Query psy2148
Match_columns 1884
No_of_seqs 597 out of 6124
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 17:30:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 4.6E-68 1.6E-72 693.5 76.9 567 914-1834 3-570 (570)
2 3b43_A Titin; I-SET IG fold, e 100.0 1.1E-64 3.7E-69 661.7 77.7 566 704-1730 3-569 (570)
3 3dmk_A DOWN syndrome cell adhe 100.0 2.7E-65 9.3E-70 702.5 69.3 717 705-1835 37-810 (816)
4 3dmk_A DOWN syndrome cell adhe 100.0 1.1E-64 3.9E-69 696.3 69.8 733 307-1519 38-809 (816)
5 1e07_A Carcinoembryonic antige 100.0 2.9E-59 9.8E-64 623.8 71.7 516 925-1834 120-640 (642)
6 1e07_A Carcinoembryonic antige 100.0 2.8E-57 9.7E-62 604.5 70.5 610 318-1375 9-640 (642)
7 3v2a_R Vascular endothelial gr 100.0 3.8E-54 1.3E-58 590.1 17.5 644 915-1836 30-758 (772)
8 3v2a_R Vascular endothelial gr 100.0 1.7E-52 5.7E-57 573.9 19.3 663 107-1014 30-760 (772)
9 2ocw_A Polymeric-immunoglobuli 100.0 2.9E-42 1E-46 454.7 51.7 475 1064-1836 10-548 (585)
10 2ec8_A MAST/stem cell growth f 100.0 2.2E-44 7.6E-49 467.1 30.3 452 1052-1837 35-513 (524)
11 2ec8_A MAST/stem cell growth f 100.0 2.9E-43 1E-47 456.6 35.5 376 908-1521 28-413 (524)
12 2ocw_A Polymeric-immunoglobuli 100.0 1.2E-41 4.1E-46 448.8 48.9 477 921-1733 5-548 (585)
13 3qs9_E FL cytokine receptor; i 100.0 4.1E-42 1.4E-46 437.3 42.2 396 918-1602 51-447 (527)
14 3qs9_E FL cytokine receptor; i 100.0 3.8E-42 1.3E-46 437.6 41.7 436 1063-1834 57-510 (527)
15 2rcj_C Light chain; immunoglob 100.0 3.2E-40 1.1E-44 427.9 45.1 460 1063-1822 9-512 (523)
16 2rcj_C Light chain; immunoglob 100.0 5.5E-40 1.9E-44 425.7 46.1 427 921-1603 5-468 (523)
17 1z7z_I Intercellular adhesion 100.0 2.2E-40 7.7E-45 420.8 37.7 421 1064-1834 9-449 (450)
18 1z7z_I Intercellular adhesion 100.0 4.3E-40 1.5E-44 418.2 36.9 415 718-1519 10-449 (450)
19 3kld_A Contactin 4, axcam, BIG 100.0 1.3E-38 4.4E-43 393.6 35.4 375 1262-1834 3-383 (384)
20 3kld_A Contactin 4, axcam, BIG 100.0 1.6E-38 5.6E-43 392.7 31.6 369 915-1518 4-382 (384)
21 3laf_A Deleted in colorectal c 100.0 1.9E-37 6.5E-42 388.3 36.3 376 1261-1834 18-401 (403)
22 3qs7_E FL cytokine receptor; i 100.0 2.3E-37 7.9E-42 383.3 32.3 340 1434-1838 57-418 (423)
23 3qs7_E FL cytokine receptor; i 100.0 4.8E-37 1.6E-41 380.5 33.8 365 919-1522 51-417 (423)
24 1cs6_A Axonin-1; neural cell a 100.0 5.5E-37 1.9E-41 380.6 34.1 366 1263-1833 3-381 (382)
25 1bih_A Hemolin; insect immunit 100.0 5.4E-36 1.9E-40 373.9 36.5 377 1261-1832 3-394 (395)
26 3laf_A Deleted in colorectal c 100.0 3.6E-36 1.2E-40 376.7 34.2 372 914-1521 19-403 (403)
27 3p3y_A Neurofascin; IG domains 100.0 3.8E-36 1.3E-40 376.8 34.3 377 1261-1834 13-403 (404)
28 1cs6_A Axonin-1; neural cell a 100.0 1.7E-36 6E-41 376.0 30.7 364 915-1518 3-381 (382)
29 3p3y_A Neurofascin; IG domains 100.0 3.5E-36 1.2E-40 377.1 29.5 375 912-1519 12-403 (404)
30 1bih_A Hemolin; insect immunit 100.0 5.5E-36 1.9E-40 373.9 30.1 379 913-1517 3-394 (395)
31 2v5m_A Dscam; neurobiology SPL 100.0 4.5E-35 1.5E-39 364.4 30.6 360 706-1373 3-387 (388)
32 2rik_A Titin; I-SET IG fold, p 100.0 2.5E-33 8.7E-38 331.4 40.5 281 1423-1834 4-284 (284)
33 2v5m_A Dscam; neurobiology SPL 100.0 1.2E-34 4.1E-39 360.5 30.0 340 1423-1832 2-387 (388)
34 2rik_A Titin; I-SET IG fold, p 100.0 1.9E-32 6.5E-37 323.9 42.0 279 705-1147 4-283 (284)
