G A L V K
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Score = 45.1 bits (106), Expect = 3e-05
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Query: 319 TQPMRDIHVAENQAAHFE--ARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV--- 373
T P + I A+ + A+ L P L + WL + Q ++V ++ +
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 374 ---------------------ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
++N D GTY C+ G A L V K S
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 78.1 bits (193), Expect = 1e-17
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG--SRFTETNNFGF 240
+ T L++ G+R EC VS++ V+WF N I G SR+
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L I D+ Y+ +S L V K
Sbjct: 64 HILIIEGATKADAAEYSVMT----TGGQSSAKLSVDLK 97
Score = 77.8 bits (192), Expect = 1e-17
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ--ASNRVSTMHDF 370
S + T+ + D + E V + V W +NG I +R +
Sbjct: 5 SSGIMVTKQLEDTTAYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEG 61
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
L + D+ Y+ +S+ L V+ K+
Sbjct: 62 KKHILIIEGATKADAAEYSVMT----TGGQSSAKLSVDLKS 98
Score = 74.7 bits (184), Expect = 2e-16
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL--EDSSRITTKHDFGY 561
+ TK L++ G+ C V + V+WF+N + + SR + +
Sbjct: 8 IMVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEA 588
+ + D Y T A
Sbjct: 64 HILIIEGATKADAAEYSVMTTGGQSSA 90
Score = 69.7 bits (171), Expect = 1e-14
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG--SRFHVQHDFGY 693
+ T+ L T G+ +C V + +WF NG E+ G SR+ ++ +
Sbjct: 8 IMVTKQLEDT-TAYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
L I AD+ Y SS L V KS S
Sbjct: 64 HILIIEGATKADAAEYSVM----TTGGQSSAKLSVDLKSGPSS 102
Score = 60.0 bits (146), Expect = 2e-11
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVAL 110
+ + EC+ V++ + V+WFKNG + G R+R + L
Sbjct: 11 TKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEV 136
I D+ Y+ A++
Sbjct: 67 IIEGATKADAAEYSVMTTGGQSSAKL 92
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 78.7 bits (194), Expect = 1e-17
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
S PV Q + VA + G + W ++GV + + + G
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSRIKQLENG- 62
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L +Y D+G YTC A GEA S+ + V+
Sbjct: 63 -VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGV 101
Score = 75.6 bits (186), Expect = 1e-16
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
PV + N V SC G P + W ++ + + + G
Sbjct: 9 PVIRQGPVNQ-TVAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSRIKQLENG--V 63
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + + + D G Y C A+ GEA +A ++++
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
Score = 72.9 bits (179), Expect = 1e-15
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI-KSGSRFTETNNF 238
++ P+ N + C + W + V + SR + N
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSRIKQLEN- 61
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
G L I D+G YTC A G+A S + V
Sbjct: 62 G--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP 102
Score = 71.7 bits (176), Expect = 3e-15
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 5/105 (4%)
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
P+ Q + + C G P W +GV + Q +
Sbjct: 5 SSGPPVIRQGPV-NQTVAVDGTFVLSCVAT--GSPVPTILWRKDGVLVSTQDSRIKQLEN 61
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
G L I D+G Y C A +GEA S ++V+ V
Sbjct: 62 G--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQ 104
Score = 57.9 bits (140), Expect = 2e-10
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
P + + G C P + W K+G V+ + G
Sbjct: 12 RQGPVNQT-VAVDGTFVLSCVATGSPVPT------ILWRKDGVLVSTQDSRIKQLENG-- 62
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQN 154
L I D+G YTC A G A A ++ + + +
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRP 108
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 77.5 bits (191), Expect = 2e-17
Identities = 13/96 (13%), Positives = 23/96 (23%), Gaps = 7/96 (7%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
++ + +R C + +V W + +
Sbjct: 13 WIVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRR 69
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L + EDSG Y C S + V
Sbjct: 70 LVLPAVQLEDSGEYLCEI----DDESASFTVTVTEP 101
Score = 76.3 bits (188), Expect = 5e-17
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
VS V+ + + + +V W ++G + S + +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L EDSG Y C + S T+ V
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEP 101
Score = 72.5 bits (178), Expect = 1e-15
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
V+ + AV + +C + P +V W ++ + + +S + + +
Sbjct: 13 WIVYPSGKVYVAAVR-LERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDTVR 68
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ L V+ ED G Y+C+ + + ++ +
Sbjct: 69 RLVLPAVQLEDSGEYLCEI----DDESASFTVTVT 99
Score = 71.3 bits (175), Expect = 4e-15
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 8/109 (7%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
++ + + C + P W +G E+ +Q +
Sbjct: 13 WIVYPSGKVYV-AAVRLERVVLTCEL---CRPWAEVRWTKDGEEVVESPALLLQKEDTVR 68
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDA 743
L + DSG Y+C+ + +S ++ V + S
Sbjct: 69 RLVLPAVQLEDSGEYLCE----IDDESASFTVTVTEPPVRIIYSGPSSG 113
Score = 64.4 bits (157), Expect = 1e-12
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 53 VTKPKSIENL--RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ P + C+ + +V W K+G V + L
Sbjct: 14 IVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRL 70
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEV 136
+ EDSG Y C + V
Sbjct: 71 VLPAVQLEDSGEYLCEIDDESASFTV 96
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 76.3 bits (188), Expect = 4e-17
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 314 QAPVFTQPM----RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+AP +T R V F G+ + WL+NG + +R+
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 370 FGYV-ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+L + P D G YTC NE G + L V
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 75.6 bits (186), Expect = 8e-17
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 501 KQRPVFTKPLQNID---AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH 557
K+ P +T + AV F C G+P + W +N K + RI
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYK 59
Query: 558 DFGYV-AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
++ + V D+G Y C N G T + +
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 75.6 bits (186), Expect = 8e-17
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 634 EKPIFTQLLTGTSE---IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD 690
P +T + + + C G+P W NG E K R
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 691 FGYV-TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+L + VP+D G Y C N G + L V
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 70.9 bits (174), Expect = 3e-15
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 182 QAPIFTTSLK----NCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETN 236
+AP +T + K + F C P N + W N K R
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNGKEFKQEHRIGGYK 59
Query: 237 NFGFV-ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+L + +P D G YTC N G + +L V
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 64.0 bits (156), Expect = 9e-13
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 12/99 (12%)
Query: 48 FIYYTVTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIH 103
+ + + + F C P + W KNG+ HR
Sbjct: 7 WTNTEKMEKRLHA-VPAANTVKFRCPAGGNPMP------TMRWLKNGKEFKQEHRIGGYK 59
Query: 104 DFGYV-ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+L + +P D G YTC N G L
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 79.4 bits (195), Expect = 6e-17
Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 50/227 (22%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFR---NEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
+ K C L V ++ + D +RI+ G+ +
Sbjct: 21 ENKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT---IPSYMIS 74
Query: 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
G+ C+A + + + + +
Sbjct: 75 YAGMVFCEAKINDESYQSIMYIVVVVGY-------------------RIYDVVLSPSH-- 113
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS--------R 684
E+ G+ +C + + F W + + +
Sbjct: 114 ------------GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 161
Query: 685 FHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ TL I +D G+Y C A + +ST ++V
Sbjct: 162 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208
Score = 70.2 bits (171), Expect = 8e-14
Identities = 29/226 (12%), Positives = 55/226 (24%), Gaps = 50/226 (22%)
Query: 196 KEGQRAHFECRLIPVSDNTMKVEW---FHNNVPIKSGSRFTETNNFGFVALDIMQCLPED 252
+ + C S + + V + + G+R + + GF I +
Sbjct: 22 NKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT---IPSYMISY 75
Query: 253 SGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTV 312
+G+ C A + ++V I
Sbjct: 76 AGMVFCEAKINDESYQSIMYIVVVVGYRI------------------------------- 104
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
V P I ++ + + + W Q V+
Sbjct: 105 --YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162
Query: 373 VALNFKYTY--------PEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ K+ D G YTC A + L S+ + V
Sbjct: 163 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208
Score = 70.2 bits (171), Expect = 1e-13
Identities = 28/240 (11%), Positives = 50/240 (20%), Gaps = 46/240 (19%)
Query: 48 FIYYTVTKPKSIENLRERGH-AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFG 106
FI + + + C + SNL V I
Sbjct: 6 FIASVSDQHGVVYITENKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISWDS 62
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
I + +G C A + +
Sbjct: 63 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIV------------------------- 97
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI 226
+ + + E+ G++ C + + W + +
Sbjct: 98 ---------VVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH 148
Query: 227 KSGSRFTE--------TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+ L I D G+YTC A + L S + VH
Sbjct: 149 QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208
Score = 39.8 bits (92), Expect = 0.002
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 649 MEGQSAHYDCRV-VPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
+ ++ C + + ++ + + G+R G+ I + + +G
Sbjct: 22 NKNKTVVIPCLGSISNLNVSLC-ARYPEKRFVPDGNRISWDSKKGFT---IPSYMISYAG 77
Query: 708 VYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKE 751
+ C+A S + V I L P ++ + E
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 121
Score = 36.7 bits (84), Expect = 0.016
Identities = 9/97 (9%), Positives = 19/97 (19%), Gaps = 3/97 (3%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
+ I +N+ S L V+ + + +
Sbjct: 10 VSDQHGVVYITENKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+G C A + + V
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR 103
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 78.9 bits (194), Expect = 7e-17
Identities = 27/226 (11%), Positives = 39/226 (17%), Gaps = 65/226 (28%)
Query: 198 GQRAHFECRLIPVSDN-TMKVEWFHNNVPIKS-----------------GSRFTETNNFG 239
G+R VS ++V WF + F +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
L + G Y CR + +L V
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP--------------------- 104
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFE--ARLIPVGDSKLKVTWLRNG-- 355
+ + V WL
Sbjct: 105 ----------------LTLSVHSERSQFPDFSVLTVTCTVN----AFPHPHVQWLMPEGV 144
Query: 356 --VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399
P A+ V D TC N+ EA
Sbjct: 145 EPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 77.8 bits (191), Expect = 2e-16
Identities = 25/225 (11%), Positives = 43/225 (19%), Gaps = 66/225 (29%)
Query: 67 HAHFECKLEPVTDS-NLKVEWFKNGRP-------------VTIGHRFRPIH----DFGYV 108
V+ ++V WFK G + I FR
Sbjct: 8 RVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTF 67
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
L + G Y CR Q L
Sbjct: 68 FLVVTAANISHDGNYLCRMKLGETEVTKQEHL---------------------------- 99
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNN--- 223
+ + + + + + C + P V+W
Sbjct: 100 ----------SVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHP----HVQWLMPEGVE 145
Query: 224 -VPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267
P + + + + TC N +A
Sbjct: 146 PAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 75.1 bits (184), Expect = 1e-15
Identities = 22/227 (9%), Positives = 39/227 (17%), Gaps = 61/227 (26%)
Query: 516 VEEGKNAHFSCRLIPV-GDPTLKVEWFRNEKPLED-----------------SSRITTKH 557
G+ + V P ++V WF+ E
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
+ ++ +G Y+C+ E L P
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQE----------HLSVVKP-------- 104
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG- 676
+ + + C V P +W +
Sbjct: 105 ------------------LTLSVHSERSQ-FPDFSVLTVTCTVN--AFPHPHVQWLMPEG 143
Query: 677 ---VELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
+ D C N EA
Sbjct: 144 VEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 62.4 bits (151), Expect = 3e-11
Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 7/89 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE----KPLEDSSRITTKHDF 559
+ + + +C + P V+W E P + + + D
Sbjct: 105 LTLSVHSERS-QFPDFSVLTVTCTV--NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEA 588
+ C N EA
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 48.5 bits (115), Expect = 2e-06
Identities = 16/108 (14%), Positives = 25/108 (23%), Gaps = 18/108 (16%)
Query: 649 MEGQSAHYDCRVVPV-GDPTMRFEWFVNGVELKM-----------------GSRFHVQHD 690
G+ V P + WF G + F +
Sbjct: 4 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS 63
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
L +T + G Y+C+ E L V + S
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHS 111
Score = 39.2 bits (91), Expect = 0.002
Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 17/99 (17%)
Query: 343 GDSKLKVTWLRNGVPIQAS----------------NRVSTMHDFGYVA-LNFKYTYPEDS 385
+++V+W + G + +H L
Sbjct: 20 LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 79
Query: 386 GTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQ 424
G Y CR E L V +L + ++
Sbjct: 80 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD 118
Score = 37.3 bits (86), Expect = 0.010
Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 18/99 (18%)
Query: 52 TVTKPKSIENLRER------GHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRP-- 101
+V KP ++ ER C + P V+W
Sbjct: 100 SVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHP----HVQWLMPEGVEPAPTAANGGV 155
Query: 102 -IHDFGYVALDIIDTI-PEDSGTYTCRAVNLVGFAEVQA 138
G +++ + ++ TC N E
Sbjct: 156 MKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE--EAHG 192
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 75.5 bits (186), Expect = 8e-17
Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 10/102 (9%)
Query: 178 ETTTQAPIFTT---SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE 234
+ + P+ + +R C +S W+ + ++
Sbjct: 2 SSGSSGPVHILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVV 58
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ L + + +DSG + CR + V
Sbjct: 59 KMDGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ 96
Score = 72.4 bits (178), Expect = 1e-15
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 313 SQAPVF---TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
S PV Q + ++ + TW ++G ++ S + D
Sbjct: 5 SSGPVHILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKMD 61
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L +DSG + CR + V+
Sbjct: 62 GRKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ 96
Score = 69.0 bits (169), Expect = 2e-14
Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 504 PVFTKPLQNIDA-VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P + + +C + W+++ + +E+S + K D
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKMDGRKH 65
Query: 563 AMDLSHVRAEDEGIYICKATNALGEA 588
+ L + +D G + C+
Sbjct: 66 RLILPEAKVQDSGEFECRTEGVSAFF 91
Score = 69.0 bits (169), Expect = 2e-14
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADS 706
+ C + W+ +G +++ V+ D L + + DS
Sbjct: 21 TFTTSERVVLTCEL---SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDS 77
Query: 707 GVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
G + C R + + V+ S S
Sbjct: 78 GEFEC----RTEGVSAFFGVTVQDPSGPSS 103
Score = 67.8 bits (166), Expect = 4e-14
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 53 VTKPKSIENL--RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ P+ +L C+ ++ + W+K+G+ V D L
Sbjct: 11 ILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKMDGRKHRL 67
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEV 136
+ + +DSG + CR + F V
Sbjct: 68 ILPEAKVQDSGEFECRTEGVSAFFGV 93
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 76.6 bits (188), Expect = 8e-17
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 12/123 (9%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNN---VPIKSGSRFT 233
+ + +F + +K G+ F ++ + ++WF + K+G
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLL-RKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 234 ------ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
+ + I++ +G Y C S +L VH
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDS 121
Query: 288 GES 290
G S
Sbjct: 122 GPS 124
Score = 67.3 bits (164), Expect = 1e-13
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 12/113 (10%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARL--IPVGDSKLKVTWLRN---------GVPIQ 359
+ S +F + + V + F A++ + K + W + G +Q
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLL-RKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 360 ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ +G Y C + S L V
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114
Score = 66.6 bits (162), Expect = 2e-13
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL---KVEWFRN---EKPLEDSSRITTKH 557
+F + Q V+ G++ F ++ + L ++WF+ + + + K
Sbjct: 8 ILFIEKPQGG-TVKVGEDITFIAKV--KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64
Query: 558 DF------GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
F M + + G Y C+ T + +++
Sbjct: 65 TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
Score = 62.3 bits (151), Expect = 6e-12
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 15/109 (13%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM---RFEWF---------VNGVELKMGS 683
+F + G + G+ + +V + + +WF G L++
Sbjct: 8 ILFIEKPQGG-TVKVGEDITFIAKVK--AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732
F + I K +G Y C+ + S L+V +
Sbjct: 65 TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
Score = 60.4 bits (146), Expect = 4e-11
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKN---------GRPVTIGHRFRP 101
+ KP+ + F K++ + ++WFK G+ + + F
Sbjct: 11 IEKPQGGTV-KVGEDITFIAKVKAEDLLRKP-TIKWFKGKWMDLASKAGKHLQLKETFER 68
Query: 102 IHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ II +G Y C F L+
Sbjct: 69 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 76.2 bits (187), Expect = 1e-16
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 16/109 (14%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEK-------PLEDSSRIT 554
F + + G + C VG P +++W+ + L D +R+
Sbjct: 20 HMAGFVQAPLSQQ-RWVGGSVELHCEA--VGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 555 TKHDFGYVAMD------LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
H + + ED G Y C+A+N T + ++K
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
Score = 68.1 bits (166), Expect = 8e-14
Identities = 26/113 (23%), Positives = 36/113 (31%), Gaps = 16/113 (14%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE-------LKMG 682
R F Q + G S C V G P +W+ G L G
Sbjct: 16 PRGSHMAGFVQAPLSQ-QRWVGGSVELHCEAV--GSPVPEIQWWFEGQGPNDICSQLWDG 72
Query: 683 SRFHVQHDFGYV------TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+R H T+ I V D+G Y C+A N + + +VK
Sbjct: 73 ARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
Score = 68.1 bits (166), Expect = 8e-14
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 18/129 (13%)
Query: 301 RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
+ +S + S F Q + VG ++ W G
Sbjct: 7 HHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEA--VGSPVPEIQWWFEGQGPND 64
Query: 361 SNRV-------------STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL-- 405
+T H ++ ED+GTY CRA N+ +
Sbjct: 65 ICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Query: 406 -FVESKASL 413
+V ++A +
Sbjct: 125 KWVRAQAVV 133
Score = 63.5 bits (154), Expect = 4e-12
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN-------VPIKSGSRFTE 234
F + + + G C V +++W+ + G+R
Sbjct: 20 HMAGFVQAPLSQQRWVGGSVELHCEA--VGSPVPEIQWWFEGQGPNDICSQLWDGARLDR 77
Query: 235 TNNFGFVA------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ + I + ED+G Y CRA N + + V
Sbjct: 78 VHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 49.2 bits (117), Expect = 4e-07
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 24/109 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTI-------GHRFRP 101
V P S + G C+ P +++W+ G+ G R
Sbjct: 25 VQAPLSQQ-RWVGGSVELHCEAVGSPVP------EIQWWFEGQGPNDICSQLWDGARLDR 77
Query: 102 IHDFGYVA------LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRG 144
+H + I + ED+GTY CRA N + + +
Sbjct: 78 VHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKW 126
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 79.4 bits (195), Expect = 2e-16
Identities = 41/341 (12%), Positives = 70/341 (20%), Gaps = 95/341 (27%)
Query: 80 SNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQAT 139
V W + + +GTYTC N
Sbjct: 36 DPDFVRWTFKTYFNEMVENKKNE-------WIQEKAEATRTGTYTCSNSN---------- 78
Query: 140 LQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199
I KE
Sbjct: 79 -------------------------------GLTSSIYVFVRDPAKLFLVGLPLFGKEDS 107
Query: 200 RAHFECRLIPVSDN-TMKVEWFH-NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
A C ++D + + + + F G ++ +
Sbjct: 108 DALVRCP---LTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKR--AYHRLCVR 162
Query: 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV 317
C A G + S + + + + PV
Sbjct: 163 CAAQRD-GTWLHSDKFTLK-------------------------------VREAIKAIPV 190
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV-------STMHDF 370
+ P + + I + + WL+ Q +V +
Sbjct: 191 VSVPETSHLLKKGDTFTVVCT-IKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYE 249
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
L +DSG + C A N G A ++TL V K
Sbjct: 250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290
Score = 76.7 bits (188), Expect = 2e-15
Identities = 42/313 (13%), Positives = 85/313 (27%), Gaps = 59/313 (18%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
P ++ V V W +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCI----DPDF--VRWTFKTYFNEMVENKKNE------ 58
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTS 433
+ +GTYTC N L ++ +FV A L L
Sbjct: 59 -WIQEKAEATRTGTYTCSNSNGLTSSIY---VFVRDPAKLFLVGLP-------------- 100
Query: 434 RFKRKEEEEV----EVTQQPSFTVQL-NGPTELVEGEGTIITDTQHPKGLEKIRKLEDT- 487
KE+ + +T L + + + T + + + ++ +++
Sbjct: 101 -LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRL 159
Query: 488 ----------EPHKRPEVD---DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP 534
+ A K PV + P + +++G C I
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSH-LLKKGDTFTVVCT-IKDVST 217
Query: 535 TLKVEWFRNEKPLEDSSRITTKHDFGYVAMD-------LSHVRAEDEGIYICKATNALGE 587
++ W + + +++ +S R +D G+++C A N G
Sbjct: 218 SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGS 277
Query: 588 AVTTASMKIKTKA 600
A T ++K+ K
Sbjct: 278 ANVTTTLKVVEKG 290
Score = 76.3 bits (187), Expect = 2e-15
Identities = 37/224 (16%), Positives = 64/224 (28%), Gaps = 45/224 (20%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFR-NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
+E +A C + + K L G ++ RA
Sbjct: 103 GKEDSDALVRCP--LTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNV--KRAYHR 158
Query: 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634
C A G + + +K + + A P+ PE +
Sbjct: 159 LCVRCAAQRD-GTWLHSDKFTLKVREAI------------------KAIPVVSVPETSH- 198
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF--- 691
+ +G + C + ++ W + + ++
Sbjct: 199 ------------LLKKGDTFTVVCTIK-DVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGD 245
Query: 692 ----GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
TL I+ DSGV+MC A N G A +T+LKV K
Sbjct: 246 FNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 67.1 bits (163), Expect = 4e-12
Identities = 40/245 (16%), Positives = 68/245 (27%), Gaps = 54/245 (22%)
Query: 49 IYYTVTKPKSI------ENLRERGHAHFECKLEPVTDSNLK-VEWFK-NGRPVTIGHRFR 100
IY V P + +E A C P+TD + + +G+ + F
Sbjct: 84 IYVFVRDPAKLFLVGLPLFGKEDSDALVRC---PLTDPQVSQYSLIECDGKSLPTDLTFV 140
Query: 101 PIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQ 160
P G ++ C A + T L
Sbjct: 141 PNPKAGITIKNV--KRAYHRLCVRCAAQR------------------------DGTWLHS 174
Query: 161 IQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF 220
++ + E P+ + + +K+G C I ++ W
Sbjct: 175 DKFTL---------KVREAIKAIPVVSVPETSHLLKKGDTFTVVCT-IKDVSTSVNSMWL 224
Query: 221 HNNVPIKSGSRFTETNNFGFVA-------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNL 273
N + ++ + L I +DSGV+ C A N G A + L
Sbjct: 225 KMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284
Query: 274 LVHSK 278
V K
Sbjct: 285 KVVEK 289
Score = 60.1 bits (145), Expect = 6e-10
Identities = 22/227 (9%), Positives = 39/227 (17%), Gaps = 59/227 (25%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
P + ++ G C + V W +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCI------DPDFVRWTFKTYFNEMVENKKNE------ 58
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGR 301
+ +G YTC N L
Sbjct: 59 -WIQEKAEATRTGTYTCSNSNGLT------------------------------------ 81
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVPIQA 360
S I V + E+ A + + + +G +
Sbjct: 82 ----SSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCP--LTDPQVSQYSLIECDGKSLPT 135
Query: 361 SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
G C A + G + S +
Sbjct: 136 DLTFVPNPKAGI--TIKNVKRAYHRLCVRCAAQRD-GTWLHSDKFTL 179
Score = 58.6 bits (141), Expect = 2e-09
Identities = 27/232 (11%), Positives = 43/232 (18%), Gaps = 60/232 (25%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
P + VE G +C V W E +
Sbjct: 11 SPPSIHPAQSEL-IVEAGDTLSLTCI----DPDF--VRWTFKTYFNEMVENKKNE----- 58
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
A G Y C +N L ++ +
Sbjct: 59 --WIQEKAEATRTGTYTCSNSNGLTSSIY---------------------------VFVR 89
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF-VNGVELK 680
E A C + ++ +G L
Sbjct: 90 DPAKLFLVGLPL-------------FGKEDSDALVRCPL--TDPQVSQYSLIECDGKSLP 134
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSK 731
F G ++ + C A S +LKV+
Sbjct: 135 TDLTFVPNPKAGITIKNVKR--AYHRLCVRCAAQRDGTWLHSDKFTLKVREA 184
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 80.2 bits (197), Expect = 4e-16
Identities = 42/375 (11%), Positives = 91/375 (24%), Gaps = 102/375 (27%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIH-----------------DFGYVAL 110
C +++ W + + +G++ + D G L
Sbjct: 12 VELTCTASQ--KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I + EDS TY C +++ Q+
Sbjct: 70 IIKNLKIEDSDTYICEV-------------------------EDQKEEVQLLVFG----- 99
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
T+ + + +GQ ++ V+ G
Sbjct: 100 ----------------LTANSDTHLLQGQSLTLTLES--PPGSSPSVQCRSPRGKNIQGG 141
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
+ L + Q +DSG +TC + + +++V + + + E
Sbjct: 142 K----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEG 191
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
+ V + + + ++A S +
Sbjct: 192 -------------------EQVEFSFPLA--FTVEKLTGSGELWWQAERASSSKSWITFD 230
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYT----YPEDSGTYTCRAVNELGEAVTSSTLF 406
V ++ + + + L+ SG T + G+ L
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLV 290
Query: 407 VESKASLQLDTQNEA 421
V LQ + E
Sbjct: 291 VMRATQLQKNLTCEV 305
Score = 77.1 bits (189), Expect = 3e-15
Identities = 51/414 (12%), Positives = 103/414 (24%), Gaps = 95/414 (22%)
Query: 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT-----------------ETNNF 238
K+G C +++ W ++N G++ + +
Sbjct: 7 KKGDTVELTCT--ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
G L I EDS Y C
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEV-------------------------------------- 86
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
E + + D H+ + Q+ S V
Sbjct: 87 -----EDQKEEVQLLVFGLTANS--DTHLLQGQSLTLTLES--PPGSSPSVQCRSPRGKN 137
Query: 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS-LQLDT 417
+ L+ +DSGT+TC + + + V + +
Sbjct: 138 IQGGKT----------LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVY 187
Query: 418 QNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPK- 476
+ E + + K E+ + + + + +L E ++ TQ PK
Sbjct: 188 KKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKL 247
Query: 477 GLEKIRKLEDTEPHKRPEVDD------NATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIP 530
+ K L T P P+ + + + + + +C +
Sbjct: 248 QMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWG 307
Query: 531 VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584
P L + K + S R V + G++ C +++
Sbjct: 308 PTSPKLMLSLKLENKEAKVSKREK-----------AVWVLNPEAGMWQCLLSDS 350
Score = 75.6 bits (185), Expect = 1e-14
Identities = 30/286 (10%), Positives = 67/286 (23%), Gaps = 55/286 (19%)
Query: 496 DDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT 555
D Q VF + + +G++ + + V+ + +
Sbjct: 88 DQKEEVQLLVFGLTANSDTHLLQGQSLTLTLES--PPGSSPSVQCRSPRGKNIQGGKTLS 145
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
+S + +D G + C + + + + +
Sbjct: 146 ----------VSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL---------AFQKASSIV 186
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
+ E EK + + + F+
Sbjct: 187 YKKEGEQVEFSFPLAFTVEK------------LTGSGELWWQAERASSSKSWITFDLKNK 234
Query: 676 GVELKMGSRFHVQHDFGYVTLDITKCV----PADSGVYMCKAINRAGEAVSSTSLKVKSK 731
V +K ++ + L +T A SG + G+ +L V
Sbjct: 235 EVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA 294
Query: 732 SDI-------VSESLQPDA---WKK--------IQLKEAEMNKPDA 759
+ + V P K + K + P+A
Sbjct: 295 TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEA 340
Score = 71.0 bits (173), Expect = 3e-13
Identities = 47/372 (12%), Positives = 97/372 (26%), Gaps = 101/372 (27%)
Query: 40 ENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF 99
E+ K++ + + +T L + + P S+ V+ G +
Sbjct: 87 EDQKEEVQLLVFGLTANSDTH-LLQGQSLTLTLESPP--GSSPSVQCRSPRGKNIQGGK- 142
Query: 100 RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLE 159
L + +DSGT+TC + E + +
Sbjct: 143 ---------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV------------------ 175
Query: 160 QIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEW 219
+ K Y +E F + ++ ++ S + + +
Sbjct: 176 ----VLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDL 231
Query: 220 FHNNVPIKSGSRF--TETNNFGFVALDIMQCLP--EDSGVYTCRAVNALGQAVTSGNLLV 275
+ V +K ++ + + L + Q LP SG T G+ NL+V
Sbjct: 232 KNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV 291
Query: 276 HSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF 335
TQ ++L+ V
Sbjct: 292 ------MRATQLQKNLT-----------------CEVWGPT------------------- 309
Query: 336 EARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNE 395
KL ++ + S R + ++G + C +
Sbjct: 310 --------SPKLMLSLKLENKEAKVSKR-----------EKAVWVLNPEAGMWQCLLSDS 350
Query: 396 LGEAVTSSTLFV 407
G+ + S + V
Sbjct: 351 -GQVLLESNIKV 361
Score = 69.1 bits (168), Expect = 1e-12
Identities = 22/232 (9%), Positives = 58/232 (25%), Gaps = 76/232 (32%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD---------- 565
++G +C +++ W + + ++ + D
Sbjct: 6 GKKGDTVELTCT--ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 566 -------LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ +++ ED YIC+ + E ++
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEV-------------------------QLLVF 98
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
A+ + +++GQS + + +
Sbjct: 99 GLTANS--------------------DTHLLQGQSLTLTLESP--PGSSPSVQCRSPRGK 136
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
G + TL +++ DSG + C + + + V +
Sbjct: 137 NIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 178
Score = 59.4 bits (143), Expect = 2e-09
Identities = 44/423 (10%), Positives = 101/423 (23%), Gaps = 118/423 (27%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVST-----------------MHDFGYVALNFKYTYPEDS 385
++ W + N+ S + D G L K EDS
Sbjct: 20 QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 79
Query: 386 GTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEV 445
TY C ++ E V + + + L L +E
Sbjct: 80 DTYICEVEDQKEE-VQLLVFGLTANSDTHLLQGQSLTL------------------TLES 120
Query: 446 TQQPSFTVQ--LNGPTELVEGEGTIITD-------------TQHPKGLEKIRKLEDTEPH 490
S +VQ + G+ ++ Q+ K +E +
Sbjct: 121 PPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 180
Query: 491 KRPEVDDNATKQRPVFTKPLQ-NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED 549
K + ++ F+ PL ++ + + + + E ++
Sbjct: 181 KASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKR 240
Query: 550 SSRITTKHDFGYVAMDLS----HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLE 605
++ + + L+ + G G+ ++ +
Sbjct: 241 VTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR------- 293
Query: 606 TQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD 665
+ C V
Sbjct: 294 -------------------------------------------ATQLQKNLTCEVWGPTS 310
Query: 666 PTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725
P + + E K+ R + ++G++ C + +G+ + ++
Sbjct: 311 PKLMLSLKLENKEAKVSKR-----------EKAVWVLNPEAGMWQCLLSD-SGQVLLESN 358
Query: 726 LKV 728
+KV
Sbjct: 359 IKV 361
Score = 56.7 bits (136), Expect = 1e-08
Identities = 32/274 (11%), Positives = 72/274 (26%), Gaps = 71/274 (25%)
