BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2148
(1884 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 124/601 (20%), Positives = 215/601 (35%), Gaps = 82/601 (13%)
Query: 105 VFDSPVFISHLNDVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHN 164
+ P FI L VE E + C+V D T PE+++ W+
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKV----DGT---------------PEIRIAWYKE 42
Query: 165 GKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCQ-------------WFVNNKPLPA 211
+ KM + I V D GEY C+ + + LP
Sbjct: 43 HTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPP 102
Query: 212 --GAKFKTTHDFGYVALDIELMLKTLVPF-TEWFVNNKPLPAGAKFKTTHDFGYVALDIV 268
K K H+ + E + P W+ + + L A +T+ L I+
Sbjct: 103 SFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQIL 162
Query: 269 GAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLS-NLSEGEIAH 327
G Y A+N G+A++S L E H P F + +S +L+ GE
Sbjct: 163 QTDQSHVGQYNCSASNPLGTASSSAKLTLSE-----HEVPPF-FDLKPVSVDLALGESGT 216
Query: 328 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
F+ + G + + + + + I + L +L D G YTC A+N
Sbjct: 217 FKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 274
Query: 388 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 447
G+ S L +PP+F ++ +K + +EC + PE+KV W+
Sbjct: 275 VAGKDSCSAQL-----GVQEPPRFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYK 327
Query: 448 NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLP 507
+ I ++ +M V+++ + DSG+Y C A N + +
Sbjct: 328 DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF 387
Query: 508 SPSQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMD 567
++ + VH +C L+ P ++ W + R +G + K + + S+ +
Sbjct: 388 RKKPHPVETLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHIL 445
Query: 568 YVYARDSGEYICRATNKWGTAMTKAKVICK-----------VLTVI-------------- 602
V + D GEY C+A+N G+ + K + TV+
Sbjct: 446 NVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAE 505
Query: 603 ---VEWFYN-GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
V WF + G+ + + I L N+G Y C+ N+ G+ A+
Sbjct: 506 PISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFAT 565
Query: 659 L 659
L
Sbjct: 566 L 566
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 139/607 (22%), Positives = 227/607 (37%), Gaps = 106/607 (17%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCT 66
P ++I W+K L + F + +L IN + D YTCKA N +G S+
Sbjct: 33 PEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAV 92
Query: 67 LKIEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKENENV 126
L I++R LP P F L DV V
Sbjct: 93 LVIKERK-----------LP----------------------PSFARKLKDVHETLGFPV 119
Query: 127 HFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD 186
F+CR+ S+ L+V W+ +G+ + K+ + + F V
Sbjct: 120 AFECRINGSEP-------------------LQVSWYKDGELL--KDDANLQTSFIHNVAT 158
Query: 187 IAYVQSHDS--GEYVCQWFVNNKPLPAGAKFKTT---------HDFGYVALDIEL----M 231
+ +Q+ S G+Y C +N A + K T D V++D+ L
Sbjct: 159 LQILQTDQSHVGQYNCS--ASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGT 216
Query: 232 LKTLVPFTE-----WFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSK 286
K V T W +N+ + G +K T L ++ D+G YT A+N
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 287 GSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 346
G + S L E P F + + + + E +E + G + V +
Sbjct: 277 GKDSCSAQLGVQEP-------PRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYK 327
Query: 347 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 406
+ I+ S + R + VLE+ +ED+G YTC A N G A S +L+
Sbjct: 328 DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-----K 382
Query: 407 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 466
+PP F +E LK D H EC L P +V W + + + + K++S+
Sbjct: 383 EPPVFRKKPHPVETLKGAD-VHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFL 439
Query: 467 VVMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQ-----DNLDVPEAGK 521
+ I V S D GEY C+A N+ I L +P + ++ +
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGSDTCVG-----SITLKAPPRFVKKLSDISTVVGEE 494
Query: 522 VHFDCRLEPKSDPTMRIDWFFN-GRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICR 580
V +E ++P + + WF + G + Y +L ++G+Y C+
Sbjct: 495 VQLQATIE-GAEP-ISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQ 552
Query: 581 ATNKWGT 587
N+ GT
Sbjct: 553 IKNEAGT 559
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 117/531 (22%), Positives = 190/531 (35%), Gaps = 118/531 (22%)
Query: 1325 HAVIFSHPIFDLGF----VSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQ 1380
H + S P + + F SL I+ V D GEY C+A N G + A + K
Sbjct: 43 HTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK------ 96
Query: 1381 LQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEM 1440
E+K PP F ++K + +
Sbjct: 97 ---------------------------------------ERKLPPSFARKLKDVHETLGF 117
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLC 1500
FEC++ G ++V W+ +G+ L + + G+Y C
Sbjct: 118 -PVAFECRIN--GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174
Query: 1501 RATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPK 1560
A+N G + A L L E E P
Sbjct: 175 SASNPLGTASSSAKL------------------------------------TLSEHEVP- 197
Query: 1561 EAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI-----VNEIVRKITATE 1615
P F +P + + GE F VTG ++ W + I + + TAT
Sbjct: 198 --PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 255
Query: 1616 TTEMEHKGKIQERVVDASEKPAK-----------PPVFTKKIQPCRAFEQDQ-ARFEVEF 1663
T KG + AS K PP F KK++P R +QD+ R+E +
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 315
Query: 1664 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 1723
G P + W++++ I S F++ + ++L M + +EDSG + A N G A
Sbjct: 316 GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS 375
Query: 1724 SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKI 1783
S +L V+E PP F G + ++ T P V W K+ +++
Sbjct: 376 STSLKVKE----------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 425
Query: 1784 IPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
+YK + E+ L ++ I+ D G Y+C A N+ G C + +++
Sbjct: 426 RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA 476
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 119/296 (40%), Gaps = 34/296 (11%)
Query: 1561 EAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHT---------------IVN 1605
E P F+ E + GEP +V G P R+ W HT + +
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWY-KEHTKLRSAPAYKMQFKNNVAS 62
Query: 1606 EIVRKITATETTEMEHK-----GKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFE 1660
++ K+ ++ E K G + V ++ PP F +K++ FE
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 1661 VEFDGDPLPTIKWFREDFPITSSPDFQ---IHTFSTKSILIMRQVFMEDSGVFAVIAENR 1717
+G + W+++ + + Q IH +T IL Q + G + A N
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHV---GQYNCSASNP 179
Query: 1718 GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWL 1777
G A SA L + E VPP F S + +G+ F ++ T P+ + W
Sbjct: 180 LGTASSSAKLTLSEHE-------VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA 232
Query: 1778 KNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
K+ ++I P YK +N TL +++ D+G Y C A N AG+ C A+L VQ
Sbjct: 233 KDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 112/521 (21%), Positives = 185/521 (35%), Gaps = 99/521 (19%)
Query: 522 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRA 581
+ C+++ P +RI W+ + K + SL ++ V D GEY C+A
Sbjct: 23 ITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKA 80
Query: 582 TNKWGTAMTKAKVI----------------------------CKV---LTVIVEWFYNGK 610
N G + A ++ C++ + V W+ +G+
Sbjct: 81 ENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGE 140
Query: 611 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE 670
L +T + L IL + + G Y C A+N G+ + A L
Sbjct: 141 LLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL----------- 189
Query: 671 SQLPEGMEGGLEKIQTLEDAAHLRRTETADIEHRQAPVFTVPLSNIDDLREGENAHFEAR 730
TL EH P F + ++D L GE+ F+
Sbjct: 190 ---------------TLS-------------EHEVPPFFDLKPVSVD-LALGESGTFKCH 220
Query: 731 LTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGE 790
+T T +K+ W + + ++ G ++ L + V D GQY+C A N G+
Sbjct: 221 VTGT--APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 791 AVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPED-CGQYSCRAYNDYGEAVTS 849
SA + VQ + P+ FI E S + +D +Y C+ S
Sbjct: 279 DSCSAQLGVQ---------EPPR----FIKKLEPSRIVKQDEHTRYECKIGG-------S 318
Query: 850 ASMKVQGKRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRI 909
+KV + + K ++ +A LE Y ED D E
Sbjct: 319 PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG-DYTCEAHNAAGSASSST 377
Query: 910 EEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN 969
+ + P F P + + H EC L T P V W + + L +G + K ++
Sbjct: 378 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGT--PPFQVSWHKDKRELRSGKKYKIMS 435
Query: 970 DFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKG 1010
+ + I +V D G Y CKA+N G T +T+K
Sbjct: 436 ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA 476
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/412 (20%), Positives = 157/412 (38%), Gaps = 86/412 (20%)
Query: 9 LKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCTLK 68
+KI W K+ + G + T TL++ + D+ YTC A+N+ G+ + L
Sbjct: 227 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286
Query: 69 IEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKENENVHF 128
++ E P+ ++K EP + K++E+ +
Sbjct: 287 VQ---------------------EPPRFIKKLEPSRIV--------------KQDEHTRY 311
Query: 129 DCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIA 188
+C++ S PE+KV W+ + I ++ +M V+++
Sbjct: 312 ECKIGGS-------------------PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMY 352
Query: 189 YVQSHDSGEYVCQWFVNNKPLPAGAKFKT------------THDFGYVALDIELMLKTLV 236
+ DSG+Y C+ + K + +E L+
Sbjct: 353 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP 412
Query: 237 PF-TEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSG-- 293
PF W + + L +G K+K + ++ I+ + D G Y KA+N GS T G
Sbjct: 413 PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI 472
Query: 294 TLKCLERLFVNHNYPLFSLQFQHLSNLSE--GEIAHFEASLIPVGDQTMTVEFLYN-GKP 350
TLK R + LS++S GE +A++ G + ++V + + G+
Sbjct: 473 TLKAPPRF------------VKKLSDISTVVGEEVQLQATI--EGAEPISVAWFKDKGEI 518
Query: 351 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 402
+ S I ++ + L+ + + G YTC+ N+ G E L ++
Sbjct: 519 VRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 116/560 (20%), Positives = 204/560 (36%), Gaps = 134/560 (23%)
Query: 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662
+ W+ KL Y+ + L I + G Y C+A N G+ + A L
Sbjct: 37 IAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVL--- 93
Query: 663 SKTNLILESQLPEGMEGGLEKIQTLEDAAHLRRTETADIEHRQAPVFTVPLSNIDDLREG 722
+I E +LP P F L ++ + G
Sbjct: 94 ----VIKERKLP--------------------------------PSFARKLKDVHETL-G 116
Query: 723 ENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSC 782
FE R+ ++ L+V W+ +G+ +K + +T L+I GQY+C
Sbjct: 117 FPVAFECRINGSE--PLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174
Query: 783 RAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPE----DCGQYSCR 838
A N G A S+S K+ + E ++P F ++ PV + + G + C
Sbjct: 175 SASNPLGTA--SSSAKL-----TLSEHEVP-------PFFDLKPVSVDLALGESGTFKCH 220
Query: 839 AYNDYGEAVTSAS----MKVQGKRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDK 894
+T A ++ G + L ++ A L + D
Sbjct: 221 VTGTAPIKITWAKDNREIRPGGNYKMTL-----------VENTATLTVLKVTKGD----- 264
Query: 895 IAELEGYGHE--REDRIEEDLG--KAPEFLTT--PTDLTLAESTLAHFECRLTPTNDPSM 948
+ Y +D LG + P F+ P+ + + + +EC++ P +
Sbjct: 265 AGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI-VKQDEHTRYECKIG--GSPEI 321
Query: 949 TVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
V W+ + + S+ + +LE+ ++ + DSG YTC+A N G A++S L V
Sbjct: 322 KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381
Query: 1009 KGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPE 1068
K EP V +RK KP+P ++ +
Sbjct: 382 K-------EPPV------------------FRK--------KPHP----------VETLK 398
Query: 1069 AGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYI 1128
VH +C L+ P ++ W + R +G + K + + S+ + V + D GEY
Sbjct: 399 GADVHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQ 456
Query: 1129 CRATNKWGTAMTKAKVICKA 1148
C+A+N G+ + KA
Sbjct: 457 CKASNDVGSDTCVGSITLKA 476
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 81/212 (38%), Gaps = 50/212 (23%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995
+C++ T P + + W+ L + K L IN V D G YTCKA N
Sbjct: 25 LQCKVDGT--PEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
G +S L +K R KL PP
Sbjct: 83 SVGAVASSAVLVIKER---------------------KL------------------PPS 103
Query: 1056 FTSQLQD---NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFI 1112
F +L+D L P V F+CR+ S+P +++ W+ +G + ++T +
Sbjct: 104 FARKLKDVHETLGFP----VAFECRIN-GSEP-LQVSWYKDGELLKDDANLQTSFIHNVA 157
Query: 1113 SLDMDYVYARDSGEYICRATNKWGTAMTKAKV 1144
+L + G+Y C A+N GTA + AK+
Sbjct: 158 TLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 1738 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNL 1797
G + PP F+ + +G+ K+ T + + W K K+ YK ++N+
Sbjct: 1 GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV 60
Query: 1798 FTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTV 1857
+L+I + D G Y C A N+ G A LV++ P+
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL----------------PPSF 104
Query: 1858 AEPLKDQNVKEGSAVTLKCRITG 1880
A LKD + G V +CRI G
Sbjct: 105 ARKLKDVHETLGFPVAFECRING 127
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 115/310 (37%), Gaps = 71/310 (22%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVST 64
P +K+ W+K+ + S+ R +F + L + +L +DS YTC+A N G A S+
Sbjct: 317 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 376
Query: 65 CTLKIEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKENE 124
+LK++ EP PVF + VE +
Sbjct: 377 TSLKVK------------------------------EP------PVFRKKPHPVETLKGA 400
Query: 125 NVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 184
+VH +C ++ + P +V W + + + + K++S+
Sbjct: 401 DVHLECELQGT-------------------PPFQVSWHKDKRELRSGKKYKIMSENFLTS 441
Query: 185 MDIAYVQSHDSGEYVCQW--------FVNNKPLPAGAKF-KTTHDFGYVALDIELMLKTL 235
+ I V S D GEY C+ V + L A +F K D V + E+ L+
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGE-EVQLQAT 500
Query: 236 VPFTE-----WFVNNKPLPAGA-KFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSA 289
+ E WF + + + ++ L A ++G YT + N G+
Sbjct: 501 IEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQ 560
Query: 290 TTSGTLKCLE 299
TL LE
Sbjct: 561 ECFATLSVLE 570
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFI 1112
PP F L+ +++ + C+++ P +RI W+ + K +
Sbjct: 5 PPYFIEPLE-HVEAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 1113 SLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKEL 1170
SL ++ V D GEY C+A N G + A ++ K E +LP S A KLK++
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK-------ERKLPPSF-ARKLKDV 111
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGF 764
+ P F PL +++ GE + ++ T P++++ W+ +++ ++
Sbjct: 4 EPPYFIEPLEHVEAAI-GEPITLQCKVDGT--PEIRIAWYKEHTKLRSAPAYKMQFKNNV 60
Query: 765 VILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLP 812
L I+ V D G+Y+C+A N G +SA + +I E +LP
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVL-------VIKERKLP 101
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGE- 60
E + P ++ W K+ L G + + + L ++ I ++ + D Y CKA+N +G
Sbjct: 407 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSD 466
Query: 61 -AVSTCTLKIEDR 72
V + TLK R
Sbjct: 467 TCVGSITLKAPPR 479
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 101 bits (251), Expect = 4e-21, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 9/198 (4%)
Query: 1638 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTKS 1695
+ P FT+ +Q E A FE G P+P + WFR+ I++S P QI ++
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 1696 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 1755
L + V +SG +++ A N G+A +A L+V+ + PP+F+ + S +
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-------TAPPNFVQRLQSMTVR 116
Query: 1756 VGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYEC 1815
G R +++ V + ++G +I + ++ +E +L++LLI EA EDSG Y
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 1816 VAMNNAGEARCEAELVVQ 1833
A N+ G A AEL+VQ
Sbjct: 177 NATNSVGRATSTAELLVQ 194
Score = 80.1 bits (196), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 1561 EAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIV-----------R 1609
+AP F ++ V EG A F ++G+P P V W +G I +
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 1610 KITATETTEMEHKGKIQERVVDAS-----------EKPAKPPVFTKKIQPCRAFEQDQAR 1658
K+T T+ + G+ + + S + PP F +++Q + Q R
Sbjct: 64 KLTIPAVTK-ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVR 122
Query: 1659 FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 1718
+V G P P +K++R+ I SS DFQI L++ + + EDSG ++V A N
Sbjct: 123 LQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSV 182
Query: 1719 GKAKCSANLVVE 1730
G+A +A L+V+
Sbjct: 183 GRATSTAELLVQ 194
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 46/194 (23%)
Query: 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDF-- 762
QAP FT PL ++ L EG A FEA ++ P+ V WF +G+ + T + F
Sbjct: 4 QAPTFTQPLQSVVVL-EGSTATFEAHISGFPVPE--VSWFRDGQVISTSTLPGVQISFSD 60
Query: 763 GFVILEISPVYPEDCGQYSCRAYNDYGEAVTSA------------------SMKVQGKRS 804
G L I V + G+YS +A N G+A ++A SM V+
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 805 IILESQLPKGMEVFISFHE-----------------------ISPVYPEDCGQYSCRAYN 841
+ L+ ++ + F+ I+ YPED G YS A N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 842 DYGEAVTSASMKVQ 855
G A ++A + VQ
Sbjct: 181 SVGRATSTAELLVQ 194
Score = 54.3 bits (129), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKI----IPDIRYKTLEEDNLF 1798
P+F + S V+ G A F+A IS +V W ++G+ I +P ++ D
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF--SDGRA 63
Query: 1799 TLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTVA 1858
L I +SG Y A N +G+A AEL+V++ P
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA----------------PPNFV 107
Query: 1859 EPLKDQNVKEGSAVTLKCRITGKP 1882
+ L+ V++GS V L+ R+TG P
Sbjct: 108 QRLQSMTVRQGSQVRLQVRVTGIP 131
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 91/241 (37%), Gaps = 58/241 (24%)
Query: 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF--G 972
+AP F + + E + A FE ++ P V WF +G+ +S + F G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 973 FVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQ 1032
L I V +SG Y+ KATN G+AT++ +L VK
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA------------------- 102
Query: 1033 KLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFF 1092
PP F +LQ ++ V + +V R+ P ++
Sbjct: 103 --------------------PPNFVQRLQ-SMTVRQGSQVRLQVRVTGIPTPVVKF---- 137
Query: 1093 NGRPFATGSRVKTVYDF------GFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVIC 1146
+ G+ +++ DF SL + Y DSG Y ATN G A + A+++
Sbjct: 138 ----YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Query: 1147 K 1147
+
Sbjct: 194 Q 194
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 236 VPFTEWF-----VNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSAT 290
VP WF ++ LP + + G L I +SG Y++KATN G AT
Sbjct: 34 VPEVSWFRDGQVISTSTLPG---VQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT 90
Query: 291 TSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 350
++ L + P F + Q ++ + +G + + G T V+F +G
Sbjct: 91 STAEL----LVKAETAPPNFVQRLQSMT-VRQGSQVRLQVRV--TGIPTPVVKFYRDGAE 143
Query: 351 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 398
I++S + + L I ED+G Y+ ATN G+A + L
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 78/203 (38%), Gaps = 50/203 (24%)
Query: 603 VEWFYNGK-----KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
V WF +G+ LP +F D G L I + NSG Y +ATN G + A
Sbjct: 37 VSWFRDGQVISTSTLPGVQI--SFSD-GRAKLTIPAVTKANSGRYSLKATNGSGQATSTA 93
Query: 658 SLKCVSKTNLILESQLPEGMEGGLEKIQTLEDAAHLRRTETADIEHRQAPVFTVPLSNID 717
L L + ETA P F L ++
Sbjct: 94 EL---------------------------------LVKAETA------PPNFVQRLQSMT 114
Query: 718 DLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDC 777
+R+G + R+T P +K ++ +G +++ F+ + L I+ YPED
Sbjct: 115 -VRQGSQVRLQVRVTGIPTPVVK--FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDS 171
Query: 778 GQYSCRAYNDYGEAVTSASMKVQ 800
G YS A N G A ++A + VQ
Sbjct: 172 GTYSVNATNSVGRATSTAELLVQ 194
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 22/202 (10%)
Query: 407 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR--VKMVSDF 464
Q P FT ++S+ L +G +A FE ++ PE V WF +G+ I V++
Sbjct: 4 QAPTFTQPLQSVVVL-EGSTATFEAHISGFPVPE--VSWFRDGQVISTSTLPGVQISFSD 60
Query: 465 GFVVMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPS---PSQDNLDVPEAGK 521
G + I V +SG Y +A N P ++ V + +
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 522 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDF------GFISLDMDYVYARDSG 575
V R+ P ++ + G+ +++ DF SL + Y DSG
Sbjct: 121 VRLQVRVTGIPTPVVKF--------YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSG 172
Query: 576 EYICRATNKWGTAMTKAKVICK 597
Y ATN G A + A+++ +
Sbjct: 173 TYSVNATNSVGRATSTAELLVQ 194
Score = 40.4 bits (93), Expect = 0.010, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 33/159 (20%)
Query: 534 PTMRIDWFFNGRPFATGSR--VKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK 591
P + WF +G+ +T + V+ + G L + V +SG Y +ATN G A +
Sbjct: 33 PVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST 92
Query: 592 AKVICK-------------------------------VLTVIVEWFYNGKKLPHGHRYRT 620
A+++ K + T +V+++ +G ++ ++
Sbjct: 93 AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQI 152
Query: 621 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+ + L I Y E+SG Y ATN G + A L
Sbjct: 153 SQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 37.4 bits (85), Expect = 0.077, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSR--VKTVYDFGF 1111
P FT LQ ++ V E F+ + P + WF +G+ +T + V+ + G
Sbjct: 6 PTFTQPLQ-SVVVLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 1112 ISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAK 1149
L + V +SG Y +ATN G A + A+++ KA+
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE 100
Score = 35.4 bits (80), Expect = 0.27, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 1424 PPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYV 1483
PP FV ++++ + Q ++ Q+ G P V+++ +G + F +
Sbjct: 103 PPNFVQRLQS---MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLY 159
Query: 1484 AMNFGWVYPEDSGEYLCRATNLYGMDETRAIL 1515
++ YPEDSG Y ATN G + A L
Sbjct: 160 SLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 35.0 bits (79), Expect = 0.39, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 7 PNLKIEWFKNGVPLSLGSR--IRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVST 64
P ++ WF++G +S + ++ +F G L+I ++ +S Y+ KATN G+A ST
Sbjct: 33 PVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST 92
Query: 65 CTLKIE 70
L ++
Sbjct: 93 AELLVK 98
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 23 GSRIRSTFDF------GLVTLSINSLRADDSAIYTCKATNLLGEAVSTCTLKIE 70
G+ I+S+ DF L +L I +DS Y+ ATN +G A ST L ++
Sbjct: 141 GAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With
Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex With
Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 100 bits (250), Expect = 6e-21, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 9/198 (4%)
Query: 1638 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTKS 1695
+ P FT+ +Q E A FE G P+P + WFR+ I++S P QI ++
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 1696 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 1755
L + V +SG +++ A N G+A +A L+V+ + PP+F+ + S +
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-------TAPPNFVQRLQSMTVR 116
Query: 1756 VGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYEC 1815
G R +++ V + ++G +I + ++ +E +L++LLI EA EDSG Y
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 1816 VAMNNAGEARCEAELVVQ 1833
A N+ G A AEL+VQ
Sbjct: 177 NATNSVGRATSTAELLVQ 194
Score = 79.7 bits (195), Expect = 2e-14, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 1561 EAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIV-----------R 1609
+AP F ++ V EG A F ++G+P P V W +G I +
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 1610 KITATETTEMEHKGKIQERVVDAS-----------EKPAKPPVFTKKIQPCRAFEQDQAR 1658
K+T T+ + G+ + + S + PP F +++Q + Q R
Sbjct: 64 KLTIPAVTK-ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVR 122
Query: 1659 FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 1718
+V G P P +K++R+ I SS DFQI L++ + + EDSG ++V A N
Sbjct: 123 LQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSV 182
Query: 1719 GKAKCSANLVVE-EKRQ 1734
G+A +A L+V+ E R+
Sbjct: 183 GRATSTAELLVQGETRE 199
Score = 58.2 bits (139), Expect = 5e-08, Method: Composition-based stats.
Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 46/196 (23%)
Query: 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDF-- 762
QAP FT PL ++ L EG A FEA ++ P+ V WF +G+ + T + F
Sbjct: 4 QAPTFTQPLQSVVVL-EGSTATFEAHISGFPVPE--VSWFRDGQVISTSTLPGVQISFSD 60
Query: 763 GFVILEISPVYPEDCGQYSCRAYNDYGEAVTSA------------------SMKVQGKRS 804
G L I V + G+YS +A N G+A ++A SM V+
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 805 IILESQLPKGMEVFISFHE-----------------------ISPVYPEDCGQYSCRAYN 841
+ L+ ++ + F+ I+ YPED G YS A N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 842 DYGEAVTSASMKVQGK 857
G A ++A + VQG+
Sbjct: 181 SVGRATSTAELLVQGE 196
Score = 53.9 bits (128), Expect = 9e-07, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKI----IPDIRYKTLEEDNLF 1798
P+F + S V+ G A F+A IS +V W ++G+ I +P ++ D
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF--SDGRA 63
Query: 1799 TLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTVA 1858
L I +SG Y A N +G+A AEL+V++ P
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA----------------PPNFV 107
Query: 1859 EPLKDQNVKEGSAVTLKCRITGKP 1882
+ L+ V++GS V L+ R+TG P
Sbjct: 108 QRLQSMTVRQGSQVRLQVRVTGIP 131
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 56/243 (23%), Positives = 92/243 (37%), Gaps = 58/243 (23%)
Query: 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF--G 972
+AP F + + E + A FE ++ P V WF +G+ +S + F G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 973 FVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQ 1032
L I V +SG Y+ KATN G+AT++ +L VK
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA------------------- 102
Query: 1033 KLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFF 1092
PP F +LQ ++ V + +V R+ P ++
Sbjct: 103 --------------------PPNFVQRLQ-SMTVRQGSQVRLQVRVTGIPTPVVKF---- 137
Query: 1093 NGRPFATGSRVKTVYDF------GFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVIC 1146
+ G+ +++ DF SL + Y DSG Y ATN G A + A+++
Sbjct: 138 ----YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Query: 1147 KAK 1149
+ +
Sbjct: 194 QGE 196
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/205 (25%), Positives = 80/205 (39%), Gaps = 50/205 (24%)
Query: 603 VEWFYNGK-----KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
V WF +G+ LP +F D G L I + NSG Y +ATN G + A
Sbjct: 37 VSWFRDGQVISTSTLPGVQI--SFSD-GRAKLTIPAVTKANSGRYSLKATNGSGQATSTA 93
Query: 658 SLKCVSKTNLILESQLPEGMEGGLEKIQTLEDAAHLRRTETADIEHRQAPVFTVPLSNID 717
L L + ETA P F L ++
Sbjct: 94 EL---------------------------------LVKAETA------PPNFVQRLQSMT 114
Query: 718 DLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDC 777
+R+G + R+T P +K ++ +G +++ F+ + L I+ YPED
Sbjct: 115 -VRQGSQVRLQVRVTGIPTPVVK--FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDS 171
Query: 778 GQYSCRAYNDYGEAVTSASMKVQGK 802
G YS A N G A ++A + VQG+
Sbjct: 172 GTYSVNATNSVGRATSTAELLVQGE 196
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 15/168 (8%)
Query: 236 VPFTEWF-----VNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSAT 290
VP WF ++ LP + + G L I +SG Y++KATN G AT
Sbjct: 34 VPEVSWFRDGQVISTSTLPG---VQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT 90
Query: 291 TSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 350
++ L L P +Q + +G + + G T V+F +G
Sbjct: 91 STAEL-----LVKAETAPPNFVQRLQSMTVRQGSQVRLQVRV--TGIPTPVVKFYRDGAE 143
Query: 351 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 398
I++S + + L I ED+G Y+ ATN G+A + L
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 22/202 (10%)
Query: 407 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR--VKMVSDF 464
Q P FT ++S+ L +G +A FE ++ PE V WF +G+ I V++
Sbjct: 4 QAPTFTQPLQSVVVL-EGSTATFEAHISGFPVPE--VSWFRDGQVISTSTLPGVQISFSD 60
Query: 465 GFVVMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPS---PSQDNLDVPEAGK 521
G + I V +SG Y +A N P ++ V + +
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 522 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDF------GFISLDMDYVYARDSG 575
V R+ P ++ + G+ +++ DF SL + Y DSG
Sbjct: 121 VRLQVRVTGIPTPVVKF--------YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSG 172
Query: 576 EYICRATNKWGTAMTKAKVICK 597
Y ATN G A + A+++ +
Sbjct: 173 TYSVNATNSVGRATSTAELLVQ 194
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 33/159 (20%)
Query: 534 PTMRIDWFFNGRPFATGSR--VKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK 591
P + WF +G+ +T + V+ + G L + V +SG Y +ATN G A +
Sbjct: 33 PVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST 92
Query: 592 AKVICK-------------------------------VLTVIVEWFYNGKKLPHGHRYRT 620
A+++ K + T +V+++ +G ++ ++
Sbjct: 93 AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQI 152
Query: 621 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+ + L I Y E+SG Y ATN G + A L
Sbjct: 153 SQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 1424 PPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYV 1483
PP FV ++++ + Q ++ Q+ G P V+++ +G + F +
Sbjct: 103 PPNFVQRLQS---MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLY 159
Query: 1484 AMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGK 1520
++ YPEDSG Y ATN G + A L G+
Sbjct: 160 SLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQGE 196
Score = 34.7 bits (78), Expect = 0.46, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 7 PNLKIEWFKNGVPLSLGSR--IRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVST 64
P ++ WF++G +S + ++ +F G L+I ++ +S Y+ KATN G+A ST
Sbjct: 33 PVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST 92
Query: 65 CTLKIE 70
L ++
Sbjct: 93 AELLVK 98
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 23 GSRIRSTFDF------GLVTLSINSLRADDSAIYTCKATNLLGEAVSTCTLKIE 70
G+ I+S+ DF L +L I +DS Y+ ATN +G A ST L ++
Sbjct: 141 GAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 27/289 (9%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI-----VNEIVRKITATETT 1617
P F +P + + GE F VTG ++ W + I + + TAT T
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 1618 EMEHKGKIQERVVDASEKPAK-----------PPVFTKKIQPCRAFEQDQ-ARFEVEFDG 1665
KG + AS K PP F KK++P R +QD+ R+E + G
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 1666 DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA 1725
P + W++++ I S F++ + ++L M + +EDSG + A N G A S
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 1726 NLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIP 1785
+L V+E PP F G + ++ T P V W K+ +++
Sbjct: 186 SLKVKE----------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235
Query: 1786 DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
+YK + E+ L ++ I+ D G Y+C A N+ G C + +++
Sbjct: 236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 115/280 (41%), Gaps = 12/280 (4%)
Query: 308 PLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 367
P F L+ + +L+ GE F+ + G + + + + + I +
Sbjct: 6 PFFDLKPVSV-DLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 368 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 427
L +L D G YTC A+N G+ S L +PP+F ++ +K +
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQL-----GVQEPPRFIKKLEPSRIVKQDEHT 117
Query: 428 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW 487
+EC + PE+KV W+ + I ++ +M V+++ + DSG+Y C A
Sbjct: 118 RYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 175
Query: 488 NNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPF 547
N + + ++ + VH +C L+ P ++ W + R
Sbjct: 176 NAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ--GTPPFQVSWHKDKREL 233
Query: 548 ATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT 587
+G + K + + S+ + V + D GEY C+A+N G+
Sbjct: 234 RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 17/249 (6%)
Query: 241 WFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLER 300
W +N+ + G +K T L ++ D+G YT A+N G + S L E
Sbjct: 39 WAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 98
Query: 301 LFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 360
P F + + + + E +E + G + V + + I+ S + R
Sbjct: 99 -------PRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKFRMS 149
Query: 361 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEG 420
+ VLE+ +ED+G YTC A N G A S +L+ +PP F +E
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-----KEPPVFRKKPHPVET 204
Query: 421 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSG 480
LK D H EC L P +V W + + + + K++S+ + I V S D G
Sbjct: 205 LKGAD-VHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 261
Query: 481 EYVCRAWNN 489
EY C+A N+
Sbjct: 262 EYQCKASND 270
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 115/294 (39%), Gaps = 26/294 (8%)
Query: 718 DLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDC 777
DL GE+ F+ +T T +K+ W + + ++ G ++ L + V D
Sbjct: 16 DLALGESGTFKCHVTGT--APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 73
Query: 778 GQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPED-CGQYS 836
GQY+C A N G+ SA + VQ + P+ FI E S + +D +Y
Sbjct: 74 GQYTCYASNVAGKDSCSAQLGVQ---------EPPR----FIKKLEPSRIVKQDEHTRYE 120
Query: 837 CRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIA 896
C+ S +KV + + K ++ +A LE Y ED + D
Sbjct: 121 CKIGG-------SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED-SGDYTC 172
Query: 897 ELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG 956
E + + P F P + + H EC L T P V W +
Sbjct: 173 EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGT--PPFQVSWHKDK 230
Query: 957 KALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKG 1010
+ L +G + K +++ + I +V D G Y CKA+N G T +T+K
Sbjct: 231 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 1738 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNL 1797
G + PP F S + +G+ F ++ T P+ + W K+ ++I P YK +N
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 1798 FTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
TL +++ D+G Y C A N AG+ C A+L VQ
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 112/300 (37%), Gaps = 67/300 (22%)
Query: 9 LKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCTLK 68
+KI W K+ + G + T TL++ + D+ YTC A+N+ G+ + L
Sbjct: 35 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 94
Query: 69 IEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKENENVHF 128
++ E P+ ++K EP + K++E+ +
Sbjct: 95 VQ---------------------EPPRFIKKLEPSRIV--------------KQDEHTRY 119
Query: 129 DCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIA 188
+C++ S PE+KV W+ + I ++ +M V+++
Sbjct: 120 ECKIGGS-------------------PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMY 160
Query: 189 YVQSHDSGEYVCQWFVNNKPLPAGAKFKT------------THDFGYVALDIELMLKTLV 236
+ DSG+Y C+ + K + +E L+
Sbjct: 161 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP 220
Query: 237 PF-TEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
PF W + + L +G K+K + ++ I+ + D G Y KA+N GS T G++
Sbjct: 221 PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 47/213 (22%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995
+EC++ P + V W+ + + S+ + +LE+ ++ + DSG YTC+A N
Sbjct: 119 YECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
G A++S L VK EP V +RK KP+P
Sbjct: 177 AAGSASSSTSLKVK-------EPPV------------------FRK--------KPHP-- 201
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLD 1115
++ + VH +C L+ P ++ W + R +G + K + + S+
Sbjct: 202 --------VETLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 251
Query: 1116 MDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148
+ V + D GEY C+A+N G+ + KA
Sbjct: 252 ILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 106/284 (37%), Gaps = 40/284 (14%)
Query: 408 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 467
PP F S++ L G+S F+C +T +K+ W + + I KM
Sbjct: 5 PPFFDLKPVSVD-LALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 468 VMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQ----IRLPSPSQDNLDVPEAGKVH 523
+ + V D+G+Y C A N + I+ PS+ V +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI---VKQDEHTR 118
Query: 524 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATN 583
++C++ P +++ W+ + S+ + + L+M + DSG+Y C A N
Sbjct: 119 YECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 584 KWGTAMTKAKVICKVLTVI----------------------------VEWFYNGKKLPHG 615
G+A + + K V V W + ++L G
Sbjct: 177 AAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG 236
Query: 616 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+Y+ + + + IL + G Y+C+A+N GS S+
Sbjct: 237 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 55/197 (27%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVST 64
P +K+ W+K+ + S+ R +F + L + +L +DS YTC+A N G A S+
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 65 CTLKIEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKENE 124
+LK++ EP PVF + VE +
Sbjct: 185 TSLKVK------------------------------EP------PVFRKKPHPVETLKGA 208
Query: 125 NVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 184
+VH +C ++ + P +V W + + + + K++S+
Sbjct: 209 DVHLECELQGT-------------------PPFQVSWHKDKRELRSGKKYKIMSENFLTS 249
Query: 185 MDIAYVQSHDSGEYVCQ 201
+ I V S D GEY C+
Sbjct: 250 IHILNVDSADIGEYQCK 266
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 46/217 (21%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVIL 976
P F P + LA F+C +T T + + W + + + G K L
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGT--APIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEE 1036
+ V D+G YTC A+N G+ + S +L V+
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ--------------------------- 96
Query: 1037 ALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRP 1096
PP F +L+ + V + ++C++ P +++ W+ +
Sbjct: 97 ---------------EPPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETE 139
Query: 1097 FATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATN 1133
S+ + + L+M + DSG+Y C A N
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 122/345 (35%), Gaps = 99/345 (28%)
Query: 550 GSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKVLTVIVEWFYNG 609
G+ +D +S+D+ +SG + C T GTA K + W +
Sbjct: 1 GAMAPPFFDLKPVSVDLAL---GESGTFKCHVT---GTAPIK-----------ITWAKDN 43
Query: 610 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669
+++ G Y+ L +L + ++G Y C A+N G D A L
Sbjct: 44 REIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV-------- 95
Query: 670 ESQLPEGMEGGLEKIQTLEDAAHLRRTETADIEHRQAPVFTVPLSNIDDLREGENAHFEA 729
++ P F L +++ E+ +E
Sbjct: 96 ----------------------------------QEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 730 RLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYG 789
++ + P++KV W+ + ++ S+FR +LE+ + ED G Y+C A+N G
Sbjct: 122 KIGGS--PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 790 EAVTSASMKVQ---------------GKRSIILESQLPKGMEVFISFHE----------- 823
A +S S+KV+ + LE +L +S+H+
Sbjct: 180 SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY 239
Query: 824 ------------ISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQG 856
I V D G+Y C+A ND G S+ ++
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 1422 KQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFG 1481
++PPRF+ +++ + + + T++EC++ G P +KV W+ + + ++F +
Sbjct: 96 QEPPRFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVES 153
Query: 1482 YVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKP 1521
+ + EDSG+Y C A N G + LK P
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP 193
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/324 (18%), Positives = 110/324 (33%), Gaps = 62/324 (19%)
Query: 1424 PPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYV 1483
PP F + + D L +S F+C + G +K+ W + + + +
Sbjct: 5 PPFFDLKPVSVD-LALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 1484 AMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREME 1543
+ V D+G+Y C A+N+ G D A L
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV-------------------------- 95
Query: 1544 ASWQHTPEQLVEDEKPKEAPVFVSQPEAQK-VQEGEPARFCTRVTGYPRPRVMWLINGHT 1602
+E P F+ + E + V++ E R+ ++ G P +V+W +
Sbjct: 96 ----------------QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE 139
Query: 1603 IVNEIVRKITATETTEM----------------EHKGKIQERVVDASEKPAKPPVFTKKI 1646
I +++ E+ + E S K +PPVF KK
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKP 199
Query: 1647 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMED 1706
P + E E G P + W ++ + S ++I + + + + + V D
Sbjct: 200 HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSAD 259
Query: 1707 SGVFAVIAENRGGKAKCSANLVVE 1730
G + A N G C ++ ++
Sbjct: 260 IGEYQCKASNDVGSYTCVGSITLK 283
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 241 WFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLE- 299
W+ + + +KF+ + L++ EDSG YT +A N+ GSA++S +LK E
Sbjct: 133 WYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP 192
Query: 300 RLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 359
+F +P+ +L+ G H E L G V + + + + + + +
Sbjct: 193 PVFRKKPHPVETLK---------GADVHLECEL--QGTPPFQVSWHKDKRELRSGKKYKI 241
Query: 360 VHAFGMVVLEILGTKIEDTGVYTCRATNKWG 390
+ + + IL D G Y C+A+N G
Sbjct: 242 MSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGE- 60
E + P ++ W K+ L G + + + L ++ I ++ + D Y CKA+N +G
Sbjct: 215 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY 274
Query: 61 -AVSTCTLK 68
V + TLK
Sbjct: 275 TCVGSITLK 283
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 80/236 (33%), Gaps = 68/236 (28%)
Query: 1280 EPVRFETRVEP----RVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFD 1335
EP RF ++EP + D R EC I S + + I F
Sbjct: 97 EPPRFIKKLEPSRIVKQDEHTRYECK---------IGGSPEIKVLWYKDETEIQESSKFR 147
Query: 1336 LGFVS----LDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLK 1391
+ FV L++ + ED G+Y C A+N G A + ++ K+ P
Sbjct: 148 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF------------ 195
Query: 1392 TEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAP 1451
++ P V +K D EC+L
Sbjct: 196 ------------------------------RKKPHPVETLKGAD-------VHLECELQ- 217
Query: 1452 VGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYG 1507
G P +V W + + L ++ + + +++ V D GEY C+A+N G
Sbjct: 218 -GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 27/289 (9%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI-----VNEIVRKITATETT 1617
P F +P + + GE F VTG ++ W + I + + TAT T
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 1618 EMEHKGKIQERVVDASEKPAK-----------PPVFTKKIQPCRAFEQDQ-ARFEVEFDG 1665
KG + AS K PP F KK++P R +QD+ R+E + G
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 1666 DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA 1725
P + W++++ I S F++ + ++L M + +EDSG + A N G A S
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 1726 NLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIP 1785
+L V+E PP F G + ++ T P V W K+ +++
Sbjct: 186 SLKVKE----------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235
Query: 1786 DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
+YK + E+ L ++ I+ D G Y+C A N+ G C + +++
Sbjct: 236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 12/280 (4%)
Query: 308 PLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 367
P F L+ + +L+ GE F+ + G + + + + + I +
Sbjct: 6 PFFDLKPVSV-DLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 368 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 427
L +L D G YTC A+N G+ S L PP+F ++ +K +
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQL-----GVQAPPRFIKKLEPSRIVKQDEHT 117
Query: 428 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW 487
+EC + PE+KV W+ + I ++ +M V+++ + DSG+Y C A
Sbjct: 118 RYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 175
Query: 488 NNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPF 547
N + + ++ + VH +C L+ P ++ W + R
Sbjct: 176 NAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ--GTPPFQVSWHKDKREL 233
Query: 548 ATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT 587
+G + K + + S+ + V + D GEY C+A+N G+
Sbjct: 234 RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 17/249 (6%)
Query: 241 WFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLER 300
W +N+ + G +K T L ++ D+G YT A+N G + S L
Sbjct: 39 WAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV--- 95
Query: 301 LFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 360
P F + + + + E +E + G + V + + I+ S + R
Sbjct: 96 ----QAPPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKFRMS 149
Query: 361 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEG 420
+ VLE+ +ED+G YTC A N G A S +L+ +PP F +E
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-----KEPPVFRKKPHPVET 204
Query: 421 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSG 480
LK D H EC L P +V W + + + + K++S+ + I V S D G
Sbjct: 205 LKGAD-VHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 261
Query: 481 EYVCRAWNN 489
EY C+A N+
Sbjct: 262 EYQCKASND 270
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 1738 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNL 1797
G + PP F S + +G+ F ++ T P+ + W K+ ++I P YK +N
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 1798 FTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
TL +++ D+G Y C A N AG+ C A+L VQ+
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA 97
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 114/294 (38%), Gaps = 26/294 (8%)
Query: 718 DLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDC 777
DL GE+ F+ +T T +K+ W + + ++ G ++ L + V D
Sbjct: 16 DLALGESGTFKCHVTGT--APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 73
Query: 778 GQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPED-CGQYS 836
GQY+C A N G+ SA + VQ P+ FI E S + +D +Y
Sbjct: 74 GQYTCYASNVAGKDSCSAQLGVQAP---------PR----FIKKLEPSRIVKQDEHTRYE 120
Query: 837 CRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIA 896
C+ S +KV + + K ++ +A LE Y ED + D
Sbjct: 121 CKIGG-------SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED-SGDYTC 172
Query: 897 ELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG 956
E + + P F P + + H EC L T P V W +
Sbjct: 173 EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGT--PPFQVSWHKDK 230
Query: 957 KALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKG 1010
+ L +G + K +++ + I +V D G Y CKA+N G T +T+K
Sbjct: 231 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 111/300 (37%), Gaps = 67/300 (22%)
Query: 9 LKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCTLK 68
+KI W K+ + G + T TL++ + D+ YTC A+N+ G+ + L
Sbjct: 35 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 94
Query: 69 IEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKENENVHF 128
++ P+ ++K EP + K++E+ +
Sbjct: 95 VQ---------------------APPRFIKKLEPSRIV--------------KQDEHTRY 119
Query: 129 DCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIA 188
+C++ S PE+KV W+ + I ++ +M V+++
Sbjct: 120 ECKIGGS-------------------PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMY 160
Query: 189 YVQSHDSGEYVCQWFVNNKPLPAGAKFKT------------THDFGYVALDIELMLKTLV 236
+ DSG+Y C+ + K + +E L+
Sbjct: 161 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP 220
Query: 237 PF-TEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
PF W + + L +G K+K + ++ I+ + D G Y KA+N GS T G++
Sbjct: 221 PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 47/213 (22%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995
+EC++ P + V W+ + + S+ + +LE+ ++ + DSG YTC+A N
Sbjct: 119 YECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
G A++S L VK EP V +RK KP+P
Sbjct: 177 AAGSASSSTSLKVK-------EPPV------------------FRK--------KPHP-- 201
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLD 1115
++ + VH +C L+ P ++ W + R +G + K + + S+
Sbjct: 202 --------VETLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 251
Query: 1116 MDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148
+ V + D GEY C+A+N G+ + KA
Sbjct: 252 ILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 103/277 (37%), Gaps = 40/277 (14%)
Query: 408 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 467
PP F S++ L G+S F+C +T +K+ W + + I KM
Sbjct: 5 PPFFDLKPVSVD-LALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 468 VMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQ----IRLPSPSQDNLDVPEAGKVH 523
+ + V D+G+Y C A N I+ PS+ V +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRI---VKQDEHTR 118
Query: 524 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATN 583
++C++ P +++ W+ + S+ + + L+M + DSG+Y C A N
Sbjct: 119 YECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 584 KWGTAMTKAKVICKVLTVI----------------------------VEWFYNGKKLPHG 615
G+A + + K V V W + ++L G
Sbjct: 177 AAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG 236
Query: 616 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
+Y+ + + + IL + G Y+C+A+N GS
Sbjct: 237 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 55/197 (27%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVST 64
P +K+ W+K+ + S+ R +F + L + +L +DS YTC+A N G A S+
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 65 CTLKIEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKENE 124
+LK++ EP PVF + VE +
Sbjct: 185 TSLKVK------------------------------EP------PVFRKKPHPVETLKGA 208
Query: 125 NVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 184
+VH +C ++ + P +V W + + + + K++S+
Sbjct: 209 DVHLECELQGT-------------------PPFQVSWHKDKRELRSGKKYKIMSENFLTS 249
Query: 185 MDIAYVQSHDSGEYVCQ 201
+ I V S D GEY C+
Sbjct: 250 IHILNVDSADIGEYQCK 266
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 46/217 (21%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVIL 976
P F P + LA F+C +T T + + W + + + G K L
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGT--APIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEE 1036
+ V D+G YTC A+N G+ + S +L V+
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA-------------------------- 97