35 1qgc_4 Protein (immunoglobulin 100.0 1.5E-32 5E-37 347.9 27.2 390 918-1515 3-435 (438)
36 1wio_A CD4, T-cell surface gly 100.0 7.6E-33 2.6E-37 339.7 22.4 333 1273-1833 3-362 (363)
37 1qgc_4 Protein (immunoglobulin 100.0 2.7E-32 9.2E-37 345.4 26.6 388 1266-1831 3-436 (438)
38 1wio_A CD4, T-cell surface gly 100.0 9.9E-32 3.4E-36 329.8 25.5 328 926-1518 4-362 (363)
39 2yd9_A Receptor-type tyrosine- 100.0 5.6E-31 1.9E-35 314.4 30.3 284 1422-1835 4-292 (304)
40 2y25_A Myomesin; structural pr 100.0 2.4E-31 8.1E-36 320.5 24.6 297 1422-1834 5-315 (317)
41 2yd9_A Receptor-type tyrosine- 100.0 3.7E-30 1.3E-34 307.3 29.0 284 705-1152 5-295 (304)
42 2y25_A Myomesin; structural pr 100.0 7.5E-31 2.5E-35 316.2 19.5 302 704-1149 5-316 (317)
43 1qz1_A Neural cell adhesion mo 100.0 6.2E-29 2.1E-33 295.1 34.9 276 1424-1834 2-290 (291)
44 2wim_A N-CAM 2, NCAM2, neural 100.0 4.8E-29 1.6E-33 296.0 30.8 277 1423-1835 3-285 (291)
45 2wim_A N-CAM 2, NCAM2, neural 100.0 8.8E-29 3E-33 293.7 31.8 277 705-1150 3-286 (291)
46 1igt_B IGG2A intact antibody - 100.0 8.1E-29 2.8E-33 313.1 30.4 388 922-1506 6-432 (444)
47 1igt_B IGG2A intact antibody - 100.0 4.7E-29 1.6E-33 315.3 27.7 398 1268-1822 4-433 (444)
48 1qz1_A Neural cell adhesion mo 100.0 2.5E-28 8.5E-33 289.8 32.2 276 706-1148 2-290 (291)
49 2y23_A Myomesin; structural pr 100.0 5.5E-29 1.9E-33 299.0 26.3 296 718-1147 12-311 (312)
50 2y23_A Myomesin; structural pr 100.0 2.5E-28 8.6E-33 293.3 27.0 284 1436-1833 12-311 (312)
51 1hzh_H IGG, immunoglobulin hea 100.0 9.3E-28 3.2E-32 304.4 30.3 382 922-1507 6-442 (457)
52 1hzh_H IGG, immunoglobulin hea 100.0 5E-28 1.7E-32 306.9 26.3 402 1269-1823 5-443 (457)
53 1ry7_B FGFR-3, fibroblast grow 100.0 3.9E-29 1.3E-33 303.3 11.2 297 715-1151 16-330 (334)
54 1iga_A IGA1; immunoglobulin; N 100.0 2.2E-26 7.4E-31 293.0 36.0 388 920-1507 5-442 (475)
55 1ry7_B FGFR-3, fibroblast grow 100.0 1.2E-28 4E-33 299.2 13.1 293 1434-1836 17-329 (334)
56 1iga_A IGA1; immunoglobulin; N 100.0 2.6E-26 9E-31 292.2 34.9 396 1268-1823 5-443 (475)
57 1igy_B IGG1 intact antibody MA 100.0 2.9E-29 1E-33 315.8 7.0 393 1270-1823 5-424 (434)
58 1igy_B IGG1 intact antibody MA 100.0 4.6E-29 1.6E-33 314.0 8.1 385 921-1507 4-423 (434)
59 2o26_X MAST/stem cell growth f 99.9 6.5E-27 2.2E-31 277.0 25.5 268 705-1150 11-290 (290)
60 2o26_X MAST/stem cell growth f 99.9 3E-27 1E-31 280.0 22.0 268 1422-1835 10-289 (290)
61 4dep_C Interleukin-1 receptor 99.9 3.4E-27 1.1E-31 288.1 20.4 286 709-1148 9-333 (349)
62 2jll_A NCAM2, neural cell adhe 99.9 1.1E-24 3.7E-29 270.8 43.2 185 916-1148 1-194 (389)
63 4dep_C Interleukin-1 receptor 99.9 5.4E-27 1.9E-31 286.3 21.1 283 1425-1834 7-333 (349)
64 3ejj_X Macrophage colony-stimu 99.9 4.4E-26 1.5E-30 270.1 28.0 272 1424-1834 4-281 (289)
65 2jll_A NCAM2, neural cell adhe 99.9 9E-25 3.1E-29 271.5 39.9 271 707-1145 2-285 (389)
66 1itb_B Type 1 interleukin-1 re 99.9 2.2E-27 7.6E-32 285.1 15.3 268 717-1147 15-313 (315)
67 4fqp_A Poliovirus receptor; im 99.9 3.9E-26 1.3E-30 273.5 25.6 268 718-1150 11-306 (313)
68 3ejj_X Macrophage colony-stimu 99.9 9.6E-26 3.3E-30 267.2 28.0 268 715-1151 12-284 (289)
69 1itb_B Type 1 interleukin-1 re 99.9 5.7E-27 2E-31 281.5 17.5 274 1434-1834 14-314 (315)
70 4fqp_A Poliovirus receptor; im 99.9 5.4E-26 1.9E-30 272.3 25.6 267 1435-1835 10-305 (313)