Query: 10 PQDSSPYL---SSKKETSYHWQNVPVPEWSKEQENAKKKKNF-IYYTVTKPKSIENLRER 65
QDS + ++ ++ V + K KK+ + ++ ++E L
Sbjct: 151 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210
Query: 66 GHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI----PEDSG 121
G ++ + + S + + V + + + L + SG
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270
Query: 122 TYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTT 181
T G + L ++ +TQ + L
Sbjct: 271 NLTLALEAKTGKLHQEVNLV------VMRATQLQKNL----------------------- 301
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
C + + + + N K R
Sbjct: 302 ----------------------TCEVWGPTSPKLMLSLKLENKEAKVSKREK-------- 331
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ L ++G++ C ++ GQ + N+ V
Sbjct: 332 ---AVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361
Score = 44.8 bits (105), Expect = 7e-05
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-----------------QHDFG 692
+G + C +++F W + +G++ D G
Sbjct: 8 KGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735
L I DS Y+C+ ++ E V + + SD
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTH 107
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 72.1 bits (177), Expect = 1e-15
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ + AV G +C P+ ++ W ++ PL
Sbjct: 9 EEVQLVVEPEGG-AVAPGGTVTLTCE--VPAQPSPQIHWMKDGVPLPLPPSPV------- 58
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ L + +D+G Y C AT++ + ++ I
Sbjct: 59 --LILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 69.7 bits (171), Expect = 8e-15
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 11/97 (11%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
+ + VA ++ W+++GVP+
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCE--VPAQPSPQIHWMKDGVPLPLPPSPV----- 58
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L P+D GTY+C A + S + +
Sbjct: 59 ----LILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 65.9 bits (161), Expect = 2e-13
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 13/99 (13%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNN 237
+ + + + G C V ++ W + VP+
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCE---VPAQPSPQIHWMKDGVPLPLPPSPV---- 58
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L + + P+D G Y+C A ++ S + +
Sbjct: 59 -----LILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
Score = 61.7 bits (150), Expect = 6e-12
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 12/95 (12%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
E+ G + G + C V P+ + W +GV L +
Sbjct: 9 EEVQLVVEPEGG-AVAPGGTVTLTCEVP--AQPSPQIHWMKDGVPLPLPPSP-------- 57
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L + + P D G Y C A + + S ++ +
Sbjct: 58 -VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 53.6 bits (129), Expect = 4e-09
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
V +P+ + G C++ P ++ W K+G P+ + L
Sbjct: 14 VVEPEGGA-VAPGGTVTLTCEVPAQPS----PQIHWMKDGVPLPLPPSP---------VL 59
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ + P+D GTY+C A + + +
Sbjct: 60 ILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 72.5 bits (178), Expect = 2e-15
Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 10/110 (9%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
Y P L + V G+P W NG L+ HV++
Sbjct: 6 YYPPRVVSLEEPE----LRLEHCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 693 YV----TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
L K ++G Y A N G A + + + V E
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109
Score = 71.0 bits (174), Expect = 5e-15
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P + E + G+P + W N +PL +S I ++
Sbjct: 9 PRVVSLEEP----ELRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 564 MD----LSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + + G Y A N LG A T + +
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
Score = 69.5 bits (170), Expect = 2e-14
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
TV P E E + G+ + WL NG P++ S + +
Sbjct: 4 TVYYPPRVVSLEEPELRLE---HCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQ 58
Query: 371 GYVA----LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L F ++G YT A N LG A + +
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
Score = 62.9 bits (153), Expect = 4e-12
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 17/112 (15%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKSGSRFT----E 234
P + + + E + P + W HN P++ +
Sbjct: 8 PPRVVSLEEP---ELRLEHCIEFVVRGNPPP------TLHWLHNGQPLRESKIIHVEYYQ 58
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQ 286
L + ++G YT A N LG A + N + E
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVS 110
Score = 60.2 bits (146), Expect = 3e-11
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 17/101 (16%)
Query: 52 TVTKPKSIENLRE---RGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHD 104
TV P + +L E R E + P + W NG+P+ +
Sbjct: 4 TVYYPPRVVSLEEPELRLEHCIEFVVRGNPPP------TLHWLHNGQPLRESKIIHVEYY 57
Query: 105 FGYVA----LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L ++G YT A N +G A
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 75.3 bits (184), Expect = 3e-15
Identities = 29/273 (10%), Positives = 55/273 (20%), Gaps = 82/273 (30%)
Query: 507 TKPLQNIDAVEEGKNAHFSCRL-IPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
++ V G C + + W + P + +++ +
Sbjct: 6 RTTHTEVE-VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 566 -----------------------------LSHVRAEDEGIYICKATNALGEAVTTASMKI 596
L+HV +D G Y C+ ++ T
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ---WSIRTEFGLD 121
Query: 597 KTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHY 656
L++ P + E ++ EG
Sbjct: 122 AKSVVLKVTGHTP-----------SNNVHVSTAEVV--------------QVDEGNDITM 156
Query: 657 DCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV---------------------T 695
C W+ + Q
Sbjct: 157 TCPCT--DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARN 214
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L I D+G C+ GE + S +
Sbjct: 215 LVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 69.6 bits (169), Expect = 3e-13
Identities = 32/272 (11%), Positives = 51/272 (18%), Gaps = 81/272 (29%)
Query: 187 TTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTET---------- 235
T+ E+ G C +D + W P +S F
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 236 -------------------NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
N L + P+D G Y C+
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ-------------- 111
Query: 277 SKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFE 336
SI+TE L+ + V + V E
Sbjct: 112 --WSIRTEFGLDAKSVVLK------------VTGHTPSNNVHVSTAEVVQVDEGNDITMT 157
Query: 337 ARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY--------------- 381
+ VTW + + +
Sbjct: 158 CP--CTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNL 215
Query: 382 ------PEDSGTYTCRAVNELGEAVTSSTLFV 407
D+G C GE + +
Sbjct: 216 VIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 66.9 bits (162), Expect = 2e-12
Identities = 28/275 (10%), Positives = 52/275 (18%), Gaps = 82/275 (29%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRP--------- 101
TV + + G C + + W K P F+
Sbjct: 4 TVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGL 63
Query: 102 --------------------IHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ + L + P+D G Y C+ E
Sbjct: 64 GFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFG---- 119
Query: 142 CRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRA 201
+ T + ++ + ++ EG
Sbjct: 120 -------------------------LDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDI 154
Query: 202 HFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA------------------- 242
C V W+ ++ T
Sbjct: 155 TMTCP--CTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGA 212
Query: 243 --LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L I D+G C G+ + +
Sbjct: 213 RNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 71.7 bits (176), Expect = 3e-15
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 5/108 (4%)
Query: 626 PQEPERQYEKPIFT--QLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
P E P + L T G+ + G P + W G L S
Sbjct: 12 PVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ--GKPRPQVVWTKGGAPLD-TS 68
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
R HV+ + + +DSG Y + ++ ++V K
Sbjct: 69 RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 67.8 bits (166), Expect = 7e-14
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 501 KQRPVFTKPLQNIDA--VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
+ P P + G+ + G P +V W + PL D+SR+ +
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPF--QGKPRPQVVWTKGGAPL-DTSRVHVRTS 75
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ D G Y + T +++ KAG
Sbjct: 76 DFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118
Score = 65.5 bits (160), Expect = 4e-13
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 191 KNCEIKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQC 248
+ K G++ + P +V W P+ + SR + + Q
Sbjct: 32 QTYIRKVGEQLNLVVPFQGKP----RPQVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQA 86
Query: 249 LPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
DSG Y + + + V K
Sbjct: 87 ARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 65.1 bits (159), Expect = 5e-13
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Query: 312 VSQAPVFTQP---MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
+++ P P + + + G + +V W + G P+ ++RV
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPF--QGKPRPQVVWTKGGAPLD-TSRVHVRT 74
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ DSG Y E + + + V K
Sbjct: 75 SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 55.5 bits (134), Expect = 2e-09
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+V W K G P+ DF V + DSG Y ++
Sbjct: 55 QVVWTKGGAPLDTSRVHVRTSDFDTV-FFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 70.4 bits (173), Expect = 4e-15
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+ + + G C VG P +WF+NE PL ++
Sbjct: 3 KLQICVEPTSQ-KLMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHETKKL-------- 51
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTA 592
+ +V E +G Y C N +
Sbjct: 52 -YMVPYVDLEHQGTYWCHVYNDRDSQDSKK 80
Score = 62.4 bits (152), Expect = 3e-12
Identities = 12/95 (12%), Positives = 21/95 (22%), Gaps = 11/95 (11%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
+ + VG W +N +P+ +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHETKKL------- 51
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
Y E GTY C N+ + +
Sbjct: 52 --YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
Score = 60.0 bits (146), Expect = 2e-11
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 11/92 (11%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ ++ G +C V +WF N +P+ ++
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHETKKL---------Y 52
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ E G Y C N + ++
Sbjct: 53 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
Score = 59.7 bits (145), Expect = 2e-11
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 12/92 (13%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
K T ++M G + C V G P ++WF N + L ++
Sbjct: 3 KLQICVEPTSQ-KLMPGSTLVLQCVAV--GSPIPHYQWFKNELPLTHETKK--------- 50
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726
+ G Y C N S
Sbjct: 51 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82
Score = 48.5 bits (116), Expect = 2e-07
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 82 LKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+WFKN P+T + + E GTY C N + +
Sbjct: 33 PHYQWFKNELPLTHETKKL---------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 73.3 bits (180), Expect = 7e-15
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN- 362
+ + AP P ++ E + ++W R+G + +SN
Sbjct: 8 SALVPRGSHMYAPKLQGP-VAVYTWEGNQVNITCE--VFAYPSATISWFRDGQLLPSSNY 64
Query: 363 -RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ + L D G Y C AVN +G+ L
Sbjct: 65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
Score = 72.9 bits (179), Expect = 1e-14
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS--SRITTKHDFG 560
P P + EG + +C P+ + WFR+ + L S S I +
Sbjct: 19 APKLQGP-VAV-YTWEGNQVNITCE--VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPS 74
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
++++ D G Y C A N +G+ +
Sbjct: 75 ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
Score = 72.2 bits (177), Expect = 2e-14
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG--SRFTETNNFGF 240
AP EG + + C + + + WF + + S S N
Sbjct: 19 APKLQGP-VAVYTWEGNQVNITCE--VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA 75
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L++ D G Y C AVN +GQ L+
Sbjct: 76 SYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
Score = 69.1 bits (169), Expect = 2e-13
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG--SRFHVQHDFGYVTLDITKCVPA 704
EG + C V P+ WF +G L S + + L++T
Sbjct: 29 YTWEGNQVNITCEVF--AYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEN 86
Query: 705 DSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
D G Y C A+NR G+ L
Sbjct: 87 DFGNYNCTAVNRIGQESLEFILVQADTPS 115
Score = 59.8 bits (145), Expect = 3e-10
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFR-PIHDFGYVA 109
+ P ++ E + C V + + WF++G+ + + I++ +
Sbjct: 21 KLQGPVAVY-TWEGNQVNITC---EVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 110 -LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L++ D G Y C AVN +G ++ L
Sbjct: 77 YLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 69.8 bits (171), Expect = 1e-14
Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 11/104 (10%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ-----HD 690
P T L V G+P +WF NG L + H
Sbjct: 5 PTITFL----ESPTSDHHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
+ L + ++G Y A N G+ S I
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
Score = 67.5 bits (165), Expect = 5e-14
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTM-----HDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
G+ K + W NG + S + T H + L ++G YT A NE G
Sbjct: 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86
Query: 398 EAVTSSTLFVESK 410
+ +
Sbjct: 87 KDEKQISAHFMGW 99
Score = 66.7 bits (163), Expect = 1e-13
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 11/101 (10%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK-----HD 558
P T +++ + + G+P ++WF N L +S I TK H
Sbjct: 5 PTITF----LESPTSDHHWCIPFTV--KGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + L + + G Y A N G+ S
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
Score = 62.1 bits (151), Expect = 5e-12
Identities = 12/97 (12%), Positives = 23/97 (23%), Gaps = 15/97 (15%)
Query: 194 EIKEGQRAHFECRL----IPVSDNTMKVEWFHNNVPIKSGSRFT-----ETNNFGFVALD 244
+ P ++WF+N + + L
Sbjct: 12 SPTSDHHWCIPFTVKGNPKP------ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQ 65
Query: 245 IMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
+ ++G YT A N G+ + I
Sbjct: 66 LDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
Score = 59.4 bits (144), Expect = 4e-11
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 18/101 (17%)
Query: 53 VTKPKSIENLR---ERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPI--- 102
V +I L H ++ P ++WF NG +
Sbjct: 1 VHFAPTITFLESPTSDHHWCIPFTVKGNPKP------ALQWFYNGAILNESKYICTKIHV 54
Query: 103 --HDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
H + L + + ++G YT A N G E Q +
Sbjct: 55 TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 71.0 bits (174), Expect = 2e-14
Identities = 32/224 (14%), Positives = 57/224 (25%), Gaps = 61/224 (27%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ + + C+ ++ ++WFHN I + ++
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESD-SIQWFHNGNLIPTHTQ----------PS 53
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
+ DSG YTC+ SLS L
Sbjct: 54 YRFKANNNDSGEYTCQTGQT--------------------------SLSDPVHL------ 81
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
TV + Q + E + +KVT+ +NG + S+
Sbjct: 82 -------TVLFEWLVLQT-PHLEFQEGETIMLRCH-SWKDKPLVKVTFFQNGKSQKFSHL 132
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
T + SG Y C +S + +
Sbjct: 133 DPT--------FSIPQANHSHSGDYHCTGNIGYTL-FSSKPVTI 167
Score = 66.0 bits (161), Expect = 1e-12
Identities = 29/215 (13%), Positives = 52/215 (24%), Gaps = 61/215 (28%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V + + +C+ + ++WF N + ++ + D G
Sbjct: 16 VLQEDSVTLTCQ-GARSPESDSIQWFHNGNLIPTHTQPSY----------RFKANNNDSG 64
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C+ L
Sbjct: 65 EYTCQTGQTSLSDPVH------------LTVLFE-------------------------- 86
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
+ Q T E EG++ C P ++ +F NG K T
Sbjct: 87 WLVLQ--TPHLEFQEGETIMLRCHS-WKDKPLVKVTFFQNGKSQKFSHLDP--------T 135
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
I + + SG Y C S ++ V+
Sbjct: 136 FSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 57.5 bits (139), Expect = 9e-10
Identities = 32/199 (16%), Positives = 48/199 (24%), Gaps = 61/199 (30%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C+ + + ++WF NG + + DSG YTC+
Sbjct: 22 VTLTCQGARSPE-SDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQT 70
Query: 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187
TS + L + + E Q P
Sbjct: 71 GQ--------------------TSLSDPVHL-TVLF-------------EWLVLQTP--- 93
Query: 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQ 247
+ E +EG+ C +KV +F N K I Q
Sbjct: 94 ----HLEFQEGETIMLRCH-SWKDKPLVKVTFFQNGKSQKFSHLDPT--------FSIPQ 140
Query: 248 CLPEDSGVYTCRAVNALGQ 266
SG Y C
Sbjct: 141 ANHSHSGDYHCTGNIGYTL 159
Score = 39.0 bits (91), Expect = 0.002
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 16/97 (16%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPAD 705
+++ S C+ + +WF NG + ++ K D
Sbjct: 14 INVLQEDSVTLTCQGARSPESD-SIQWFHNGNLIPTHTQ----------PSYRFKANNND 62
Query: 706 SGVYMCKAINRAGEA-----VSSTSLKVKSKSDIVSE 737
SG Y C+ + V L +++ E
Sbjct: 63 SGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQE 99
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 71.2 bits (174), Expect = 2e-14
Identities = 24/232 (10%), Positives = 61/232 (26%), Gaps = 76/232 (32%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL----------EDSSRITTKHDFGYVAMD 565
++G +C +++ W + + + S++ + D D
Sbjct: 7 GKKGDTVELTCT--ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 566 -------LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ +++ ED YIC+ + E ++
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEV-------------------------QLLVF 99
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
A+ + +++GQS + + +
Sbjct: 100 GLTANS--------------------DTHLLQGQSLTLTLESP--PGSSPSVQCRSPRGK 137
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
G + TL +++ DSG + C + + + V +
Sbjct: 138 NIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179
Score = 60.0 bits (145), Expect = 2e-10
Identities = 28/216 (12%), Positives = 55/216 (25%), Gaps = 50/216 (23%)
Query: 196 KEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG 254
K+G C S +++ W ++N G++ + L +
Sbjct: 8 KKGDTVELTCT---ASQKKSIQFHWKNSNQIKILGNQGSF--------------LTKGPS 50
Query: 255 VYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ---RTSIIEDT 311
RA + L+ + L+ + Y E
Sbjct: 51 KLNDRADSRRSLWDQGNFPLI---------------IKNLKIEDSDTYICEVEDQKEEVQ 95
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
+ + D H+ + Q+ L S V +
Sbjct: 96 LLVFGLTANS--DTHLLQGQSLTLT--LESPPGSSPSVQCRSPRGKNIQGGKT------- 144
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L+ +DSGT+TC + + + V
Sbjct: 145 ---LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
Score = 56.1 bits (135), Expect = 3e-09
Identities = 27/227 (11%), Positives = 58/227 (25%), Gaps = 77/227 (33%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIH-----------------DFGYVAL 110
C +++ W + + +G++ + D G L
Sbjct: 13 VELTCTASQK--KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I + EDS TY C +++ Q+
Sbjct: 71 IIKNLKIEDSDTYICEV-------------------------EDQKEEVQLLVFG----- 100
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
T+ + + +GQ ++ V+ G
Sbjct: 101 ----------------LTANSDTHLLQGQSLTLTLE--SPPGSSPSVQCRSPRGKNIQGG 142
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ L + Q +DSG +TC + + +++V +
Sbjct: 143 K----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179
Score = 45.7 bits (108), Expect = 1e-05
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 13/101 (12%)
Query: 40 ENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF 99
E+ K++ + + +T L + + P S+ V+ G +
Sbjct: 88 EDQKEEVQLLVFGLTANSDTH-LLQGQSLTLTLESPP--GSSPSVQCRSPRGKNIQGGK- 143
Query: 100 RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
L + +DSGT+TC + E + +
Sbjct: 144 ---------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
Score = 44.6 bits (105), Expect = 3e-05
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-----------------QHDFG 692
+G + C +++F W + +G++ D G
Sbjct: 9 KGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735
L I DS Y+C+ ++ E V + + SD
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTH 108
Score = 33.0 bits (75), Expect = 0.22
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 17/84 (20%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMH-----------------DFGYVALNFKYTYPEDS 385
++ W + N+ S + D G L K EDS
Sbjct: 21 QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 80
Query: 386 GTYTCRAVNELGEAVTSSTLFVES 409
TY C ++ E +
Sbjct: 81 DTYICEVEDQKEEVQLLVFGLTAN 104
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 68.5 bits (167), Expect = 3e-14
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNN---VPIKSGSRFT---- 233
+F ++ E+ G F R+ + V+WF + K G
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLK-PPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 234 --ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ L I P +G Y C ++ NL VH
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 61.6 bits (149), Expect = 7e-12
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK---VEWFRN---EKPLEDSSRITTKH 557
+F Q+ V G + FS R+ G LK V+WF+ + + +
Sbjct: 5 GLFVMRPQDG-EVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 558 DF------GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + ++ + G Y C+ + + ++ +
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 60.0 bits (145), Expect = 3e-11
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR---FEWF---VNGVELKMGSRFHVQH 689
+F E+ G S + RV G ++ +WF + K+G +
Sbjct: 5 GLFVMRPQDG-EVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 690 DF------GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ L IT PA +G Y C+ + S+ +L V
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 58.5 bits (141), Expect = 9e-11
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK---VTWLRN---------GVPIQASN 362
+F +D V + F AR+ G S LK V W + G +Q +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L+ P +G+Y C + ++ L V
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 58.5 bits (141), Expect = 1e-10
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 11/99 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNL-KVEWFKN---------GRPVTIGHRFRPI 102
V +P+ E G F ++ + V+WFK G+ + + +
Sbjct: 8 VMRPQDGEVT-VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 103 HDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I D P +G+Y C F L
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 72.9 bits (178), Expect = 5e-14
Identities = 37/377 (9%), Positives = 66/377 (17%), Gaps = 103/377 (27%)
Query: 68 AHFECKLEPVTDSN--LKVEWFKNGRPVTI-----------------GHRFRPIHD-FGY 107
C S +V W K+ R + F
Sbjct: 32 VVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD 91
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
+ + ED G Y C ++
Sbjct: 92 GTIRLSRLELEDEGVYICEFATFPT--------------------------------GNR 119
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
+ + T L+ + ++ + C V W
Sbjct: 120 ESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCT-SANGKPPSVVSWETRLKGEA 178
Query: 228 SGSRFTETNNFGFVA--LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTET 285
N V ++ C + + S L V
Sbjct: 179 EYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ--------- 229
Query: 286 QHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFT-QPMRDIHVAENQAAHFE--ARLIPV 342
P T + + A P
Sbjct: 230 ----------------------------YEPEVTIEGFDGNWYLQRMDVKLTCKADANP- 260
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
+ W + +GTY C A N +G
Sbjct: 261 --PATEYHWTTLNGSLPKGVEAQ-----NRTLFFKGPINYSLAGTYICEATNPIGTRSGQ 313
Query: 403 STLFVESKASLQLDTQN 419
+ + A+L+ +
Sbjct: 314 VEVNITEAAALEHHHHH 330
Score = 72.5 bits (177), Expect = 8e-14
Identities = 44/332 (13%), Positives = 81/332 (24%), Gaps = 55/332 (16%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSK--LKVTWLRNG-----------------V 356
Q ++ S +VTW ++ V
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 357 PIQASNRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
RV + F + ED G Y C + L L
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE---------SQLNL 125
Query: 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVT-------QQPSFT--VQLNGPTELVEGEG 466
+ K ++++ + T + +L G E E
Sbjct: 126 TVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN 185
Query: 467 TIITDTQHPKGLEKIRKLEDTEP------HKRPEVDDNAT---KQRPVFTKPLQNIDAVE 517
T T + + + + ++ T + P T + +
Sbjct: 186 PNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYL 245
Query: 518 EGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
+ + +C+ +P + W L + F + G
Sbjct: 246 QRMDVKLTCKA--DANPPATEYHWTTLNGSLPKGVEAQNRTLF-----FKGPINYSLAGT 298
Query: 577 YICKATNALGEAVTTASMKIKTKAGLQLETQH 608
YIC+ATN +G + I A L+ H
Sbjct: 299 YICEATNPIGTRSGQVEVNITEAAALEHHHHH 330
Score = 70.2 bits (171), Expect = 5e-13
Identities = 28/234 (11%), Positives = 54/234 (23%), Gaps = 49/234 (20%)
Query: 509 PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS- 567
+ ++ K +C G P V W K + I + V
Sbjct: 140 AVLRAKKGQDDKVLVATCT-SANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRL 198
Query: 568 -HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMP 626
R + C + + L Q+
Sbjct: 199 VPSREAHQQSLACIVNYHMDRFKESL----------TLNVQYE----------------- 231
Query: 627 QEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELKMGSRF 685
P T + ++ C+ +P + W L G
Sbjct: 232 ---------PEVTIEGFDGNWYLQRMDVKLTCKAD--ANPPATEYHWTTLNGSLPKGVEA 280
Query: 686 HVQHDFGYVTLDITKCV-PADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
+ TL + + +G Y+C+A N G + + + +
Sbjct: 281 QNR------TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHH 328
Score = 65.9 bits (160), Expect = 1e-11
Identities = 29/262 (11%), Positives = 56/262 (21%), Gaps = 55/262 (20%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT--LKVEWFRNEKPLEDSSRITTKHDFGY 561
+ ++ G + C +V W ++ + + I
Sbjct: 15 SQVVQVNDSMYGFI-GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73
Query: 562 VAMD------------------LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQ 603
V LS + EDEG+YIC+ + L
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE---------SQLN 124
Query: 604 LETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPV 663
L P + + + + + + C
Sbjct: 125 LTVMAK----------------PTNWIEGTQAVLRAK------KGQDDKVLVATCT-SAN 161
Query: 664 GDPTMRFEWFVNGVELKMGSRFHVQHDFGYV--TLDITKCVPADSGVYMCKAINRAGEAV 721
G P W + V + A C
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221
Query: 722 SSTSLKVKSKSDIVSESLQPDA 743
S +L V+ + ++ E +
Sbjct: 222 ESLTLNVQYEPEVTIEGFDGNW 243
Score = 53.2 bits (127), Expect = 1e-07
Identities = 29/247 (11%), Positives = 48/247 (19%), Gaps = 56/247 (22%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNT--MKVEWFHNN-----------------V 224
+ G C + +V W + V
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 225 PIKSGSRFTETNN-FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG-NLLVHSKKSIQ 282
R F + + + ED GVY C S NL V +K +
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 283 TETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPV 342
E +R +++
Sbjct: 135 IEGT--------------------------------QAVLRAKKGQDDKVLVATCT-SAN 161
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA--LNFKYTYPEDSGTYTCRAVNELGEAV 400
G V+W + + V + + C +
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221
Query: 401 TSSTLFV 407
S TL V
Sbjct: 222 ESLTLNV 228
Score = 50.1 bits (119), Expect = 1e-06
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 14/90 (15%)
Query: 56 PKSIENLRERGHAHFECKLEPVTDSN---LKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+R CK D+N + W + G + L
Sbjct: 238 GFDGNWYLQRMDVKLTCK----ADANPPATEYHWTTLNGSLPKGVEAQNRT------LFF 287
Query: 113 IDTI-PEDSGTYTCRAVNLVGFAEVQATLQ 141
I +GTY C A N +G Q +
Sbjct: 288 KGPINYSLAGTYICEATNPIGTRSGQVEVN 317
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 70.5 bits (172), Expect = 6e-14
Identities = 33/231 (14%), Positives = 59/231 (25%), Gaps = 59/231 (25%)
Query: 194 EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG--SRFTETNNFGFVA--------- 242
++ E +P+ W+ N +RF +N F
Sbjct: 10 QVAEDNNVLLLVHNLPL--ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 243 -----LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
L +D GVYT +
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTD----------------------------------- 92
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
E R + ++ + + V E + D + WL N
Sbjct: 93 ENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL---SNDIGANIQWLFNSQS 149
Query: 358 IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFV 407
+Q + R++ + L ED+G Y C N + ++S L +
Sbjct: 150 LQLTERMTLSQNNSI--LRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 68.5 bits (167), Expect = 3e-13
Identities = 31/230 (13%), Positives = 54/230 (23%), Gaps = 59/230 (25%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED----SSRITTKHDFGYVA-------- 563
V E N +P+ W++ D + +F A
Sbjct: 11 VAEDNNVLLLVHNLPL--ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY 68
Query: 564 ----MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELE 619
+ + +D G+Y T+ ++
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDENYRRTQ----------------------ATVRFHV 106
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL 679
P + + E S C D +W N L
Sbjct: 107 HQPVTQPFLQVTN-------------TTVKELDSVTLTCLS---NDIGANIQWLFNSQSL 150
Query: 680 KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKV 728
++ R + + L I D+G Y C+ N S S L +
Sbjct: 151 QLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 59.3 bits (143), Expect = 5e-10
Identities = 28/223 (12%), Positives = 50/223 (22%), Gaps = 59/223 (26%)
Query: 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV------------ 108
+ E + P+ W+K R + +
Sbjct: 10 QVAEDNNVLLLVHNLPLALGA--FAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 109 ----ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYL 164
+L +D G YT +
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENY-------------------------------- 95
Query: 165 EDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV 224
+ + + N +KE C +D ++W N+
Sbjct: 96 ----RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL---SNDIGANIQWLFNSQ 148
Query: 225 PIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267
++ R T + N L I ED+G Y C N +
Sbjct: 149 SLQLTERMTLSQNNSI--LRIDPIKREDAGEYQCEISNPVSVR 189
Score = 58.5 bits (141), Expect = 8e-10
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 491 KRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS 550
+ V + + + N V+E + +C D ++W N + L+ +
Sbjct: 98 TQATVRFHVHQPVTQPFLQVTNT-TVKELDSVTLTCL---SNDIGANIQWLFNSQSLQLT 153
Query: 551 SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588
R+T + + + ++ ED G Y C+ +N +
Sbjct: 154 ERMTLSQNNSI--LRIDPIKREDAGEYQCEISNPVSVR 189
Score = 48.9 bits (116), Expect = 1e-06
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDS 120
++E C D ++W N + + + R + L I ED+
Sbjct: 121 TVKELDSVTLTCL---SNDIGANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKREDA 175
Query: 121 GTYTCRAVNLVGFAEVQ 137
G Y C N V
Sbjct: 176 GEYQCEISNPVSVRRSN 192
Score = 37.0 bits (85), Expect = 0.013
Identities = 10/94 (10%), Positives = 20/94 (21%), Gaps = 18/94 (19%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV------------ 694
++ E + +P+ F W+ +
Sbjct: 10 QVAEDNNVLLLVHNLPL--ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 695 ----TLDITKCVPADSGVYMCKAINRAGEAVSST 724
+L D GVY + +T
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQAT 101
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 71.6 bits (175), Expect = 8e-14
Identities = 45/330 (13%), Positives = 79/330 (23%), Gaps = 105/330 (31%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
+V + + F A + E + TC + E T+
Sbjct: 37 QVHLALGDQRLNPTVT-YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV-- 93
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
T P L E+ EG
Sbjct: 94 ------------------------------------TIYSFPAPNVILTKPEVSEGTEVT 117
Query: 203 FECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG-VYTCRAV 261
+C P + + N VP + + +++ PED+G ++C A
Sbjct: 118 VKCEAHP------RAKVTLNGVPAQPLGPRAQL---------LLKATPEDNGRSFSCSAT 162
Query: 262 NALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321
+ + + E V P +
Sbjct: 163 LEVAGQLIH---------------------------------KNQTRELRVLYGPRLDER 189
Query: 322 M--RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKY 379
+ EN + G+ ++ L++G T+
Sbjct: 190 DCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIGESVTVT----------- 236
Query: 380 TYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ GTY CRA + GE T+ V S
Sbjct: 237 --RDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 64.7 bits (157), Expect = 1e-11
Identities = 39/261 (14%), Positives = 74/261 (28%), Gaps = 41/261 (15%)
Query: 345 SKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY-PEDSGTYTCRAVNELGEAVTSS 403
S+ +V + + V+ +D + T E + TC + T
Sbjct: 34 SEAQVHLALGDQRLNPT--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ 91
Query: 404 TLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVT--QQPSFTVQLNGPTEL 461