Query: 1037 ALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRP 1096
PP F +L+ + V + ++C++ P +++ W+ +
Sbjct: 98 ----------------PPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETE 139
Query: 1097 FATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATN 1133
S+ + + L+M + DSG+Y C A N
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/345 (20%), Positives = 122/345 (35%), Gaps = 99/345 (28%)
Query: 550 GSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKVLTVIVEWFYNG 609
G+ +D +S+D+ +SG + C T GTA K + W +
Sbjct: 1 GAMAPPFFDLKPVSVDLAL---GESGTFKCHVT---GTAPIK-----------ITWAKDN 43
Query: 610 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669
+++ G Y+ L +L + ++G Y C A+N G D A L
Sbjct: 44 REIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV-------- 95
Query: 670 ESQLPEGMEGGLEKIQTLEDAAHLRRTETADIEHRQAPVFTVPLSNIDDLREGENAHFEA 729
Q P P F L +++ E+ +E
Sbjct: 96 --QAP--------------------------------PRFIKKLEPSRIVKQDEHTRYEC 121
Query: 730 RLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYG 789
++ + P++KV W+ + ++ S+FR +LE+ + ED G Y+C A+N G
Sbjct: 122 KIGGS--PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 790 EAVTSASMKVQ---------------GKRSIILESQLPKGMEVFISFHE----------- 823
A +S S+KV+ + LE +L +S+H+
Sbjct: 180 SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY 239
Query: 824 ------------ISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQG 856
I V D G+Y C+A ND G S+ ++
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 1422 KQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFG 1481
+ PPRF+ +++ + + + T++EC++ G P +KV W+ + + ++F +
Sbjct: 96 QAPPRFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVES 153
Query: 1482 YVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKP 1521
+ + EDSG+Y C A N G + LK P
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP 193
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/323 (18%), Positives = 110/323 (34%), Gaps = 60/323 (18%)
Query: 1424 PPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYV 1483
PP F + + D L +S F+C + G +K+ W + + + +
Sbjct: 5 PPFFDLKPVSVD-LALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 1484 AMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREME 1543
+ V D+G+Y C A+N+ G D A L P I+++E
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRF---------------IKKLE 106
Query: 1544 ASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
S + V++ E R+ ++ G P +V+W + I
Sbjct: 107 PS--------------------------RIVKQDEHTRYECKIGGSPEIKVLWYKDETEI 140
Query: 1604 VNEIVRKITATETTEM----------------EHKGKIQERVVDASEKPAKPPVFTKKIQ 1647
+++ E+ + E S K +PPVF KK
Sbjct: 141 QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPH 200
Query: 1648 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDS 1707
P + E E G P + W ++ + S ++I + + + + + V D
Sbjct: 201 PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADI 260
Query: 1708 GVFAVIAENRGGKAKCSANLVVE 1730
G + A N G C ++ ++
Sbjct: 261 GEYQCKASNDVGSYTCVGSITLK 283
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 241 WFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLE- 299
W+ + + +KF+ + L++ EDSG YT +A N+ GSA++S +LK E
Sbjct: 133 WYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP 192
Query: 300 RLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 359
+F +P+ +L+ G H E L G V + + + + + + +
Sbjct: 193 PVFRKKPHPVETLK---------GADVHLECEL--QGTPPFQVSWHKDKRELRSGKKYKI 241
Query: 360 VHAFGMVVLEILGTKIEDTGVYTCRATNKWG 390
+ + + IL D G Y C+A+N G
Sbjct: 242 MSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGE- 60
E + P ++ W K+ L G + + + L ++ I ++ + D Y CKA+N +G
Sbjct: 215 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY 274
Query: 61 -AVSTCTLK 68
V + TLK
Sbjct: 275 TCVGSITLK 283
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 1651 AFEQDQARFEVEFDGDPLPTIKWFREDFPI-----TSSPDFQIHTFSTKSILIMRQVFME 1705
A Q E G+P+P IKW + D + T+ P QI + S E
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSVS-----------FE 266
Query: 1706 DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAK 1765
D G + AEN G+ ++V+ + P +L IS ++G R+
Sbjct: 267 DEGTYECEAENSKGRDTVQGRIIVQAQ----------PEWLKVISDTEADIGSNLRWGCA 316
Query: 1766 ISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEAR 1825
+ V WL+NG+ + R + L D F+ L +E DSG Y+CVA N G
Sbjct: 317 AAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLE----DSGMYQCVAENKHGTIY 372
Query: 1826 CEAELVVQS 1834
AEL VQ+
Sbjct: 373 ASAELAVQA 381
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 66/174 (37%), Gaps = 51/174 (29%)
Query: 976 LEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLE 1035
L+I V D G Y C+A N G + TV+GR + +P+ + ++ +I
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKG------RDTVQGRIIVQAQPEWLKVISDTEADI---- 307
Query: 1036 EALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGR 1095
+ + C K PT+R W NG
Sbjct: 308 ---------------------------------GSNLRWGCAAAGKPRPTVR--WLRNGE 332
Query: 1096 PFATGSRVKTVY-DFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148
P A+ +RV+ + D F L ++ DSG Y C A NK GT A++ +A
Sbjct: 333 PLASQNRVEVLAGDLRFSKLSLE-----DSGMYQCVAENKHGTIYASAELAVQA 381
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVIL 976
PE+L +D + + C P TV W NG+ L++ +R++ + L
Sbjct: 294 PEWLKVISDTEADIGSNLRWGC--AAAGKPRPTVRWLRNGEPLASQNRVEVLAG----DL 347
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTVKG 1010
+ + L DSG+Y C A NKHG S +L V+
Sbjct: 348 RFSKLSLEDSGMYQCVAENKHGTIYASAELAVQA 381
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 97/264 (36%), Gaps = 48/264 (18%)
Query: 241 WFVNNKP--LPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCL 298
W +N P +P + + G L I A D G Y+ AT+ +T S K
Sbjct: 135 WLLNEFPNFIPTDGRHFVSQTTG--NLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFA 192
Query: 299 ERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR 358
+ + LF+ + A F A + Q +T+E G P+ RI+
Sbjct: 193 QLNLAAEDTRLFAPSIK----------ARFPAETYALVGQQVTLECFAFGNPVP---RIK 239
Query: 359 TVHAFGMV---------VLEILGTKIEDTGVYTCRATNKWG----QAEISVNLECVDKSK 405
G + L+I ED G Y C A N G Q I V +
Sbjct: 240 WRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQ------ 293
Query: 406 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS-DF 464
P++ I E G + + C P V W NG+P+ +NRV++++ D
Sbjct: 294 ---PEWLKVISDTEA-DIGSNLRWGCAA--AGKPRPTVRWLRNGEPLASQNRVEVLAGDL 347
Query: 465 GFVVMDIAYVQSHDSGEYVCRAWN 488
F + + DSG Y C A N
Sbjct: 348 RFSKLSL-----EDSGMYQCVAEN 366
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 111/325 (34%), Gaps = 53/325 (16%)
Query: 373 TKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT 432
TK +D GVY C A+N G V+ E + + G +F+ + +G C
Sbjct: 68 TKAQDAGVYQCLASNPVGTV---VSREAILRF-GFLQEFSKEERDPVKAHEGWGVMLPCN 123
Query: 433 LTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNNXXX 492
P + P L W N P F + + IA + D G Y C A ++
Sbjct: 124 -PPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDF 182
Query: 493 XXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSR 552
Q+ L ++D + K F + ++ F G P R
Sbjct: 183 STKSVFSKFAQLNL--AAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPV---PR 237
Query: 553 VKTVYDFGFIS---------LDMDYVYARDSGEYICRATNKWGTAMTKAKVICKV----L 599
+K G +S L + V D G Y C A N G + ++I + L
Sbjct: 238 IKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWL 297
Query: 600 TVI------------------------VEWFYNGKKLPHGHRYRTFH-DFGIVILDILYC 634
VI V W NG+ L +R D L +
Sbjct: 298 KVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSL--- 354
Query: 635 YEENSGVYECRATNKYGSDVTKASL 659
E+SG+Y+C A NK+G+ A L
Sbjct: 355 --EDSGMYQCVAENKHGTIYASAEL 377
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 20/137 (14%)
Query: 265 LDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGE 324
L I ED G Y +A NSKG T G + + Q + L +S+ E
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRI-------------IVQAQPEWLKVISDTE 304
Query: 325 I---AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY 381
++ G TV +L NG+P+ + +R+ + L +ED+G+Y
Sbjct: 305 ADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAG----DLRFSKLSLEDSGMY 360
Query: 382 TCRATNKWGQAEISVNL 398
C A NK G S L
Sbjct: 361 QCVAENKHGTIYASAEL 377
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 1615 ETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWF 1674
E + + +Q R++ ++ P + K I A R+ G P PT++W
Sbjct: 274 EAENSKGRDTVQGRIIVQAQ-----PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWL 328
Query: 1675 REDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 1730
R P+ S ++ L ++ +EDSG++ +AEN+ G SA L V+
Sbjct: 329 RNGEPLASQNRVEV----LAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQ 380
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 92/252 (36%), Gaps = 50/252 (19%)
Query: 368 LEILGTKIEDTGVYTCRATNKWGQAEISV-------NLECVDKSKGQPPKFTSHIKSLEG 420
L I T D G Y+C AT+ + SV NL D F IK
Sbjct: 159 LYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRL-----FAPSIK---- 209
Query: 421 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV---------VMDI 471
A F + ++ +E F G P+ R+K G + + I
Sbjct: 210 ------ARFPAETYALVGQQVTLECFAFGNPV---PRIKWRKVDGSLSPQWTTAEPTLQI 260
Query: 472 AYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQ----IRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C A N+ +++ S ++ ++ + + C
Sbjct: 261 PSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADI----GSNLRWGCA 316
Query: 528 LEPKSDPTMRIDWFFNGRPFATGSRVKTVY-DFGFISLDMDYVYARDSGEYICRATNKWG 586
K PT+R W NG P A+ +RV+ + D F L ++ DSG Y C A NK G
Sbjct: 317 AAGKPRPTVR--WLRNGEPLASQNRVEVLAGDLRFSKLSLE-----DSGMYQCVAENKHG 369
Query: 587 TAMTKAKVICKV 598
T A++ +
Sbjct: 370 TIYASAELAVQA 381
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 62/166 (37%), Gaps = 51/166 (30%)
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEGMEGGLEKIQTLEDAAHLRRT 696
E+ G YEC A N G D + +I+++Q E ++ + D T
Sbjct: 266 EDEGTYECEAENSKGRDTVQG--------RIIVQAQP--------EWLKVISD------T 303
Query: 697 ETADIEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRF 756
E ADI +LR G A P+ V W NG+P+ + +R
Sbjct: 304 E-ADIG--------------SNLRWGCAA--------AGKPRPTVRWLRNGEPLASQNRV 340
Query: 757 RTFC-DFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQG 801
D F L + ED G Y C A N +G SA + VQ
Sbjct: 341 EVLAGDLRFSKLSL-----EDSGMYQCVAENKHGTIYASAELAVQA 381
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 1450 APVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYG 1507
A G P V W NG+PL +NR + + F + EDSG Y C A N +G
Sbjct: 316 AAAGKPRPTVRWLRNGEPLASQNRVEVLAG----DLRFSKLSLEDSGMYQCVAENKHG 369
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
RA P W NG + L R G + + +N +A D+ +Y C A+N +G VS
Sbjct: 31 RASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVI-MNPTKAQDAGVYQCLASNPVGTVVS 89
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 25/98 (25%)
Query: 104 LVFDSPVFISHLNDVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFH 163
+V P ++ ++D E N+ + C P V W
Sbjct: 289 IVQAQPEWLKVISDTEADIGSNLRWGCAA-------------------AGKPRPTVRWLR 329
Query: 164 NGKPIFHKNRVKMVS-DFGFVVMDIAYVQSHDSGEYVC 200
NG+P+ +NRV++++ D F + + DSG Y C
Sbjct: 330 NGEPLASQNRVEVLAGDLRFSKLSL-----EDSGMYQC 362
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCT 66
P + W +NG PL+ +R+ L + L +DS +Y C A N G ++
Sbjct: 321 PRPTVRWLRNGEPLASQNRVEVLAG----DLRFSKLSLEDSGMYQCVAENKHGTIYASAE 376
Query: 67 LKIE 70
L ++
Sbjct: 377 LAVQ 380
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 15/191 (7%)
Query: 1642 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ 1701
F ++ A E A E G P P+ W R + I + ++ S L++
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRS--KKYSLLGGSNLLISN 281
Query: 1702 VFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLAR 1761
V +DSG + + + SA L V +VPP FL S+
Sbjct: 282 VTDDDSGTYTCVVTYKNENISASAELTV----------LVPPWFLNHPSNLYAYESMDIE 331
Query: 1762 FDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNA 1821
F+ +S V W+KNG +IP ++ + NL L ++++ D G Y+CVA N A
Sbjct: 332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKS---DEGFYQCVAENEA 388
Query: 1822 GEARCEAELVV 1832
G A+ A+L+V
Sbjct: 389 GNAQSSAQLIV 399
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 131/358 (36%), Gaps = 73/358 (20%)
Query: 1393 EALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPV 1452
E L Q EA++ S I T + P RF++Q ++ + + +C++ +
Sbjct: 94 EGLYQCEASLGDSGSIISRTAKVMV----AGPLRFLSQTESITAFMG-DTVLLKCEV--I 146
Query: 1453 GDPNMKVEWFLNGK---PLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMD 1509
GDP + W N + P+P +R + A+ + P DSG Y C A N
Sbjct: 147 GDPMPTIHWQKNQQDLNPIPGDSR---VVVLPSGALQISRLQPGDSGVYRCSARN----- 198
Query: 1510 ETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQP 1569
S E E +++ D F+ +P
Sbjct: 199 -----------------------PASTRTGNEAEV-------RILSDPGLHRQLYFLQRP 228
Query: 1570 EAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIV-------------NEIVRKIT---- 1612
EG+ A V+GYP P WL G ++ N ++ +T
Sbjct: 229 SNVIAIEGKDAVLECCVSGYPPPSFTWL-RGEEVIQLRSKKYSLLGGSNLLISNVTDDDS 287
Query: 1613 ATETTEMEHKGKIQERVVDASEKPA-KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTI 1671
T T + +K E + ++E PP F A+E FE G P+PT+
Sbjct: 288 GTYTCVVTYK---NENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTV 344
Query: 1672 KWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 1729
W + + S FQI S IL V D G + +AEN G A+ SA L+V
Sbjct: 345 NWMKNGDVVIPSDYFQIVGGSNLRIL---GVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 95/246 (38%), Gaps = 54/246 (21%)
Query: 902 GHEREDRIEEDLG--KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKAL 959
G+E E RI D G + FL P+++ E A EC ++ PS T W + +
Sbjct: 205 GNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT--WLRGEEVI 262
Query: 960 SAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQ 1019
R K + G L I++V DSG YTC T K+ + S +LTV
Sbjct: 263 QL--RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTV----------- 309
Query: 1020 VSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLE 1079
L+ PP F + NL E+ + F+C +
Sbjct: 310 ------------------------LV-------PPWFLNH-PSNLYAYESMDIEFECAVS 337
Query: 1080 PKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAM 1139
K PT ++W NG + V G +L + V D G Y C A N+ G A
Sbjct: 338 GKPVPT--VNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVAENEAGNAQ 392
Query: 1140 TKAKVI 1145
+ A++I
Sbjct: 393 SSAQLI 398
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 7/197 (3%)
Query: 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP-DFQIHTFSTKS 1695
A P F + + AF D + E GDP+PTI W + + P D ++ + +
Sbjct: 119 AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA 178
Query: 1696 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 1755
+ I R + DSGV+ A N A E + G FL S+ +
Sbjct: 179 LQISR-LQPGDSGVYRCSARN---PASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI 234
Query: 1756 VGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYEC 1815
G+ A + +S P WL+ G+++I +R K LLI +DSG Y C
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLR-GEEVI-QLRSKKYSLLGGSNLLISNVTDDDSGTYTC 292
Query: 1816 VAMNNAGEARCEAELVV 1832
V AEL V
Sbjct: 293 VVTYKNENISASAELTV 309
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVIL 976
P FL P++L ES FEC ++ P TV W NG + + + G L
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVS--GKPVPTVNWMKNGDVVIPSDYFQIV---GGSNL 367
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
I V D G Y C A N+ G A +S +L V
Sbjct: 368 RILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 108/271 (39%), Gaps = 28/271 (10%)
Query: 335 VGDQTMTVEFLYNGK---PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN---- 387
+GD T+ + N + PI R+ + + L+I + D+GVY C A N
Sbjct: 146 IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---LQISRLQPGDSGVYRCSARNPAST 202
Query: 388 -KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWF 446
+AE+ + + + + S++ ++EG KD A EC ++ P W
Sbjct: 203 RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEG-KD---AVLECCVSGYPPPSFT--WL 256
Query: 447 HNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW--NNXXXXXXXXXXXXHQI 504
+ I + R K S G + I+ V DSG Y C N
Sbjct: 257 RGEEVI--QLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPW 314
Query: 505 RLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISL 564
L PS NL E+ + F+C + K PT ++W NG + V G +L
Sbjct: 315 FLNHPS--NLYAYESMDIEFECAVSGKPVPT--VNWMKNGDVVIPSDYFQIV---GGSNL 367
Query: 565 DMDYVYARDSGEYICRATNKWGTAMTKAKVI 595
+ V D G Y C A N+ G A + A++I
Sbjct: 368 RILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 51/139 (36%), Gaps = 13/139 (9%)
Query: 260 FGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSN 319
G L I +DSG YT T + + S L L P F H SN
Sbjct: 272 LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP-------PWF---LNHPSN 321
Query: 320 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 379
L E E G TV ++ NG + S + V G L ILG D G
Sbjct: 322 LYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEG 378
Query: 380 VYTCRATNKWGQAEISVNL 398
Y C A N+ G A+ S L
Sbjct: 379 FYQCVAENEAGNAQSSAQL 397
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 16/136 (11%)
Query: 173 RVKMVSDFGFVVMDIAYVQSHDSGEYVCQWFVNNKPLPAGAKFKT----------THDFG 222
R K S G + I+ V DSG Y C N+ + A A+ ++ +
Sbjct: 265 RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYA 324
Query: 223 YVALDIELMLKTL---VPFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYT 279
Y ++DIE VP W N + F+ G L I+G D G Y
Sbjct: 325 YESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQ 381
Query: 280 VKATNSKGSATTSGTL 295
A N G+A +S L
Sbjct: 382 CVAENEAGNAQSSAQL 397
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 1724
G+P+P IKW + D TS S++ +L ++ V ED G + AEN G+
Sbjct: 233 GNPVPQIKWRKLDGSQTS------KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286
Query: 1725 ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKII 1784
+++ + P +L I+ ++G R+ S V WL++G+ +
Sbjct: 287 GRIIIHAQ----------PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA 336
Query: 1785 PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
R + + F+ L V+EDSG Y+CVA N G AEL VQ+
Sbjct: 337 SQNRIEVSGGELRFSKL----VLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVIL 976
P++L TD + + C + P V W +G+ L++ +RI+ L
Sbjct: 295 PDWLDVITDTEADIGSDLRWSC--VASGKPRPAVRWLRDGQPLASQNRIEVSGG----EL 348
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTVKG 1010
+ + L DSG+Y C A NKHG S +LTV+
Sbjct: 349 RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 1658 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 1717
R+ G P P ++W R+ P+ S ++ + L ++ +EDSG++ +AEN+
Sbjct: 313 RWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENK 368
Query: 1718 GGKAKCSANLVVE 1730
G SA L V+
Sbjct: 369 HGTVYASAELTVQ 381
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 144/380 (37%), Gaps = 60/380 (15%)
Query: 241 WFVNNKPLPAGAKFKTTHDFGYVALDIV---GAYAEDSGIYTVKATNSKGSATTSGTLKC 297
W +N L G + + VA D+V A+D+G Y ATN++G+ +
Sbjct: 41 WKMNGTELKMGPDSR----YRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREA--S 94
Query: 298 LERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP--IEASH 355
L F+ FS + + ++EG F S P ++ +L N P I A
Sbjct: 95 LRFGFLQE----FSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADG 149
Query: 356 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV-------NLECVDKSKGQP 408
R G L I T+ D G Y+C AT+ SV +L D + P
Sbjct: 150 RRFVSQTTGN--LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAP 207
Query: 409 ---PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 465
KF + +L G EC +P +++W + + K +S
Sbjct: 208 SIKAKFPADTYAL----TGQMVTLECFA--FGNPVPQIKW----RKLDGSQTSKWLSSE- 256
Query: 466 FVVMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQ-DNLDV---PEA-- 519
++ I V D G Y C A N +Q R+ +Q D LDV EA
Sbjct: 257 -PLLHIQNVDFEDEGTYECEAEN-------IKGRDTYQGRIIIHAQPDWLDVITDTEADI 308
Query: 520 -GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYI 578
+ + C K P +R W +G+P A+ +R++ L + DSG Y
Sbjct: 309 GSDLRWSCVASGKPRPAVR--WLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQ 362
Query: 579 CRATNKWGTAMTKAKVICKV 598
C A NK GT A++ +
Sbjct: 363 CVAENKHGTVYASAELTVQA 382
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
RA+P W NG L +G R G + +S N ++A D+ Y C ATN G VS
Sbjct: 32 RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVIS-NPVKAKDAGSYQCVATNARGTVVS 90
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 60/174 (34%), Gaps = 49/174 (28%)
Query: 975 ILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKL 1034
+L I +V D G Y C+A N G + T +GR I +P + + +I
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKG------RDTYQGRIIIHAQPDWLDVITDTEADI--- 308
Query: 1035 EEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG 1094
+ + C K P +R W +G
Sbjct: 309 ----------------------------------GSDLRWSCVASGKPRPAVR--WLRDG 332
Query: 1095 RPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148
+P A+ +R++ L + DSG Y C A NK GT A++ +A
Sbjct: 333 QPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 1054 PVFTSQLQDNLDVPEAG---KVHFDCRLEPKSDPTMRIDWFFNGRPFATG--SRVKTVYD 1108
PVF Q L PE KV CR +++P W NG G SR + V
Sbjct: 5 PVFEEQPAHTL-FPEGSAEEKVTLTCRA--RANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 1109 FGFISLDMDYVYARDSGEYICRATNKWGTAMTK 1141
IS + V A+D+G Y C ATN GT +++
Sbjct: 62 DLVIS---NPVKAKDAGSYQCVATNARGTVVSR 91
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 737 PKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSAS 796
P+ V W +G+P+ + +R + L S + ED G Y C A N +G SA
Sbjct: 322 PRPAVRWLRDGQPLASQNRI----EVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAE 377
Query: 797 MKVQG 801
+ VQ
Sbjct: 378 LTVQA 382
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 1453 GDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYG 1507
G P V W +G+PL +NR + + F + EDSG Y C A N +G
Sbjct: 320 GKPRPAVRWLRDGQPLASQNRI----EVSGGELRFSKLVLEDSGMYQCVAENKHG 370
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 1765 KISATKPLDVYWLKNGK--KIIPDIRYKTLEEDNLFTLLIIEAV-VEDSGAYECVAMNNA 1821
+ A P W NG K+ PD RY+ + D L+I V +D+G+Y+CVA N
Sbjct: 30 RARANPPATYRWKMNGTELKMGPDSRYRLVAGD----LVISNPVKAKDAGSYQCVATNAR 85
Query: 1822 G 1822
G
Sbjct: 86 G 86
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 521 KVHFDCRLEPKSDPTMRIDWFFNGRPFATG--SRVKTVYDFGFISLDMDYVYARDSGEYI 578
KV CR +++P W NG G SR + V IS + V A+D+G Y
Sbjct: 24 KVTLTCRA--RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVIS---NPVKAKDAGSYQ 78
Query: 579 CRATNKWGTAMTK 591
C ATN GT +++
Sbjct: 79 CVATNARGTVVSR 91
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 71/199 (35%), Gaps = 63/199 (31%)
Query: 945 DPSMTVEWFHNGKALSAG--SRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATT 1002
+P T W NG L G SR + + G +++ N V +D+G Y C ATN G
Sbjct: 34 NPPATYRWKMNGTELKMGPDSRYRLVA--GDLVIS-NPVKAKDAGSYQCVATNARG---- 86
Query: 1003 SCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQD 1062
TV R+ A+ L+E F+++ +D
Sbjct: 87 ----TVVSRE--------------ASLRFGFLQE-------------------FSAEERD 109
Query: 1063 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPF---ATGSRVKTVYDFGFISLDMDYV 1119
+ + E V F C P P + W N P A G R F+S +
Sbjct: 110 PVKITEGWGVMFTCSPPPHY-PALSYRWLLNEFPNFIPADGRR--------FVSQTTGNL 160
Query: 1120 Y-----ARDSGEYICRATN 1133
Y A D G Y C AT+
Sbjct: 161 YIAKTEASDLGNYSCFATS 179
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCT 66
P + W ++G PL+ +RI + L + L +DS +Y C A N G ++
Sbjct: 322 PRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYASAE 377
Query: 67 LKIE 70
L ++
Sbjct: 378 LTVQ 381
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 66.2 bits (160), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 913 LGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFG 972
+ P +T D T++ ++A F + T +P T W +GKA++ G + K D G
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVK--ATGEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 973 FVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKG 1010
LEI+ DSGLYTC N G ++SCKLT+K
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 41/92 (44%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLI 1802
P +T + ++ +A+F K + W K+GK I +YK E+ F L I
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 1803 IEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
+ DSG Y C N+AG +L +++
Sbjct: 67 HKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 40.0 bits (92), Expect = 0.011, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 1 VEPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGE 60
V+ +P W K+G ++ G + + + D G L I+ DS +YTC N G
Sbjct: 28 VKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87
Query: 61 AVSTCTLKIE 70
S+C L I+
Sbjct: 88 VSSSCKLTIK 97
Score = 39.3 bits (90), Expect = 0.022, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
P W + K + G K+K + D G L+I DSG+YT NS GS ++S L
Sbjct: 36 PTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 38.1 bits (87), Expect = 0.046, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 37/91 (40%)
Query: 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 1699
PV +Q A+F V+ G+P PT W ++ IT +++ L +
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 1700 RQVFMEDSGVFAVIAENRGGKAKCSANLVVE 1730
+ DSG++ +N G S L ++
Sbjct: 67 HKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 734 TDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVT 793
T +P+ W +GK + G +++ D G LEI D G Y+C N G +
Sbjct: 31 TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90
Query: 794 SASMKVQG 801
S + ++
Sbjct: 91 SCKLTIKA 98
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFIS 1113
PV + LQD V F + + PT W +G+ G + K D G
Sbjct: 7 PVIVTGLQDT-TVSSDSVAKFAVKATGEPRPTAI--WTKDGKAITQGGKYKLSEDKGGFF 63
Query: 1114 LDMDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148
L++ DSG Y C N G+ + K+ KA
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 605 WFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
W +GK + G +Y+ D G L+I +SG+Y C N GS
Sbjct: 40 WTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
PV V+ + V A+F + TG PRP +W +G I
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI 47
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 318 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 377
+ +S +A F ++ G+ T + +GK I + + G LEI T D
Sbjct: 16 TTVSSDSVAKF--AVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSD 73
Query: 378 TGVYTCRATNKWGQAEISVNL 398
+G+YTC N G S L
Sbjct: 74 SGLYTCTVKNSAGSVSSSCKL 94
Score = 30.8 bits (68), Expect = 8.4, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 540 WFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKVL 599
W +G+ G + K D G L++ DSG Y C N G+ + K+ K +
Sbjct: 40 WTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 30.4 bits (67), Expect = 9.7, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 438 DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNN 489
+P W +GK I + K+ D G ++I + DSG Y C N+
Sbjct: 33 EPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS 84
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 1632 ASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI-HT 1690
A EKP P FTK I E ARF+ + +G P P + WF++D P+ S FQI +
Sbjct: 34 AEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 93
Query: 1691 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 1730
L + +V +D + A N G+A C+A L+VE
Sbjct: 94 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKT-LEEDNLFT 1799
V P F TI + G ARFD K+ +V W K+ + ++ +E+ +
Sbjct: 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 1800 LLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
L I E +D Y C A+N+ GEA C AEL+V++
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 1008 VKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPN-PPVFTSQLQDNLDV 1066
+ GR+ P S I AN +N E + EEKP+ P FT + D ++V
Sbjct: 4 MSGRKASGSSP-TSPINANKVENEDAFLEEVA--------EEKPHVKPYFTKTILD-MEV 53
Query: 1067 PEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYD-FGFISLDMDYVYARDSG 1125
E FDC++E DP + WF + P + YD G SL + V D
Sbjct: 54 VEGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 111
Query: 1126 EYICRATNKWGTAMTKAKVI 1145
+Y C+A N G A A+++
Sbjct: 112 KYTCKAVNSLGEATCTAELL 131
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 906 EDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRI 965
E+ EE P F T D+ + E + A F+C++ DP V WF + +
Sbjct: 31 EEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRHF 88
Query: 966 KT-INDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
+ ++ G L I++V D YTCKA N GEAT + +L V+
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDF-GLVTLSINSLRADDSAIYTCKATNLLGEAVSTC 65
P+ ++ WFK+ P+ + +D G +L+I+ + DD A YTCKA N LGEA T
Sbjct: 69 PDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128
Query: 66 TLKIE 70
L +E
Sbjct: 129 ELLVE 133
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 697 ETADIEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRF 756
E A+ + P FT + +++ + EG A F+ ++ DP+ V WF + P+K F
Sbjct: 32 EVAEEKPHVKPYFTKTILDME-VVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRHF 88
Query: 757 RT-FCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQ 800
+ + + G L IS V +D +Y+C+A N GEA +A + V+
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 513 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYD-FGFISLDMDYVYA 571
+++V E FDC++E DP + WF + P + YD G SL + V
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG 107
Query: 572 RDSGEYICRATNKWGTAMTKAKVICKVL 599
D +Y C+A N G A A+++ + +
Sbjct: 108 DDDAKYTCKAVNSLGEATCTAELLVETM 135
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 1420 EKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYD 1479
EK + T+ ++VE + +F+C++ G P+ +V WF + P+ F YD
Sbjct: 36 EKPHVKPYFTKTILDMEVVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDYD 93
Query: 1480 -FGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRA--ILKTTGK 1520
G ++ V +D +Y C+A N G A +++T GK
Sbjct: 94 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 1554 VEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
V +EKP P F +V EG ARF +V GYP P VMW + + +
Sbjct: 33 VAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV 82
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 409 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD-FGFV 467
P FT I +E + +G +A F+C + DPE V WF + P+ ++ D G
Sbjct: 42 PYFTKTILDME-VVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRHFQIDYDEEGNC 98
Query: 468 VMDIAYVQSHDSGEYVCRAWNN 489
+ I+ V D +Y C+A N+
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNS 120
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 38/142 (26%)
Query: 95 KEVRKDEPELVFDSPVFISHLNDVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVND 154
+EV +++P + P F + D+E E FDC+VE
Sbjct: 31 EEVAEEKPHV---KPYFTKTILDMEVVEGSAARFDCKVE-------------------GY 68
Query: 155 PELKVEWFHNGKPIFHKNRVKMVSD-FGFVVMDIAYVQSHDSGEYVCQWFVNNKPLPAGA 213
P+ +V WF + P+ ++ D G + I+ V D +Y C
Sbjct: 69 PDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC------------- 115
Query: 214 KFKTTHDFGYVALDIELMLKTL 235
K + G EL+++T+
Sbjct: 116 --KAVNSLGEATCTAELLVETM 135
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 1632 ASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI-HT 1690
A EKP P FTK I E ARF+ + +G P P + WF++D P+ S FQI +
Sbjct: 34 AEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 93
Query: 1691 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 1730
L + +V +D + A N G+A C+A L+VE
Sbjct: 94 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKT-LEEDNLFT 1799
V P F TI + G ARFD K+ +V W K+ + ++ +E+ +
Sbjct: 40 VKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 1800 LLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
L I E +D Y C A+N+ GEA C AEL+V++
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 1008 VKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPN-PPVFTSQLQDNLDV 1066
+ GR+ P S I AN +N E + EEKP+ P FT + D +DV
Sbjct: 4 MSGRKASGSSP-TSPINANKVENEDAFLEEVA--------EEKPHVKPYFTKTILD-MDV 53
Query: 1067 PEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYD-FGFISLDMDYVYARDSG 1125
E FDC++E DP + WF + P + YD G SL + V D
Sbjct: 54 VEGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 111
Query: 1126 EYICRATNKWGTAMTKAKVI 1145
+Y C+A N G A A+++
Sbjct: 112 KYTCKAVNSLGEATCTAELL 131
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 697 ETADIEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRF 756
E A+ + P FT + ++D + EG A F+ ++ DP+ V WF + P+K F
Sbjct: 32 EVAEEKPHVKPYFTKTILDMD-VVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRHF 88
Query: 757 RT-FCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQ 800
+ + + G L IS V +D +Y+C+A N GEA +A + V+
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDF-GLVTLSINSLRADDSAIYTCKATNLLGEAVSTC 65
P+ ++ WFK+ P+ + +D G +L+I+ + DD A YTCKA N LGEA T
Sbjct: 69 PDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128
Query: 66 TLKIE 70
L +E
Sbjct: 129 ELLVE 133
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 906 EDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRI 965
E+ EE P F T D+ + E + A F+C++ DP V WF + +
Sbjct: 31 EEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRHF 88
Query: 966 KT-INDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
+ ++ G L I++V D YTCKA N GEAT + +L V+
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 513 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYD-FGFISLDMDYVYA 571
++DV E FDC++E DP + WF + P + YD G SL + V
Sbjct: 50 DMDVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG 107
Query: 572 RDSGEYICRATNKWGTAMTKAKVICKVL 599
D +Y C+A N G A A+++ + +
Sbjct: 108 DDDAKYTCKAVNSLGEATCTAELLVETM 135
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 1425 PRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYD-FGYV 1483
P F I D +VE + +F+C++ G P+ +V WF + P+ F YD G
Sbjct: 42 PYFTKTILDMD-VVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC 98
Query: 1484 AMNFGWVYPEDSGEYLCRATNLYGMDETRA--ILKTTGK 1520
++ V +D +Y C+A N G A +++T GK
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 1554 VEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
V +EKP P F V EG ARF +V GYP P VMW + + +
Sbjct: 33 VAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPV 82
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 409 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD-FGFV 467
P FT I ++ + +G +A F+C + DPE V WF + P+ ++ D G
Sbjct: 42 PYFTKTILDMD-VVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKESRHFQIDYDEEGNC 98
Query: 468 VMDIAYVQSHDSGEYVCRAWNN 489
+ I+ V D +Y C+A N+
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNS 120
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin
Length = 110
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLI 1802
P FL + G+L R D K+S D+ W +GK + PD +K L +N LI
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 1803 IEAVV-EDSGAYECVAMNNAGEARCEAELVVQS 1834
IE V D+G Y C+A N AG+ ELVV +
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102
Score = 58.2 bits (139), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKT-INDFG 972
G P FL P DLT+ E L +C+++ P ++ W +GK + S K + + G
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLS--WQLDGKPVRPDSAHKMLVRENG 64
Query: 973 FVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQ 1012
L I V RD+G+YTC ATN+ G+ + S +L V ++
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 1059 QLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKT-VYDFGFISLDMD 1117
Q +L V E DC++ PT + W +G+P S K V + G SL ++
Sbjct: 14 QAPGDLTVQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIE 71
Query: 1118 YVYARDSGEYICRATNKWGTAMTKAKVICKAK 1149
V +RD+G Y C ATN+ G +++ AK
Sbjct: 72 PVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 39.3 bits (90), Expect = 0.021, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 513 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKT-VYDFGFISLDMDYVYA 571
+L V E DC++ PT + W +G+P S K V + G SL ++ V +
Sbjct: 18 DLTVQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS 75
Query: 572 RDSGEYICRATNKWG 586
RD+G Y C ATN+ G
Sbjct: 76 RDAGIYTCIATNRAG 90
Score = 38.5 bits (88), Expect = 0.037, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 1658 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS----ILIMRQVFMEDSGVFAVI 1713
R + + G P P + W + P+ PD H + LI+ V D+G++ I
Sbjct: 28 RMDCKVSGLPTPDLSWQLDGKPV--RPD-SAHKMLVRENGVHSLIIEPVTSRDAGIYTCI 84
Query: 1714 AENRGGKAKCSANLVVEEKRQGGRGG 1739
A NR G+ S LVV K G G
Sbjct: 85 ATNRAGQNSFSLELVVAAKESGPSSG 110
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 320 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRTVHAFGMVVLEILGTKIED 377
+ EG++ + + G T + + +GKP+ +++H++ V G+ L I D
Sbjct: 21 VQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDSAHKM-LVRENGVHSLIIEPVTSRD 77
Query: 378 TGVYTCRATNKWGQAEISVNLECVDKSKG 406
G+YTC ATN+ GQ S+ L K G
Sbjct: 78 AGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 36.2 bits (82), Expect = 0.20, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 719 LREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFC-DFGFVILEISPVYPEDC 777
++EG+ + +++ P L W +GKP++ S + + G L I PV D
Sbjct: 21 VQEGKLCRMDCKVSGLPTPDL--SWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDA 78
Query: 778 GQYSCRAYNDYGEAVTSASMKVQGKRS 804
G Y+C A N G+ S + V K S
Sbjct: 79 GIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 34.3 bits (77), Expect = 0.61, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATE 1615
P F+ P VQEG+ R +V+G P P + W ++G + + K+ E
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE 62
Score = 31.6 bits (70), Expect = 4.4, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 404 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM-VS 462
S G P F L +++G +C ++ + P+L W +GKP+ + KM V
Sbjct: 5 SSGFRPHFLQAPGDLT-VQEGKLCRMDCKVSGLPTPDL--SWQLDGKPVRPDSAHKMLVR 61
Query: 463 DFGFVVMDIAYVQSHDSGEYVCRAWN 488
+ G + I V S D+G Y C A N
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATN 87
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 1738 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNL 1797
G + PP F+ + I+ G+ R D K+S DV W NG+ + D +K + +
Sbjct: 1 GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 1798 FTLLIIEAV-VEDSGAYECVAMNNAGEARCEAELVV 1832
LI E V D+GAY CVA N AGEA +L V
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI-NDFGFVI 975
P F+ P ++++ E + +++ P+ V W+ NG+ + + K I ++ G
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGL--PAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 976 LEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQ 1012
L V D+G Y C A N+ GEAT + +L V ++
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATE 1615
P F+ PE + EG R +V+G P P V W +NG T+ ++ + K+ +E
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE 58
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 1052 NPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSD--PTMRIDWFFNGRPFATGSRVKT-VYD 1108
PP F Q+ +N+ + E G+ CR++ K P + W+ NGR + K V +
Sbjct: 4 GPPRFI-QVPENMSIDE-GRF---CRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE 58
Query: 1109 FGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAK 1149
G SL + V A D+G Y C A N+ G A ++ AK
Sbjct: 59 KGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-- 1696
PP F + + E R + + G P P + W+ + S D S K +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD-DLHKMIVSEKGLHS 63
Query: 1697 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 1732
LI V D+G +A +A+NR G+A + L V K
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 526 CRLEPKSD--PTMRIDWFFNGRPFATGSRVKT-VYDFGFISLDMDYVYARDSGEYICRAT 582
CR++ K P + W+ NGR + K V + G SL + V A D+G Y C A
Sbjct: 23 CRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK 82
Query: 583 NKWGTA 588
N+ G A
Sbjct: 83 NRAGEA 88
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 737 PKLKVEWFWNGKPMKTGSRFRTFC-DFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSA 795
P V W+ NG+ +++ + + G L V D G Y+C A N GEA +
Sbjct: 33 PAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTV 92
Query: 796 SMKVQGK 802
+ V K
Sbjct: 93 QLDVLAK 99
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 7 PNLKIEWFKNGVPLS---LGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
P + W+ NG + L I S + GL +L +RA D+ Y C A N GEA
Sbjct: 33 PAPDVSWYLNGRTVQSDDLHKMIVS--EKGLHSLIFEVVRASDAGAYACVAKNRAGEATF 90
Query: 64 TCTLKI 69
T L +
Sbjct: 91 TVQLDV 96
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 328 FEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 385
F+ S +P D V + NG+ +++ H++ V G+ L + D G Y C A
Sbjct: 27 FKVSGLPAPD----VSWYLNGRTVQSDDLHKM-IVSEKGLHSLIFEVVRASDAGAYACVA 81
Query: 386 TNKWGQAEISVNLECVDK 403
N+ G+A +V L+ + K
Sbjct: 82 KNRAGEATFTVQLDVLAK 99
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 95/254 (37%), Gaps = 32/254 (12%)
Query: 346 YN--GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLECVD 402
YN G+ I ++ R+ L I IED G+Y C+AT+ GQ E +V LE
Sbjct: 38 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 97
Query: 403 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS 462
K + + S + K G+ A C ++ + P V W ++H V +S
Sbjct: 98 KLTFR------EVVSPQEFKQGEDAEVVCRVS--SSPAPAVSW------LYHNEEVTTIS 143
Query: 463 DFGFVVM-----DIAYVQSHDSGEYVCRAWNNXXXX-----XXXXXXXXHQIRLPSPSQD 512
D F ++ I + D G Y C I +P S
Sbjct: 144 DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKS-F 202
Query: 513 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYAR 572
N ++ F CR +P I WF NG+ K + L + +
Sbjct: 203 NATAERGEEMTFSCRASGSPEPA--ISWFRNGKLIEENE--KYILKGSNTELTVRNIINS 258
Query: 573 DSGEYICRATNKWG 586
D G Y+CRATNK G
Sbjct: 259 DGGPYVCRATNKAG 272
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 103/270 (38%), Gaps = 64/270 (23%)
Query: 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH-NGKALSAGSRIKTINDFGFVILEIND 980
+ +L++ ES F C T +P +++W++ G+ + + R+ + L I +
Sbjct: 12 SKVELSVGESKF--FTC--TAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYN 66
Query: 981 VYLRDSGLYTCKATNKHG---EATTSC----KLTVKG-------RQGIDVE--------- 1017
+ D+G+Y C+AT+ G EAT KLT + +QG D E
Sbjct: 67 ANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP 126
Query: 1018 -PQVSAIFAN-------------------ATKNIQKLEEALYRKDELIPDEEKPN----- 1052
P VS ++ N NI K +E +YR + + + +
Sbjct: 127 APAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDII 186
Query: 1053 ------PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV 1106
P + Q N ++ F CR +P I WF NG+ K +
Sbjct: 187 VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA--ISWFRNGKLIEENE--KYI 242
Query: 1107 YDFGFISLDMDYVYARDSGEYICRATNKWG 1136
L + + D G Y+CRATNK G
Sbjct: 243 LKGSNTELTVRNIINSDGGPYVCRATNKAG 272
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 1445 FECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATN 1504
F C+ + G P + WF NGK + ++ I + + D G Y+CRATN
Sbjct: 214 FSCRAS--GSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATN 269
Query: 1505 LYGMDETRAILK 1516
G DE +A L+
Sbjct: 270 KAGEDEKQAFLQ 281
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995
F CR + + +P+++ WF NGK + K I L + ++ D G Y C+ATN
Sbjct: 214 FSCRASGSPEPAIS--WFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYVCRATN 269
Query: 996 KHGE 999
K GE
Sbjct: 270 KAGE 273
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 87/230 (37%), Gaps = 28/230 (12%)
Query: 265 LDIVGAYAEDSGIYTVKATNSKG-SATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEG 323
L I A ED+GIY +AT++KG + + L+ ++L + Q +
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE-----VVSPQEFKQGEDA 116
Query: 324 EIA-HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI---EDTG 379
E+ +S P V +LY+ + + R F M+ L D G
Sbjct: 117 EVVCRVSSSPAP------AVSWLYHNEEVTTISDNR----FAMLANNNLQILNINKSDEG 166
Query: 380 VYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD-GDSAHFECTLTPVND 438
+Y C +A ++ + PP + KS + G+ F C +
Sbjct: 167 IYRCEGRV---EARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS--GS 221
Query: 439 PELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 488
PE + WF NGK I K + + + + + D G YVCRA N
Sbjct: 222 PEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYVCRATN 269
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 21/177 (11%)
Query: 1572 QKVQEGEPARFCTRVTGYPRPRVMWLINGH--TIVNEIVRKITATETTEMEHKGKIQE-- 1627
Q+ ++GE A RV+ P P V WL + T +++ + A ++ + K E
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167
Query: 1628 -----RVVDASEKPAKPPVFTKKIQPCRAFEQ----------DQARFEVEFDGDPLPTIK 1672
RV E + + + P + Q ++ F G P P I
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 227
Query: 1673 WFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 1729
WFR I + + + +T+ L +R + D G + A N+ G+ + A L V
Sbjct: 228 WFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 707 PVFTVPLSNIDDLRE-GENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFV 765
P ++P + + E GE F R + + +P + WF NGK ++ ++
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPA--ISWFRNGKLIEENEKY--ILKGSNT 248
Query: 766 ILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKV 799
L + + D G Y CRA N GE A ++V
Sbjct: 249 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 20/136 (14%)
Query: 1748 TISSAVINVGQLARFDAKISATKPLDVYWLK-NGKKIIPDIRYKTLEEDNLFTLLIIEAV 1806
++S ++VG+ ++F + +P + W G+KII R +E L I A
Sbjct: 10 SLSKVELSVGE-SKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN 68
Query: 1807 VEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTVAEPLKDQNV 1866
+ED+G Y C A + G+ + EA +V++ + T E + Q
Sbjct: 69 IEDAGIYRCQATDAKGQTQ-EATVVLEIY-----------------QKLTFREVVSPQEF 110
Query: 1867 KEGSAVTLKCRITGKP 1882
K+G + CR++ P
Sbjct: 111 KQGEDAEVVCRVSSSP 126
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 97/284 (34%), Gaps = 62/284 (21%)
Query: 421 LKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDS 479
L G+S F CT + +PE ++W++ G+ I RV + + + I D+
Sbjct: 16 LSVGESKFFTCT--AIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDA 72
Query: 480 GEYVCRAWNNXXXXXXXXXXXXHQIRLP-----SPSQDNLDVPEAGKVHFDCRLEPKSDP 534
G Y C+A + +L SP + + CR+ S P
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ----EFKQGEDAEVVCRV--SSSP 126
Query: 535 TMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYA-----RDSGEYICR--------- 580
+ W ++ V T+ D F L + + D G Y C
Sbjct: 127 APAVSWLYHNE------EVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEI 180
Query: 581 -----------------------ATNKWGTAMTKAKVICKVLTVIVEWFYNGKKLPHGHR 617
AT + G MT + + WF NGK + +
Sbjct: 181 DFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK 240
Query: 618 Y-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
Y + + + +I+ + G Y CRATNK G D +A L+
Sbjct: 241 YILKGSNTELTVRNII---NSDGGPYVCRATNKAGEDEKQAFLQ 281
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 1741 VPPSFLTTISS--AVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLF 1798
VPP+ S A G+ F + S + + W +NGK I + +Y L+ N
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-ILKGSN-- 247
Query: 1799 TLLIIEAVV-EDSGAYECVAMNNAGEARCEAELVV 1832
T L + ++ D G Y C A N AGE +A L V
Sbjct: 248 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 101/270 (37%), Gaps = 43/270 (15%)
Query: 148 TLTPVNDPELKVEWFH-NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCQWFVNN 206
T T + +PE ++W++ G+ I RV + + + I D+G Y CQ
Sbjct: 25 TCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ----- 78
Query: 207 KPLPAGAKFKTTHDFGYVALDIELMLKTLVPFTEW----------FVNNKPLPA------ 250
AK +T + + +L + +V E+ V++ P PA
Sbjct: 79 ---ATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYH 135
Query: 251 GAKFKTTHDFGYVALDIVGAYA-----EDSGIYTVKATNSKGSATTSGTLKCLERLFVNH 305
+ T D + L D GIY +G G + + + + +
Sbjct: 136 NEEVTTISDNRFAMLANNNLQILNINKSDEGIY-----RCEGRVEARGEIDFRDIIVIVN 190
Query: 306 NYPLFSLQFQHLSNLSE-GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-IRTVHAF 363
P S+ + + +E GE F S G + + NGK IE + + I
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTF--SCRASGSPEPAISWFRNGKLIEENEKYILKGSNT 248
Query: 364 GMVVLEILGTKIEDTGVYTCRATNKWGQAE 393
+ V I+ + D G Y CRATNK G+ E
Sbjct: 249 ELTVRNIINS---DGGPYVCRATNKAGEDE 275
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 57.0 bits (136), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWF-HNGKALSAGSRIKTINDFGFV 974
AP + P DL ++E +A +CR TP P +V+W NG LS SR I+
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR-TP---PMSSVKWLLPNGTVLSHASRHPRISVLNDG 407
Query: 975 ILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
L + V L D+G+YTC TN G + S L V
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 38.5 bits (88), Expect = 0.034, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 1410 YLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFL-NGKPL 1468
YL E D + P F+ + E + + +C+ P+ V+W L NG L
Sbjct: 339 YLVEVDQASFQCSAP--FIMDAPRDLNISEGRMAELKCRTPPMS----SVKWLLPNGTVL 392
Query: 1469 PHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTT 1518
H +R I +NF V D+G Y C TN+ G A L +
Sbjct: 393 SHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 319 NLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIED 377
N+SEG +A + P+ +V++L NG + + R + L + D
Sbjct: 363 NISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSD 418
Query: 378 TGVYTCRATNKWGQAEISVNL 398
TGVYTC TN G + S L
Sbjct: 419 TGVYTCMVTNVAGNSNASAYL 439
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 4 RADPNLKIEWF-KNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAV 62
R P ++W NG LS SR TL+ + + D+ +YTC TN+ G +
Sbjct: 375 RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSN 434
Query: 63 STCTLKI 69
++ L +
Sbjct: 435 ASAYLNV 441
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 513 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFF-NGRPFATGSRVKTVYDFGFISLDMDYVYA 571
+L++ E CR P S + W NG + SR + +L+ +V
Sbjct: 361 DLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLL 416
Query: 572 RDSGEYICRATNKWGTAMTKA 592
D+G Y C TN G + A
Sbjct: 417 SDTGVYTCMVTNVAGNSNASA 437
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 1063 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFF-NGRPFATGSRVKTVYDFGFISLDMDYVYA 1121
+L++ E CR P S + W NG + SR + +L+ +V
Sbjct: 361 DLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLL 416
Query: 1122 RDSGEYICRATNKWGTAMTKA 1142
D+G Y C TN G + A
Sbjct: 417 SDTGVYTCMVTNVAGNSNASA 437
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 1652 FEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFA 1711
+E + ARF + DG+P+PT+ W R+ +++S Q+ T KS + V D G ++
Sbjct: 27 YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 86
Query: 1712 VIAENRGGKAKCSANLVVEE 1731
V+ EN GK + L +++
Sbjct: 87 VVVENSEGKQEAEFTLTIQK 106
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVI 975
A LT P +T+ E A F C +P TV W G+ LS +R +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCD--TDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 71
Query: 976 LEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
EI+ V D G Y+ N G+ LT++