71 3oq3_B IFN-alpha/beta binding 99.9 4.3E-26 1.5E-30 274.8 24.8 263 1434-1832 38-328 (329)
72 3oq3_B IFN-alpha/beta binding 99.9 6.7E-26 2.3E-30 273.2 25.7 263 718-1146 40-328 (329)
73 3o4o_C Interleukin-1 receptor 99.9 2.8E-27 9.7E-32 287.4 13.6 286 1422-1833 16-334 (339)
74 4fom_A Poliovirus receptor-rel 99.9 9.9E-27 3.4E-31 278.3 16.1 271 718-1151 10-303 (308)
75 3o4o_C Interleukin-1 receptor 99.9 6.5E-27 2.2E-31 284.3 13.4 284 705-1147 17-334 (339)
76 3u83_A Poliovirus receptor-rel 99.9 3.3E-25 1.1E-29 268.4 26.4 278 705-1151 12-323 (331)
77 2nzi_A Titin; IG-domain, FNIII 99.9 2.9E-24 1E-28 256.6 34.0 278 705-1141 3-283 (305)
78 1zvo_C Myeloma immunoglobulin 99.9 1.1E-23 3.8E-28 268.8 41.4 440 1270-1833 6-504 (512)
79 3u83_A Poliovirus receptor-rel 99.9 1.6E-25 5.4E-30 271.3 22.8 274 1423-1836 12-322 (331)
80 4fom_A Poliovirus receptor-rel 99.9 8.8E-26 3E-30 270.0 19.8 274 1063-1522 8-303 (308)
81 3rjd_A High affinity immunoglo 99.9 6E-25 2.1E-29 256.0 26.3 242 1424-1824 1-249 (262)
82 3rjd_A High affinity immunoglo 99.9 5.7E-25 1.9E-29 256.2 25.5 242 707-1138 2-249 (262)
83 4dkd_C Macrophage colony-stimu 99.9 1.8E-25 6.1E-30 265.3 21.1 277 705-1150 3-283 (292)
84 2nzi_A Titin; IG-domain, FNIII 99.9 2E-24 6.7E-29 258.1 30.2 195 915-1151 3-200 (305)
85 2oz4_A Intercellular adhesion 99.9 1.4E-24 4.7E-29 252.7 26.8 246 1423-1834 5-264 (265)
86 2wng_A Tyrosine-protein phosph 99.9 7.5E-25 2.5E-29 264.2 25.4 267 717-1141 13-312 (327)
87 4dkd_C Macrophage colony-stimu 99.9 2.1E-25 7.3E-30 264.6 19.8 274 1423-1836 3-283 (292)
88 1zvo_C Myeloma immunoglobulin 99.9 2.3E-23 8E-28 265.8 38.6 434 922-1518 6-504 (512)
89 2wng_A Tyrosine-protein phosph 99.9 1.2E-24 4.1E-29 262.5 24.7 278 916-1368 3-312 (327)
90 3mjg_X Beta-type platelet-deri 99.9 2.3E-24 7.8E-29 255.1 22.5 260 1435-1837 10-281 (289)
91 2a38_A Titin; Z1Z2, structural 99.9 1.4E-23 4.8E-28 231.4 26.1 190 1637-1833 3-194 (194)
92 3vh8_G Killer cell immunoglobu 99.9 1.8E-24 6E-29 259.4 19.2 278 703-1150 21-315 (316)
93 3vh8_G Killer cell immunoglobu 99.9 2.3E-24 7.9E-29 258.3 19.0 277 1421-1835 21-314 (316)
94 2oz4_A Intercellular adhesion 99.9 9.1E-24 3.1E-28 245.8 23.3 248 916-1375 6-264 (265)
95 3mjg_X Beta-type platelet-deri 99.9 1.2E-23 4.2E-28 248.8 23.4 275 917-1379 1-282 (289)
96 3rbs_A Myomesin-1; immunoglobu 99.9 2.1E-23 7.1E-28 230.1 20.5 201 916-1147 3-206 (207)
97 2j8h_A Titin, connectin; cardi 99.9 6.4E-23 2.2E-27 226.7 24.4 193 1637-1834 2-197 (197)
98 2a38_A Titin; Z1Z2, structural 99.9 7.4E-23 2.5E-27 225.6 23.0 189 915-1147 4-194 (194)
99 3lcy_A Titin; A-BAND, IG tande 99.9 1.4E-22 4.7E-27 224.2 25.1 189 1636-1834 4-196 (197)
100 3rbs_A Myomesin-1; immunoglobu 99.9 8.1E-23 2.8E-27 225.3 22.4 189 1639-1833 3-206 (207)
101 2j8h_A Titin, connectin; cardi 99.9 2.2E-22 7.4E-27 222.4 24.6 191 915-1147 3-196 (197)
102 2yd6_A PTPRD protein; hydrolas 99.9 4.8E-22 1.6E-26 222.2 27.5 195 1637-1834 4-204 (212)
103 2yd1_A Tyrosine-protein phosph 99.9 5E-22 1.7E-26 222.2 27.1 193 1637-1836 4-202 (212)
104 3lcy_A Titin; A-BAND, IG tande 99.9 3.3E-22 1.1E-26 221.1 23.5 191 914-1148 5-196 (197)
105 2wv3_A Neuroplastin; igcam, me 99.9 1.3E-21 4.5E-26 214.4 27.8 179 1638-1833 2-189 (190)
106 4fa8_A Secreted protein BARF1; 99.9 3.8E-23 1.3E-27 226.1 15.0 171 1647-1827 1-195 (203)