T+ + S + + E EV V P V LNG
Sbjct: 92 TVTIYSFPAPNVILTKPEVS---------------EGTEVTVKCEAHPRAKVTLNGVPAQ 136
Query: 462 VEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQ-----RPVFTKPLQNIDA- 515
G + P+ + T + N T++ P + +
Sbjct: 137 PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT 196
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
E C+ G+P +++ ++ T V + EG
Sbjct: 197 WPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIGESVT-------------VTRDLEG 241
Query: 576 IYICKATNALGEAVTTASMKI 596
Y+C+A + GE ++ +
Sbjct: 242 TYLCRARSTQGEVTREVTVNV 262
Score = 62.8 bits (152), Expect = 6e-11
Identities = 28/216 (12%), Positives = 51/216 (23%), Gaps = 62/216 (28%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V EG C P + + + + + L ++
Sbjct: 110 VSEGTEVTVKCEAHP--RAKVTLNGVPAQPLGPRAQLL------------LKATPEDNGR 155
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
+ C AT + + + +L + P P
Sbjct: 156 SFSCSATLEVAGQLIHKNQTR------ELRVLYG-----------PRLDERDCPGNW--- 195
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG-VELKMGSRFHVQHDFGYV 694
E C+ G+P + +G L +G V
Sbjct: 196 -----------TWPENSQQTPMCQAW--GNPLPELKCLKDGTFPLPIGESVTVT------ 236
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
G Y+C+A + GE ++ V S
Sbjct: 237 --------RDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 55.8 bits (134), Expect = 1e-08
Identities = 32/244 (13%), Positives = 65/244 (26%), Gaps = 70/244 (28%)
Query: 40 ENAKKKKNFIYYTVTKPKSIE---NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG 96
++ + + Y+ P I + E +C+ P + + NG P
Sbjct: 85 QSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHP------RAKVTLNGVPAQPL 138
Query: 97 HRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNET 156
L + T ++ +++C A V + +N+T
Sbjct: 139 G--------PRAQLLLKATPEDNGRSFSCSATLEVAGQLI---------------HKNQT 175
Query: 157 GLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLK--NCEIKEGQRAHFECRLIPVSDNT 214
++ Y P N E + C+ N
Sbjct: 176 RELRVLY-------------------GPRLDERDCPGNWTWPENSQQTPMCQ---AWGNP 213
Query: 215 M-KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNL 273
+ +++ + G+ V + G Y CRA + G+ +
Sbjct: 214 LPELKCLKD------GTFPLPIGESVTVT-------RDLEGTYLCRARSTQGEVTREVTV 260
Query: 274 LVHS 277
V S
Sbjct: 261 NVLS 264
Score = 46.6 bits (110), Expect = 1e-05
Identities = 29/218 (13%), Positives = 55/218 (25%), Gaps = 57/218 (26%)
Query: 194 EIKEGQRAHFECRL---IPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLP 250
++ + C L PVS+ V + + ++F A +
Sbjct: 14 VLEVDTQGTVVCSLDGLFPVSEAQ--VHLALGDQRLNPTVT-YGNDSFSAKASVSVTAED 70
Query: 251 EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIED 310
E + TC + T + ++S
Sbjct: 71 EGTQRLTCAVILGNQSQETLQTVTIYS--------------------------------- 97
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
P + V+E + P + NGVP Q +
Sbjct: 98 ----FPAPNVILTKPEVSEGTEVTVKCEAHP------RAKVTLNGVPAQPLGPRAQ---- 143
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L K T ++ +++C A E+ + E
Sbjct: 144 ----LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177
Score = 45.0 bits (106), Expect = 4e-05
Identities = 30/217 (13%), Positives = 53/217 (24%), Gaps = 57/217 (26%)
Query: 516 VEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
+E C L + +V ++ L + +T +D + A V AEDE
Sbjct: 15 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTYGND-SFSAKASVSVTAEDE 71
Query: 575 G--IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
G C T ++ I + + P
Sbjct: 72 GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKP----------------------- 108
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
E+ EG C P R + +NGV +
Sbjct: 109 --------------EVSEGTEVTVKCEAHP------RAKVTLNGVPAQPLG--------P 140
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L + + + C A + + +
Sbjct: 141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 66.9 bits (163), Expect = 2e-13
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 513 IDAVEEGKNAHFSCRLIPV-GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH--- 568
+ H C V G P + W N L ++S I T+ + H
Sbjct: 6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65
Query: 569 ----VRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ G Y A N G+A +
Sbjct: 66 RLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
Score = 64.6 bits (157), Expect = 1e-12
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Query: 647 EIMEGQSAHYDCRVVPV-GDPTMRFEWFVNGVELKMGSRFHVQ-------HDFGYVTLDI 698
++ H+ C V G P W NG L S + + L +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 699 TKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
+ ++G Y A N G+A +S +
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFN 105
Score = 63.8 bits (155), Expect = 2e-12
Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 8/93 (8%)
Query: 194 EIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRF-------TETNNFGFVALDI 245
++ H C V + W N + S L +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
Q ++G YT A N GQA S
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
Score = 59.6 bits (144), Expect = 6e-11
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 325 IHVAENQAAHFEARLIPV-GDSKLKVTWLRNGVPIQASNRVSTM-------HDFGYVALN 376
+ + H V G + WL NG + ++ + T + L
Sbjct: 7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66
Query: 377 FKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
++G YT A N G+A S
Sbjct: 67 LNQPTHVNNGNYTLLAANPFGQASASIMAAF 97
Score = 57.3 bits (138), Expect = 4e-10
Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 8/96 (8%)
Query: 54 TKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRPI-------HDF 105
+ + L H C V + W NG +
Sbjct: 1 SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ L + ++G YT A N G A
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 68.0 bits (166), Expect = 2e-13
Identities = 34/226 (15%), Positives = 59/226 (26%), Gaps = 61/226 (26%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
Q P + + I +G+ C + + +WFHN + +
Sbjct: 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVS-STKWFHNGSLSEETNS---------- 51
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGR 301
+L+I+ EDSG Y C+
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQ--------------------------------------- 72
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS 361
+ + V + Q V E Q KV + ++G ++
Sbjct: 73 VNESEPVYLEVFSDWLLLQA-SAEVVMEGQPLFLRCH-GWRNWDVYKVIYYKDGEALKYW 130
Query: 362 NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
++ EDSGTY C + S L +
Sbjct: 131 YENHN--------ISITNATVEDSGTYYCTGKVWQLD-YESEPLNI 167
Score = 64.9 bits (158), Expect = 3e-12
Identities = 33/229 (14%), Positives = 58/229 (25%), Gaps = 62/229 (27%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
Q+P + + +G+N +C +WF N E+++
Sbjct: 3 QKPKVSLNPPWNR-IFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEETNSSLN------ 54
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + + ED G Y C+ +
Sbjct: 55 ----IVNAKFEDSGEYKCQHQQVNESE-------------------------PVYLEVFS 85
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
+ Q +MEGQ C + ++ +G LK
Sbjct: 86 DWLLLQASA---------------EVVMEGQPLFLRCHG-WRNWDVYKVIYYKDGEALKY 129
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
H + IT DSG Y C + S ++ V
Sbjct: 130 WYENH--------NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 54.5 bits (131), Expect = 1e-08
Identities = 30/197 (15%), Positives = 51/197 (25%), Gaps = 61/197 (30%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
C + + +WF NG + +L+I++ EDSG Y C+
Sbjct: 24 LTCNGNNFFEVS-STKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQ 72
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
+ V + + + QA
Sbjct: 73 VNESEPVYLEV----------------------------------FSDWLLLQAS----- 93
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
+ EGQ C + + KV ++ + +K + I
Sbjct: 94 --AEVVMEGQPLFLRCH-GWRNWDVYKVIYYKDGEALKYWYENHN--------ISITNAT 142
Query: 250 PEDSGVYTCRAVNALGQ 266
EDSG Y C
Sbjct: 143 VEDSGTYYCTGKVWQLD 159
Score = 38.7 bits (90), Expect = 0.003
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPAD 705
+ I +G++ C + + +WF NG + + +L+I D
Sbjct: 14 NRIFKGENVTLTCNGNNFFEVS-STKWFHNGSLSEETNS----------SLNIVNAKFED 62
Query: 706 SGVYMCKAINRAGEA-----VSSTSLKVKSKSDIVSE 737
SG Y C+ V S L +++ +++V E
Sbjct: 63 SGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVME 99
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 66.0 bits (161), Expect = 3e-13
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-----D 558
P + ++ V +G+ A +C+ G PT +EW++ + +E H
Sbjct: 10 PRIVEHPSDL-IVSKGEPATLNCK--AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 559 FGYVAMDLSHVRA--EDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQH 608
+ + H R DEG+Y+C A N LGEAV+ AS+++ A H
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA--HHHHHH 117
Score = 59.1 bits (143), Expect = 9e-11
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH--- 368
P + D+ V++ + A + G + W + G ++ H
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCK--AEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 369 ----DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKAS 412
++ + D G Y C A N LGEAV+ +L V + A
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112
Score = 57.5 bits (139), Expect = 2e-10
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-----GSR 684
++ P + + + +G+ A +C+ G PT EW+ G ++ S
Sbjct: 4 RQEDFPPRIVEHPSDLI-VSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 685 FHVQHDFGYVTLDI--TKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVS 736
+ L I + D GVY+C A N GEAVS SL+V + +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
Score = 52.1 bits (125), Expect = 2e-08
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKS-----GSRFT 233
P + + +G+ A C+ P +EW+ +++ S
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTP------TIEWYKGGERVETDKDDPRSHRM 62
Query: 234 ETNNFGFVALDIMQCL--PEDSGVYTCRAVNALGQAVT-SGNLLVHSKKSIQTETQH 287
+ L I+ D GVY C A N LG+AV+ +L V + H
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH--HHHH 117
Score = 41.3 bits (97), Expect = 1e-04
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 19/101 (18%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIH----- 103
V P + + + A CK E P +EW+K G V H
Sbjct: 13 VEHPSDLI-VSKGEPATLNCKAEGRPTP------TIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 104 --DFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE-VQATLQ 141
++ + D G Y C A N +G A A+L+
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE 106
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 69.1 bits (168), Expect = 5e-13
Identities = 33/249 (13%), Positives = 67/249 (26%), Gaps = 37/249 (14%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLI-PVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P T + V G++ C + +V+W ++ + S + + V
Sbjct: 6 PGLTVSSPQLR-VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 563 AMD--------------------LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGL 602
L V+ DEGIY C+ V +++
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124
Query: 603 QLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVP 662
+ + G ++ ++ + M +H + V
Sbjct: 125 PRDLRVRVG--DTTQMRCSIQSTEEKRVTKVNW-------------MFSSGSHTEEETVL 169
Query: 663 VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722
D MR F + + ++ + +D G+Y C E+
Sbjct: 170 SYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRK 229
Query: 723 STSLKVKSK 731
+ L V
Sbjct: 230 TIVLHVVQD 238
Score = 61.4 bits (148), Expect = 2e-10
Identities = 35/253 (13%), Positives = 70/253 (27%), Gaps = 46/253 (18%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFH---------------NNVPIK 227
P T S + G+ C + + +V+W +N+ +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 228 SGS-----RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQ 282
+G +L + D G+YTC V + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEP 125
Query: 283 TETQHGESLSRLQQLEQGRYQRTSIIEDTVSQ---APVFTQPMRDIHVAENQAAHFEARL 339
R R + + T + + + ++ + +H E
Sbjct: 126 ------------------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEET 167
Query: 340 IPVGDSKLKVTWLRNGVPIQASNRVSTMHDF--GYVALNFKYTYPEDSGTYTCRAVNELG 397
+ DS ++ ++ + NRV D ++ + D G YTC
Sbjct: 168 VLSYDSNMRSGKFQS--LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKL 225
Query: 398 EAVTSSTLFVESK 410
E+ + L V
Sbjct: 226 ESRKTIVLHVVQD 238
Score = 53.0 bits (126), Expect = 1e-07
Identities = 26/209 (12%), Positives = 60/209 (28%), Gaps = 21/209 (10%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGH-----RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ D++ V ++ + V G +L + D D G YTC
Sbjct: 43 LFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCE 102
Query: 127 AVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186
++ ++ L + + + G+ + +
Sbjct: 103 IRLKNESMVMKKPVE----------------LWVLPEEPRDLRVRVGDTTQMRCSIQSTE 146
Query: 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIM 246
+ +H E + D+ M+ F + ++ T + ++ +
Sbjct: 147 EKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQ 206
Query: 247 QCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
D G+YTC ++ + L V
Sbjct: 207 TVKESDQGIYTCSIYVGKLESRKTIVLHV 235
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 67.2 bits (164), Expect = 5e-13
Identities = 28/225 (12%), Positives = 60/225 (26%), Gaps = 68/225 (30%)
Query: 198 GQRAHFECRLIPVSDNTMKVEWFH------------NNVPIKSGSRFTETNNFGFVALDI 245
GQ + + +SD+ ++W K + N L I
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKI 70
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRT 305
+D +Y + G+ V +
Sbjct: 71 KHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK----------------------------- 101
Query: 306 SIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS 365
I++ VS+ P + + + E + + ++ ++G ++ S RV
Sbjct: 102 --IQERVSK-PKISWTCINTTL------TCEV----MNGTDPELNLYQDGKHLKLSQRVI 148
Query: 366 TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
T S + C A N++ + + + K
Sbjct: 149 THK-----------WTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 66.4 bits (162), Expect = 9e-13
Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 68/225 (30%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFR------------NEKPLEDSSRITTKHDFGYVAMDL 566
G++ + + D ++W + ++ ++ + + +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKI 70
Query: 567 SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMP 626
H++ +D+ IY + G+ V ++ E+ + P
Sbjct: 71 KHLKTDDQDIYKVSIYDTKGKNVLEKIF-------------------DLKIQERVSKP-- 109
Query: 627 QEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH 686
+ C V+ DP + + +G LK+ R
Sbjct: 110 -------------------KISWTCINTTLTCEVMNGTDPELN--LYQDGKHLKLSQR-- 146
Query: 687 VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ K + S + C A N+ + S + K
Sbjct: 147 ---------VITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 53.7 bits (129), Expect = 2e-08
Identities = 22/215 (10%), Positives = 49/215 (22%), Gaps = 63/215 (29%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRP---------IHDFGYVALDIIDTIPE 118
+ + ++D ++W K I + F L I +
Sbjct: 17 INLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTD 76
Query: 119 DSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEE 178
D Y + G ++ ++ E SK
Sbjct: 77 DQDIYKVSIYDTKGKNVLEKIFD-------------------LKIQERVSK--------- 108
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
P + C ++ +D + + + +K R
Sbjct: 109 -----PKISW--------TCINTTLTCEVMNGTDPE--LNLYQDGKHLKLSQRVI----- 148
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNL 273
+ S + C A N + + + +
Sbjct: 149 ------THKWTTSLSAKFKCTAGNKVSKESSVEPV 177
Score = 48.7 bits (116), Expect = 1e-06
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 13/82 (15%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577
N +C + + ++ +++ K L+ S R+ +
Sbjct: 114 TCINTTLTCEV--MNGTDPELNLYQDGKHLKLSQRVI-----------THKWTTSLSAKF 160
Query: 578 ICKATNALGEAVTTASMKIKTK 599
C A N + + + + K
Sbjct: 161 KCTAGNKVSKESSVEPVSCPEK 182
Score = 45.6 bits (108), Expect = 1e-05
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 16/94 (17%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
I V+KPK + C++ TD L +++G+ + + R
Sbjct: 102 IQERVSKPKIS---WTCINTTLTCEVMNGTDPELN--LYQDGKHLKLSQR---------- 146
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
+ S + C A N V + C
Sbjct: 147 -VITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 43.3 bits (102), Expect = 8e-05
Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 15/97 (15%)
Query: 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNG------------VPIQASNRVSTMHDFG 371
+ A Q + + + D + W + + + +
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG- 66
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L K+ +D Y + G+ V ++
Sbjct: 67 --TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK 101
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 69.0 bits (169), Expect = 2e-12
Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 10/127 (7%)
Query: 607 QHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP 666
PE ++ + + P +P + + EG + + CR GDP
Sbjct: 358 ATPEFVQGKEFKDFPDVLLPNYFTC--RRARIRDRKAQQVFVDEGHTVQFVCRAD--GDP 413
Query: 667 TMRFEWFV-NG--VELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723
W V K R V D G TL++ D+G Y+C A N G
Sbjct: 414 PPAILWLSPRKHLVSAKSNGRLTVFPD-G--TLEVRYAQVQDNGTYLCIAANAGGNDSMP 470
Query: 724 TSLKVKS 730
L V+S
Sbjct: 471 AHLHVRS 477
Score = 58.2 bits (141), Expect = 5e-09
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN---VPIKSGSRFTETNNF 238
+A I + + EG F CR D + W V KS R T +
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRA--DGDPPPAILWLSPRKHLVSAKSNGRLTVFPD- 440
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
G L++ +D+G Y C A NA G +L V S
Sbjct: 441 GT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 57.0 bits (138), Expect = 1e-08
Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 18/132 (13%)
Query: 473 QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG 532
P+ + + ++ +D P ++ + + Q + V+EG F CR G
Sbjct: 358 ATPEFV-QGKEFKDFPDVLLPN--YFTCRRARIRDRKAQQVF-VDEGHTVQFVCRA--DG 411
Query: 533 DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAM------DLSHVRAEDEGIYICKATNALG 586
DP + W + + G + + ++ + + +D G Y+C A NA G
Sbjct: 412 DPPPAILWLS------PRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGG 465
Query: 587 EAVTTASMKIKT 598
A + +++
Sbjct: 466 NDSMPAHLHVRS 477
Score = 53.6 bits (129), Expect = 2e-07
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NG--VPIQASNRVSTMHD 369
+A + + + + V E F R GD + WL V +++ R++ D
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRA--DGDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
G L +Y +D+GTY C A N G + L V S
Sbjct: 441 -GT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 47.8 bits (114), Expect = 1e-05
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFR-PIHDFGYVAL 110
+ + E F C+ + D + W V+ R + G L
Sbjct: 388 RDRKAQQVFVDEGHTVQFVCRAD--GDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT--L 443
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
++ +D+GTY C A N G + A L
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 62.6 bits (152), Expect = 5e-12
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 12/105 (11%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSS----RITTKHD 558
P+ + G+ C + P ++ W E LE + + T
Sbjct: 15 PIISSTQTQH--ALHGEKGQIKCFI--RSTPPPDRIAWSWKENVLESGTSGRYTVETIST 70
Query: 559 FGYVAMDL--SHVRAEDEG-IYICKATNALGEAVTTASMKIKTKA 600
V L S++ D IY C A N+ G +K +
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
Score = 58.0 bits (140), Expect = 2e-10
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 12/111 (10%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMGS--RFHVQ---- 688
PI + T T + G+ C + P R W L+ G+ R+ V+
Sbjct: 15 PIISS--TQTQHALHGEKGQIKCFIR--STPPPDRIAWSWKENVLESGTSGRYTVETIST 70
Query: 689 HDFGYVTLDITKCVPAD-SGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
+ TL I+ V AD +Y C A N G LK + S
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSS 121
Score = 57.2 bits (138), Expect = 4e-10
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVTWLRNGVPIQASN----RVS 365
TV+ P+ + + H + + + ++ W +++ V
Sbjct: 10 TVNGPPIISST-QTQHALHGEKGQIKCFI--RSTPPPDRIAWSWKENVLESGTSGRYTVE 66
Query: 366 TMHDFGYVA--LNFKYTYPEDSGT-YTCRAVNELGEAVTSSTLFVESKA 411
T+ V L D T Y C A N G L +
Sbjct: 67 TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
Score = 55.3 bits (133), Expect = 2e-09
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHNNVPIKSGS--RFT---E 234
P +S + G++ +C + ++ W ++SG+ R+T
Sbjct: 12 NGPPIISSTQTQHALHGEKGQIKCF---IRSTPPPDRIAWSWKENVLESGTSGRYTVETI 68
Query: 235 TNNFGFVA-LDIMQCLPED-SGVYTCRAVNALGQAVTSGNLLVHSKKSIQTET 285
+ G ++ L I + D +Y C A N+ G L + +
Sbjct: 69 STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSS 121
Score = 49.1 bits (117), Expect = 3e-07
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 13/104 (12%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFR------PIH 103
++ ++ +C + P D ++ W + G R
Sbjct: 16 IISSTQTQH-ALHGEKGQIKCFIRSTPPPD---RIAWSWKENVLESGTSGRYTVETISTE 71
Query: 104 DFGYVALDIIDTIPEDSGT-YTCRAVNLVGFAEVQATLQCRGSA 146
+ L I + + D T Y C A N G L+ +GS
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 63.0 bits (153), Expect = 1e-11
Identities = 32/224 (14%), Positives = 57/224 (25%), Gaps = 68/224 (30%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V E + C+ + +WF NE + + + D G
Sbjct: 19 VLEKDSVTLKCQGAYSPEDN-STQWFHNESLISSQASSYF----------IDAATVNDSG 67
Query: 576 IYICKATNALG-EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634
Y C+ + + V LE + Q P +
Sbjct: 68 EYRCQTNLSTLSDPVQ-------------LEVHIG-------------WLLLQAPRWVF- 100
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
E H C + + NG + K
Sbjct: 101 --------------KEEDPIHLRCHS-WKNTALHKVTYLQNGKDRKYFHHNS-------- 137
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
I K DSG Y C+ + + VSS ++ + ++++
Sbjct: 138 DFHIPKATLKDSGSYFCRGLVGSKN-VSSETVNI-----TITQA 175
Score = 61.4 bits (149), Expect = 4e-11
Identities = 40/224 (17%), Positives = 66/224 (29%), Gaps = 61/224 (27%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ + + E +C+ ++ +WFHN I S + +
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDN-STQWFHNESLISSQAS----------SY 56
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
I DSG Y C+ + +LS QLE
Sbjct: 57 FIDAATVNDSGEYRCQTNLS--------------------------TLSDPVQLE----- 85
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
V + Q R E H + KVT+L+NG + +
Sbjct: 86 --------VHIGWLLLQAPRW-VFKEEDPIHLRCH-SWKNTALHKVTYLQNGKDRKYFHH 135
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
S + +DSG+Y CR + V+S T+ +
Sbjct: 136 NSD--------FHIPKATLKDSGSYFCRGLVGSKN-VSSETVNI 170
Score = 48.7 bits (116), Expect = 9e-07
Identities = 28/196 (14%), Positives = 47/196 (23%), Gaps = 61/196 (31%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
+C+ + +WF N ++ + I DSG Y C+
Sbjct: 27 LKCQGAYSP-EDNSTQWFHNESLISSQAS----------SYFIDAATVNDSGEYRCQTNL 75
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
V L+ +L + +
Sbjct: 76 STLSDPV--QLEVHIGWLLLQAPRWV---------------------------------- 99
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
KE H C + KV + N K ++ I +
Sbjct: 100 -----FKEEDPIHLRCH-SWKNTALHKVTYLQNGKDRKYFHHNSD--------FHIPKAT 145
Query: 250 PEDSGVYTCRAVNALG 265
+DSG Y CR +
Sbjct: 146 LKDSGSYFCRGLVGSK 161
Score = 37.9 bits (88), Expect = 0.004
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 13/93 (13%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPAD 705
++E S C+ + +WF N + + + I D
Sbjct: 17 YSVLEKDSVTLKCQGAYSPEDN-STQWFHNESLISSQAS----------SYFIDAATVND 65
Query: 706 SGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
SG Y C+ L+V ++
Sbjct: 66 SGEYRCQTNL--STLSDPVQLEVHIGWLLLQAP 96
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 62.7 bits (152), Expect = 2e-11
Identities = 23/218 (10%), Positives = 54/218 (24%), Gaps = 60/218 (27%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD-------LSHVR 570
G + + + D +V W R + + R + ++
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 571 AEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPE 630
+D G Y + G + ++ ++ +
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVS--------------------------- 102
Query: 631 RQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD 690
KP+ E +A C V+ D ++ + L+ +
Sbjct: 103 ----KPMIY---------WECSNATLTCEVLEGTDVELK--LYQGKEHLRSLRQ------ 141
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
++ + CKA+NR + +
Sbjct: 142 -----KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 59.2 bits (143), Expect = 3e-10
Identities = 22/219 (10%), Positives = 54/219 (24%), Gaps = 66/219 (30%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPI----------KSGSRFTETNNFGFVALDIM 246
G + ++D+ +V W + + F N L I
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIK 66
Query: 247 QCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTS 306
+DSG Y + G + + L + + +
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSK----------------------- 103
Query: 307 IIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVST 366
P+ E A + + + +++ + +++ +
Sbjct: 104 ---------PMIY--------WECSNATLTCEV--LEGTDVELKLYQGKEHLRSLRQ--- 141
Query: 367 MHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
Y + + C+AVN + + +
Sbjct: 142 --------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172
Score = 51.5 bits (123), Expect = 1e-07
Identities = 30/212 (14%), Positives = 56/212 (26%), Gaps = 61/212 (28%)
Query: 66 GHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV-------ALDIIDTIPE 118
+ +TD +V W + V R L I + +
Sbjct: 12 HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD 71
Query: 119 DSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEE 178
DSGTY + G + L ++ LE SK
Sbjct: 72 DSGTYNVTVYSTNGTRILNKAL-------------------DLRILEMVSK--------- 103
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
P+ N A C + + ++++ + ++S + T + +
Sbjct: 104 -----PMIYWECSN--------ATLTCEV--LEGTDVELKLYQGKEHLRSLRQKTMSYQW 148
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTS 270
+ C+AVN + Q
Sbjct: 149 T-----------NLRAPFKCKAVNRVSQESEM 169
Score = 47.6 bits (113), Expect = 3e-06
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 7/97 (7%)
Query: 325 IHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV-------ALNF 377
+ A + + D +V W R + R L
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 378 KYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQ 414
K +DSGTY + G + + L + +
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS 102
Score = 44.2 bits (104), Expect = 3e-05
Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 13/93 (13%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL----------KMGSRFHVQHDFGYVTLDI 698
G + + + D W + F + + L I
Sbjct: 9 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKI 65
Query: 699 TKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
DSG Y + G + + +L ++
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL 98
Score = 41.1 bits (96), Expect = 4e-04
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
I V+KP A C++ TD LK ++ + +
Sbjct: 97 ILEMVSKPMIYWECSN---ATLTCEVLEGTDVELK--LYQGKEHLRSLRQ---------- 141
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
+ + C+AVN V + C
Sbjct: 142 -KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 62.2 bits (150), Expect = 3e-11
Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 35/191 (18%)
Query: 79 DSNLKVEWFKNGRPVTIGH-RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ 137
DS+ ++W KNG+ + H + + DF V EDSG Y C +
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYYVCYTPA----SNKN 70
Query: 138 ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197
L + G + + + + + ++ +Q ++ +
Sbjct: 71 TYLYLKARVGSADDAKKDAAKKDD---------AKKDDAKKDGSQTNKAKNLVQVDGSRG 121
Query: 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
C ++W + I + T N G A D G Y
Sbjct: 122 DGSVLLTC-----GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD-------PRGTYQ 169
Query: 258 CRAVNALGQAV 268
C+ +
Sbjct: 170 CQGAKETSNPL 180
Score = 60.7 bits (146), Expect = 1e-10
Identities = 28/204 (13%), Positives = 54/204 (26%), Gaps = 38/204 (18%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIY 577
G + +C L D ++W +N + L + DF ED G Y
Sbjct: 14 GTSVELTCPL----DSDENLKWEKNGQELPQKHDKHLVLQDFS---------EVEDSGYY 60
Query: 578 ICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPI 637
+C + + +K + G + + K + + Q + + +
Sbjct: 61 VCYTPASNKNT----YLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQV 116
Query: 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLD 697
S C G +W +G + + + G D
Sbjct: 117 DG--------SRGDGSVLLTC-----GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD 163
Query: 698 ITKCVPADSGVYMCKAINRAGEAV 721
G Y C+ +
Sbjct: 164 -------PRGTYQCQGAKETSNPL 180
Score = 59.5 bits (143), Expect = 2e-10
Identities = 31/205 (15%), Positives = 60/205 (29%), Gaps = 40/205 (19%)
Query: 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG-SRFTETNNFGFVALDIMQCLPEDSGVY 256
G C L D+ ++W N + + +F V EDSG Y
Sbjct: 14 GTSVELTCPL----DSDENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYY 60
Query: 257 TCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAP 316
C + V S + + + + + G
Sbjct: 61 VCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDG---------------- 104
Query: 317 VFTQPMRDIHVAENQAAHFEARLI-PVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
+Q + ++ + + + ++ G + + WL++G I N + G A
Sbjct: 105 --SQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAK 162
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAV 400
+ GTY C+ E +
Sbjct: 163 -------DPRGTYQCQGAKETSNPL 180
Score = 41.8 bits (97), Expect = 3e-04
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Query: 344 DSKLKVTWLRNGVPIQASNRVS-TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
DS + W +NG + + + DF V EDSG Y C +
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYYVCYTPASNK----N 70
Query: 403 STLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQP 449
+ L+++++ D + +AA + +D + + + + Q
Sbjct: 71 TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD 117
Score = 38.3 bits (88), Expect = 0.004
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDII 113
++ R G C ++ ++W K+G ++ + + ++
Sbjct: 111 KNLVQVDGSRGDGSVLLTCG-----LTDKTIKWLKDGSIISPLNATKNT-------WNLG 158
Query: 114 DTIPEDSGTYTCRAVN 129
+ + GTY C+
Sbjct: 159 NNAKDPRGTYQCQGAK 174
Score = 37.9 bits (87), Expect = 0.006
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
K L +D + +C G ++W ++ + + + G A
Sbjct: 107 TNKAKNLVQVDGSRGDGSVLLTC-----GLTDKTIKWLKDGSIISPLNATKNTWNLGNNA 161
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTT 591
D G Y C+ +
Sbjct: 162 KD-------PRGTYQCQGAKETSNPLQV 182
Score = 34.8 bits (79), Expect = 0.050
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 16/122 (13%)
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH-VQHDFGYVTLDITKCVPADSGVY 709
G S C + D +W NG EL H V DF V DSG Y
Sbjct: 14 GTSVELTCPL----DSDENLKWEKNGQELPQKHDKHLVLQDFSEVE---------DSGYY 60
Query: 710 MCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKE--AEMNKPDAWKKIQLKE 767
+C +V S D ++ + D KK K+ ++ NK ++
Sbjct: 61 VCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSR 120
Query: 768 AE 769
+
Sbjct: 121 GD 122
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 57.9 bits (140), Expect = 1e-10
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ T Q +V G + F C P + W R + ++ ++
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRL-----HNGKLPSRAMDFNGI 63
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + +V+ D G Y+C +N TA++ ++
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 56.4 bits (136), Expect = 5e-10
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 8/100 (8%)
Query: 311 TVSQAPVFT--QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
P+ + R V F + W R S +
Sbjct: 4 AAPSKPIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNG 62
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L + P D+GTY C N ++TL V+
Sbjct: 63 -----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 55.2 bits (133), Expect = 1e-09
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 626 PQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF 685
P +P + T + + G + C P W + SR
Sbjct: 6 PSKP------IMVTVEEQRSQSVRPGADVTFICTAKS-KSPAYTLVWTRLHNGK-LPSRA 57
Query: 686 HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ L I P+D+G Y+C N + +L V+
Sbjct: 58 MDFNG----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 52.5 bits (126), Expect = 1e-08
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 10/101 (9%)
Query: 179 TTTQAPIFTT--SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF-HNNVPIKSGSRFTET 235
PI T ++ ++ G F C + W +N + S +
Sbjct: 4 AAPSKPIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNG 62
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L I P D+G Y C N + L V
Sbjct: 63 I------LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 48.7 bits (116), Expect = 2e-07
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE---PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
TV + +S +R F C + P + W +
Sbjct: 13 TVEEQRSQS-VRPGADVTFICTAKSKSPAY----TLVWTRLHNGKLPSRAMDFNG----- 62
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I + P D+GTY C N+ + ATL
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 58.2 bits (140), Expect = 2e-10
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS--------RFHVQHDFGYVTLDI 698
E+ G+ +C + + F W + + + + TL I
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 78
Query: 699 TKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+D G+Y C A + +ST ++V K
Sbjct: 79 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 54.4 bits (130), Expect = 4e-09
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE--------T 235
+ + E+ G++ C + + W + + +
Sbjct: 9 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 68
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
L I D G+YTC A + L S + VH K + +
Sbjct: 69 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGM 120
Score = 50.5 bits (120), Expect = 1e-07
Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 9/114 (7%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-------- 554