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 38.1 bits (87), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 1562 APVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATE 1615
A +++P + V EGE ARF G P P V WL G + ++T T+
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK 67
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 33/89 (37%)
Query: 1745 FLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIE 1804
LT S + G+ ARF V WL+ G+ + R++ T I
Sbjct: 17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 76
Query: 1805 AVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
D G Y V N+ G+ E L +Q
Sbjct: 77 VQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 706 APVFTVPLSNIDDLREGENAHFEARLTPTD-DPKLKVEWFWNGKPMKTGSRFRTFCDFGF 764
A + T P S + EGE+A F TD +P V W G+ + T +R +
Sbjct: 15 ARILTKPRSMT--VYEGESARFSC---DTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 765 VILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQ 800
EIS V D G YS N G+ ++ +Q
Sbjct: 70 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex With
Sucrose Octasulphate
Length = 214
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 83/226 (36%), Gaps = 48/226 (21%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI--NDFGFV 974
P F+ P D T +A F C+ T +P + W GK +S+ R + I +D
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQAT--GEPKPRITWMKKGKKVSS-QRFEVIEFDDGAGS 63
Query: 975 ILEINDVYL-RDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQK 1033
+L I + + RD +Y C ATN GE TS KL+V
Sbjct: 64 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVL------------------------ 99
Query: 1034 LEEALYRKDELIPDEEKPNPPVFTS-QLQDNLDVPEAGKVH-FDCRLEPKSDPTMRIDWF 1091
EE+ PP F S + L V E + C DP I WF
Sbjct: 100 --------------EEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDP--EISWF 143
Query: 1092 FNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT 1137
+ P + + +L ++ D G+Y C ATN GT
Sbjct: 144 KDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 189
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 13/189 (6%)
Query: 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF--STKSIL 1697
PVF K + A F + G+P P I W ++ + SS F++ F S+L
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSVL 65
Query: 1698 IMRQVFME-DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 1756
++ + ++ D ++ A N G+ SA L V E+ Q +PP F + + V
Sbjct: 66 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQ------LPPGFPSIDMGPQLKV 119
Query: 1757 GQLARFDAKISATKP---LDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAY 1813
+ AR + A ++ W K+ + P +++ L I + D G Y
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKY 179
Query: 1814 ECVAMNNAG 1822
ECVA N+AG
Sbjct: 180 ECVATNSAG 188
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 28/201 (13%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNE---------------- 1606
PVF+ PE Q G A F + TG P+PR+ W+ G + ++
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 66
Query: 1607 -----IVRKITATETTEMEHKGKIQERV-VDASEKPAKPPVFTKKIQPCRAFEQDQARFE 1660
+ R E T G+I + E+ PP F + ++AR
Sbjct: 67 IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTA 126
Query: 1661 VEF---DGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716
G+P P I WF++ P+ ++ + +I + ++ I D G + +A N
Sbjct: 127 TMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQI-ESSEESDQGKYECVATN 185
Query: 1717 RGG-KAKCSANLVVEEKRQGG 1736
G + ANL V +R G
Sbjct: 186 SAGTRYSAPANLYVRVRRVAG 206
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 12/187 (6%)
Query: 308 PLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH--AFGM 365
P+F + + LS G +A F G+ + ++ GK + +S R +
Sbjct: 7 PVFIKVPEDQTGLSGG-VASFVCQA--TGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAG 62
Query: 366 VVLEILGTKIE-DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS--HIKSLEGLK 422
VL I +++ D +Y C ATN G+ S L +++ + PP F S L+ ++
Sbjct: 63 SVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQ-LPPGFPSIDMGPQLKVVE 121
Query: 423 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 482
+A C DPE + WF + P+ + + I + D G+Y
Sbjct: 122 KARTATMLCAAGGNPDPE--ISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKY 179
Query: 483 VCRAWNN 489
C A N+
Sbjct: 180 ECVATNS 186
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 68/198 (34%), Gaps = 50/198 (25%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVT-LSINSLRAD-DSAIYTCKATNLLGEAV 62
+P +I W K G +S FD G + L I LR D AIY C ATN LGE
Sbjct: 32 GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEIN 91
Query: 63 STCTLKIEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKE 122
++ L + + L P P I+ P+L
Sbjct: 92 TSAKLSVLEEEQL------PPGFPSID----------MGPQLKV---------------- 119
Query: 123 NENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 182
VE ++ ATM LC DPE + WF + P+ +
Sbjct: 120 ---------VEKARTATM-----LCAAGGNPDPE--ISWFKDFLPVDPATSNGRIKQLRS 163
Query: 183 VVMDIAYVQSHDSGEYVC 200
+ I + D G+Y C
Sbjct: 164 GALQIESSEESDQGKYEC 181
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 734 TDDPKLKVEWFWNGKPMKTGSRFRT--FCDFGFVILEISPVYPE-DCGQYSCRAYNDYGE 790
T +PK ++ W GK + + RF F D +L I P+ + D Y C A N GE
Sbjct: 31 TGEPKPRITWMKKGKKVSS-QRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGE 89
Query: 791 AVTSASMKVQGKRSIILESQLPKG 814
TSA K S++ E QLP G
Sbjct: 90 INTSA------KLSVLEEEQLPPG 107
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1757 GQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE-EDNLFTLLIIEA--VVEDSGAY 1813
G +A F + + + W+K GKK+ R++ +E +D ++L I+ V D Y
Sbjct: 21 GGVASFVCQATGEPKPRITWMKKGKKVSSQ-RFEVIEFDDGAGSVLRIQPLRVQRDEAIY 79
Query: 1814 ECVAMNNAGEARCEAELVV 1832
EC A N+ GE A+L V
Sbjct: 80 ECTATNSLGEINTSAKLSV 98
Score = 33.9 bits (76), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 60/171 (35%), Gaps = 9/171 (5%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN-RVKMVSDFGFVVMDIAYVQ-SHDSGE 481
G A F C T +P+ ++ W GK + + V D V+ I ++ D
Sbjct: 21 GGVASFVCQAT--GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAI 78
Query: 482 YVCRAWNNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR-----LEPKSDPTM 536
Y C A N+ + P ++D+ KV R +P
Sbjct: 79 YECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDP 138
Query: 537 RIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT 587
I WF + P + + +L ++ D G+Y C ATN GT
Sbjct: 139 EISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 189
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 274 DSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLI 333
D IY ATNS G TS L LE + +P + Q L E A L
Sbjct: 75 DEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQ----LKVVEKARTATMLC 130
Query: 334 PV-GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 390
G+ + + + P++ + + L+I ++ D G Y C ATN G
Sbjct: 131 AAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFIS 1113
PVF +D + G F C + +P RI W G+ ++ +D G S
Sbjct: 7 PVFIKVPEDQTGL-SGGVASFVC--QATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS 63
Query: 1114 L--DMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHDIVTESQLPDSMSA----EKL 1167
+ RD Y C ATN G T AK+ ++ E QLP + +L
Sbjct: 64 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKL------SVLEEEQLPPGFPSIDMGPQL 117
Query: 1168 KELEKNYT 1175
K +EK T
Sbjct: 118 KVVEKART 125
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The
Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The
Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 1652 FEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFA 1711
+E + ARF + DG+P+PT+ W R+ +++S Q+ T KS + V D G ++
Sbjct: 21 YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 80
Query: 1712 VIAENRGGKAKCSANLVVEE 1731
V+ EN GK + L +++
Sbjct: 81 VVVENSEGKQEAEFTLTIQK 100
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVI 975
+ LT P +T+ E A F C +P TV W G+ LS +R +
Sbjct: 8 SSRILTKPRSMTVYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 65
Query: 976 LEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
EI+ V D G Y+ N G+ LT++
Sbjct: 66 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 99
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 1565 FVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATE 1615
+++P + V EGE ARF G P P V WL G + ++T T+
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK 61
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 33/89 (37%)
Query: 1745 FLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIE 1804
LT S + G+ ARF V WL+ G+ + R++ T I
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 70
Query: 1805 AVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
D G Y V N+ G+ E L +Q
Sbjct: 71 VQASDEGNYSVVVENSEGKQEAEFTLTIQ 99
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 721 EGENAHFEARLTPTD-DPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQ 779
EGE+A F TD +P V W G+ + T +R + EIS V D G
Sbjct: 22 EGESARFSC---DTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGN 78
Query: 780 YSCRAYNDYGEAVTSASMKVQ 800
YS N G+ ++ +Q
Sbjct: 79 YSVVVENSEGKQEAEFTLTIQ 99
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 89/229 (38%), Gaps = 54/229 (23%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI--NDFGFV 974
P F+ P D T +A F C+ T +P + W GK +S+ R + I +D
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQAT--GEPKPRITWMKKGKKVSS-QRFEVIEFDDGAGS 64
Query: 975 ILEINDVYL-RDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQK 1033
+L I + + RD +Y C ATN GE TS KL+V
Sbjct: 65 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV------------------------- 99
Query: 1034 LEEALYRKDELIPDEEKPNPPVF-TSQLQDNLDVPEAGKVH-FDCRLEPKSDPTMRIDW- 1090
LEE D+L P F T + L V E G+ C DP I W
Sbjct: 100 LEE-----DQL--------PSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDP--EISWF 144
Query: 1091 --FFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT 1137
F P A+ R+K + +L ++ D G+Y C ATN GT
Sbjct: 145 KDFLPVDPAASNGRIKQLRSG---ALQIESSEESDQGKYECVATNSAGT 190
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 15/190 (7%)
Query: 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF--STKSIL 1697
PVF K + A F + G+P P I W ++ + SS F++ F S+L
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSVL 66
Query: 1698 IMRQVFME-DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA---- 1752
++ + ++ D ++ A N G+ SA L V E+ Q PS TI
Sbjct: 67 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQ-------LPSGFPTIDMGPQLK 119
Query: 1753 VINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGA 1812
V+ G+ A ++ W K+ + P +++ L I + D G
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGK 179
Query: 1813 YECVAMNNAG 1822
YECVA N+AG
Sbjct: 180 YECVATNSAG 189
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 32/196 (16%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIV------------------ 1604
PVFV PE Q G A F + TG P+PR+ W+ G +
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 1605 --------NEIVRKITATET-TEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQD 1655
+E + + TAT + E+ K+ V++ + P+ P Q +
Sbjct: 68 IQPLRVQRDEAIYECTATNSLGEINTSAKLS--VLEEDQLPSGFPTIDMGPQLKVVEKGR 125
Query: 1656 QARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 1714
A G+P P I WF++ P+ ++ + +I + ++ I D G + +A
Sbjct: 126 TATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQI-ESSEESDQGKYECVA 184
Query: 1715 ENRGG-KAKCSANLVV 1729
N G + ANL V
Sbjct: 185 TNSAGTRYSAPANLYV 200
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 734 TDDPKLKVEWFWNGKPMKTGSRFRT--FCDFGFVILEISPVYPE-DCGQYSCRAYNDYGE 790
T +PK ++ W GK + + RF F D +L I P+ + D Y C A N GE
Sbjct: 32 TGEPKPRITWMKKGKKVSS-QRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGE 90
Query: 791 AVTSASMKVQGKRSIILESQLPKG 814
TSA K S++ E QLP G
Sbjct: 91 INTSA------KLSVLEEDQLPSG 108
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 12/191 (6%)
Query: 304 NHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-- 361
+ + P+F + + LS G +A F G+ + ++ GK + +S R +
Sbjct: 4 SDSKPVFVKVPEDQTGLSGG-VASFVCQA--TGEPKPRITWMKKGKKV-SSQRFEVIEFD 59
Query: 362 AFGMVVLEILGTKIE-DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS--HIKSL 418
VL I +++ D +Y C ATN G+ S L +++ + P F + L
Sbjct: 60 DGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQ-LPSGFPTIDMGPQL 118
Query: 419 EGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 478
+ ++ G +A C DPE + WF + P+ + + I + D
Sbjct: 119 KVVEKGRTATMLCAAGGNPDPE--ISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESD 176
Query: 479 SGEYVCRAWNN 489
G+Y C A N+
Sbjct: 177 QGKYECVATNS 187
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 67/198 (33%), Gaps = 50/198 (25%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVT-LSINSLRAD-DSAIYTCKATNLLGEAV 62
+P +I W K G +S FD G + L I LR D AIY C ATN LGE
Sbjct: 33 GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEIN 92
Query: 63 STCTLKIEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKE 122
++ L + + L P P I+ P+L
Sbjct: 93 TSAKLSVLEEDQL------PSGFPTID----------MGPQLKV---------------- 120
Query: 123 NENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 182
VE + ATM LC DPE + WF + P+ +
Sbjct: 121 ---------VEKGRTATM-----LCAAGGNPDPE--ISWFKDFLPVDPAASNGRIKQLRS 164
Query: 183 VVMDIAYVQSHDSGEYVC 200
+ I + D G+Y C
Sbjct: 165 GALQIESSEESDQGKYEC 182
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1757 GQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE-EDNLFTLLIIEA--VVEDSGAY 1813
G +A F + + + W+K GKK+ R++ +E +D ++L I+ V D Y
Sbjct: 22 GGVASFVCQATGEPKPRITWMKKGKKVSSQ-RFEVIEFDDGAGSVLRIQPLRVQRDEAIY 80
Query: 1814 ECVAMNNAGEARCEAELVV 1832
EC A N+ GE A+L V
Sbjct: 81 ECTATNSLGEINTSAKLSV 99
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 274 DSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLI 333
D IY ATNS G TS L LE + +P + Q L + +G A +
Sbjct: 76 DEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQ-LKVVEKGRTATMLCAA- 133
Query: 334 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 390
G+ + + + P++ + + L+I ++ D G Y C ATN G
Sbjct: 134 -GGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 73/191 (38%), Gaps = 20/191 (10%)
Query: 409 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN-RVKMVSDFGFV 467
P F + GL G A F C T +P+ ++ W GK + + V D
Sbjct: 8 PVFVKVPEDQTGLSGG-VASFVCQAT--GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS 64
Query: 468 VMDIAYVQ-SHDSGEYVCRAWNNXXX-XXXXXXXXXHQIRLPS--PSQD---NLDVPEAG 520
V+ I ++ D Y C A N+ + +LPS P+ D L V E G
Sbjct: 65 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKG 124
Query: 521 KVH-FDCRLEPKSDPTMRIDWF---FNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGE 576
+ C DP I WF P A+ R+K + +L ++ D G+
Sbjct: 125 RTATMLCAAGGNPDP--EISWFKDFLPVDPAASNGRIKQLRSG---ALQIESSEESDQGK 179
Query: 577 YICRATNKWGT 587
Y C ATN GT
Sbjct: 180 YECVATNSAGT 190
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFIS 1113
PVF +D + G F C+ +P RI W G+ ++ +D G S
Sbjct: 8 PVFVKVPEDQTGL-SGGVASFVCQA--TGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS 64
Query: 1114 L--DMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHDIVTESQLPDSMS----AEKL 1167
+ RD Y C ATN G T AK+ ++ E QLP +L
Sbjct: 65 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKL------SVLEEDQLPSGFPTIDMGPQL 118
Query: 1168 KELEKNYT 1175
K +EK T
Sbjct: 119 KVVEKGRT 126
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWF-HNGKALSAGSRIKTINDFGFV 974
P + P DL ++E +A +CR TP P +V+W NG LS SR I+
Sbjct: 7 GPFIMDAPRDLNISEGRMAELKCR-TP---PMSSVKWLLPNGTVLSHASRHPRISVLNDG 62
Query: 975 ILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
L + V L D+G+YTC TN G + S L V
Sbjct: 63 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
Score = 39.3 bits (90), Expect = 0.019, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 1427 FVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFL-NGKPLPHKNRFNPIYDFGYVAM 1485
F+ + E + + +C+ P+ V+W L NG L H +R I +
Sbjct: 9 FIMDAPRDLNISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLNDGTL 64
Query: 1486 NFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKP 1521
NF V D+G Y C TN+ G A L + P
Sbjct: 65 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGP 100
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 319 NLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIED 377
N+SEG +A + P+ +V++L NG + + R + L + D
Sbjct: 18 NISEGRMAELKCRTPPMS----SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSD 73
Query: 378 TGVYTCRATNKWGQAEISVNL 398
TGVYTC TN G + S L
Sbjct: 74 TGVYTCMVTNVAGNSNASAYL 94
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 4 RADPNLKIEWF-KNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAV 62
R P ++W NG LS SR TL+ + + D+ +YTC TN+ G +
Sbjct: 30 RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSN 89
Query: 63 STCTLKI 69
++ L +
Sbjct: 90 ASAYLNV 96
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 513 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFF-NGRPFATGSRVKTVYDFGFISLDMDYVYA 571
+L++ E CR P S + W NG + SR + +L+ +V
Sbjct: 16 DLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLL 71
Query: 572 RDSGEYICRATNKWGTAMTKA 592
D+G Y C TN G + A
Sbjct: 72 SDTGVYTCMVTNVAGNSNASA 92
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 1063 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFF-NGRPFATGSRVKTVYDFGFISLDMDYVYA 1121
+L++ E CR P S + W NG + SR + +L+ +V
Sbjct: 16 DLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLL 71
Query: 1122 RDSGEYICRATNKWGTAMTKA 1142
D+G Y C TN G + A
Sbjct: 72 SDTGVYTCMVTNVAGNSNASA 92
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 1736 GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD-VYWL-KNGKKIIPDIRYKTLE 1793
G G P + I+ G++A + T P+ V WL NG + R+ +
Sbjct: 1 GSSGSSGPFIMDAPRDLNISEGRMAELKCR---TPPMSSVKWLLPNGTVLSHASRHPRIS 57
Query: 1794 EDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
N TL ++ D+G Y C+ N AG + A L V S
Sbjct: 58 VLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSS 98
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 128/360 (35%), Gaps = 80/360 (22%)
Query: 1493 EDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQ 1552
EDSG+YLC N G + +L T
Sbjct: 316 EDSGKYLCVVNNSVGGESVETVLTVTA--------------------------------- 342
Query: 1553 LVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKIT 1612
P A + P Q V G PA F + TG P V W+ +G I + +
Sbjct: 343 ------PLSAKI---DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--ESVL 391
Query: 1613 ATETTEMEHKGKIQERVVD---ASEKPAK--------PPVFTKKIQPCRAFEQDQARFEV 1661
E+ + E KG Q V + ++E A+ PPV + Q +
Sbjct: 392 RIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKC 451
Query: 1662 EFDGDPLPTIKWFREDFPITSSPDFQIHTFST-----KSILIMRQVFMEDSGVFAVIAEN 1716
G+P P I W + I ++ +Q+ + T S L + V D G++ IA++
Sbjct: 452 VAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKS 511
Query: 1717 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD-VY 1775
+ G A+ SA L V ++ + I G+ + A P+D +
Sbjct: 512 KVGVAEHSAKL-----------NVYGLPYIRQMEKKAIVAGETLIVTCPV-AGYPIDSIV 559
Query: 1776 WLKNGKKIIPDIRYKTLEEDNLFTLLIIEAV--VEDSGAYECVAMNNAG-EARCEAELVV 1832
W ++ + + + + K LIIE V D Y CVA N G AR E+ V
Sbjct: 560 WERDNRALPINRKQKVFPNGT----LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQV 615
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 90/227 (39%), Gaps = 30/227 (13%)
Query: 265 LDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGE 324
L I A EDSG Y NS G + L L + P ++ F G
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--------GR 359
Query: 325 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 384
A F G+ TV ++ +GK I S VL I K ED G+Y C
Sbjct: 360 PAVFTCQY--TGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCF 407
Query: 385 ATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVE 444
N AE S L+ + PP + E ++ G S +C +P ++
Sbjct: 408 VRNDRESAEASAELKL--GGRFDPPVIRQAFQE-ETMEPGPSVFLKCVAG--GNPTPEIS 462
Query: 445 WFHNGKPIFHKNRVKM---VSDFGFVV--MDIAYVQSHDSGEYVCRA 486
W +GK I + +R ++ V+ G VV ++I V ++D G Y C A
Sbjct: 463 WELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIA 509
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 110/323 (34%), Gaps = 79/323 (24%)
Query: 375 IEDTGVYTCRATNKWGQAEISVNLECVD--KSKGQPPKFTSHIKSLEGLKDGDSAHFECT 432
+ED+G Y C N G + L +K PP T G A F C
Sbjct: 315 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--------GRPAVFTCQ 366
Query: 433 LTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNNXXX 492
T +P V W +GK I H V + I V+ D G Y C N+
Sbjct: 367 YT--GNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRES 414
Query: 493 XXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPK----------SDPTMRIDWFF 542
+++L D P + + +EP +PT I W
Sbjct: 415 AEASA-----ELKLGG----RFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL 465
Query: 543 NGRPFATGSRVK-----TVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAK---- 593
+G+ A R + TV L++ V+A D G Y C A +K G A AK
Sbjct: 466 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525
Query: 594 --------------------VICKVLTVIVE---WFYNGKKLPHGHRYRTFHDFGIVILD 630
V C V ++ W + + LP + + F + ++I +
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIEN 585
Query: 631 ILYCYEENS--GVYECRATNKYG 651
+ E NS Y C A N+ G
Sbjct: 586 V----ERNSDQATYTCVAKNQEG 604
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 40/221 (18%)
Query: 1665 GDPLPTIKWFR--EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 1722
G P+P +W++ E + LI++ +EDSG + + N G
Sbjct: 274 GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 333
Query: 1723 CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKK 1782
L V P S + ++ G+ A F + + V W+K+GK
Sbjct: 334 VETVLTV----------TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKA 383
Query: 1783 IIPDIRYKTLEEDNLFTLLIIEAVV-EDSGAYECVAMNNAGEARCEAELVVQSXXXXXXX 1841
I + ++L IE+V ED G Y+C N+ A AEL +
Sbjct: 384 I-----------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF----- 427
Query: 1842 XXXXXXXXXXDEAPTVAEPLKDQNVKEGSAVTLKCRITGKP 1882
+ P + + +++ ++ G +V LKC G P
Sbjct: 428 -----------DPPVIRQAFQEETMEPGPSVFLKCVAGGNP 457
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 72/216 (33%), Gaps = 59/216 (27%)
Query: 934 AHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993
A F C+ T +P TV W +GKA+ + L I V D G+Y C
Sbjct: 361 AVFTCQYT--GNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFV 408
Query: 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNP 1053
N A S +L + GR +P
Sbjct: 409 RNDRESAEASAELKLGGRF---------------------------------------DP 429
Query: 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVK-----TVYD 1108
PV Q+ P V C +PT I W +G+ A R + TV
Sbjct: 430 PVIRQAFQEETMEP-GPSVFLKCVA--GGNPTPEISWELDGKKIANNDRYQVGQYVTVNG 486
Query: 1109 FGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKV 1144
L++ V+A D G Y C A +K G A AK+
Sbjct: 487 DVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 42/155 (27%)
Query: 1749 ISSAVINVGQLARFDAKISATK------------PLDVY-WLK------NGKKIIPDIRY 1789
ISSAV V LA+FD K + P+ V+ W K + ++ + R
Sbjct: 242 ISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRV 301
Query: 1790 KTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXX 1849
K + TL+I +AVVEDSG Y CV N+ G E L V +
Sbjct: 302 KQVSG----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI--------- 348
Query: 1850 XXDEAPTVAEPLKDQNVKEGSAVTLKCRITGKPRK 1884
+ PT Q V G C+ TG P K
Sbjct: 349 ---DPPT-------QTVDFGRPAVFTCQYTGNPIK 373
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 944 NDPSMTVEWFHNGKALSAGSRIK-----TINDFGFVILEINDVYLRDSGLYTCKATNKHG 998
+P+ + W +GK ++ R + T+N L I V+ D GLY C A +K G
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514
Query: 999 EATTSCKLTVKG 1010
A S KL V G
Sbjct: 515 VAEHSAKLNVYG 526
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 92/417 (22%), Positives = 136/417 (32%), Gaps = 117/417 (28%)
Query: 1453 GDPNMKVEWFLNGKPLPHKNRFNPIYDFG-YVA--------MNFGWVYPEDSGEYLCRAT 1503
G+P ++ W L+GK + + +R Y G YV +N V+ D G Y C A
Sbjct: 455 GNPTPEISWELDGKKIANNDR----YQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510
Query: 1504 NLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAP 1563
+ G+ E A L G P
Sbjct: 511 SKVGVAEHSAKLNVYGLP------------------------------------------ 528
Query: 1564 VFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMW---------------LINGHTIVNEIV 1608
++ Q E + + GE V GYP ++W NG I+ +
Sbjct: 529 -YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE 587
Query: 1609 RKI-TATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQAR------FEV 1661
R AT T +++ R + P +I P AFE+ A+
Sbjct: 588 RNSDQATYTCVAKNQEGYSARGSLEVQVMVLP-----RIIPF-AFEEGPAQVGQYLTLHC 641
Query: 1662 EFDGDPLP-TIKW------FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 1714
G LP I W ED IT+S S+L + V +G F A
Sbjct: 642 SVPGGDLPLNIDWTLDGQAISEDLGITTS-----RVGRRGSVLTIEAVEASHAGNFTCHA 696
Query: 1715 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDV 1774
N G + + L V VPP ++ + G A+ + K V
Sbjct: 697 RNLAGHQQFTTPLNV----------YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQV 746
Query: 1775 YWLKNGKKIIPDI--RYKTLEE-DNL----FTLLIIEAVVEDSGAYECVAMNNAGEA 1824
W KK + D YK L++ DN+ TL + + G Y C A+N G
Sbjct: 747 TW----KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSG 799
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 86/385 (22%), Positives = 144/385 (37%), Gaps = 55/385 (14%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLK 296
P W +N + G F+ + G + ++ +D+G Y ATNS G+ +
Sbjct: 37 PHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNK-TQDAGTYQCIATNSFGTIVSREA-- 93
Query: 297 CLERLFVNHNYPLFSLQFQHLSNL-----SEGEIAHFEASLIPVG----DQTMTVEFLYN 347
LQF +L N S + + ++ G ++ +++N
Sbjct: 94 --------------KLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN 139
Query: 348 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI----SVNLECVDK 403
P +R G L I + D G YTC TN ++ + + D
Sbjct: 140 EYPSYQDNRRFVSQETGN--LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDG 197
Query: 404 SKGQ-PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMV 461
G+ PK + G + EC + +P + W +GKPI K R
Sbjct: 198 VMGEYEPKIEVQFPETVPAEKGTTVKLECFA--LGNPVPTILWRRADGKPIARKARRHKS 255
Query: 462 SDFGFVVMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQ--DNLDVPEA 519
+ +++I Q D+G Y C A N+ + P+ Q +++ V
Sbjct: 256 NG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA--QPNWVQIINDIHVAME 309
Query: 520 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYIC 579
V ++C+ + PT R W NG P T R++ +L++ V D+G Y C
Sbjct: 310 ESVFWECKANGRPKPTYR--WLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQC 363
Query: 580 RATNKWGTAMTKAKVICKVLTVIVE 604
A NK G + A+ L+VI E
Sbjct: 364 VAENKHGVIFSSAE-----LSVIAE 383
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/420 (21%), Positives = 150/420 (35%), Gaps = 86/420 (20%)
Query: 1439 EMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVY-----PE 1493
E + K C++ G+P + W LNG + + DF Y ++ + +
Sbjct: 21 EEKKVKLSCEVK--GNPKPHIRWKLNGTDV------DIGMDFRYSVVDGSLLINNPNKTQ 72
Query: 1494 DSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIR------------- 1540
D+G Y C ATN +G I+ K Y +S +R
Sbjct: 73 DAGTYQCIATNSFG-----TIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPP 127
Query: 1541 ---EMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQ----KVQEGEPARFCTRVTGYPRPR 1593
E+ +W +D + FVSQ KV++ + + VT
Sbjct: 128 HSGELSYAWIFNEYPSYQDNR-----RFVSQETGNLYIAKVEKSDVGNYTCVVTN----- 177
Query: 1594 VMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFE 1653
+ H ++ I + E++ KI+ + P P A +
Sbjct: 178 ---TVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQF------PETVP----------AEK 218
Query: 1654 QDQARFEVEFDGDPLPTIKWFREDF-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV 1712
+ E G+P+PTI W R D PI + + IL + ED+G +
Sbjct: 219 GTTVKLECFALGNPVPTILWRRADGKPIAR----KARRHKSNGILEIPNFQQEDAGSYEC 274
Query: 1713 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL 1772
+AEN GK L + P+++ I+ + + + ++ K +
Sbjct: 275 VAENSRGKNVAKGQLTFYAQ----------PNWVQIINDIHVAMEESVFWECKANGRPKP 324
Query: 1773 DVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
WLKNG ++ R + E + I+ + D+G Y+CVA N G AEL V
Sbjct: 325 TYRWLKNGDPLLTRDRIQI--EQGTLNITIVN--LSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 162/458 (35%), Gaps = 102/458 (22%)
Query: 706 APVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFV 765
PVF S++ + E + +PK + W NG + G FR G +
Sbjct: 4 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 63
Query: 766 ILEISPVYPEDCGQYSCRAYNDYGEAV-----------------TSASMKVQ-GKRSIIL 807
++ +P +D G Y C A N +G V T +++ V+ G+ ++L
Sbjct: 64 LIN-NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLL 122
Query: 808 ESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLP 867
P E +S+ I YP +Y D V+ + + +++
Sbjct: 123 CGPPPHSGE--LSYAWIFNEYP---------SYQDNRRFVSQETGN-------LYIAKVE 164
Query: 868 KGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLT 927
K G + H+ I +G E E +IE PE T P +
Sbjct: 165 KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQF---PE--TVPAE-- 217
Query: 928 LAESTLAHFECRLTPTNDPSMTVEWFH-NGKALSAGSRIKTINDFGFVILEINDVYLRDS 986
+ T EC +P T+ W +GK ++ +R N ILEI + D+
Sbjct: 218 --KGTTVKLEC--FALGNPVPTILWRRADGKPIARKARRHKSNG----ILEIPNFQQEDA 269
Query: 987 GLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIP 1046
G Y C A N G KN+ K + Y + +
Sbjct: 270 GSYECVAENSRG------------------------------KNVAKGQLTFYAQPNWV- 298
Query: 1047 DEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV 1106
Q+ +++ V V ++C+ + PT R W NG P T R++
Sbjct: 299 ------------QIINDIHVAMEESVFWECKANGRPKPTYR--WLKNGDPLLTRDRIQIE 344
Query: 1107 YDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKV 1144
+L++ V D+G Y C A NK G + A++
Sbjct: 345 QG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 378
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 105/296 (35%), Gaps = 43/296 (14%)
Query: 127 HFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD 186
+F R + G +L P + EL W N P + NR + + G +
Sbjct: 102 NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLY-- 159
Query: 187 IAYVQSHDSGEYVC---QWFVNNKPL--PAGAKFKTTHDFGYVALDIELMLKTLVPF--- 238
IA V+ D G Y C N+K L P + G IE+ VP
Sbjct: 160 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 219
Query: 239 ----TEWFVNNKPLPAG----------AKFKTTHDFGYVALDIVGAYAEDSGIYTVKATN 284
E F P+P A+ H + L+I ED+G Y A N
Sbjct: 220 TTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI-LEIPNFQQEDAGSYECVAEN 278
Query: 285 SKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 344
S+G G L + N+ +Q + +++ E +E G T +
Sbjct: 279 SRGKNVAKGQLT----FYAQPNW----VQIINDIHVAMEESVFWECKA--NGRPKPTYRW 328
Query: 345 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG----QAEISV 396
L NG P+ RI+ L I + D G+Y C A NK G AE+SV
Sbjct: 329 LKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVIL 976
P ++ D+ +A +EC+ P T W NG L RI+ L
Sbjct: 295 PNWVQIINDIHVAMEESVFWECKAN--GRPKPTYRWLKNGDPLLTRDRIQIEQG----TL 348
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
I V L D+G+Y C A NKHG +S +L+V
Sbjct: 349 NITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 114/334 (34%), Gaps = 63/334 (18%)
Query: 374 KIEDTGVYTCRATNKWG---QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFE 430
K +D G Y C ATN +G E + ++ F + +S ++ G
Sbjct: 70 KTQDAGTYQCIATNSFGTIVSREAKLQFAYLE-------NFKTRTRSTVSVRRGQGMVLL 122
Query: 431 CTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNNX 490
C P + EL W N P + NR + + G + IA V+ D G Y C N
Sbjct: 123 CG-PPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLY--IAKVEKSDVGNYTCVVTNTV 179
Query: 491 XXXXXX-----------XXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRID 539
++ ++ + + + V +C +P I
Sbjct: 180 TNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA--LGNPVPTIL 237
Query: 540 W-FFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKV---- 594
W +G+P A +R L++ D+G Y C A N G + K ++
Sbjct: 238 WRRADGKPIARKARRHKSNGI----LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA 293
Query: 595 ------ICKVLTVIVE------------------WFYNGKKLPHGHRYRTFHDFGIVILD 630
I + V +E W NG L R + L+
Sbjct: 294 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLN 349
Query: 631 ILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 664
I ++G+Y+C A NK+G + A L +++
Sbjct: 350 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 383
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 135/411 (32%), Gaps = 113/411 (27%)
Query: 438 DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYV-----QSHDSGEYVCRAWNN--X 490
+P+ + W NG V + DF + V+D + + ++ D+G Y C A N+
Sbjct: 34 NPKPHIRWKLNG------TDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGT 87
Query: 491 XXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATG 550
+ + ++ + V + C P S + W FN P
Sbjct: 88 IVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSG-ELSYAWIFNEYPSYQD 146
Query: 551 SRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVIC-------------- 596
+R + G +L + V D G Y C TN +T KV+
Sbjct: 147 NRRFVSQETG--NLYIAKVEKSDVGNYTCVVTN----TVTNHKVLGPPTPLILRNDGVMG 200
Query: 597 -----------------KVLTVIVEWFYNGKKLPH-----------GHRYRTFHDFGIVI 628
K TV +E F G +P + R GI
Sbjct: 201 EYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI-- 258
Query: 629 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEGMEGGLEKIQTLE 688
L+I +E++G YEC A N G +V K L ++ N + Q+ + +E+ E
Sbjct: 259 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV---QIINDIHVAMEESVFWE 315
Query: 689 DAAHLRRTETADIEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGK 748
A+ R PK W NG
Sbjct: 316 CKANGR------------------------------------------PKPTYRWLKNGD 333
Query: 749 PMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKV 799
P+ T R R + G L I+ V D G Y C A N +G +SA + V
Sbjct: 334 PLLT--RDRIQIEQG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEA 61
E + +P I W NG + +G R + G + ++ N + D+ Y C ATN G
Sbjct: 30 EVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLIN-NPNKTQDAGTYQCIATNSFGTI 88
Query: 62 VS 63
VS
Sbjct: 89 VS 90
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 518 EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVY-----AR 572
E KV C E K +P I W NG G DF + +D + +
Sbjct: 21 EEKKVKLSC--EVKGNPKPHIRWKLNGTDVDIG------MDFRYSVVDGSLLINNPNKTQ 72
Query: 573 DSGEYICRATNKWGTAMTK 591
D+G Y C ATN +GT +++
Sbjct: 73 DAGTYQCIATNSFGTIVSR 91
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 1636 PAKPPVFTKKIQPCRAF-----EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 1690
P PVF + +P E+ + + E G+P P I+W + DF+ ++
Sbjct: 1 PGSGPVFVQ--EPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFR-YS 57
Query: 1691 FSTKSILIMRQVFMEDSGVFAVIAENRGG 1719
S+LI +D+G + IA N G
Sbjct: 58 VVDGSLLINNPNKTQDAGTYQCIATNSFG 86
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 106 FDSPVFISHLNDVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNG 165
+ P ++ +ND+ E+V ++C+ P+ W NG
Sbjct: 292 YAQPNWVQIINDIHVAMEESVFWECKAN-------------------GRPKPTYRWLKNG 332
Query: 166 KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 200
P+ ++R+++ ++I V D+G Y C
Sbjct: 333 DPLLTRDRIQIEQG----TLNITIVNLSDAGMYQC 363
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCT 66
P W KNG PL RI+ + G TL+I + D+ +Y C A N G S+
Sbjct: 322 PKPTYRWLKNGDPLLTRDRIQ--IEQG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAE 377
Query: 67 LKI 69
L +
Sbjct: 378 LSV 380
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 86/385 (22%), Positives = 144/385 (37%), Gaps = 55/385 (14%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLK 296
P W +N + G F+ + G + ++ +D+G Y ATNS G+ +
Sbjct: 38 PHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNK-TQDAGTYQCIATNSFGTIVSREA-- 94
Query: 297 CLERLFVNHNYPLFSLQFQHLSNL-----SEGEIAHFEASLIPVG----DQTMTVEFLYN 347
LQF +L N S + + ++ G ++ +++N
Sbjct: 95 --------------KLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN 140
Query: 348 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI----SVNLECVDK 403
P +R G L I + D G YTC TN ++ + + D
Sbjct: 141 EYPSYQDNRRFVSQETGN--LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDG 198
Query: 404 SKGQ-PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMV 461
G+ PK + G + EC + +P + W +GKPI K R
Sbjct: 199 VMGEYEPKIEVQFPETVPAEKGTTVKLECFA--LGNPVPTILWRRADGKPIARKARRHKS 256
Query: 462 SDFGFVVMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQ--DNLDVPEA 519
+ +++I Q D+G Y C A N+ + P+ Q +++ V
Sbjct: 257 NG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA--QPNWVQIINDIHVAME 310
Query: 520 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYIC 579
V ++C+ + PT R W NG P T R++ +L++ V D+G Y C
Sbjct: 311 ESVFWECKANGRPKPTYR--WLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQC 364
Query: 580 RATNKWGTAMTKAKVICKVLTVIVE 604
A NK G + A+ L+VI E
Sbjct: 365 VAENKHGVIFSSAE-----LSVIAE 384
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 89/420 (21%), Positives = 150/420 (35%), Gaps = 86/420 (20%)
Query: 1439 EMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVY-----PE 1493
E + K C++ G+P + W LNG + + DF Y ++ + +
Sbjct: 22 EEKKVKLSCEVK--GNPKPHIRWKLNGTDV------DIGMDFRYSVVDGSLLINNPNKTQ 73
Query: 1494 DSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIR------------- 1540
D+G Y C ATN +G I+ K Y +S +R
Sbjct: 74 DAGTYQCIATNSFG-----TIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPP 128
Query: 1541 ---EMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQ----KVQEGEPARFCTRVTGYPRPR 1593
E+ +W +D + FVSQ KV++ + + VT
Sbjct: 129 HSGELSYAWIFNEYPSYQDNR-----RFVSQETGNLYIAKVEKSDVGNYTCVVTN----- 178
Query: 1594 VMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFE 1653
+ H ++ I + E++ KI+ + P P A +
Sbjct: 179 ---TVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQF------PETVP----------AEK 219
Query: 1654 QDQARFEVEFDGDPLPTIKWFREDF-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV 1712
+ E G+P+PTI W R D PI + + IL + ED+G +
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPIAR----KARRHKSNGILEIPNFQQEDAGSYEC 275
Query: 1713 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL 1772
+AEN GK L + P+++ I+ + + + ++ K +
Sbjct: 276 VAENSRGKNVAKGQLTFYAQ----------PNWVQIINDIHVAMEESVFWECKANGRPKP 325
Query: 1773 DVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
WLKNG ++ R + E + I+ + D+G Y+CVA N G AEL V
Sbjct: 326 TYRWLKNGDPLLTRDRIQI--EQGTLNITIVN--LSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 162/458 (35%), Gaps = 102/458 (22%)
Query: 706 APVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFV 765
PVF S++ + E + +PK + W NG + G FR G +
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 766 ILEISPVYPEDCGQYSCRAYNDYGEAV-----------------TSASMKVQ-GKRSIIL 807
++ +P +D G Y C A N +G V T +++ V+ G+ ++L
Sbjct: 65 LIN-NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLL 123
Query: 808 ESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLP 867
P E +S+ I YP +Y D V+ + + +++
Sbjct: 124 CGPPPHSGE--LSYAWIFNEYP---------SYQDNRRFVSQETGN-------LYIAKVE 165
Query: 868 KGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLT 927
K G + H+ I +G E E +IE PE T P +
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQF---PE--TVPAE-- 218
Query: 928 LAESTLAHFECRLTPTNDPSMTVEWFH-NGKALSAGSRIKTINDFGFVILEINDVYLRDS 986
+ T EC +P T+ W +GK ++ +R N ILEI + D+
Sbjct: 219 --KGTTVKLEC--FALGNPVPTILWRRADGKPIARKARRHKSNG----ILEIPNFQQEDA 270
Query: 987 GLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIP 1046
G Y C A N G KN+ K + Y + +
Sbjct: 271 GSYECVAENSRG------------------------------KNVAKGQLTFYAQPNWV- 299
Query: 1047 DEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV 1106
Q+ +++ V V ++C+ + PT R W NG P T R++
Sbjct: 300 ------------QIINDIHVAMEESVFWECKANGRPKPTYR--WLKNGDPLLTRDRIQIE 345
Query: 1107 YDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKV 1144
+L++ V D+G Y C A NK G + A++
Sbjct: 346 QG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 105/296 (35%), Gaps = 43/296 (14%)
Query: 127 HFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD 186
+F R + G +L P + EL W N P + NR + + G +
Sbjct: 103 NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLY-- 160
Query: 187 IAYVQSHDSGEYVC---QWFVNNKPL--PAGAKFKTTHDFGYVALDIELMLKTLVPF--- 238
IA V+ D G Y C N+K L P + G IE+ VP
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 239 ----TEWFVNNKPLPAG----------AKFKTTHDFGYVALDIVGAYAEDSGIYTVKATN 284
E F P+P A+ H + L+I ED+G Y A N
Sbjct: 221 TTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI-LEIPNFQQEDAGSYECVAEN 279
Query: 285 SKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 344
S+G G L + N+ +Q + +++ E +E G T +
Sbjct: 280 SRGKNVAKGQLT----FYAQPNW----VQIINDIHVAMEESVFWECKA--NGRPKPTYRW 329
Query: 345 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG----QAEISV 396
L NG P+ RI+ L I + D G+Y C A NK G AE+SV
Sbjct: 330 LKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVIL 976
P ++ D+ +A +EC+ P T W NG L RI+ L
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKAN--GRPKPTYRWLKNGDPLLTRDRIQIEQG----TL 349
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
I V L D+G+Y C A NKHG +S +L+V
Sbjct: 350 NITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 114/334 (34%), Gaps = 63/334 (18%)
Query: 374 KIEDTGVYTCRATNKWG---QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFE 430
K +D G Y C ATN +G E + ++ F + +S ++ G
Sbjct: 71 KTQDAGTYQCIATNSFGTIVSREAKLQFAYLE-------NFKTRTRSTVSVRRGQGMVLL 123
Query: 431 CTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNNX 490
C P + EL W N P + NR + + G + IA V+ D G Y C N
Sbjct: 124 CG-PPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLY--IAKVEKSDVGNYTCVVTNTV 180
Query: 491 XXXXXX-----------XXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRID 539
++ ++ + + + V +C +P I
Sbjct: 181 TNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA--LGNPVPTIL 238
Query: 540 W-FFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKV---- 594
W +G+P A +R L++ D+G Y C A N G + K ++
Sbjct: 239 WRRADGKPIARKARRHKSNGI----LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA 294
Query: 595 ------ICKVLTVIVE------------------WFYNGKKLPHGHRYRTFHDFGIVILD 630
I + V +E W NG L R + L+
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLN 350
Query: 631 ILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 664
I ++G+Y+C A NK+G + A L +++
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 135/411 (32%), Gaps = 113/411 (27%)
Query: 438 DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYV-----QSHDSGEYVCRAWNN--X 490
+P+ + W NG V + DF + V+D + + ++ D+G Y C A N+
Sbjct: 35 NPKPHIRWKLNG------TDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGT 88
Query: 491 XXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATG 550
+ + ++ + V + C P S + W FN P
Sbjct: 89 IVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSG-ELSYAWIFNEYPSYQD 147
Query: 551 SRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVIC-------------- 596
+R + G +L + V D G Y C TN +T KV+
Sbjct: 148 NRRFVSQETG--NLYIAKVEKSDVGNYTCVVTN----TVTNHKVLGPPTPLILRNDGVMG 201
Query: 597 -----------------KVLTVIVEWFYNGKKLPH-----------GHRYRTFHDFGIVI 628
K TV +E F G +P + R GI
Sbjct: 202 EYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI-- 259
Query: 629 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEGMEGGLEKIQTLE 688
L+I +E++G YEC A N G +V K L ++ N + Q+ + +E+ E
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV---QIINDIHVAMEESVFWE 316
Query: 689 DAAHLRRTETADIEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGK 748
A+ R PK W NG
Sbjct: 317 CKANGR------------------------------------------PKPTYRWLKNGD 334
Query: 749 PMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKV 799
P+ T R R + G L I+ V D G Y C A N +G +SA + V
Sbjct: 335 PLLT--RDRIQIEQG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEA 61
E + +P I W NG + +G R + G + ++ N + D+ Y C ATN G
Sbjct: 31 EVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLIN-NPNKTQDAGTYQCIATNSFGTI 89
Query: 62 VS 63
VS
Sbjct: 90 VS 91
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 518 EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVY-----AR 572
E KV C E K +P I W NG G DF + +D + +
Sbjct: 22 EEKKVKLSC--EVKGNPKPHIRWKLNGTDVDIG------MDFRYSVVDGSLLINNPNKTQ 73
Query: 573 DSGEYICRATNKWGTAMTK 591
D+G Y C ATN +GT +++
Sbjct: 74 DAGTYQCIATNSFGTIVSR 92
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 1636 PAKPPVFTKKIQPCRAF-----EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 1690
P PVF + +P E+ + + E G+P P I+W + DF+ ++
Sbjct: 2 PGSGPVFVQ--EPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFR-YS 58
Query: 1691 FSTKSILIMRQVFMEDSGVFAVIAENRGG 1719
S+LI +D+G + IA N G
Sbjct: 59 VVDGSLLINNPNKTQDAGTYQCIATNSFG 87
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 106 FDSPVFISHLNDVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNG 165
+ P ++ +ND+ E+V ++C+ P+ W NG
Sbjct: 293 YAQPNWVQIINDIHVAMEESVFWECKAN-------------------GRPKPTYRWLKNG 333
Query: 166 KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 200
P+ ++R+++ ++I V D+G Y C
Sbjct: 334 DPLLTRDRIQIEQG----TLNITIVNLSDAGMYQC 364
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCT 66
P W KNG PL RI+ + G TL+I + D+ +Y C A N G S+
Sbjct: 323 PKPTYRWLKNGDPLLTRDRIQ--IEQG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAE 378
Query: 67 LKI 69
L +
Sbjct: 379 LSV 381
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 85/234 (36%), Gaps = 61/234 (26%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI--NDFGFV 974
P F TP D T +A F C+ T DP + W GK +S R + I +D
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQAT--GDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGS 63
Query: 975 ILEINDVYL-RDSGLYTCKATNKHGEATTSCKLTV-------KGRQGIDVEPQVSAIFAN 1026
+L I + RD +Y C A+N GE + S +LTV +G ID+ PQ+ +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 1027 ATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM 1086
T + L P+P
Sbjct: 124 RTATM------------LCAASGNPDP--------------------------------- 138
Query: 1087 RIDWFFNGRPFATGS---RVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT 1137
I WF + P T + R+K + +L ++ D G+Y C ATN GT
Sbjct: 139 EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT 192
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 16/193 (8%)
Query: 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 1698
PP FT+ A F + GDP P I W ++ + S+ F++ F S +
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSV 64
Query: 1699 MRQVFME---DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 1755
+R + D ++ +A N G+ S L V + Q RG P+ V+
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGF---PTIDMGPQLKVVE 121
Query: 1756 VGQLARFDAKISATKPLDVYWLKNGKKIIP------DIRYKTLEEDNLFTLLIIEAVVED 1809
+ A S ++ W K+ +P + R K L +++ L I ++ D
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKD---FLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 1810 SGAYECVAMNNAG 1822
G YECVA N+AG
Sbjct: 179 QGKYECVATNSAG 191
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 1739 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE-EDNL 1797
G PP F T G +A F + + + W K GKK+ + R++ +E +D
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGS 61
Query: 1798 FTLLIIEAVV--EDSGAYECVAMNNAGEARCEAELVV 1832
++L I+ + D YECVA NN GE L V
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTV 98
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 73/201 (36%), Gaps = 53/201 (26%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVT-LSINSLRA-DDSAIYTCKATNLLGEAV 62
DP KI W K G +S FD G + L I LR D AIY C A+N +GE
Sbjct: 32 GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE-- 89
Query: 63 STCTLKIEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKE 122
+ + R +L + P P I+ P+L
Sbjct: 90 ----ISVSTRLTVLREDQIPRGFPTID----------MGPQLKV---------------- 119
Query: 123 NENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKN---RVKMVSD 179
VE ++ ATM LC + DPE + WF + P+ N R+K +
Sbjct: 120 ---------VERTRTATM-----LCAASGNPDPE--ITWFKDFLPVDTSNNNGRIKQLRS 163
Query: 180 FGFVVMDIAYVQSHDSGEYVC 200
+ I + D G+Y C
Sbjct: 164 ESIGALQIEQSEESDQGKYEC 184
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 74/196 (37%), Gaps = 29/196 (14%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNE------------IVRK 1610
P F P Q G A F + TG PRP+++W G + N+ V +
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 1611 ITATETTEME---------HKGKI----QERVVDASEKPAKPPVFTKKIQPCRAFEQDQA 1657
I T E + G+I + V+ + P P Q A
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126
Query: 1658 RFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSI--LIMRQVFMEDSGVFAVIA 1714
G+P P I WF++ P+ TS+ + +I ++SI L + Q D G + +A
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVA 186
Query: 1715 ENRGG-KAKCSANLVV 1729
N G + ANL V
Sbjct: 187 TNSAGTRYSAPANLYV 202
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 734 TDDPKLKVEWFWNGKPMKTGSRFRT--FCDFGFVILEISPVY-PEDCGQYSCRAYNDYGE 790
T DP+ K+ W GK + + RF F D +L I P+ P D Y C A N+ GE
Sbjct: 31 TGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE 89
Query: 791 AVTSASMKVQGKRSIILESQLPKGM 815
+ V + +++ E Q+P+G
Sbjct: 90 ------ISVSTRLTVLREDQIPRGF 108
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 377 DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK---SLEGLKDGDSAHFECTL 433
D +Y C A+N G+ +S L + + Q P+ I L+ ++ +A C
Sbjct: 75 DEAIYECVASNNVGEISVSTRLTVLRED--QIPRGFPTIDMGPQLKVVERTRTATMLCAA 132
Query: 434 TPVNDPELKVEWFHNGKPIFHKN---RVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNN 489
+ DPE + WF + P+ N R+K + + I + D G+Y C A N+
Sbjct: 133 SGNPDPE--ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNS 189
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 1424 PPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPI-YD--F 1480
PPRF T+ V F CQ GDP K+ W GK + ++ RF I +D
Sbjct: 6 PPRF-TRTPVDQTGVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQ-RFEVIEFDDGS 61
Query: 1481 GYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIE 1537
G V P D Y C A+N G + + + ++ E Q+P+G +I+
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGE------ISVSTRLTVLREDQIPRGFPTID 112
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 274 DSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQ-HLSNLSEGEIAHFEASL 332
D IY A+N+ G + S L L + +P + Q + + AS
Sbjct: 75 DEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASG 134
Query: 333 IPVGDQTMTVEFLYNGKPIEASH---RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 389
P + T +FL P++ S+ RI+ + + + L+I ++ D G Y C ATN
Sbjct: 135 NPDPEITWFKDFL----PVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSA 190
Query: 390 G 390
G
Sbjct: 191 G 191
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken
Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI--NDFGFV 974
P F+ P D +A F C+ T DP V W GK +++ R +TI ++
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNS-QRFETIEFDESAGA 63
Query: 975 ILEINDVYL-RDSGLYTCKATNKHGEATTSCKLTV-------KGRQGIDVEPQVSAI 1023