107 2wqr_A IG epsilon chain C regi 99.9 8.7E-23 3E-27 245.2 18.2 282 1422-1823 5-309 (323)
108 2yd6_A PTPRD protein; hydrolas 99.9 1.7E-21 5.9E-26 217.7 26.3 197 914-1150 4-206 (212)
109 2wqr_A IG epsilon chain C regi 99.9 1.7E-22 5.6E-27 242.7 19.3 281 705-1137 6-309 (323)
110 2yd1_A Tyrosine-protein phosph 99.9 2.2E-21 7.5E-26 216.9 26.1 193 915-1150 5-202 (212)
111 1za6_B IGG heavy chain; immuno 99.9 3.4E-22 1.1E-26 242.3 20.9 283 718-1137 11-330 (344)
112 2c5d_C AXL oncogene, tyrosine- 99.9 1.8E-21 6.3E-26 214.4 23.9 178 1638-1832 1-191 (195)
113 2iep_A Muscle-specific kinase 99.9 6.4E-22 2.2E-26 217.7 19.4 184 1636-1834 4-190 (192)
114 2wv3_A Neuroplastin; igcam, me 99.9 5.8E-21 2E-25 209.3 26.4 181 915-1147 2-189 (190)
115 1za6_B IGG heavy chain; immuno 99.9 1.2E-21 4.1E-26 237.5 22.9 182 922-1144 6-213 (344)
116 2r15_A Myomesin-1; sarcomeric 99.9 4.7E-21 1.6E-25 214.6 25.3 182 1653-1834 16-210 (212)
117 2v44_A NCAM2, neural cell adhe 99.9 5.3E-21 1.8E-25 209.5 24.0 179 1641-1833 4-186 (189)
118 4fa8_A Secreted protein BARF1; 99.9 6.5E-22 2.2E-26 216.3 16.3 171 925-1140 2-194 (203)
119 2va4_A NCAM2, N-CAM 2, neural 99.9 1E-20 3.4E-25 208.1 25.6 182 1639-1833 2-192 (192)
120 1epf_A NCAM, protein (neural c 99.9 1.7E-20 5.9E-25 205.9 24.8 181 1639-1832 2-189 (191)
121 2va4_A NCAM2, N-CAM 2, neural 99.9 2E-20 6.7E-25 205.7 25.1 182 916-1147 2-192 (192)
122 1rhf_A Tyrosine-protein kinase 99.9 7.7E-21 2.6E-25 206.7 21.5 176 1639-1833 2-182 (182)
123 2v5t_A NCAM2, N-CAM 2, neural 99.9 8.8E-21 3E-25 207.9 22.1 183 1639-1834 2-188 (189)
124 2r15_A Myomesin-1; sarcomeric 99.9 1.4E-20 4.8E-25 210.8 23.6 195 930-1149 16-211 (212)
125 2c5d_C AXL oncogene, tyrosine- 99.9 2.5E-20 8.6E-25 205.3 23.3 178 916-1146 2-191 (195)
126 2iep_A Muscle-specific kinase 99.9 4.3E-21 1.5E-25 211.0 16.5 185 914-1150 5-192 (192)
127 3grw_A Fibroblast growth facto 99.8 2E-20 6.8E-25 214.4 21.1 194 1638-1837 10-221 (241)
128 3ojm_B Fibroblast growth facto 99.8 1.2E-20 4.1E-25 214.7 18.8 196 1637-1838 13-225 (231)
129 1rhf_A Tyrosine-protein kinase 99.8 3.5E-20 1.2E-24 201.5 21.1 176 916-1147 2-182 (182)
130 2v44_A NCAM2, neural cell adhe 99.8 4E-20 1.4E-24 202.5 21.6 179 918-1147 4-186 (189)
131 2vr9_A Roundabout 1, ROBO; imm 99.8 1.2E-20 4.2E-25 212.0 17.4 187 1636-1834 6-206 (217)
132 2v9r_A Roundabout homolog 1; p 99.8 1E-20 3.6E-25 211.8 16.2 187 1637-1835 7-203 (212)
133 2v5t_A NCAM2, N-CAM 2, neural 99.8 5.4E-20 1.8E-24 201.6 20.8 183 916-1148 2-188 (189)
134 1epf_A NCAM, protein (neural c 99.8 1.2E-19 3.9E-24 199.3 22.9 182 916-1147 2-190 (191)
135 3grw_A Fibroblast growth facto 99.8 5.5E-20 1.9E-24 210.7 20.6 194 915-1152 10-222 (241)
136 3s97_C Contactin-1; carbonic a 99.8 4.3E-20 1.5E-24 204.8 18.8 187 1641-1834 10-201 (201)
137 3ojm_B Fibroblast growth facto 99.8 5.6E-20 1.9E-24 209.1 18.2 197 914-1152 13-225 (231)
138 1f97_A Junction adhesion molec 99.8 3.7E-20 1.3E-24 207.4 16.2 180 1639-1834 1-207 (212)
139 3k0w_A Mucosa-associated lymph 99.8 1.9E-19 6.4E-24 201.9 20.9 181 1637-1835 16-203 (218)
140 3b5h_A Cervical EMMPRIN, HAB18 99.8 3.1E-19 1.1E-23 194.4 20.9 167 1648-1834 7-183 (184)
141 2vr9_A Roundabout 1, ROBO; imm 99.8 6.4E-20 2.2E-24 206.1 15.4 187 914-1148 7-206 (217)
142 3bp6_B Programmed cell death 1 99.8 1.8E-19 6.1E-24 199.6 18.4 182 1642-1836 5-195 (202)