V P I+ + G+ +C + + W + +
Sbjct: 8 YDVVLSPSHGIE-LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 555 TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQH 608
++ + + V D+G+Y C A++ L + +++ K + +
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGM 120
Score = 49.7 bits (118), Expect = 2e-07
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 8/113 (7%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS--------TM 367
V P I ++ + + + W Q V+ +
Sbjct: 9 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 68
Query: 368 HDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNE 420
L D G YTC A + L S+ + V K + + E
Sbjct: 69 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGME 121
Score = 44.7 bits (105), Expect = 1e-05
Identities = 16/118 (13%), Positives = 26/118 (22%), Gaps = 8/118 (6%)
Query: 47 NFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR------ 100
IY V P L C + + W
Sbjct: 5 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 64
Query: 101 --PIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNET 156
L I D G YTC A + + + ++ + + E+
Sbjct: 65 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 122
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 57.8 bits (139), Expect = 2e-10
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH---DFG 560
P T + G + F+C D + W + + L+D+ H G
Sbjct: 11 PQITVQPETQS-AIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 561 YVAMD-----LSHVRAEDEGIYICKATNALGEAVTT 591
+ L +V EG Y C +N G + +
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 50.5 bits (120), Expect = 7e-08
Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 9/99 (9%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS---RFHVQH 689
+ P T S + G + C D M F W + L+ H++
Sbjct: 8 FPXPQITVQPETQS-AIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 690 DFGYV-----TLDITKCVPADSGVYMCKAINRAGEAVSS 723
G + L + G Y C N G + S
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 48.9 bits (116), Expect = 3e-07
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 9/102 (8%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI-----KSGSRFTETNNF 238
P T + G F C SD+ M W +N + ++ +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 239 GFVA---LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLL-VH 276
L + G Y C N G + + L ++
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 45.8 bits (108), Expect = 3e-06
Identities = 15/99 (15%), Positives = 23/99 (23%), Gaps = 8/99 (8%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
P T F DS + W + +Q + + H
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 372 YVALNFKYTY--------PEDSGTYTCRAVNELGEAVTS 402
+YT G Y C N G + +
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 37.4 bits (86), Expect = 0.002
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 53 VTKPKSIENLRERGH-AHFECKLEPVTDSNLKVEWFKNGRPV---TIGHRFRPIHDFGYV 108
+P++ G F C +DS + W + + + + G +
Sbjct: 14 TVQPETQ--SAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGEL 71
Query: 109 -----ALDIIDTIPEDSGTYTCRAVNLVGFA 134
L + + G Y C N G +
Sbjct: 72 MEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 59.1 bits (143), Expect = 4e-10
Identities = 38/228 (16%), Positives = 64/228 (28%), Gaps = 61/228 (26%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+ + + E +C+ ++ +WFHN I S +
Sbjct: 4 DLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQ-STQWFHNESLISSQAS-------- 54
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
+ I +DSG Y C+ + +LS QL
Sbjct: 55 --SYFIDAATVDDSGEYRCQTQLS--------------------------TLSDPVQL-- 84
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359
V + Q E H + KVT+L+NG +
Sbjct: 85 -----------EVHIGWLLLQA-PRWVFKEEDPIHLRCH-SWKNTALHKVTYLQNGKGRK 131
Query: 360 ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ S +DSG+Y CR + V+S T+ +
Sbjct: 132 YFHHNSD--------FYIPKATLKDSGSYFCRGLVGSKN-VSSETVQI 170
Score = 58.7 bits (142), Expect = 6e-10
Identities = 37/240 (15%), Positives = 61/240 (25%), Gaps = 63/240 (26%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V E + C+ + +WF NE + + + +D G
Sbjct: 19 VLEKDSVTLKCQGAYSPEDQ-STQWFHNESLISSQASSYF----------IDAATVDDSG 67
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C+ +T S + QLE + Q P +
Sbjct: 68 EYRCQTQL------STLSDPV------QLEVHIG-------------WLLLQAPRWVF-- 100
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
E H C + + NG K
Sbjct: 101 -------------KEEDPIHLRCHS-WKNTALHKVTYLQNGKGRKYFHHNS--------D 138
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDI--VSESLQPDAWKKIQLKEA 752
I K DSG Y C+ + + S T + + + +S P K + K+
Sbjct: 139 FYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTISSFFPPGYQGKKKKKKG 198
Score = 46.0 bits (109), Expect = 1e-05
Identities = 27/196 (13%), Positives = 44/196 (22%), Gaps = 61/196 (31%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
+C+ + +WF N ++ + I +DSG Y C+
Sbjct: 27 LKCQGAYSP-EDQSTQWFHNESLISSQAS----------SYFIDAATVDDSGEYRCQTQL 75
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
VQ +
Sbjct: 76 STLSDPVQLEVH-----------------------------------------IGWLLLQ 94
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
KE H C + KV + N K ++ I +
Sbjct: 95 APRWVFKEEDPIHLRCH-SWKNTALHKVTYLQNGKGRKYFHHNSD--------FYIPKAT 145
Query: 250 PEDSGVYTCRAVNALG 265
+DSG Y CR +
Sbjct: 146 LKDSGSYFCRGLVGSK 161
Score = 37.2 bits (86), Expect = 0.010
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 13/93 (13%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPAD 705
++E S C+ + +WF N + + + I D
Sbjct: 17 YRVLEKDSVTLKCQGAYSPEDQ-STQWFHNESLISSQAS----------SYFIDAATVDD 65
Query: 706 SGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
SG Y C+ L+V ++
Sbjct: 66 SGEYRCQTQL--STLSDPVQLEVHIGWLLLQAP 96
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 58.9 bits (142), Expect = 5e-10
Identities = 34/241 (14%), Positives = 68/241 (28%), Gaps = 58/241 (24%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGH------RFRPI 102
+ +TVT PK + + EC + ++E + R +
Sbjct: 1 MLFTVTAPKEVYTVDVGSSVSLECDFDR--RECTELEGIRASLQKVENDTSLQSERATLL 58
Query: 103 HDF---GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLE 159
+ G I DSG Y C + + T++
Sbjct: 59 EEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVK------------------ 100
Query: 160 QIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKV 217
+A + E+ C+ P +V
Sbjct: 101 ---------------------VKASYMRIDTRILEVPGTGEVQLTCQARGYP----LAEV 135
Query: 218 EWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
W + +VP + T + ++ ++ P+ S ++C NA + +TS + S
Sbjct: 136 SWQNVSVPANTSHIRTPEGLYQVTSVLRLK--PQPSRNFSCMFWNAHMKELTSAIIDPLS 193
Query: 278 K 278
+
Sbjct: 194 R 194
Score = 58.9 bits (142), Expect = 5e-10
Identities = 31/226 (13%), Positives = 55/226 (24%), Gaps = 55/226 (24%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED------SSRITTKHDF---GYVAMDL 566
V+ G + C ++E R + S R T + G +
Sbjct: 14 VDVGSSVSLECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHI 71
Query: 567 SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMP 626
V+ D G Y C ++K+K
Sbjct: 72 PSVQVRDSGQYRCLVICGAAWDYKYLTVKVK---------------------ASYMRIDT 110
Query: 627 QEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH 686
+ E C+ G P W V + H
Sbjct: 111 RILEVP-----------------GTGEVQLTCQA--RGYPLAEVSWQNVSVPA---NTSH 148
Query: 687 VQHDFG-YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
++ G Y + + P S + C N + ++S + S+
Sbjct: 149 IRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSR 194
Score = 52.0 bits (124), Expect = 1e-07
Identities = 33/227 (14%), Positives = 57/227 (25%), Gaps = 59/227 (25%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG---------SRFTETNNFGFVALDIMQ 247
G EC ++E ++ + E G I
Sbjct: 16 VGSSVSLECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73
Query: 248 CLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSI 307
DSG Y C + G
Sbjct: 74 VQVRDSGQYRCLVIC-------------------------------------GAAWDYKY 96
Query: 308 IEDTVSQAPVFTQPMRDIHVAENQAAHF--EARLIPVGDSKLKVTWLRNGVPIQASNRVS 365
+ V + + R + V +AR P +V+W VP S+ +
Sbjct: 97 LTVKVKASYMRIDT-RILEVPGTGEVQLTCQARGYP----LAEVSWQNVSVPANTSHIRT 151
Query: 366 TMHDFG-YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
+ L K P+ S ++C N + +TS+ + S+
Sbjct: 152 PEGLYQVTSVLRLK---PQPSRNFSCMFWNAHMKELTSAIIDPLSRM 195
Score = 47.3 bits (112), Expect = 4e-06
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
K + + + I V +C+ G P +V W P S T + +
Sbjct: 100 KVKASYMRIDTRILEVPGTGEVQLTCQA--RGYPLAEVSWQNVSVPANTSHIRTPEGLY- 156
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
V L ++ + + C NA + +T+A +
Sbjct: 157 QVTSVL-RLKPQPSRNFSCMFWNAHMKELTSAIIDP 191
Score = 43.1 bits (101), Expect = 1e-04
Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 11/103 (10%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG------SRFHVQHDF---GYVTLDIT 699
G S +C E ++ R + + G I
Sbjct: 15 DVGSSVSLECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 700 KCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPD 742
DSG Y C I A ++KVK+ + +
Sbjct: 73 SVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEV 115
Score = 37.3 bits (86), Expect = 0.010
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 11/103 (10%)
Query: 319 TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI------QASNRVSTMHDF-- 370
T P V + E ++ +R + S R + + +
Sbjct: 6 TAPKEVYTVDVGSSVSLECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQLP 63
Query: 371 -GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
G + DSG Y C + T+ V++
Sbjct: 64 LGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYM 106
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 61.3 bits (149), Expect = 6e-10
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGS---RFHVQH 689
P+ + + EG +A CR W NG + G+ R V
Sbjct: 340 YAPVIVEP-PADLNVTEGMAAELKCRA---STSLTSVSWITPNGTVMTHGAYKVRIAVLS 395
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
D G TL+ T D+G+Y C N G +S +L V
Sbjct: 396 D-G--TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 57.1 bits (138), Expect = 1e-08
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
PV +P +++ V EG A CR V W + +
Sbjct: 340 YAPVIVEPPADLN-VTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRI---A 392
Query: 562 VAMD----LSHVRAEDEGIYICKATNALGEAVTTASMKI 596
V D ++V +D G+Y C +N++G +A++ +
Sbjct: 393 VLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 55.9 bits (135), Expect = 3e-08
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVP 357
+GRY APV +P D++V E AA + R S V+W+ NG
Sbjct: 325 KGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTV 381
Query: 358 I---QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ R++ + D G LNF +D+G YTC N +G S+TL V
Sbjct: 382 MTHGAYKVRIAVLSD-GT--LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 54.4 bits (131), Expect = 9e-08
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 172 RGEYI-----EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVP 225
+G YI T AP+ + + EG A +CR S + V W N
Sbjct: 325 KGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTV 381
Query: 226 IKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ G+ L+ +D+G+YTC N++G S L V
Sbjct: 382 MTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 49.7 bits (119), Expect = 3e-06
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFRPIHDFGYVAL 110
+ +P + N+ E A +C+ + S V W NG +T G I L
Sbjct: 343 VIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ + +D+G YTC N VG ATL
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 60.5 bits (147), Expect = 1e-09
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGS---RFHVQH 689
P I EG+ A CR P +W + NG L S R V +
Sbjct: 351 SAPFIMDA-PRDLNISEGRMAELKCRT----PPMSSVKWLLPNGTVLSHASRHPRISVLN 405
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
D G TL+ + + +D+GVY C N AG + +S L V +
Sbjct: 406 D-G--TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 55.5 bits (134), Expect = 4e-08
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
AP + ++ I EG+ A +CR P V+W N G+ + + +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTPP----MSSVKWLLPN-----GTVLSHASRHPRI 401
Query: 242 A------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ L+ L D+GVYTC N G + S L V +
Sbjct: 402 SVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 55.1 bits (133), Expect = 5e-08
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWF----RNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571
+ EG+ A CR P V+W RI+ +D G ++ SHV
Sbjct: 364 ISEGRMAELKCR----TPPMSSVKWLLPNGTVLSHASRHPRISVLND-GT--LNFSHVLL 416
Query: 572 EDEGIYICKATNALGEAVTTASMKIKT 598
D G+Y C TN G + +A + + T
Sbjct: 417 SDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 50.1 bits (120), Expect = 2e-06
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVP 357
+GRY AP RD++++E + A + R V WL NG
Sbjct: 336 RGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCR----TPPMSSVKWLLPNGTV 391
Query: 358 IQ---ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ R+S ++D G LNF + D+G YTC N G + S+ L V + +
Sbjct: 392 LSHASRHPRISVLND-GT--LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
Score = 49.4 bits (118), Expect = 3e-06
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFR--PIHDFGYV 108
+ P+ + N+ E A +C+ P++ V+W NG ++ R + + G
Sbjct: 355 IMDAPRDL-NISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGT- 408
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L+ + D+G YTC N+ G + A L
Sbjct: 409 -LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 54.8 bits (131), Expect = 4e-09
Identities = 21/138 (15%), Positives = 34/138 (24%), Gaps = 34/138 (24%)
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL 679
S + P+ + P + T ++ G D + GDP W +
Sbjct: 5 HHHSSRQEPPKIHLDCP---GRIPDTIVVVAGNKLRLDVPIS--GDPAPTVIWQKAITQG 59
Query: 680 KMGS-----------------------------RFHVQHDFGYVTLDITKCVPADSGVYM 710
R V+ + D GVY
Sbjct: 60 NKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYT 119
Query: 711 CKAINRAGEAVSSTSLKV 728
N GE + ++KV
Sbjct: 120 VTVKNPVGEDQVNLTVKV 137
Score = 49.0 bits (116), Expect = 5e-07
Identities = 19/122 (15%), Positives = 30/122 (24%), Gaps = 32/122 (26%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKP----------------- 546
+ I V G + GDP V W +
Sbjct: 19 DCPGRIPDTI-VVVAGNKLRLDVPI--SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTG 75
Query: 547 ------------LEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594
E R+ + + EDEG+Y N +GE ++
Sbjct: 76 DSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 135
Query: 595 KI 596
K+
Sbjct: 136 KV 137
Score = 46.7 bits (110), Expect = 3e-06
Identities = 16/124 (12%), Positives = 25/124 (20%), Gaps = 33/124 (26%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWFHNNVPIKSGS---------- 230
+ G + + P+S D V W
Sbjct: 17 HLDCPGRIPDTIVVVAGNKLRLDV---PISGDPAPTVIWQKAITQGNKAPARPAPDAPED 73
Query: 231 -------------------RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271
R + ED GVYT N +G+ +
Sbjct: 74 TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 133
Query: 272 NLLV 275
+ V
Sbjct: 134 TVKV 137
Score = 46.7 bits (110), Expect = 3e-06
Identities = 19/124 (15%), Positives = 30/124 (24%), Gaps = 33/124 (26%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPV-GDSKLKVTWLRNG----------------- 355
+ I V + +P+ GD V W +
Sbjct: 17 HLDCPGRIPDTIVVVAGNKLRLD---VPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 73
Query: 356 ------------VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
+ + RV + ED G YT N +GE +
Sbjct: 74 TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 133
Query: 404 TLFV 407
T+ V
Sbjct: 134 TVKV 137
Score = 42.0 bits (98), Expect = 1e-04
Identities = 14/82 (17%), Positives = 20/82 (24%)
Query: 60 ENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPED 119
+ P + F R R + ED
Sbjct: 55 AITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKED 114
Query: 120 SGTYTCRAVNLVGFAEVQATLQ 141
G YT N VG +V T++
Sbjct: 115 EGVYTVTVKNPVGEDQVNLTVK 136
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 55.5 bits (133), Expect = 7e-09
Identities = 23/222 (10%), Positives = 52/222 (23%), Gaps = 47/222 (21%)
Query: 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
+ G + +C G + W ++ ++ + ++ V +E
Sbjct: 12 LAQIGDSVSLTCST--TGCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNE 66
Query: 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634
Y+C AT + ++I
Sbjct: 67 HSYLCTATCESRKLEKGIQVEI-------------------------------------Y 89
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
+ + + G+ C V V + + +K
Sbjct: 90 SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL 149
Query: 694 VTLDITKCVPA----DSGVYMCKAINRAGEAVSSTSLKVKSK 731
T + V +C+A E S +++ K
Sbjct: 150 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVK 191
Score = 51.3 bits (122), Expect = 2e-07
Identities = 23/230 (10%), Positives = 53/230 (23%), Gaps = 52/230 (22%)
Query: 195 IKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDS 253
+ G C + + W +G E L + +
Sbjct: 13 AQIGDSVSLTCS---TTGCESPFFSWRTQIDSPLNGKVTNEGTT---STLTMNPVSFGNE 66
Query: 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVS 313
Y C A + + +
Sbjct: 67 HSYLCTATCESRKLEKGIQV-------------------------------------EIY 89
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVG-DSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
P + + + + + V +L++ L+ +++ +
Sbjct: 90 SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL 149
Query: 373 VALNFKYTY---PEDSG-TYTCRAVNELGEAVTSSTLFVESKASLQLDTQ 418
+ + T+ ED G CRA + E ++ +A +L
Sbjct: 150 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDE---MDSVPTVRQAVKELQVY 196
Score = 45.1 bits (106), Expect = 2e-05
Identities = 20/188 (10%), Positives = 45/188 (23%), Gaps = 46/188 (24%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
W G + ++ L + + +Y C A E +
Sbjct: 33 FSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV--- 86
Query: 144 GSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203
P + ++ G+
Sbjct: 87 -----------------------------------EIYSFPKDPEIHLSGPLEAGKPITV 111
Query: 204 ECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETNNFGFVALD---IMQCLPEDSG-VYTC 258
+C + V + ++++ + +KS + + + ED G V C
Sbjct: 112 KCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVC 171
Query: 259 RAVNALGQ 266
RA + +
Sbjct: 172 RAKLHIDE 179
Score = 45.1 bits (106), Expect = 2e-05
Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 516 VEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH----VR 570
+E GK C + V L+++ + + ++ + L V
Sbjct: 103 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI 162
Query: 571 AEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHP 609
+ + +C+A + E + +++ K +L+
Sbjct: 163 EDIGKVLVCRAKLHIDEMDSVPTVRQAVK---ELQVYIS 198
Score = 44.0 bits (103), Expect = 6e-05
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
G S C G + F W ++ + + V ++ TL + + Y
Sbjct: 15 IGDSVSLTCSTT--GCESPFFSWR-TQIDSPLNGK--VTNEGTTSTLTMNPVSFGNEHSY 69
Query: 710 MCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
+C A + + +++ S L
Sbjct: 70 LCTATCESRKLEKGIQVEIYSFPKDPEIHLSG 101
Score = 35.1 bits (80), Expect = 0.045
Identities = 10/92 (10%), Positives = 24/92 (26%), Gaps = 11/92 (11%)
Query: 52 TVTKPKSIENLRERGH------AHFECKLEPVT-DSNLKVEWFKNGRPVT----IGHRFR 100
+ + G +C + V L+++ K + + R
Sbjct: 87 EIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADR 146
Query: 101 PIHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132
+ + + I + CRA +
Sbjct: 147 KSLETKSLEVTFTPVIEDIGKVLVCRAKLHID 178
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 51.1 bits (122), Expect = 4e-08
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 17/103 (16%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF-- 240
L++ ++ +G+ A F L ++ WF N +KS +
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGALRY 63
Query: 241 --------VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + +DSG + S L +
Sbjct: 64 RIEQKGLQHRLILHAVKHQDSGALVG---FSCPGVQDSAALTI 103
Score = 50.4 bits (120), Expect = 7e-08
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 17/100 (17%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM----------GSRFHVQHDFGYVTL 696
++ +G+ A + + + T WF+NG ELK R+ ++ L
Sbjct: 19 QVYDGEDAVFSLDLSTIIQGT----WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRL 74
Query: 697 DITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
+ DSG + S +L ++ S S
Sbjct: 75 ILHAVKHQDSGALVG---FSCPGVQDSAALTIQESSGPSS 111
Score = 49.6 bits (118), Expect = 2e-07
Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS----------RITT 555
L+++ V +G++A FS L ++ WF N + L+ + R
Sbjct: 11 LVAGLEDVQ-VYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ + L V+ +D G + + +A++ I+ +G
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALV---GFSCPGVQDSAALTIQESSG 108
Score = 47.3 bits (112), Expect = 8e-07
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 17/101 (16%)
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS----------NRVSTM 367
+ D+ V + + A F L + ++ TW NG ++++ R
Sbjct: 11 LVAGLEDVQVYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGALRYRIE 66
Query: 368 HDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L +DSG S+ L ++
Sbjct: 67 QKGLQHRLILHAVKHQDSGALVG---FSCPGVQDSAALTIQ 104
Score = 41.1 bits (96), Expect = 1e-04
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 14/84 (16%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT----------IGHRFRP 101
+ + + A F L + ++ WF NG + R+R
Sbjct: 10 RLVAGLEDVQVYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 102 IHDFGYVALDIIDTIPEDSGTYTC 125
L + +DSG
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVG 89
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 51.5 bits (123), Expect = 4e-08
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR--------NEKPLEDSSRITT 555
T + I VEEG+ C ++W NE P+ +S+
Sbjct: 2 GSLTNHTETI-TVEEGQTLTLKCVT--SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQL 58
Query: 556 KH-DFGYVAMDLSHVRAEDEGIYICKA-TNALGEAVTT 591
H +++ + +V +DEG+Y C ++++
Sbjct: 59 LHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVK 96
Score = 44.2 bits (104), Expect = 1e-05
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 11/89 (12%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR--------NGVPIQASNRVSTM 367
T I V E Q + + WL N P+ +++ +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVT--SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 368 H-DFGYVALNFKYTYPEDSGTYTCRAVNE 395
H +++ +D G Y C ++
Sbjct: 60 HHSANQLSITVPNVTLQDEGVYKCLHYSD 88
Score = 43.8 bits (103), Expect = 2e-05
Identities = 16/108 (14%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEW--------FHNNVPIKSGSRFT-E 234
T + ++EGQ +C +++ ++W F N P+ S++
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSS--LQWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQ 282
++ +++ + +D GVY C + + ++V + +
Sbjct: 60 HHSANQLSITVPNVTLQDEGVYKCL-HYSDSVSTKEVKVIVLATMKGE 106
Score = 43.1 bits (101), Expect = 3e-05
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEW--------FVNGVELKMGSRFHVQH-DFGYVTLDI 698
+ EGQ+ C + + +W F+N + S++ + H +++ +
Sbjct: 13 VEEGQTLTLKCVTSLRKNSS--LQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITV 70
Query: 699 TKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
D GVY C + + V
Sbjct: 71 PNVTLQDEGVYKCL-HYSDSVSTKEVKVIV 99
Score = 38.1 bits (88), Expect = 0.002
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 68 AHFECKLEPVTDSNLKVEWFK--------NGRPVTIGHRFRPIH-DFGYVALDIIDTIPE 118
+C N ++W N PV +++ +H +++ + + +
Sbjct: 19 LTLKCVTSL--RKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQ 76
Query: 119 DSGTYTCRAVN 129
D G Y C +
Sbjct: 77 DEGVYKCLHYS 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 54.5 bits (131), Expect = 6e-08
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 507 TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEW-FRNEKPLEDSSRITTKHDFGYVAMD 565
++ ++ G C KV NE+ L S + G +
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDT--KQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLF 304
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKI 596
V+ ED G+Y C A + +K+
Sbjct: 305 FKKVQVEDGGVYTCYAMGETFNETLSVELKV 335
Score = 53.3 bits (128), Expect = 2e-07
Identities = 28/128 (21%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 603 QLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVP 662
L H + L I L+ +E E G + C
Sbjct: 228 DLYCMHSKKLHNIFSLDFFNCSEYKESAW---------------EAHLGDTLTIRCDTKQ 272
Query: 663 VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722
G + N L GS V G L K D GVY C A+
Sbjct: 273 QGMTKVWVSP-SNEQVLSQGSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNETL 329
Query: 723 STSLKVKS 730
S LKV +
Sbjct: 330 SVELKVYN 337
Score = 44.8 bits (106), Expect = 7e-05
Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Query: 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS---RFTETNNFGFVALDIMQC 248
E G C KV +N + S + N L +
Sbjct: 255 AWEAHLGDTLTIRCDT--KQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG----DLFFKKV 308
Query: 249 LPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
ED GVYTC A+ S L V++
Sbjct: 309 QVEDGGVYTCYAMGETFNETLSVELKVYN 337
Score = 44.4 bits (105), Expect = 9e-05
Identities = 18/88 (20%), Positives = 23/88 (26%), Gaps = 5/88 (5%)
Query: 321 PMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA-SNRVSTMHDFGYVALNFKY 379
KV + + + + S G L FK
Sbjct: 252 KESAWEAHLGDTLTIRCDT--KQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLFFKK 307
Query: 380 TYPEDSGTYTCRAVNELGEAVTSSTLFV 407
ED G YTC A+ E S L V
Sbjct: 308 VQVEDGGVYTCYAMGETFNETLSVELKV 335
Score = 41.0 bits (96), Expect = 0.001
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 7/76 (9%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVALDIIDTIPEDSGTYTC 125
C + KV + V + + + G L ED G YTC
Sbjct: 264 LTIRCDTK--QQGMTKVWVSPSNEQVLSQGSNGSVSVRN-G--DLFFKKVQVEDGGVYTC 318
Query: 126 RAVNLVGFAEVQATLQ 141
A+ + L+
Sbjct: 319 YAMGETFNETLSVELK 334
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 49.8 bits (118), Expect = 1e-07
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 22/122 (18%)
Query: 621 PASPMPQEPERQY-EKPIFTQLLTGTSEIMEGQSAHYDCRVV---PVGDPTMRFEWF--- 673
S +EP + +KP + + G+ A +V PT++ WF
Sbjct: 3 SGSSGAEEPTGVFLKKP-------DSVSVETGKDAVVVAKVNGKELPDKPTIK--WFKGK 53
Query: 674 VNGVELKMGSRFHVQHDF------GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727
+ K G+RF + V L I K V D G Y + + ++
Sbjct: 54 WLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
Query: 728 VK 729
V+
Sbjct: 114 VE 115
Score = 49.8 bits (118), Expect = 1e-07
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 10/113 (8%)
Query: 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWF---HNNVPIKSGSRF 232
+F + ++ G+ A ++ + ++WF + KSG+RF
Sbjct: 6 SGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARF 65
Query: 233 T------ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKK 279
+ +N V L I + + D G Y N+ V + +
Sbjct: 66 SFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 44.4 bits (104), Expect = 1e-05
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK---VEWFR---NEKPLEDSSRITTKH 557
VF K ++ VE GK+A ++ G ++WF+ E + +R + K
Sbjct: 13 GVFLKKPDSVS-VETGKDAVVVAKV--NGKELPDKPTIKWFKGKWLELGSKSGARFSFKE 69
Query: 558 DFGYVA------MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + + V D G Y + ++ ++
Sbjct: 70 SHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
Score = 43.3 bits (101), Expect = 2e-05
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 14/105 (13%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK---VTWLR---------NGVPIQASNR 363
VF + + V + A A++ G + W + +G
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKV--NGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
++ + V L+ D G Y + + VE
Sbjct: 71 HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
Score = 40.2 bits (93), Expect = 3e-04
Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 17/102 (16%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNL----KVEWFK---------NGRPVTIGHRF 99
+ KP S+ A K V L ++WFK +G +
Sbjct: 16 LKKPDSVSV-ETGKDAVVVAK---VNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESH 71
Query: 100 RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ V L I + D G Y +
Sbjct: 72 NSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 3e-07
Identities = 107/676 (15%), Positives = 199/676 (29%), Gaps = 251/676 (37%)
Query: 91 RPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILT 150
RP+T+ H G + ++ +P A LQ + + +
Sbjct: 7 RPLTLSH--------GSLEHVLL--VPT----------ASFFIASQ---LQEQFNKILPE 43
Query: 151 STQNETGLEQ-----------IQYLEDK-SKYQRGEYIE--ETTTQAPIFTTS-LKNCEI 195
T+ ++ + Y+ + G++ + F L+ +I
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--FENCYLEGNDI 101
Query: 196 KEGQRAH-FECRLIPVSDNTM--KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPED 252
H +L+ +D T+ E IK+ ++ IM P D
Sbjct: 102 ------HALAAKLLQENDTTLVKTKEL------IKN-----------YITARIMAKRPFD 138
Query: 253 SGVYTCRAVNALGQAVTSGNLLVHSKKSI---QTETQHGESLSRLQQLEQGRYQR-TSII 308
++ +AL +AV GN + +I Q G + ++L + YQ ++
Sbjct: 139 K-----KSNSALFRAVGEGNAQLV---AIFGGQ-----GNTDDYFEEL-RDLYQTYHVLV 184
Query: 309 EDTVSQ-APVFTQPMRDIHVAENQAAHFEARLIPVG-DSKLKVTWLRN-----------G 355
D + A ++ +R AE ++ G + + WL N
Sbjct: 185 GDLIKFSAETLSELIRTTLDAE--------KVFTQGLNI---LEWLENPSNTPDKDYLLS 233
Query: 356 VPI--------QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCR-----AV--------N 394
+PI Q ++ V T G+ + G AV
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELR---SYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 395 ELGEAVTS--STLF---VESKASLQLDTQNEAALQK-IQNLEDT-------SRFKRKE-E 440
+V + LF V + + + L+ ++N E S +++ +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 441 EEVEVTQQ---PSFTVQL---NGPTELVEGEGTIITDTQHPKGLE----KIRKLEDTEPH 490
+ V T V++ NG LV ++ P+ L +RK
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLV------VSG--PPQSLYGLNLTLRKA------ 396
Query: 491 KRPEVDDNATKQRPVFT--KPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE 548
K P D + R F+ K FS R +PV P F + L
Sbjct: 397 KAPSGLDQS---RIPFSERKL-------------KFSNRFLPVASP------F-HSHLLV 433
Query: 549 DS-SRITT---KHDFGYVAMDL----------SHVRAEDEGIYICKATNALGEAVTTASM 594
+ I K++ + A D+ S +R I + + + + +
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI-----SERIVDCIIR--L 486
Query: 595 KIKTKAGLQLETQH-----PEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649
+K + Q + H P G + L T
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVL--------------------------THRNK 520
Query: 650 EGQSAHYDCRVVPVGD 665
+G RV+ G
Sbjct: 521 DGTGV----RVIVAGT 532
Score = 53.1 bits (127), Expect = 4e-07
Identities = 53/311 (17%), Positives = 99/311 (31%), Gaps = 121/311 (38%)
Query: 55 KPKSIENLRERGHAHFECKL-----EPVTDSNLKVEWFKNGRPVTI---GHRFRPIHDFG 106
K+ +++ R HF+ + V + N +TI G + + I +
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVIN---------NPVNLTIHFGGEKGKRIRE-N 1687
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC---RGSAGILTSTQNETGLEQIQY 163
Y A+ I +TI + G + F E+ R G+L++TQ
Sbjct: 1688 YSAM-IFETIVD--GKLKTEKI----FKEINEHSTSYTFRSEKGLLSATQF--------- 1731
Query: 164 LEDKSKYQRGEYIEETTTQAPIFTTS------LKNCEIKEG---QRAHF------E---- 204
TQ + LK +G A F E
Sbjct: 1732 -----------------TQPALTLMEKAAFEDLK----SKGLIPADATFAGHSLGEYAAL 1770
Query: 205 -CR--LIPVSDNTMKV-----EWFHNNVPIKSGSRFTETNNFGFVALD------------ 244
++ + ++V VP R +N+G +A++
Sbjct: 1771 ASLADVMSIES-LVEVVFYRGMTMQVAVPRDELGR----SNYGMIAINPGRVAASFSQEA 1825
Query: 245 ---IMQCLPEDSGVYTCRAVN---ALGQAVTSG---------NLLVHSK-KSIQTETQHG 288
+++ + + +G + VN Q V +G N+L K + I +
Sbjct: 1826 LQYVVERVGKRTG-WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII-ELQ 1883
Query: 289 ESLSRLQQLEQ 299
+SLS L+++E
Sbjct: 1884 KSLS-LEEVEG 1893
Score = 43.1 bits (101), Expect = 4e-04
Identities = 45/261 (17%), Positives = 91/261 (34%), Gaps = 68/261 (26%)
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
+ +GF LDI+ P + ++ G+ + N ++ ET L +
Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFG---GEKGKRIRE-NYS-----AMIFETIVDGKLKTEK 1705
Query: 296 QLEQGRYQRTSII----EDTVSQAPVFTQP------------MR-------DIHVA---- 328
++ TS + +S FTQP ++ D A
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSA-TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL 1764
Query: 329 -ENQA-AHFEARLIPVGDSKLKVTWLR-----NGVPIQASNRVSTMHDFGYVALNFKYTY 381
E A A A ++ + ++V + R VP R ++G +A+N
Sbjct: 1765 GEYAALASL-ADVMSIESL-VEVVFYRGMTMQVAVPRDELGRS----NYGMIAIN----- 1813
Query: 382 PEDSGTYTCR-AVNELGEAVTSST-LFVESKASLQLDTQ------NEAALQKIQNLEDTS 433
P + A+ + E V T VE + ++ Q + AL + N+ +
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEI-VNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
Query: 434 RFKRKEEEEVEVTQQPSFTVQ 454
+ ++ + E++ S +++
Sbjct: 1873 KLQKIDIIELQK----SLSLE 1889
Score = 41.2 bits (96), Expect = 0.002
Identities = 68/371 (18%), Positives = 110/371 (29%), Gaps = 137/371 (36%)
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPM-RDIH----VAE---NQA-AHFEARLIPVGDSKLKV 349
QG SQ Q M D++ A+ N+A HF+ G S L +
Sbjct: 1624 QG------------SQE----QGMGMDLYKTSKAAQDVWNRADNHFKDTY---GFSILDI 1664
Query: 350 TWLRNGVPIQASNRVSTMHDFG----------YVALNFKYTYPEDSGTYTCRAVNELGEA 399
+ N P+ T+H FG Y A+ + D T + E+ E
Sbjct: 1665 --VINN-PVNL-----TIH-FGGEKGKRIRENYSAM--IFETIVDGKLKTEKIFKEINEH 1713
Query: 400 VTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPS-FTVQLNGP 458
TS T F K L TQ QP+ ++
Sbjct: 1714 STSYT-FRSEKGLLSA-TQF---------------------------TQPALTLMEK-AA 1743
Query: 459 TELVEGEGTIITDTQ---HPKGLE--------KIRKLEDTEPHKRPEVDDNATKQRPVFT 507
E ++ +G I D H G E + +E V+ R +
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLG-EYAALASLADVMSIESL-------VE--VVFYRGMTM 1793
Query: 508 KPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS 567
+ AV + + +I + +P F E R+ + G++
Sbjct: 1794 Q-----VAVPRDELGRSNYGMIAI-NPGRVAASFSQEALQYVVERVGKRT--GWL----- 1840
Query: 568 HVRA----EDEGIYICKATNALGE--AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
V + Y+ A G+ A+ T + + L+KI +E
Sbjct: 1841 -VEIVNYNVENQQYVA----A-GDLRALDTVTNVLNFI-----------KLQKIDIIELQ 1883
Query: 622 ASPMPQEPERQ 632
S +E E
Sbjct: 1884 KSLSLEEVEGH 1894
Score = 32.7 bits (74), Expect = 0.65
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 35/136 (25%)
Query: 6 SPPNPQDS--------SPYLS----SKKETSYHWQ--NVPVPEWSKEQ---ENAKKKKNF 48