+L I + RD +Y C A N HGE T KLTV G ID+ PQ+ +
Sbjct: 64 VLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVV 120
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 13/190 (6%)
Query: 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 1698
PPVF KK A F + GDP P + W ++ + S F+ F + +
Sbjct: 6 PPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAV 64
Query: 1699 MRQVFME---DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVIN 1755
+R + D ++ +A+N G+ A L V + Q +PP F +
Sbjct: 65 LRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQ------LPPGFPNIDMGPQLK 118
Query: 1756 VGQLARFDAKI---SATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGA 1812
V + R + S ++ W K+ + P +++ L I + D G
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGK 178
Query: 1813 YECVAMNNAG 1822
YECVA N+AG
Sbjct: 179 YECVASNSAG 188
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 734 TDDPKLKVEWFWNGKPMKTGSRFRT--FCDFGFVILEISPVY-PEDCGQYSCRAYNDYGE 790
T DPK +V W GK + + RF T F + +L I P+ P D Y C A N +GE
Sbjct: 31 TGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQNPHGE 89
Query: 791 AVTSASMKVQGKRSIILESQLPKGM 815
+ V K +++ E QLP G
Sbjct: 90 ------VTVHAKLTVLREDQLPPGF 108
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 1739 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE-EDNL 1797
G PP F+ + G +A F + + V W K GKK+ R++T+E +++
Sbjct: 3 GESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESA 61
Query: 1798 FTLLIIEAV--VEDSGAYECVAMNNAGEARCEAELVV 1832
+L I+ + D YECVA N GE A+L V
Sbjct: 62 GAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTV 98
Score = 33.9 bits (76), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
PVF+ +P Q G A F + TG P+PRV W G +
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV 47
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 120/306 (39%), Gaps = 43/306 (14%)
Query: 1557 EKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNE---------- 1606
E +E P F+ +P+ Q G A F + TG P+PRV W G + ++
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 1607 --IVRKITATETTEMEH------KGKIQERVVDAS-------EKPAKPPVFTKKIQPCRA 1651
V +I T E+ + + E V A + P+ P Q
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 1652 FEQDQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSILIMRQVFMEDSGVF 1710
A G+P P I WF++ P+ S+ + +I + ++ I D G +
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI-ESSEETDQGKY 179
Query: 1711 AVIAENRGG-KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT 1769
+A N G + ANL V + R ++P +S ++ G + + +
Sbjct: 180 ECVATNSAGVRYSSPANLYVRVQNVAPRFSILP------MSHEIMPGGNVNITCVAVGSP 233
Query: 1770 KPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAV-VEDSGAYECVAMNNAGEARCEA 1828
P V W++ + + P E+D ++E V+DS Y CVAM++ G A
Sbjct: 234 MPY-VKWMQGAEDLTP-------EDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVA 285
Query: 1829 ELVVQS 1834
++ V+S
Sbjct: 286 QITVKS 291
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI--NDFGFV 974
P F+ P D +A F C+ T DP V W GK +++ R +TI ++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNS-QRFETIEFDESAGA 63
Query: 975 ILEINDVYL-RDSGLYTCKATNKHGEATTSCKLTV-------KGRQGIDVEPQVSAI 1023
+L I + RD +Y C A N GE T KLTV G ID+ PQ+ +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 734 TDDPKLKVEWFWNGKPMKTGSRFRT--FCDFGFVILEISPVY-PEDCGQYSCRAYNDYGE 790
T DPK +V W GK + + RF T F + +L I P+ P D Y C A N GE
Sbjct: 31 TGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGE 89
Query: 791 AVTSASMKVQGKRSIILESQLPKG 814
+ V K +++ E QLP G
Sbjct: 90 ------ITVHAKLTVLREDQLPSG 107
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 407 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDF 464
+PP+F K G+ G A F C T DP+ +V W GK + + ++
Sbjct: 5 EPPRFIKEPKDQIGV-SGGVASFVCQAT--GDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 465 GFVVMDIAYVQSHDSGEYVCRAWNNXXXXXX-XXXXXXHQIRLPSPSQDNLDVPEAGKVH 523
G V+ D Y C A N+ + +LPS N+D+ KV
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS-GFPNIDMGPQLKVV 120
Query: 524 FDCR-----LEPKSDPTMRIDWFFNGRPF---ATGSRVKTVYDFGFISLDMDYVYARDSG 575
R +P I WF + P A+ R+K + +L ++ D G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQG 177
Query: 576 EYICRATNKWG 586
+Y C ATN G
Sbjct: 178 KYECVATNSAG 188
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 25/222 (11%)
Query: 274 DSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQ-HLSNLSEGEIAHFEASL 332
D +Y A NS G T L L + +P + Q + + AS
Sbjct: 75 DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASG 134
Query: 333 IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG-- 390
P + T +FL P++ S + L+I ++ D G Y C ATN G
Sbjct: 135 NPDPEITWFKDFL----PVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVR 190
Query: 391 ---QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 447
A + V ++ V P+F+ S E + G + T V P V+W
Sbjct: 191 YSSPANLYVRVQNVA------PRFSILPMSHEIMPGG---NVNITCVAVGSPMPYVKWMQ 241
Query: 448 NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNN 489
+ + ++ + + G V+++ V+ DS Y C A ++
Sbjct: 242 GAEDLTPEDDMPV----GRNVLELTDVK--DSANYTCVAMSS 277
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%)
Query: 946 PSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCK 1005
P+ V+W+HNG L S+I N G + LEI D + DSG Y TN GEA+
Sbjct: 36 PTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYAT 95
Query: 1006 LTVKG 1010
L V G
Sbjct: 96 LDVTG 100
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
++ P +++W+ NGV L S+I T G++TL I DDS Y TN GEA
Sbjct: 33 QSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASD 92
Query: 64 TCTLKI 69
TL +
Sbjct: 93 YATLDV 98
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLI 1802
P + S + GQ RF + + +V W NG ++ + + TL I
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEI 68
Query: 1803 IEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
++ +DSG Y V N GEA A L V
Sbjct: 69 LDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 722 GENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYS 781
G+N F L P +V+W+ NG ++ S+ G + LEI + +D G Y
Sbjct: 23 GQNTRF--ILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYR 80
Query: 782 CRAYNDYGEAVTSASMKVQG 801
N GEA A++ V G
Sbjct: 81 AVCTNYKGEASDYATLDVTG 100
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 240 EWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
+W+ N L +K T+ G + L+I+ + +DSG Y TN KG A+ TL
Sbjct: 41 KWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 600 TVIVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
T V+W++NG +L + + G++ L+IL C+ ++SG Y TN G A+L
Sbjct: 37 TAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 339 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 398
T V++ +NG ++ S +I + G++ LEIL +D+G Y TN G+A L
Sbjct: 37 TAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
Query: 399 E 399
+
Sbjct: 97 D 97
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 528 LEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT 587
L +S PT + W+ NG S++ G ++L++ + DSG Y TN G
Sbjct: 30 LNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGE 89
Query: 588 AMTKAKV 594
A A +
Sbjct: 90 ASDYATL 96
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 1078 LEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT 1137
L +S PT + W+ NG S++ G ++L++ + DSG Y TN G
Sbjct: 30 LNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGE 89
Query: 1138 AMTKAKV 1144
A A +
Sbjct: 90 ASDYATL 96
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 1699
P T +++ R RF + P +KW+ + S +IH +T +L +
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS--KIHYTNTSGVLTL 66
Query: 1700 R--QVFMEDSGVFAVIAENRGGKAKCSANLVV 1729
+DSG + + N G+A A L V
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 439 PELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY--VCRAW 487
P +V+W+HNG + +++ + G + ++I + DSG Y VC +
Sbjct: 36 PTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNY 86
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 155 PELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY--VC 200
P +V+W+HNG + +++ + G + ++I + DSG Y VC
Sbjct: 36 PTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVC 83
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 1423 QPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGY 1482
PR ++++ ++ Q+T+F L P +V+W+ NG L ++ + G
Sbjct: 7 HAPRITLRMRSH-RVPCGQNTRF--ILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 1483 VAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTG 1519
+ + + +DSG Y TN G A L TG
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLI 1802
P + +G+ A+ +I D+ W + GK++I +YK + TL +
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 1803 IEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
+ ED G Y C+A N GE ++L++Q+
Sbjct: 68 MTEEQEDEGVYTCIATNEVGEVETSSKLLLQA 99
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 10/177 (5%)
Query: 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 1696
+ P K+++ + A+ + G PLP IKW+R + S +++ +
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 1697 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAV-IN 1755
L + ED GV+ IA N G+ + S+ L+++ Q G + + + S + ++
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 1756 VGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGA 1812
V + R P+ +G+K++ + T+E +T L+++ V + A
Sbjct: 125 VMYIGR---------PVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHA 172
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGF 973
G+AP D+T A C++ P ++W+ GK L + K +D
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIV--GRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 974 VILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
L + D G+YTC ATN+ GE TS KL ++
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 406 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 465
G+ P +K + K G++A C + V P ++W+ GK + + KM SD
Sbjct: 5 GEAPGIRKEMKDVT-TKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGR 61
Query: 466 FVVMDIAYVQSHDSGEYVCRAWN 488
+ + + D G Y C A N
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATN 84
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 581 ATNKWGTAMTKAKVICKVLTVI---VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
T K G A A++ C+++ ++W+ GK+L +Y+ D L ++ +E
Sbjct: 17 VTTKLGEA---AQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQE 73
Query: 638 NSGVYECRATNKYGSDVTKASL 659
+ GVY C ATN+ G T + L
Sbjct: 74 DEGVYTCIATNEVGEVETSSKL 95
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 11 IEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCTLKIE 70
I+W++ G L + + + D TL++ + +D +YTC ATN +GE ++ L ++
Sbjct: 39 IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 12/171 (7%)
Query: 236 VPFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
+P +W+ K L K+K + D L ++ ED G+YT ATN G TS L
Sbjct: 36 LPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95
Query: 296 KCLERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 355
+ YPL + + + ++ +G + + + K ++ S
Sbjct: 96 LLQATPQFHPGYPLKEKYYGAVGST-------LRLHVMYIGRPVPAMTWFHGQKLLQNSE 148
Query: 356 RI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 403
I T H +V+ + + G Y + +N +G + +++E DK
Sbjct: 149 NITIENTEHYTHLVMKNV--QRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 722 GENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYS 781
GE A ++ P +K W+ GK + +++ D L + ED G Y+
Sbjct: 22 GEAAQLSCQIVGRPLPDIK--WYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 782 CRAYNDYGEAVTSASMKVQ 800
C A N+ GE TS+ + +Q
Sbjct: 80 CIATNEVGEVETSSKLLLQ 98
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 136 KDATMKIG---KLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQS 192
KD T K+G +L C + V P ++W+ GK + + KM SD + + +
Sbjct: 15 KDVTTKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ 72
Query: 193 HDSGEYVC 200
D G Y C
Sbjct: 73 EDEGVYTC 80
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLC 1500
++ + CQ+ VG P ++W+ GK L ++ D + ED G Y C
Sbjct: 23 EAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC 80
Query: 1501 RATNLYGMDETRAILKTTGKP 1521
ATN G ET + L P
Sbjct: 81 IATNEVGEVETSSKLLLQATP 101
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 368 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 427
L ++ + ED GVYTC ATN+ G+ E S L P+F E +
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL-----QATPQFHPGYPLKEKYYGAVGS 119
Query: 428 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM--VSDFGFVVMDIAYVQSHDSGEYVCR 485
+ + P + WFH K + + + + + +VM ++H +G+Y +
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTH-AGKYKVQ 178
Query: 486 AWN 488
N
Sbjct: 179 LSN 181
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1853 EAPTVAEPLKDQNVKEGSAVTLKCRITGKP 1882
EAP + + +KD K G A L C+I G+P
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRP 35
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 23/193 (11%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 1711
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 1712 VIAENRGGKAKCSANL-VVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK 1770
+ EN G + +L VVE R P+ +T+ VG F K+ +
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV------VGGDVEFVCKVYSDA 146
Query: 1771 PLDVYWLK----NGKKIIPD-------IRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819
+ W+K NG K PD +++ + N L + D+G Y C N
Sbjct: 147 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Query: 1820 NAGEARCEAELVV 1832
G+A A L V
Sbjct: 207 YIGQANQSAWLTV 219
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 334 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 42 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 97
Query: 388 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 447
++G + +L+ V++S+ +P + + GD F C + +D + ++W
Sbjct: 98 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGD-VEFVCKV--YSDAQPHIQWIK 154
Query: 448 -----------NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 488
+G P + ++ V+ + V D+GEY+C+ N
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 1066 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 1124
VP A V F C PTMR W NG+ F R+ SL M+ V D
Sbjct: 31 VPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 1125 GEYICRATNKWGTA--MTKAKVICKAKHDIVTESQLPDSMS 1163
G Y C N++G+ V+ +++H + ++ LP + S
Sbjct: 89 GNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAS 129
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 75/218 (34%), Gaps = 56/218 (25%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T+ W NGK RI K N +I+E V D G YTC N
Sbjct: 40 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 97
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
++G N T ++ +E + +R P+
Sbjct: 98 EYGS-------------------------INHTYHLDVVERSRHR-------------PI 119
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDF 1109
+ L N G V F C++ SD I W NG + +K +
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 1110 GFIS-----LDMDYVYARDSGEYICRATNKWGTAMTKA 1142
G S L + V D+GEYIC+ +N G A A
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSA 215
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 1411 LTEDDLYE-PEKKQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGK 1466
+ ED + E K+ P + K + +L + + KF C G+P + W NGK
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGK 58
Query: 1467 PLPHKNRFNPIYDFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
++R GY N W V P D G Y C N YG
Sbjct: 59 EFKQEHRIG-----GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 100
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 71/196 (36%), Gaps = 25/196 (12%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + ++ F C +P + W NGK ++R+ K+ + ++M+
Sbjct: 26 KRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME-- 81
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N N H+ L + N G V F C+
Sbjct: 82 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK 141
Query: 528 LEPKSDPTMRIDWFF----NGRPFATGS--RVKTVYDFGFIS-----LDMDYVYARDSGE 576
+ SD I W NG + +K + G S L + V D+GE
Sbjct: 142 V--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGE 199
Query: 577 YICRATNKWGTAMTKA 592
YIC+ +N G A A
Sbjct: 200 YICKVSNYIGQANQSA 215
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 730 RLTPTDDPKLKVEWFWNGKPMKTGSR---FRTFCDFGFVILEISPVYPEDCGQYSCRAYN 786
R +P + W NGK K R ++ +I+E V P D G Y+C N
Sbjct: 40 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 97
Query: 787 DYGEAVTSASMKV--QGKRSIILESQLPKGMEVFIS 820
+YG + + V + + IL++ LP +
Sbjct: 98 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVG 133
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 968 INDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQ 1012
IN +L + +V D+G Y CK +N G+A S LTV +Q
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 29/206 (14%)
Query: 1644 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMR 1700
K++ AF + +F G+P+PT++W + + +I + ++ LIM
Sbjct: 26 KRLHAVPAF--NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIME 81
Query: 1701 QVFMEDSGVFAVIAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVG 1757
V D G + + EN G + +L V E+ R + G+ P+ +T+ VG
Sbjct: 82 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGL--PANASTV------VG 133
Query: 1758 QLARFDAKISATKPLDVYWLK----NGKKIIPD-------IRYKTLEEDNLFTLLIIEAV 1806
F K+ + + W+K NG K PD +++ + N L +
Sbjct: 134 GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 193
Query: 1807 VEDSGAYECVAMNNAGEARCEAELVV 1832
D+G Y C N G+A A L V
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWLTV 219
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 72/218 (33%), Gaps = 56/218 (25%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T+ W NGK RI K N +I+E V D G YTC N
Sbjct: 40 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 97
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
++G + L V E P+ P+
Sbjct: 98 EYGSINHTYHLDVV--------------------------------------ERSPHRPI 119
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDF 1109
+ L N G V F C++ SD I W NG + +K +
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 1110 GFIS-----LDMDYVYARDSGEYICRATNKWGTAMTKA 1142
G S L + V D+GEYIC+ +N G A A
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSA 215
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 24/172 (13%)
Query: 334 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 42 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 97
Query: 388 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 447
++G + +L+ V++S +P + + GD F C + +D + ++W
Sbjct: 98 EYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGD-VEFVCKV--YSDAQPHIQWIK 154
Query: 448 -----------NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 488
+G P + ++ V+ + V D+GEY+C+ N
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 1066 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 1124
VP V F C PTMR W NG+ F R+ SL M+ V D
Sbjct: 31 VPAFNTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 1125 GEYICRATNKWGTA--MTKAKVICKAKHDIVTESQLPDSMS 1163
G Y C N++G+ V+ ++ H + ++ LP + S
Sbjct: 89 GNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAS 129
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 1411 LTEDDLYE-PEKKQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGK 1466
+ ED + E K+ P + K + +L + + KF C G+P + W NGK
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAFNTVKFRCPAG--GNPMPTMRWLKNGK 58
Query: 1467 PLPHKNRFNPIYDFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
++R GY N W V P D G Y C N YG
Sbjct: 59 EFKQEHRIG-----GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 100
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 71/196 (36%), Gaps = 25/196 (12%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + ++ F C +P + W NGK ++R+ K+ + ++M+
Sbjct: 26 KRLHAVPAFNTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME-- 81
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N N H+ L + N G V F C+
Sbjct: 82 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCK 141
Query: 528 LEPKSDPTMRIDWFF----NGRPFATGS--RVKTVYDFGFIS-----LDMDYVYARDSGE 576
+ SD I W NG + +K + G S L + V D+GE
Sbjct: 142 V--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGE 199
Query: 577 YICRATNKWGTAMTKA 592
YIC+ +N G A A
Sbjct: 200 YICKVSNYIGQANQSA 215
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 968 INDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQ 1012
IN +L + +V D+G Y CK +N G+A S LTV +Q
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 1739 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKII-PDIRYKTLEEDNL 1797
G PP + + + VG +A F P + W KNGKK+ RY LE+
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 1798 FTLLIIEAVV--EDSGAYECVAMNNAGEA 1824
++L IE V D YECVA N G+A
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDA 91
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 77/203 (37%), Gaps = 18/203 (8%)
Query: 1634 EKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 1693
E A PP +K Q A F GDP P+I W + ++ +
Sbjct: 1 ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 1694 KSILIMRQVFME---DSGVFAVIAENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTI 1749
I I+R + D + +AEN G A A L + E G P F
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYE------GDKTPAGFPVIT 114
Query: 1750 ---SSAVINVGQLARFDAKISATKPLDVYWLKNGKKI-IPDIRYKTLEEDNLFTLLIIEA 1805
+ VI VG K ++YW+KN K+ + + RY +D L I +
Sbjct: 115 QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL--KDGF--LQIENS 170
Query: 1806 VVEDSGAYECVAMNNAGEARCEA 1828
ED G YECVA N+ G +A
Sbjct: 171 REEDQGKYECVAENSMGTEHSKA 193
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRSTF---DFGLVTLSINSLRAD-DSAIYTCKATNLLG 59
R DP I W KNG +S G++ R T G+ L I +RA D A Y C A N +G
Sbjct: 31 RGDPPPSIVWRKNGKKVS-GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG 89
Query: 60 EAVST-CTLKI 69
+AVS TL I
Sbjct: 90 DAVSADATLTI 100
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 77/211 (36%), Gaps = 51/211 (24%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATET--TEME 1620
P + +P+ Q V+ G A F G P P ++W NG +K++ T++ T +E
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNG--------KKVSGTQSRYTVLE 58
Query: 1621 HKGKI---------------------QERVVDA------------SEKPAKPPVFTKKIQ 1647
G I + V DA + PA PV T+
Sbjct: 59 QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPG 118
Query: 1648 PCRAFEQDQARF-EVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSILIMRQVFME 1705
R E + G+P P I W + + S+P + + L + E
Sbjct: 119 -TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK----DGFLQIENSREE 173
Query: 1706 DSGVFAVIAENRGGKAKCSA-NLVVEEKRQG 1735
D G + +AEN G A NL V+ +R G
Sbjct: 174 DQGKYECVAENSMGTEHSKATNLYVKVRRVG 204
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 1327 VIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKAT 1370
V S+P + L L I+ EDQG+Y C A N G +KAT
Sbjct: 151 VDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKAT 194
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 1742 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKII-PDIRYKTLEEDNLFTL 1800
PP + + + VG +A F P + W KNGKK+ RY LE+ ++
Sbjct: 8 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 67
Query: 1801 LIIEAV--VEDSGAYECVAMNNAGEA 1824
L IE V D YECVA N G+A
Sbjct: 68 LRIEPVRAGRDDAPYECVAENGVGDA 93
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 76/197 (38%), Gaps = 12/197 (6%)
Query: 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI 1696
A PP +K Q A F GDP P+I W + ++ + I
Sbjct: 6 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 65
Query: 1697 LIMRQVFME---DSGVFAVIAENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSA 1752
I+R + D + +AEN G A A L + E + G P +
Sbjct: 66 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF---PVITQGPGTR 122
Query: 1753 VINVGQLARFDAKISATKPLDVYWLKNGKKI-IPDIRYKTLEEDNLFTLLIIEAVVEDSG 1811
VI VG K ++YW+KN K+ + + RY +D L I + ED G
Sbjct: 123 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL--KDGF--LQIENSREEDQG 178
Query: 1812 AYECVAMNNAGEARCEA 1828
YECVA N+ G +A
Sbjct: 179 KYECVAENSMGTEHSKA 195
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRSTF---DFGLVTLSINSLRAD-DSAIYTCKATNLLG 59
R DP I W KNG +S G++ R T G+ L I +RA D A Y C A N +G
Sbjct: 33 RGDPPPSIVWRKNGKKVS-GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG 91
Query: 60 EAVST-CTLKI 69
+AVS TL I
Sbjct: 92 DAVSADATLTI 102
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 81/221 (36%), Gaps = 58/221 (26%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATET--TEME 1620
P + +P+ Q V+ G A F G P P ++W NG +K++ T++ T +E
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNG--------KKVSGTQSRYTVLE 60
Query: 1621 HKGKI---------------------QERVVDA------------SEKPAKPPVFTKKIQ 1647
G I + V DA + PA PV T+
Sbjct: 61 QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPG 120
Query: 1648 PCRAFEQDQARF-EVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSILIMRQVFME 1705
R E + G+P P I W + + S+P + + L + E
Sbjct: 121 -TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK----DGFLQIENSREE 175
Query: 1706 DSGVFAVIAENRGGKAKCSA-NLVVEEKRQGGRGGVVPPSF 1745
D G + +AEN G A NL V+ +R VPP+F
Sbjct: 176 DQGKYECVAENSMGTEHSKATNLYVKVRR-------VPPTF 209
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1327 VIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKAT---ISCKKIP 1377
V S+P + L L I+ EDQG+Y C A N G +KAT + +++P
Sbjct: 153 VDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVP 206
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And
Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH-NGKALSAGS---RIKTINDF 971
AP + PTDL + E A +CR T +V W NG ++ GS RI ++D
Sbjct: 312 APVIVEPPTDLNVTEGMAAELKCR---TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDG 368
Query: 972 GFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
L +V ++D+G YTC TN G T S L V
Sbjct: 369 ---TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 706 APVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFW-NGKPMKTGSRFRTFCDFGF 764
APV P ++++ + EG A + R T V W NG M GS
Sbjct: 312 APVIVEPPTDLN-VTEGMAAELKCR---TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHD 367
Query: 765 VILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGK 802
L + V +D GQY+C N G SA++ V K
Sbjct: 368 GTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGTK 405
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 1404 KYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFL 1463
+Y E+ + Y P +PP T + E + + +C+ G V W
Sbjct: 298 RYIGELDQSHFTCYAPVIVEPP-------TDLNVTEGMAAELKCR---TGTSMTSVNWLT 347
Query: 1464 -NGKPLPH---KNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTG 1519
NG + H + R + ++D +NF V +D+G+Y C TN G A L
Sbjct: 348 PNGTLMTHGSYRVRISVLHDG---TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGT 404
Query: 1520 K 1520
K
Sbjct: 405 K 405
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 1854 APTVAEPLKDQNVKEGSAVTLKCR 1877
AP + EP D NV EG A LKCR
Sbjct: 312 APVIVEPPTDLNVTEGMAAELKCR 335
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 25/195 (12%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 1711
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 25 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 82
Query: 1712 VIAENRGGKAKCSANL-VVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK 1770
+ EN G + +L VVE R P+ +T+ VG F K+ +
Sbjct: 83 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV------VGGDVEFVCKVYSDA 136
Query: 1771 PLDVYWLK----NGKKIIPD-IRY-KTLEEDNLFT-------LLIIEAVVEDSGAYECVA 1817
+ W+K NG K PD + Y K L+ + T L I ED+G Y C+A
Sbjct: 137 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 196
Query: 1818 MNNAGEARCEAELVV 1832
N+ G + A L V
Sbjct: 197 GNSIGISFHSAWLTV 211
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 1057 TSQLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISL 1114
T +++ L VP A V F C PTMR W NG+ F R+ SL
Sbjct: 11 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSL 68
Query: 1115 DMDYVYARDSGEYICRATNKWGTA--MTKAKVICKAKHDIVTESQLPDSMS 1163
M+ V D G Y C N++G+ V+ +++H + ++ LP + S
Sbjct: 69 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAS 119
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 26/175 (14%)
Query: 334 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 32 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 87
Query: 388 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 447
++G + +L+ V++S+ +P + + GD F C + +D + ++W
Sbjct: 88 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGD-VEFVCKV--YSDAQPHIQWIK 144
Query: 448 -----------NGKPIFHKNRVKMV--SDFGFVVMDIAYVQSHDSGEYVCRAWNN 489
+G P + V +D V+ I V D+GEY C A N+
Sbjct: 145 HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 199
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 76/220 (34%), Gaps = 58/220 (26%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T+ W NGK RI K N +I+E V D G YTC N
Sbjct: 30 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 87
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
++G N T ++ +E + +R P+
Sbjct: 88 EYGS-------------------------INHTYHLDVVERSRHR-------------PI 109
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDF 1109
+ L N G V F C++ + P I W NG + +K +
Sbjct: 110 LQAGLPANASTVVGGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKAA 167
Query: 1110 GFISLD--MDYVYAR-----DSGEYICRATNKWGTAMTKA 1142
G + D ++ +Y R D+GEY C A N G + A
Sbjct: 168 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 207
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C PTMR W NG+ F R+ SL M+ V D
Sbjct: 21 VPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 78
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 79 GNYTCVVENEYGS 91
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1422 KQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIY 1478
K+ P + K + +L + + KF C G+P + W NGK ++R
Sbjct: 3 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIG--- 57
Query: 1479 DFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
GY N W V P D G Y C N YG
Sbjct: 58 --GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 90
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + ++ F C +P + W NGK ++R+ K+ + ++M+
Sbjct: 16 KRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME-- 71
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N N H+ L + N G V F C+
Sbjct: 72 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK 131
Query: 528 LEPKSDPTMRIDWFF----NGRPFATGS--RVKTVYDFGFISLD--MDYVYAR-----DS 574
+ + P I W NG + +K + G + D ++ +Y R D+
Sbjct: 132 VYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 189
Query: 575 GEYICRATNKWGTAMTKA 592
GEY C A N G + A
Sbjct: 190 GEYTCLAGNSIGISFHSA 207
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 730 RLTPTDDPKLKVEWFWNGKPMKTGSR---FRTFCDFGFVILEISPVYPEDCGQYSCRAYN 786
R +P + W NGK K R ++ +I+E V P D G Y+C N
Sbjct: 30 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 87
Query: 787 DYGEAVTSASMKV--QGKRSIILESQLPKGMEVFIS 820
+YG + + V + + IL++ LP +
Sbjct: 88 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVG 123
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 25/195 (12%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 1711
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 84
Query: 1712 VIAENRGGKAKCSANL-VVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK 1770
+ EN G + +L VVE R P+ +T+ VG F K+ +
Sbjct: 85 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV------VGGDVEFVCKVYSDA 138
Query: 1771 PLDVYWLK----NGKKIIPD-IRY-KTLEEDNLFT-------LLIIEAVVEDSGAYECVA 1817
+ W+K NG K PD + Y K L+ + T L I ED+G Y C+A
Sbjct: 139 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 198
Query: 1818 MNNAGEARCEAELVV 1832
N+ G + A L V
Sbjct: 199 GNSIGISFHSAWLTV 213
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 1057 TSQLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISL 1114
T +++ L VP A V F C PTMR W NG+ F R+ SL
Sbjct: 13 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSL 70
Query: 1115 DMDYVYARDSGEYICRATNKWGTA--MTKAKVICKAKHDIVTESQLPDSMS 1163
M+ V D G Y C N++G+ V+ +++H + ++ LP + S
Sbjct: 71 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAS 121
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 26/175 (14%)
Query: 334 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 34 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 89
Query: 388 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 447
++G + +L+ V++S+ +P + + GD F C + +D + ++W
Sbjct: 90 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGD-VEFVCKV--YSDAQPHIQWIK 146
Query: 448 -----------NGKPIFHKNRVKMV--SDFGFVVMDIAYVQSHDSGEYVCRAWNN 489
+G P + V +D V+ I V D+GEY C A N+
Sbjct: 147 HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 201
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 76/220 (34%), Gaps = 58/220 (26%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T+ W NGK RI K N +I+E V D G YTC N
Sbjct: 32 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 89
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
++G N T ++ +E + +R P+
Sbjct: 90 EYGS-------------------------INHTYHLDVVERSRHR-------------PI 111
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDF 1109
+ L N G V F C++ + P I W NG + +K +
Sbjct: 112 LQAGLPANASTVVGGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 1110 GFISLD--MDYVYAR-----DSGEYICRATNKWGTAMTKA 1142
G + D ++ +Y R D+GEY C A N G + A
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 209
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C PTMR W NG+ F R+ SL M+ V D
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 81 GNYTCVVENEYGS 93
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1422 KQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIY 1478
K+ P + K + +L + + KF C G+P + W NGK ++R
Sbjct: 5 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIG--- 59
Query: 1479 DFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
GY N W V P D G Y C N YG
Sbjct: 60 --GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + ++ F C +P + W NGK ++R+ K+ + ++M+
Sbjct: 18 KRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME-- 73
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N N H+ L + N G V F C+
Sbjct: 74 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK 133
Query: 528 LEPKSDPTMRIDWFF----NGRPFATGS--RVKTVYDFGFISLD--MDYVYAR-----DS 574
+ + P I W NG + +K + G + D ++ +Y R D+
Sbjct: 134 VYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 575 GEYICRATNKWGTAMTKA 592
GEY C A N G + A
Sbjct: 192 GEYTCLAGNSIGISFHSA 209
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 730 RLTPTDDPKLKVEWFWNGKPMKTGSR---FRTFCDFGFVILEISPVYPEDCGQYSCRAYN 786
R +P + W NGK K R ++ +I+E V P D G Y+C N
Sbjct: 32 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 89
Query: 787 DYGEAVTSASMKV--QGKRSIILESQLPKGMEVFIS 820
+YG + + V + + IL++ LP +
Sbjct: 90 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVG 125
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of
The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of
The Receptor Tyrosine Kinase Musk
Length = 192
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 77/198 (38%), Gaps = 25/198 (12%)
Query: 1633 SEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFS 1692
+EK K PV T ++ A ++ A F + P P I W R I D +
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLF-DTRYSIRE 59
Query: 1693 TKSILIMRQVFMEDSGVFAVIAENR-GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS 1751
+L + V D G++ A N GG + L V+ K + R PP
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITR----PP-------- 107
Query: 1752 AVINVGQLARFDAKISAT-----KPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAV 1806
INV + A + T KP V W+K + + R LE +L I
Sbjct: 108 --INVKIIEGLKAVLPCTTMGNPKP-SVSWIKGDSALRENSRIAVLESG---SLRIHNVQ 161
Query: 1807 VEDSGAYECVAMNNAGEA 1824
ED+G Y CVA N+ G A
Sbjct: 162 KEDAGQYRCVAKNSLGTA 179
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 367 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS---HIKSLEGLKD 423
+L IL + D G+Y C A N G A S C PK T ++K +EGLK
Sbjct: 63 LLTILSVEDSDDGIYCCTANNGVGGAVES----CGALQVKMKPKITRPPINVKIIEGLK- 117
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 483
A CT + +P+ V W + +R+ ++ + I VQ D+G+Y
Sbjct: 118 ---AVLPCTT--MGNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDAGQYR 169
Query: 484 CRAWNN 489
C A N+
Sbjct: 170 CVAKNS 175
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 86/235 (36%), Gaps = 58/235 (24%)
Query: 911 EDLGKAPEFLTTPTDLT--LAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI 968
E L KAP +TTP + L E +A F C + P ++ W N + +I
Sbjct: 2 EKLPKAP-VITTPLETVDALVEE-VATFMCAVESYPQPEIS--WTRNKILIKLFDTRYSI 57
Query: 969 NDFG--FVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFAN 1026
+ G IL + D D G+Y C A N G A SC G + ++P+++
Sbjct: 58 RENGQLLTILSVED---SDDGIYCCTANNGVGGAVESC-----GALQVKMKPKIT----- 104
Query: 1027 ATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM 1086
PP+ N+ + E K C +P
Sbjct: 105 -------------------------RPPI-------NVKIIEGLKAVLPCTT--MGNPKP 130
Query: 1087 RIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK 1141
+ W SR+ V + G SL + V D+G+Y C A N GTA +K
Sbjct: 131 SVSWIKGDSALRENSRI-AVLESG--SLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 12/187 (6%)
Query: 407 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 466
+ P T+ +++++ L + + A F C + PE + W N I + + + G
Sbjct: 6 KAPVITTPLETVDALVE-EVATFMCAVESYPQPE--ISWTRNKILIKLFDTRYSIRENGQ 62
Query: 467 VVMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQD--NLDVPEAGKVHF 524
+ + I V+ D G Y C A N +++ P ++ N+ + E K
Sbjct: 63 L-LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK-PKITRPPINVKIIEGLKAVL 120
Query: 525 DCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNK 584
C +P + W SR+ V + G SL + V D+G+Y C A N
Sbjct: 121 PCTT--MGNPKPSVSWIKGDSALRENSRI-AVLESG--SLRIHNVQKEDAGQYRCVAKNS 175
Query: 585 WGTAMTK 591
GTA +K
Sbjct: 176 LGTAYSK 182
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 68/178 (38%), Gaps = 40/178 (22%)
Query: 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGF 764
+APV T PL +D L E E A F + P ++ W N +K + + G
Sbjct: 6 KAPVITTPLETVDALVE-EVATFMCAVESYPQP--EISWTRNKILIKLFDTRYSIRENGQ 62
Query: 765 VILEISPVYPEDCGQYSCRAYNDYGEAVTS-ASMKVQGKRSII-----------LESQLP 812
+L I V D G Y C A N G AV S +++V+ K I L++ LP
Sbjct: 63 -LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLP 121
Query: 813 --------------KGMEVF-----ISFHE-----ISPVYPEDCGQYSCRAYNDYGEA 846
KG I+ E I V ED GQY C A N G A
Sbjct: 122 CTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 701 IEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFC 760
++ + P T P N+ + EG A T +PK V W ++ SR
Sbjct: 95 LQVKMKPKITRPPINVKII-EGLKAVLPC--TTMGNPKPSVSWIKGDSALRENSRIAVL- 150
Query: 761 DFGFVILEISPVYPEDCGQYSCRAYNDYGEA 791
+ G L I V ED GQY C A N G A
Sbjct: 151 ESGS--LRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 51/144 (35%), Gaps = 25/144 (17%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKI-IPDIRYKTLEEDNLFTLL 1801
P T + + V ++A F + + ++ W +N I + D RY E L T+L
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTIL 67
Query: 1802 IIEAVVEDSGAYECVAMNNAGEA--RCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTVAE 1859
+E D G Y C A N G A C A V P +
Sbjct: 68 SVED--SDDGIYCCTANNGVGGAVESCGALQVKMK--------------------PKITR 105
Query: 1860 PLKDQNVKEGSAVTLKCRITGKPR 1883
P + + EG L C G P+
Sbjct: 106 PPINVKIIEGLKAVLPCTTMGNPK 129
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTC 65
P +I W +N + + L S + G + L+I S+ D IY C A N +G AV +C
Sbjct: 35 PQPEISWTRNKILIKLFDTRYSIRENGQL-LTILSVEDSDDGIYCCTANNGVGGAVESC 92
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI--NDFGFV 974
P F+ P D +A F C+ T DP V W GK +++ R +TI ++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNS-QRFETIEFDESAGA 63
Query: 975 ILEINDVYL-RDSGLYTCKATNKHGEATTSCKLTV-------KGRQGIDVEPQVSAI 1023
+L I + RD +Y C A N GE T KLTV G ID+ PQ+ +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 7/188 (3%)
Query: 1638 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 1697
+PP F K+ + A F + GDP P + W ++ + S F+ F +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGA 63
Query: 1698 IMRQVFME---DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 1754
++R + D V+ +A+N G+ A L V + Q G P+ V+
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF---PNIDMGPQLKVV 120
Query: 1755 NVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYE 1814
+ A S ++ W K+ + P +++ L I + D G YE
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 1815 CVAMNNAG 1822
CVA N+AG
Sbjct: 181 CVATNSAG 188
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 734 TDDPKLKVEWFWNGKPMKTGSRFRT--FCDFGFVILEISPVY-PEDCGQYSCRAYNDYGE 790
T DPK +V W GK + + RF T F + +L I P+ P D Y C A N GE
Sbjct: 31 TGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGE 89
Query: 791 AVTSASMKVQGKRSIILESQLPKGM 815
+ V K +++ E QLP G
Sbjct: 90 ------ITVHAKLTVLREDQLPSGF 108
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 1739 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE-EDNL 1797
G PP F+ + G +A F + + V W K GKK+ R++T+E +++
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESA 61
Query: 1798 FTLLIIEAV--VEDSGAYECVAMNNAGEARCEAELVV 1832
+L I+ + D YECVA N+ GE A+L V
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 407 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDF 464
+PP+F K G+ G A F C T DP+ +V W GK + + ++
Sbjct: 5 EPPRFIKEPKDQIGV-SGGVASFVCQAT--GDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 465 GFVVMDIAYVQSHDSGEYVCRAWNNXXXXXX-XXXXXXHQIRLPSPSQDNLDVPEAGKVH 523
G V+ D Y C A N+ + +LPS N+D+ KV
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS-GFPNIDMGPQLKVV 120
Query: 524 FDCR-----LEPKSDPTMRIDWFFNGRPF---ATGSRVKTVYDFGFISLDMDYVYARDSG 575
R +P I WF + P A+ R+K + +L ++ D G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQG 177
Query: 576 EYICRATNKWG 586
+Y C ATN G
Sbjct: 178 KYECVATNSAG 188
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 28/200 (14%)
Query: 1557 EKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNE---------- 1606
E +E P F+ +P+ Q G A F + TG P+PRV W G + ++
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 1607 --IVRKITATETTEMEH------KGKIQERVVDAS-------EKPAKPPVFTKKIQPCRA 1651
V +I T E+ + + E V A + P+ P Q
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 1652 FEQDQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSILIMRQVFMEDSGVF 1710
A G+P P I WF++ P+ S+ + +I + ++ I D G +
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI-ESSEETDQGKY 179
Query: 1711 AVIAENRGG-KAKCSANLVV 1729
+A N G + ANL V
Sbjct: 180 ECVATNSAGVRYSSPANLYV 199
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI--NDFGFV 974
P F+ P D +A F C+ T DP V W GK +++ R +TI ++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNS-QRFETIEFDESAGA 63
Query: 975 ILEINDVYL-RDSGLYTCKATNKHGEATTSCKLTV-------KGRQGIDVEPQVSAI 1023
+L I + RD +Y C A N GE T KLTV G ID+ PQ+ +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 7/188 (3%)
Query: 1638 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 1697
+PP F K+ + A F + GDP P + W ++ + S F+ F +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGA 63
Query: 1698 IMRQVFME---DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 1754
++R + D V+ +A+N G+ A L V + Q G P+ V+
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF---PNIDMGPQLKVV 120
Query: 1755 NVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYE 1814
+ A S ++ W K+ + P +++ L I + D G YE
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 1815 CVAMNNAG 1822
CVA N+AG
Sbjct: 181 CVATNSAG 188
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 734 TDDPKLKVEWFWNGKPMKTGSRFRT--FCDFGFVILEISPVY-PEDCGQYSCRAYNDYGE 790
T DPK +V W GK + + RF T F + +L I P+ P D Y C A N GE
Sbjct: 31 TGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGE 89
Query: 791 AVTSASMKVQGKRSIILESQLPKGM 815
+ V K +++ E QLP G
Sbjct: 90 ------ITVHAKLTVLREDQLPSGF 108
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 1739 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE-EDNL 1797
G PP F+ + G +A F + + V W K GKK+ R++T+E +++
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESA 61
Query: 1798 FTLLIIEAVV--EDSGAYECVAMNNAGEARCEAELVV 1832
+L I+ + D YECVA N+ GE A+L V
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 78/207 (37%), Gaps = 28/207 (13%)
Query: 1557 EKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNE---------- 1606
E +E P F+ +P+ Q G A F + TG P+PRV W G + ++
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 1607 --IVRKITATETTEMEH------KGKIQERVVDAS-------EKPAKPPVFTKKIQPCRA 1651
V +I T E+ + + E V A + P+ P Q
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 1652 FEQDQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSILIMRQVFMEDSGVF 1710
A G+P P I WF++ P+ S+ + +I + ++ I D G +
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI-ESSEETDQGKY 179
Query: 1711 AVIAENRGG-KAKCSANLVVEEKRQGG 1736
+A N G + ANL V +R G
Sbjct: 180 ECVATNSAGVRYSSPANLYVRVRRVAG 206
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 18/191 (9%)
Query: 407 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDF 464
+PP+F K G+ G A F C T DP+ +V W GK + + ++
Sbjct: 5 EPPRFIKEPKDQIGV-SGGVASFVCQAT--GDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 465 GFVVMDIAYVQSHDSGEYVCRAWNNXXXXXX-XXXXXXHQIRLPSPSQDNLDVPEAGKVH 523
G V+ D Y C A N+ + +LPS N+D+ KV
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS-GFPNIDMGPQLKVV 120
Query: 524 FDCR-----LEPKSDPTMRIDWFFNGRPF---ATGSRVKTVYDFGFISLDMDYVYARDSG 575
R +P I WF + P A+ R+K + +L ++ D G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQG 177
Query: 576 EYICRATNKWG 586
+Y C ATN G
Sbjct: 178 KYECVATNSAG 188
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 27/193 (13%)
Query: 1658 RFEVEFDGDPLPTIKWFR--EDFPITSSPDFQIHTFSTKSI---LIMRQVFMEDSGVFAV 1712
+F+ G P PT++W + ++F PD +I + + +IM V D G +
Sbjct: 35 KFKCPSSGTPQPTLRWLKNGKEF----KPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 1713 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL 1772
I EN G + L V E R P ++ + +G F K+ +
Sbjct: 91 IVENEYGSINHTYQLDVVE-----RSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP 145
Query: 1773 DVYWLK----NGKKIIPD-IRYKTL--------EEDNLFTLLIIEAVVEDSGAYECVAMN 1819
+ WLK NG KI PD + Y + + + L + ED+G Y C+A N
Sbjct: 146 HIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGN 205
Query: 1820 NAGEARCEAELVV 1832
+ G + A L V
Sbjct: 206 SIGLSHHSAWLTV 218
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 336 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 392
G T+ +L NGK + HRI + +A ++++ + D G YTC N++G
Sbjct: 42 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVP--SDKGNYTCIVENEYGSI 99
Query: 393 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----N 448
+ L+ V++S + P + + + + + G + F C + +DP+ ++W N
Sbjct: 100 NHTYQLDVVERSPHR-PILQAGLPANKTVALGSNVEFMCKV--YSDPQPHIQWLKHIEVN 156
Query: 449 GKPIFHKN--RVKMVSDFG-------FVVMDIAYVQSHDSGEYVCRAWNN 489
G I N V+++ G V+ + V D+GEY C A N+
Sbjct: 157 GSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 206
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 1047 DEEKPN----PPVFTS--QLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFAT 1099
D KPN P +TS +++ L VP A V F C PT+R W NG+ F
Sbjct: 2 DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLR--WLKNGKEFKP 59
Query: 1100 GSRVKTV-YDFGFISLDMDYVYARDSGEYICRATNKWGTA--MTKAKVICKAKHDIVTES 1156
R+ + S+ MD V D G Y C N++G+ + V+ ++ H + ++
Sbjct: 60 DHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQA 119
Query: 1157 QLP 1159
LP
Sbjct: 120 GLP 122
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C PT+R W NG+ F R+ + S+ MD V D
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLR--WLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDK 85
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 86 GNYTCIVENEYGS 98
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 76/221 (34%), Gaps = 56/221 (25%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN-DFGFVILEINDVYLRDSGLYTCKAT 994
F+C + T P T+ W NGK RI + + ++ V D G YTC
Sbjct: 36 FKCPSSGTPQP--TLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 995 NKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054
N++G + +L V E P+ P
Sbjct: 94 NEYGSINHTYQLDVV--------------------------------------ERSPHRP 115
Query: 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYD 1108
+ + L N V V F C++ SDP I W NG + V+ +
Sbjct: 116 ILQAGLPANKTVALGSNVEFMCKV--YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKT 173
Query: 1109 FGFISLD--MDYVYAR-----DSGEYICRATNKWGTAMTKA 1142
G + D M+ ++ R D+GEY C A N G + A
Sbjct: 174 AGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSA 214
Score = 37.0 bits (84), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + + F+C + P L+ W NGK +R+ K+ ++MD
Sbjct: 23 KKLHAVPAAKTVKFKCPSSGTPQPTLR--WLKNGKEFKPDHRIGGYKVRYATWSIIMD-- 78
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N N H+ L + N V V F C+
Sbjct: 79 SVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCK 138
Query: 528 LEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDFGFISLD--MDYVYAR-----DS 574
+ SDP I W NG + V+ + G + D M+ ++ R D+
Sbjct: 139 V--YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 196
Query: 575 GEYICRATNKWGTAMTKA 592
GEY C A N G + A
Sbjct: 197 GEYTCLAGNSIGLSHHSA 214
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 1753 VINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVV-EDSG 1811
+ + +F S T + WLKNGK+ PD R + +I+++VV D G
Sbjct: 27 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKG 86
Query: 1812 AYECVAMNNAGEARCEAELVV 1832
Y C+ N G +L V
Sbjct: 87 NYTCIVENEYGSINHTYQLDV 107
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 55/174 (31%), Gaps = 56/174 (32%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFG-W------VYPE 1493
++ KF+C + G P + W NGK F P + G + + W V P
Sbjct: 32 KTVKFKCPSS--GTPQPTLRWLKNGK------EFKPDHRIGGYKVRYATWSIIMDSVVPS 83
Query: 1494 DSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQL 1553
D G Y C N YG S HT +
Sbjct: 84 DKGNYTCIVENEYG-------------------------------------SINHTYQLD 106
Query: 1554 VEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWL----INGHTI 1603
V + P + P + V G F +V P+P + WL +NG I
Sbjct: 107 VVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI 160
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 77/220 (35%), Gaps = 44/220 (20%)
Query: 1555 EDEKPKEAPV--FVSQPEAQK-----VQEGEPARFCTRVTGYPRPRVMWLING------H 1601
++ KP PV + + PE + V + +F +G P+P + WL NG H
Sbjct: 2 DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDH 61
Query: 1602 TIVNEIVRKIT---------------ATETTEMEHKGKIQERVVDASEKPAKPPVFTKKI 1646
I VR T T E E+ +D E+ P+ +
Sbjct: 62 RIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGL 121
Query: 1647 QPCRAFE-QDQARFEVEFDGDPLPTIKWFREDFPITSS-------PDFQI-------HTF 1691
+ F + DP P I+W + + S P QI T
Sbjct: 122 PANKTVALGSNVEFMCKVYSDPQPHIQWLKH-IEVNGSKIGPDNLPYVQILKTAGVNTTD 180