143 2v9r_A Roundabout homolog 1; p 99.8 1.1E-19 3.8E-24 203.5 15.6 190 915-1153 8-207 (212)
144 3sgj_C Human FCG3A receptor; r 99.8 2E-19 6.9E-24 198.1 16.7 169 1638-1837 6-177 (204)
145 3p2t_A Leukocyte immunoglobuli 99.8 2.2E-19 7.4E-24 197.5 15.3 184 1638-1833 4-195 (196)
146 1f97_A Junction adhesion molec 99.8 3.2E-19 1.1E-23 199.8 16.5 181 916-1147 1-206 (212)
147 3k0w_A Mucosa-associated lymph 99.8 9.1E-19 3.1E-23 196.2 19.6 185 914-1148 16-202 (218)
148 3jz7_A MCAR, CAR, coxsackievir 99.8 1.4E-19 4.8E-24 203.0 12.7 177 1644-1834 5-212 (214)
149 2x1w_L Vascular endothelial gr 99.8 4.2E-19 1.4E-23 198.0 16.2 185 922-1152 13-211 (213)
150 2d3v_A Leukocyte immunoglobuli 99.8 1.4E-19 4.9E-24 198.9 11.9 175 1637-1823 3-181 (196)
151 2c1o_A IGK-C protein; FAB frag 99.8 2E-19 6.7E-24 207.6 13.4 217 1490-1824 11-245 (254)
152 2c1o_A IGK-C protein; FAB frag 99.8 3.2E-19 1.1E-23 205.9 15.0 180 916-1138 38-245 (254)
153 1fnl_A Low affinity immunoglob 99.8 1E-18 3.4E-23 188.0 17.8 167 1637-1834 5-174 (175)
154 2ifg_A High affinity nerve gro 99.8 1.8E-19 6.2E-24 218.2 13.1 183 1637-1835 156-346 (347)
155 2x1w_L Vascular endothelial gr 99.8 5.2E-19 1.8E-23 197.3 15.4 179 1646-1836 14-209 (213)
156 3bp6_B Programmed cell death 1 99.8 1.1E-18 3.8E-23 193.2 17.6 180 919-1148 5-193 (202)
157 1f2q_A High affinity immunoglo 99.8 5.1E-19 1.7E-23 190.6 14.2 169 1637-1836 2-173 (176)
158 1ugn_A LIR1, leukocyte immunog 99.8 3.7E-19 1.3E-23 196.0 13.1 185 1637-1833 3-197 (198)
159 3r4d_A CEA-related cell adhesi 99.8 1.9E-18 6.6E-23 192.5 18.8 175 1645-1834 5-200 (208)
160 1vca_A VCAM-D1,2, human vascul 99.8 2.5E-18 8.7E-23 189.0 19.4 173 1649-1835 11-198 (202)
161 3sgj_C Human FCG3A receptor; r 99.8 9E-19 3.1E-23 192.9 15.8 170 915-1151 6-177 (204)
162 1nbq_A JAM, junctional adhesio 99.8 8.9E-20 3E-24 203.7 7.8 179 1639-1833 4-208 (209)
163 3b5h_A Cervical EMMPRIN, HAB18 99.8 5.5E-18 1.9E-22 184.4 21.5 168 926-1148 8-183 (184)
164 3jz7_A MCAR, CAR, coxsackievir 99.8 7.9E-19 2.7E-23 196.9 15.0 179 921-1149 5-213 (214)
165 3p2t_A Leukocyte immunoglobuli 99.8 1.6E-18 5.6E-23 190.5 17.1 173 915-1136 4-179 (196)
166 1uct_A Immunoglobulin alpha FC 99.8 1E-18 3.4E-23 194.5 15.4 184 1637-1835 7-199 (218)
167 3mj8_L Stimulatory hamster ant 99.8 1.2E-18 4.1E-23 195.0 16.0 184 1640-1830 2-209 (213)
168 2gi7_A GPVI protein; IG-like d 99.8 8.7E-19 3E-23 190.1 13.7 162 1636-1822 5-168 (184)
169 3s97_C Contactin-1; carbonic a 99.8 6.2E-19 2.1E-23 195.4 12.8 185 917-1147 9-200 (201)
170 2ny1_B T-cell surface glycopro 99.8 1.1E-18 3.9E-23 189.7 13.3 161 1648-1836 4-181 (184)
171 2fbo_J V1V2;, variable region- 99.8 1.8E-18 6.1E-23 199.4 15.5 182 1642-1832 5-250 (250)
172 2ifg_A High affinity nerve gro 99.8 8.6E-19 2.9E-23 212.2 13.1 183 915-1150 157-347 (347)
173 4f80_A Butyrophilin subfamily 99.8 9.5E-18 3.2E-22 189.4 20.8 178 1645-1834 10-213 (226)
174 1hng_A CD2; T lymphocyte adhes 99.8 1.1E-18 3.9E-23 186.9 12.3 156 1648-1832 5-174 (176)
175 1fnl_A Low affinity immunoglob 99.8 2.9E-18 1E-22 184.3 15.3 166 915-1148 6-174 (175)
176 1oll_A NK receptor; immune sys 99.8 3E-18 1E-22 186.6 14.9 180 1638-1833 3-187 (188)
177 1vca_A VCAM-D1,2, human vascul 99.8 1.4E-17 4.6E-22 183.1 19.5 180 921-1150 5-199 (202)