P +DS SP LS ++++ + N +P + + N K N
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK--NL 377
Query: 49 IYYTVT-KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI----H 103
+ V+ P+S+ L + K D + ++ F + R + +RF P+ H
Sbjct: 378 V---VSGPPQSLYGLNLTLR---KAKAPSGLDQS-RIP-F-SERKLKFSNRFLPVASPFH 428
Query: 104 DFGYVALDIIDTIPED 119
+ D I +D
Sbjct: 429 SH-LLV-PASDLINKD 442
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 48.4 bits (115), Expect = 2e-06
Identities = 31/226 (13%), Positives = 52/226 (23%), Gaps = 62/226 (27%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-------DSSRITTKHDFGYVAMDLS--- 567
G++ P G+ + W NE L S I + ++ +
Sbjct: 12 LGESVTLPLE-FPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY 70
Query: 568 -----HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+++ ED G Y + + + K+
Sbjct: 71 SLQLSNLKMEDTGSYRAQIST--------------------------KTSAKLSSYTLRI 104
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
+ + +F H C V D + F W G L
Sbjct: 105 LRQLRNIQVTNHSQLFQN---------MTCELHLTCSVED-ADDNVSFRWEALGNTLSSQ 154
Query: 683 SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
V D + Y C A N S S +
Sbjct: 155 PNLTVSWD---PRIS-------SEQDYTCIAENAVSNLSFSVSAQK 190
Score = 46.1 bits (109), Expect = 1e-05
Identities = 30/227 (13%), Positives = 54/227 (23%), Gaps = 68/227 (29%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPI------------------KSGSRFTETNNF 238
G+ P + + W N + K G R T ++
Sbjct: 12 LGESVTLPLE-FPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY 70
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
+L + ED+G Y + ++S L + + T H +
Sbjct: 71 ---SLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQN----- 122
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
T + T S + D + W G +
Sbjct: 123 -----MTCELHLTCS--------------------------VEDADDNVSFRWEALGNTL 151
Query: 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
+ ++ D YTC A N + S +
Sbjct: 152 SSQPNLTVSWD----------PRISSEQDYTCIAENAVSNLSFSVSA 188
Score = 42.3 bits (99), Expect = 2e-04
Identities = 14/73 (19%), Positives = 19/73 (26%), Gaps = 11/73 (15%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
H +C + D + W L +T D R E
Sbjct: 121 QNMTCELHLTCS-VEDADDNVSFRWEALGNTLSSQPNLTVSWD----------PRISSEQ 169
Query: 576 IYICKATNALGEA 588
Y C A NA+
Sbjct: 170 DYTCIAENAVSNL 182
Score = 39.2 bits (91), Expect = 0.002
Identities = 28/218 (12%), Positives = 48/218 (22%), Gaps = 63/218 (28%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA---------------LDI 112
+ P + + W N + +V L +
Sbjct: 16 VTLPLEF-PAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
+ ED+G+Y + I T T + ++ L
Sbjct: 75 SNLKMEDTGSYRAQ---------------------ISTKTSAKLSSYTLRILRQLRN--- 110
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
T + + H C + DN W + S
Sbjct: 111 -----------IQVTNHSQLFQ-NMTCELHLTCSVEDADDNV-SFRWEALGNTLSSQPNL 157
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTS 270
T + + YTC A NA+ S
Sbjct: 158 TVSWDPR----------ISSEQDYTCIAENAVSNLSFS 185
Score = 35.0 bits (80), Expect = 0.047
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 13/77 (16%)
Query: 69 HFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128
H C +E D N+ W G ++ D YTC A
Sbjct: 128 HLTCSVEDADD-NVSFRWEALGNTLSSQPNLTVSWD----------PRISSEQDYTCIAE 176
Query: 129 NLVGFAEVQATLQ--CR 143
N V + Q C
Sbjct: 177 NAVSNLSFSVSAQKLCE 193
Score = 31.5 bits (71), Expect = 0.74
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 22/109 (20%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI-------QASNRV 364
+S P+ ++ ++ P G+ +TWL N + S +
Sbjct: 1 MSLTPL------MVNGILGESVTLPLE-FPAGEKVNFITWLFNETSLAFIVPHETKSPEI 53
Query: 365 STMHDFGYVALNFKYTY--------PEDSGTYTCRAVNELGEAVTSSTL 405
+ LNF +Y ED+G+Y + + ++S TL
Sbjct: 54 HVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTL 102
Score = 30.0 bits (67), Expect = 2.3
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 16/96 (16%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-------GSRFHVQHDFGYV------- 694
+ G+S P G+ W N L HV +
Sbjct: 11 ILGESVTLPLEF-PAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69
Query: 695 -TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+L ++ D+G Y + + +SS +L++
Sbjct: 70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRIL 105
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 49.4 bits (117), Expect = 5e-06
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEY------IEETTTQAPIFTTSLKNCEIK 196
R I T N + E + +G + ++N E+
Sbjct: 122 RAELAISTFWPNFYQV----IFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVN 177
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA-LDIMQCLPEDSGV 255
GQ A F+C I + ++ +V T++ F+A +++ D+G
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 237
Query: 256 YTCRAVNALGQAVTSGNLLV 275
Y C G +++ LV
Sbjct: 238 YRCMIRTEGGVGISNYAELV 257
Score = 47.5 bits (112), Expect = 2e-05
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT---LDITKCVP 703
E+ GQ A + C + G ++ G++++ ++ ++
Sbjct: 175 EVNAGQFATFQCSAI--GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK 232
Query: 704 ADSGVYMCKAINRAGEAVSSTSLKV 728
D+G Y C G +S+ + V
Sbjct: 233 RDAGKYRCMIRTEGGVGISNYAELV 257
Score = 44.4 bits (104), Expect = 1e-04
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 6/106 (5%)
Query: 305 TSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWL---RNGVPIQAS 361
++ ++ P F + +++ V Q A F+ +G + +
Sbjct: 155 VKVLGHPCTRTPHFLRI-QNVEVNAGQFATFQCS--AIGRTVAGDRLWLQGIDVRDAPLK 211
Query: 362 NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
T + N T D+G Y C E G +++ V
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV 257
Score = 40.9 bits (95), Expect = 0.002
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAM---DLSHVRAE 572
V G+ A F C +G + + D+ K + ++ +
Sbjct: 176 VNAGQFATFQCS--AIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR 233
Query: 573 DEGIYICKATNALGEAVTTASMKI 596
D G Y C G ++ + +
Sbjct: 234 DAGKYRCMIRTEGGVGISNYAELV 257
Score = 38.6 bits (89), Expect = 0.009
Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 2/95 (2%)
Query: 47 NFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFG 106
+ +++E + A F+C T + ++ +
Sbjct: 162 CTRTPHFLRIQNVE-VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 220
Query: 107 YVA-LDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
++A ++++T D+G Y C G
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAE 255
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 45.3 bits (107), Expect = 5e-06
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 17/98 (17%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS-------------RITTKHDFGYV 562
E+G + C L +V W + ++ L + R+ G
Sbjct: 15 AEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLG-- 72
Query: 563 AMDLSHVRAEDEGIYICK-ATNALGEAVTTASMKIKTK 599
+ L + D G Y C T G +++
Sbjct: 73 -LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109
Score = 38.7 bits (90), Expect = 0.001
Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 11/102 (10%)
Query: 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPI-----KSGSRFTE-----TNNFGFVALDI 245
++G +C L + +V W + + G + + L +
Sbjct: 16 EKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTL 75
Query: 246 MQCLPEDSGVYTCR-AVNALGQAVTSGNLLVHSKKSIQTETQ 286
D+G Y C G L V + +
Sbjct: 76 QSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117
Score = 37.6 bits (87), Expect = 0.003
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTI-----GHRFRP-----IHDFGYVALDIIDTIP 117
+C L T +V W + + + I G P + + L +
Sbjct: 21 IILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTV 80
Query: 118 EDSGTYTCR 126
D+G Y C
Sbjct: 81 NDTGEYFCI 89
Score = 32.6 bits (74), Expect = 0.15
Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 17/102 (16%)
Query: 320 QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI-------------QASNRVST 366
+ +I + + + L +V W + + +RV+
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 367 MHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
G L + D+G Y C + + + +F+E
Sbjct: 68 GPGLG---LTLQSLTVNDTGEYFCI-YHTYPDGTYTGRIFLE 105
Score = 31.4 bits (71), Expect = 0.30
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 11/96 (11%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH----------DFGYVTLDIT 699
+G S C + + W L + + H + L +
Sbjct: 17 KGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQ 76
Query: 700 KCVPADSGVYMCK-AINRAGEAVSSTSLKVKSKSDI 734
D+G Y C G L+V S
Sbjct: 77 SLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 47.3 bits (112), Expect = 6e-06
Identities = 28/237 (11%), Positives = 57/237 (24%), Gaps = 64/237 (27%)
Query: 516 VEEGKNAHFSCRLIPVGDP---TLKVEWFRNEKPL---------------EDSSRITTKH 557
VE G N C+ L V W +K + R
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 558 DF---GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKK 614
D G A+ ++ V+ +D G+Y C ++ K + +++
Sbjct: 73 DQLSLGNAALQITDVKLQDAGVYRCM--------ISYGGADYK-RITVKV---------- 113
Query: 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV 674
+ + C+ G P W
Sbjct: 114 -----NAPYNKINQRILVVDP--------------VTSEHELTCQA--EGYPKAEVIWTS 152
Query: 675 NGVELKMGSRFHVQHDFGYVTLDIT---KCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ ++ G ++T + + ++ C E + L +
Sbjct: 153 SDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 44.2 bits (104), Expect = 6e-05
Identities = 27/234 (11%), Positives = 56/234 (23%), Gaps = 64/234 (27%)
Query: 198 GQRAHFECRLIP---VSDNTMKVEWFHNNVPI---KSG---------------SRFTETN 236
G EC+ + + V W + I G +
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQ 296
+ G AL I +D+GVY C ++ G + V++ + +
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITVKVNAPYNKINQRILVVD------ 128
Query: 297 LEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGV 356
V +A P K +V W +
Sbjct: 129 -----------------------------PVTSEHELTCQAEGYP----KAEVIWTSSDH 155
Query: 357 PI--QASNRVSTMHDFGYVALNFKYTY-PEDSGTYTCRAVNELGEAVTSSTLFV 407
+ + ++ + + + + C E ++ L +
Sbjct: 156 QVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 43.1 bits (101), Expect = 1e-04
Identities = 33/253 (13%), Positives = 66/253 (26%), Gaps = 69/253 (27%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSN---LKVEWFKNGRPVTI------------- 95
TVT PK + + + ECK + L V W + +
Sbjct: 3 TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62
Query: 96 --GHRFRPIHDF---GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILT 150
R R + D G AL I D +D+G Y C ++ G + T++ +
Sbjct: 63 SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITVKVNAPYNKIN 121
Query: 151 STQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPV 210
C+
Sbjct: 122 QRILVVD--------------------------------------PVTSEHELTCQ---- 139
Query: 211 SDN--TMKVEWF---HNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265
++ +V W H + K+ + ++ F ++ + ++ C
Sbjct: 140 AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDP 199
Query: 266 QAVTSGNLLVHSK 278
+ + L++
Sbjct: 200 EENHTAELVIPEL 212
Score = 40.4 bits (94), Expect = 0.001
Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 7/99 (7%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD--- 558
P + + +C+ G P +V W ++ + TT
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQA--EGYPKAEVIWTSSDHQVLSGKTTTTNSKREE 171
Query: 559 -FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
V L + I+ C E TA + I
Sbjct: 172 KLFNVTSTLR-INTTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 34.2 bits (78), Expect = 0.097
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 22/111 (19%)
Query: 649 MEGQSAHYDCRVVPVGDP---TMRFEW---------FVNGVELKMGS------RFHVQHD 690
G + +C+ + W FV+G E R + D
Sbjct: 14 EYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKD 73
Query: 691 F---GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
G L IT D+GVY C I+ G ++KV + + +++
Sbjct: 74 QLSLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITVKVNAPYNKINQR 123
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 47.3 bits (111), Expect = 2e-05
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLP 250
+ + R + C P+ W H +S ++ N L I
Sbjct: 508 QKVSLAPNSRYYLSC---PMESRHATYSWRHKENVEQSCEPGHQSPNCI---LFIENLTA 561
Query: 251 EDSGVYTCRAV-NALGQAVTSGNLLV 275
+ G Y C A + + LL
Sbjct: 562 QQYGHYFCEAQEGSYFREAQHWQLLP 587
Score = 46.9 bits (110), Expect = 2e-05
Identities = 17/134 (12%), Positives = 27/134 (20%), Gaps = 9/134 (6%)
Query: 15 PYLSSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKL 74
PY + + K+ P +L + C +
Sbjct: 465 PYCGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPM 524
Query: 75 EPVTDSNL-KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF 133
E S W + L I + + G Y C A +
Sbjct: 525 E----SRHATYSWRHKENVEQSCEPGHQSPNCI---LFIENLTAQQYGHYFCEAQEG-SY 576
Query: 134 AEVQATLQCRGSAG 147
Q G
Sbjct: 577 FREAQHWQLLPEDG 590
Score = 38.1 bits (87), Expect = 0.013
Identities = 9/63 (14%), Positives = 14/63 (22%), Gaps = 4/63 (6%)
Query: 348 KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAV-NELGEAVTSSTLF 406
+W Q+ + L + + G Y C A L
Sbjct: 530 TYSWRHKENVEQSCEPGHQSPNCI---LFIENLTAQQYGHYFCEAQEGSYFREAQHWQLL 586
Query: 407 VES 409
E
Sbjct: 587 PED 589
Score = 35.0 bits (79), Expect = 0.10
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 7/81 (8%)
Query: 521 NAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580
+ SC P+ W E + + + ++ A+ G Y C+
Sbjct: 517 RYYLSC---PMESRHATYSWRHKENVEQSCEPGHQSPNCILF---IENLTAQQYGHYFCE 570
Query: 581 ATNALGEAVTTASMKIKTKAG 601
A ++ + G
Sbjct: 571 AQEG-SYFREAQHWQLLPEDG 590
Score = 34.2 bits (77), Expect = 0.17
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 4/70 (5%)
Query: 662 PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI-NRAGEA 720
P+ + W + H + ++T G Y C+A
Sbjct: 523 PMESRHATYSWRHKENVEQSCEPGHQSPNCILFIENLT---AQQYGHYFCEAQEGSYFRE 579
Query: 721 VSSTSLKVKS 730
L +
Sbjct: 580 AQHWQLLPED 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 2e-05
Identities = 65/429 (15%), Positives = 116/429 (27%), Gaps = 147/429 (34%)
Query: 4 VWSPPNPQDSSPYLSSKKETSYH---WQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIE 60
+ SP + P + ++ + + V F Y V++ +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---------------FAKYNVSRLQPYL 138
Query: 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDS 120
LR+ L L+ V +D
Sbjct: 139 KLRQ--------ALL-----ELRPA--------------------KNVLID--------- 156
Query: 121 GTYTCRAVNLVGF------AEV--QATLQCRGSAGI--LTSTQ---NETGLEQIQYLE-- 165
G ++G +V +QC+ I L ET LE +Q L
Sbjct: 157 G--------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 166 -DKSKYQRGEYIEETTTQAPIFTTSLKN-CEIKEGQRA--------------HFE--CRL 207
D + R ++ + L+ + K + F C++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 208 I------PVSDNTMKVEWFHNNVPIKSGSR-FTETNNFGFVA--LDI-MQCLPEDSGVYT 257
+ V+D H + + S T + LD Q LP
Sbjct: 269 LLTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR------ 320
Query: 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQR-TSIIEDTV-SQA 315
+ +T N S I + G L+ + + T+IIE ++
Sbjct: 321 --------EVLT-TNPRRLS--IIAESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 316 PVFTQPM-RDIHVAENQAAHF-EARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
P + M + V F + IP L + W + + V+ +H + V
Sbjct: 368 PAEYRKMFDRLSV-------FPPSAHIPT--ILLSLIWF-DVIKSDVMVVVNKLHKYSLV 417
Query: 374 ALNFK-YTY 381
K T
Sbjct: 418 EKQPKESTI 426
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 42.9 bits (101), Expect = 3e-05
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 504 PVFTKPL-QNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
PL QN+ V EG A +CR+ + + ++W + D
Sbjct: 6 SQGQFPLTQNV-TVVEGGTAILTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRIE 62
Query: 563 AMDLSH---------VRAEDEGIYIC 579
+ S V DEG Y C
Sbjct: 63 LVRASWHELSISVSDVSLSDEGQYTC 88
Score = 42.5 bits (100), Expect = 4e-05
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEW--------FVNGVELKMGSRFHV 687
LT ++EG +A CRV + +++ W + + + +R +
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQ--WSNPAQQTLYFDDKKALRDNRIEL 63
Query: 688 QH-DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ +++ ++ +D G Y C ++ S L V
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTC-SLFTMPVKTSKAYLTV 104
Score = 41.8 bits (98), Expect = 7e-05
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 314 QAPVFTQP-MRDIHVAENQAAHFEARLIPVGDSKLKVTWLR--------NGVPIQASNRV 364
+ P +++ V E A R+ ++ + W + NR+
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRI 61
Query: 365 STMH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ + ++++ D G YTC + + + + L V
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQYTCS-LFTMPVKTSKAYLTV 104
Score = 41.0 bits (96), Expect = 1e-04
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--------NNVPIKSGSRFTETNN-FGFV 241
+N + EG A CR+ + + ++W + ++ +R + +
Sbjct: 14 QNVTVVEGGTAILTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL 71
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
++ + D G YTC + + + L V
Sbjct: 72 SISVSDVSLSDEGQYTCS-LFTMPVKTSKAYLTV 104
Score = 37.2 bits (86), Expect = 0.003
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 68 AHFECKLEPVTDSNLKVEWFK--------NGRPVTIGHRFRPIH-DFGYVALDIIDTIPE 118
A C+++ + N ++W + + +R + + +++ + D
Sbjct: 24 AILTCRVDQ--NDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS 81
Query: 119 DSGTYTCRAVNLVGFAEVQATLQ 141
D G YTC + + +A L
Sbjct: 82 DEGQYTCS-LFTMPVKTSKAYLT 103
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 46.0 bits (108), Expect = 3e-05
Identities = 30/220 (13%), Positives = 52/220 (23%), Gaps = 38/220 (17%)
Query: 515 AVEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAED 573
GKN C++ L V R EK L R + V + R
Sbjct: 97 WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHH 153
Query: 574 EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQY 633
+ C+ L + T A QL+T +
Sbjct: 154 GANFSCRTELDLRPQ--GLELFENTSAPYQLQT--------------------------F 185
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRV---VPVGDPTMRFEWFVNGVELKMGSRFHVQHD 690
P L + C + PV + + L +
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPV--SEAQVHLALGDQRLNPTVTYGNDSF 243
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
++ +T + C I + ++ + S
Sbjct: 244 SAKASVSVTA-EDEGTQRLTCAVILGNQSQETLQTVTIYS 282
Score = 39.1 bits (90), Expect = 0.004
Identities = 34/245 (13%), Positives = 62/245 (25%), Gaps = 41/245 (16%)
Query: 171 QRGEYIEETTTQAP-IFTTSLKNCEIKEGQRAHFECRLI---PVSDNTMKVEWFHNNVPI 226
Q T P + G+ C++ P ++ T V +
Sbjct: 73 QSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLT--VVLLRGEKEL 130
Query: 227 KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQ 286
K E V ++ ++CR L L ++ Q +T
Sbjct: 131 KREPAVGEPAE---VTTTVLVRRDHHGANFSCRTELDLRPQ--GLELFENTSAPYQLQTF 185
Query: 287 HGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK 346
+ +P + V + F S+
Sbjct: 186 VLPA------------------TPPQLVSPRVLEVDTQGTVVCSLDGLFPV-------SE 220
Query: 347 LKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTY--TCRAVNELGEAVTSST 404
+V + + V+ +D + T ED GT TC + T T
Sbjct: 221 AQVHLALGDQRLNPT--VTYGNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQETLQT 277
Query: 405 LFVES 409
+ + S
Sbjct: 278 VTIYS 282
Score = 38.3 bits (88), Expect = 0.008
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 8/100 (8%)
Query: 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCR---LIPVGDPTLKVEWFRNEKPLEDSSRITTK 556
T P L + +E C L PV +V ++ L + +T
Sbjct: 184 TFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPV--SEAQVHLALGDQRL--NPTVTYG 239
Query: 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+D + A V AEDEG LG +
Sbjct: 240 ND-SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 278
Score = 35.6 bits (81), Expect = 0.052
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 346 KLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
L V LR ++ V + V ++CR +L L
Sbjct: 118 NLTVVLLRGEKELKREPAVGEPAE---VTTTVLVRRDHHGANFSCRTELDLRPQ--GLEL 172
Query: 406 FVESKASLQLDTQ 418
F + A QL T
Sbjct: 173 FENTSAPYQLQTF 185
Score = 32.5 bits (73), Expect = 0.49
Identities = 30/203 (14%), Positives = 54/203 (26%), Gaps = 44/203 (21%)
Query: 81 NLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
NL V + + + R + + V ++ ++CR L
Sbjct: 118 NLTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRT-----------EL 163
Query: 141 QCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCE-IKEGQ 199
R L + Q L P L + ++
Sbjct: 164 DLRPQGLELFENTSAPYQLQTFVL-------------------PATPPQLVSPRVLEVDT 204
Query: 200 RAHFECR---LIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVY 256
+ C L PVS+ +V + + + N F A + ED G
Sbjct: 205 QGTVVCSLDGLFPVSE--AQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQ 259
Query: 257 --TCRAVNALGQAVTSGNLLVHS 277
TC + T + ++S
Sbjct: 260 RLTCAVILGNQSQETLQTVTIYS 282
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 44.4 bits (104), Expect = 5e-05
Identities = 31/239 (12%), Positives = 60/239 (25%), Gaps = 65/239 (27%)
Query: 516 VEEGKNAHFSCRLIP-----VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA------- 563
V+EG C P L V WFR+ + + + T + V
Sbjct: 12 VQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRF 71
Query: 564 ------------MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEG 611
+ + R ED G Y + + K+
Sbjct: 72 RLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLN-------------- 117
Query: 612 LKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPV--GDPTMR 669
L+ +E+P + E G+ C + P +
Sbjct: 118 LEVTALIEKPDIHFLEPLE-------------------SGRPTRLSCSLPGSCEAGPPLT 158
Query: 670 FEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
F W N + + L +T C+ + + + ++++
Sbjct: 159 FSWTGNALSP-LDPETTRSS-----ELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
Score = 37.1 bits (85), Expect = 0.011
Identities = 35/251 (13%), Positives = 62/251 (24%), Gaps = 65/251 (25%)
Query: 51 YTVTKPKSIENLRERGH-AHFECKLEP-----VTDSNLKVEWFKNGRPVTIG-------- 96
Y + KS+ G C + L V WF++G
Sbjct: 2 YELQVQKSVTVQE--GLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNP 59
Query: 97 ---------HRFRPIHDF--GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGS 145
RFR + D +L I D ED+G+Y R
Sbjct: 60 DRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDV------------ 107
Query: 146 AGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFEC 205
+ Y ++K + IE+ G+ C
Sbjct: 108 --------------KYSYQQNKLNLEVTALIEKPDIHFLEPLE--------SGRPTRLSC 145
Query: 206 RLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265
L + + + + T ++ L + + TC+
Sbjct: 146 SLPGSCEAGPPLTFSWTGNALSPLDPETTRSS----ELTLTPRPEDHGTNLTCQMKRQGA 201
Query: 266 QAVTSGNLLVH 276
Q T + ++
Sbjct: 202 QVTTERTVQLN 212
Score = 36.4 bits (83), Expect = 0.023
Identities = 34/239 (14%), Positives = 55/239 (23%), Gaps = 73/239 (30%)
Query: 197 EGQRAHFECRLIP-----VSDNTMKVEWFHNN-----------------VPIKSGSRFTE 234
EG C S + V WF + V ++ RF
Sbjct: 14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73
Query: 235 TNNF--GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
+ +L I ED+G Y R
Sbjct: 74 LGDVQKKNCSLSIGDARMEDTGSYFFRVER------------------------------ 103
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI------PVGDSK 346
GR + S ++ ++ DIH E + RL
Sbjct: 104 -------GRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPP 156
Query: 347 LKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
L +W N + + L + TC+ + + T T+
Sbjct: 157 LTFSWTGNALSPLDPETTRS------SELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV 209
Score = 31.0 bits (69), Expect = 1.2
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 8/92 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPV--GDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ + ++ +E G+ SC L P L W N D +
Sbjct: 123 LIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSE---- 178
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593
+ L+ + C+ + T +
Sbjct: 179 --LTLTPRPEDHGTNLTCQMKRQGAQVTTERT 208
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 43.3 bits (101), Expect = 1e-04
Identities = 34/244 (13%), Positives = 56/244 (22%), Gaps = 69/244 (28%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKP----------------LEDSSRITTKHDF 559
V GK+ C D + +EWF ++ +
Sbjct: 12 VMRGKSVILDCTPTGTHDHYM-LEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPP 70
Query: 560 GYVAMD----LSHVRAEDEGIYICKA-TNALGEAVTTASMKIKTKAGLQLETQHPEGLKK 614
+ L+ + DE Y+C A G A TA + +
Sbjct: 71 YQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV------------------ 112
Query: 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV 674
+P E + S + + C G+P + W+
Sbjct: 113 ---FAKP------------EATEVSPNKGTLSVMEDSAQEIATC-NSRNGNPAPKITWYR 156
Query: 675 NGVELK----------MGSRFHVQHDFGYVTLDITKCVPA---DSGVYMCKAINRAGEAV 721
NG L+ M SR + + C A E
Sbjct: 157 NGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGR 216
Query: 722 SSTS 725
Sbjct: 217 HGRL 220
Score = 38.6 bits (89), Expect = 0.004
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 14/101 (13%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ + +E+ +C G+P K+ W+RN + LE + +
Sbjct: 119 TEVSPNKGTLSVMEDSAQEIATCN-SRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177
Query: 564 MD-------------LSHVRAEDEGIYICKATNALGEAVTT 591
+ L + + + + C A +L E
Sbjct: 178 VREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHG 218
Score = 32.1 bits (72), Expect = 0.50
Identities = 34/242 (14%), Positives = 57/242 (23%), Gaps = 69/242 (28%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWF-------------------HNNVPIKSGSRFTETNN 237
G+ +C D+ M +EWF V + +
Sbjct: 14 RGKSVILDCTPTGTHDHYM-LEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQ 72
Query: 238 FGFVA-LDIMQCLPEDSGVYTCRA-VNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
L + + D Y C A G A + L V +K
Sbjct: 73 LDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPE--------------- 117
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
A + + V E+ A G+ K+TW RNG
Sbjct: 118 -------------------ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNG 158
Query: 356 VPIQASNRVSTMHDFGYVA-------------LNFKYTYPEDSGTYTCRAVNELGEAVTS 402
++ ++ L + + ++ C A L E
Sbjct: 159 QRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHG 218
Query: 403 ST 404
Sbjct: 219 RL 220
Score = 29.0 bits (64), Expect = 5.5
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 25/112 (22%)
Query: 52 TVTKPKSIENLRERGH-AHFECKLEPVTDSNLKVEWFK---NGRPVTIGHRFRPIHDFGY 107
++ P +E RG +C T + +EWF +G + +
Sbjct: 3 RLSVPPLVE--VMRGKSVILDCTPTG-THDHYMLEWFLTDRSGARPRLASAEMQGSELQV 59
Query: 108 VA-----------------LDIIDTIPEDSGTYTCRA-VNLVGFAEVQATLQ 141
L + + D Y C G AE A L
Sbjct: 60 TMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLN 111
Score = 29.0 bits (64), Expect = 6.1
Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 22/103 (21%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWF--------------------VNGVELKMGSRFH 686
E+M G+S DC D M EWF + R
Sbjct: 11 EVMRGKSVILDCTPTGTHDHYM-LEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSP 69
Query: 687 VQHDFGYVTLDITKCVPADSGVYMCKA-INRAGEAVSSTSLKV 728
L + + D Y+C AG A ++ L V
Sbjct: 70 PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 42.8 bits (100), Expect = 2e-04
Identities = 28/251 (11%), Positives = 62/251 (24%), Gaps = 70/251 (27%)
Query: 516 VEEGKNAHFSCRLIPVGDPT-LKVEWFRN-----------------EKPLEDSSRITTKH 557
G++A C L P ++++W + + R +
Sbjct: 16 AMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR 75
Query: 558 DF---GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKK 614
D G A+ + +V A D G Y+C +
Sbjct: 76 DGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKAL----------------------- 112
Query: 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF- 673
+E + + + + + H +CR P + +W
Sbjct: 113 ---VELKVAALGSDLHVDVKGY-------------KDGGIHLECRSTG-WYPQPQIQWSN 155
Query: 674 VNGVELKMGSRFHVQHDFGYVTLDITKCVP-ADSGVYMCKAINRAGEAVSSTSLKVKSKS 732
G + V G + + + + C + + S+
Sbjct: 156 NKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASI------ 209
Query: 733 DIVSESLQPDA 743
+++ A
Sbjct: 210 -SIADPFFRSA 219
Score = 41.2 bits (96), Expect = 6e-04
Identities = 36/234 (15%), Positives = 64/234 (27%), Gaps = 65/234 (27%)
Query: 198 GQRAHFECRLIPVSD-NTMKVEWFHNNVPI-----KSG---------------SRFTETN 236
G+ A C L P TM+++W +++ G S +
Sbjct: 19 GEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGI 78
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQ 296
G AL I DSG Y C Q + ++L L+
Sbjct: 79 TAGKAALRIHNVTASDSGKYLCY---------------------FQDGDFYEKALVELKV 117
Query: 297 LEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS-KLKVTWLRN- 354
+ + D+ ++ H E R G + ++ W N
Sbjct: 118 A------------------ALGSDLHVDVKGYKDGGIHLECR--STGWYPQPQIQWSNNK 157
Query: 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDS-GTYTCRAVNELGEAVTSSTLFV 407
G I G A+ S +C + L ++++ +
Sbjct: 158 GENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211
Score = 38.5 bits (89), Expect = 0.005
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 23/112 (20%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTD-SNLKVEWFKNGRPVTIGHRFRPIHDF----- 105
+V P A C L P ++++W + + + + +
Sbjct: 6 SVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVV-NVYADGKEVEDRQS 64
Query: 106 ----------------GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
G AL I + DSG Y C + + + L+
Sbjct: 65 APYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELK 116
Score = 33.1 bits (75), Expect = 0.25
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 649 MEGQSAHYDCRVVPVGDPT-MRFEWF-----------VNGVELKMG---------SRFHV 687
M G+ A C + P M +W +G E++ S
Sbjct: 17 MVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRD 76
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKI 747
G L I +DSG Y+C + + LKV + + ++ I
Sbjct: 77 GITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGI 136
Query: 748 QLK 750
L+
Sbjct: 137 HLE 139
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 41.8 bits (98), Expect = 2e-04
Identities = 30/223 (13%), Positives = 55/223 (24%), Gaps = 68/223 (30%)
Query: 516 VEEGKNAHFSCRLIPV----------GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
G N + P+ +E+F N K S + D
Sbjct: 11 AITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGA 70
Query: 566 L--SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
L +V ED G Y + + T KI ++ + + +P
Sbjct: 71 LRIYNVSKEDRGDYYMRMLHE-----TEDQWKIT--------------MEVYEMVSKP-- 109
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
E +A C V+ D + + L+
Sbjct: 110 ----------------------MIYWECSNATLTCEVLEGTDVE--LKLYQGKEHLRSLR 145
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726
+ ++ + CKA+NR + +
Sbjct: 146 Q-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 177
Score = 41.8 bits (98), Expect = 2e-04
Identities = 32/199 (16%), Positives = 55/199 (27%), Gaps = 67/199 (33%)
Query: 78 TDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV--ALDIIDTIPEDSGTYTCRAVNLVGFAE 135
T + +E+F NG+ F+ D AL I + ED G Y R ++
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLH------ 90
Query: 136 VQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKN--- 192
+ ++ E SK P+ N
Sbjct: 91 ----------------ETEDQWKITMEVYEMVSK--------------PMIYWECSNATL 120
Query: 193 -CEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPE 251
CE+ EG V ++ + ++S + T +
Sbjct: 121 TCEVLEGT---------DVE-----LKLYQGKEHLRSLRQKTMSYQ-----------WTN 155
Query: 252 DSGVYTCRAVNALGQAVTS 270
+ C+AVN + Q
Sbjct: 156 LRAPFKCKAVNRVSQESEM 174
Score = 37.9 bits (88), Expect = 0.005
Identities = 27/199 (13%), Positives = 50/199 (25%), Gaps = 64/199 (32%)
Query: 212 DNTMKVEWFHNNVPIKSGSRFTE--TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT 269
N +E+F N S F + + AL I ED G Y R ++ +
Sbjct: 38 TNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQW 96
Query: 270 SGNLLVH---SKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIH 326
+ V+ SK I E + +L+
Sbjct: 97 KITMEVYEMVSKPMIYWECSN-ATLT--------------------------------CE 123
Query: 327 VAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSG 386
V E + +++ + Y +
Sbjct: 124 VLEGTDVEL--------------KLYQGKEHLRSLRQ-----------KTMSYQWTNLRA 158
Query: 387 TYTCRAVNELGEAVTSSTL 405
+ C+AVN + + +
Sbjct: 159 PFKCKAVNRVSQESEMEVV 177
Score = 34.1 bits (78), Expect = 0.079
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+Y V+KP E +A C E + ++++++ ++ + +
Sbjct: 102 VYEMVSKPMIY---WECSNATLTC--EVLEGTDVELKLYQGKEHLRSLRQ---------- 146
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
+ + C+AVN V + C
Sbjct: 147 -KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
Score = 31.8 bits (72), Expect = 0.53
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 343 GDSKLKVTWLRNGVPI----QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNE 395
++ + + NG +RV G AL ED G Y R ++E
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLHE 91
Score = 31.8 bits (72), Expect = 0.59
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 664 GDPTMRFEWFVNGVELKMGSRFH--VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV 721
E+F NG + S F V D L I D G Y + ++ +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED-Q 95
Query: 722 SSTSLKVK---SKSDIVSES 738
+++V SK I E
Sbjct: 96 WKITMEVYEMVSKPMIYWEC 115
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 42.2 bits (98), Expect = 2e-04
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ +P+ +P + + AV G + +CRL D V+W + L + D G
Sbjct: 4 QVKPLQVEPPEPVVAVALGASRQLTCRLA-CADRGASVQWRGLDTSLG-----AVQSDTG 57
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + + G +C + T + +
Sbjct: 58 RSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
Score = 33.3 bits (75), Expect = 0.19
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 6/112 (5%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH 689
+ KP+ + + G S CR+ D +W L VQ
Sbjct: 1 QSLQVKPLQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG-----AVQS 54
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
D G L + + +G +C + L V + + ++ S
Sbjct: 55 DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAA 106
Score = 31.4 bits (70), Expect = 0.90
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 194 EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDS 253
+ G CRL +D V+W + + + T + + +
Sbjct: 18 AVALGASRQLTCRLA-CADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASL-----SAA 71
Query: 254 GVYTCRAVNALGQAVTSGNLLVH 276