Query: 1692 STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 1731
+L +R V ED+G + +A N G + SA L V E
Sbjct: 181 KEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 737 PKLKVEWFWNGKPMKTGSRFRTF-CDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSA 795
P+ + W NGK K R + + + + V P D G Y+C N+YG +
Sbjct: 44 PQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTY 103
Query: 796 SMKV--QGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYND 842
+ V + IL++ LP V + + ++ C+ Y+D
Sbjct: 104 QLDVVERSPHRPILQAGLPANKTVALGSNV----------EFMCKVYSD 142
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN------------- 969
P + T+A + F C++ +DP ++W + + GS+I N
Sbjct: 122 PANKTVALGSNVEFMCKVY--SDPQPHIQWLKHIEV--NGSKIGPDNLPYVQILKTAGVN 177
Query: 970 --DFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
D +L + +V D+G YTC A N G + S LTV
Sbjct: 178 TTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 27/193 (13%)
Query: 1658 RFEVEFDGDPLPTIKWFR--EDFPITSSPDFQIHTFSTKSI---LIMRQVFMEDSGVFAV 1712
+F+ G P PT++W + ++F PD +I + + +IM V D G +
Sbjct: 36 KFKCPSSGTPQPTLRWLKNGKEF----KPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 91
Query: 1713 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL 1772
I EN G + L V E R P ++ + +G F K+ +
Sbjct: 92 IVENEYGSINHTYQLDVVE-----RSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP 146
Query: 1773 DVYWLK----NGKKIIPD-IRYKTL--------EEDNLFTLLIIEAVVEDSGAYECVAMN 1819
+ WLK NG KI PD + Y + + + L + ED+G Y C+A N
Sbjct: 147 HIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGN 206
Query: 1820 NAGEARCEAELVV 1832
+ G + A L V
Sbjct: 207 SIGLSHHSAWLTV 219
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 336 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 392
G T+ +L NGK + HRI + +A ++++ + D G YTC N++G
Sbjct: 43 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVP--SDKGNYTCIVENEYGSI 100
Query: 393 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----N 448
+ L+ V++S + P + + + + + G + F C + +DP+ ++W N
Sbjct: 101 NHTYQLDVVERSPHR-PILQAGLPANKTVALGSNVEFMCKV--YSDPQPHIQWLKHIEVN 157
Query: 449 GKPIFHKN--RVKMVSDFG-------FVVMDIAYVQSHDSGEYVCRAWNN 489
G I N V+++ G V+ + V D+GEY C A N+
Sbjct: 158 GSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 207
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 1047 DEEKPN----PPVFTS--QLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFAT 1099
D KPN P +TS +++ L VP A V F C PT+R W NG+ F
Sbjct: 3 DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLR--WLKNGKEFKP 60
Query: 1100 GSRVKTV-YDFGFISLDMDYVYARDSGEYICRATNKWGTA--MTKAKVICKAKHDIVTES 1156
R+ + S+ MD V D G Y C N++G+ + V+ ++ H + ++
Sbjct: 61 DHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQA 120
Query: 1157 QLP 1159
LP
Sbjct: 121 GLP 123
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C PT+R W NG+ F R+ + S+ MD V D
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLR--WLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDK 86
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 87 GNYTCIVENEYGS 99
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 76/221 (34%), Gaps = 56/221 (25%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN-DFGFVILEINDVYLRDSGLYTCKAT 994
F+C + T P T+ W NGK RI + + ++ V D G YTC
Sbjct: 37 FKCPSSGTPQP--TLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 94
Query: 995 NKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054
N++G + +L V E P+ P
Sbjct: 95 NEYGSINHTYQLDVV--------------------------------------ERSPHRP 116
Query: 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYD 1108
+ + L N V V F C++ SDP I W NG + V+ +
Sbjct: 117 ILQAGLPANKTVALGSNVEFMCKV--YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKT 174
Query: 1109 FGFISLD--MDYVYAR-----DSGEYICRATNKWGTAMTKA 1142
G + D M+ ++ R D+GEY C A N G + A
Sbjct: 175 AGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSA 215
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + + F+C + P L+ W NGK +R+ K+ ++MD
Sbjct: 24 KKLHAVPAAKTVKFKCPSSGTPQPTLR--WLKNGKEFKPDHRIGGYKVRYATWSIIMD-- 79
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N N H+ L + N V V F C+
Sbjct: 80 SVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCK 139
Query: 528 LEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDFGFISLD--MDYVYAR-----DS 574
+ SDP I W NG + V+ + G + D M+ ++ R D+
Sbjct: 140 V--YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 197
Query: 575 GEYICRATNKWGTAMTKA 592
GEY C A N G + A
Sbjct: 198 GEYTCLAGNSIGLSHHSA 215
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 1753 VINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVV-EDSG 1811
+ + +F S T + WLKNGK+ PD R + +I+++VV D G
Sbjct: 28 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKG 87
Query: 1812 AYECVAMNNAGEARCEAELVV 1832
Y C+ N G +L V
Sbjct: 88 NYTCIVENEYGSINHTYQLDV 108
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 78/222 (35%), Gaps = 44/222 (19%)
Query: 1553 LVEDEKPKEAPV--FVSQPEAQK-----VQEGEPARFCTRVTGYPRPRVMWLING----- 1600
+ ++ KP PV + + PE + V + +F +G P+P + WL NG
Sbjct: 1 MADNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKP 60
Query: 1601 -HTIVNEIVRKIT---------------ATETTEMEHKGKIQERVVDASEKPAKPPVFTK 1644
H I VR T T E E+ +D E+ P+
Sbjct: 61 DHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQA 120
Query: 1645 KIQPCRAFE-QDQARFEVEFDGDPLPTIKWFREDFPITSS-------PDFQI-------H 1689
+ + F + DP P I+W + + S P QI
Sbjct: 121 GLPANKTVALGSNVEFMCKVYSDPQPHIQWLKH-IEVNGSKIGPDNLPYVQILKTAGVNT 179
Query: 1690 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 1731
T +L +R V ED+G + +A N G + SA L V E
Sbjct: 180 TDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 221
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 55/174 (31%), Gaps = 56/174 (32%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFG-W------VYPE 1493
++ KF+C + G P + W NGK F P + G + + W V P
Sbjct: 33 KTVKFKCPSS--GTPQPTLRWLKNGK------EFKPDHRIGGYKVRYATWSIIMDSVVPS 84
Query: 1494 DSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQL 1553
D G Y C N YG S HT +
Sbjct: 85 DKGNYTCIVENEYG-------------------------------------SINHTYQLD 107
Query: 1554 VEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWL----INGHTI 1603
V + P + P + V G F +V P+P + WL +NG I
Sbjct: 108 VVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI 161
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 737 PKLKVEWFWNGKPMKTGSRFRTF-CDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSA 795
P+ + W NGK K R + + + + V P D G Y+C N+YG +
Sbjct: 45 PQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTY 104
Query: 796 SMKV--QGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYND 842
+ V + IL++ LP V + + ++ C+ Y+D
Sbjct: 105 QLDVVERSPHRPILQAGLPANKTVALGSNV----------EFMCKVYSD 143
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN------------- 969
P + T+A + F C++ +DP ++W + + GS+I N
Sbjct: 123 PANKTVALGSNVEFMCKVY--SDPQPHIQWLKHIEV--NGSKIGPDNLPYVQILKTAGVN 178
Query: 970 --DFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
D +L + +V D+G YTC A N G + S LTV
Sbjct: 179 TTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH-NGKALSAGS---RIKTINDF 971
AP + P DL + E A +CR + + +V W NG ++ G+ RI ++D
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTS---LTSVSWITPNGTVMTHGAYKVRIAVLSDG 397
Query: 972 GFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKG 1010
L +V ++D+G+YTC +N G T S L V G
Sbjct: 398 ---TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 706 APVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFW-NGKPMKTGSRFRTFCDFGF 764
APV P ++++ + EG A + R + + V W NG M G+
Sbjct: 341 APVIVEPPADLN-VTEGMAAELKCRASTSLT---SVSWITPNGTVMTHGAYKVRIAVLSD 396
Query: 765 VILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQG 801
L + V +D G Y+C N G SA++ V G
Sbjct: 397 GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 1854 APTVAEPLKDQNVKEGSAVTLKCR 1877
AP + EP D NV EG A LKCR
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCR 364
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular
Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The Extracellular
Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1)
Length = 225
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 27/193 (13%)
Query: 1658 RFEVEFDGDPLPTIKWFR--EDFPITSSPDFQIHTFSTKSI---LIMRQVFMEDSGVFAV 1712
+F+ G P PT++W + ++F PD +I + + +IM V D G +
Sbjct: 35 KFKCPSSGTPNPTLRWLKNGKEF----KPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTC 90
Query: 1713 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL 1772
I EN G + L V E R P ++ + +G F K+ +
Sbjct: 91 IVENEYGSINHTYQLDVVE-----RSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP 145
Query: 1773 DVYWLK----NGKKIIPD-IRYKTL--------EEDNLFTLLIIEAVVEDSGAYECVAMN 1819
+ WLK NG KI PD + Y + + + L + ED+G Y C+A N
Sbjct: 146 HIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGN 205
Query: 1820 NAGEARCEAELVV 1832
+ G + A L V
Sbjct: 206 SIGLSHHSAWLTV 218
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 336 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 392
G T+ +L NGK + HRI + +A ++++ + D G YTC N++G
Sbjct: 42 GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVP--SDKGNYTCIVENEYGSI 99
Query: 393 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----N 448
+ L+ V++S + P + + + + + G + F C + +DP+ ++W N
Sbjct: 100 NHTYQLDVVERSPHR-PILQAGLPANKTVALGSNVEFMCKV--YSDPQPHIQWLKHIEVN 156
Query: 449 GKPIFHKN--RVKMVSDFG-------FVVMDIAYVQSHDSGEYVCRAWNN 489
G I N V+++ G V+ + V D+GEY C A N+
Sbjct: 157 GSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 206
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 1047 DEEKPN----PPVFTS--QLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFAT 1099
D KPN P +TS +++ L VP A V F C +PT+R W NG+ F
Sbjct: 2 DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLR--WLKNGKEFKP 59
Query: 1100 GSRVKTV-YDFGFISLDMDYVYARDSGEYICRATNKWGTA--MTKAKVICKAKHDIVTES 1156
R+ + S+ MD V D G Y C N++G+ + V+ ++ H + ++
Sbjct: 60 DHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQA 119
Query: 1157 QLP 1159
LP
Sbjct: 120 GLP 122
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C +PT+R W NG+ F R+ + S+ MD V D
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLR--WLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDK 85
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 86 GNYTCIVENEYGS 98
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 77/221 (34%), Gaps = 56/221 (25%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN-DFGFVILEINDVYLRDSGLYTCKAT 994
F+C + T +P T+ W NGK RI + + ++ V D G YTC
Sbjct: 36 FKCPSSGTPNP--TLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVE 93
Query: 995 NKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054
N++G + +L V E P+ P
Sbjct: 94 NEYGSINHTYQLDVV--------------------------------------ERSPHRP 115
Query: 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYD 1108
+ + L N V V F C++ SDP I W NG + V+ +
Sbjct: 116 ILQAGLPANKTVALGSNVEFMCKV--YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKT 173
Query: 1109 FGFISLD--MDYVYAR-----DSGEYICRATNKWGTAMTKA 1142
G + D M+ ++ R D+GEY C A N G + A
Sbjct: 174 AGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSA 214
Score = 37.7 bits (86), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 73/198 (36%), Gaps = 27/198 (13%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + + F+C + +P L+ W NGK +R+ K+ ++MD
Sbjct: 23 KKLHAVPAAKTVKFKCPSSGTPNPTLR--WLKNGKEFKPDHRIGGYKVRYATWSIIMD-- 78
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N N H+ L + N V V F C+
Sbjct: 79 SVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCK 138
Query: 528 LEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDFGFISLD--MDYVYAR-----DS 574
+ SDP I W NG + V+ + G + D M+ ++ R D+
Sbjct: 139 V--YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 196
Query: 575 GEYICRATNKWGTAMTKA 592
GEY C A N G + A
Sbjct: 197 GEYTCLAGNSIGLSHHSA 214
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 56/174 (32%), Gaps = 56/174 (32%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFG-W------VYPE 1493
++ KF+C + G PN + W NGK F P + G + + W V P
Sbjct: 32 KTVKFKCPSS--GTPNPTLRWLKNGK------EFKPDHRIGGYKVRYATWSIIMDSVVPS 83
Query: 1494 DSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQL 1553
D G Y C N YG S HT +
Sbjct: 84 DKGNYTCIVENEYG-------------------------------------SINHTYQLD 106
Query: 1554 VEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWL----INGHTI 1603
V + P + P + V G F +V P+P + WL +NG I
Sbjct: 107 VVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKI 160
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 1753 VINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVV-EDSG 1811
+ + +F S T + WLKNGK+ PD R + +I+++VV D G
Sbjct: 27 AVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKG 86
Query: 1812 AYECVAMNNAGEARCEAELVV 1832
Y C+ N G +L V
Sbjct: 87 NYTCIVENEYGSINHTYQLDV 107
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 18/143 (12%)
Query: 706 APVFTVPLS---NIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTF-CD 761
AP +T P + + + F+ + T +P L+ W NGK K R +
Sbjct: 12 APYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLR--WLKNGKEFKPDHRIGGYKVR 69
Query: 762 FGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKV--QGKRSIILESQLPKGMEVFI 819
+ + + V P D G Y+C N+YG + + V + IL++ LP V +
Sbjct: 70 YATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL 129
Query: 820 SFHEISPVYPEDCGQYSCRAYND 842
+ ++ C+ Y+D
Sbjct: 130 GSNV----------EFMCKVYSD 142
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 76/220 (34%), Gaps = 44/220 (20%)
Query: 1555 EDEKPKEAPV--FVSQPEAQK-----VQEGEPARFCTRVTGYPRPRVMWLING------H 1601
++ KP PV + + PE + V + +F +G P P + WL NG H
Sbjct: 2 DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDH 61
Query: 1602 TIVNEIVRKIT---------------ATETTEMEHKGKIQERVVDASEKPAKPPVFTKKI 1646
I VR T T E E+ +D E+ P+ +
Sbjct: 62 RIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGL 121
Query: 1647 QPCRAFE-QDQARFEVEFDGDPLPTIKWFREDFPITSS-------PDFQI-------HTF 1691
+ F + DP P I+W + + S P QI T
Sbjct: 122 PANKTVALGSNVEFMCKVYSDPQPHIQWLKH-IEVNGSKIGPDNLPYVQILKTAGVNTTD 180
Query: 1692 STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 1731
+L +R V ED+G + +A N G + SA L V E
Sbjct: 181 KEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN------------- 969
P + T+A + F C++ +DP ++W + + GS+I N
Sbjct: 122 PANKTVALGSNVEFMCKVY--SDPQPHIQWLKHIEV--NGSKIGPDNLPYVQILKTAGVN 177
Query: 970 --DFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
D +L + +V D+G YTC A N G + S LTV
Sbjct: 178 TTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 1738 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIR-YKTLEEDN 1796
G PP+F ++ + GQ ++ V WL+N + + PD R + E
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 1797 LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
L L I+ A D+G Y C A+N G +CEA L V+
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 704 RQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSR-FRTFCDF 762
+ P F V L + +REG++ R+ +PK V W N +P++ R F +
Sbjct: 3 KAPPTFKVSLMD-QSVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEG 59
Query: 763 GFVILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGK 802
G L I D G Y+C+A N+YG A ++V+G+
Sbjct: 60 GLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 38.5 bits (88), Expect = 0.034, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 1422 KQPPRFVTQIKTQDQLV-EMQSTKFECQLAPVGDPNMKVEWFLNGKPL-PHKNRFNPIYD 1479
K PP F ++ DQ V E Q ++ G+P V W N +P+ P + RF +
Sbjct: 3 KAPPTF--KVSLMDQSVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAE 58
Query: 1480 FGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGK 1520
G + D+G Y C+A N YG + A L+ G+
Sbjct: 59 GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 336 GDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 394
G+ V +L N +P+ R A G+ L IL + D G YTC+A N++G +
Sbjct: 31 GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC 90
Query: 395 SVNLE 399
LE
Sbjct: 91 EARLE 95
Score = 34.7 bits (78), Expect = 0.48, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSR-IKTINDFGFVI 975
P F + D ++ E R+ +P V W N + + R + G
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 976 LEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKG 1010
L I D+G YTCKA N++G +L V+G
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 34.3 bits (77), Expect = 0.65, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 237 PFTEWFVNNKPL-PAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
P W N +P+ P +F + G L I+ A D+G YT KA N G+ L
Sbjct: 35 PVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Query: 296 K 296
+
Sbjct: 95 E 95
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 602 IVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+V W N + + P R+ + G+ L IL ++G Y C+A N+YG+ +A L+
Sbjct: 36 VVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSR-VKTVYDFGF 1111
PP F L D V E V R++ + P + W N +P R + G
Sbjct: 5 PPTFKVSLMDQ-SVREGQDVIMSIRVQGEPKPV--VSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 1112 ISLDMDYVYARDSGEYICRATNKWGTAMTKAKV 1144
L + D+G Y C+A N++G +A++
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 1560 KEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLIN 1599
K P F Q V+EG+ RV G P+P V WL N
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRN 42
Score = 31.6 bits (70), Expect = 4.8, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 1698
PP F + E + G+P P + W R P+ PD + + L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV--RPDQRRFAEEAEGGLC 62
Query: 1699 MRQVFME---DSGVFAVIAENRGGKAKCSANLVV 1729
++ D+G + A N G +C A L V
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 31.6 bits (70), Expect = 4.8, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 1 VEPRADPNLKIEWFKNGVPLSLGSR-IRSTFDFGLVTLSINSLRADDSAIYTCKATNLLG 59
+ + +P + W +N P+ R + GL L I + D+ YTCKA N G
Sbjct: 27 IRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYG 86
Query: 60 EAVSTCTLKIEDR 72
C ++E R
Sbjct: 87 --ARQCEARLEVR 97
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With
Fgf1
Length = 334
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 35/200 (17%)
Query: 1655 DQARFEVEFDGDPLPTIKW------FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG 1708
+ RF G+P P+I W FR + I I + L+M V D G
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG-----IKLRHQQWSLVMESVVPSDRG 193
Query: 1709 VFAVIAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAK 1765
+ + EN+ G + + L V E+ R + G+ P+ T + +G F K
Sbjct: 194 NYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL--PANQTAV------LGSDVEFHCK 245
Query: 1766 ISATKPLDVYWLK----NGKKIIPD-IRYKTL--------EEDNLFTLLIIEAVVEDSGA 1812
+ + + WLK NG K+ PD Y T+ + L L + ED+G
Sbjct: 246 VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE 305
Query: 1813 YECVAMNNAGEARCEAELVV 1832
Y C+A N+ G + A LVV
Sbjct: 306 YTCLAGNSIGFSHHSAWLVV 325
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 1064 LDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYAR 1122
L VP A V F C +PT I W NGR F R+ + SL M+ V
Sbjct: 133 LAVPAANTVRFRC--PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS 190
Query: 1123 DSGEYICRATNKWGTAMT--KAKVICKAKHDIVTESQLPDSMSA 1164
D G Y C NK+G+ V+ ++ H + ++ LP + +A
Sbjct: 191 DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 234
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 21/170 (12%)
Query: 336 GDQTMTVEFLYNGKPIEASHRIRTV---HAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 392
G+ T ++ +L NG+ HRI + H +V+E + D G YTC NK+G
Sbjct: 149 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV--VPSDRGNYTCVVENKFGSI 206
Query: 393 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----N 448
+ L+ +++S + P + + + + G F C + +D + ++W N
Sbjct: 207 RQTYTLDVLERSPHR-PILQAGLPANQTAVLGSDVEFHCKV--YSDAQPHIQWLKHVEVN 263
Query: 449 GKPI---------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNN 489
G + K +D V+ + V D+GEY C A N+
Sbjct: 264 GSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS 313
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 514 LDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYAR 572
L VP A V F C +PT I W NGR F R+ + SL M+ V
Sbjct: 133 LAVPAANTVRFRC--PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS 190
Query: 573 DSGEYICRATNKWGT 587
D G Y C NK+G+
Sbjct: 191 DRGNYTCVVENKFGS 205
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 1442 STKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPI-YDFGYVAMNFGWVYPEDSGEYLC 1500
+ +F C A G+P + W NG+ ++R I ++ V P D G Y C
Sbjct: 140 TVRFRCPAA--GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 1501 RATNLYG 1507
N +G
Sbjct: 198 VVENKFG 204
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular
Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The Extracellular
Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The Extracellular
Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The Extracellular
Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2)
Length = 220
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 29/197 (14%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 1711
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 84
Query: 1712 VIAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA 1768
+ EN G + +L V E+ R + G+ P+ +T+ VG F K+ +
Sbjct: 85 CVVENEYGSINHTYHLDVVERSPHRPILQAGL--PANASTV------VGGDVEFVCKVYS 136
Query: 1769 TKPLDVYWLK----NGKKIIPD-IRY-KTLEEDNLFT-------LLIIEAVVEDSGAYEC 1815
+ W+K NG K PD + Y K L+ + T L I ED+G Y C
Sbjct: 137 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 196
Query: 1816 VAMNNAGEARCEAELVV 1832
+A N+ G + A L V
Sbjct: 197 LAGNSIGISFHSAWLTV 213
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 1057 TSQLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISL 1114
T +++ L VP A V F C PTMR W NG+ F R+ SL
Sbjct: 13 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSL 70
Query: 1115 DMDYVYARDSGEYICRATNKWGTA--MTKAKVICKAKHDIVTESQLPDSMS 1163
M+ V D G Y C N++G+ V+ ++ H + ++ LP + S
Sbjct: 71 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAS 121
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 26/175 (14%)
Query: 334 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 34 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 89
Query: 388 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 447
++G + +L+ V++S + P + + + G F C + +D + ++W
Sbjct: 90 EYGSINHTYHLDVVERSPHR-PILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIK 146
Query: 448 -----------NGKPIFHKNRVKMV--SDFGFVVMDIAYVQSHDSGEYVCRAWNN 489
+G P + V +D V+ I V D+GEY C A N+
Sbjct: 147 HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 201
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 73/220 (33%), Gaps = 58/220 (26%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T+ W NGK RI K N +I+E V D G YTC N
Sbjct: 32 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 89
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
++G + L V E P+ P+
Sbjct: 90 EYGSINHTYHLDVV--------------------------------------ERSPHRPI 111
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDF 1109
+ L N G V F C++ SD I W NG + +K +
Sbjct: 112 LQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 1110 GFISLD--MDYVYAR-----DSGEYICRATNKWGTAMTKA 1142
G + D ++ +Y R D+GEY C A N G + A
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 209
Score = 37.4 bits (85), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C PTMR W NG+ F R+ SL M+ V D
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 81 GNYTCVVENEYGS 93
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1422 KQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIY 1478
K+ P + K + +L + + KF C G+P + W NGK ++R
Sbjct: 5 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIG--- 59
Query: 1479 DFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
GY N W V P D G Y C N YG
Sbjct: 60 --GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + ++ F C +P + W NGK ++R+ K+ + ++M+
Sbjct: 18 KRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME-- 73
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N N H+ L + N G V F C+
Sbjct: 74 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCK 133
Query: 528 LEPKSDPTMRIDWFF----NGRPFATGS--RVKTVYDFGFISLD--MDYVYAR-----DS 574
+ SD I W NG + +K + G + D ++ +Y R D+
Sbjct: 134 V--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 575 GEYICRATNKWGTAMTKA 592
GEY C A N G + A
Sbjct: 192 GEYTCLAGNSIGISFHSA 209
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 29/197 (14%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 1711
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 84
Query: 1712 VIAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA 1768
+ EN G + +L V E+ R + G+ P+ +T+ VG F K+ +
Sbjct: 85 CVVENEYGSINHTYHLDVVERWPHRPILQAGL--PANASTV------VGGDVEFVCKVYS 136
Query: 1769 TKPLDVYWLK----NGKKIIPD-IRY-KTLEEDNLFT-------LLIIEAVVEDSGAYEC 1815
+ W+K NG K PD + Y K L+ + T L I ED+G Y C
Sbjct: 137 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 196
Query: 1816 VAMNNAGEARCEAELVV 1832
+A N+ G + A L V
Sbjct: 197 LAGNSIGISFHSAWLTV 213
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 1057 TSQLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISL 1114
T +++ L VP A V F C PTMR W NG+ F R+ SL
Sbjct: 13 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSL 70
Query: 1115 DMDYVYARDSGEYICRATNKWGTA--MTKAKVICKAKHDIVTESQLPDSMS 1163
M+ V D G Y C N++G+ V+ + H + ++ LP + S
Sbjct: 71 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANAS 121
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 73/220 (33%), Gaps = 58/220 (26%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T+ W NGK RI K N +I+E V D G YTC N
Sbjct: 32 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 89
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
++G + L V E P+ P+
Sbjct: 90 EYGSINHTYHLDVV--------------------------------------ERWPHRPI 111
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDF 1109
+ L N G V F C++ SD I W NG + +K +
Sbjct: 112 LQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 1110 GFISLD--MDYVYAR-----DSGEYICRATNKWGTAMTKA 1142
G + D ++ +Y R D+GEY C A N G + A
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 209
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 334 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 34 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 89
Query: 388 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 447
++G + +L+ V++ + P + + + G F C + +D + ++W
Sbjct: 90 EYGSINHTYHLDVVERWPHR-PILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIK 146
Query: 448 -----------NGKPIFHKNRVKMV--SDFGFVVMDIAYVQSHDSGEYVCRAWNN 489
+G P + V +D V+ I V D+GEY C A N+
Sbjct: 147 HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 201
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C PTMR W NG+ F R+ SL M+ V D
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 81 GNYTCVVENEYGS 93
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1422 KQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIY 1478
K+ P + K + +L + + KF C G+P + W NGK ++R
Sbjct: 5 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIG--- 59
Query: 1479 DFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
GY N W V P D G Y C N YG
Sbjct: 60 --GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + ++ F C +P + W NGK ++R+ K+ + ++M+
Sbjct: 18 KRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME-- 73
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N N H+ L + N G V F C+
Sbjct: 74 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCK 133
Query: 528 LEPKSDPTMRIDWFF----NGRPFATGS--RVKTVYDFGFISLD--MDYVYAR-----DS 574
+ SD I W NG + +K + G + D ++ +Y R D+
Sbjct: 134 V--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 575 GEYICRATNKWGTAMTKA 592
GEY C A N G + A
Sbjct: 192 GEYTCLAGNSIGISFHSA 209
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 29/197 (14%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 1711
+ +F G+P+PT++W + + +I + ++ LIM V D G +
Sbjct: 26 NTVKFRCPAGGNPMPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 83
Query: 1712 VIAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA 1768
+ EN G + +L V E+ R + G+ P+ +T+ VG F K+ +
Sbjct: 84 CVVENEYGSINHTYHLDVVERSPHRPILQAGL--PANASTV------VGGDVEFVCKVYS 135
Query: 1769 TKPLDVYWLK----NGKKIIPD-IRY-KTLEEDNLFT-------LLIIEAVVEDSGAYEC 1815
+ W+K NG K PD + Y K L+ + T L I ED+G Y C
Sbjct: 136 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 195
Query: 1816 VAMNNAGEARCEAELVV 1832
+A N+ G + A L V
Sbjct: 196 LAGNSIGISFHSAWLTV 212
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 1057 TSQLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISL 1114
T +++ L VP A V F C PTMR W NG+ F R+ SL
Sbjct: 12 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSL 69
Query: 1115 DMDYVYARDSGEYICRATNKWGTA--MTKAKVICKAKHDIVTESQLPDSMS 1163
M+ V D G Y C N++G+ V+ ++ H + ++ LP + S
Sbjct: 70 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAS 120
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 26/175 (14%)
Query: 334 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 33 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 88
Query: 388 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 447
++G + +L+ V++S + P + + + G F C + +D + ++W
Sbjct: 89 EYGSINHTYHLDVVERSPHR-PILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIK 145
Query: 448 -----------NGKPIFHKNRVKMV--SDFGFVVMDIAYVQSHDSGEYVCRAWNN 489
+G P + V +D V+ I V D+GEY C A N+
Sbjct: 146 HVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 200
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 73/220 (33%), Gaps = 58/220 (26%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T+ W NGK RI K N +I+E V D G YTC N
Sbjct: 31 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 88
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
++G + L V E P+ P+
Sbjct: 89 EYGSINHTYHLDVV--------------------------------------ERSPHRPI 110
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDF 1109
+ L N G V F C++ SD I W NG + +K +
Sbjct: 111 LQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 168
Query: 1110 GFISLD--MDYVYAR-----DSGEYICRATNKWGTAMTKA 1142
G + D ++ +Y R D+GEY C A N G + A
Sbjct: 169 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 208
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C PTMR W NG+ F R+ SL M+ V D
Sbjct: 22 VPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 79
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 80 GNYTCVVENEYGS 92
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1422 KQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIY 1478
K+ P + K + +L + + KF C G+P + W NGK ++R
Sbjct: 4 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIG--- 58
Query: 1479 DFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
GY N W V P D G Y C N YG
Sbjct: 59 --GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 91
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + ++ F C +P + W NGK ++R+ K+ + ++M+
Sbjct: 17 KRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME-- 72
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N N H+ L + N G V F C+
Sbjct: 73 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCK 132
Query: 528 LEPKSDPTMRIDWFF----NGRPFATGS--RVKTVYDFGFISLD--MDYVYAR-----DS 574
+ SD I W NG + +K + G + D ++ +Y R D+
Sbjct: 133 V--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 190
Query: 575 GEYICRATNKWGTAMTKA 592
GEY C A N G + A
Sbjct: 191 GEYTCLAGNSIGISFHSA 208
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 1736 GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE- 1794
G P F + I G F +++ +YW K+GK+I P + T++
Sbjct: 1 GGSNATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD 60
Query: 1795 -DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
D +L + ++D G Y +A N G C L+VQ+
Sbjct: 61 LDGTCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQA 101
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD---FQIHTFST 1693
A P F K++ + FE F G+P P I WF++ I+ D Q T
Sbjct: 5 ATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 64
Query: 1694 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGR 1737
S+ ++D G + ++A N G+ C+ L+V+ Q GR
Sbjct: 65 CSLHTTAST-LDDDGNYTIMAANPQGRVSCTGRLMVQAVNQRGR 107
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 1562 APVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
AP F + + K+ EG P F RV G P+P++ W +G I
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 48
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN-DF-GF 973
AP F + E F CR+ +P + WF +GK +S S TI D G
Sbjct: 7 APFFEMKLKHYKIFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 64
Query: 974 VILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
L L D G YT A N G + + +L V+
Sbjct: 65 CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQ 100
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 900 GYGHEREDRIEEDLGKAPEFLTTPTD-LTLAESTLAHFECRLTPTNDPSMTVEWFHNGKA 958
G G ++ ++ + AP++ P + + + C++T P+ V W HN K
Sbjct: 292 GVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGL--PAPNVVWSHNAKP 349
Query: 959 LSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGE 999
LS G T+ D G VI + + D G Y C+ATN+HG+
Sbjct: 350 LSGGR--ATVTDSGLVIKGVKN---GDKGYYGCRATNEHGD 385
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 376 EDTGVYTCRATNKWGQAEI-SVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT 434
ED GVYTC N G+ + S+ L V PK+ + + +K G C +T
Sbjct: 280 EDEGVYTCEVDNGVGKPQKHSLKLTVVSA-----PKYEQKPEKVIVVKQGQDVTIPCKVT 334
Query: 435 PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 488
+ P V W HN KP+ V+D G V I V++ D G Y CRA N
Sbjct: 335 GL--PAPNVVWSHNAKPL--SGGRATVTDSGLV---IKGVKNGDKGYYGCRATN 381
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 89/398 (22%), Positives = 143/398 (35%), Gaps = 58/398 (14%)
Query: 421 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-FHKNRVKMVSDFGFVVMDIAYVQSHDS 479
++ + EC + ND +K W +GK + ++ + D G +V Q+ D
Sbjct: 18 FRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVF--LRPQASDE 74
Query: 480 GEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGK-VHFDCRLEPKSDPTMRI 538
G Y C A + SP++ + P G+ DC L P + P I
Sbjct: 75 GHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVL-PNAYPKPLI 133
Query: 539 DW---FFNGRPFATGS----RVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK 591
W P A + R+ D + D +Y+C A N A
Sbjct: 134 TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN----AAVD 189
Query: 592 AKVICKVLTVIVEW----------FYNGKKLPHGHRYRTFHDFGIVILDILYC-YEENSG 640
+V V+VE+ Y G+ +P G V + +YC Y N
Sbjct: 190 EEV------VLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTM--IYCMYGSNPM 241
Query: 641 VYECRATNKYGSDVTKASLKCVSKTN------LILESQLPEGMEGGLEKIQTLE--DAAH 692
Y N G DV +++ N L+ ++ LPE E + T E +
Sbjct: 242 GYPNYFKN--GKDVNGNPEDRITRHNRTSGKRLLFKTTLPED-----EGVYTCEVDNGVG 294
Query: 693 LRRTETADIEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKT 752
+ + + AP + + +++G++ ++T P V W N KP+
Sbjct: 295 KPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGL--PAPNVVWSHNAKPLSG 352
Query: 753 GSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGE 790
G T D G VI V D G Y CRA N++G+
Sbjct: 353 GRA--TVTDSGLVI---KGVKNGDKGYYGCRATNEHGD 385
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 69/196 (35%), Gaps = 52/196 (26%)
Query: 944 NDPSMTVEWFHNGKALSAG--SRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEAT 1001
++P +F NGK ++ RI N L D G+YTC+ N G+
Sbjct: 238 SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 297
Query: 1002 T-SCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQL 1060
S KLTV VSA E+KP + Q
Sbjct: 298 KHSLKLTV-----------VSAPKY----------------------EQKPEKVIVVKQG 324
Query: 1061 QDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVY 1120
QD V C++ P + W N +P + G TV D G + + V
Sbjct: 325 QD---------VTIPCKVT--GLPAPNVVWSHNAKPLSGGR--ATVTDSGLV---IKGVK 368
Query: 1121 ARDSGEYICRATNKWG 1136
D G Y CRATN+ G
Sbjct: 369 NGDKGYYGCRATNEHG 384
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 273 EDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASL 332
ED G+YT + N G L+ V+ P + + + + + +G+ +
Sbjct: 280 EDEGVYTCEVDNGVGKPQKH----SLKLTVVSA--PKYEQKPEKVIVVKQGQDVTIPCKV 333
Query: 333 IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 390
G V + +N KP+ TV G+V I G K D G Y CRATN+ G
Sbjct: 334 --TGLPAPNVVWSHNAKPLSGGRA--TVTDSGLV---IKGVKNGDKGYYGCRATNEHG 384
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 21/176 (11%)
Query: 1663 FDGDPLPTIKWFREDFPITSSPDFQI--HTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 1720
+ +P+ +F+ + +P+ +I H ++ L+ + ED GV+ +N GK
Sbjct: 236 YGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK 295
Query: 1721 -AKCSANLVVEEKRQGGRGGVVPPSFLTTISSA-VINVGQLARFDAKISATKPLDVYWLK 1778
K S L V V P + V+ GQ K++ +V W
Sbjct: 296 PQKHSLKLTV----------VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH 345
Query: 1779 NGKKIIPDIRYKTLEEDNLFTLLIIEAVVE-DSGAYECVAMNNAGEARCEAELVVQ 1833
N K + T+ + L+I+ V D G Y C A N G+ E + V
Sbjct: 346 NAKPL--SGGRATVTDSG----LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVIL 976
P L P + TLA A +C+ T DP + W G TI + G L
Sbjct: 9 PIILQGPANQTLAVDGTALLKCK--ATGDPLPVISWLKEGFTFPGRDPRATIQEQG--TL 64
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
+I ++ + D+G YTC AT+ GE + S L V
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 1724
GDPLP I W +E F T + L ++ + + D+G + +A + G+ S
Sbjct: 34 GDPLPVISWLKEGFTFPGRDPRA--TIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWS 91
Query: 1725 ANLVVEE 1731
A L V E
Sbjct: 92 AVLDVTE 98
Score = 35.0 bits (79), Expect = 0.44, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 1735 GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794
G G PP L ++ + V A K + + WLK G T++E
Sbjct: 1 GSSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE 60
Query: 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
TL I + D+G Y CVA +++GE A L V
Sbjct: 61 QG--TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVST 64
DP I W K G G R+T TL I +LR D+ YTC AT+ GE +
Sbjct: 34 GDPLPVISWLKEGFTFP-GRDPRATIQ-EQGTLQIKNLRISDTGTYTCVATSSSGETSWS 91
Query: 65 CTLKIED 71
L + +
Sbjct: 92 AVLDVTE 98
Score = 30.4 bits (67), Expect = 9.8, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 336 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 395
GD + +L G T+ G L+I +I DTG YTC AT+ G+ S
Sbjct: 34 GDPLPVISWLKEGFTFPGRDPRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWS 91
Query: 396 VNLECVD 402
L+ +
Sbjct: 92 AVLDVTE 98
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 18/172 (10%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 483
G+ F C + PE + WF NGK I + K + + + + + D G YV
Sbjct: 19 GEEMTFSCRAS--GSPEPAISWFRNGKLI--EENEKYILKGSNTELTVRNIINSDGGPYV 74
Query: 484 CRAWNNXXXXXXXXXXXX----HQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRID 539
CRA N H I+L N E G+V C E + P +
Sbjct: 75 CRATNKAGEDEKQAFLQVFVQPHIIQL-----KNETTYENGQVTLVCDAEGEPIPEITWK 129
Query: 540 WFFNGRPFATG-----SRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWG 586
+G F G R++ G SL + V DSG Y C A ++ G
Sbjct: 130 RAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 1445 FECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATN 1504
F C+ + G P + WF NGK + ++ I + + D G Y+CRATN
Sbjct: 24 FSCRAS--GSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATN 79
Query: 1505 LYGMDETRAILKTTGKPGII 1524
G DE +A L+ +P II
Sbjct: 80 KAGEDEKQAFLQVFVQPHII 99
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 73/206 (35%), Gaps = 53/206 (25%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995
F CR + + +P+++ WF NGK + K I L + ++ D G Y C+ATN
Sbjct: 24 FSCRASGSPEPAIS--WFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYVCRATN 79
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
K GE L V V+P + IQ E Y
Sbjct: 80 KAGEDEKQAFLQVF------VQPHI----------IQLKNETTY---------------- 107
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATG-----SRVKTVYDFG 1110
E G+V C E + P + +G F G R++ G
Sbjct: 108 ------------ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG 155
Query: 1111 FISLDMDYVYARDSGEYICRATNKWG 1136
SL + V DSG Y C A ++ G
Sbjct: 156 SSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 22/178 (12%)
Query: 1574 VQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQE------ 1627
+ GE F R +G P P + W NG ++ E + I TE+ + I
Sbjct: 16 AERGEEMTFSCRASGSPEPAISWFRNGK-LIEENEKYILKGSNTELTVRNIINSDGGPYV 74
Query: 1628 -RVVDASEKPAKPPVFTKKIQPC-------RAFEQDQARFEVEFDGDPLPTIKWFR--ED 1677
R + + + K +QP +E Q + +G+P+P I W R +
Sbjct: 75 CRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDG 134
Query: 1678 FPITSSPD-----FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 1730
F T ++ S L ++ V + DSG + A +R G + S L +E
Sbjct: 135 FTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 20/175 (11%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 1714
++ F G P P I WFR I + + + +T+ L +R + D G + A
Sbjct: 20 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRA 77
Query: 1715 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARF-DAK------IS 1767
N+ G+ + A L V V P + + GQ+ DA+ I+
Sbjct: 78 TNKAGEDEKQAFLQV----------FVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEIT 127
Query: 1768 ATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAG 1822
+ +D + G K + D R + + +L I + + DSG Y+C A + G
Sbjct: 128 WKRAVDGFTFTEGDKSL-DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 707 PVFTVPLSNIDDLRE-GENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFV 765
P ++P + + E GE F R + + +P + WF NGK ++ ++
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPA--ISWFRNGKLIEENEKY--ILKGSNT 58
Query: 766 ILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKV 799
L + + D G Y CRA N GE A ++V
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 26/134 (19%)
Query: 1751 SAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDS 1810
+A G+ F + S + + W +NGK I + +Y L+ N L + + D
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-ILKGSNT-ELTVRNIINSDG 70
Query: 1811 GAYECVAMNNAGEARCEA--ELVVQSXXXXXXXXXXXXXXXXXDEAPTVAEPLKDQNVKE 1868
G Y C A N AGE +A ++ VQ P + + LK++ E
Sbjct: 71 GPYVCRATNKAGEDEKQAFLQVFVQ---------------------PHIIQ-LKNETTYE 108
Query: 1869 GSAVTLKCRITGKP 1882
VTL C G+P
Sbjct: 109 NGQVTLVCDAEGEP 122
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 603 VEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
+ WF NGK + +Y + + + +I+ + G Y CRATNK G D +A L+
Sbjct: 36 ISWFRNGKLIEENEKYILKGSNTELTVRNII---NSDGGPYVCRATNKAGEDEKQAFLQV 92
Query: 662 VSKTNLI 668
+ ++I
Sbjct: 93 FVQPHII 99
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 22/154 (14%)
Query: 342 VEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 400
+ + NGK IE + + I + V I+ + D G Y CRATNK G+ E L+
Sbjct: 36 ISWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNKAGEDEKQAFLQV 92
Query: 401 VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEW--------FHNGKPI 452
QP HI L+ ++ +P ++ W F G
Sbjct: 93 FV----QP-----HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKS 143
Query: 453 FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 486
R+++ G + I V+ DSG Y C A
Sbjct: 144 L-DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 14/167 (8%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLK 296
P WF N K + K+ L + D G Y +ATN G L+
Sbjct: 34 PAISWFRNGKLIEENEKYILKGS--NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 91
Query: 297 CLERLFVNHNYPLFSLQFQHLSNLSEGEIA---HFEASLIPVGDQTMTVE-FLYNGKPIE 352
+FV + +Q ++ + G++ E IP V+ F +
Sbjct: 92 ----VFVQPHI----IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKS 143
Query: 353 ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 399
RI G L I K+ D+G Y C A ++ G + S+ L+
Sbjct: 144 LDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 190
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 960 SAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
S RI+ G L I DV L DSG Y C+A ++ G S L ++
Sbjct: 143 SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin
Length = 110
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 1735 GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794
G G P F + I G F +++ +YW K+GK+I P + T++
Sbjct: 1 GSSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR 60
Query: 1795 --DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
D +L + ++D G Y +A N G C L+VQ+
Sbjct: 61 DLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 1632 ASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD---FQI 1688
S + P F K++ + FE F G+P P I WF++ I+ D Q
Sbjct: 1 GSSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR 60
Query: 1689 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGG 1739
T S+ ++D G + ++A N G+ C+ L+V+ G G
Sbjct: 61 DLDGTCSLHTTAST-LDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPSSG 110
Score = 38.5 bits (88), Expect = 0.035, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 1562 APVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
AP F + + K+ EG P F RV G P+P++ W +G I
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 49
Score = 35.0 bits (79), Expect = 0.37, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN-DF-GF 973
AP F + E F CR+ +P + WF +GK +S S TI D G
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 974 VILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKG 1010
L L D G YT A N G + + +L V+
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin A168-
A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin A168-
A169
Length = 197
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 1562 APVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNE--------------- 1606
AP F + V+ A +VTG+P+P V W G I+ +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 1607 -IVRKITATETTEMEHKGKIQERVVDAS-----EKPAKP--PVFTKKIQPCRAFEQDQAR 1658
I+ +T + T + + Q V + E PAK P + + A +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 1659 FEVEFDGDPLPTIKWFREDFPITSSPDFQ-IHTFSTKSILIMRQVFMEDSGVFAVIAENR 1717
++ F G P P I W + I ++ +Q I T S S++ V +D+G + V A+NR
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 1718 GG 1719
G
Sbjct: 184 FG 185
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 10/200 (5%)
Query: 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP-DFQIHTFSTK- 1694
A P F ++++ Q A + G P P +KW+R+ I + ++I F
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 1695 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 1754
LI+ V +D+ V+ V A N+GG +A+L VE + + P L + +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK-----IHLPKTLEGMGAVHA 116
Query: 1755 NVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVE--DSGA 1812
G++ S KP V + G+ +I + + + FT L+ VE D+G
Sbjct: 117 LRGEVVSIKIPFSG-KPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 1813 YECVAMNNAGEARCEAELVV 1832
Y A N G + EL V
Sbjct: 176 YVVCAKNRFGIDQKTVELDV 195
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF--GF 973
AP F +L + + A C++T P V+W+ GK + A I +F G+
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 974 VILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQK 1033
L I V D+ +Y +ATN+ G + + L V+ I + + + A +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGA-----VHA 116
Query: 1034 LE-EALYRKDELIPDEEKPNPPVFTSQLQDNLD 1065
L E + K IP KP+P + + QD +D
Sbjct: 117 LRGEVVSIK---IPFSGKPDPVITWQKGQDLID 146
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 590 TKAKVICKVL---TVIVEWFYNGKKL-PHGHRYRTFHDF--GIVILDILYCYEENSGVYE 643
+ A ++CKV IV+W+ GK++ G +YR +F G L I ++++ VY+
Sbjct: 20 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQ 78
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPEGMEGGLEKIQTLEDAAHLRRTETADIE 702
RATN+ GS ASL+ + LP+ +EG A H R E I+
Sbjct: 79 VRATNQGGSVSGTASLEVEVPAKI----HLPKTLEG--------MGAVHALRGEVVSIK 125
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 1739 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPD-IRYKTLEEDNL 1797
G + P F + + + A K++ V W + GK+II D ++Y+ E
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 1798 FTLLIIEAVVEDSG-AYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPT 1856
+ LII +V +D Y+ A N G A L V+ P
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI--------------HLPK 106
Query: 1857 VAEPLKDQNVKEGSAVTLKCRITGKP 1882
E + + G V++K +GKP
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKP 132
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 7 PNLKIEWFKNG---VPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
P ++W++ G + L RI+ F G L I S+ DD+ +Y +ATN G
Sbjct: 32 PKPIVKWYRQGKEIIADGLKYRIQE-FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90
Query: 64 TCTLKIE 70
T +L++E
Sbjct: 91 TASLEVE 97
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 1562 APVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNE--------------- 1606
AP F + V+ A +VTG+P+P V W G I+ +
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 1607 -IVRKITATETTEMEHKGKIQERVVDAS-----EKPAKP--PVFTKKIQPCRAFEQDQAR 1658
I+ +T + T + + Q V + E PAK P + + A +
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 121
Query: 1659 FEVEFDGDPLPTIKWFREDFPITSSPDFQ-IHTFSTKSILIMRQVFMEDSGVFAVIAENR 1717
++ F G P P I W + I ++ +Q I T S S++ V +D+G + V A+NR
Sbjct: 122 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 181
Query: 1718 GG 1719
G
Sbjct: 182 FG 183
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF--GF 973
AP F +L + + A C++T P V+W+ GK + A I +F G+
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 59
Query: 974 VILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQK 1033
L I V D+ +Y +ATN+ G + + L V+ I + + + A +
Sbjct: 60 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGA-----VHA 114
Query: 1034 LE-EALYRKDELIPDEEKPNPPVFTSQLQDNLD 1065
L E + K IP KP+P + + QD +D
Sbjct: 115 LRGEVVSIK---IPFSGKPDPVITWQKGQDLID 144
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 590 TKAKVICKVL---TVIVEWFYNGKKL-PHGHRYRTFHDF--GIVILDILYCYEENSGVYE 643
+ A ++CKV IV+W+ GK++ G +YR +F G L I ++++ VY+
Sbjct: 18 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQ 76
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPEGMEGGLEKIQTLEDAAHLRRTETADIE 702
RATN+ GS ASL+ + LP+ +EG A H R E I+
Sbjct: 77 VRATNQGGSVSGTASLEVEVPAKI----HLPKTLEG--------MGAVHALRGEVVSIK 123
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 1770 KPLDVYWLKNGKKIIPD-IRYKTLEEDNLFTLLIIEAVVEDSG-AYECVAMNNAGEARCE 1827
KP+ V W + GK+II D ++Y+ E + LII +V +D Y+ A N G
Sbjct: 31 KPI-VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT 89
Query: 1828 AELVVQSXXXXXXXXXXXXXXXXXDEAPTVAEPLKDQNVKEGSAVTLKCRITGKP 1882
A L V+ P E + + G V++K +GKP
Sbjct: 90 ASLEVEVPAKI--------------HLPKTLEGMGAVHALRGEVVSIKIPFSGKP 130
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 7 PNLKIEWFKNG---VPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