178 3r4d_A CEA-related cell adhesi 99.8 1.5E-17 5.2E-22 185.2 20.2 177 922-1150 5-202 (208)
179 3mj8_L Stimulatory hamster ant 99.8 5.5E-18 1.9E-22 189.5 16.5 185 917-1143 2-208 (213)
180 2d3v_A Leukocyte immunoglobuli 99.8 5.5E-18 1.9E-22 186.2 15.7 174 915-1137 4-181 (196)
181 1ugn_A LIR1, leukocyte immunog 99.8 2E-18 6.7E-23 190.2 12.0 184 915-1147 4-197 (198)
182 3d9a_L Light chain of hyhel10 99.8 2.4E-18 8.1E-23 192.5 12.8 177 1642-1825 4-204 (213)
183 1hng_A CD2; T lymphocyte adhes 99.8 4E-18 1.4E-22 182.6 14.0 157 926-1146 6-174 (176)
184 2fbo_J V1V2;, variable region- 99.8 4.2E-18 1.4E-22 196.2 15.2 184 919-1145 5-249 (250)
185 1f2q_A High affinity immunoglo 99.8 2.2E-18 7.5E-23 185.6 11.8 170 915-1151 3-174 (176)
186 3ry4_A Low affinity immunoglob 99.8 7.6E-18 2.6E-22 180.5 15.9 164 1638-1832 3-169 (170)
187 3s96_B 3B5H10 FAB light chain; 99.7 7.7E-18 2.6E-22 189.2 16.1 182 1640-1828 2-214 (218)
188 1nbq_A JAM, junctional adhesio 99.7 7.8E-19 2.7E-23 196.1 7.2 179 915-1143 3-202 (209)
189 3nl4_L Antigen binding fragmen 99.7 1.3E-17 4.6E-22 186.4 17.3 172 1640-1818 2-198 (213)
190 1lk3_L 9D7 light chain; antige 99.7 8.7E-18 3E-22 187.2 15.0 172 1646-1824 7-202 (210)
191 4f80_A Butyrophilin subfamily 99.7 2.2E-17 7.6E-22 186.3 18.1 181 922-1148 10-213 (226)
192 2ghw_B Anti-SARS SCFV antibody 99.7 3.9E-17 1.3E-21 187.3 20.5 188 1646-1833 9-241 (247)
193 3mj6_A Junctional adhesion mol 99.7 5.7E-18 1.9E-22 197.4 13.6 202 1640-1874 6-259 (268)
194 2gi7_A GPVI protein; IG-like d 99.7 1E-17 3.5E-22 181.7 14.5 160 915-1136 7-168 (184)
195 3ry4_A Low affinity immunoglob 99.7 1.8E-17 6.2E-22 177.5 15.3 164 916-1146 4-169 (170)
196 1uct_A Immunoglobulin alpha FC 99.7 1.1E-17 3.8E-22 186.1 14.1 182 915-1148 8-198 (218)
197 3sbw_C Programmed cell death 1 99.7 3.3E-17 1.1E-21 184.7 18.2 181 1644-1835 6-212 (222)
198 1jbj_A CD3 epsilon and gamma e 99.7 3.4E-18 1.1E-22 185.4 9.5 154 1650-1824 10-179 (186)
199 2pet_A Lutheran blood group gl 99.7 1.4E-17 4.7E-22 189.2 15.1 183 1644-1833 5-230 (231)
200 3tv3_L PGT128 light chain, IG 99.7 1.2E-17 4.1E-22 186.4 14.3 179 1642-1829 4-206 (211)
201 4frw_A Poliovirus receptor-rel 99.7 1.3E-17 4.3E-22 187.7 14.6 182 1644-1834 4-211 (218)
202 1q0x_L FAB 9B1, light chain; a 99.7 2.8E-17 9.7E-22 183.5 17.1 180 1642-1828 4-209 (212)
203 1nqb_A Single-chain antibody f 99.7 6E-17 2.1E-21 186.0 20.2 181 1644-1834 5-233 (256)
204 2ny1_B T-cell surface glycopro 99.7 8.4E-18 2.9E-22 182.8 12.3 162 925-1151 4-182 (184)
205 1nkr_A P58-CL42 KIR; inhibitor 99.7 5.9E-17 2E-21 178.7 18.7 172 1637-1821 6-184 (201)
206 1f3r_B FV antibody fragment; I 99.7 1.7E-17 5.9E-22 191.1 15.1 190 1646-1835 7-246 (257)
207 2if7_A SLAM family member 6; N 99.7 5.4E-17 1.8E-21 177.1 17.9 162 1645-1829 4-187 (193)
208 1oll_A NK receptor; immune sys 99.7 3.6E-17 1.2E-21 178.1 15.4 168 915-1135 3-172 (188)
209 1dr9_A B7-1 (CD80), T lymphocy 99.7 6.2E-17 2.1E-21 178.9 17.0 171 1648-1830 3-197 (201)
210 2p1y_A Bispecific alpha/beta T 99.7 5.6E-17 1.9E-21 184.9 17.0 179 1642-1821 3-222 (238)
211 2v5y_A Receptor-type tyrosine- 99.7 2.6E-15 8.9E-20 201.6 35.6 175 915-1142 164-348 (731)
212 1p6f_A NKP46, natural cytotoxi 99.7 5.8E-17 2E-21 182.9 16.2 185 1637-1837 5-194 (242)
213 3auv_A SC-DSFV derived from th 99.7 1.4E-16 4.7E-21 185.6 19.9 197 1639-1835 12-255 (276)