G C + LLV+
Sbjct: 72 GTRVCVGSCGGRTFQHTVQLLVY 94
Score = 28.3 bits (62), Expect = 7.3
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 5/59 (8%)
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
V W + + D G L + +GT C + L V
Sbjct: 40 VQWRGLDTSLG-----AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 41.9 bits (98), Expect = 2e-04
Identities = 30/217 (13%), Positives = 55/217 (25%), Gaps = 49/217 (22%)
Query: 516 VEEGKNAHFSCRLIPVGDPT--LKVEWFRNEKP--LEDSSRITTKHDF---------GYV 562
E + A SC + ++ W + +K S + ++ +
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
++ + +R DEG Y C + + K + A + L + I + E P
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKD-----AFKREHLAEVTLSVKADFPTPSISDFEIP- 119
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
C G P W NG EL
Sbjct: 120 ---------------------------TSNIRRIICSTSG-GFPEPHLSWLENGEELNAI 151
Query: 683 SRFHVQH-DFGYVTLDITKCVPADS-GVYMCKAINRA 717
+ Q + + + +MC
Sbjct: 152 NTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGH 188
Score = 37.7 bits (87), Expect = 0.006
Identities = 23/223 (10%), Positives = 53/223 (23%), Gaps = 56/223 (25%)
Query: 68 AHFECKLEPVTDS--NLKVEWFKNGRPVT--IGHRFRPIHDF---------GYVALDIID 114
A C + ++ W K + V + ++ +++ I+
Sbjct: 12 ATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILA 71
Query: 115 TIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGE 174
P D GTY C + E + +
Sbjct: 72 LRPSDEGTYEC----------------------------------VVLKYEKDAFKREHL 97
Query: 175 YIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN---TMKVEWFHNNVPIKSGSR 231
+ +A T S+ + EI C + + W N + + +
Sbjct: 98 AEVTLSVKADFPTPSISDFEIPTSNIRRIICS----TSGGFPEPHLSWLENGEELNAINT 153
Query: 232 FTETNNFG--FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGN 272
+ + + + + C + + N
Sbjct: 154 TVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN 196
Score = 31.9 bits (72), Expect = 0.59
Identities = 31/233 (13%), Positives = 61/233 (26%), Gaps = 67/233 (28%)
Query: 196 KEGQRAHFECRLIPVSDNTMK--VEWFHNNVPI--------------KSGSRFTETNNFG 239
+ + A C + + + W + K+ + F TNN
Sbjct: 7 EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL- 65
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
++ I+ P D G Y C + E+
Sbjct: 66 --SIVILALRPSDEGTYECVV----------------------------------LKYEK 89
Query: 300 GRYQRTSIIEDTVSQAPVFTQP-MRDIHVAENQAAHFEARLIPVGDSKLK--VTWLRNGV 356
++R + E T+S F P + D + + + ++WL NG
Sbjct: 90 DAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICS---TSGGFPEPHLSWLENGE 146
Query: 357 PIQASNRVSTMHDFG-----YVALNFKYTYPEDSGTYTCRAVNELGEAVTSST 404
+ A N + L+F + ++ C +
Sbjct: 147 ELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQTFN 196
Score = 28.4 bits (63), Expect = 7.5
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 15/92 (16%)
Query: 649 MEGQSAHYDCRVVPVGDPTM--RFEW---------FVNGVELKMGS---RFHVQHDFGYV 694
+ A C + R W ++G R +
Sbjct: 7 EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT-NNL 65
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726
++ I P+D G Y C + +A L
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHL 97
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 40.7 bits (95), Expect = 3e-04
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 21/86 (24%)
Query: 516 VEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPL-----------------EDSSRITTKH 557
G A CR+ P + T ++V W+R+ E R
Sbjct: 18 ALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLK 77
Query: 558 D---FGYVAMDLSHVRAEDEGIYICK 580
+ G VA+ + +VR DEG Y C
Sbjct: 78 ESIGEGKVALRIQNVRFSDEGGYTCF 103
Score = 38.0 bits (88), Expect = 0.002
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 68 AHFECKLEPVTD-SNLKVEWFKNGRPVTI--------------------GHRFRPIHDFG 106
A C++ P + + ++V W+++ + + G
Sbjct: 24 AELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEG 83
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
VAL I + D G YTC + E L+
Sbjct: 84 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 118
Score = 35.7 bits (82), Expect = 0.017
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 24/117 (20%)
Query: 198 GQRAHFECRLIP-VSDNTMKVEWFHNNVP-----IKSG---------------SRFTETN 236
G A CR+ P + M+V W+ + ++G E+
Sbjct: 21 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 80
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH---SKKSIQTETQHGES 290
G VAL I D G YTC + Q + L V + H
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGRSRSHHHH 137
Score = 33.4 bits (76), Expect = 0.12
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 21/100 (21%)
Query: 651 GQSAHYDCRVVPVGDPT-MRFEWF-----------VNGVELKMG---------SRFHVQH 689
G A CR+ P + T M W+ NG +
Sbjct: 21 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 80
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
G V L I +D G Y C + + + ++ LKV+
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
Score = 29.5 bits (66), Expect = 2.0
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 21/111 (18%)
Query: 319 TQPMRDIHVAENQAAHFEARLIPVGD-SKLKVTWLRNGVPI-----------------QA 360
P I A R+ P + + ++V W R+ +
Sbjct: 10 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 69
Query: 361 SNRVSTMHD---FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
R + + G VAL + D G YTC + + + L VE
Sbjct: 70 RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 40.3 bits (94), Expect = 3e-04
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 19/84 (22%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL---------EDSSRITTKHDFGY----- 561
G+ C + + W + P D +RI ++ Y
Sbjct: 8 GFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGK 67
Query: 562 -----VAMDLSHVRAEDEGIYICK 580
V++ +S+ D G+Y C+
Sbjct: 68 VQFGEVSLTISNTNRGDSGVYCCR 91
Score = 37.2 bits (86), Expect = 0.003
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 19/82 (23%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPI-----------------KSGSRFTETNNF- 238
GQ C + S + + W + P + +++T
Sbjct: 10 LGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQ 69
Query: 239 -GFVALDIMQCLPEDSGVYTCR 259
G V+L I DSGVY CR
Sbjct: 70 FGEVSLTISNTNRGDSGVYCCR 91
Score = 36.1 bits (83), Expect = 0.009
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 19/74 (25%)
Query: 72 CKLEPVTDSNLKVEWFK---------------NGRPVTIGH--RFRPIHDF--GYVALDI 112
C + S + W K +G + ++ + G V+L I
Sbjct: 18 CHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTI 77
Query: 113 IDTIPEDSGTYTCR 126
+T DSG Y CR
Sbjct: 78 SNTNRGDSGVYCCR 91
Score = 34.2 bits (78), Expect = 0.041
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 20/89 (22%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRFEWF---------------VNG--VELKMGSRFHVQHDF 691
GQ C + W +G + + +++ +
Sbjct: 9 FLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKV 68
Query: 692 --GYVTLDITKCVPADSGVYMCKAINRAG 718
G V+L I+ DSGVY C+ I G
Sbjct: 69 QFGEVSLTISNTNRGDSGVYCCR-IEVPG 96
Score = 31.8 bits (72), Expect = 0.27
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 19/67 (28%)
Query: 344 DSKLKVTWLRNGVPI-----------------QASNRVSTMHDF--GYVALNFKYTYPED 384
S+ + W + P + S + + + G V+L T D
Sbjct: 25 QSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGD 84
Query: 385 SGTYTCR 391
SG Y CR
Sbjct: 85 SGVYCCR 91
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 43.0 bits (101), Expect = 3e-04
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 11/120 (9%)
Query: 473 QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG 532
HP K+ K + VF P + D + +C + V
Sbjct: 199 AHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVV--VD 256
Query: 533 ----DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS-----HVRAEDEGIYICKATN 583
DP ++ WF + + + + F +S H + + C+ +
Sbjct: 257 ISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNS 316
Score = 38.4 bits (89), Expect = 0.009
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 9/120 (7%)
Query: 607 QHPEGLKKIQELEQPAS--PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPV- 663
HP K+ + P P +F ++ + C VV +
Sbjct: 199 AHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDIS 258
Query: 664 -GDPTMRFEWFVNGVELKMGSRFHVQHDFG-----YVTLDITKCVPADSGVYMCKAINRA 717
DP ++F WFV+ VE+ + F L I + + C+ + A
Sbjct: 259 KDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAA 318
Score = 30.7 bits (69), Expect = 2.3
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 211 SDNTMKVEWFHNNVPIKSGSRFTETNNFG-----FVALDIMQCLPEDSGVYTCR 259
D ++ WF +NV + + F AL IM + + CR
Sbjct: 260 DDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCR 313
Score = 30.3 bits (68), Expect = 2.9
Identities = 22/191 (11%), Positives = 44/191 (23%), Gaps = 41/191 (21%)
Query: 56 PKSIENLRERGHAHFECKLEPVT--DSNLKVEWFKNGRPVTIGHRFRPIHDFG-----YV 108
PK + L C + ++ D ++ WF + V F
Sbjct: 236 PKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVS 295
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
AL I+ + + CR +
Sbjct: 296 ALPIMHQDWLNGKEFKCRV----------------------------------NSAAFPA 321
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
++ + +AP T E + C + + VEW + ++
Sbjct: 322 PIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPEN 381
Query: 229 GSRFTETNNFG 239
+
Sbjct: 382 YKNTQPIMDTD 392
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 40.2 bits (93), Expect = 5e-04
Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 15/125 (12%)
Query: 616 QELEQPASPMPQEP---ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEW 672
Q ++ P + +Q T ++ G + C+V D +W
Sbjct: 15 QHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS--SLQW 72
Query: 673 --------FVNGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723
+ +R + +++ I+ AD G Y C I +
Sbjct: 73 SNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS-IFTMPVRTAK 131
Query: 724 TSLKV 728
+ + V
Sbjct: 132 SLVTV 136
Score = 39.0 bits (90), Expect = 0.001
Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 12/119 (10%)
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH---- 221
D + + + + + G +C++ D+++ +W +
Sbjct: 21 DLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSL--QWSNPAQQ 78
Query: 222 ----NNVPIKSGSRFT-ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+R T+ +++ I D G YTC + + + V
Sbjct: 79 TLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS-IFTMPVRTAKSLVTV 136
Score = 33.6 bits (76), Expect = 0.10
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 12/123 (9%)
Query: 466 GTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFS 525
G+ + +T K + D + + + + V G
Sbjct: 1 GSGMKETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDE-TVVAGGTVVLK 59
Query: 526 CRLIPVGDPTLKVEWFR--------NEKPLEDSSRIT-TKHDFGYVAMDLSHVRAEDEGI 576
C++ D + ++W EK +RI +++ +S+V DEG
Sbjct: 60 CQVKDHEDSS--LQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGE 117
Query: 577 YIC 579
Y C
Sbjct: 118 YTC 120
Score = 33.2 bits (75), Expect = 0.11
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 12/117 (10%)
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR------ 353
G + D D V + ++ DS + W
Sbjct: 23 GTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSS--LQWSNPAQQTL 80
Query: 354 --NGVPIQASNRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
NR+ + ++++ D G YTC + + S + V
Sbjct: 81 YFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS-IFTMPVRTAKSLVTV 136
Score = 32.1 bits (72), Expect = 0.28
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 63 RERGHAHFECKLEPVTDSNLKVEWFK--------NGRPVTIGHRFRPIHD-FGYVALDII 113
G +C+++ DS ++W + +R + + +++ I
Sbjct: 51 VAGGTVVLKCQVKDHEDS--SLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISIS 108
Query: 114 DTIPEDSGTYTC 125
+ D G YTC
Sbjct: 109 NVALADEGEYTC 120
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 39.9 bits (93), Expect = 9e-04
Identities = 20/192 (10%), Positives = 44/192 (22%), Gaps = 58/192 (30%)
Query: 79 DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQA 138
+ E + + R D +L I + D Y + N+ +
Sbjct: 31 QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFL 90
Query: 139 TLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEG 198
+ S P+ N
Sbjct: 91 YVLEMVS-------------------------------------KPMIYWECSNA----- 108
Query: 199 QRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTC 258
C ++ +D ++ + ++S + T + + + C
Sbjct: 109 ---TLTCEVLEGTDVE--LKLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKC 152
Query: 259 RAVNALGQAVTS 270
+AVN + Q
Sbjct: 153 KAVNRVSQESEM 164
Score = 39.9 bits (93), Expect = 0.001
Identities = 20/219 (9%), Positives = 48/219 (21%), Gaps = 70/219 (31%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPI--------KSGSRFTE--TNNFGFVALDIM 246
F P + +V W + ++ S F + +L I
Sbjct: 9 VYGNVTFHV---PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIY 65
Query: 247 QCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTS 306
D Y + N L V S + + ++ +G
Sbjct: 66 NLTSSDEDEYEMESPNITDT--MKFFLYVLEMVSKPMIYWECSNATLTCEVLEG------ 117
Query: 307 IIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVST 366
+ +++ + +++ +
Sbjct: 118 --------------------------------------TDVELKLYQGKEHLRSLRQ--- 136
Query: 367 MHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
Y + + C+AVN + + +
Sbjct: 137 --------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 167
Score = 37.6 bits (87), Expect = 0.006
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 19/105 (18%)
Query: 41 NAKKKKNF---IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGH 97
N F + V+KP +A C++ TD LK ++ +
Sbjct: 81 NITDTMKFFLYVLEMVSKPMIYWEC---SNATLTCEVLEGTDVELK--LYQGKEHLRSLR 135
Query: 98 RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
+ + + C+AVN V + C
Sbjct: 136 Q-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
Score = 36.4 bits (84), Expect = 0.015
Identities = 28/221 (12%), Positives = 56/221 (25%), Gaps = 70/221 (31%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPL---EDSSRITTKHDFGYVAMD-------LS 567
N F P P +V W + + + E+S V +D +
Sbjct: 9 VYGNVTFHV---PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIY 65
Query: 568 HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQ 627
++ + DE Y ++ N + LE + P
Sbjct: 66 NLTSSDEDEYEMESPNITDTMKFF-----------------------LYVLEMVSKP--- 99
Query: 628 EPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV 687
E +A C V+ D ++ + L+ + +
Sbjct: 100 ------------------MIYWECSNATLTCEVLEGTDVELK--LYQGKEHLRSLRQKTM 139
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ + + CKA+NR + +
Sbjct: 140 SYQWT-----------NLRAPFKCKAVNRVSQESEMEVVNC 169
Score = 35.3 bits (81), Expect = 0.037
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 19/101 (18%)
Query: 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF--------VNGVELKMGSRFH--V 687
F+Q + G + + P P W + E + S F V
Sbjct: 1 FSQQIYGV----VYGNVTFHV---PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRV 53
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
D +L I +D Y ++ N L V
Sbjct: 54 YLDTVSGSLTIYNLTSSDEDEYEMESPNITDT--MKFFLYV 92
Score = 34.5 bits (79), Expect = 0.061
Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 17/87 (19%)
Query: 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI------------QASNRVSTMHDFG 371
I+ F +P +V W + + NRV G
Sbjct: 4 QIYGVVYGNVTFH---VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGE 398
+L D Y + N
Sbjct: 61 --SLTIYNLTSSDEDEYEMESPNITDT 85
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 38.8 bits (90), Expect = 0.001
Identities = 11/84 (13%), Positives = 21/84 (25%), Gaps = 19/84 (22%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE---------DSSRITTKHDFGY----- 561
G C + + W E + +T + + Y
Sbjct: 9 GLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGN 68
Query: 562 -----VAMDLSHVRAEDEGIYICK 580
V++ + + D G Y C
Sbjct: 69 ISEGNVSLTIENTVVGDGGPYCCV 92
Score = 37.3 bits (86), Expect = 0.003
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 21/90 (23%)
Query: 72 CKLEPVTDSNLKVEWFK---------------NGRPVTIGH--RFRPIHDF--GYVALDI 112
C + + W NG VT R++ + G V+L I
Sbjct: 19 CIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTI 78
Query: 113 IDTIPEDSGTYTCRAVNLVG-FAEVQATLQ 141
+T+ D G Y C V + G F V L+
Sbjct: 79 ENTVVGDGGPYCCV-VEIPGAFHFVDYMLE 107
Score = 35.7 bits (82), Expect = 0.010
Identities = 14/82 (17%), Positives = 19/82 (23%), Gaps = 19/82 (23%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPI---------KSGSRFTETNN---------- 237
G C + + W +G T N
Sbjct: 11 AGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNIS 70
Query: 238 FGFVALDIMQCLPEDSGVYTCR 259
G V+L I + D G Y C
Sbjct: 71 EGNVSLTIENTVVGDGGPYCCV 92
Score = 33.4 bits (76), Expect = 0.075
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 19/83 (22%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRFEWFV-----------------NGVELKMGSRFHVQHDF 691
+ G C + W + V + SR+ ++ +
Sbjct: 10 LAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNI 69
Query: 692 --GYVTLDITKCVPADSGVYMCK 712
G V+L I V D G Y C
Sbjct: 70 SEGNVSLTIENTVVGDGGPYCCV 92
Score = 31.1 bits (70), Expect = 0.49
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 27/91 (29%)
Query: 344 DSKLKVTWLRNGVPI-----------------QASNRVSTMHDF--GYVALNFKYTYPED 384
+ + W Q ++R + G V+L + T D
Sbjct: 26 GGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGD 85
Query: 385 SGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
G Y C V F L++
Sbjct: 86 GGPYCCV--------VEIPGAFHFVDYMLEV 108
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 41.7 bits (96), Expect = 0.001
Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 8/140 (5%)
Query: 125 CRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ-A 183
L + C + + T + + + + +
Sbjct: 474 VVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVCP 533
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS-GSRFTETNNFGFVA 242
S + K G A +C N +V W N +K+ ++ +
Sbjct: 534 DKSKGSYRQHFFKHGGTAELKC---SQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLL- 589
Query: 243 LDIMQCLPEDSGVYTCRAVN 262
I DSGVY C +
Sbjct: 590 --IFNLSEGDSGVYQCLSEE 607
Score = 38.2 bits (87), Expect = 0.012
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 65 RGHAHFECKLEPVTDSNL-KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTY 123
G A +C + SNL +V W + + L I + DSG Y
Sbjct: 548 GGTAELKCSQK----SNLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVY 601
Query: 124 TCRAVNLVGFAEVQATL 140
C + + +
Sbjct: 602 QCLSEER-VKNKTVFQV 617
Score = 35.5 bits (80), Expect = 0.073
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 348 KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+V W ++A + + L DSG Y C + E + T +
Sbjct: 563 RVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSE-ERVKNKTVFQVVA 619
Query: 408 ESKASLQLDTQ 418
+ +++ +
Sbjct: 620 KHVLEVKVVPK 630
Score = 34.0 bits (76), Expect = 0.23
Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 11/118 (9%)
Query: 521 NAHFSCRLIPVGDPTLKVEWFRNEKPLE-DSSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579
A C +V W L+ +S + + + ++ D G+Y C
Sbjct: 550 TAELKCSQKS---NLARVFWKFQNGVLKAESPKYGLMGRKNLL---IFNLSEGDSGVYQC 603
Query: 580 KATNALGEAVTTASMKIKTKAGLQL---ETQHPEGLKKIQELEQPASPMPQEPERQYE 634
+ + T + K +++ P E + A+ + + +
Sbjct: 604 LSEER-VKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTKHHH 660
Score = 31.3 bits (69), Expect = 1.7
Identities = 19/88 (21%), Positives = 24/88 (27%), Gaps = 7/88 (7%)
Query: 662 PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG--- 718
R W LK S + L I DSGVY C + R
Sbjct: 556 SQKSNLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERVKNKT 613
Query: 719 --EAVSSTSLKVKSKSDIVSESLQPDAW 744
+ V+ L+VK V
Sbjct: 614 VFQVVAKHVLEVKVVPKPVVAPTLSVVQ 641
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 40.2 bits (93), Expect = 0.002
Identities = 13/92 (14%), Positives = 22/92 (23%), Gaps = 5/92 (5%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
A ++ P + G + +C + V W +
Sbjct: 2 APRRCPAQEVARGVLT-SLPGDSVTLTCP-GVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590
+ L V+ D G Y C V
Sbjct: 60 RRLL---LRSVQLHDSGNYSCYRAGRPAGTVH 88
Score = 39.1 bits (90), Expect = 0.005
Identities = 16/94 (17%), Positives = 24/94 (25%), Gaps = 7/94 (7%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P + G C ++ V W S
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCP-GVEPEDNATVHWVLRKPAAGSHPSRWAGMG---RR 61
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L + DSG Y+C G+ + +LLV
Sbjct: 62 LLLRSVQLHDSGNYSC---YRAGRPAGTVHLLVD 92
Score = 36.8 bits (84), Expect = 0.021
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
+ V W+ + L + DSG Y+C G +
Sbjct: 33 PEDNATVHWVLRKPAAGSHPSRWAGMG---RRLLLRSVQLHDSGNYSCYR---AGRPAGT 86
Query: 403 STLFVE 408
L V+
Sbjct: 87 VHLLVD 92
Score = 35.2 bits (80), Expect = 0.077
Identities = 18/128 (14%), Positives = 29/128 (22%), Gaps = 18/128 (14%)
Query: 79 DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN--------L 130
+ N V W L + DSG Y+C L
Sbjct: 34 EDNATVHWVLRKPAAGSHPSRWAGMG---RRLLLRSVQLHDSGNYSCYRAGRPAGTVHLL 90
Query: 131 VGFAEVQATLQCRGSAGILTST-----QNETGLEQIQYLEDKSKYQRGEYIEETTTQAPI 185
V + L C + + ++ L L + + E+
Sbjct: 91 VDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLL--VRKFQNSPAEDFQEPCQY 148
Query: 186 FTTSLKNC 193
S K
Sbjct: 149 SQESQKFS 156
Score = 33.7 bits (76), Expect = 0.21
Identities = 17/85 (20%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP 703
G + G S C V + W + L +
Sbjct: 14 GVLTSLPGDSVTLTCPGV-EPEDNATVHWVLRKPAAGSHPSRWAGMG---RRLLLRSVQL 69
Query: 704 ADSGVYMCKAINRAGEAVSSTSLKV 728
DSG Y C RAG + L V
Sbjct: 70 HDSGNYSC---YRAGRPAGTVHLLV 91
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 21/86 (24%)
Query: 519 GKNAHFSCRLIPVGDPTLK---VEWFRNEKP-------------LEDSSRITTKHD-FGY 561
G + C L + W R+ + +S R+ G
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 562 VAMD----LSHVRAEDEGIYICKATN 583
+ + +R EDEG Y C
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVT 100
Score = 29.8 bits (67), Expect = 1.4
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 18/73 (24%)
Query: 75 EPVTDSNLKVEWFKNGRP--VTIGH-RFRPIHDFGY---------------VALDIIDTI 116
++ W ++G + + H P + +L +
Sbjct: 28 NMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLR 87
Query: 117 PEDSGTYTCRAVN 129
ED G YTC V
Sbjct: 88 VEDEGNYTCLFVT 100
Score = 29.0 bits (65), Expect = 2.3
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 22/103 (21%)
Query: 198 GQRAHFECRLI---PVSDNTMKVEWFHN----NVPI---KSGSRFTETNNFGFVA----- 242
G C L + ++ W + ++ + G ++E+ FVA
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 243 ------LDIMQCLPEDSGVYTCRAVNALGQAVTSG-NLLVHSK 278
L + ED G YTC V + + L V +K
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 37.6 bits (87), Expect = 0.002
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 20/85 (23%)
Query: 516 VEEGKNAHFSCRL-IPVGDPTLKVEWFRNEKP-----------------LEDSSRITTKH 557
VE GKNA+ C +P + + W + P + SSR K
Sbjct: 6 VEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKG 65
Query: 558 DF--GYVAMDLSHVRAEDEGIYICK 580
D G V++ + +V +D G Y C+
Sbjct: 66 DLNKGDVSLIIKNVTLDDHGTYCCR 90
Score = 36.1 bits (83), Expect = 0.007
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 20/84 (23%)
Query: 196 KEGQRAHFECRL-IPVSDNTMKVEWF-----------------HNNVPIKSGSRFTETNN 237
+ G+ A+ C +P S + + W NV + SR+ +
Sbjct: 7 EVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGD 66
Query: 238 F--GFVALDIMQCLPEDSGVYTCR 259
G V+L I +D G Y CR
Sbjct: 67 LNKGDVSLIIKNVTLDDHGTYCCR 90
Score = 34.9 bits (80), Expect = 0.016
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 20/79 (25%)
Query: 68 AHFECKLE-PVTDSNLKVEWFK---------------NGRPVTIGH--RFRPIHDF--GY 107
A+ C P + + + + W K + R VT R++ D G
Sbjct: 12 AYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGD 71
Query: 108 VALDIIDTIPEDSGTYTCR 126
V+L I + +D GTY CR
Sbjct: 72 VSLIIKNVTLDDHGTYCCR 90
Score = 34.1 bits (78), Expect = 0.036
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 24/104 (23%)
Query: 649 MEGQSAHYDCRV-VPVGDPTMRFEWFV-----------------NGVELKMGSRFHVQHD 690
G++A+ C +P + W V + SR+ ++ D
Sbjct: 7 EVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGD 66
Query: 691 F--GYVTLDITKCVPADSGVYMCKAINRAG---EAVSSTSLKVK 729
G V+L I D G Y C+ I G + L +K
Sbjct: 67 LNKGDVSLIIKNVTLDDHGTYCCR-IQFPGLMNDKKLELKLDIK 109
Score = 29.5 bits (66), Expect = 1.4
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 27/94 (28%)
Query: 341 PVGDSKLKVTWLRNGVPI-----------------QASNRVSTMHDF--GYVALNFKYTY 381
P + + + W + P Q S+R D G V+L K
Sbjct: 21 PTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVT 80
Query: 382 PEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
+D GTY CR + L + K L+L
Sbjct: 81 LDDHGTYCCR--------IQFPGLMNDKKLELKL 106
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 39.5 bits (92), Expect = 0.003
Identities = 38/228 (16%), Positives = 69/228 (30%), Gaps = 57/228 (25%)
Query: 515 AVEEGKNAHFSCR---LIPVGDPTLKVEWFRN-EKPLE-------------DSSRITTKH 557
+V G++A C LIPVG ++WFR E + +TK
Sbjct: 14 SVAAGESAILHCTVTSLIPVGP----IQWFRGAGPARELIYNQKEGHFPRVTTVSESTKR 69
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
+ ++ +S++ D G Y C + + K+ AG +L +
Sbjct: 70 ENMDFSISISNITPADAGTYYCVKFRK-----GSPDTEFKSGAGTELSVRAK-------- 116
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV 677
P++P+ P + + + C + +WF NG
Sbjct: 117 ---PSAPVVSGP---------------AARATPQHTVSFTCESHGFSPRDITLKWFKNGN 158
Query: 678 ELKMGSRFH--VQHDFGYV---TLDITKCVPADSGVYMCKAINRAGEA 720
EL V Y T + +C+ + +
Sbjct: 159 ELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQG 206
Score = 39.1 bits (91), Expect = 0.004
Identities = 33/246 (13%), Positives = 59/246 (23%), Gaps = 47/246 (19%)
Query: 495 VDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT 554
+ A PV + P F+C + ++WF+N L D
Sbjct: 111 LSVRAKPSAPVVSGPAA---RATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNV 167
Query: 555 --TKHDFGYVA---MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHP 609
Y + R + IC+ + T
Sbjct: 168 DPVGESVSYSIHSTAKVVLTREDVHSQVICEVAH---------------------VTLQG 206
Query: 610 EGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR 669
+ L+ L + P L + + C+V ++
Sbjct: 207 DPLRGTANLSETIRVPPT-------------LEVTQQPVRAENQVNVTCQVRKFYPQRLQ 253
Query: 670 FEWFVNGVELKMGSRFHVQHDFG-----YVTLDITKCVPADSGVYMCKAINRAGEAVSST 724
W NG + + V + L + D C+ + AVS +
Sbjct: 254 LTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKS 313
Query: 725 SLKVKS 730
S
Sbjct: 314 HDLKVS 319
Score = 38.4 bits (89), Expect = 0.007
Identities = 30/275 (10%), Positives = 68/275 (24%), Gaps = 52/275 (18%)
Query: 24 SYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLK 83
+ + S + V+ P + + F C+ + ++
Sbjct: 93 KFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARA--TPQHTVSFTCESHGFSPRDIT 150
Query: 84 VEWFKNGRPVTIGHRFRP--IHDFGYVA---LDIIDTIPEDSGTYTCRAVNLVGFAEVQA 138
++WFKNG ++ Y ++ T + C +
Sbjct: 151 LKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAH--------- 201
Query: 139 TLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEG 198
+ T T + ++
Sbjct: 202 --------------------------VTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAE 235
Query: 199 QRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG--FVA---LDIMQCLPEDS 253
+ + C++ +++ W N ++ + T T N + L + D
Sbjct: 236 NQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDD 295
Query: 254 GVYTCRAVN-ALGQAVTSGNLLVHSKKSIQTETQH 287
TC+ + S +L K S + H
Sbjct: 296 VKLTCQVEHDGQPAVSKSHDL----KVSTRHHHHH 326
Score = 28.7 bits (64), Expect = 8.7
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 8/115 (6%)
Query: 491 KRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS 550
R + + T + P + Q V + +C++ L++ W N
Sbjct: 209 LRGTANLSETIRVPPTLEVTQ--QPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTE 266
Query: 551 SRITTKHDFG--YVAM---DLSHVRAEDEGIYICKATN-ALGEAVTTASMKIKTK 599
+ T + Y M ++ D+ C+ + + +K+ T+
Sbjct: 267 TASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSTR 321
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 37.7 bits (87), Expect = 0.004
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDF--GYVALDIIDTIPEDSG 121
E+G F + E ++ SN KV + N + + G +++ D G + + + ED G
Sbjct: 51 EKGQVRFWMQAEKLS-SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 109
Query: 122 TYTCRAVNLVGFAEVQATL 140
TYT + + G A +TL
Sbjct: 110 TYTFQIQD--GKATGHSTL 126
Score = 34.6 bits (79), Expect = 0.039
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 534 PTLKVEWFRNEKPLEDSSRITTKHDF--GYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
KV + NEK + + + D G + M + ++ EDEG Y + + G+A
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQD--GKATGH 123
Query: 592 ASM 594
+++
Sbjct: 124 STL 126
Score = 33.4 bits (76), Expect = 0.11
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 666 PTMRFEWFVNGVELKMGSRFHVQHDF--GYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723
+ + N E+ G ++ + D G + + + K D G Y + + G+A
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQD--GKATGH 123
Query: 724 TSLKVKSKSDIVSESLQPDAWKKIQLKEAE 753
++L L D +KK+ KEAE
Sbjct: 124 STL-----------VLIGDVYKKL-QKEAE 141
Score = 29.6 bits (66), Expect = 2.4
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 182 QAPIF-TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTET--NNF 238
+ P T S EI E + F + +S N KV + N I G ++ N
Sbjct: 35 KFPTVPTKSELAVEILEKGQVRFWMQAEKLSSNA-KVSYIFNEKEIFEGPKYKMHIDRNT 93
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQ 286
G + + + + ED G YT + + ++ L+ K +Q E +
Sbjct: 94 GIIEMFMEKLQDEDEGTYTFQIQDGKATGHSTLVLIGDVYKKLQKEAE 141
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 36.6 bits (85), Expect = 0.004
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 82 LKVEWFKNGRPVTIGHR--FRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ +E KNG + + + + + PE S Y+C
Sbjct: 35 ISIELLKNGEVIADAQQTDLAFEKGWQFHLTKSVSFKPEKSDEYSCS 81
Score = 31.2 bits (71), Expect = 0.32
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 347 LKVTWLRNGVPIQ--ASNRVSTMHDFGY---VALNFKYTYPEDSGTYTCR 391
+ + L+NG I ++ + + +++FK PE S Y+C
Sbjct: 35 ISIELLKNGEVIADAQQTDLAFEKGWQFHLTKSVSFK---PEKSDEYSCS 81
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 36.7 bits (84), Expect = 0.004
Identities = 9/59 (15%), Positives = 15/59 (25%)
Query: 344 DSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
++ W N I + +++ E SG Y C E
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 89
Score = 35.9 bits (82), Expect = 0.009
Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 4/72 (5%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578
G +C P ++ W N+K + E G Y+
Sbjct: 21 GTTVILTCPQ----YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYV 76
Query: 579 CKATNALGEAVT 590
C + E
Sbjct: 77 CYPRGSKPEDAN 88
Score = 33.6 bits (76), Expect = 0.052
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRP-IHDFGYVALDIIDTIPEDSGTYTCRAV 128
C P ++ + W N + + + D +++L + E SG Y C
Sbjct: 26 LTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSEL-EQSGYYVCYPR 80
Query: 129 NLVG 132
Sbjct: 81 GSKP 84
Score = 33.2 bits (75), Expect = 0.060
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 4/73 (5%)
Query: 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
G C P S+ + W HN+ I + E SG Y
Sbjct: 21 GTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYV 76
Query: 258 CRAVNALGQAVTS 270
C + +
Sbjct: 77 CYPRGSKPEDANF 89
Score = 30.5 bits (68), Expect = 0.60
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ-HDFGYVTLDITKCVPADSGVY 709
G + C P + W N + D +++L + SG Y
Sbjct: 21 GTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSEL-EQSGYY 75
Query: 710 MCKAINRAGEAVSSTS-LKVK 729
+C E + L+ +
Sbjct: 76 VCYPRGSKPEDANFYLYLRAR 96
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 36.8 bits (85), Expect = 0.005
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 26/97 (26%)
Query: 516 VEEGKNAHFSCRLI--PVGDPTLKVEWFRNEKPLEDSS---------------------R 552
+G+ A+ C+ P L +EW + + R
Sbjct: 17 KAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGR 76
Query: 553 ITTKHDF---GYVAMDLSHVRAEDEGIYICKATNALG 586
+ + G ++++++++ D G Y CK A G
Sbjct: 77 VHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPG 113
Score = 34.8 bits (80), Expect = 0.029
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
G ++++ + D GTY C+ G A + L
Sbjct: 87 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 122
Score = 31.4 bits (71), Expect = 0.40
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 26/108 (24%)
Query: 197 EGQRAHFECRLI--PVSDNTMKVEWFHNNVPIK---------SGSRFTETNNFGF----- 240
+G+ A+ C+ P + +EW + + SG + +
Sbjct: 19 KGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVH 78
Query: 241 ----------VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
++++ D G Y C+ A G A +L+V K
Sbjct: 79 FTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
Score = 31.4 bits (71), Expect = 0.42
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
G ++++T +D G Y CK G A L V
Sbjct: 87 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 30.2 bits (68), Expect = 0.90
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 362 NRVSTMHDF---GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
RV + G ++N D GTY C+ G A L V
Sbjct: 75 GRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 38.1 bits (88), Expect = 0.006
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 22/97 (22%)
Query: 505 VFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK---VEWFRNEKP-------------LE 548
V + + G + C L + W R+ +
Sbjct: 1 VVVQAPTQVPGFL-GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 59
Query: 549 DSSRIT-----TKHDFGYVAMDLSHVRAEDEGIYICK 580
+S R+ + ++ + +R EDEG Y C
Sbjct: 60 ESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCL 96
Score = 32.0 bits (72), Expect = 0.54
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 21/76 (27%)
Query: 72 CKLEPVTDSNLK---VEWFKNGRPVTI------------------GHRFRPIHDFGYVAL 110
C L+ + W ++G ++ R + +L
Sbjct: 21 CYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASL 80
Query: 111 DIIDTIPEDSGTYTCR 126
+ ED G+YTC
Sbjct: 81 RMFGLRVEDEGSYTCL 96
Score = 29.7 bits (66), Expect = 2.8
Identities = 30/238 (12%), Positives = 59/238 (24%), Gaps = 65/238 (27%)
Query: 197 EGQRAHFECRLIPVS---DNTMKVEWFHNNVP-------IKSGSRFTETNNFGFV----- 241
G C L + + ++ W + G ++E+ FV
Sbjct: 13 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 72
Query: 242 ------ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
+L + ED G YTC V