P ++W++ G + L RI+ F G L I S+ DD+ +Y +ATN G
Sbjct: 30 PKPIVKWYRQGKEIIADGLKYRIQE-FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 88
Query: 64 TCTLKIE 70
T +L++E
Sbjct: 89 TASLEVE 95
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 706 APVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFV 765
AP F+ S + D E F + + P ++ W NG+P++ R+ C+ G
Sbjct: 11 APSFS---SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVA 64
Query: 766 ILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQ 800
L I PED G Y+C A N G+ SA + V
Sbjct: 65 ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 44.3 bits (103), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 1735 GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRY-KTLE 1793
G G V PSF + + + GQ + T + WL NG+ I +Y ++
Sbjct: 4 GSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI----QYARSTC 59
Query: 1794 EDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
E + L I +A+ ED G Y C+A N G+ C A + V
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVI 975
AP F + D + E +C + T P +T W NG+ + ++ + G
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRIT--WLLNGQPIQYA---RSTCEAGVAE 65
Query: 976 LEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
L I D D G YTC A N G+ + S +TV
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 40.0 bits (92), Expect = 0.014, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGE 60
R P +I W NG P+ RST + G+ L I +D YTC A N LG+
Sbjct: 36 RGTPVPRITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQ 89
Score = 37.7 bits (86), Expect = 0.058, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 1699
P F+ ++ C E + G P+P I W PI + + + + L +
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAELHI 68
Query: 1700 RQVFMEDSGVFAVIAENRGGKAKCSANLVV 1729
+ ED G + +AEN G+ CSA + V
Sbjct: 69 QDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 1425 PRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVA 1484
P F + +K ++E Q +C + G P ++ W LNG+P+ + + G
Sbjct: 12 PSFSSVLK-DCAVIEGQDFVLQCSVR--GTPVPRITWLLNGQPIQYARS---TCEAGVAE 65
Query: 1485 MNFGWVYPEDSGEYLCRATNLYG 1507
++ PED G Y C A N G
Sbjct: 66 LHIQDALPEDHGTYTCLAENALG 88
Score = 36.2 bits (82), Expect = 0.20, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFIS 1113
P F+S L+D V E C + + P RI W NG+P ++ + G
Sbjct: 12 PSFSSVLKD-CAVIEGQDFVLQCSV--RGTPVPRITWLLNGQPI---QYARSTCEAGVAE 65
Query: 1114 LDMDYVYARDSGEYICRATNKWGTAMTKAKV 1144
L + D G Y C A N G A V
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
Score = 35.0 bits (79), Expect = 0.39, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 342 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 395
+ +L NG+PI+ + R+ G+ L I ED G YTC A N GQ S
Sbjct: 43 ITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCS 93
Score = 35.0 bits (79), Expect = 0.40, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 234 TLVPFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSG 293
T VP W +N +P+ ++T + G L I A ED G YT A N+ G + S
Sbjct: 38 TPVPRITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSA 94
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 1562 APVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
AP F S + V EG+ V G P PR+ WL+NG I
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 531 KSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMT 590
+ P RI W NG+P ++ + G L + D G Y C A N G
Sbjct: 36 RGTPVPRITWLLNGQPI---QYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSC 92
Query: 591 KAKV 594
A V
Sbjct: 93 SAWV 96
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 336 GDQTMTVEFLYNGKPIEASHRIRTV---HAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 392
G+ T ++ +L NG+ HRI + H +V+E + D G YTC NK+G
Sbjct: 41 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS--DRGNYTCVVENKFGSI 98
Query: 393 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----N 448
+ L+ +++S + P + + + + G F C + +D + ++W N
Sbjct: 99 RQTYTLDVLERSPHR-PILQAGLPANQTAVLGSDVEFHCKV--YSDAQPHIQWLKHVEVN 155
Query: 449 GKPIFHKNR--VKMVSDF------GFVVMDIAYVQSHDSGEYVCRAWN 488
G + V ++ + V + +A V D GEY+CRA N
Sbjct: 156 GSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATN 203
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 1064 LDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYAR 1122
L VP A V F C +PT I W NGR F R+ + SL M+ V
Sbjct: 25 LAVPAANTVRFRC--PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS 82
Query: 1123 DSGEYICRATNKWGTAMT--KAKVICKAKHDIVTESQLPDSMSA 1164
D G Y C NK+G+ V+ ++ H + ++ LP + +A
Sbjct: 83 DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 126
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 71/226 (31%), Gaps = 55/226 (24%)
Query: 926 LTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN-DFGFVILEINDVYLR 984
L + + F C +P+ ++ W NG+ RI I L + V
Sbjct: 25 LAVPAANTVRFRC--PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS 82
Query: 985 DSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDEL 1044
D G YTC NK G + L V
Sbjct: 83 DRGNYTCVVENKFGSIRQTYTLDVL----------------------------------- 107
Query: 1045 IPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFAT- 1099
E P+ P+ + L N V F C++ SD I W NG
Sbjct: 108 ---ERSPHRPILQAGLPANQTAVLGSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKVGPD 162
Query: 1100 GSRVKTVYDFGF-------ISLDMDYVYARDSGEYICRATNKWGTA 1138
G+ TV + L + V RD GEY+CRATN G A
Sbjct: 163 GTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA 208
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 34/191 (17%)
Query: 1655 DQARFEVEFDGDPLPTIKW------FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG 1708
+ RF G+P P+I W FR + I I + L+M V D G
Sbjct: 31 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG-----IKLRHQQWSLVMESVVPSDRG 85
Query: 1709 VFAVIAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAK 1765
+ + EN+ G + + L V E+ R + G+ P+ T + +G F K
Sbjct: 86 NYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL--PANQTAV------LGSDVEFHCK 137
Query: 1766 ISATKPLDVYWLK----NGKKIIPD-IRYKTLEEDNL-------FTLLIIEAVVEDSGAY 1813
+ + + WLK NG K+ PD Y T+ + + L + D G Y
Sbjct: 138 VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEY 197
Query: 1814 ECVAMNNAGEA 1824
C A N G A
Sbjct: 198 LCRATNFIGVA 208
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 67/193 (34%), Gaps = 26/193 (13%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV---KMVSDFGFVVMDIA 472
K L + ++ F C +P + W NG+ ++R+ K+ +VM+
Sbjct: 22 KKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME-- 77
Query: 473 YVQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCR 527
V D G Y C N H+ L + N V F C+
Sbjct: 78 SVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK 137
Query: 528 LEPKSDPTMRIDWF----FNGRPFAT-GSRVKTVYDFGF-------ISLDMDYVYARDSG 575
+ SD I W NG G+ TV + L + V RD G
Sbjct: 138 V--YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGG 195
Query: 576 EYICRATNKWGTA 588
EY+CRATN G A
Sbjct: 196 EYLCRATNFIGVA 208
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1761 RFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVV-EDSGAYECVAMN 1819
RF + + WLKNG++ + R ++ + L++E+VV D G Y CV N
Sbjct: 34 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 93
Query: 1820 NAGEAR 1825
G R
Sbjct: 94 KFGSIR 99
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 1483 VAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTG 1519
V + V D GEYLCRATN G+ E L G
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 64/182 (35%), Gaps = 42/182 (23%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFGYV-------ALDIVGAYAEDSGIYTVKATNSKGSA 289
P W N G +F+ H G + +L + D G YT N GS
Sbjct: 45 PSISWLKN------GREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI 98
Query: 290 TTSGTLKCLER----------LFVNHNYPLFSLQFQHLSNLSEGE-----IAHFE---AS 331
+ TL LER L N L S H S+ + + H E +
Sbjct: 99 RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK 158
Query: 332 LIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 391
+ P G +TV + + +EA R+R + D G Y CRATN G
Sbjct: 159 VGPDGTPYVTVLKSWISESVEADVRLR-----------LANVSERDGGEYLCRATNFIGV 207
Query: 392 AE 393
AE
Sbjct: 208 AE 209
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPI-YDFGYVAMNFGWVYPEDSGEYL 1499
+ +F C A G+P + W NG+ ++R I ++ V P D G Y
Sbjct: 31 NTVRFRCPAA--GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 1500 CRATNLYG 1507
C N +G
Sbjct: 89 CVVENKFG 96
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 27/195 (13%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 1711
+ +F G+P PT +W + + +I + ++ LI V D G +
Sbjct: 34 NTVKFRCPAGGNPXPTXRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIXESVVPSDKGNYT 91
Query: 1712 VIAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA 1768
+ EN G + +L V E+ R + G+ P+ +T+ VG F K+ +
Sbjct: 92 CVVENEYGSINHTYHLDVVERSPHRPILQAGL--PANASTV------VGGDVEFVCKVYS 143
Query: 1769 TKPLDVYWLK----NGKKIIPD-------IRYKTLEEDNLFTLLIIEAVVEDSGAYECVA 1817
+ W+K NG K PD +++ + N L + D+G Y C
Sbjct: 144 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV 203
Query: 1818 MNNAGEARCEAELVV 1832
N G+A A L V
Sbjct: 204 SNYIGQANQSAWLTV 218
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 70/218 (32%), Gaps = 56/218 (25%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T W NGK RI K N +I E V D G YTC N
Sbjct: 39 RCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXE--SVVPSDKGNYTCVVEN 96
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
++G + L V E P+ P+
Sbjct: 97 EYGSINHTYHLDVV--------------------------------------ERSPHRPI 118
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFF----NGRPFATGS--RVKTVYDF 1109
+ L N G V F C++ SD I W NG + +K +
Sbjct: 119 LQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 176
Query: 1110 GFIS-----LDMDYVYARDSGEYICRATNKWGTAMTKA 1142
G S L + V D+GEYIC+ +N G A A
Sbjct: 177 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSA 214
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 336 GDQTMTVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 390
G+ T +L NGK + HRI R H + ++ ++ + D G YTC N++G
Sbjct: 44 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH-WSLIXESVVPS---DKGNYTCVVENEYG 99
Query: 391 QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH--- 447
+ +L+ V++S +P + + GD F C + +D + ++W
Sbjct: 100 SINHTYHLDVVERSPHRPILQAGLPANASTVVGGD-VEFVCKV--YSDAQPHIQWIKHVE 156
Query: 448 --------NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 488
+G P + ++ V+ + V D+GEY+C+ N
Sbjct: 157 KNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 205
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 1422 KQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIY 1478
K+ P + K + +L + + KF C G+P W NGK ++R
Sbjct: 12 KRAPYWTNTEKXEKRLHAVPAANTVKFRCPAG--GNPXPTXRWLKNGKEFKQEHRIG--- 66
Query: 1479 DFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
GY N W V P D G Y C N YG
Sbjct: 67 --GYKVRNQHWSLIXESVVPSDKGNYTCVVENEYG 99
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 1066 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 1124
VP A V F C PT R W NG+ F R+ SL + V D
Sbjct: 30 VPAANTVKFRCPAGGNPXPTXR--WLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDK 87
Query: 1125 GEYICRATNKWGT--AMTKAKVICKAKHDIVTESQLPDSMS 1163
G Y C N++G+ V+ ++ H + ++ LP + S
Sbjct: 88 GNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAS 128
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 70/195 (35%), Gaps = 23/195 (11%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK--MVSDFGFVVMDIAY 473
K L + ++ F C +P W NGK ++R+ V + + ++ +
Sbjct: 25 KRLHAVPAANTVKFRCPAG--GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESV 82
Query: 474 VQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRL 528
V S D G Y C N N H+ L + N G V F C++
Sbjct: 83 VPS-DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKV 141
Query: 529 EPKSDPTMRIDWFF----NGRPFATGS--RVKTVYDFGFIS-----LDMDYVYARDSGEY 577
SD I W NG + +K + G S L + V D+GEY
Sbjct: 142 --YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEY 199
Query: 578 ICRATNKWGTAMTKA 592
IC+ +N G A A
Sbjct: 200 ICKVSNYIGQANQSA 214
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 968 INDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQ 1012
IN +L + +V D+G Y CK +N G+A S LTV +Q
Sbjct: 178 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 222
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 96/251 (38%), Gaps = 66/251 (26%)
Query: 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS----RIKTIND 970
++P + PTDL + ++ A C++ P T+EWF +G+ +S R++ +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 971 FGFVILEINDVYLRDSGLYTCKATNKHGEATT---SCKLTVKGRQGIDVEPQVSAIFANA 1027
F + +D G Y C A N+ G+A + S ++ V R VEP+ +
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL-RDDFRVEPKDT------ 118
Query: 1028 TKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMR 1087
+ K E AL +C PK P
Sbjct: 119 --RVAKGETAL-----------------------------------LECG-PPKGIPEPT 140
Query: 1088 IDWFFNGRP--------FATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAM 1139
+ W +G P F SRV+ V D G +L + V D G Y C A N GT
Sbjct: 141 LIWIKDGVPLDDLKAMSFGASSRVRIV-DGG--NLLISNVEPIDEGNYKCIAQNLVGTRE 197
Query: 1140 TK-AKVICKAK 1149
+ AK+I + K
Sbjct: 198 SSYAKLIVQVK 208
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 341 TVEFLYNGKPI----EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA---E 393
T+E+ +G+P+ + SHR++ + G K +D G Y C A N+ GQA
Sbjct: 40 TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH 99
Query: 394 ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI- 452
S+ + + PK T K G++A EC P PE + W +G P+
Sbjct: 100 ASLQIAVLRDDFRVEPKDTRVAK-------GETALLECG-PPKGIPEPTLIWIKDGVPLD 151
Query: 453 -------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 488
+RV++V D G ++ I+ V+ D G Y C A N
Sbjct: 152 DLKAMSFGASSRVRIV-DGGNLL--ISNVEPIDEGNYKCIAQN 191
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 524 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFG----FISLDMDYVYARDSGEYIC 579
+C++E K +PT I+WF +G P +T + F F M +D GEY C
Sbjct: 29 LNCKVEGKPEPT--IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 580 RATNKWGTAMTK 591
A N+ G A+++
Sbjct: 87 VAKNRVGQAVSR 98
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 23/99 (23%)
Query: 106 FDSPVFISHLNDVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNG 165
+ SP I H D+ K+NE +C+VE GK PE +EWF +G
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVE---------GK----------PEPTIEWFKDG 47
Query: 166 KPIF----HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 200
+P+ +RV+ F + + D GEY C
Sbjct: 48 EPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 25/191 (13%)
Query: 1657 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI-----MRQVFMEDSGVFA 1711
A + +G P PTI+WF++ P++++ + + H K + M+ +D G +
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTN-EKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW 85
Query: 1712 VIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK 1770
+A+NR G+A A+L + V+ F + G+ A +
Sbjct: 86 CVAKNRVGQAVSRHASLQI---------AVLRDDFRVEPKDTRVAKGETALLECGPPKGI 136
Query: 1771 P-LDVYWLKNGKKIIPDIRYKTLEEDNLF------TLLIIEAVVEDSGAYECVAMNNAGE 1823
P + W+K+G + D++ + + LLI D G Y+C+A N G
Sbjct: 137 PEPTLIWIKDGVPL-DDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGT 195
Query: 1824 ARCE-AELVVQ 1833
A+L+VQ
Sbjct: 196 RESSYAKLIVQ 206
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTL----SINSLRADDSAIYTCKATNLLGEAV 62
P IEWFK+G P+S + F L ++ + D Y C A N +G+AV
Sbjct: 37 PEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV 96
Query: 63 S 63
S
Sbjct: 97 S 97
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 56/155 (36%), Gaps = 49/155 (31%)
Query: 1453 GDPNMKVEWFLNGKPL------PHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLY 1506
G P +EWF +G+P+ H+ +F F Y M +D GEY C A N
Sbjct: 35 GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGK--KEQDGGEYWCVAKNRV 92
Query: 1507 GMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFV 1566
G +R AS Q ++ D+ F
Sbjct: 93 GQAVSR------------------------------HASLQIA---VLRDD-------FR 112
Query: 1567 SQPEAQKVQEGEPARF-CTRVTGYPRPRVMWLING 1600
+P+ +V +GE A C G P P ++W+ +G
Sbjct: 113 VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 724 NAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFG----FVILEISPVYPEDCGQ 779
N E + PT +EWF +G+P+ T + F F + +D G+
Sbjct: 30 NCKVEGKPEPT------IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGE 83
Query: 780 YSCRAYNDYGEAVTS-ASMKV 799
Y C A N G+AV+ AS+++
Sbjct: 84 YWCVAKNRVGQAVSRHASLQI 104
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 35/204 (17%)
Query: 1561 EAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI-VNE------------- 1606
++P + P V++ EPA +V G P P + W +G + NE
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 1607 -IVRKITA-TETTEMEHKGKIQERVVDASEKPAKPPV------FTKKIQPCRAFEQDQAR 1658
R + E E+ + RV A + A + F + + R + + A
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETAL 127
Query: 1659 FEV-EFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI--------LIMRQVFMEDSGV 1709
E G P PT+ W ++ P+ D + +F S L++ V D G
Sbjct: 128 LECGPPKGIPEPTLIWIKDGVPLD---DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGN 184
Query: 1710 FAVIAENRGGKAKCS-ANLVVEEK 1732
+ IA+N G + S A L+V+ K
Sbjct: 185 YKCIAQNLVGTRESSYAKLIVQVK 208
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 96/251 (38%), Gaps = 66/251 (26%)
Query: 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS----RIKTIND 970
++P + PTDL + ++ A C++ P T+EWF +G+ +S R++ +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 971 FGFVILEINDVYLRDSGLYTCKATNKHGEATT---SCKLTVKGRQGIDVEPQVSAIFANA 1027
F + +D G Y C A N+ G+A + S ++ V R VEP+ +
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL-RDDFRVEPKDT------ 118
Query: 1028 TKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMR 1087
+ K E AL +C PK P
Sbjct: 119 --RVAKGETAL-----------------------------------LECG-PPKGIPEPT 140
Query: 1088 IDWFFNGRP--------FATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAM 1139
+ W +G P F SRV+ V D G +L + V D G Y C A N GT
Sbjct: 141 LIWIKDGVPLDDLKAMSFGASSRVRIV-DGG--NLLISNVEPIDEGNYKCIAQNLVGTRE 197
Query: 1140 TK-AKVICKAK 1149
+ AK+I + K
Sbjct: 198 SSYAKLIVQVK 208
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 341 TVEFLYNGKPI----EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA---E 393
T+E+ +G+P+ + SHR++ + G K +D G Y C A N+ GQA
Sbjct: 40 TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH 99
Query: 394 ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI- 452
S+ + + PK T K G++A EC P PE + W +G P+
Sbjct: 100 ASLQIAVLRDDFRVEPKDTRVAK-------GETALLECG-PPKGIPEPTLIWIKDGVPLD 151
Query: 453 -------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 488
+RV++V D G ++ I+ V+ D G Y C A N
Sbjct: 152 DLKAMSFGASSRVRIV-DGGNLL--ISNVEPIDEGNYKCIAQN 191
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 524 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFG----FISLDMDYVYARDSGEYIC 579
+C++E K +PT I+WF +G P +T + F F M +D GEY C
Sbjct: 29 LNCKVEGKPEPT--IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Query: 580 RATNKWGTAMTK 591
A N+ G A+++
Sbjct: 87 VAKNRVGQAVSR 98
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 23/99 (23%)
Query: 106 FDSPVFISHLNDVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNG 165
+ SP I H D+ K+NE +C+VE GK PE +EWF +G
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVE---------GK----------PEPTIEWFKDG 47
Query: 166 KPIF----HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 200
+P+ +RV+ F + + D GEY C
Sbjct: 48 EPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 25/191 (13%)
Query: 1657 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI-----MRQVFMEDSGVFA 1711
A + +G P PTI+WF++ P++++ + + H K + M+ +D G +
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTN-EKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW 85
Query: 1712 VIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK 1770
+A+NR G+A A+L + V+ F + G+ A +
Sbjct: 86 CVAKNRVGQAVSRHASLQI---------AVLRDDFRVEPKDTRVAKGETALLECGPPKGI 136
Query: 1771 P-LDVYWLKNGKKIIPDIRYKTLEEDNLF------TLLIIEAVVEDSGAYECVAMNNAGE 1823
P + W+K+G + D++ + + LLI D G Y+C+A N G
Sbjct: 137 PEPTLIWIKDGVPL-DDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGT 195
Query: 1824 ARCE-AELVVQ 1833
A+L+VQ
Sbjct: 196 RESSYAKLIVQ 206
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTL----SINSLRADDSAIYTCKATNLLGEAV 62
P IEWFK+G P+S + F L ++ + D Y C A N +G+AV
Sbjct: 37 PEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV 96
Query: 63 S 63
S
Sbjct: 97 S 97
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 56/155 (36%), Gaps = 49/155 (31%)
Query: 1453 GDPNMKVEWFLNGKPL------PHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLY 1506
G P +EWF +G+P+ H+ +F F Y M +D GEY C A N
Sbjct: 35 GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGK--KEQDGGEYWCVAKNRV 92
Query: 1507 GMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFV 1566
G +R AS Q ++ D+ F
Sbjct: 93 GQAVSR------------------------------HASLQIA---VLRDD-------FR 112
Query: 1567 SQPEAQKVQEGEPARF-CTRVTGYPRPRVMWLING 1600
+P+ +V +GE A C G P P ++W+ +G
Sbjct: 113 VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 724 NAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFG----FVILEISPVYPEDCGQ 779
N E + PT +EWF +G+P+ T + F F + +D G+
Sbjct: 30 NCKVEGKPEPT------IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGE 83
Query: 780 YSCRAYNDYGEAVTS-ASMKV 799
Y C A N G+AV+ AS+++
Sbjct: 84 YWCVAKNRVGQAVSRHASLQI 104
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 35/204 (17%)
Query: 1561 EAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI-VNE------------- 1606
++P + P V++ EPA +V G P P + W +G + NE
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 1607 -IVRKITA-TETTEMEHKGKIQERVVDASEKPAKPPV------FTKKIQPCRAFEQDQAR 1658
R + E E+ + RV A + A + F + + R + + A
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETAL 127
Query: 1659 FEV-EFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI--------LIMRQVFMEDSGV 1709
E G P PT+ W ++ P+ D + +F S L++ V D G
Sbjct: 128 LECGPPKGIPEPTLIWIKDGVPLD---DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGN 184
Query: 1710 FAVIAENRGGKAKCS-ANLVVEEK 1732
+ IA+N G + S A L+V+ K
Sbjct: 185 YKCIAQNLVGTRESSYAKLIVQVK 208
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 10/200 (5%)
Query: 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP-DFQIHTFSTK- 1694
A P F ++++ Q A + G P P +KW+R+ I + ++I F
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 1695 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVI 1754
LI+ V +D+ V+ V A N+GG +A+L VE + + P L + +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK-----IHLPKTLEGMGAVHA 116
Query: 1755 NVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVE--DSGA 1812
G++ S KP V + G+ +I + + + FT L+ VE D+G
Sbjct: 117 LRGEVVSIKIPFSG-KPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 1813 YECVAMNNAGEARCEAELVV 1832
Y A N G + EL V
Sbjct: 176 YVVCAKNRFGIDQKTVELDV 195
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 1562 APVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNE--------------- 1606
AP F + V+ A +VTG+P+P V W G I+ +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 1607 -IVRKITATETTEMEHKGKIQERVVDAS-----EKPAKP--PVFTKKIQPCRAFEQDQAR 1658
I+ +T + T + + Q V + E PAK P + + A +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 1659 FEVEFDGDPLPTIKWFREDFPITSSPDFQ-IHTFSTKSILIMRQVFMEDSGVFAVIAENR 1717
++ F G P P I W + I ++ +Q I T S S++ V +D+G + V A+NR
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 1718 GG 1719
G
Sbjct: 184 FG 185
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF--GF 973
AP F +L + + A C++T P V+W+ GK + A I +F G+
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 974 VILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQK 1033
L I V D+ +Y +ATN+ G + + L V+ I + + + A +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGA-----VHA 116
Query: 1034 LE-EALYRKDELIPDEEKPNPPVFTSQLQDNLD 1065
L E + K IP KP+P + + QD +D
Sbjct: 117 LRGEVVSIK---IPFSGKPDPVITWQKGQDLID 146
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 590 TKAKVICKVL---TVIVEWFYNGKKL-PHGHRYRTFHDF--GIVILDILYCYEENSGVYE 643
+ A ++CKV IV+W+ GK++ G +YR +F G L I ++++ VY+
Sbjct: 20 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQ 78
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPEGMEGGLEKIQTLEDAAHLRRTETADIE 702
RATN+ GS ASL+ + LP+ +EG A H R E I+
Sbjct: 79 VRATNQGGSVSGTASLEVEVPAKI----HLPKTLEG--------MGAVHALRGEVVSIK 125
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 1739 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPD-IRYKTLEEDNL 1797
G + P F + + + A K++ V W + GK+II D ++Y+ E
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 1798 FTLLIIEAVVEDSG-AYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPT 1856
+ LII +V +D Y+ A N G A L V+ P
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI--------------HLPK 106
Query: 1857 VAEPLKDQNVKEGSAVTLKCRITGKP 1882
E + + G V++K +GKP
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKP 132
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 7 PNLKIEWFKNG---VPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
P ++W++ G + L RI+ F G L I S+ DD+ +Y +ATN G
Sbjct: 32 PKPIVKWYRQGKEIIADGLKYRIQE-FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90
Query: 64 TCTLKIE 70
T +L++E
Sbjct: 91 TASLEVE 97
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIR-YKTLEEDNLFTLL 1801
P I S + G A F ++ + W KNG KI R Y EDN+ L+
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 65
Query: 1802 IIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
I + EDS + A+N AGE A L+VQ+
Sbjct: 66 IRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Query: 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFV 974
+AP+ T+ + + AHF R+ DP EW+ NG + RI V
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPE--CEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 975 I-LEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGR 1011
L I DV DS KA N GE ++ L V+ +
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTF-DFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTC 65
P+ + EW+KNGV + RI + + + L I + +DSA KA N+ GE S
Sbjct: 33 PDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHA 92
Query: 66 TLKIEDR 72
L ++ +
Sbjct: 93 FLLVQAK 99
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 721 EGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVI-LEISPVYPEDCGQ 779
+G +AHF R+ DP+ EW+ NG ++ R + V L I V ED
Sbjct: 19 QGSDAHFRVRVVGKPDPEC--EWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS 76
Query: 780 YSCRAYNDYGEAVTSASMKVQGK 802
+A N GE + A + VQ K
Sbjct: 77 IMVKAINIAGETSSHAFLLVQAK 99
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 1561 EAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
EAP + ++Q V +G A F RV G P P W NG I
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI 46
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-- 1696
P +F ++IQ + A F V G P P +W++ I S +I+ + +
Sbjct: 6 PKIF-ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD--RIYWYWPEDNVC 62
Query: 1697 -LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 1732
L++R V EDS V A N G+ A L+V+ K
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 91/266 (34%), Gaps = 36/266 (13%)
Query: 1638 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP------------------TIKWFREDFP 1679
+P T + CR F + E +G+P+ + W + D
Sbjct: 7 QPAAHTGAARSCR-FRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSA 65
Query: 1680 ITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGG 1739
T + + ++ L + EDSG + N K S L V E
Sbjct: 66 RTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPF 125
Query: 1740 VVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFT 1799
+ P LT +S V+ L+ F + K + W K+ + D K L
Sbjct: 126 ISYPQILTLSTSGVLVCPDLSEFTRDKTDVK---IQWYKDSLLLDKD-NEKFLSVRGTTH 181
Query: 1800 LLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTVAE 1859
LL+ + +ED+G Y CV + A E + + P +
Sbjct: 182 LLVHDVALEDAGYYRCV-LTFAHEGQ---------QYNITRSIELRIKKKKEETIPVIIS 231
Query: 1860 PLKDQNVKEGSAVTLKCRI---TGKP 1882
PLK + GS +T+ C++ TG P
Sbjct: 232 PLKTISASLGSRLTIPCKVFLGTGTP 257
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex
In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 64/180 (35%), Gaps = 47/180 (26%)
Query: 1425 PRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPH-KNRFNPIYDFGYV 1483
P F+ T + ++ + G P + W+ G LP K +F +F
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE---NFNK- 275
Query: 1484 AMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREME 1543
A+ V EDSGEY C A+N G
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMG------------------------------------ 299
Query: 1544 ASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
S +HT V K AP ++ +P+ + GE R R G P+P V W++NG +
Sbjct: 300 -SIRHTISVRV-----KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPL 353
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVI 975
AP +L P +L LA CR +P TV+W NG+ L + G I
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRAN--GNPKPTVQWMVNGEPLQSAPPNPNREVAGDTI 369
Query: 976 LEINDVYLRDSGLYTCKATNKHG 998
+ D + +Y C +N+HG
Sbjct: 370 I-FRDTQISSRAVYQCNTSNEHG 391
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 25/144 (17%)
Query: 1743 PSFL---TTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFT 1799
PSF+ T SS ++ G + S D+ W K G + D K E+
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD---KAKFENFNKA 276
Query: 1800 LLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTVAE 1859
L I EDSG Y C+A N G R + V++ AP +
Sbjct: 277 LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA-------------------APYWLD 317
Query: 1860 PLKDQNVKEGSAVTLKCRITGKPR 1883
K+ + G L CR G P+
Sbjct: 318 EPKNLILAPGEDGRLVCRANGNPK 341
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 367 VLEILGTKIEDTGVYTCRATNKWGQAE--ISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 424
L I ED+G Y C A+NK G ISV ++ P + K+L L G
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA-------PYWLDEPKNLI-LAPG 327
Query: 425 DSAHFECTLTPVNDPELKVEWFHNGKPI 452
+ C +P+ V+W NG+P+
Sbjct: 328 EDGRLVCRAN--GNPKPTVQWMVNGEPL 353
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPF--ATGSRVKTVYDFG 1110
PP T Q + V + +C E K +P W N R F A RV G
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIEC--EAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG 73
Query: 1111 FISLDMDYVYARDS--GEYICRATNKWGTAMT 1140
+ +D + GEY C A NK+GTA++
Sbjct: 74 TLVIDFRSGGRPEEYEGEYQCFARNKFGTALS 105
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 1084 PTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAK 1143
PT I W+ G + K ++ +L + V DSGEY C A+NK G+
Sbjct: 250 PTPDIAWYKKGGDLPSD---KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306
Query: 1144 VICKA 1148
V KA
Sbjct: 307 VRVKA 311
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 27/188 (14%)
Query: 314 FQHLSNL--SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA------SHRIRTVHAFGM 365
+H S+L S+GE A G T T+E+ G+ +E SHR+
Sbjct: 13 VEHPSDLIVSKGEPATLNCKA--EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLF 70
Query: 366 VVLEILGTKIE-DTGVYTCRATNKWGQA-EISVNLECV---DKSKGQPPKFTSHIKSLEG 420
+ + G K D GVY C A N G+A +LE D + P +
Sbjct: 71 FLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAV----- 125
Query: 421 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSG 480
G+ A EC P PE + W +G P+ K+ + ++ G +M I Y + D+G
Sbjct: 126 ---GEPAVMECQ-PPRGHPEPTISWKKDGSPLDDKD--ERITIRGGKLM-ITYTRKSDAG 178
Query: 481 EYVCRAWN 488
+YVC N
Sbjct: 179 KYVCVGTN 186
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 1657 ARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHT--FSTKSILIMRQVFME----DSGV 1709
A + +G P PTI+W++ + T D + H + S+ +R V D GV
Sbjct: 27 ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86
Query: 1710 FAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA 1768
+ +A N G+A A+L V ++ F S ++ VG+ A + +
Sbjct: 87 YVCVARNYLGEAVSHDASLEV---------AILRDDFRQNPSDVMVAVGEPAVMECQPPR 137
Query: 1769 TKP-LDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCE 1827
P + W K+G + T+ L +I D+G Y CV N GE E
Sbjct: 138 GHPEPTISWKKDGSPLDDKDERITIRGGKL---MITYTRKSDAGKYVCVGTNMVGERESE 194
Query: 1828 -AELVV 1832
AEL V
Sbjct: 195 VAELTV 200
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 84/233 (36%), Gaps = 66/233 (28%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIND----FG 972
P + P+DL +++ A C+ P+ T+EW+ G+ R++T D
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAE--GRPTPTIEWYKGGE------RVETDKDDPRSHR 61
Query: 973 FVILEINDVYLR---------DSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAI 1023
++ + +LR D G+Y C A N GEA +
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS--------------------- 100
Query: 1024 FANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSD 1083
+ LE A+ R D+ + NP S + + P +C+ P+
Sbjct: 101 ------HDASLEVAILR------DDFRQNP----SDVMVAVGEPAV----MECQ-PPRGH 139
Query: 1084 PTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWG 1136
P I W +G P T+ + + Y D+G+Y+C TN G
Sbjct: 140 PEPTISWKKDGSPLDDKDERITIRGGKLM---ITYTRKSDAGKYVCVGTNMVG 189
Score = 37.0 bits (84), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILE 977
+F P+D+ +A A EC+ P P T+ W +G L TI +I
Sbjct: 113 DFRQNPSDVMVAVGEPAVMECQ-PPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMI-- 169
Query: 978 INDVYLR--DSGLYTCKATNKHGEATTS-CKLTV 1008
Y R D+G Y C TN GE + +LTV
Sbjct: 170 ---TYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 1742 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKI-----IPDIRYKTLEEDN 1796
PP + S +++ G+ A + K + W K G+++ P L +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 1797 LFTLLIIEAVVE--DSGAYECVAMNNAGEA 1824
LF L I+ D G Y CVA N GEA
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 3 PRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGE 60
PR P I W K+G PL R T G L I R D+ Y C TN++GE
Sbjct: 136 PRGHPEPTISWKKDGSPLDDKDE-RITIRGG--KLMITYTRKSDAGKYVCVGTNMVGE 190
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 72/203 (35%), Gaps = 66/203 (32%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLR-------ADDSAIYTCKATNLLG 59
P IEW+K G + + L + S+ LR D +Y C A N LG
Sbjct: 37 PTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
Query: 60 EAVSTCTLKIEDRHWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVE 119
EAVS D+ + ++ L D
Sbjct: 97 EAVS------------------------------------------HDASLEVAILRD-- 112
Query: 120 CKENENVHFDCRVEPSKDATMKIGK--LLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 177
D R PS D + +G+ ++ P PE + W +G P+ K+ + +
Sbjct: 113 ---------DFRQNPS-DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD--ERI 160
Query: 178 SDFGFVVMDIAYVQSHDSGEYVC 200
+ G +M I Y + D+G+YVC
Sbjct: 161 TIRGGKLM-ITYTRKSDAGKYVC 182
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 65/189 (34%), Gaps = 18/189 (9%)
Query: 408 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK--------PIFHKNRVK 459
PP+ H L + G+ A C P +EW+ G+ P H+ +
Sbjct: 9 PPRIVEHPSDLI-VSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 460 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEA 519
S F F+ + D G YVC A N I Q+ DV A
Sbjct: 66 SGSLF-FLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 520 --GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEY 577
+C+ P+ P I W +G P T+ + + Y D+G+Y
Sbjct: 125 VGEPAVMECQ-PPRGHPEPTISWKKDGSPLDDKDERITIRGGKLM---ITYTRKSDAGKY 180
Query: 578 ICRATNKWG 586
+C TN G
Sbjct: 181 VCVGTNMVG 189
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 1445 FECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATN 1504
ECQ P G P + W +G PL K+ I + + D+G+Y+C TN
Sbjct: 131 MECQ-PPRGHPEPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTN 186
Query: 1505 LYGMDET 1511
+ G E+
Sbjct: 187 MVGERES 193
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS-RIKTIND-FG 972
+AP F+ P + E EC+++ P + W N + + + RI D G
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLF--WKRNNEMVQFNTDRISLYQDNTG 71
Query: 973 FVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGR 1011
V L I DV +D+G YT A N+ G T + +L V R
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNL--FTL 1800
P F+ S + G + + +ISA P ++W +N + + + +L +DN TL
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 1801 LIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
LI + +D+G Y A+N AG C L V +
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 1560 KEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEM 1619
K AP+F+ +P+++KV EG+ + +++ P P++ W N NE+V+ T +
Sbjct: 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRN-----NEMVQFNTDRISLYQ 67
Query: 1620 EHKGKIQERVVDASEKPA 1637
++ G++ + D ++K A
Sbjct: 68 DNTGRVTLLIKDVNKKDA 85
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 1638 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKSI 1696
+ P+F K Q + E D + E + P P + W R + + + D ++ +T +
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 1697 -LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 1732
L+++ V +D+G + V A N G C+ L V +
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 423 DGDSAHFECTLTPVNDPELKVEWFHNGKPI-FHKNRVKMVSD-FGFVVMDIAYVQSHDSG 480
+GDS EC ++ + P K+ W N + + F+ +R+ + D G V + I V D+G
Sbjct: 29 EGDSVKLECQISAI--PPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 481 EYVCRAWN 488
Y A N
Sbjct: 87 WYTVSAVN 94
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 1692 STKSILIM--RQVFMEDSGVFAVIAENRGGKAK-CSA-NLVVEEKRQGGRGGVVPPSFLT 1747
ST ILIM + ++D G + +A++R K + C L V E+ V P+
Sbjct: 620 STNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER--------VAPTITG 671
Query: 1748 TISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVV 1807
+ + ++G+ S P + W K+ + ++ D + +D L I
Sbjct: 672 NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED--SGIVLKDGNRNLTIRRVRK 729
Query: 1808 EDSGAYECVAMNNAGEARCEAELVVQ 1833
ED G Y C A + G A+ EA +++
Sbjct: 730 EDEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
Query: 264 ALDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEG 323
L I G D G+YT A++ + S ++ E+ FV F + L + G
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV-----AFGSGMESLVEATVG 345
Query: 324 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 383
E A + G +++ NG P+E++H I+ H VL I+ DTG YT
Sbjct: 346 ERVRIPAKYL--GYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTV 398
Query: 384 RATNKWGQAEISVNLECVDKSKGQPPKF--TSHIKSLEGLKDGDSAHFECTLTPVNDPEL 441
TN + + S V PP+ S I ++ + G + CT+ + P
Sbjct: 399 ILTNPISKEKQS---HVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPH- 454
Query: 442 KVEWF 446
+ W+
Sbjct: 455 HIHWY 459
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 1714
++ R ++ G P P IKW++ P+ S+ HT +L + +V D+G + VI
Sbjct: 346 ERVRIPAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVIL 400
Query: 1715 ENRGGKAKCS--ANLVVEEKRQGGRGGVVPP 1743
N K K S +LVV Q G ++ P
Sbjct: 401 TNPISKEKQSHVVSLVVYVPPQIGEKSLISP 431
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 82/404 (20%), Positives = 141/404 (34%), Gaps = 61/404 (15%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLK 296
P +W+ N PL + K H L I+ D+G YTV TN S +
Sbjct: 360 PEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Query: 297 CL--------ERLFVNHNYPLFSLQFQHLSNLS------------------EGEIAHFEA 330
+ E+ ++ P+ S Q+ L+ E E A+ +
Sbjct: 415 LVVYVPPQIGEKSLIS---PVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPS 471
Query: 331 SLIPVGD-----QTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCR 384
+ V + + +VE G IE + ++ + V ++ + +Y C
Sbjct: 472 QAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCE 531
Query: 385 ATNKWGQAE--ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT-------- 434
A NK G+ E IS ++ + QP + +S+ D + FE LT
Sbjct: 532 AVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFE-NLTWYKLGPQP 590
Query: 435 -PVNDPELKVEWFHNGKPIFHKNRVKMV-SDFGFVVMDIAYVQSHDSGEYVCRAWNNXXX 492
P++ EL N ++ N S ++M++ D G+YVC A +
Sbjct: 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTK 650
Query: 493 XXXXXXXXXHQIRLPSPS----QDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFA 548
+ +P+ +N + C +P +I WF +
Sbjct: 651 KRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSC--TASGNPPPQIMWFKDNETLV 708
Query: 549 TGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKA 592
S + V G +L + V D G Y C+A + G A +A
Sbjct: 709 EDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEA 750
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEA 61
+P +I WFK+ L S I G L+I +R +D +YTC+A ++LG A
Sbjct: 692 GNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA 746
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVI------LEINDVYLRDSGLY 989
E T + +P + WF + + L + D G V+ L I V D GLY
Sbjct: 684 IEVSCTASGNPPPQIMWFKDNETL--------VEDSGIVLKDGNRNLTIRRVRKEDEGLY 735
Query: 990 TCKATNKHGEATTSCKLTVKGRQ 1012
TC+A + G A ++G Q
Sbjct: 736 TCQACSVLGCAKVEAFFIIEGAQ 758
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Query: 265 LDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGE 324
L I G D G+YT A++ + S ++ E+ FV F + L + GE
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV-----AFGSGMESLVEATVGE 216
Query: 325 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 384
A + G +++ NG P+E++H I+ H VL I+ DTG YT
Sbjct: 217 RVRIPAKYL--GYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVI 269
Query: 385 ATNKWGQAEISVNLECVDKSKGQPPKF--TSHIKSLEGLKDGDSAHFECTLTPVNDPELK 442
TN + + S V PP+ S I ++ + G + CT+ + P
Sbjct: 270 LTNPISKEKQS---HVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPH-H 325
Query: 443 VEWF 446
+ W+
Sbjct: 326 IHWY 329
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 1714
++ R ++ G P P IKW++ P+ S+ HT +L + +V D+G + VI
Sbjct: 216 ERVRIPAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVIL 270
Query: 1715 ENRGGKAKCS--ANLVVEEKRQGGRGGVVPP 1743
N K K S +LVV Q G ++ P
Sbjct: 271 TNPISKEKQSHVVSLVVYVPPQIGEKSLISP 301
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 119/324 (36%), Gaps = 68/324 (20%)
Query: 1431 IKTQDQLVEMQSTKFECQLAPVGDPNMK-VEWFL-NGKPL-PHKNRFNPIY-DFGYVAMN 1486
+ +Q ++ +S F CQ+A GD K + WF NG+ L P++ R + ++ D +
Sbjct: 8 VPSQGEISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLT 65
Query: 1487 FGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASW 1546
+D+G Y C T G +S+ +K +K+
Sbjct: 66 IYNANIDDAGIYKCVVTAEDGT-----------------QSEATVNVKIFQKL------- 101
Query: 1547 QHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIV-- 1604
+F + P Q+ +EGE A V P ++W G ++
Sbjct: 102 -----------------MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK 144
Query: 1605 ----------NEI-VRKITATETTEMEHKGKIQER----VVDASEKPAKPPVFTKK--IQ 1647
N + +R I T+ +G+I R D PP + I
Sbjct: 145 KDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIV 204
Query: 1648 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIHTFSTKSI-LIMRQVFME 1705
A + DG P PT+ W ++ PI D + H FS S L +R V
Sbjct: 205 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN 264
Query: 1706 DSGVFAVIAENRGGKAKCSANLVV 1729
D + IAEN+ G+ S +L V
Sbjct: 265 DEAEYVCIAENKAGEQDASIHLKV 288
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 85/234 (36%), Gaps = 34/234 (14%)
Query: 368 LEILGTKIEDTGVYTCRATNKWG-QAEISVNLECVDKS--KGQPPKFTSHIKSLEGLKDG 424
L I I+D G+Y C T + G Q+E +VN++ K K P + + K+G
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP--------TPQEFKEG 115
Query: 425 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQ-----SHDS 479
+ A C + P + W H G+ + K V+ F+V+ Y+Q D
Sbjct: 116 EDAVIVCDVVSSLPP--TIIWKHKGRDVILKKDVR------FIVLSNNYLQIRGIKKTDE 167
Query: 480 GEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAG-----KVHFDCRLEPKSDP 534
G Y C + +P Q + A V C + +P
Sbjct: 168 GTYRCEG-RILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226
Query: 535 TMRIDWFFNGRPFATGSR--VKTVYDFGFISLDMDYVYARDSGEYICRATNKWG 586
TM W +G P K ++ L + V D EY+C A NK G
Sbjct: 227 TMS--WTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAG 278
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 1750 SSAVINVGQLARFDAKISA-TKPLDVYWLK-NGKKIIPDIRYKTL--EEDNLFTLLIIEA 1805
S I+VG+ F +++ K D+ W NG+K+ P+ + ++ +D+ TL I A
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 1806 VVEDSGAYECVAMNNAG 1822
++D+G Y+CV G
Sbjct: 70 NIDDAGIYKCVVTAEDG 86
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor
2 In Complex With Fgf1
Length = 216
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 29/197 (14%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFA 1711
+ +F G+P PT +W + + +I + ++ LI V D G +
Sbjct: 27 NTVKFRCPAGGNPXPTXRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIXESVVPSDKGNYT 84
Query: 1712 VIAENRGGKAKCSANLVVEEK---RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA 1768
+ EN G + +L V E+ R + G+ P+ +T+ VG F K+ +
Sbjct: 85 CVVENEYGSINHTYHLDVVERSPHRPILQAGL--PANASTV------VGGDVEFVCKVYS 136
Query: 1769 TKPLDVYWLK----NGKKIIPD-IRY-KTLEEDNLFT-------LLIIEAVVEDSGAYEC 1815
+ W+K NG K PD + Y K L+ + T L I ED+G Y C
Sbjct: 137 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 196
Query: 1816 VAMNNAGEARCEAELVV 1832
+A N+ G + A L V
Sbjct: 197 LAGNSIGISFHSAWLTV 213
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 71/220 (32%), Gaps = 58/220 (26%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T W NGK RI K N +I E V D G YTC N
Sbjct: 32 RCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXE--SVVPSDKGNYTCVVEN 89
Query: 996 KHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055
++G + L V E P+ P+
Sbjct: 90 EYGSINHTYHLDVV--------------------------------------ERSPHRPI 111
Query: 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF----FNGRPFATGS--RVKTVYDF 1109
+ L N G V F C++ SD I W NG + +K +
Sbjct: 112 LQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 1110 GFISLD--MDYVYAR-----DSGEYICRATNKWGTAMTKA 1142
G + D ++ +Y R D+GEY C A N G + A
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSA 209
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 25/172 (14%)
Query: 336 GDQTMTVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 390
G+ T +L NGK + HRI R H + ++ ++ + D G YTC N++G
Sbjct: 37 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH-WSLIXESVVPS---DKGNYTCVVENEYG 92
Query: 391 QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH--- 447
+ +L+ V++S + P + + + G F C + +D + ++W
Sbjct: 93 SINHTYHLDVVERSPHR-PILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVE 149
Query: 448 --------NGKPIFHKNRVKMV--SDFGFVVMDIAYVQSHDSGEYVCRAWNN 489
+G P + V +D V+ I V D+GEY C A N+
Sbjct: 150 KNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 201
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 1066 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 1124
VP A V F C PT R W NG+ F R+ SL + V D
Sbjct: 23 VPAANTVKFRCPAGGNPXPTXR--WLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDK 80
Query: 1125 GEYICRATNKWGTA--MTKAKVICKAKHDIVTESQLPDSMS 1163
G Y C N++G+ V+ ++ H + ++ LP + S
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAS 121
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 13/73 (17%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGW------VYPED 1494
+ KF C G+P W NGK ++R GY N W V P D
Sbjct: 27 NTVKFRCPAG--GNPXPTXRWLKNGKEFKQEHRIG-----GYKVRNQHWSLIXESVVPSD 79
Query: 1495 SGEYLCRATNLYG 1507
G Y C N YG
Sbjct: 80 KGNYTCVVENEYG 92
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 25/197 (12%)
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK--MVSDFGFVVMDIAY 473
K L + ++ F C +P W NGK ++R+ V + + ++ +
Sbjct: 18 KRLHAVPAANTVKFRCPAG--GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESV 75
Query: 474 VQSHDSGEYVCRAWN-----NXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRL 528
V S D G Y C N N H+ L + N G V F C++
Sbjct: 76 VPS-DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKV 134
Query: 529 EPKSDPTMRIDWFF----NGRPFATGS--RVKTVYDFGFISLD--MDYVYAR-----DSG 575
SD I W NG + +K + G + D ++ +Y R D+G
Sbjct: 135 --YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAG 192
Query: 576 EYICRATNKWGTAMTKA 592
EY C A N G + A
Sbjct: 193 EYTCLAGNSIGISFHSA 209
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 1445 FECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATN 1504
F C+ + G P + WF NGK + ++ I + + D G Y+CRATN
Sbjct: 118 FSCRAS--GSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATN 173
Query: 1505 LYGMDETRAILKT 1517
G DE +A L+
Sbjct: 174 KAGEDEKQAFLQV 186
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995
F CR + + +P+++ WF NGK + K I L + ++ D G Y C+ATN
Sbjct: 118 FSCRASGSPEPAIS--WFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYVCRATN 173
Query: 996 KHGE 999
K GE
Sbjct: 174 KAGE 177
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 23/183 (12%)
Query: 414 HIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM---- 469
+ S + K G+ A C ++ + P V W ++H V +SD F ++
Sbjct: 7 EVVSPQEFKQGEDAEVVCRVS--SSPAPAVSW------LYHNEEVTTISDNRFAMLANNN 58
Query: 470 -DIAYVQSHDSGEYVCRAWNNXXXXX-----XXXXXXXHQIRLPSPSQDNLDVPEAGKVH 523
I + D G Y C I +P S N ++
Sbjct: 59 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSF-NATAERGEEMT 117
Query: 524 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATN 583
F CR +P I WF NG+ K + L + + D G Y+CRATN
Sbjct: 118 FSCRASGSPEPA--ISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYVCRATN 173
Query: 584 KWG 586
K G
Sbjct: 174 KAG 176
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFI 1112
P + Q N ++ F CR +P I WF NG+ K +
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPA--ISWFRNGKLIEENE--KYILKGSNT 152
Query: 1113 SLDMDYVYARDSGEYICRATNKWG 1136
L + + D G Y+CRATNK G
Sbjct: 153 ELTVRNIINSDGGPYVCRATNKAG 176
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 21/177 (11%)
Query: 1572 QKVQEGEPARFCTRVTGYPRPRVMWLINGH--TIVNEIVRKITATETTEMEHKGKIQE-- 1627
Q+ ++GE A RV+ P P V WL + T +++ + A ++ + K E
Sbjct: 12 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 71
Query: 1628 -----RVVDASEKPAKPPVFTKKIQPCRAFEQ----------DQARFEVEFDGDPLPTIK 1672
RV E + + + P + Q ++ F G P P I
Sbjct: 72 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 131
Query: 1673 WFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 1729
WFR I + + + +T+ L +R + D G + A N+ G+ + A L V
Sbjct: 132 WFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 707 PVFTVPLSNIDDLRE-GENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFV 765
P ++P + + E GE F R + + +P + WF NGK ++ ++
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPA--ISWFRNGKLIEENEKY--ILKGSNT 152
Query: 766 ILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKV 799
L + + D G Y CRA N GE A ++V
Sbjct: 153 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 1741 VPPSFLTTISS--AVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLF 1798
VPP+ S A G+ F + S + + W +NGK I + +Y L+ N