214 3sbw_C Programmed cell death 1 99.7 9.4E-17 3.2E-21 180.9 17.9 183 921-1151 6-214 (222)
215 3d9a_L Light chain of hyhel10 99.7 3E-17 1E-21 183.5 13.7 179 918-1139 3-204 (213)
216 4frw_A Poliovirus receptor-rel 99.7 5.5E-17 1.9E-21 182.4 15.9 182 921-1148 4-211 (218)
217 3tv3_L PGT128 light chain, IG 99.7 3E-17 1E-21 183.1 13.6 181 918-1142 3-205 (211)
218 1c1e_H Catalytic antibody 1E9 99.7 4.9E-17 1.7E-21 182.6 15.2 181 1644-1831 5-217 (219)
219 1jbj_A CD3 epsilon and gamma e 99.7 8.1E-18 2.8E-22 182.4 8.4 163 927-1138 10-179 (186)
220 3nl4_L Antigen binding fragmen 99.7 8.5E-17 2.9E-21 179.8 16.9 173 917-1132 2-198 (213)
221 1lk3_L 9D7 light chain; antige 99.7 5.8E-17 2E-21 180.5 15.3 176 919-1138 4-202 (210)
222 3r06_A Anti-mouse CD3epsilon a 99.7 6.1E-17 2.1E-21 181.0 15.4 177 1640-1823 2-202 (213)
223 2pet_A Lutheran blood group gl 99.7 6.8E-17 2.3E-21 183.4 15.5 180 921-1146 5-229 (231)
224 3juy_B 3B3 single chain varian 99.7 1.9E-16 6.4E-21 182.5 19.0 186 1637-1822 4-244 (256)
225 1nfd_E H57 FAB; complex (immun 99.7 6.6E-18 2.2E-22 188.7 6.6 172 1646-1823 6-201 (212)
226 3s96_B 3B5H10 FAB light chain; 99.7 1.1E-16 3.6E-21 179.9 16.4 183 917-1142 2-214 (218)
227 1q0x_L FAB 9B1, light chain; a 99.7 2E-16 6.8E-21 176.6 18.5 180 918-1140 3-207 (212)
228 3uzq_A Anti-dengue MAB 4E11; d 99.7 1E-16 3.5E-21 184.4 16.5 195 1642-1836 4-246 (253)
229 3knb_B Obscurin-like protein 1 99.7 6E-17 2.1E-21 155.3 12.2 98 913-1012 10-107 (107)
230 3sob_L Antibody light chain; b 99.7 1.8E-16 6.3E-21 180.7 18.3 181 1639-1826 24-228 (237)
231 1qok_A MFE-23 recombinant anti 99.7 2.5E-16 8.4E-21 184.1 19.7 192 1642-1834 29-268 (282)
232 1b6u_A KIR2DL3, P58 killer cel 99.7 3E-17 1E-21 186.4 11.0 186 1637-1835 5-202 (257)
233 2xzc_L FAB A.17 light chain; i 99.7 7E-17 2.4E-21 180.8 13.8 173 1646-1825 7-206 (216)
234 4i0k_A CD276 antigen; immunogl 99.7 1.6E-17 5.6E-22 187.1 8.6 181 1647-1836 3-208 (222)
235 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.7 2.5E-16 8.4E-21 181.3 18.6 195 1640-1835 4-249 (256)
236 1moe_A Anti-CEA MAB T84.66; an 99.7 1.8E-16 6.3E-21 180.9 17.3 175 1641-1819 3-219 (240)
237 3umt_A SCFV heavy chain and li 99.7 2.5E-16 8.5E-21 181.5 18.5 191 1646-1836 9-247 (256)
238 3esu_F Antibody 14B7* light ch 99.7 2.4E-16 8.2E-21 181.2 17.9 180 1640-1819 5-231 (250)
239 1f3r_B FV antibody fragment; I 99.7 2E-16 7E-21 182.1 17.2 196 923-1148 7-245 (257)
240 2znx_A SCFV; fluorotryptohpan, 99.7 3.4E-16 1.1E-20 178.4 18.7 184 1641-1824 3-228 (242)
241 1nqb_A Single-chain antibody f 99.7 5.4E-16 1.8E-20 178.0 20.1 182 921-1147 5-232 (256)
242 3gkz_A Anti-methamphetamine si 99.7 5.3E-16 1.8E-20 179.0 20.1 197 1639-1835 8-250 (257)
243 2if7_A SLAM family member 6; N 99.7 6.8E-16 2.3E-20 168.4 19.8 162 922-1141 4-185 (193)
244 3r06_A Anti-mouse CD3epsilon a 99.7 3.2E-16 1.1E-20 175.1 16.8 179 917-1137 2-202 (213)
245 2ghw_B Anti-SARS SCFV antibody 99.7 9E-16 3.1E-20 176.0 20.9 200 917-1147 4-241 (247)
246 3mtr_A N-CAM-1, NCAM-1, neural 99.7 2.6E-16 9.1E-21 175.9 15.6 187 915-1149 18-210 (215)
247 1q9r_B S25-2 FAB (IGG1K) heavy 99.7 1.6E-16 5.4E-21 178.7 13.8 180 1645-1831 6-220 (222)
248 1nkr_A P58-CL42 KIR; inhibitor 99.7 6.8E-16 2.3E-20 170.1 18.6 171 915-1135 7-184 (201)
249 3pv7_A B7-H6, IG-like domain-c 99.7 5E-16 1.7E-20 178.2 18.1 178 1644-1832 8-224 (248)