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFV---------------------------------- 98
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK--LKVTWLR 353
+ R+ I V P T ++ + + + ++TW
Sbjct: 99 --TFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCV---STGGRPPAQITWHS 153
Query: 354 NGVPIQASNRVSTMHDFGYVA---LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ + +++V + D TC+ +E E T+ +
Sbjct: 154 DLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLT 211
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 37.1 bits (86), Expect = 0.012
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 82 LKVEWFKNGRPVTIG---HRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ + W +N + V G F D+ + L + IP D Y C+
Sbjct: 151 INITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK 198
Score = 31.7 bits (72), Expect = 0.75
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 13/110 (11%)
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIP-VGD---SKL 347
LQ + G++ + + + S P + LI V + +
Sbjct: 92 GGLQNIATGKHNLGVLTKRSNSTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVI 151
Query: 348 KVTWLRNGVPI-QASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
+TWLRN + S D+ + L F P D Y C+
Sbjct: 152 NITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIYDCK 198
Score = 31.0 bits (70), Expect = 1.3
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 9/51 (17%)
Query: 215 MKVEWFHNNVPIKSGSRFTETNNFG------FVALDIMQCLPEDSGVYTCR 259
+ + W N+ + G T L +P D +Y C+
Sbjct: 151 INITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTF---IPSDDDIYDCK 198
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 35.7 bits (82), Expect = 0.013
Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 21/100 (21%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKP-------LEDSSRIT 554
P P +++ + C P+ + V+W + +
Sbjct: 2 HPTLKTP-ESVTGTW-KGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHI 59
Query: 555 TKHDF-----------GYVAMDLSHVRAEDEGIYICKATN 583
+ + G V++ ++ ++ +D Y C+ T
Sbjct: 60 QQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTW 99
Score = 31.8 bits (72), Expect = 0.25
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 20/94 (21%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTD-SNLKVEWFK--NGRPVTI-----GHRFRPIH 103
T+ P+S+ + G +C +P+ + V+W VTI
Sbjct: 4 TLKTPESVTGTWK-GDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQA 62
Query: 104 DF-----------GYVALDIIDTIPEDSGTYTCR 126
+ G V+L I +D YTC
Sbjct: 63 KYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCE 96
Score = 28.8 bits (64), Expect = 2.7
Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 26/114 (22%)
Query: 642 LTGTSEI--MEGQSAHYDCRVVPVGDPT-MRFEWFV--------------NGVELKMGS- 683
L + C P+ + +W V G ++
Sbjct: 5 LKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKY 64
Query: 684 --RFHVQHDF-GYVTLDITKCVPADSGVYMCKAINR-----AGEAVSSTSLKVK 729
R V H G V+L I D Y C+ + L+V+
Sbjct: 65 RGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVR 118
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 36.7 bits (85), Expect = 0.013
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 82 LKVEWFKNGRPVTIGH---RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
L V W NG VT G F P D+ + + +P Y CR
Sbjct: 117 LNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAEDFYDCR 164
Score = 30.5 bits (69), Expect = 1.4
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 9/51 (17%)
Query: 215 MKVEWFHNNVPIKSGSRFTETNNFG------FVALDIMQCLPEDSGVYTCR 259
+ V W N + G + F L +P Y CR
Sbjct: 117 LNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTF---VPSAEDFYDCR 164
Score = 29.7 bits (67), Expect = 2.3
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 347 LKVTWLRNGVPI-QASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
L VTWL NG + + + D+ + L F P Y CR
Sbjct: 117 LNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFV---PSAEDFYDCR 164
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 36.6 bits (84), Expect = 0.015
Identities = 30/220 (13%), Positives = 52/220 (23%), Gaps = 56/220 (25%)
Query: 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
VE G + +C +E + ++A L +R E E
Sbjct: 13 FVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGL--------RWLARQLVDIR-EPE 63
Query: 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634
+C A ++ ++
Sbjct: 64 TQPVCFFRCARRTLQARGLIRT------------------------------------FQ 87
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVV---PVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
+P +L+ G++ CRV P T+ EL S
Sbjct: 88 RPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLT--LLRGAQELIRRSFAGEPPRA 145
Query: 692 GYVTLDIT-KCVPADSG-VYMCKAIN----RAGEAVSSTS 725
L T D G + C+A ++S
Sbjct: 146 RGAVLTATVLARREDHGANFSCRAELDLRPHGLGLFENSS 185
Score = 33.1 bits (75), Expect = 0.22
Identities = 9/98 (9%), Positives = 22/98 (22%), Gaps = 9/98 (9%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
+ G S +C E + + G ++ + +
Sbjct: 14 VERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGL--------RWLARQLVD-IREPET 64
Query: 708 VYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWK 745
+C + ++ + D V P
Sbjct: 65 QPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQP 102
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*
Length = 197
Score = 36.7 bits (85), Expect = 0.016
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 82 LKVEWFKNGRPVTIGH---RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ + W NG+ VT G F D + + + +P Y C+
Sbjct: 120 VNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCK 167
Score = 29.8 bits (67), Expect = 2.4
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 9/51 (17%)
Query: 215 MKVEWFHNNVPIKSGSRFTETNNFG------FVALDIMQCLPEDSGVYTCR 259
+ + W N + G T + L LP +Y C+
Sbjct: 120 VNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTF---LPSADEIYDCK 167
Score = 29.0 bits (65), Expect = 4.9
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
Query: 346 KLKVTWLRNGVPIQA---SNRVSTMHDFGY---VALNFKYTYPEDSGTYTCR 391
+ +TWL NG + + D + L F P Y C+
Sbjct: 119 VVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSADEIYDCK 167
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 36.3 bits (84), Expect = 0.019
Identities = 28/224 (12%), Positives = 54/224 (24%), Gaps = 46/224 (20%)
Query: 505 VFTKP---LQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
KP + + G + C+ + + E P + +
Sbjct: 2 PLPKPTLWAEPGSVISWGNSVTIWCQGTL---EAREYRLDKEESPAPWDRQ--NPLEPKN 56
Query: 562 VA-MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
A + + + G Y C + P G Q
Sbjct: 57 KARFSIPSMTEDYAGRYRC-------------------------YYRSPVGW------SQ 85
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P+ P+ Y KP + L + + G+S C+ P F
Sbjct: 86 PSDPLELVMTGAYSKPTLSAL--PSPLVTSGKSVTLLCQS---RSPMDTFLLCKERAAHP 140
Query: 681 MGSRFHVQHDFGY-VTLDITKCVPADSGVYMCKAINRAGEAVSS 723
+ + ++ G Y C + + + S
Sbjct: 141 LLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLS 184
Score = 31.7 bits (72), Expect = 0.54
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 75 EPVT---DSNLKVEWF---KNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128
VT L+ + K P + P+ I + +G Y C
Sbjct: 20 NSVTIWCQGTLEAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYR 78
Query: 129 NLVGFAE 135
+ VG+++
Sbjct: 79 SPVGWSQ 85
Score = 30.2 bits (68), Expect = 1.8
Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 7/59 (11%)
Query: 75 EPVT------DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI-PEDSGTYTCR 126
+ VT K + + A + + GTY C
Sbjct: 115 KSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCF 173
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 34.9 bits (80), Expect = 0.021
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 20/84 (23%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL---------EDSSRITTKHDFGY----- 561
G C W R + P + R+T + Y
Sbjct: 9 GVVGHPVTLPCTY-STYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGH 67
Query: 562 -----VAMDLSHVRAEDEGIYICK 580
V++ + + D G+Y C+
Sbjct: 68 ISEGDVSLTIENSVESDSGLYCCR 91
Score = 32.6 bits (74), Expect = 0.12
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 69 HFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
C+ + + +V + K+ R + + G V+L I +++ DSG Y CR
Sbjct: 39 SSACQNTLIWTNGHRVTYQKSSR-----YNLKGHISEGDVSLTIENSVESDSGLYCCR 91
Score = 29.9 bits (67), Expect = 1.2
Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 20/82 (24%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS---------GSRFTETNNF--------- 238
G C W P + G R T +
Sbjct: 11 VGHPVTLPCTY-STYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHIS 69
Query: 239 -GFVALDIMQCLPEDSGVYTCR 259
G V+L I + DSG+Y CR
Sbjct: 70 EGDVSLTIENSVESDSGLYCCR 91
Score = 29.9 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 677 VELKMGSRFHVQHDF--GYVTLDITKCVPADSGVYMCK 712
V + SR++++ G V+L I V +DSG+Y C+
Sbjct: 54 VTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCR 91
Score = 28.7 bits (64), Expect = 2.8
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 356 VPIQASNRVSTMHDF--GYVALNFKYTYPEDSGTYTCR 391
V Q S+R + G V+L + + DSG Y CR
Sbjct: 54 VTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCR 91
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 36.3 bits (83), Expect = 0.021
Identities = 29/226 (12%), Positives = 53/226 (23%), Gaps = 51/226 (22%)
Query: 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG 254
++ C +E N + + +++
Sbjct: 14 VEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNI----------SHDT 63
Query: 255 VYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQ 314
V C + Q + N+ V YQ + T+
Sbjct: 64 VLQCHFTCSGKQESMNSNVSV--------------------------YQPPRQVILTLQP 97
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVG-DSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
V A ++ E R+ V L + R +
Sbjct: 98 TLV----------AVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 147
Query: 374 ALNFKYT-YPEDSG-TYTCRAVNELGEAVTSSTLFVESKASLQLDT 417
F T ED ++C AV +L +F + A L+
Sbjct: 148 TATFNSTADREDGHRNFSCLAVLDLMSR--GGNIFHKHSAPKMLEI 191
Score = 33.6 bits (76), Expect = 0.15
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 516 VEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLE-DSSRITTKHDFGYVAMDLSHVRAED 573
V GK+ CR+ V +L + FR + L ++ A S ED
Sbjct: 100 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADRED 159
Query: 574 EG-IYICKATNALGE 587
+ C A L
Sbjct: 160 GHRNFSCLAVLDLMS 174
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 36.3 bits (84), Expect = 0.021
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 82 LKVEWFKNGRPVTIG---HRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ + W +N + VT G F D+ + L + IP D Y C+
Sbjct: 121 INITWLRNSKSVTDGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK 168
Score = 30.1 bits (68), Expect = 1.8
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 19/116 (16%)
Query: 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI-------P 341
E LQ + G++ + + + S P + LI P
Sbjct: 59 EPQGGLQNIATGKHNLEILTKRSNSTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFP 118
Query: 342 VGDSKLKVTWLRNGVPI-QASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
+ +TWLRN + S D+ + L F P D Y C+
Sbjct: 119 ---PVINITWLRNSKSVTDGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIYDCK 168
Score = 29.7 bits (67), Expect = 2.6
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 9/51 (17%)
Query: 215 MKVEWFHNNVPIKSGSRFTETNNFG------FVALDIMQCLPEDSGVYTCR 259
+ + W N+ + G T L +P D +Y C+
Sbjct: 121 INITWLRNSKSVTDGVYETSFFVNRDYSFHKLSYLTF---IPSDDDIYDCK 168
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 36.4 bits (83), Expect = 0.029
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 639 TQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV--NGVELKMGSRFHVQHDFGYVTL 696
L E+ GQ A + C W + + + +
Sbjct: 167 HFLRIQNVEVNAGQFATFQC-SAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASF 225
Query: 697 DITKCVPADSGVYMCKAINRAGEAVSSTS-LKVK 729
++ D+G Y C G +S+ + L VK
Sbjct: 226 NVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 34.6 bits (79), Expect = 0.034
Identities = 17/98 (17%), Positives = 22/98 (22%), Gaps = 33/98 (33%)
Query: 519 GKNAHFSCRLIP--VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD----------- 565
G C L+P G V W R + P + G
Sbjct: 17 GGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFV 76
Query: 566 --------------------LSHVRAEDEGIYICKATN 583
L + EDEG Y C+
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFAT 114
Score = 28.4 bits (63), Expect = 5.0
Identities = 11/93 (11%), Positives = 17/93 (18%), Gaps = 20/93 (21%)
Query: 34 EWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPV 93
W + A + ++ P F
Sbjct: 39 TWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSF--------------------VSA 78
Query: 94 TIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ L + ED G YTC
Sbjct: 79 KQSTGQDTEAELQDATLALHGLTVEDEGNYTCE 111
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.047
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 479 EK--IRKLEDT----EPHKRPEVDDNAT 500
EK ++KL+ + P + AT
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT 45
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 35.5 bits (82), Expect = 0.047
Identities = 28/181 (15%), Positives = 47/181 (25%), Gaps = 45/181 (24%)
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
L + P + Y C A+ + L + K
Sbjct: 75 LILELATPSQTSVYFC------------ASGDLGQTNERLFFGHGTKLSVLGSADDAKKD 122
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF--------- 220
+ + Q+P ++ + EG+ A C + + W+
Sbjct: 123 AAKK---DGQVRQSP------QSLTVWEGETAILNCSYENSAFDYF--PWYQQFPGEGPA 171
Query: 221 -----HNNVPIKSGSRFT-----ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTS 270
+ K RFT +L I P DS Y C A++ V
Sbjct: 172 LLISILSVSDKKEDGRFTIFFNKREKKL---SLHIADSQPGDSATYFCAAIDTNAYKVIF 228
Query: 271 G 271
G
Sbjct: 229 G 229
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 36.0 bits (83), Expect = 0.048
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 490 HKRPEVDDNATKQRP----VFTKPLQNIDAVEEGKNAHFSCRL--IPVGDPTLKVEWFRN 543
HK + + VF P + D + + +C + + DP +K W+ +
Sbjct: 301 HKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVD 360
Query: 544 EKPLEDSSRITTKHDFG--YVAM---DLSHVRAEDEGIYICKATN 583
+ ++ + + Y + + H D Y CK +N
Sbjct: 361 GVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 405
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 35.6 bits (82), Expect = 0.050
Identities = 33/234 (14%), Positives = 55/234 (23%), Gaps = 48/234 (20%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA-MDLSHVRAEDE 574
V G + C ++ ED I H + ++S V
Sbjct: 35 VPRGGHVTLRCHYRH---RFNNFMLYK-----EDRIHIPIFHGRIFQESFNMSPVTTAHA 86
Query: 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634
G Y C+ ++ +A + + +
Sbjct: 87 GNYTCRGSHPHSPTGWSAPSNP-----VVIMVTGN-----------------------HR 118
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY- 693
KP L + G+ C + + F G+ HD
Sbjct: 119 KPSL--LAHPGPLVKSGERVILQCWSDIMFE---HFFLHKEGISKDPSRLVGQIHDGVSK 173
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTS-----LKVKSKSDIVSESLQPD 742
I + A +G Y C S + V + S S QP
Sbjct: 174 ANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG 227
Score = 34.5 bits (79), Expect = 0.11
Identities = 27/204 (13%), Positives = 46/204 (22%), Gaps = 48/204 (23%)
Query: 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA-LDIMQCLPEDS 253
+K G+R +C + + ++ A I + +
Sbjct: 130 VKSGERVILQCW---SDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALA 186
Query: 254 GVYTCRAVNALGQAVTSG-----NLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSII 308
G Y C S +++V T SLS
Sbjct: 187 GTYRCYGSVTHTPYQLSAPSDPLDIVV-------TGPYEKPSLS---------------- 223
Query: 309 EDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
QP + E+ +R R G +
Sbjct: 224 ----------AQPGPKVQAGESVTLSCSSRSSYD-----MYHLSREGGAHERRLPAVRKV 268
Query: 369 DFGYVALNFKYTYPEDSGTYTCRA 392
+ + A +F GTY C
Sbjct: 269 NRTFQA-DFPLGPATHGGTYRCFG 291
Score = 34.1 bits (78), Expect = 0.15
Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 86 WFKNGRPVTIGHRFRPIHDFGYVA-LDIIDTIPEDSGTYTCRAVN 129
K G IHD A I + +GTY C
Sbjct: 151 LHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSV 195
Score = 32.2 bits (73), Expect = 0.67
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 348 KVTWLRNGVPIQASNRVSTMHDFGYVA-LNFKYTYPEDSGTYTCRAVNELGEAVTS 402
+ G+ S V +HD A + +GTY C S
Sbjct: 148 HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLS 203
Score = 30.6 bits (69), Expect = 2.0
Identities = 6/42 (14%), Positives = 10/42 (23%), Gaps = 1/42 (2%)
Query: 86 WFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
+ G + + A + GTY C
Sbjct: 251 LSREGGAHERRLPAVRKVNRTFQADFPLGP-ATHGGTYRCFG 291
Score = 28.7 bits (64), Expect = 8.7
Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 6/58 (10%)
Query: 348 KVTWLRNGVPIQASNRVSTMHDFGYVA-LNFKYTYPEDSGTYTCRAVNELGEAVTSST 404
+ + H + N +G YTCR + S+
Sbjct: 53 NFMLYKED-----RIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAP 105
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 36.0 bits (83), Expect = 0.051
Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 15/126 (11%)
Query: 607 QHPEGLKKIQELEQPASPMPQE--------PERQYEKPIFTQLLTGTSEIMEGQSAHYDC 658
HP K+ + +P P + P +F +M S C
Sbjct: 203 AHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTC 262
Query: 659 RVVPV--GDPTMRFEWFVNGVELKMGSRFHVQHDFGY-----VTLDITKCVPADSGVYMC 711
VV V DP ++ WFVN VE+ + D+ L I + C
Sbjct: 263 VVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKC 322
Query: 712 KAINRA 717
K N+
Sbjct: 323 KVNNKD 328
Score = 33.4 bits (76), Expect = 0.34
Identities = 37/263 (14%), Positives = 66/263 (25%), Gaps = 51/263 (19%)
Query: 473 QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNI------DAVEEGKNAHFSC 526
HP K+ K + + P I D + + +C
Sbjct: 203 AHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTC 262
Query: 527 RLIPV--GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS-----HVRAEDEGIYIC 579
++ V DP +++ WF N + + T + D+ +S H + C
Sbjct: 263 VVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKC 322
Query: 580 KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFT 639
K + + I+ + P+
Sbjct: 323 KVN-------------------------NKDLPAPIERTISKPKGSVRAPQ--------V 349
Query: 640 QLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG-----YV 694
+L E M + C V + EW NG D Y
Sbjct: 350 YVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYS 409
Query: 695 TLDITKCVPADSGVYMCKAINRA 717
L + K + Y C ++
Sbjct: 410 KLRVEKKNWVERNSYSCSVVHEG 432
Score = 31.4 bits (71), Expect = 1.1
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVT--DSNLKVEWFKNGRPVTIGHRFRPIHDFGY-- 107
+ PK + L C + V+ D ++++ WF N V D+
Sbjct: 242 FIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTL 301
Query: 108 ---VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
AL I + C+ N A ++ T+
Sbjct: 302 RVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKP 340
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 33.8 bits (77), Expect = 0.061
Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 17/92 (18%)
Query: 197 EGQRAHFECRL--IPVSDNTMKVEWFHNNV--------------PIKSGSRFTETNNFGF 240
EG A C V WF + V + + +
Sbjct: 21 EGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQ 80
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGN 272
L I D+ +Y C V LG V +GN
Sbjct: 81 AELHIRDVRGHDASIYVC-RVEVLGLGVGTGN 111
Score = 33.4 bits (76), Expect = 0.074
Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 17/92 (18%)
Query: 516 VEEGKNAHFSCRL--IPVGDPTLKVEWFRNE--------------KPLEDSSRITTKHDF 559
EG +A C V WFR+E + +
Sbjct: 19 TLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHD 78
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
+ + VR D IY+C LG V T
Sbjct: 79 HQAELHIRDVRGHDASIYVC-RVEVLGLGVGT 109
Score = 29.9 bits (67), Expect = 1.0
Identities = 17/91 (18%), Positives = 22/91 (24%), Gaps = 17/91 (18%)
Query: 53 VTKPKSIENLRERGHAHFECKLEP--VTDSNLKVEWFK--------------NGRPVTIG 96
V++P I E A C + V WF+ R
Sbjct: 11 VSQPPEI-RTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAP 69
Query: 97 HRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
L I D D+ Y CR
Sbjct: 70 LASSRFLHDHQAELHIRDVRGHDASIYVCRV 100
Score = 29.1 bits (65), Expect = 2.2
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 20/102 (19%)
Query: 649 MEGQSAHYDCR--VVPVGDPTMRFEWF----VNGVELKMGS----------RFHVQHDFG 692
+EG SA C WF V G E++ G+
Sbjct: 20 LEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDH 79
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSS---TSLKVKSK 731
L I D+ +Y+C + G V + T L V+ +
Sbjct: 80 QAELHIRDVRGHDASIYVC-RVEVLGLGVGTGNGTRLVVEKE 120
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 33.3 bits (76), Expect = 0.071
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 17/78 (21%)
Query: 519 GKNAHFSCRLIPVGDPTLK---VEWFRNEKPL--------EDSSRI------TTKHDFGY 561
+ A C+ + +L V W E + E + T D
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS 68
Query: 562 VAMDLSHVRAEDEGIYIC 579
+ L +++ +D+G+Y C
Sbjct: 69 WTLRLHNLQIKDKGLYQC 86
Score = 29.8 bits (67), Expect = 1.3
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 17/78 (21%)
Query: 66 GHAHFECKLEPVTD---SNLKVEWFKNGRPVTI--------------GHRFRPIHDFGYV 108
A C+ + S L V W V + R D
Sbjct: 10 ETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSW 69
Query: 109 ALDIIDTIPEDSGTYTCR 126
L + + +D G Y C
Sbjct: 70 TLRLHNLQIKDKGLYQCI 87
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 34.9 bits (80), Expect = 0.078
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 505 VFTKPLQNIDAVEEGKNAHFSCRL--IPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGY 561
VF P + D + G +C + I DP ++ WF ++ + + + K
Sbjct: 18 VFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNST 77
Query: 562 VAMD----LSHVRAEDEGIYICKATN 583
+ + + + CK +
Sbjct: 78 LRSVSELPIVERDWLNGKTFKCKVNS 103
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 33.3 bits (75), Expect = 0.087
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 198 GQRAHFECRLIPVSDNTMKVEW--FHNNVPIKSGSRFT---ETNNFGFVALDIMQCLPED 252
G EC + N V W + +K R T E N F L LP D
Sbjct: 26 GDPFELECP-VKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPND 84
Query: 253 SGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
+G Y C A + S + ++ H
Sbjct: 85 NGSYRCSANFQSNL-IESHSTTLYVTDVKHHHHHH 118
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 32.7 bits (75), Expect = 0.087
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 82 LKVEWFKNGRPVTIGH--RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
++++ KNG+ + D+ + L + P ++ TY CR
Sbjct: 35 IEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR 81
Score = 28.9 bits (65), Expect = 2.0
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 346 KLKVTWLRNGVPIQASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
+++ L+NG I D+ + F P ++ TY CR
Sbjct: 34 HIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFT---PTETDTYACR 81
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 33.0 bits (75), Expect = 0.099
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR--NEKPLEDSSRITTKHDFGY-- 561
L ++ V G N + + ++ WF ++K +E SR + + +
Sbjct: 7 GQGHLVHMTVVS-GSNVTLNISESLPENYK-QLTWFYTFDQKIVEWDSRKSKYFESKFKG 64
Query: 562 -VAMD-------LSHVRAEDEGIYICKATNALGEAVT 590
V +D +S V+ ED YI + G
Sbjct: 65 RVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE 101
Score = 31.4 bits (71), Expect = 0.34
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 14/109 (12%)
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN----VPIKSGSRFTETN 236
+ L + + G + +N ++ WF+ V S +
Sbjct: 2 SSGSSGQGHLVHMTVVSGSNVTLNI-SESLPENYKQLTWFYTFDQKIVEWDSRKSKYFES 60
Query: 237 NF-GFVALD-------IMQCLPEDSGVYTCRAVNALGQAVT-SGNLLVH 276
F G V LD I + ED+ Y R + G L V
Sbjct: 61 KFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109
Score = 30.7 bits (69), Expect = 0.67
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 14/93 (15%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRFEWF----------VNGVELKMGSRFH--VQHDFGYVTL 696
+ G + + + + WF + S+F V+ D L
Sbjct: 17 VSGSNVTLNISESLPENYK-QLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGAL 75
Query: 697 DITKCVPADSGVYMCKAINRAGEAVSST-SLKV 728
I+K D+ Y+ + + + G L+V
Sbjct: 76 YISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
Score = 30.3 bits (68), Expect = 1.0
Identities = 16/105 (15%), Positives = 25/105 (23%), Gaps = 17/105 (16%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG--------------VPI 358
S + + V + K ++TW
Sbjct: 2 SSGSSGQGHLVHMTVVSGSNVTLNISESLPENYK-QLTWFYTFDQKIVEWDSRKSKYFES 60
Query: 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
+ RV G AL ED+ TY R + + G
Sbjct: 61 KFKGRVRLDPQSG--ALYISKVQKEDNSTYIMRVLKKTGNEQEWK 103
Score = 29.1 bits (65), Expect = 2.5
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 80 SNLKVEWFKNGRPVTIGHRFRPIHDFGYV--ALDIIDTIPEDSGTYTCRAVNLVG 132
+ K+ + + + +F+ AL I ED+ TY R + G
Sbjct: 43 FDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTG 97
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 32.8 bits (75), Expect = 0.10
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 83 KVEWFKNGRPVTIGH--RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+++ KNG+ + D+ + L + P ++ TY CR
Sbjct: 56 EIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR 101
Score = 29.0 bits (65), Expect = 2.3
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 345 SKLKVTWLRNGVPIQASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
+++ L+NG I D+ + F P ++ TY CR
Sbjct: 53 PHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFT---PTETDTYACR 101
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 34.1 bits (78), Expect = 0.11
Identities = 33/237 (13%), Positives = 61/237 (25%), Gaps = 63/237 (26%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT----TKHDFGYVAMDLSHVRA 571
+ + C+ ++ +N E R+ T +F + H+ A
Sbjct: 20 IPLDGSVKIQCQA-IREAYLTQLMIIKNSTYREIGRRLKFWNETDPEF-----VIDHMDA 73
Query: 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631
G Y C+ + + +
Sbjct: 74 NKAGRYQCQYRIGHYRF-------------------------------RYSDTLELVVTG 102
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
Y KP + +M G++ C + F+ F K G QH
Sbjct: 103 LYGKPFLSAD--RGLVLMPGENISLTCS-----SAHIPFDRFSL---AKEGELSLPQHQS 152
Query: 692 G--YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD----IVSESLQPD 742
G + SG+Y C + S S+ +V++S+ D
Sbjct: 153 GEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWS------FPSNALELVVTDSIHQD 203
>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system,
SELF antigen, invariant chain, CLIP; 2.20A {Homo
sapiens}
Length = 207
Score = 34.0 bits (78), Expect = 0.12
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 82 LKVEWFKNGRPVTIG---HRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ V W +NG+PVT G F P D + + +P Y CR
Sbjct: 132 VNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR 179
Score = 31.3 bits (71), Expect = 0.90
Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 13/110 (11%)
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGD----SKL 347
L + + + + + P + LI D +
Sbjct: 73 GALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVV 132
Query: 348 KVTWLRNGVPI-QASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
VTWLRNG P+ + + D + L F P Y CR
Sbjct: 133 NVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL---PSTEDVYDCR 179
Score = 30.5 bits (69), Expect = 1.7
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 215 MKVEWFHNNVPIKSGSRFTETNNFG------FVALDIMQCLPEDSGVYTCR 259
+ V W N P+ +G T F L LP VY CR
Sbjct: 132 VNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPF---LPSTEDVYDCR 179
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 32.0 bits (72), Expect = 0.14
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFR--NEKPLEDSSRITTKHDFGYVAMDLSHVRAED 573
+ EG+ CR V P + V + + + D RI G++ +S+ ++
Sbjct: 17 MTEGRELVIPCR---VTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFI---ISNATYKE 70
Query: 574 EGIYICKAT 582
G+ C+AT
Sbjct: 71 IGLLTCEAT 79
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 34.3 bits (78), Expect = 0.16
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 223 NVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ + F T++F I + LP DSGV+ C G N+ V
Sbjct: 367 DGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISV 419
Score = 31.6 bits (71), Expect = 1.2
Identities = 11/51 (21%), Positives = 15/51 (29%)
Query: 91 RPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
V F F I +P DSG + C + G E +
Sbjct: 368 GTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNIS 418
Score = 30.1 bits (67), Expect = 2.9
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 380 TYPEDSGTYTCRAVNELGEAVTSSTLFV 407
P DSG + C G + V
Sbjct: 392 ILPPDSGVWVCSVNTVAGMVEKPFNISV 419
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 32.3 bits (73), Expect = 0.17
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 192 NCEIKEGQRAHFE---CRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN--FGFVALDIM 246
C+ + + C+ V + SRFT ++ GF + +
Sbjct: 31 RCQYPPTGSLYEKKGWCKEASALVCIRLVT-SSKPRTMAWTSRFTIWDDPDAGFFTVTMT 89
Query: 247 QCLPEDSGVYTCR 259
EDSG Y CR
Sbjct: 90 DLREEDSGHYWCR 102
Score = 30.0 bits (67), Expect = 1.2
Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 21/106 (19%)
Query: 642 LTGTSEI--MEGQSA----HYD-----------CRVVPVGDPTMRFEWFVNGVELKMGSR 684
+ + + GQ+ Y C+ R
Sbjct: 14 QSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTS-R 72
Query: 685 FHVQHD--FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
F + D G+ T+ +T DSG Y C I R + S S++
Sbjct: 73 FTIWDDPDAGFFTVTMTDLREEDSGHYWC-RIYRPSDNSVSKSVRF 117
Score = 28.8 bits (64), Expect = 3.2
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYT 124
+ + C + R TI D G+ + + D EDSG Y
Sbjct: 48 KEASALVCIRLVTSSKP--RTMAWTSR-FTI----WDDPDAGFFTVTMTDLREEDSGHYW 100
Query: 125 CR 126
CR
Sbjct: 101 CR 102
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 34.2 bits (78), Expect = 0.18
Identities = 12/89 (13%), Positives = 21/89 (23%), Gaps = 10/89 (11%)
Query: 194 EIKEGQRAHFECRLIP-----VSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQC 248
++ C L N + W N+ I V
Sbjct: 14 VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV---TFTD 70
Query: 249 LPEDSGVYTCRAVNA--LGQAVTSGNLLV 275
+ + TC + L Q V ++
Sbjct: 71 IASLNIQLTCNILTFGQLEQNVYGITIIS 99
Score = 33.8 bits (77), Expect = 0.25
Identities = 8/77 (10%), Positives = 19/77 (24%), Gaps = 8/77 (10%)
Query: 68 AHFECKLEP-----VTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGT 122
C L+ + + W N + ++ I+ + I +
Sbjct: 21 FTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP-KEQYTIINR--TASSVTFTDIASLNIQ 77
Query: 123 YTCRAVNLVGFAEVQAT 139
TC + +
Sbjct: 78 LTCNILTFGQLEQNVYG 94
Score = 32.7 bits (74), Expect = 0.53
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 341 PVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAV--NELGE 398
+ + W N I T+ + ++ F + TC + +L +
Sbjct: 34 YFHVNANYIVWKTNHFTIPKEQY--TIINRTASSVTFT-DIASLNIQLTCNILTFGQLEQ 90
Query: 399 AVTSSTLFV 407
V T+
Sbjct: 91 NVYGITIIS 99
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 33.2 bits (75), Expect = 0.21
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 82 LKVEWFKNGRPVT-IGH-RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
L V W + PV G + + A ++ PE S ++C
Sbjct: 131 LTVNWQHHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCI 177
Score = 30.1 bits (67), Expect = 2.2
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 347 LKVTWLRNGVPIQ--ASNRVSTMHDFGY---VALNFKYTYPEDSGTYTCR 391
L V W + VP++ VS + + LNF PE S ++C
Sbjct: 131 LTVNWQHHSVPVEGFGPTFVSAVDGLSFQAFSYLNFT---PEPSDIFSCI 177
Score = 28.5 bits (63), Expect = 7.4
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 214 TMKVEWFHNNVPIK--SGSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259
+ V W H++VP++ + + + F A + PE S +++C
Sbjct: 130 MLTVNWQHHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCI 177
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 32.1 bits (72), Expect = 0.25
Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 30/110 (27%)
Query: 516 VEEGKNAHFSCRL-IPVGDPTLKVEWFRNEKPLEDSSRITTKHDF-----GYVAMD---- 565
V G C + + W + P + +++ G+V D
Sbjct: 16 VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKE 75
Query: 566 --------------------LSHVRAEDEGIYICKATNALGEAVTTASMK 595
L+HV +D G Y C+ K
Sbjct: 76 SFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 125
Score = 27.9 bits (61), Expect = 7.2
Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 30/120 (25%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNL-KVEWFKNGRP-----VTIGHRFRPIHDF 105
TV + + G C + D+ + W K P V G+
Sbjct: 6 TVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGL 65
Query: 106 GYVA------------------------LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
G+V L + P+D G Y C+ E +
Sbjct: 66 GFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 125
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, immune system; HET: 16A; 1.32A
{Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B 3jvg_C*
2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 31.5 bits (72), Expect = 0.25
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 346 KLKVTWLRNGVPIQASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
K+ +T +++GVP++ + D+ + V +F P TY C+
Sbjct: 34 KISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFT---PSSGSTYACK 81
Score = 30.7 bits (70), Expect = 0.36
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 83 KVEWFKNGRPVTIGH--RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ K+G P+ D+ + L D P TY C+
Sbjct: 36 SITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSGSTYACK 81
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 32.8 bits (75), Expect = 0.26
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 82 LKVEWFKNGRPVTIG---HRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ V W +NG+PVT G F P D + + +P Y CR
Sbjct: 117 VNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCR 164
Score = 29.7 bits (67), Expect = 2.3
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 215 MKVEWFHNNVPIKSGSRFTETNNFG------FVALDIMQCLPEDSGVYTCR 259
+ V W N P+ +G T F L LP VY CR
Sbjct: 117 VNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPF---LPSTEDVYDCR 164