Sbjct: 95 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-ILKGSNT- 152
Query: 1799 TLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
L + + D G Y C A N AGE +A L V
Sbjct: 153 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 603 VEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+ WF NGK + +Y + + + +I+ + G Y CRATNK G D +A L+
Sbjct: 130 ISWFRNGKLIEENEKYILKGSNTELTVRNII---NSDGGPYVCRATNKAGEDEKQAFLQ 185
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 274 DSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSE-GEIAHFEASL 332
D GIY +G G + + + + + P S+ + + +E GE F S
Sbjct: 68 DEGIY-----RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTF--SC 120
Query: 333 IPVGDQTMTVEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 391
G + + NGK IE + + I + V I+ + D G Y CRATNK G+
Sbjct: 121 RASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS---DGGPYVCRATNKAGE 177
Query: 392 AE 393
E
Sbjct: 178 DE 179
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 945 DPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSC 1004
D S V W+ + L + + + G IL + D+ D G Y CK N +GE ++
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88
Query: 1005 KLTVKG 1010
+L VKG
Sbjct: 89 ELFVKG 94
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 736 DPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSA 795
D +V W++ + ++ ++ + G IL + + D G Y C+ NDYGE + A
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88
Query: 796 SMKVQGKR 803
+ V+G R
Sbjct: 89 ELFVKGVR 96
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 593 KVICKV----LTVIVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
K +CK+ + V W++ ++L + +Y ++ G+ IL + + + G Y C+ N
Sbjct: 20 KYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVN 79
Query: 649 KYGSDVTKASL 659
YG D + A L
Sbjct: 80 DYGEDSSYAEL 90
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 1068 EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEY 1127
E G V + C++E D + ++ W+F R + + Y+ G L + + D G Y
Sbjct: 15 EGGHVKYVCKIE-NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTY 73
Query: 1128 ICRATNKWGTAMTKAKVICKA 1148
C+ N +G + A++ K
Sbjct: 74 RCKVVNDYGEDSSYAELFVKG 94
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 518 EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEY 577
E G V + C++E D + ++ W+F R + + Y+ G L + + D G Y
Sbjct: 15 EGGHVKYVCKIE-NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTY 73
Query: 578 ICRATNKWGTAMTKAKVICK 597
C+ N +G + A++ K
Sbjct: 74 RCKVVNDYGEDSSYAELFVK 93
Score = 34.3 bits (77), Expect = 0.71, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 1444 KFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRAT 1503
K+ C++ D + +V W+ + L + ++ Y+ G + + D G Y C+
Sbjct: 20 KYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVV 78
Query: 1504 NLYGMDETRAILKTTG 1519
N YG D + A L G
Sbjct: 79 NDYGEDSSYAELFVKG 94
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 1756 VGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYEC 1815
V ++ +D T V L+N +K Y+ ED + L + + D G Y C
Sbjct: 22 VCKIENYDQSTQVTWYFGVRQLENSEK------YEITYEDGVAILYVKDITKLDDGTYRC 75
Query: 1816 VAMNNAGEARCEAELVVQ 1833
+N+ GE AEL V+
Sbjct: 76 KVVNDYGEDSSYAELFVK 93
Score = 30.4 bits (67), Expect = 9.1, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 337 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 391
DQ+ V + + + +E S + + G+ +L + D G Y C+ N +G+
Sbjct: 29 DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE 83
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 24/169 (14%)
Query: 1665 GDPLPTIKWFR--EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 1722
G P P+ +W++ E + LI++ +EDSG + + N G
Sbjct: 244 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 303
Query: 1723 CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKK 1782
L V P S + ++ G+ A F + + V W+K+GK
Sbjct: 304 VETVLTV----------TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKA 353
Query: 1783 IIPDIRYKTLEEDNLFTLLIIEAVV-EDSGAYECVAMNNAGEARCEAEL 1830
I + ++L IE+V ED G Y+C N+ A AEL
Sbjct: 354 I-----------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 49/135 (36%), Gaps = 20/135 (14%)
Query: 265 LDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGE 324
L I A EDSG Y NS G + L L + P ++ F G
Sbjct: 278 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--------GR 329
Query: 325 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 384
A F G+ TV ++ +GK I S VL I K ED G+Y C
Sbjct: 330 PAVFTCQY--TGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCF 377
Query: 385 ATNKWGQAEISVNLE 399
N AE S L+
Sbjct: 378 VRNDRESAEASAELK 392
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 1799 TLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTVA 1858
TL+I +AVVEDSG Y CV N+ G E L V + + PT
Sbjct: 277 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI------------DPPT-- 322
Query: 1859 EPLKDQNVKEGSAVTLKCRITGKPRK 1884
Q V G C+ TG P K
Sbjct: 323 -----QTVDFGRPAVFTCQYTGNPIK 343
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 934 AHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993
A F C+ T +P TV W +GKA+ + L I V D G+Y C
Sbjct: 331 AVFTCQYT--GNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFV 378
Query: 994 TNKHGEATTSCKL 1006
N A S +L
Sbjct: 379 RNDRESAEASAEL 391
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 28/158 (17%)
Query: 1588 GYPRPRVMW--LINGHT-----IVNEIVRKITAT---ETTEMEHKGK----IQERVVDAS 1633
G+P P W I G T ++N+ V++++ T + +E GK + V S
Sbjct: 244 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 303
Query: 1634 EKPA---KPPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH 1689
+ P+ K P + + + A F ++ G+P+ T+ W ++ I S
Sbjct: 304 VETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------ 357
Query: 1690 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 1727
+S+L + V ED G++ N A+ SA L
Sbjct: 358 ----ESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 43/134 (32%), Gaps = 44/134 (32%)
Query: 1493 EDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQ 1552
EDSG+YLC N G + +L T
Sbjct: 286 EDSGKYLCVVNNSVGGESVETVLTVTA--------------------------------- 312
Query: 1553 LVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKIT 1612
P A + P Q V G PA F + TG P V W+ +G I + +
Sbjct: 313 ------PLSAKI---DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--ESVL 361
Query: 1613 ATETTEMEHKGKIQ 1626
E+ + E KG Q
Sbjct: 362 RIESVKKEDKGMYQ 375
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 63/188 (33%), Gaps = 46/188 (24%)
Query: 505 RLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG----RPFATGSRVKTVYDFG 560
R P+ Q L++ A + C + P+ R F G + RVK V
Sbjct: 219 RTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG-- 276
Query: 561 FISLDMDYVYARDSGEYICRATNKWG----------TAMTKAKVICKVLTV--------- 601
+L + DSG+Y+C N G TA AK+ TV
Sbjct: 277 --TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 334
Query: 602 ---------IVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
V W +GK + H +L I +E+ G+Y+C N S
Sbjct: 335 CQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRES 384
Query: 653 DVTKASLK 660
A LK
Sbjct: 385 AEASAELK 392
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 909 IEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTND-PSMTVEWFH------NGKALSA 961
I + P + P +L +A H L P P+ + W+ +A+
Sbjct: 213 ISSSAPRTPALVQKPLELMVA-----HTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL 267
Query: 962 GSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVS 1021
R+K ++ L I D + DSG Y C N G + LTV ++P
Sbjct: 268 NDRVKQVSG----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ 323
Query: 1022 AI 1023
+
Sbjct: 324 TV 325
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 24/169 (14%)
Query: 1665 GDPLPTIKWFR--EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 1722
G P P+ +W++ E + LI++ +EDSG + + N G
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 297
Query: 1723 CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKK 1782
L V P S + ++ G+ A F + + V W+K+GK
Sbjct: 298 VETVLTV----------TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKA 347
Query: 1783 IIPDIRYKTLEEDNLFTLLIIEAVV-EDSGAYECVAMNNAGEARCEAEL 1830
I + ++L IE+V ED G Y+C N+ A AEL
Sbjct: 348 I-----------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 49/135 (36%), Gaps = 20/135 (14%)
Query: 265 LDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGE 324
L I A EDSG Y NS G + L L + P ++ F G
Sbjct: 272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--------GR 323
Query: 325 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 384
A F G+ TV ++ +GK I S VL I K ED G+Y C
Sbjct: 324 PAVFTCQY--TGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCF 371
Query: 385 ATNKWGQAEISVNLE 399
N AE S L+
Sbjct: 372 VRNDRESAEASAELK 386
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 1799 TLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTVA 1858
TL+I +AVVEDSG Y CV N+ G E L V + + PT
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI------------DPPT-- 316
Query: 1859 EPLKDQNVKEGSAVTLKCRITGKPRK 1884
Q V G C+ TG P K
Sbjct: 317 -----QTVDFGRPAVFTCQYTGNPIK 337
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 934 AHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993
A F C+ T +P TV W +GKA+ + L I V D G+Y C
Sbjct: 325 AVFTCQYT--GNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFV 372
Query: 994 TNKHGEATTSCKL 1006
N A S +L
Sbjct: 373 RNDRESAEASAEL 385
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 28/158 (17%)
Query: 1588 GYPRPRVMW--LINGHT-----IVNEIVRKITAT---ETTEMEHKGK----IQERVVDAS 1633
G+P P W I G T ++N+ V++++ T + +E GK + V S
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 297
Query: 1634 EKPA---KPPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH 1689
+ P+ K P + + + A F ++ G+P+ T+ W ++ I S
Sbjct: 298 VETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------ 351
Query: 1690 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 1727
+S+L + V ED G++ N A+ SA L
Sbjct: 352 ----ESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 43/134 (32%), Gaps = 44/134 (32%)
Query: 1493 EDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQ 1552
EDSG+YLC N G + +L T
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVLTVTA--------------------------------- 306
Query: 1553 LVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKIT 1612
P A + P Q V G PA F + TG P V W+ +G I + +
Sbjct: 307 ------PLSAKI---DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--ESVL 355
Query: 1613 ATETTEMEHKGKIQ 1626
E+ + E KG Q
Sbjct: 356 RIESVKKEDKGMYQ 369
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 63/188 (33%), Gaps = 46/188 (24%)
Query: 505 RLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG----RPFATGSRVKTVYDFG 560
R P+ Q L++ A + C + P+ R F G + RVK V
Sbjct: 213 RTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG-- 270
Query: 561 FISLDMDYVYARDSGEYICRATNKWG----------TAMTKAKVICKVLTV--------- 601
+L + DSG+Y+C N G TA AK+ TV
Sbjct: 271 --TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 328
Query: 602 ---------IVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
V W +GK + H +L I +E+ G+Y+C N S
Sbjct: 329 CQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRES 378
Query: 653 DVTKASLK 660
A LK
Sbjct: 379 AEASAELK 386
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 909 IEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTND-PSMTVEWFH------NGKALSA 961
I + P + P +L +A H L P P+ + W+ +A+
Sbjct: 207 ISSSAPRTPALVQKPLELMVA-----HTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL 261
Query: 962 GSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVS 1021
R+K ++ L I D + DSG Y C N G + LTV ++P
Sbjct: 262 NDRVKQVSG----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ 317
Query: 1022 AI 1023
+
Sbjct: 318 TV 319
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 69/188 (36%), Gaps = 23/188 (12%)
Query: 421 LKDGDSAHFECTLTPVNDPELKVEW-FHNGKPI----FHKNRVKMVSD---FGFVVMDIA 472
+ + +S CT + + P +VEW F G ++ +D F + +
Sbjct: 13 VPENESIKLTCTYSGFSSP--RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFS 70
Query: 473 YVQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRL---E 529
V D+GEY C + H L PS+ + VP + + L E
Sbjct: 71 SVTRKDNGEYTCMV--SEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSE 128
Query: 530 PKSDPTMRIDWFFNGRPFATGSRVKT--------VYDFGFISLDMDYVYARDSGEYICRA 581
P WF +G T KT D L D V A DSGEY C+A
Sbjct: 129 HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQA 188
Query: 582 TNKWGTAM 589
N +GTAM
Sbjct: 189 QNGYGTAM 196
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 376 EDTGVYTCRATNKWGQ--AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTL 433
+D G YTC + + GQ E+S++L + P K T + S + G+ A C+
Sbjct: 75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLVP----PSKPTISVPS--SVTIGNRAVLTCSE 128
Query: 434 TPVNDPELKVEWFHNGKPIF----HKNRVKMVSDF------GFVVMDIAYVQSHDSGEYV 483
P + WF +G + K R M S F G ++ D V + DSGEY
Sbjct: 129 HD-GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP--VTAFDSGEYY 185
Query: 484 CRAWNN 489
C+A N
Sbjct: 186 CQAQNG 191
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 737 PKLKVEWFWNGKPMKTGS--RFRTFCDFGFVI------LEISPVYPEDCGQYSCRAYNDY 788
P + WF +G M T + R F + F I L PV D G+Y C+A N Y
Sbjct: 133 PPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 192
Query: 789 GEAVTS 794
G A+ S
Sbjct: 193 GTAMRS 198
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 23/151 (15%)
Query: 1690 TFSTKSILIMRQVFMEDSGVFAVIAENRGGK--AKCSANLVVEEKRQGGRGGVVPPSFLT 1747
TFS+ I V +D+G + + GG+ + S +L V +VPPS T
Sbjct: 61 TFSSSGI-TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV----------LVPPSKPT 109
Query: 1748 TISSAVINVGQLARFD-AKISATKPLDVYWLKNGKKII-PDIRYKTLEEDNLFTL----- 1800
+ + +G A ++ + P + W K+G ++ D + ++ FT+
Sbjct: 110 ISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSG 169
Query: 1801 -LIIEAVVE-DSGAYECVAMNNAGEA-RCEA 1828
LI + V DSG Y C A N G A R EA
Sbjct: 170 DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEA 200
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 1079 EPKSDPTMRIDWFFNGRPFATGSRVKT--------VYDFGFISLDMDYVYARDSGEYICR 1130
E P WF +G T KT D L D V A DSGEY C+
Sbjct: 128 EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQ 187
Query: 1131 ATNKWGTAM 1139
A N +GTAM
Sbjct: 188 AQNGYGTAM 196
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 24/167 (14%)
Query: 1667 PLPTIKWFR--EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 1724
P P+ +W++ E + LI++ +EDSG + + N G
Sbjct: 243 PTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE 302
Query: 1725 ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKII 1784
L V P S + ++ G+ A F + + V W+K+GK I
Sbjct: 303 TVLTV----------TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI- 351
Query: 1785 PDIRYKTLEEDNLFTLLIIEAVV-EDSGAYECVAMNNAGEARCEAEL 1830
+ ++L IE+V ED G Y+C N+ A AEL
Sbjct: 352 ----------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 388
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 49/135 (36%), Gaps = 20/135 (14%)
Query: 265 LDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSNLSEGE 324
L I A EDSG Y NS G + L L + P ++ F G
Sbjct: 275 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF--------GR 326
Query: 325 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 384
A F G+ TV ++ +GK I S VL I K ED G+Y C
Sbjct: 327 PAVFTCQY--TGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCF 374
Query: 385 ATNKWGQAEISVNLE 399
N AE S L+
Sbjct: 375 VRNDRESAEASAELK 389
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 1799 TLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTVA 1858
TL+I +AVVEDSG Y CV N+ G E L V + + PT
Sbjct: 274 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI------------DPPT-- 319
Query: 1859 EPLKDQNVKEGSAVTLKCRITGKPRK 1884
Q V G C+ TG P K
Sbjct: 320 -----QTVDFGRPAVFTCQYTGNPIK 340
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 934 AHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993
A F C+ T +P TV W +GKA+ + L I V D G+Y C
Sbjct: 328 AVFTCQYT--GNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFV 375
Query: 994 TNKHGEATTSCKL 1006
N A S +L
Sbjct: 376 RNDRESAEASAEL 388
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 43/134 (32%), Gaps = 44/134 (32%)
Query: 1493 EDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQ 1552
EDSG+YLC N G + +L T
Sbjct: 283 EDSGKYLCVVNNSVGGESVETVLTVTA--------------------------------- 309
Query: 1553 LVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKIT 1612
P A + P Q V G PA F + TG P V W+ +G I + +
Sbjct: 310 ------PLSAKI---DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--ESVL 358
Query: 1613 ATETTEMEHKGKIQ 1626
E+ + E KG Q
Sbjct: 359 RIESVKKEDKGMYQ 372
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 28/157 (17%)
Query: 1589 YPRPRVMW--LINGHT-----IVNEIVRKITAT---ETTEMEHKGK----IQERVVDASE 1634
YP P W I G T ++N+ V++++ T + +E GK + V S
Sbjct: 242 YPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 301
Query: 1635 KPA---KPPVFTKKIQPCRAFEQDQ-ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT 1690
+ P+ K P + + + A F ++ G+P+ T+ W ++ I S
Sbjct: 302 ETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------- 354
Query: 1691 FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 1727
+S+L + V ED G++ N A+ SA L
Sbjct: 355 ---ESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 388
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 59/186 (31%), Gaps = 46/186 (24%)
Query: 507 PSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG----RPFATGSRVKTVYDFGFI 562
P +DV A C + P+ R F G + RVK V
Sbjct: 218 PQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSG---- 273
Query: 563 SLDMDYVYARDSGEYICRATNKWG----------TAMTKAKVICKVLTV----------- 601
+L + DSG+Y+C N G TA AK+ TV
Sbjct: 274 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 333
Query: 602 -------IVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
V W +GK + H +L I +E+ G+Y+C N S
Sbjct: 334 YTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAE 383
Query: 655 TKASLK 660
A LK
Sbjct: 384 ASAELK 389
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 1396 IQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDP 1455
I ++++K+ + Y D ++ + QP RF+ + ++ E QS F C++ P
Sbjct: 455 ISNYSSLRKHRPQEYSIRDAFWDRSEAQP-RFIVK-PYGTEVGEGQSANFYCRVIASSPP 512
Query: 1456 NMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAIL 1515
V W + + L ++ Y+ + V +D GEY RA N YG E L
Sbjct: 513 --VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
Query: 1516 KTT 1518
T
Sbjct: 571 NVT 573
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIK---TINDFGF 973
P F+ P + E A+F CR+ ++ P +T W + + L + ND+G
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVT--WHKDDRELKQSVKYMKRYNGNDYG- 539
Query: 974 VILEINDVYLRDSGLYTCKATNKHG 998
L IN V D G YT +A N +G
Sbjct: 540 --LTINRVKGDDKGEYTVRAKNSYG 562
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLI 1802
P F+ + GQ A F ++ A+ P V W K+ +++ ++Y N + L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 1803 IEAVVEDSGAYECVAMNNAG 1822
+D G Y A N+ G
Sbjct: 543 NRVKGDDKGEYTVRAKNSYG 562
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 515 DVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDS 574
+V E +F CR+ S P + W + R + Y+ L ++ V D
Sbjct: 493 EVGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDK 550
Query: 575 GEYICRATNKWGT 587
GEY RA N +GT
Sbjct: 551 GEYTVRAKNSYGT 563
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 1065 DVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDS 1124
+V E +F CR+ S P + W + R + Y+ L ++ V D
Sbjct: 493 EVGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDK 550
Query: 1125 GEYICRATNKWGT 1137
GEY RA N +GT
Sbjct: 551 GEYTVRAKNSYGT 563
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 718 DLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDC 777
++ EG++A+F R+ + P V W + + +K ++ + L I+ V +D
Sbjct: 493 EVGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDK 550
Query: 778 GQYSCRAYNDYG 789
G+Y+ RA N YG
Sbjct: 551 GEYTVRAKNSYG 562
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 1530 PKGMKSIEKIREMEASWQHTPEQL-VED---EKPKEAPVFVSQPEAQKVQEGEPARFCTR 1585
P+ + + +I + +H P++ + D ++ + P F+ +P +V EG+ A F R
Sbjct: 446 PEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCR 505
Query: 1586 VTGYPRPRVMW 1596
V P V W
Sbjct: 506 VIASSPPVVTW 516
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein
Kinase And Immunoglobulin Domains
Length = 491
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 1396 IQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDP 1455
I ++++K+ + Y D ++ + QP RF+ + ++ E QS F C++ P
Sbjct: 349 ISNYSSLRKHRPQEYSIRDAFWDRSEAQP-RFIVK-PYGTEVGEGQSANFYCRVIASSPP 406
Query: 1456 NMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAIL 1515
V W + + L ++ Y+ + V +D GEY RA N YG E L
Sbjct: 407 --VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 464
Query: 1516 KTT 1518
T
Sbjct: 465 NVT 467
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIK---TINDFGF 973
P F+ P + E A+F CR+ ++ P +T W + + L + ND+G
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVT--WHKDDRELKQSVKYMKRYNGNDYG- 433
Query: 974 VILEINDVYLRDSGLYTCKATNKHG 998
L IN V D G YT +A N +G
Sbjct: 434 --LTINRVKGDDKGEYTVRAKNSYG 456
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLI 1802
P F+ + GQ A F ++ A+ P V W K+ +++ ++Y N + L I
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 1803 IEAVVEDSGAYECVAMNNAG 1822
+D G Y A N+ G
Sbjct: 437 NRVKGDDKGEYTVRAKNSYG 456
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 515 DVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDS 574
+V E +F CR+ S P + W + R + Y+ L ++ V D
Sbjct: 387 EVGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDK 444
Query: 575 GEYICRATNKWGT 587
GEY RA N +GT
Sbjct: 445 GEYTVRAKNSYGT 457
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 1065 DVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDS 1124
+V E +F CR+ S P + W + R + Y+ L ++ V D
Sbjct: 387 EVGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDK 444
Query: 1125 GEYICRATNKWGT 1137
GEY RA N +GT
Sbjct: 445 GEYTVRAKNSYGT 457
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 721 EGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQY 780
EG++A+F R+ + P V W + + +K ++ + L I+ V +D G+Y
Sbjct: 390 EGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 447
Query: 781 SCRAYNDYG 789
+ RA N YG
Sbjct: 448 TVRAKNSYG 456
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 1530 PKGMKSIEKIREMEASWQHTPEQL-VED---EKPKEAPVFVSQPEAQKVQEGEPARFCTR 1585
P+ + + +I + +H P++ + D ++ + P F+ +P +V EG+ A F R
Sbjct: 340 PEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCR 399
Query: 1586 VTGYPRPRVMW 1596
V P V W
Sbjct: 400 VIASSPPVVTW 410
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 38/223 (17%)
Query: 238 FTEWFVNNKPLPAGAKFKTTH--DFGY---VALDIVGAYAEDSGIYTVKATNSKGSATTS 292
++ W N K+ + H DF Y L I A DSG++ A N+ GSA +
Sbjct: 218 YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT 277
Query: 293 GTLKCLERLFVNHNYPLFSLQFQHLSNLSEGE----IAHFEASLIPVGDQTMTVEFLYNG 348
TL+ +++ F+N +P+ + +++GE I +EA P Q + + +
Sbjct: 278 TTLEVVDKGFINI-FPMINTTVF----VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD 332
Query: 349 K-----PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 403
K E IR V + L+ GT + G YT +N A I+ N+ K
Sbjct: 333 KWEDYPKSENESNIRYVSELHLTRLK--GT---EGGTYTFLVSNSDVNAAIAFNVYVNTK 387
Query: 404 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWF 446
P+ ++ + + G+ +A F PE ++W+
Sbjct: 388 -----PEILTYDRLVNGMLQCVAAGF---------PEPTIDWY 416
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 36 TLSINSLRADDSAIYTCKATNLLGEAVSTCTLKIEDRHWL 75
TL+I+S R +DS ++ C A N G A T TL++ D+ ++
Sbjct: 249 TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI 288
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 970 DFGF---VILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQV-SAIFA 1025
DF + L I+ + DSG++ C A N G A + L V + I++ P + + +F
Sbjct: 241 DFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFV 300
Query: 1026 NATKNIQKLEE 1036
N +N+ + E
Sbjct: 301 NDGENVDLIVE 311
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 38/223 (17%)
Query: 238 FTEWFVNNKPLPAGAKFKTTH--DFGY---VALDIVGAYAEDSGIYTVKATNSKGSATTS 292
++ W N K+ + H DF Y L I A DSG++ A N+ GSA +
Sbjct: 243 YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT 302
Query: 293 GTLKCLERLFVNHNYPLFSLQFQHLSNLSEGE----IAHFEASLIPVGDQTMTVEFLYNG 348
TL+ +++ F+N +P+ + +++GE I +EA P Q + + +
Sbjct: 303 TTLEVVDKGFINI-FPMINTTVF----VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD 357
Query: 349 K-----PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 403
K E IR V + L+ GT + G YT +N A I+ N+ K
Sbjct: 358 KWEDYPKSENESNIRYVSELHLTRLK--GT---EGGTYTFLVSNSDVNAAIAFNVYVNTK 412
Query: 404 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWF 446
P+ ++ + + G+ +A F PE ++W+
Sbjct: 413 -----PEILTYDRLVNGMLQCVAAGF---------PEPTIDWY 441
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 36 TLSINSLRADDSAIYTCKATNLLGEAVSTCTLKIEDRHWL 75
TL+I+S R +DS ++ C A N G A T TL++ D+ ++
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI 313
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 970 DFGF---VILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQV-SAIFA 1025
DF + L I+ + DSG++ C A N G A + L V + I++ P + + +F
Sbjct: 266 DFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFV 325
Query: 1026 NATKNIQKLEE 1036
N +N+ + E
Sbjct: 326 NDGENVDLIVE 336
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 21/181 (11%)
Query: 1652 FEQDQARFEVEFDGDPLPTIKWFR--EDFPIT---SSPDFQIHTFST--KSILIMRQVFM 1704
+E Q + +G+P+P I W R + F T S D +I S L ++ V +
Sbjct: 13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 1705 EDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDA 1764
DSG + A +R G + S L +E P F++ + G
Sbjct: 73 SDSGRYDCEAASRIGGHQKSMYLDIE----------YAPKFISNQTIYYSWEGNPINISC 122
Query: 1765 KISATKPLDVYWLKNGKKIIP---DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNA 1821
+ + P ++W ++ K ++P KT L I D G Y C A N+
Sbjct: 123 DVKSNPPASIHWRRD-KLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHI 181
Query: 1822 G 1822
G
Sbjct: 182 G 182
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 356 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHI 415
RI G L I K+ D+G Y C A ++ G + S+ L+ PKF S+
Sbjct: 53 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI-----EYAPKFISN- 106
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDFGFVVMDIAY 473
+++ +G+ + C + ++P + W + + KN +K S ++++IA
Sbjct: 107 QTIYYSWEGNPINISCDVK--SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAP 164
Query: 474 VQSHDSGEYVCRAWNN 489
+D G Y C A N+
Sbjct: 165 TSDNDFGRYNCTATNH 180
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 902 GHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA 961
GH++ + D+ AP+F++ T E + C + ++P ++ W + L A
Sbjct: 88 GHQKSMYL--DIEYAPKFISNQTIYYSWEGNPINISCDVK--SNPPASIHWRRDKLVLPA 143
Query: 962 G--SRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHG 998
+ +KT + +ILEI D G Y C ATN G
Sbjct: 144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 749 PMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYG 789
P K + +T+ +ILEI+P D G+Y+C A N G
Sbjct: 142 PAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 960 SAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
S RI+ G L I DV L DSG Y C+A ++ G S L ++
Sbjct: 49 SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 346 YN--GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLECVD 402
YN G+ I ++ R+ L I IED G+Y C+AT+ GQ E +V LE
Sbjct: 36 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 95
Query: 403 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS 462
K + + S + K G+ A C ++ + P V W ++H V +S
Sbjct: 96 KLTFR------EVVSPQEFKQGEDAEVVCRVS--SSPAPAVSW------LYHNEEVTTIS 141
Query: 463 DFGFVVM 469
D F ++
Sbjct: 142 DNRFAML 148
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 20/136 (14%)
Query: 1748 TISSAVINVGQLARFDAKISATKPLDVYWLK-NGKKIIPDIRYKTLEEDNLFTLLIIEAV 1806
++S ++VG+ ++F + +P + W G+KII R +E L I A
Sbjct: 8 SLSKVELSVGE-SKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN 66
Query: 1807 VEDSGAYECVAMNNAGEARCEAELVVQSXXXXXXXXXXXXXXXXXDEAPTVAEPLKDQNV 1866
+ED+G Y C A + G+ + EA +V++ + T E + Q
Sbjct: 67 IEDAGIYRCQATDAKGQTQ-EATVVLEIY-----------------QKLTFREVVSPQEF 108
Query: 1867 KEGSAVTLKCRITGKP 1882
K+G + CR++ P
Sbjct: 109 KQGEDAEVVCRVSSSP 124
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 39.7 bits (91), Expect = 0.017, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA-GSRIKTINDFGFVI 975
P P + T+A C T P T+ W +G +S SRIK + + +
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSC--VATGSPVPTILWRKDGVLVSTQDSRIKQLENG---V 63
Query: 976 LEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEP 1018
L+I L D+G YTC A+ GEAT S + V+ G+ V+P
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ-EFGVPVQP 105
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 1724
G P+PTI W R+D + S+ D +I +L +R + D+G + IA G+A S
Sbjct: 34 GSPVPTILW-RKDGVLVSTQDSRIKQLEN-GVLQIRYAKLGDTGRYTCIASTPSGEATWS 91
Query: 1725 ANLVVEE 1731
A + V+E
Sbjct: 92 AYIEVQE 98
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 27/192 (14%)
Query: 948 MTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN-KHGEATTSCKL 1006
+ V W HNG A+ R+KT + L+IN+ D G Y + + K G T
Sbjct: 138 LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT---- 193
Query: 1007 TVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDV 1066
+D+ Q + A Q+L++A + N L D + +
Sbjct: 194 -------VDLSGQA---YDEAYAEFQRLKQAAI---------AEKNRARVLGGLPDVVTI 234
Query: 1067 PEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFIS-LDMDYVYARDSG 1125
E ++ C + DP + W N + A+ ++ G + ++ V DSG
Sbjct: 235 QEGKALNLTCNVW--GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSG 292
Query: 1126 EYICRATNKWGT 1137
+Y NK+G+
Sbjct: 293 KYGLVVKNKYGS 304
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 24/170 (14%)
Query: 440 ELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC--------------- 484
+LKV W HNG I + +RVK + + I +D G+YV
Sbjct: 137 DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 196
Query: 485 ------RAWNNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRI 538
A+ ++ R+ D + + E ++ C + DP +
Sbjct: 197 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEV 254
Query: 539 DWFFNGRPFATGSRVKTVYDFGFIS-LDMDYVYARDSGEYICRATNKWGT 587
W N + A+ ++ G + ++ V DSG+Y NK+G+
Sbjct: 255 SWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 304
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 21/151 (13%)
Query: 1456 NMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAIL 1515
++KV W NG + + +R + + P D G+Y+ D
Sbjct: 137 DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL-----FDGKTGHQ 191
Query: 1516 KTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQ 1575
KT G Y+ E A +Q + + ++ A V P+ +Q
Sbjct: 192 KTVDLSGQAYD--------------EAYAEFQRLKQAAIAEKN--RARVLGGLPDVVTIQ 235
Query: 1576 EGEPARFCTRVTGYPRPRVMWLINGHTIVNE 1606
EG+ V G P P V WL N + ++
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASD 266
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFG-FVILEINDV 981
P +T+ E + C + DP V W N KAL++ + G IN V
Sbjct: 229 PDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGV 286
Query: 982 YLRDSGLYTCKATNKHGEATTSCKLTV 1008
DSG Y NK+G T+ ++V
Sbjct: 287 STADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 156 ELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCQWF 203
+LKV W HNG I + +RVK + + I +D G+YV + F
Sbjct: 137 DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 184
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 1770 KPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAE 1829
K + W K+ ++I D ++ +D + TLLI E +D+G YE + ++ G+ + +
Sbjct: 35 KETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 92
Query: 1830 LV 1831
LV
Sbjct: 93 LV 94
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 21/181 (11%)
Query: 1652 FEQDQARFEVEFDGDPLPTIKWFR--EDFPIT---SSPDFQIHTFST--KSILIMRQVFM 1704
+E Q + +G+P+P I W R + F T S D +I S L ++ V +
Sbjct: 13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 1705 EDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDA 1764
DSG + A +R G + S L +E P F++ + G
Sbjct: 73 SDSGRYDCEAASRIGGHQKSMYLDIE----------YAPKFISNQTIYYSWEGNPINISC 122
Query: 1765 KISATKPLDVYWLKNGKKIIP---DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNA 1821
+ + P ++W ++ K ++P KT L I D G Y C A N+
Sbjct: 123 DVKSNPPASIHWRRD-KLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHI 181
Query: 1822 G 1822
G
Sbjct: 182 G 182
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 356 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHI 415
RI G L I K+ D+G Y C A ++ G + S+ L+ PKF S+
Sbjct: 53 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI-----EYAPKFISN- 106
Query: 416 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDFGFVVMDIAY 473
+++ +G+ + C + ++P + W + + KN +K S ++++IA
Sbjct: 107 QTIYYSWEGNPINISCDVK--SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAP 164
Query: 474 VQSHDSGEYVCRAWNN 489
+D G Y C A N+
Sbjct: 165 TSDNDFGRYNCTATNH 180
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 902 GHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA 961
GH++ + D+ AP+F++ T E + C + ++P ++ W + L A
Sbjct: 88 GHQKSMYL--DIEYAPKFISNQTIYYSWEGNPINISCDVK--SNPPASIHWRRDKLVLPA 143
Query: 962 --GSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHG 998
+ +KT + +ILEI D G Y C ATN G
Sbjct: 144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 749 PMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYG 789
P K + +T+ +ILEI+P D G+Y+C A N G
Sbjct: 142 PAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 960 SAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
S RI+ G L I DV L DSG Y C+A ++ G S L ++
Sbjct: 49 SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 107/553 (19%), Positives = 188/553 (33%), Gaps = 116/553 (20%)
Query: 13 WFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCTLKIEDR 72
W+ N L + R++ G TL++ ++ +D+A Y C+ N + S +
Sbjct: 144 WWVNNQSLPVSPRLQ--LSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVI----- 196
Query: 73 HWLLNKSLRPDALPLIEDLEKPKEVRKDEPELVFDSPVFISHLNDVECKENENVHFDCRV 132
LN PDA P I SP+ S+ + EN++ C
Sbjct: 197 ---LNVLYGPDA-PTI-------------------SPLNTSY------RSGENLNLSCHA 227
Query: 133 EPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQS 192
++P + WF NG F ++ ++ I +
Sbjct: 228 -------------------ASNPPAQYSWFVNGT--FQQSTQELF---------IPNITV 257
Query: 193 HDSGEYVCQWFVNN------------------KPLPAGAKFKTTHDFGYVALDIELMLKT 234
++SG Y CQ ++ KP D VAL E ++
Sbjct: 258 NNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN 317
Query: 235 LVPFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGT 294
W+VNN+ LP + + ++D L ++ D G Y N
Sbjct: 318 TTYL--WWVNNQSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQN---------- 363
Query: 295 LKCLERLFVNHNYPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS 354
L V+H+ P+ L + I+ P + +++ N P + S
Sbjct: 364 -----ELSVDHSDPVI---LNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASN-PPAQYS 414
Query: 355 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW-GQAEISVNLECVDKSKGQPPKFTS 413
I L I +++G+YTC+A N G + +V V +P ++
Sbjct: 415 WLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSN 474
Query: 414 HIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAY 473
+ K +E D D+ F C N L W+ NG+ + R+++ + G + +
Sbjct: 475 NSKPVE---DKDAVAFTCEPEAQNTTYL---WWVNGQSLPVSPRLQLSN--GNRTLTLFN 526
Query: 474 VQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSD 533
V +D+ YVC N+ +P D + + S+
Sbjct: 527 VTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASN 586
Query: 534 PTMRIDWFFNGRP 546
P+ + W NG P
Sbjct: 587 PSPQYSWRINGIP 599
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 22/192 (11%)
Query: 421 LKDGDSAHFECTLTPVNDPELKVEW-FHNG---KPIFHKNRVKMVSD--FGFVVMDIAY- 473
+ + + C + + P +VEW F G + + + N++ + F+ I +
Sbjct: 16 IPENNPVKLSCAYSGFSSP--RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73
Query: 474 -VQSHDSGEYVCRAWNNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRL---E 529
V D+G Y C + I L PS+ +++P + + L E
Sbjct: 74 SVTREDTGTYTCMV--SEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE 131
Query: 530 PKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLD-------MDYVYARDSGEYICRAT 582
P WF +G T + + L+ D + A D+GEY C A
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
Query: 583 NKWGTAMTKAKV 594
N +GT MT V
Sbjct: 192 NGYGTPMTSNAV 203
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 737 PKLKVEWFWNGKPMKTGSR-FRTFCDFGFVI------LEISPVYPEDCGQYSCRAYNDYG 789
P + WF +G M T + R F + +V+ L P+ D G+YSC A N YG
Sbjct: 136 PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG 195
Query: 790 EAVTSASMKVQG 801
+TS +++++
Sbjct: 196 TPMTSNAVRMEA 207
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 25/164 (15%)
Query: 336 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA--E 393
GD T V YN K I AS+ R F + EDTG YTC + + G + E
Sbjct: 43 GDTTRLV--CYNNK-ITASYEDRVT--FLPTGITFKSVTREDTGTYTCMVSEEGGNSYGE 97
Query: 394 ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI- 452
+ V L + P K T +I S + G+ A C+ P + WF +G +
Sbjct: 98 VKVKLIVLVP----PSKPTVNIPSSATI--GNRAVLTCSEQD-GSPPSEYTWFKDGIVMP 150
Query: 453 --------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 488
F + + G +V D + + D+GEY C A N
Sbjct: 151 TNPKSTRAFSNSSYVLNPTTGELVFDP--LSASDTGEYSCEARN 192
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 1114 LDMDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148
L D + A D+GEY C A N +GT MT V +A
Sbjct: 173 LVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 826 PVYPEDCGQYSCRAYNDYGEAVTSASMKVQG 856
P+ D G+YSC A N YG +TS +++++
Sbjct: 177 PLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 36 TLSINSLRADDSAIYTCKATNLLGEAVSTCTLKIEDR 72
TL+I+S R DDS ++ C A N G A T TLK+ ++
Sbjct: 253 TLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 368 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 403
L I +++D+GV+ C A N +G A ++ L+ V+K
Sbjct: 254 LTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 259 DFGYV---ALDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLER 300
DF Y L I A +DSG++ A N+ GSA + TLK +E+
Sbjct: 245 DFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 1636 PAKPPV--FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST 1693
P K PV F+KK + A FE E + + ++W R I++S + + T T
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGV-KVRWQRGGSDISASNKYGLATEGT 61
Query: 1694 KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 1731
+ L +R+V D G +AVIA G +K +L V E
Sbjct: 62 RHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVIE 95
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 27/192 (14%)
Query: 948 MTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA-TNKHGEATTSCKL 1006
+ V W HNG A+ R+KT + L+IN+ D G Y + K G T
Sbjct: 33 LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT---- 88
Query: 1007 TVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDV 1066
+D+ Q + A Q+L++A EK V L D + +
Sbjct: 89 -------VDLSGQA---YDEAYAEFQRLKQAAI--------AEKNRARVLGG-LPDVVTI 129
Query: 1067 PEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFIS-LDMDYVYARDSG 1125
E ++ C + DP + W N + A ++ G + ++ V DSG
Sbjct: 130 QEGKALNLTCNVW--GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSG 187
Query: 1126 EYICRATNKWGT 1137
+Y NK+G+
Sbjct: 188 KYGLVVKNKYGS 199
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 24/170 (14%)
Query: 440 ELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC--------------- 484
+LKV W HNG I + +RVK + + I +D G+YV
Sbjct: 32 DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 91
Query: 485 ------RAWNNXXXXXXXXXXXXHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMRI 538
A+ ++ R+ D + + E ++ C + DP +
Sbjct: 92 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEV 149
Query: 539 DWFFNGRPFATGSRVKTVYDFGFIS-LDMDYVYARDSGEYICRATNKWGT 587
W N + A ++ G + ++ V DSG+Y NK+G+
Sbjct: 150 SWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 199
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 21/144 (14%)
Query: 1456 NMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAIL 1515
++KV W NG + + +R + + P D G+Y+ D
Sbjct: 32 DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL-----FDGKTGHQ 86
Query: 1516 KTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQ 1575
KT G Y+ E A +Q + + ++ A V P+ +Q
Sbjct: 87 KTVDLSGQAYD--------------EAYAEFQRLKQAAIAEKN--RARVLGGLPDVVTIQ 130
Query: 1576 EGEPARFCTRVTGYPRPRVMWLIN 1599
EG+ V G P P V WL N
Sbjct: 131 EGKALNLTCNVWGDPPPEVSWLKN 154
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 156 ELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCQWF 203
+LKV W HNG I + +RVK + + I +D G+YV + F
Sbjct: 32 DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFG-FVILEINDV 981
P +T+ E + C + DP V W N KAL+ + G IN V
Sbjct: 124 PDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGV 181
Query: 982 YLRDSGLYTCKATNKHGEATTSCKLTV 1008
DSG Y NK+G T+ ++V
Sbjct: 182 STADSGKYGLVVKNKYGSETSDFTVSV 208
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%)
Query: 1736 GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEED 1795
G G P + + G+ K++ T+P+ W+K K+I K +
Sbjct: 1 GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE 60
Query: 1796 NLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
N L I+ A E G Y + N G + + L V
Sbjct: 61 NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 335 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 394
G Q +T ++ K I+ S ++ ++ L IL + E G YT NK G +
Sbjct: 32 TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 91
Query: 395 SVNLECVDKSKGQPPKFT 412
VNL VDK PP T
Sbjct: 92 QVNLTVVDKPD--PPAGT 107
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 1664 DGDPLPTIKWFREDFPITSSPDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAENRGGKAK 1722
DG P PT+ W ++ PI + + ++F+ S LI+++V D + IAEN+ G+
Sbjct: 38 DGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQD 97
Query: 1723 CSANLVV 1729
+ +L V
Sbjct: 98 ATIHLKV 104
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 7 PNLKIEWFKNGVPLSL-GSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTC 65
P + W K+G P+ + + +F++ L I + D A Y C A N GE +T
Sbjct: 41 PEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDATI 100
Query: 66 TLKI 69
LK+
Sbjct: 101 HLKV 104
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 1057 TSQLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISL 1114
T +++ L VP A V F C PTMR W NG+ F R+ SL
Sbjct: 15 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSL 72
Query: 1115 DMDYVYARDSGEYICRATNKWGT 1137
M+ V D G Y C N++G+
Sbjct: 73 IMESVVPSDKGNYTCVVENEYGS 95
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C PTMR W NG+ F R+ SL M+ V D
Sbjct: 25 VPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 82
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 83 GNYTCVVENEYGS 95
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1422 KQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIY 1478
K+ P + K + +L + + KF C G+P + W NGK ++R
Sbjct: 7 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIG--- 61
Query: 1479 DFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
GY N W V P D G Y C N YG
Sbjct: 62 --GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 94
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 1776 WLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVV-EDSGAYECVAMNNAG 1822
WLKNGK+ + R + N LI+E+VV D G Y CV N G
Sbjct: 47 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 94
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T+ W NGK RI K N +I+E V D G YTC N
Sbjct: 34 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 91
Query: 996 KHGEATTSCKLTV 1008
++G + L V
Sbjct: 92 EYGSINHTYHLDV 104
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 334 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 36 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 91
Query: 388 KWGQAEISVNLECV 401
++G + +L+ V
Sbjct: 92 EYGSINHTYHLDVV 105
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 1057 TSQLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISL 1114
T +++ L VP A V F C PTMR W NG+ F R+ SL
Sbjct: 10 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSL 67
Query: 1115 DMDYVYARDSGEYICRATNKWGT 1137
M+ V D G Y C N++G+
Sbjct: 68 IMESVVPSDKGNYTCVVENEYGS 90
Score = 37.0 bits (84), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C PTMR W NG+ F R+ SL M+ V D
Sbjct: 20 VPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 77
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 78 GNYTCVVENEYGS 90
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1422 KQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIY 1478
K+ P + K + +L + + KF C G+P + W NGK ++R
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIG--- 56
Query: 1479 DFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
GY N W V P D G Y C N YG
Sbjct: 57 --GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 89
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 1776 WLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVV-EDSGAYECVAMNNAG 1822
WLKNGK+ + R + N LI+E+VV D G Y CV N G
Sbjct: 42 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 89
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T+ W NGK RI K N +I+E V D G YTC N
Sbjct: 29 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 86
Query: 996 KHGEATTSCKLTV 1008
++G + L V
Sbjct: 87 EYGSINHTYHLDV 99
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 334 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 31 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 86
Query: 388 KWGQAEISVNLECV 401
++G + +L+ V
Sbjct: 87 EYGSINHTYHLDVV 100
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast Growth
Factor
Length = 104
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 1057 TSQLQDNLD-VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISL 1114
T +++ L VP A V F C PTMR W NG+ F R+ SL
Sbjct: 14 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSL 71
Query: 1115 DMDYVYARDSGEYICRATNKWGT 1137
M+ V D G Y C N++G+
Sbjct: 72 IMESVVPSDKGNYTCVVENEYGS 94
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV-YDFGFISLDMDYVYARDS 574
VP A V F C PTMR W NG+ F R+ SL M+ V D
Sbjct: 24 VPAANTVKFRCPAGGNPMPTMR--WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 81
Query: 575 GEYICRATNKWGT 587
G Y C N++G+
Sbjct: 82 GNYTCVVENEYGS 94
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1422 KQPPRFVTQIKTQDQLVEM---QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIY 1478
K+ P + K + +L + + KF C G+P + W NGK ++R
Sbjct: 6 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIG--- 60
Query: 1479 DFGYVAMNFGW------VYPEDSGEYLCRATNLYG 1507
GY N W V P D G Y C N YG
Sbjct: 61 --GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 93
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 1776 WLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVV-EDSGAYECVAMNNAG 1822
WLKNGK+ + R + N LI+E+VV D G Y CV N G
Sbjct: 46 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 93
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 939 RLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATN 995
R +P T+ W NGK RI K N +I+E V D G YTC N
Sbjct: 33 RCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVEN 90
Query: 996 KHGEATTSCKLTV 1008
++G + L V
Sbjct: 91 EYGSINHTYHLDV 103
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 334 PVGDQTM-TVEFLYNGKPIEASHRI-----RTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
P G M T+ +L NGK + HRI R H + +++ ++ + D G YTC N
Sbjct: 35 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH-WSLIMESVVPS---DKGNYTCVVEN 90
Query: 388 KWGQAEISVNLECV 401
++G + +L+ V
Sbjct: 91 EYGSINHTYHLDVV 104
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First
Ig Domain From Robo1
Length = 117
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 1742 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKI-----IPDIRYKTLEEDN 1796
PP + S +++ G+ A + K + W K G+++ P L +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 1797 LFTLLIIEAVVE--DSGAYECVAMNNAGEA 1824
LF L I+ D G Y CVA N GEA
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA------GSRIKTIND 970
P + P+DL +++ A C+ P+ T+EW+ G+ + R+ +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 971 FGFVILEINDVYLR-DSGLYTCKATNKHGEATT 1002
F + ++ R D G+Y C A N GEA +
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of
The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 80/203 (39%), Gaps = 34/203 (16%)
Query: 1559 PKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMW------LINGHT---IVNEI-- 1607
P+ + + V+ PE++ V G+ + C R TG+P + W + NG+T I N +
Sbjct: 16 PRGSKITVN-PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHV 74
Query: 1608 ------VRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPC------RAFEQD 1655
V ++ T E ++ + S + + V K+Q C +
Sbjct: 75 KDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGS 134
Query: 1656 QARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV-IA 1714
+ G P+P +WF+ + P+T TK + ++ V +E G + +
Sbjct: 135 TLVLQCVAVGSPIPHYQWFKNELPLTH---------ETKKLYMVPYVDLEHQGTYWCHVY 185
Query: 1715 ENRGGKAKCSANLVVEEKRQGGR 1737
+R + ++++E G
Sbjct: 186 NDRDSQDSKKVEIIIDELNNLGH 208
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 38/183 (20%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLC 1500
Q K C+ G P ++ +WF K +P+ N I F V+ +D+G Y+C
Sbjct: 34 QFVKLCCRAT--GHPFVQYQWFKMNKEIPNGNTSELI---------FNAVHVKDAGFYVC 82
Query: 1501 RATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPK 1560
R N + + ++ SQL + ++ S+Q + + + E +
Sbjct: 83 RVNNNFTFEFSQW-------------SQL--------DVCDIPESFQRSVDGVSESKLQ- 120
Query: 1561 EAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEME 1620
+P +QK+ G G P P W N + +E +K+ ++E
Sbjct: 121 ----ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-TKKLYMVPYVDLE 175
Query: 1621 HKG 1623
H+G
Sbjct: 176 HQG 178
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 21/128 (16%)
Query: 372 GTKIEDTGVYTCRATN-------KWGQAEISVNLECVDKSKGQPPKFTSHI---KSLEGL 421
++D G Y CR N +W Q ++ E +S + I + + L
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 422 KDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGE 481
G + +C V P +WF N P+ H+ + + + YV G
Sbjct: 131 MPGSTLVLQC--VAVGSPIPHYQWFKNELPLTHETKKLYM---------VPYVDLEHQGT 179
Query: 482 YVCRAWNN 489
Y C +N+
Sbjct: 180 YWCHVYND 187
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 37.0 bits (84), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAG--SRIKTINDF 971
G P+ P+D+++ E + C T +P+ V W G+ + + R N
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 972 GFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
L I DV +D GLYT N+ G + + + ++
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 602 IVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
I ++G +L H + T+H + I EE++G YECRA+N
Sbjct: 65 ICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|2EDK|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 101
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 1735 GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPD----IRYK 1790
G G P +T + + VG ++S + V W+KNG ++ + RY+
Sbjct: 1 GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYR 59
Query: 1791 TLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
++ L+ + V ED G Y+ + N G+ CEAEL+V+
Sbjct: 60 FKKDGKRHILIFSDVVQEDRGRYQVI--TNGGQ--CEAELIVE 98
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 1632 ASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQI-HT 1690
S + P + ++ + F D+ VE + + W + +T F+ +
Sbjct: 1 GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYR 59
Query: 1691 FST---KSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR 1733
F + ILI V ED G + VI GG+ C A L+VEEK+
Sbjct: 60 FKKDGKRHILIFSDVVQEDRGRYQVITN--GGQ--CEAELIVEEKQ 101
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%)
Query: 1644 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 1703
+K Q E +F DGDP P I W + S+ T L +R
Sbjct: 390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 1704 MEDSGVFAVIAENRGGKAKCSANLVVE 1730
++D+G + IA N GG A+L V
Sbjct: 450 VQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 1754 INVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAY 1813
++ G +F + P + WL K ++ L TL + A V+D+G Y
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTY 456
Query: 1814 ECVAMNNAGEARCEAELVVQS 1834
C+A N G A L V+S
Sbjct: 457 LCIAANAGGNDSMPAHLHVRS 477
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSG 575
V E V F CR + DP I W + + + F +L++ Y +D+G
Sbjct: 397 VDEGHTVQFVCRAD--GDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNG 454
Query: 576 EYICRATNKWG 586
Y+C A N G
Sbjct: 455 TYLCIAANAGG 465
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 1066 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSG 1125
V E V F CR + DP I W + + + F +L++ Y +D+G
Sbjct: 397 VDEGHTVQFVCRAD--GDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNG 454
Query: 1126 EYICRATNKWG 1136
Y+C A N G
Sbjct: 455 TYLCIAANAGG 465
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 134 PSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 193
P D T+ +GK +C +++ + +W NG P+ +R+K+V + IA +
Sbjct: 13 PLTDQTVNLGKEICLKCEISE-NIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTE 71
Query: 194 DSGEYVCQWFVNNKPLPA 211
D G+YV N LPA
Sbjct: 72 DEGDYVFAPDAYNVTLPA 89
Score = 35.0 bits (79), Expect = 0.40, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 1736 GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEED 1795
G G LT ++ +N+G+ +IS P W KNG + R K +++
Sbjct: 1 GSSGSSGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKG 58
Query: 1796 NLFTLLIIEAVVEDSGAY 1813
+ L+I A+ ED G Y
Sbjct: 59 RIHKLVIANALTEDEGDY 76
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 602 IVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
I ++G +L H + T+H + I EE++G YECRA+N
Sbjct: 65 IXSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 20/125 (16%)
Query: 368 LEILGTKIEDTGVYTCRATNKWG-QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 426
L I I+D G+Y C T + G Q+E +VN++ K + + + K+G+
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL------MFKNAPTPQEFKEGED 117
Query: 427 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQ-----SHDSGE 481
A C + P + W H G+ + K V+ F+V+ Y+Q D G
Sbjct: 118 AVIVCDVVSSLPP--TIIWKHKGRDVILKKDVR------FIVLSNNYLQIRGIKKTDEGT 169
Query: 482 YVCRA 486
Y C
Sbjct: 170 YRCEG 174
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 1750 SSAVINVGQLARFDAKISA-TKPLDVYWLK-NGKKIIPDIRYKTL--EEDNLFTLLIIEA 1805
S I+VG+ F +++ K D+ W NG+K+ P+ + ++ +D+ TL I A
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 1806 VVEDSGAYECVAMNNAG 1822
++D+G Y+CV G
Sbjct: 70 NIDDAGIYKCVVTAEDG 86
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH------NGKALSAGSR-IKTINDFGFV 974
TP +T C L +N + W+ N +++S G R ++T+N
Sbjct: 6 TPQTITKETGESLTINCVLRDSNCALSSTYWYRKKSGSTNEESISKGGRYVETVNSGSKS 65
Query: 975 I-LEINDVYLRDSGLYTCKATNKHGEATTSC 1004
L IND+ + DSG Y CK +++G C
Sbjct: 66 FSLRINDLTVEDSGTYRCKPESRYGSYDAEC 96
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAG--SRIKTINDF 971
G P+ P+D+++ E + C T +P+ V W G+ + + R N
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIENTD 62
Query: 972 GFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009
L I DV +D GLYT N+ G + + + ++
Sbjct: 63 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 100
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFG-FVIL 976
E L DLT+ + A F+C ++ D +T +W+ NG + RI TI+ G F L
Sbjct: 10 EVLQDIADLTVKAAEQAVFKCEVS---DEKVTGKWYKNGVEVRPSKRI-TISHVGRFHKL 65
Query: 977 EINDVYLRDSGLYT 990
I+DV D G YT
Sbjct: 66 VIDDVRPEDEGDYT 79
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 919 FLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEI 978
FL P DL CRL D ++ W +G L+ +R + + +E+
Sbjct: 13 FLVHPGDLL-------QLRCRL---RDDVQSINWLRDGVQLAESNRTRITGEE----VEV 58
Query: 979 NDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
D DSGLY C ++ G TT + V
Sbjct: 59 QDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 946 PSMTVEWFHNGKALSAG--SRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGE 999
PS T+ WF +G+ L + S IK N LE+ D G Y C A N+ G+
Sbjct: 46 PSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 101
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 737 PKLKVEWFWNGK--PMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGE 790
P + WF +G+ P S + + LE++P D G Y+C A N G+
Sbjct: 46 PSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 101
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 1455 PNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPE---DSGEYLCRATNLYGMDET 1511
P+ + WF +G+ LP N N I + + ++ V P+ D G Y C A N G +
Sbjct: 46 PSATISWFRDGQLLPSSNYSN-IKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESL 104
Query: 1512 RAILKTTGKP 1521
IL P
Sbjct: 105 EFILVQADTP 114
>pdb|1TIT|A Chain A, Titin, Ig Repeat 27, Nmr, Minimized Average Structure
pdb|1TIU|A Chain A, Titin, Ig Repeat 27, Nmr, 24 Structures
Length = 98
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 1644 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 1703
K + F + A FE+E +P +W + P+T+SPD +I K ILI+
Sbjct: 15 KPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQ 73
Query: 1704 MEDSGVFAVIAENRGGKAKCSANLVVEE 1731
+ +G + A N AK +ANL V+E
Sbjct: 74 LGMTGEVSFQAAN----AKSAANLKVKE 97
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 35.8 bits (81), Expect = 0.27, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 912 DLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF 971
D G P FL P + + A +C + +P V W G+ L+A R+ D
Sbjct: 10 DQGSPPCFLRRPRPVRVVSGAEAELKCVVL--GEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 972 GFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
L + D+G+Y C+A N GEA + +TV
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 104
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 34/85 (40%)
Query: 1632 ASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF 1691
+S PP F ++ +P R +A + G+P P + W + + +S
Sbjct: 7 SSGDQGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD 66
Query: 1692 STKSILIMRQVFMEDSGVFAVIAEN 1716
+ L++ D+GV+ A N
Sbjct: 67 GAEHGLLLTAALPTDAGVYVCRARN 91
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 30/78 (38%)
Query: 1742 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLL 1801
PP FL + G A + P V W K G+++ R + LL
Sbjct: 14 PPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 73
Query: 1802 IIEAVVEDSGAYECVAMN 1819
+ A+ D+G Y C A N
Sbjct: 74 LTAALPTDAGVYVCRARN 91
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 35.4 bits (80), Expect = 0.28, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 925 DLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLR 984
DL + E A C L+ P V+W + L G + + + L + ++ +
Sbjct: 17 DLEVLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ 73
Query: 985 DSGLYTCKATNKHGEATTSCKLTV 1008
DSG Y+C G+ TTS LTV
Sbjct: 74 DSGRYSC----SFGDQTTSATLTV 93
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 718 DLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDC 777
++ EG A L+ P V+W + ++ G ++ + + L + + P+D
Sbjct: 19 EVLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDS 75
Query: 778 GQYSCRAYNDYGEAVTSASMKV 799
G+YSC +G+ TSA++ V
Sbjct: 76 GRYSC----SFGDQTTSATLTV 93
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 1724
G+P+P I+W + P+ S+ + ++ ++L + + +ED G++ AEN GK K
Sbjct: 139 GNPVPDIRWRKVLEPMPSTAEIS----TSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQ 194
Query: 1725 ANLVVE 1730
A + V+
Sbjct: 195 ARIYVQ 200
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 34/172 (19%)
Query: 143 GKLLCTLTPVNDPE-LKVEWFHNGKPIF-HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 200
G +L P + P+ L W N P+F ++ + VS + IA V++ D G Y C
Sbjct: 25 GMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLY-IANVEASDKGNYSC 83
Query: 201 QWFVNN----------------------KPLPAGAKFKTTHDFGYVALDIEL---MLKTL 235
FV++ KP PA + + + ++ L L
Sbjct: 84 --FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP 141
Query: 236 VPFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKG 287
VP W +P+P+ A+ T+ L I ED GIY +A N +G
Sbjct: 142 VPDIRWRKVLEPMPSTAEISTSG----AVLKIFNIQLEDEGIYECEAENIRG 189
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 22/174 (12%)
Query: 1670 TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 1729
+ +W +FP+ + D + T L + V D G ++ + + +
Sbjct: 41 SYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFI- 99
Query: 1730 EEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRY 1789
++P TT V Q A + L+ + L N +PDIR+
Sbjct: 100 ---------PLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP---VPDIRW 147
Query: 1790 KTLEEDNLFT---------LLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
+ + E T L I +ED G YEC A N G+ + +A + VQ+
Sbjct: 148 RKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
>pdb|1YPZ|E Chain E, Immune Receptor
pdb|1YPZ|G Chain G, Immune Receptor
Length = 207
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 21/116 (18%)
Query: 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWF-HNGKA-------LSAGS----RIKTIN 969
+P+ L+L E T + C T T +V+WF N + L++G+ R+K+
Sbjct: 7 SPSALSLHEGTDSALRCNFTTT---MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAF 63
Query: 970 DFG---FVILEINDVYLRDSGLYTCKATNKH---GEATTSCKLTVKGRQGIDVEPQ 1019
D + L I D L DSG Y C A H G + KL + VEP+
Sbjct: 64 DSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPK 119
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 35.0 bits (79), Expect = 0.37, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 912 DLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF 971
D G P FL P + + A +C + +P V W G+ L+A R+ D
Sbjct: 10 DQGSPPCFLRFPRPVRVVSGAEAELKCVVL--GEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 972 GFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
L + D+G+Y C+A N GEA + +TV
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 104
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 33/85 (38%)
Query: 1632 ASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF 1691
+S PP F + +P R +A + G+P P + W + + +S
Sbjct: 7 SSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD 66
Query: 1692 STKSILIMRQVFMEDSGVFAVIAEN 1716
+ L++ D+GV+ A N
Sbjct: 67 GAEHGLLLTAALPTDAGVYVCRARN 91
Score = 30.8 bits (68), Expect = 7.6, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 30/78 (38%)
Query: 1742 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLL 1801
PP FL + G A + P V W K G+++ R + LL
Sbjct: 14 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 73
Query: 1802 IIEAVVEDSGAYECVAMN 1819
+ A+ D+G Y C A N
Sbjct: 74 LTAALPTDAGVYVCRARN 91
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin Binding
Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow Type
Myosin-Binding Protein C
Length = 100
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 1736 GRGGVVPPSFLTTISSAV-INVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794
G G +F + A ++ G RF +++ K L+V W KNG++I P +Y +
Sbjct: 1 GSSGSSGAAFAKILDPAYQVDKGGRVRFVVELADPK-LEVKWYKNGQEIRPSTKYIFEHK 59
Query: 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
L I + D Y AG+ +C EL V+S
Sbjct: 60 GCQRILFINNCQMTDDSEYYVT----AGDEKCSTELFVRS 95
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 1641 VFTKKIQPCRAFEQDQA---RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSIL 1697
F K + P A++ D+ RF VE DP +KW++ I S + + IL
Sbjct: 9 AFAKILDP--AYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 1698 IMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGG 1736
+ M D + V A G KCS L V G
Sbjct: 66 FINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPSSG 100
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 34.7 bits (78), Expect = 0.48, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 912 DLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF 971
D G P FL P + + A +C + +P V W G+ L+A R+ D
Sbjct: 9 DQGSPPCFLRFPRPVRVVSGAEAELKCVVL--GEPPPVVVWEKGGQQLAASERLSFPADG 66
Query: 972 GFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
L + D+G+Y C+A N GEA + +TV
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 33/85 (38%)
Query: 1632 ASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF 1691
+S PP F + +P R +A + G+P P + W + + +S
Sbjct: 6 SSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD 65
Query: 1692 STKSILIMRQVFMEDSGVFAVIAEN 1716
+ L++ D+GV+ A N
Sbjct: 66 GAEHGLLLTAALPTDAGVYVCRARN 90
Score = 30.8 bits (68), Expect = 8.3, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 30/78 (38%)
Query: 1742 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLL 1801
PP FL + G A + P V W K G+++ R + LL
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 1802 IIEAVVEDSGAYECVAMN 1819
+ A+ D+G Y C A N
Sbjct: 73 LTAALPTDAGVYVCRARN 90
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 34.7 bits (78), Expect = 0.51, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 925 DLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLR 984
DL + E A C L+ P V+W + L G + + + L + ++ +
Sbjct: 17 DLEVLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQ 73
Query: 985 DSGLYTCKATNKHGEATTSCKLTV 1008
DSG Y+C G+ TTS LTV
Sbjct: 74 DSGRYSC----SFGDQTTSATLTV 93
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 718 DLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDC 777
++ EG A L+ P V+W + ++ G ++ + + L + + P+D
Sbjct: 19 EVLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQDS 75
Query: 778 GQYSCRAYNDYGEAVTSASMKV 799
G+YSC +G+ TSA++ V
Sbjct: 76 GRYSC----SFGDQTTSATLTV 93
>pdb|4G6F|H Chain H, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|B Chain B, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 236
Score = 34.7 bits (78), Expect = 0.53, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 965 IKTINDFGFVILEINDVYLRDSGLYTCKATNKH 997
I +N F+ LE+N++ + DSGLY C T K+
Sbjct: 72 ISRLNSINFLYLEMNNLRMEDSGLYFCARTGKY 104
Score = 30.8 bits (68), Expect = 8.3, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 350 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 389
P+E I +++ + LE+ ++ED+G+Y C T K+
Sbjct: 65 PVEGRFTISRLNSINFLYLEMNNLRMEDSGLYFCARTGKY 104
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 34.7 bits (78), Expect = 0.54, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 930 ESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLY 989
E A +C L+ + VEW +AL G + D L+I+ + + D+G+Y
Sbjct: 21 EGATATLQCELSK----AAPVEWRKGLEALRDGDKYSLRQDGAVCELQIHGLAMADNGVY 76
Query: 990 TCKATNKHGEATTSCKLTVKG 1010
+C G+ TS LTV+
Sbjct: 77 SCVC----GQERTSATLTVRA 93
>pdb|1H5B|B Chain B, T Cell Receptor Valpha11 (Av11s5) Domain
pdb|1H5B|D Chain D, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 34.3 bits (77), Expect = 0.69, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 18/92 (19%)
Query: 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWF-HNGKA-------LSAGS----RIKTIN 969
+P+ L+L E T + C T T +V+WF N + L++G+ R+K+
Sbjct: 7 SPSALSLHEGTDSALRCNFTTT---MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAF 63
Query: 970 DFG---FVILEINDVYLRDSGLYTCKATNKHG 998
D + L I D L DSG Y C A G
Sbjct: 64 DSKERRYSTLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH-NGKA-------LSAGS----RIKTIN 969
+P+ L+L E T + C T T V+WF N + L++G+ R+K+
Sbjct: 9 SPSALSLHEGTGSALRCNFTTT---MRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAF 65
Query: 970 DFG--FVILEINDVYLRDSGLYTCKATNKHGE 999
D + L I D L DSG Y C A G+
Sbjct: 66 DSKERYSTLHIRDAQLEDSGTYFCAAEPSSGQ 97
>pdb|3QJH|A Chain A, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|C Chain C, The Crystal Structure Of The 5c.C7 Tcr
Length = 205
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 33/133 (24%)
Query: 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH-NGKA-------LSAGS----RIKTIN 969
+P+ L+L E T + C T T V+WF N + L++G+ R+K+
Sbjct: 9 SPSALSLHEGTGSALRCNFTTT---MRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAF 65
Query: 970 DFG--FVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANA 1027
D + L I D L DSG Y C A EA+ + K+ + V P
Sbjct: 66 DSKERYSTLHIRDAQLEDSGTYFCAA-----EASNTNKVVFGTGTRLQVLP--------- 111
Query: 1028 TKNIQKLEEALYR 1040
NIQ + A+Y+
Sbjct: 112 --NIQNPDPAVYQ 122
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 66/170 (38%), Gaps = 23/170 (13%)
Query: 145 LLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCQW-F 203
L C LT + + W NG + K S+ + I ++ DSGEY C + F
Sbjct: 23 LQCNLTSSSHTLMYSYWTKNGVELTATR--KNASNMEY---RINKPRAEDSGEYHCVYHF 77
Query: 204 VNNKPLPAGAKFKTTHDF-GYV-------ALDIELMLKTL-VPFTEWFVNNKP------- 247
V+ A + K D G+ D + K++ P EW K
Sbjct: 78 VSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEI 137
Query: 248 LPAGAKFKTTHDFGYVALDIVG-AYAEDSGIYTVKATNSKGSATTSGTLK 296
+ +F + Y L+IV ED G Y ATNS GSA+ S L+
Sbjct: 138 SNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 21/114 (18%)
Query: 699 ADIEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKP-------MK 751
A IE + AP T ++ EG++A + P EW W K
Sbjct: 85 ATIEVKAAPDIT-GHKRSENKNEGQDAMMYCKSVGYPHP----EWMWRKKENGVFEEISN 139
Query: 752 TGSRF-----RTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQ 800
+ RF + + V L+I+ ED G+Y C A N G A S ++V+
Sbjct: 140 SSGRFFIINKENYTELNIVNLQIT----EDPGEYECNATNSIGSASVSTVLRVR 189
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 34.3 bits (77), Expect = 0.75, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 18/92 (19%)
Query: 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWF-HNGKA-------LSAGS----RIKTIN 969
+P+ L+L E T + C T T +V+WF N + L++G+ R+K+
Sbjct: 7 SPSALSLHEGTDSALRCNFTTT---MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAF 63
Query: 970 DFG---FVILEINDVYLRDSGLYTCKATNKHG 998
D + L I D L DSG Y C A G
Sbjct: 64 DSKERRYSTLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 33.9 bits (76), Expect = 0.78, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 18/92 (19%)
Query: 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWF-HNGKA-------LSAGS----RIKTIN 969
+P+ L+L E T + C T T +V+WF N + L++G+ R+K+
Sbjct: 7 SPSALSLHEGTDSALRCNFTTT---MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAF 63
Query: 970 DFG---FVILEINDVYLRDSGLYTCKATNKHG 998
D + L I D L DSG Y C A G
Sbjct: 64 DSERARYSTLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 33.9 bits (76), Expect = 0.81, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 1750 SSAVINVGQLARFDAKISA-TKPLDVYWLK-NGKKIIPDIRYKTL--EEDNLFTLLIIEA 1805
S I+VG+ F +++ K D+ W NG+K+ P+ + ++ +D+ TL I A
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 1806 VVEDSGAYECVAMNNAG 1822
++D+G Y+CV G
Sbjct: 70 NIDDAGIYKCVVTAEDG 86
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEA 61
+P +I WFK+ L S I G L+I +R +D +YTC+A ++LG A
Sbjct: 36 GNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA 90
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTL 1800
V P+ + + ++G+ S P + W K+ + ++ D + +D L
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED--SGIVLKDGNRNL 66
Query: 1801 LIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
I ED G Y C A + G A+ EA +++
Sbjct: 67 TIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 935 HFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVI------LEINDVYLRDSGL 988
E T + +P + WF + + L + D G V+ L I V D GL
Sbjct: 27 SIEVSCTASGNPPPQIMWFKDNETL--------VEDSGIVLKDGNRNLTIRRVRKEDEGL 78
Query: 989 YTCKATNKHGEATTSCKLTVKGRQ 1012
YTC+A + G A ++G Q
Sbjct: 79 YTCQACSVLGCAKVEAFFIIEGAQ 102
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 929 AESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGL 988
+E A +C L+ VEW + L G R D L+I+D+ + D+G
Sbjct: 21 SEGATATLQCELSKV----APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGE 76
Query: 989 YTCKATNKHGEATTSCKLTVKG 1010
Y+C G+ TS LTV+
Sbjct: 77 YSCMC----GQERTSATLTVRA 94
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 1735 GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794
G G P F + + + G A ++S P++ W K + + RY ++
Sbjct: 1 GSSGSSGPARFTQDLKTKEASEGATATLQCELSKVAPVE--WKKGPETLRDGGRYSLKQD 58
Query: 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
L I + V D+G Y C+ G+ R A L V++
Sbjct: 59 GTRCELQIHDLSVADAGEYSCM----CGQERTSATLTVRA 94
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 1748 TISSAVINVGQLARFDAKISATKPLDVYWLK-NGKKIIPDIRYKTLEEDNLFTLLIIEAV 1806
++S ++VG+ ++F + +P + W G+KII R +E L I A
Sbjct: 6 SLSKVELSVGE-SKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN 64
Query: 1807 VEDSGAYECVAMNNAGEARCEAELVVQ 1833
+ED+G Y C A + G+ + EA +V++
Sbjct: 65 IEDAGIYRCQATDAKGQTQ-EATVVLE 90
Score = 30.4 bits (67), Expect = 9.1, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 320 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 379
LS GE F + I G+ + G+ I ++ R+ L I IED G
Sbjct: 12 LSVGESKFFTCTAI--GEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAG 69
Query: 380 VYTCRATNKWGQA-EISVNLE 399
+Y C+AT+ GQ E +V LE
Sbjct: 70 IYRCQATDAKGQTQEATVVLE 90
>pdb|1L7I|H Chain H, Crystal Structure Of The Anti-Erbb2 Fab2c4
Length = 222
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 4 RADPNLKIEWFKNGVPLSLGS----RIRSTFDFGL------VTLSINSLRADDSAIYTCK 53
R P +EW + P S GS R + F + + L +NSLRA+D+A+Y C
Sbjct: 38 RQAPGKGLEWVADVNPNSGGSIYNQRFKGRFTLSVDRSKNTLYLQMNSLRAEDTAVYYC- 96
Query: 54 ATNL 57
A NL
Sbjct: 97 ARNL 100
>pdb|1S78|D Chain D, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
pdb|1S78|F Chain F, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
Length = 226
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 4 RADPNLKIEWFKNGVPLSLGS----RIRSTFDFGL------VTLSINSLRADDSAIYTCK 53
R P +EW + P S GS R + F + + L +NSLRA+D+A+Y C
Sbjct: 38 RQAPGKGLEWVADVNPNSGGSIYNQRFKGRFTLSVDRSKNTLYLQMNSLRAEDTAVYYC- 96
Query: 54 ATNL 57
A NL
Sbjct: 97 ARNL 100
>pdb|2I24|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain
pdb|2I25|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain In Complex With Lysozyme
pdb|2I25|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain In Complex With Lysozyme
Length = 121
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 955 NGKALSAGSR-IKTINDFGFVI-LEINDVYLRDSGLYTCKATNKHGEATTSC 1004
N +++S G R ++T+N L IND+ ++DSG Y CK +++G C
Sbjct: 45 NEESISDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCKPESRYGSYDAVC 96
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 933 LAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCK 992
L CRL D ++ W +G L +R + + +E+ D DSGLY C
Sbjct: 26 LLQLRCRL---RDDVQSINWLRDGVQLVESNRTRITGEE----VEVRDSIPADSGLYACV 78
Query: 993 ATNKHGEATTSCKLTV 1008
++ G TT + V
Sbjct: 79 TSSPSGSDTTYFSVNV 94
>pdb|2QSC|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3-Fab F425-B4e8
In Complex With A V3-Peptide
Length = 215
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 824 ISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQ--LPKGME----GTIDKI 877
I+ + PED Y C+ Y++ G+ KV+ KR++ S P E GT +
Sbjct: 75 ITSLQPEDAATYFCQQYDNLGDLSFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVV 134
Query: 878 AELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAH-F 936
L + + RE + K+ G+ +E E+D + L++ L+ A+ +
Sbjct: 135 CLLNNF-YPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVY 193
Query: 937 ECRLTPTNDPSMTVEWFHNGK 957
C +T S + F+ G+
Sbjct: 194 ACEVTHQGLSSPVTKSFNRGE 214
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 733 PTDDPKLKVEWFWNGKPMKTG--SRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGE 790
P PKL + + ++TG SRF I+ + PED Y C+ Y++ G+
Sbjct: 40 PGKAPKLLI---YTASNLETGVPSRFSGGGSGTHFSFTITSLQPEDAATYFCQQYDNLGD 96
Query: 791 AVTSASMKVQGKRSI 805
KV+ KR++
Sbjct: 97 LSFGGGTKVEIKRTV 111
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 1653 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAV 1712
E + R E+ G P + W ++ I S + + T ++L++R ++D+G +
Sbjct: 24 EDVELRCELSRAGTP---VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTC 80
Query: 1713 IAENRGGKAKCSANLVVEEKRQGGRGG 1739
E +K +A+L VEEK G G
Sbjct: 81 EVE----ASKSTASLHVEEKASGPSSG 103
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 1735 GGRGGVVPPSFLTTISSAVINVGQLARFDAKIS-ATKPLDVYWLKNGKKIIPDIRYKTLE 1793
G G P + + + + G+ ++S A P V+WLK+ K I +Y +
Sbjct: 1 GSSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVC 58
Query: 1794 EDNLFTLLIIEAVVEDSGAYEC 1815
E + L+I A ++D+G Y C
Sbjct: 59 EGTMAMLVIRGASLKDAGEYTC 80
Score = 30.8 bits (68), Expect = 8.3, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 722 GENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYS 781
GE+ L+ P V W + K ++ ++ C+ +L I +D G+Y+
Sbjct: 23 GEDVELRCELSRAGTP---VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYT 79
Query: 782 CRAYNDYGEAVTSASMKVQGKRS 804
C + + ++AS+ V+ K S
Sbjct: 80 C----EVEASKSTASLHVEEKAS 98
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 930 ESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLY 989
E A C L+ + VEW ++L G R D L+I + + D+G Y
Sbjct: 22 EGATATLRCELSK----AAPVEWRKGRESLRDGDRHSLRQDGAVCELQICGLAVADAGEY 77
Query: 990 TCKATNKHGEATTSCKLTVKG 1010
+C GE TS LTVK
Sbjct: 78 SCVC----GEERTSATLTVKA 94
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 1735 GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794
G G P F+ + G A ++S P++ W K + + R+ ++
Sbjct: 1 GSSGSSGPAHFIGRLRHQESIEGATATLRCELSKAAPVE--WRKGRESLRDGDRHSLRQD 58
Query: 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
+ L I V D+G Y CV GE R A L V++
Sbjct: 59 GAVCELQICGLAVADAGEYSCV----CGEERTSATLTVKA 94
>pdb|3HOS|A Chain A, Crystal Structure Of The Mariner Mos1 Paired End Complex
With Mg
pdb|3HOS|B Chain B, Crystal Structure Of The Mariner Mos1 Paired End Complex
With Mg
pdb|3HOT|A Chain A, Crystal Structure Of The Mos1 Mariner Paired End Complex
With Mn
pdb|3HOT|B Chain B, Crystal Structure Of The Mos1 Mariner Paired End Complex
With Mn
Length = 345
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 330 ASLIPVGDQTMTVE-FLYNGKPIEA-SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
+S +P +QT TV F ++ K A SHR+ V AFG V V TC
Sbjct: 2 SSFVPNKEQTRTVLIFCFHLKKTAAESHRM-LVEAFGEQV----------PTVKTC---E 47
Query: 388 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT 434
+W Q S + + DK G+PPK + L+ L D D A + L
Sbjct: 48 RWFQRFKSGDFDVDDKEHGKPPKRYEDAE-LQALLDEDDAQTQKQLA 93
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 1735 GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794
G G P F+ + + G A ++S P++ W K + + RY ++
Sbjct: 1 GSSGSSGPARFIEDVKNQEAREGATAVLQCELSKAAPVE--WRKGSETLRGGDRYSLRQD 58
Query: 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
L I V D+G Y CV G+ R A L V++
Sbjct: 59 GTRCELQIHGLSVADTGEYSCV----CGQERTSATLTVRA 94
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 930 ESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLY 989
E A +C L+ + VEW + L G R D L+I+ + + D+G Y
Sbjct: 22 EGATAVLQCELSK----AAPVEWRKGSETLRGGDRYSLRQDGTRCELQIHGLSVADTGEY 77
Query: 990 TCKATNKHGEATTSCKLTVKG 1010
+C G+ TS LTV+
Sbjct: 78 SCVC----GQERTSATLTVRA 94
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 22/206 (10%)
Query: 1642 FTKKIQPCRAFEQDQARFEVE---FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-- 1696
FTK E+ Q RF ++ G+ + + + I P +++H I
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNA--KVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 1697 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV--------EEKRQGGRGGVV---PPSF 1745
+ M ++ ED G + ++ GKA + +V+ +++ + R + P F
Sbjct: 63 MFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 1746 LTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEA 1805
+ +S V + + K + W K+ ++I D ++ +D + TLLI E
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEF 178
Query: 1806 VVEDSGAYECVAMNNAGEARCEAELV 1831
+D+G YE + ++ G+ + +LV
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKLV 204
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 22/220 (10%)
Query: 1628 RVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVE---FDGDPLPTIKWFREDFPITSSP 1684
R++ S + P V K E+ Q RF ++ G+ + + + I P
Sbjct: 96 RLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA--KVNYIFNEKEIFEGP 153
Query: 1685 DFQIHTFSTKSI--LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV--------EEKRQ 1734
+++H I + M ++ ED G + ++ GKA + +V+ +++ +
Sbjct: 154 KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQKEAE 211
Query: 1735 GGRGGVV---PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKT 1791
R + P F+ +S V + + K + W K+ ++I D ++
Sbjct: 212 FQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF 271
Query: 1792 LEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELV 1831
+D + TLLI E +D+G YE + ++ G+ + +LV
Sbjct: 272 --KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309
>pdb|2CR6|A Chain A, Solution Structure Of The Ig Domain (2998-3100) Of Human
Obscurin
Length = 115
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 925 DLTLAESTLAHFECRLTPTN-DPSMTVEWFHNGKALSAGSRIKTINDF-----GFVILEI 978
D+ + E + A F CR++P N +P V WF + L A +N+ G+ +L +
Sbjct: 22 DVDVQEGSSATFRCRISPANYEP---VHWFLDKTPLHANE----LNEIDAQPGGYHVLTL 74
Query: 979 NDVYLRDSGLYTCKATNKHGEA 1000
+ L+DSG +A ++ A
Sbjct: 75 RQLALKDSGTIYFEAGDQRASA 96
>pdb|3IKC|A Chain A, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|C Chain C, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 218
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 2 EPRADPNLKIEWF---KNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLL 58
+P P L I W ++GVP T DF TL+I+S++A+D A+Y CK +N L
Sbjct: 45 KPGQSPKLLIYWASTRESGVPDRFTGSGSGT-DF---TLTISSVQAEDLAVYYCKQSNNL 100
Query: 59 GEAVSTCTLKIEDRHWLLNKSLRPDALPLI 88
L+I+ R DA P +
Sbjct: 101 RTFGGGTKLEIK----------RADAAPTV 120
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 1759 LARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAM 1818
LA + K + L +YW + +PD R+ FTL I ED Y C
Sbjct: 39 LAWYQQKPGQSPKLLIYWASTRESGVPD-RFTGSGSGTDFTLTISSVQAEDLAVYYCKQS 97
Query: 1819 NN 1820
NN
Sbjct: 98 NN 99
>pdb|3IJY|A Chain A, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|C Chain C, Structure Of S67-27 In Complex With Kdo(2.8)kdo
Length = 218
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 2 EPRADPNLKIEWF---KNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLL 58
+P P L I W ++GVP T DF TL+I+S++A+D A+Y CK +N L
Sbjct: 45 KPGQSPKLLIYWASTRESGVPDRFTGSGSGT-DF---TLTISSVQAEDLAVYYCKQSNNL 100
Query: 59 GEAVSTCTLKIEDRHWLLNKSLRPDALPLI 88
L+I+ R DA P +
Sbjct: 101 RTFGGGTKLEIK----------RADAAPTV 120
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 1759 LARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAM 1818
LA + K + L +YW + +PD R+ FTL I ED Y C
Sbjct: 39 LAWYQQKPGQSPKLLIYWASTRESGVPD-RFTGSGSGTDFTLTISSVQAEDLAVYYCKQS 97
Query: 1819 NN 1820
NN
Sbjct: 98 NN 99
>pdb|3IJH|A Chain A, Structure Of S67-27 In Complex With Ko
pdb|3IJH|C Chain C, Structure Of S67-27 In Complex With Ko
pdb|3IJS|A Chain A, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|C Chain C, Structure Of S67-27 In Complex With Tsbp
Length = 219
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 2 EPRADPNLKIEWF---KNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLL 58
+P P L I W ++GVP T DF TL+I+S++A+D A+Y CK +N L
Sbjct: 45 KPGQSPKLLIYWASTRESGVPDRFTGSGSGT-DF---TLTISSVQAEDLAVYYCKQSNNL 100
Query: 59 GEAVSTCTLKIEDRHWLLNKSLRPDALPLI 88
L+I+ R DA P +
Sbjct: 101 RTFGGGTKLEIK----------RADAAPTV 120
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 1759 LARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAM 1818
LA + K + L +YW + +PD R+ FTL I ED Y C
Sbjct: 39 LAWYQQKPGQSPKLLIYWASTRESGVPD-RFTGSGSGTDFTLTISSVQAEDLAVYYCKQS 97
Query: 1819 NN 1820
NN
Sbjct: 98 NN 99
>pdb|4ELK|B Chain B, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELK|D Chain D, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELM|F Chain F, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
pdb|4ELM|H Chain H, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
Length = 244
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 335 VGDQTMTVEFLYNGKPIEASHRIRTVHAF-----GMVVLEILGTKIEDTGVYTCRATNKW 389
+G Q + YNGK +E S + + L+I T +ED+ VY C A++ W
Sbjct: 40 LGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFC-ASSFW 98
Query: 390 GQ---------AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE 440
G ++V LE D PPK + S + A C T
Sbjct: 99 GAYAEQFFGPGTRLTV-LE--DLRNVTPPKVSLFEPSKAEISHTQKATLVCLATGFYPDH 155
Query: 441 LKVEWFHNGKPI 452
+++ W+ NGK +
Sbjct: 156 VELSWWVNGKEV 167
>pdb|1WAA|E Chain E, Ig27 Protein Domain
Length = 93
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 1644 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 1703
K + F + A FE+E +P +W + P+ +SPD +I K ILI+
Sbjct: 10 KPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEEGKKHILILHNCQ 68
Query: 1704 MEDSGVFAVIAENRGGKAKCSANLVVEE 1731
+ +G + A N K +ANL V+E
Sbjct: 69 LGMTGEVSFQAAN----TKSAANLKVKE 92
>pdb|1WAA|A Chain A, Ig27 Protein Domain
pdb|1WAA|B Chain B, Ig27 Protein Domain
pdb|1WAA|C Chain C, Ig27 Protein Domain
pdb|1WAA|D Chain D, Ig27 Protein Domain
Length = 93
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 1644 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 1703
K + F + A FE+E +P +W + P+ +SPD +I K ILI+
Sbjct: 10 KPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQ 68
Query: 1704 MEDSGVFAVIAENRGGKAKCSANLVVEE 1731
+ +G + A N K +ANL V+E
Sbjct: 69 LGMTGEVSFQAAN----TKSAANLKVKE 92
>pdb|3QIB|C Chain C, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
pdb|3QJF|A Chain A, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|C Chain C, Crystal Structure Of The 2b4 Tcr
Length = 207
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKA--------LSAGS----RIKTI- 968
+P+ L+L E T + C T T V+WF L++G+ R+K+
Sbjct: 9 SPSALSLHEGTGSALRCNFTTT---MRAVQWFQQNSRGSLINLFYLASGTKENGRLKSTF 65
Query: 969 -NDFGFVILEINDVYLRDSGLYTCKATNKHG 998
+ + L I D L DSG Y C A G
Sbjct: 66 NSKESYSTLHIRDAQLEDSGTYFCAALRATG 96
>pdb|3DVG|A Chain A, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
Length = 217
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 733 PTDDPKLKV---EWFWNGKPMK-TGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDY 788
P PKL + ++G P + +GSR T DF L IS + PED Y C+ Y+ Y
Sbjct: 41 PGKAPKLLIYSARSLYSGVPSRFSGSRSGT--DF---TLTISSLQPEDFATYYCQQYSSY 95
Query: 789 GEAVT-SASMKVQGKRSI 805
T KV+ KR++
Sbjct: 96 SSLFTFGQGTKVEIKRTV 113
>pdb|2RQ8|A Chain A, Solution Nmr Structure Of Titin I27 Domain Mutant
Length = 98
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 1644 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 1703
K + F + A FE+E +P +W + P+ +SPD +I K ILI+
Sbjct: 7 KPLPGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQ 65
Query: 1704 MEDSGVFAVIAENRGGKAKCSANLVVEE 1731
+ +G + A N K +ANL V+E
Sbjct: 66 LGMTGEVSFQAAN----TKSAANLKVKE 89
>pdb|3DVN|A Chain A, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|L Chain L, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 217
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 733 PTDDPKLKV---EWFWNGKPMK-TGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDY 788
P PKL + ++G P + +GSR T DF L IS + PED Y C+ Y+ Y
Sbjct: 41 PGKAPKLLIYSASSLYSGVPSRFSGSRSGT--DF---TLTISSLQPEDFATYYCQQYSSY 95
Query: 789 GEAVT-SASMKVQGKRSI 805
T KV+ KR++
Sbjct: 96 SSLFTFGQGTKVEIKRTV 113
>pdb|3U30|C Chain C, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
pdb|3U30|F Chain F, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
Length = 227
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 4 RADPNLKIEWFKNGVPLS----LGSRIRSTFDFGLVT------LSINSLRADDSAIYTCK 53
R P +EW + P S ++ F T L +NSLRA+D+A+Y C
Sbjct: 38 RQAPGKGLEWVASITPSSGQTDYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCA 97
Query: 54 ATNLL 58
T LL
Sbjct: 98 RTWLL 102
>pdb|1MHH|A Chain A, Antibody-Antigen Complex
pdb|1MHH|C Chain C, Antibody-Antigen Complex
Length = 220
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 2 EPRADPNLKIEWF---KNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCK 53
+P P + I W ++GVP R T DF TL+I+S++A+D A+Y CK
Sbjct: 45 KPGQSPKVLIYWASTRESGVPDRFTGRGSGT-DF---TLTISSVQAEDQAVYYCK 95
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 1637 AKPPVFTKKIQPCRAFEQ-------DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH 1689
A+PP KI+ R Q +Q V F G P P + W + P+ +S +
Sbjct: 19 AEPP----KIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVR 73
Query: 1690 TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 1732
T ++ +RQ DSG + + + K + + V EK
Sbjct: 74 TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
>pdb|3SGD|H Chain H, Crystal Structure Of The Mouse Mab 17.2
pdb|3SGD|J Chain J, Crystal Structure Of The Mouse Mab 17.2
pdb|3SGE|H Chain H, Crystal Structure Of Mab 17.2 In Complex With R13 Peptide
pdb|3SGE|J Chain J, Crystal Structure Of Mab 17.2 In Complex With R13 Peptide
Length = 217
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 365 MVVLEILGTKIEDTGVYTC-RATNKWGQAEISVNLECVDKSKGQPP 409
M+ L++ K EDT +Y C R T WGQ L V +K PP
Sbjct: 80 MLYLQMNNLKTEDTAMYYCVRGTTYWGQG----TLVTVSAAKTTPP 121
>pdb|1N64|L Chain L, Crystal Structure Analysis Of The Immunodominant
Antigenic Site On Hepatitis C Virus Protein Bound To
Mab 19d9d6
pdb|1NLB|L Chain L, Crystal Structure Of Anti-Hcv Monoclonal Antibody 19d9d6
pdb|1XCQ|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|E Chain E, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|G Chain G, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCT|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (D55a,
L57h, Y64w) In Space Group P21212
pdb|1XCT|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (D55a,
L57h, Y64w) In Space Group P21212
pdb|1XF5|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (H74c,
Y64w)in Space Group P21212
pdb|1XF5|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (H74c,
Y64w)in Space Group P21212
pdb|1YMH|A Chain A, Anti-hcv Fab 19d9d6 Complexed With Protein L (ppl)
Mutant A66w
pdb|1YMH|C Chain C, Anti-hcv Fab 19d9d6 Complexed With Protein L (ppl)
Mutant A66w
Length = 220
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 2 EPRADPNLKIEWF---KNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCK 53
+P P + I W ++GVP R T DF TL+I+S++A+D A+Y CK
Sbjct: 45 KPGQSPKVLIYWASTRESGVPDRFTGRGSGT-DF---TLTISSVQAEDQAVYYCK 95
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1490 VYPEDSGEYLCRATNLYGMDETRAIL 1515
V P D+G Y+C +N++ MD+ A L
Sbjct: 69 VQPSDAGTYVCTGSNMFAMDQGTATL 94
>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin
Binding Protein C
Length = 104
Score = 31.6 bits (70), Expect = 4.5, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 1729 VEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKI-IPDI 1787
++EK+ + P++ + + +LA DA +V WLKNG++I +
Sbjct: 10 MDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDA--------EVKWLKNGQEIQMSGS 61
Query: 1788 RYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
+Y TL I + + D AY+CV G +C EL V+
Sbjct: 62 KYIFESIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103
>pdb|2COQ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 108
Score = 31.6 bits (70), Expect = 4.7, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 20 LSLGSRIRSTFDFGL--VTLSINSLRADDSAIYTCKA 54
+S+G R T D G +L+I LR +DS Y CKA
Sbjct: 49 ISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKA 85
>pdb|2R69|L Chain L, Crystal Structure Of Fab 1a1d-2 Complexed With E-Diii Of
Dengue Virus At 3.8 Angstrom Resolution
Length = 212
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 14 FKNGVPLSL-GSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNL 57
++G+P GS R+ F TL+IN + ADD A Y C+ TN+
Sbjct: 58 LESGIPTRFSGSGSRTDF-----TLTINPVEADDVATYYCQQTNV 97
>pdb|2R29|L Chain L, Neutralization Of Dengue Virus By A Serotype
Cross-Reactive Antibody Elucidated By Cryoelectron
Microscopy And X-Ray Crystallography
Length = 217
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 14 FKNGVPLSL-GSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNL 57
++G+P GS R+ F TL+IN + ADD A Y C+ TN+
Sbjct: 58 LESGIPTRFSGSGSRTDF-----TLTINPVEADDVATYYCQQTNV 97
>pdb|1YDY|A Chain A, Crystal Structure Of Periplasmic Glycerophosphodiester
Phosphodiesterase From Escherichia Coli
pdb|1YDY|B Chain B, Crystal Structure Of Periplasmic Glycerophosphodiester
Phosphodiesterase From Escherichia Coli
Length = 356
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 27/166 (16%)
Query: 155 PELKVEWFHN--GKPIFHKNRVKMVSDFGFVVMD-IAYVQSHDSGEYVCQWFVNNKPLPA 211
PE+K WFH+ GK I K ++++ +G+ D Y+Q D+ E + N+ P
Sbjct: 170 PEIKAPWFHHQEGKDIAAKT-LEVLKKYGYTGKDDKVYLQCFDADELKR---IKNELEPK 225
Query: 212 GAKFKTTHDFGYVALDIELMLKTLVPFTEWFVNNKPLPAGAKFKTTHDFGYV--ALDIVG 269
+ +EL L L+ +T+W + P G+ +D+ + A+ V
Sbjct: 226 --------------MGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVA 271
Query: 270 AYAEDSG---IYTVKATNSKGSATTSGTLK-CLERLFVNHNYPLFS 311
YA+ G ++ T+ G+ +G ++ + V H Y + S
Sbjct: 272 EYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRS 317
>pdb|1RZF|H Chain H, Crystal Structure Of Human Anti-hiv-1 Gp120-reactive
Antibody E51
Length = 235
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLS-----------INSLRADDSAIYTC 52
R P +EW +P+ S F G VT+S + LR+DD+A+Y C
Sbjct: 38 RQAPGQGLEWMAGIIPIFGSSHYAQKFR-GRVTISADESTRTVYLHLRGLRSDDTAVYYC 96
Query: 53 KATNLLG 59
+ ++ G
Sbjct: 97 ASNSIAG 103
>pdb|2R6P|E Chain E, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
Resolution Cryoem Map Of Fab Complexed With Dengue 2
Virus.
pdb|2R6P|G Chain G, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
Resolution Cryoem Map Of Fab Complexed With Dengue 2
Virus
Length = 206
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 14 FKNGVPLSL-GSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNL 57
++G+P GS R+ F TL+IN + ADD A Y C+ TN+
Sbjct: 58 LESGIPTRFSGSGSRTDF-----TLTINPVEADDVATYYCQQTNV 97
>pdb|3RNK|B Chain B, Crystal Structure Of The Complex Between Mouse Pd-1 Mutant
And Pd-L2 Igv Domain
Length = 104
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 799 VQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSC 837
+Q +R+ +LE QLP G +F I V D GQY C
Sbjct: 49 LQSERATLLEEQLPLGKALF----HIPSVQVRDSGQYRC 83
>pdb|3H3B|C Chain C, Crystal Structure Of The Single-Chain Fv (Scfv) Fragment
Of An Anti- Erbb2 Antibody Cha21 In Complex With
Residues 1-192 Of Erbb2 Extracellular Domain
pdb|3H3B|D Chain D, Crystal Structure Of The Single-Chain Fv (Scfv) Fragment
Of An Anti- Erbb2 Antibody Cha21 In Complex With
Residues 1-192 Of Erbb2 Extracellular Domain
Length = 259
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 2 EPRADPNLKIEWF---KNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCK 53
+P P L I W K+GVP T DF TL+I S++A+D A+Y C+
Sbjct: 50 KPGQSPKLLISWAFTRKSGVPDRFTGSGSGT-DF---TLTIGSVKAEDLAVYYCQ 100
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 20 LSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCTLKIEDRH 73
+ L S + + + LS+N++ D+ IY+C A+N +G +T ++ + H
Sbjct: 230 IPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of Human
Obscurin
Length = 107
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 1735 GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794
G G P F+ + + G A ++++ P++ W K + + RY ++
Sbjct: 1 GSSGSSGPARFIEDVKNQEAREGATAVLQCELNSAAPVE--WRKGSETLRDGDRYSLRQD 58
Query: 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834
L I + D+G Y CV G+ R A L V++
Sbjct: 59 GTKCELQIRGLAMADTGEYSCV----CGQERTSAMLTVRA 94
Score = 30.8 bits (68), Expect = 6.7, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 930 ESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLY 989
E A +C L + + VEW + L G R D L+I + + D+G Y
Sbjct: 22 EGATAVLQCEL----NSAAPVEWRKGSETLRDGDRYSLRQDGTKCELQIRGLAMADTGEY 77
Query: 990 TCKATNKHGEATTSCKLTVKG 1010
+C G+ TS LTV+
Sbjct: 78 SCVC----GQERTSAMLTVRA 94
>pdb|2GJJ|A Chain A, Crystal Structure Of A Single Chain Antibody Sca21
Against Her2ERBB2
pdb|2GJJ|B Chain B, Crystal Structure Of A Single Chain Antibody Sca21
Against Her2ERBB2
Length = 264
Score = 31.2 bits (69), Expect = 5.9, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 2 EPRADPNLKIEWF---KNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCK 53
+P P L I W K+GVP T DF TL+I S++A+D A+Y C+
Sbjct: 49 KPGQSPKLLISWAFTRKSGVPDRFTGSGSGT-DF---TLTIGSVKAEDLAVYYCQ 99
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 1424 PPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYV 1483
P +F ++ ++ E + C+L+ + VEW+ + L +R + D
Sbjct: 19 PIKFTEGLRNEEA-TEGATAVLRCELSKMA----PVEWWKGHETLRDGDRHSLRQDGARC 73
Query: 1484 AMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKP 1521
+ + ED+GEYLC + G + T A+L P
Sbjct: 74 ELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRAMP 107
>pdb|1X44|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Myosin-
Dinding Protein C, Slow-Type
Length = 103
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1773 DVYWLKNGKKIIPD--IRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAEL 1830
+V W KNG++IIP RY+ E L+I A D+ Y + A+ +L
Sbjct: 37 NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 96
>pdb|3EO9|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab
pdb|3EOA|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOA|A Chain A, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOB|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
pdb|3EOB|A Chain A, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
Length = 214
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 733 PTDDPKLKVEWFWNGKPMKTG--SRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGE 790
P PKL + ++G +++G SRF L IS + PED Y C+ +N+Y
Sbjct: 40 PGKAPKLLI---YSGSTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHNEYPL 96
Query: 791 AVTSASMKVQGKRSIILES 809
+ KV+ KR++ S
Sbjct: 97 TFGQGT-KVEIKRTVAAPS 114
>pdb|1WAA|F Chain F, Ig27 Protein Domain
Length = 93
Score = 31.2 bits (69), Expect = 6.5, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 1644 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 1703
K + F + A FE+E +P +W + P+ +SPD +I K ILI+
Sbjct: 10 KPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQ 68
Query: 1704 MEDSGVFAVIAENRGGKAKCSANLVVEE 1731
+ +G + + + K +ANL V+E
Sbjct: 69 LGMTGEVSF----QAAQTKSAANLKVKE 92
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 30.8 bits (68), Expect = 6.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 436 VNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 486
++ P V W+ +G+ + + RV++ V+ + +S D+GEY+C A
Sbjct: 20 LSGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 799 VQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSC 837
+Q +R+ +LE QLP G +F I V D GQY C
Sbjct: 50 LQSERATLLEEQLPLGKALF----HIPSVQVRDSGQYRC 84
>pdb|3BOV|A Chain A, Crystal Structure Of The Receptor Binding Domain Of Mouse
Pd-L2
Length = 105
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 799 VQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSC 837
+Q +R+ +LE QLP G +F I V D GQY C
Sbjct: 50 LQSERATLLEEQLPLGKALF----HIPSVQVRDSGQYRC 84
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 799 VQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSC 837
+Q +R+ +LE QLP G +F I V D GQY C
Sbjct: 49 LQSERATLLEEQLPLGKALF----HIPSVQVRDSGQYRC 83
>pdb|4EI5|D Chain D, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI5|H Chain H, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI6|B Chain B, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
pdb|4EI6|D Chain D, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
Length = 245
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 335 VGDQTMTVEFLYNGKPIEASHRIRTVHAF-----GMVVLEILGTKIEDTGVYTCRATNKW 389
+G Q + YNGK +E S + + L+I T +ED+ VY C A++ W
Sbjct: 40 LGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFC-ASSFW 98
Query: 390 GQ-AEI----SVNLECVDKSKGQ-PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKV 443
G AE L ++ K PP+ S + A C T +++
Sbjct: 99 GAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 158
Query: 444 EWFHNGKPI 452
W+ NGK +
Sbjct: 159 SWWVNGKEV 167
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 30.8 bits (68), Expect = 7.7, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 923 PTDLTLAESTLAHFEC-RLTPTNDPSMTVEWFHNGKALSAG----SRIKTINDFGFV-IL 976
PT L T H C T +P ++WF+NG L+ ++I N + L
Sbjct: 5 PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCL 64
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGID 1015
++++ ++G YT A N++G+ G GID
Sbjct: 65 QLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module) (Ig
18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module) (Ig
18'), Nmr, 30 Structures
Length = 93
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 1638 KPPVFT--KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 1695
KP + T +KI+ F + EV+F G P PT W D +P+ + S+ +
Sbjct: 2 KPKILTASRKIKIKAGFTHN---LEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 1696 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 1730
+ DSG + + +N G+ + ++V+
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,854,454
Number of Sequences: 62578
Number of extensions: 2513479
Number of successful extensions: 12178
Number of sequences better than 100.0: 196
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 9666
Number of HSP's gapped (non-prelim): 2183
length of query: 1884
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1771
effective length of database: 7,902,023
effective search space: 13994482733
effective search space used: 13994482733
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)