Score = 28.9 bits (65), Expect = 4.0
Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 19/113 (16%)
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI-------PVGD 344
L + + + + + P + LI P
Sbjct: 58 GALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTP--- 114
Query: 345 SKLKVTWLRNGVPI-QASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
+ VTWLRNG P+ + + D + L F P Y CR
Sbjct: 115 PVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL---PSTEDVYDCR 164
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 31.7 bits (72), Expect = 0.30
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 51 YTVTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFK-----------NGRPVTI 95
+ V+ PK+++ L C + + + W+ +G P +
Sbjct: 2 WGVSSPKNVQGL-SGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLV 60
Query: 96 ----GHRFRPIHDF--GYVALDIIDTIPEDSGTYTCR 126
R + + L + D PEDSGTY R
Sbjct: 61 DKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFR 97
Score = 30.2 bits (68), Expect = 1.1
Identities = 11/89 (12%), Positives = 19/89 (21%), Gaps = 21/89 (23%)
Query: 516 VEEGKNAHFSCRL-IPVGDPT---LKVEWFRNEKPLED---------------SSRITTK 556
G C P P + W+ + R
Sbjct: 12 GLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELM 71
Query: 557 HDF--GYVAMDLSHVRAEDEGIYICKATN 583
+ + L ++ ED G Y +
Sbjct: 72 GNMDHKVCNLLLKDLKPEDSGTYNFRFEI 100
Score = 27.5 bits (61), Expect = 7.5
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 21/83 (25%)
Query: 650 EGQSAHYDCRV-VPVGDPT---MRFEWFVNG---------------VELKMGSRFHVQHD 690
G C P P + W+ + V+ + R + +
Sbjct: 14 SGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGN 73
Query: 691 F--GYVTLDITKCVPADSGVYMC 711
L + P DSG Y
Sbjct: 74 MDHKVCNLLLKDLKPEDSGTYNF 96
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 33.1 bits (75), Expect = 0.30
Identities = 22/223 (9%), Positives = 54/223 (24%), Gaps = 46/223 (20%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFG--YVA 109
+ + C + T +++ W ++G+ + + G
Sbjct: 11 KILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAST 70
Query: 110 ---LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
L + TYTC Q+ Y
Sbjct: 71 QSELTLSQKHWLSDRTYTC----------------------------------QVTYQGH 96
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNV 224
+ + + + + ++ + C + + S T+++ W +
Sbjct: 97 TFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASG 156
Query: 225 PIKSGSRFTET----NNFGFVA-LDIMQCLPEDSGVYTCRAVN 262
+ S E + L + + Y CR +
Sbjct: 157 KPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH 199
Score = 30.8 bits (69), Expect = 1.5
Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 490 HKRPEVDDNATKQRPVFTKPLQNIDA------VEEGKNAHFSCRL--IPVGDPTLKVEWF 541
++ +D+ K + + + + K+ +C + + T+++ W
Sbjct: 93 YQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWS 152
Query: 542 R-NEKPLEDSSRITTKHDFGYVAMD----LSHVRAEDEGIYICKATN 583
R + KP+ S+R K G + + + + Y C+ T+
Sbjct: 153 RASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH 199
Score = 28.9 bits (64), Expect = 7.4
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 345 SKLKVTWLRNGVPIQASNRVSTMHDFG--YVA---LNFKYTYPEDSGTYTCRA 392
+++TWL +G + ++ G L + TYTC+
Sbjct: 39 GTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQV 91
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 31.5 bits (71), Expect = 0.34
Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 26/105 (24%)
Query: 516 VEEGKNAHFSCRL---IPVGDPTLKVEWFRNEKPLEDS--------------------SR 552
G C V D W + D+ R
Sbjct: 11 GAVGSQVTLHCSFWSSEWVSDDI-SFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKER 69
Query: 553 ITTKHD--FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595
I D + ++ + ++ D G + C N T+ +
Sbjct: 70 IQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114
Score = 29.6 bits (66), Expect = 1.7
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 361 SNRVSTMHD--FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS--TLFVESK 410
R+ + D + ++ D+GT+TC N +S TL+V K
Sbjct: 67 KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120
Score = 28.8 bits (64), Expect = 3.4
Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 29/108 (26%)
Query: 34 EWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPV 93
W + E + + +Y +P E + + G P
Sbjct: 36 TWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQW------------------VGDP- 76
Query: 94 TIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ ++ I + D+GT+TC N + +
Sbjct: 77 ----------SWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114
Score = 28.4 bits (63), Expect = 3.6
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV--SSTSLKVKSK 731
++ + ++ I +D+G + C N S +L V K
Sbjct: 71 QWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120
Score = 27.6 bits (61), Expect = 6.7
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG--NLLVHSK 278
++ ++ ++ I D+G +TC N + L V K
Sbjct: 71 QWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 31.3 bits (71), Expect = 0.41
Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWF------HNNVPIKSGSRFTETNNFGF--VALDIMQC 248
G+ C L S W+ N I G R+ ET N G +L I
Sbjct: 14 TGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDL 73
Query: 249 LPEDSGVYTCRAVNALGQAVTSGN 272
EDSG Y C+A N
Sbjct: 74 RVEDSGTYKCQAFYVFFAEDVGSN 97
Score = 29.4 bits (66), Expect = 1.9
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 72 CKLEPVTDSNLKVEWFK------NGRPVTIGHRFRPIHD--FGYVALDIIDTIPEDSGTY 123
C L + W++ N + ++IG R+ + +L I D EDSGTY
Sbjct: 22 CVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY 81
Query: 124 TCRA 127
C+A
Sbjct: 82 KCQA 85
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 32.9 bits (75), Expect = 0.41
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 14/138 (10%)
Query: 607 QHPEGLKKIQELEQPASPMPQE------PERQYEKP-IFTQLLTGTSEIMEGQSAHYDCR 659
H K+ + +P S P +F +M ++ C
Sbjct: 213 NHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCV 272
Query: 660 VVPVG--DPTMRFEWFVNGVELKMGSRFHVQHDFGY-----VTLDITKCVPADSGVYMCK 712
VV V DP ++F W+V+GVE+ + + L + + Y CK
Sbjct: 273 VVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCK 332
Query: 713 AINRAGEAVSSTSLKVKS 730
N+A A ++
Sbjct: 333 VSNKALPAPIEKTISKAK 350
Score = 32.9 bits (75), Expect = 0.41
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 7/82 (8%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPV--TDSNLKVEWFKNGRPVTIGHRFRPIHDFGY-- 107
+ PK + L C + V D +K W+ +G V +
Sbjct: 251 FLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTY 310
Query: 108 ---VALDIIDTIPEDSGTYTCR 126
L ++ + Y C+
Sbjct: 311 RVVSVLTVLHQDWLNGKEYKCK 332
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 31.4 bits (70), Expect = 0.43
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 234 ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
E + L D+G Y+C N Q + S ++ +H
Sbjct: 72 ENRSVPVFVLHFKPIHLSDNGSYSCST-NFNSQVINSHSVTIH 113
Score = 30.6 bits (68), Expect = 0.74
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 348 KVTWLR----NGVPIQASNRVSTM----HDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399
VTW + VP++ ++ T L+FK + D+G+Y+C
Sbjct: 46 NVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVI 105
Query: 400 VTSSTL 405
+ S
Sbjct: 106 NSHSVT 111
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 30.8 bits (70), Expect = 0.43
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 348 KVTWLRNGVPIQASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
+V L+NG I+ D+ + F P + Y CR
Sbjct: 37 EVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFT---PTEKDEYACR 82
Score = 29.2 bits (66), Expect = 1.3
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 83 KVEWFKNGRPVTIGH--RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+V+ KNG + D+ + L + P + Y CR
Sbjct: 37 EVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACR 82
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 30.8 bits (70), Expect = 0.48
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 348 KVTWLRNGVPIQASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
+T +++GVP++ + D+ + V +F P TY C+
Sbjct: 56 SITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFT---PSSGSTYACK 101
Score = 30.8 bits (70), Expect = 0.56
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 83 KVEWFKNGRPVTIGH--RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ K+G P+ D+ + L D P TY C+
Sbjct: 56 SITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSGSTYACK 101
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 31.8 bits (72), Expect = 0.49
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 676 GVELKMGSRFHVQHD--FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
K RF + + +L I P DS Y C A + T L VK
Sbjct: 52 VSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKP 108
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 30.8 bits (70), Expect = 0.50
Identities = 23/88 (26%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF------HNNVPIKSGSRFTE 234
Q P T + G+ C L S W+ N I G R+ E
Sbjct: 4 DQTPRSVT------KETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVE 57
Query: 235 TNNFGF--VALDIMQCLPEDSGVYTCRA 260
T N G +L I ED G Y C
Sbjct: 58 TVNSGSKSFSLRINDLTVEDGGTYRCGL 85
Score = 30.4 bits (69), Expect = 0.67
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFV----NGVELKM--GSRFHVQHDFG--YVTLDITKC 701
G+S +C + W+ G E + G R+ + G +L I
Sbjct: 14 TGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDL 73
Query: 702 VPADSGVYMCKAINRAG 718
D G Y C G
Sbjct: 74 TVEDGGTYRCGLGVAGG 90
Score = 28.5 bits (64), Expect = 3.1
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 72 CKLEPVTDSNLKVEWFK----NGRPVTI--GHRFRPIHDFG--YVALDIIDTIPEDSGTY 123
C L + + W++ G +I G R+ + G +L I D ED GTY
Sbjct: 22 CVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTY 81
Query: 124 TCRA 127
C
Sbjct: 82 RCGL 85
Score = 27.7 bits (62), Expect = 6.6
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFR------NEKPLEDSSRITTKHDFG--YVAMDLS 567
E G++ +C L W+R NE+ + R + G ++ ++
Sbjct: 12 KETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRIN 71
Query: 568 HVRAEDEGIYICKATNALG 586
+ ED G Y C A G
Sbjct: 72 DLTVEDGGTYRCGLGVAGG 90
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 30.4 bits (69), Expect = 0.67
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 345 SKLKVTWLRNGVPIQASNRVSTMH--DFGY---VALNFKYTYPEDSGTYTCR 391
S ++V L+NG I+ D+ + F P + Y CR
Sbjct: 53 SDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFT---PTEKDEYACR 101
Score = 28.1 bits (63), Expect = 4.8
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 83 KVEWFKNGRPVTIGH--RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+V+ KNG + D+ + L + P + Y CR
Sbjct: 56 EVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACR 101
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 30.8 bits (70), Expect = 0.70
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 226 IKSGSRFTET--NNFGFVALDIMQCLPEDSGVYTCRAVNALG 265
I G R+ ET +L I +DSG Y C+ + G
Sbjct: 49 ISDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCKPESRYG 90
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 31.3 bits (71), Expect = 0.71
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 9/62 (14%)
Query: 75 EPVT---DSNLKVEWF---KNGRPVTIGHRFRPIHDFGYVA-LDIIDTIPEDSGTYTCRA 127
PVT + + + + + R + I E +G Y C
Sbjct: 20 SPVTLRCQGGQETQEYRLYREKKTAPWITRIP--QELVKKGQFPIPSITWEHTGRYRCYY 77
Query: 128 VN 129
+
Sbjct: 78 GS 79
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 31.4 bits (71), Expect = 0.82
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 75 EPVT---DSNLKVEWF---KNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128
VT L+ + + K G P + P+ I +G Y C
Sbjct: 20 NSVTIRCQGTLEAQEYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYY 78
Query: 129 NLVG 132
+ G
Sbjct: 79 SPAG 82
Score = 29.1 bits (65), Expect = 4.8
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 13/97 (13%)
Query: 660 VVPVGDP----------TMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
V+ G+ + G ++ + I +G Y
Sbjct: 15 VISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRY 73
Query: 710 MCKAINRAGEAVSSTSLK--VKSKSDIVSESLQPDAW 744
C + AG + S L+ V + + S P
Sbjct: 74 RCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPV 110
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 31.5 bits (71), Expect = 0.84
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 86 WFKNGRPVTIGHRFRPIHDFGYVA-LDIIDTIPEDSGTYTCRA 127
+ G+ H HD A I + + +GTY C
Sbjct: 39 LHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG 81
Score = 31.1 bits (70), Expect = 1.3
Identities = 15/92 (16%), Positives = 23/92 (25%), Gaps = 7/92 (7%)
Query: 505 VFTKP---LQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
V KP V+ + C R K + I HD
Sbjct: 4 VHRKPSLLAHPGPLVKSEETVILQCWSDVRFQ---HFLLHREGKFKDTLHLIGEHHDGVS 60
Query: 562 VA-MDLSHVRAEDEGIYICKATNALGEAVTTA 592
A + + + G Y C + +A
Sbjct: 61 KANFSIGPMMQDLAGTYRCYGSVTHSPYQLSA 92
Score = 30.3 bits (68), Expect = 2.2
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 348 KVTWLRNGVPIQASNRVSTMHDFGYVA-LNFKYTYPEDSGTYTCRAVNELGEAVTS 402
R G + + HD A + + +GTY C S
Sbjct: 36 HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLS 91
Score = 28.4 bits (63), Expect = 9.4
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 8/63 (12%)
Query: 350 TWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
R G + + + A +F GTY C + + S
Sbjct: 138 HLSREGEAHERRFSAGPKVNGTFQA-DFPLGPATHGGTYRCF-------GSFRDSPYEWS 189
Query: 410 KAS 412
+S
Sbjct: 190 NSS 192
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 30.1 bits (68), Expect = 0.85
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 27/113 (23%)
Query: 642 LTGTSEI--MEGQSA----HYD----------CRVVPVGDPTMRFEWFV---NGVELKMG 682
+TG E+ E S Y C+ VP V +L
Sbjct: 5 VTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCK----TLVETDASEQLVKK 60
Query: 683 SRFHVQHD--FGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVKSKS 732
+R ++ + T+ + +D+G+Y C I + G ++ +
Sbjct: 61 NRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC-GITKGGLDPMFKVTVNIGPVP 112
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 31.0 bits (70), Expect = 1.0
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV- 108
+ PK + L C + D +K W+ +G V +
Sbjct: 5 FLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTY 64
Query: 109 ----ALDIIDTIPEDSGTYTCRAVN 129
L ++ + Y C+ N
Sbjct: 65 RVVSVLTVLHQDWLNGKEYKCKVSN 89
Score = 29.1 bits (65), Expect = 4.1
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 647 EIMEGQSAHYDCRVV--PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV-----TLDIT 699
+M ++ C VV DP ++F W+V+GVE+ + + L +
Sbjct: 14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVL 73
Query: 700 KCVPADSGVYMCKA 713
+ Y CK
Sbjct: 74 HQDWLNGKEYKCKV 87
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2,
HSET2, phosphoctd associating protein, SET2
RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Length = 112
Score = 29.6 bits (66), Expect = 1.2
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 545 KPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
KP RITT DF ++A L+H E Y CK L ++K KTK
Sbjct: 39 KPDCKVGRITTTEDFKHLARKLTHGVMNKELKY-CKNPEDL---ECNENVKHKTK 89
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 662 PVGDPTMRFEWFVNGVELKMGSRFHVQHDFG--YVTLDITKCVPADSGVYMC 711
G+ E + + + L IT DS VY C
Sbjct: 40 ASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFC 91
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 30.8 bits (69), Expect = 1.6
Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 21/105 (20%)
Query: 516 VEEGKNAHFSCRL---IPVGDPTLKVEWFR----------------NEKPLEDSSRITTK 556
N C + P+ ++ + WF + + I +
Sbjct: 15 TPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSP 74
Query: 557 HDF--GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
G ++ L ++ E+ G Y C+ +A T +++
Sbjct: 75 WRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS 119
Score = 29.6 bits (66), Expect = 3.5
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 21/102 (20%)
Query: 198 GQRAHFECRL---IPVSDNTMKVEWF------------------HNNVPIKSGSRFTETN 236
C + P++ +M + WF H
Sbjct: 18 NDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRL 77
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
G +L + E++G Y C V +A + L V +
Sbjct: 78 KSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVAS 119
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 30.6 bits (69), Expect = 1.6
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 7/67 (10%)
Query: 75 EPVT---DSNLKVEWF---KNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128
+ VT N + G + P V I D +G Y+C
Sbjct: 19 KQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINK-VKFYIPDMNSRMAGQYSCIYR 77
Query: 129 NLVGFAE 135
++E
Sbjct: 78 VGELWSE 84
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 28.9 bits (64), Expect = 1.6
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 344 DSKLKVTWLRNGVPIQASN-RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNE 395
DS + W +NG + + + + DF V EDSG Y C
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYYVCYTPAS 67
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 29.5 bits (66), Expect = 1.6
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 21/116 (18%)
Query: 642 LTGTSEI--MEGQSA----HYD----------CRVVPVGDPTMRFEWFVNGVELKMGSRF 685
+TG + + +E S Y CR D + + + E+K R
Sbjct: 6 ITGPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRD-RV 64
Query: 686 HVQHD--FGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVKSKSDIVSES 738
++ + T+ + + D+ Y C I + G + + + + E+
Sbjct: 65 SIKDNQKNRTFTVTMEDLMKTDADTYWC-GIEKTGNDLGVTVQVTIDPAPVTQEET 119
Score = 28.4 bits (63), Expect = 4.7
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYT 124
RG +CK+ T + + K R V+I + + + D + D+ TY
Sbjct: 39 RGAIWRDCKILVKTSGS--EQEVKRDR-VSI--KDNQ--KNRTFTVTMEDLMKTDADTYW 91
Query: 125 CR 126
C
Sbjct: 92 CG 93
Score = 28.0 bits (62), Expect = 5.3
Identities = 12/105 (11%), Positives = 23/105 (21%), Gaps = 17/105 (16%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWF--------------HNNVPIKSGSRFTETNN--FGF 240
E +C T W + R + +N
Sbjct: 16 ERGSLTVQCVY-RSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRT 74
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTET 285
+ + + D+ Y C + + + Q ET
Sbjct: 75 FTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEET 119
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 31.0 bits (70), Expect = 1.6
Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 18/146 (12%)
Query: 577 YICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636
YIC + T K++ K+ + T P G + P+EP+
Sbjct: 196 YICNVNHKPSN--TKVDKKVEPKSCDKTHTCPPCGGG---SSGGGSGGQPREPQ------ 244
Query: 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG---- 692
L + + + C V + EW NG D
Sbjct: 245 --VYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFF 302
Query: 693 -YVTLDITKCVPADSGVYMCKAINRA 717
Y L + K V+ C ++ A
Sbjct: 303 LYSKLTVDKSRWQQGNVFSCSVMHEA 328
Score = 30.6 bits (69), Expect = 2.2
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFG--YVALDIIDTIPEDS----G 121
C ++ S++ VEW NG+P P+ D + + T+ +
Sbjct: 260 VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL-TVDKSRWQQGN 318
Query: 122 TYTCRAVN 129
++C ++
Sbjct: 319 VFSCSVMH 326
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 30.6 bits (69), Expect = 1.8
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 7/73 (9%)
Query: 75 EPVT---DSNLKVEWF---KNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128
+ VT N + G + +P V I D +G Y+C
Sbjct: 22 KQVTICCQGNYGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYR 80
Query: 129 NLVGFAEVQATLQ 141
++E L
Sbjct: 81 VGELWSEPSNLLD 93
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.0 bits (65), Expect = 1.9
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 78 TDSNLKVEWFKNGRPVTIGHRF--RPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
T + +E+ N F R + AL I + ED GTY R +
Sbjct: 41 TKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRVLR 94
Score = 28.3 bits (63), Expect = 4.1
Identities = 17/104 (16%), Positives = 24/104 (23%), Gaps = 15/104 (14%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN----VPIKSGSRFTETN----- 236
S+ + G + ++ W H + S T
Sbjct: 6 ARGSIPDINAYTGSNVTLKIH-KDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKG 64
Query: 237 ----NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
AL I ED G Y R V + L V
Sbjct: 65 RVYLEENNGALHISNVRKEDKGTYYMR-VLRETENELKITLEVF 107
Score = 28.3 bits (63), Expect = 4.1
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 15/93 (16%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNG----VELKMGSRFHVQHD-F-GYVTLD----- 697
G + P+G R W +E S + F G V L+
Sbjct: 16 YTGSNVTLKIHKDPLGPYR-RITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGA 74
Query: 698 --ITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
I+ D G Y + + R E +L+V
Sbjct: 75 LHISNVRKEDKGTYYMR-VLRETENELKITLEV 106
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 30.3 bits (68), Expect = 2.1
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVT--DSNLKVEWFKNGRPVTIGHRFRPIHDFG--Y 107
+ P + L C + V+ D ++++ WF N V D+
Sbjct: 13 FIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTI 72
Query: 108 VA---LDIIDTIPEDSGTYTCRA 127
L I + C+
Sbjct: 73 RVVSTLPIQHQDWMSGKEFKCKV 95
Score = 29.1 bits (65), Expect = 4.9
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 13/104 (12%)
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVG--DPTMRFEWFVNGVE 678
PA + P +F +M + C VV V DP ++ WFVN VE
Sbjct: 2 PAPNLEGGPS------VFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVE 55
Query: 679 LKMG--SRFHVQHDFGYV---TLDITKCVPADSGVYMCKAINRA 717
+ ++ TL I + CK N+
Sbjct: 56 VHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKD 99
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 29.4 bits (66), Expect = 2.3
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 675 NGVELKMGSRFHVQ-----HDFGYVTLDITKCVPADSGVYMCKAINRAGEAV----SSTS 725
+ +RF + HDF ++I DSG+Y+C AI+ +A
Sbjct: 62 GLSQPVQDARFQIIQLPNRHDF---HMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAE 118
Query: 726 LKVKSK 731
L V +
Sbjct: 119 LVVTER 124
Score = 28.6 bits (64), Expect = 4.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQ 137
++I+DT DSG Y C A++L A+++
Sbjct: 85 MNILDTRRNDSGIYLCGAISLHPKAKIE 112
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 29.0 bits (64), Expect = 2.7
Identities = 21/86 (24%), Positives = 27/86 (31%), Gaps = 18/86 (20%)
Query: 516 VEEGKNAHFSCRLIPVGDPT-LKVEWFR-----------------NEKPLEDSSRITTKH 557
A F C G T ++V R NE D S T
Sbjct: 13 ASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTS 72
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATN 583
V + + +RA D G+YICK
Sbjct: 73 SGNQVNLTIQGLRAMDTGLYICKVEL 98
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 29.5 bits (66), Expect = 3.4
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 348 KVTWLRNGVPIQASNRVSTMHDFGYVA-LNFKYTYPEDSGTYTCRAVNELGEAVTS 402
R G+ + HD A + + +GTY C S
Sbjct: 37 HFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVS 92
Score = 29.5 bits (66), Expect = 3.5
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 75 EPVT---DSNLKVEWF---KNGRPVTIGHRFRPIHDFGYVA-LDIIDTIPEDSGTYTCRA 127
E V S++ E F + G HD A I + +GTY C
Sbjct: 23 ETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG 82
Score = 29.1 bits (65), Expect = 4.5
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS--HVRAED 573
V+ + C D + E D+ R+ +H G + S + +
Sbjct: 19 VKSEETVILQCW----SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDL 74
Query: 574 EGIYICKATNALGEAVTTA 592
G Y C + +A
Sbjct: 75 AGTYRCYGSVTHSPYQVSA 93
Score = 28.3 bits (63), Expect = 6.8
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCR 391
R G + + + A +F GTY C
Sbjct: 138 YHLSREGEAHERRLPAGPKVNGTFQA-DFPLGPATHGGTYRCF 179
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 28.3 bits (63), Expect = 4.0
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 28/106 (26%)
Query: 647 EIMEGQSA----HYD-----------CRVVPVGDPTMRFEWFV------NGVELKMGSRF 685
E+ EGQ+ Y + P + R
Sbjct: 10 ELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMP----KTLACTERPSKNSHPVQVGRI 65
Query: 686 HVQHD--FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
++ G + + + DSG+Y C I + + +++
Sbjct: 66 ILEDYHDHGLLRVRMVNLQVEDSGLYQC-VIYQPPKEPHMLFDRIR 110
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 28.3 bits (63), Expect = 4.0
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 354 NGVPIQASNRVSTMHD--FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
G + + RVS + + ED+GTY C + + VE
Sbjct: 47 KGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVE 103
Score = 27.9 bits (62), Expect = 5.7
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 675 NGVELKMGSRFHVQHD--FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
G K R ++ T+ + D+G Y C + ++V+
Sbjct: 47 KGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVE 103
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 28.1 bits (63), Expect = 4.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 225 PIKSGSRFTETNNFG--FVALDIMQCLPEDSGVYTCRA 260
I G R+ ET + G +L I EDSG Y C+A
Sbjct: 48 TISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQA 85
Score = 28.1 bits (63), Expect = 5.0
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 78 TDSNL---KVEWFK------NGRPVTIGHRFRPIHDFG--YVALDIIDTIPEDSGTYTCR 126
D + W++ N + ++IG R+ D G +L I D EDSGTY C+
Sbjct: 25 KDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQ 84
Query: 127 A 127
A
Sbjct: 85 A 85
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 28.5 bits (64), Expect = 4.4
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 8/78 (10%)
Query: 662 PVGDPTMRFEWFVNGVELKMGSRFHVQHDFG--YVTLDITKCVPADSGVYMCKAINRAGE 719
G+ E + + + L IT DS VY C G
Sbjct: 40 ASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGG 99
Query: 720 AV------SSTSLKVKSK 731
+ + T L VK
Sbjct: 100 SGNKLIFGTGTLLSVKPG 117
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 29.1 bits (65), Expect = 4.6
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 52 TVTKPKSIENLRERGHAHFECKL--EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFG--Y 107
+ PK + L C + D +K W+ +G V + Y
Sbjct: 26 FLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTY 85
Query: 108 VA---LDIIDTIPEDSGTYTCRA 127
L ++ + Y C+
Sbjct: 86 RVVSVLTVLHQDWLNGKEYKCKV 108
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 28.1 bits (63), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQ 137
++I+DT DSG Y C A++L +++
Sbjct: 75 MNILDTRRNDSGIYLCGAISLHPKLKIE 102
Score = 27.3 bits (61), Expect = 9.5
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 683 SRFHVQ-----HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+RF + HDF ++I DSG+Y+C AI+ + S +
Sbjct: 60 ARFQIIQLPNRHDF---HMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAE 108
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein
structure initiative, PSI, BACI halodurans protein
BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP:
d.129.3.5
Length = 146
Score = 28.3 bits (63), Expect = 5.5
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 665 DPTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVP 703
WF+ N ++ + G FH+Q FG +T
Sbjct: 26 TSEGLAFWFMENDLKAETGHHFHLQSPFGPSPCQVTDVER 65
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 28.1 bits (63), Expect = 5.7
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH---NNVP---IKSGSRFTE 234
Q P F K F C ++++ + WF + P + R +
Sbjct: 21 WQHPRFAAK------KRSSMVKFHCY----TNHSGALTWFRKRGSQQPQELVSEEGRIVQ 70
Query: 235 TNNFGFVALDIMQCLPEDSGVYTC 258
T N L I ED+G+Y C
Sbjct: 71 TQNGSVYTLTIQNIQYEDNGIYFC 94
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC
phase, cell adhesion, disease mutation; HET: NAG; 2.10A
{Homo sapiens} PDB: 3gxe_B*
Length = 93
Score = 27.4 bits (60), Expect = 5.9
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 674 VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
V+ + + FH +H+ G++ C G + C +++ ++ + T ++
Sbjct: 5 VDDITYNVQDTFHKKHEEGHML--NCTCFGQGRGRWKCDPVDQCQDSETGTFYQI 57
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 29.2 bits (65), Expect = 6.1
Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 6/108 (5%)
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
+E ++ E + L ++ A + C VV W V
Sbjct: 277 KEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVA 336
Query: 676 GVELKMGSR--FHVQHD----FGYVTLDITKCVPADSGVYMCKAINRA 717
G G +H + L + + + C + +
Sbjct: 337 GKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPS 384
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 29.0 bits (65), Expect = 6.1
Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 39/184 (21%)
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
+ + + + I DSG Y C AT + S + ++ +D
Sbjct: 79 LRMILRNLIENDSGVYYC------------ATWDQNYYKKLFGSGTSLVVTDKQGSADDA 126
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF------- 220
K + + TQA + + C S + + W+
Sbjct: 127 KKDAAKKDGAQKVTQAQSSVSM------PVRKAVTLNCLY-ETSWWSYYIFWYKRLPSKE 179
Query: 221 -------HNNVPIKSGSRFTETNNFGF--VALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271
++ R++ VAL I EDS Y C ALG+++T
Sbjct: 180 MIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFC----ALGESLTRA 235
Query: 272 NLLV 275
+ L+
Sbjct: 236 DKLI 239
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments,
lipid binding, structural genomics, unknown FU PSI-2;
NMR {Bacillus subtilis subsp} PDB: 2kte_A
Length = 152
Score = 28.2 bits (63), Expect = 6.3
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 665 DPTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVP 703
+WF+ N +LK G FH+Q FG +
Sbjct: 31 TSEGIAKWFMPNDFQLKEGQEFHLQSPFGPSPCKVLAVQA 70
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 28.1 bits (63), Expect = 6.4
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKP-------LEDSSRITTKHDFGYVAMDLSHVRA 571
G C + + V W ++ + R+ + + + +R
Sbjct: 33 GFTVKMHCY---MNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRF 89
Query: 572 EDEGIYICKATNALGEAVT 590
ED GIY C+ V
Sbjct: 90 EDNGIYFCQQKCNNTSEVY 108
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 27.6 bits (62), Expect = 6.7
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFH------NNVPIKSGSRFTETNNFG--FVALDIMQC 248
G+ C L + W+ I G R++ET + G +L I
Sbjct: 14 TGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDL 73
Query: 249 LPEDSGVYTCRA 260
EDSG Y C+A
Sbjct: 74 RVEDSGTYKCKA 85
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.5 bits (61), Expect = 6.9
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 221 HNNVPIKSGSRFTETNN--FGFVALDIMQCLPEDSGVYTCR 259
V K R TN G ++I Q +DSG Y C
Sbjct: 53 EGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCG 93
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure
initiative, PSI, NESG target protein BCR68, alpha +
beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Length = 143
Score = 27.8 bits (62), Expect = 7.1
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 665 DPTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVP 703
WF+ N L++G FHVQ FG + +
Sbjct: 29 TAEGIASWFMPNDFVLEVGHEFHVQSPFGPSPCKVLEIDE 68
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 28.5 bits (63), Expect = 7.6
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 684 RFHVQHDFG--YVTLDITKCVPADSGVYMCKAINRAGEAV----SSTSLKVKSKSDIVSE 737
R + Y TL I DSG Y C A + + T L VK
Sbjct: 58 RLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEP 117
Query: 738 SL 739
++
Sbjct: 118 AV 119
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 27.9 bits (61), Expect = 7.8
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 17/87 (19%)
Query: 74 LEPVTDSNLKVEWFKNGRPVTI--GHRFRPIHDFGYVALDII---------------DTI 116
+E + + V+W GR + G + + + I
Sbjct: 28 MEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDA 87
Query: 117 PEDSGTYTCRAVNLVGFAEVQATLQCR 143
+G YTC L E L+ R
Sbjct: 88 VSHTGNYTCEVTELTREGETIIELKYR 114
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 28.4 bits (63), Expect = 8.1
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 6 SPPNPQDSSPYLSSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRER 65
S +DS+ Y + Q + ++ +P S + +
Sbjct: 80 SALELEDSAMYFCASSLRWGDEQYFGPGTR-LTVLEDLRNVTPPKVSLFEP-SKAEIANK 137
Query: 66 GHAHFECKLEPVTDSNLKVEWFKNGRPVTIG 96
A C ++++ W+ NG+ V G
Sbjct: 138 QKATLVCLARGFFPDHVELSWWVNGKEVHSG 168
>4d8p_B Peptide from gamma-gliadin, linker, MHC class II; class II MHC,
immune system; 3.05A {Triticum aestivum}
Length = 250
Score = 28.2 bits (63), Expect = 9.0
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 14/113 (12%)
Query: 292 SRLQQLEQGRYQ-----RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI-PVGD- 344
S+ LE+ R R + + + +P I + +A + L+ V D
Sbjct: 96 SQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDF 155
Query: 345 --SKLKVTWLRNGVPIQASNRVSTMH----DFGYVALNFKYTYPEDSGTYTCR 391
+++KV W RN + + VST D+ + L P+ YTC
Sbjct: 156 YPAQIKVRWFRNDQE-ETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCH 207
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 27.9 bits (62), Expect = 9.2
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 16/94 (17%)
Query: 660 VVPVGDP-------TMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712
+VP+ P + + + + + +G Y C
Sbjct: 18 LVPLEKPVTLRCQGPPGVDLYRLEKLSSSRYQDQAVLFIPAMK-------RSLAGRYRCS 70
Query: 713 AINRAGEAVSSTSLK--VKSKSDIVSESLQPDAW 744
N + ++ S L+ S S QP
Sbjct: 71 YQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPA 104
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 28.1 bits (62), Expect = 9.6
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 674 VNGVELKMGSRFHVQHD--FGYVTLDITKCVPADSGVYMCKAINR 716
V+ + R+ D + TL IT + D+ Y C +R
Sbjct: 51 VDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDR 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.380
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,955,793
Number of extensions: 711433
Number of successful extensions: 4769
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3270
Number of HSP's successfully gapped: 1621
Length of query: 808
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 707
Effective length of database: 3,881,772
Effective search space: 2744412804
Effective search space used: 2744412804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.7 bits)