250 1sy6_A T-cell surface glycopro 99.7 4.5E-17 1.6E-21 179.1 8.7 164 1651-1832 15-202 (204)
251 1dr9_A B7-1 (CD80), T lymphocy 99.7 2.8E-16 9.5E-21 173.6 15.0 174 925-1144 3-197 (201)
252 3auv_A SC-DSFV derived from th 99.7 7.9E-16 2.7E-20 179.2 19.4 187 915-1134 11-235 (276)
253 3knb_B Obscurin-like protein 1 99.7 3E-16 1E-20 150.4 13.0 95 1741-1835 12-106 (107)
254 3bkj_L WO2 IGG2A FAB fragment 99.7 1.8E-16 6.2E-21 182.1 13.8 179 1639-1824 34-241 (252)
255 1c1e_H Catalytic antibody 1E9 99.7 3.7E-16 1.3E-20 175.3 15.9 182 922-1144 6-216 (219)
256 1hnf_A CD2; T lymphocyte adhes 99.7 2.1E-16 7E-21 168.8 13.0 157 1646-1831 6-178 (182)
257 3juy_B 3B3 single chain varian 99.7 9.7E-16 3.3E-20 176.5 19.6 192 915-1136 5-244 (256)
258 1moe_A Anti-CEA MAB T84.66; an 99.7 5E-16 1.7E-20 177.3 17.0 177 917-1134 2-220 (240)
259 3d9a_H Heavy chain of hyhel10 99.7 1.5E-16 5E-21 177.2 12.1 175 1645-1827 6-207 (210)
260 2zg1_A Sialic acid-binding IG- 99.7 4.8E-16 1.6E-20 173.9 16.3 174 1643-1832 4-213 (214)
261 1svz_A Immunoglobulin;, single 99.7 9.3E-16 3.2E-20 175.8 18.5 180 1641-1820 3-228 (247)
262 3mtr_A N-CAM-1, NCAM-1, neural 99.7 5.5E-16 1.9E-20 173.3 16.0 186 1637-1835 17-210 (215)
263 1ccz_A Protein (CD58); LFA-3, 99.7 1.6E-16 5.6E-21 168.6 10.9 156 1647-1831 3-168 (171)
264 3ux9_B SCFV antibody; five hel 99.7 2.6E-15 8.9E-20 173.1 21.9 175 1646-1821 9-236 (256)
265 3sob_L Antibody light chain; b 99.7 6.8E-16 2.3E-20 175.9 16.8 183 916-1141 24-229 (237)
266 1hnf_A CD2; T lymphocyte adhes 99.7 5.2E-16 1.8E-20 165.7 14.6 159 924-1146 7-179 (182)
267 4i0k_A CD276 antigen; immunogl 99.7 1.3E-16 4.6E-21 179.6 10.3 184 924-1152 3-210 (222)
268 2j6e_L IGM, FAB light chain; a 99.7 7.7E-17 2.6E-21 183.2 8.2 177 1646-1828 26-229 (234)
269 1p6f_A NKP46, natural cytotoxi 99.7 7.2E-16 2.5E-20 173.9 16.0 183 915-1150 6-193 (242)
270 4fmk_A Poliovirus receptor-rel 99.7 4.2E-16 1.4E-20 176.1 14.2 177 1646-1832 8-215 (225)
271 3uzq_A Anti-dengue MAB 4E11; d 99.6 1.1E-15 3.9E-20 175.5 17.5 203 919-1151 4-247 (253)
272 1mju_H Immunoglobulin MS6-12; 99.6 7.1E-16 2.4E-20 173.4 15.3 186 1644-1836 5-219 (227)
273 1mq8_A ICAM-1, intercellular a 99.6 3.7E-16 1.3E-20 178.6 12.8 172 927-1150 97-284 (291)
274 2xzc_L FAB A.17 light chain; i 99.6 4.3E-16 1.5E-20 174.4 12.9 175 923-1139 7-206 (216)
275 1qok_A MFE-23 recombinant anti 99.6 2.3E-15 8E-20 175.7 19.7 199 919-1148 29-268 (282)
276 1b6u_A KIR2DL3, P58 killer cel 99.6 7.1E-16 2.4E-20 175.1 14.7 221 307-544 7-240 (257)
277 3mj6_A Junctional adhesion mol 99.6 5.3E-16 1.8E-20 180.7 13.6 185 917-1149 6-238 (268)
278 2fbj_H IGA-kappa J539 FAB (hea 99.6 1.4E-15 4.9E-20 170.1 16.6 173 1646-1825 7-212 (220)
279 2p1y_A Bispecific alpha/beta T 99.6 1.2E-15 4.1E-20 173.8 16.2 182 918-1135 2-222 (238)
280 1dee_B IGM RF 2A2; FAB-IBP com 99.6 4E-15 1.4E-19 166.9 20.0 177 1646-1828 7-221 (223)
281 1nfd_E H57 FAB; complex (immun 99.6 1.1E-16 3.7E-21 178.7 7.2 176 919-1137 3-201 (212)
282 2v5y_A Receptor-type tyrosine- 99.6 7.2E-14 2.5E-18 187.5 36.0 169 930-1151 90-263 (731)
283 3knb_A Titin; IG-like, titin, 99.6 8.8E-16 3E-20 145.4 12.3 94 915-1010 4-99 (100)
284 1pz5_B Heavy chain of FAB (SYA 99.6 1.1E-15 3.8E-20 171.5 15.4 176 1645-1829 6-216 (220)
285 3knb_A Titin; IG-like, titin, 99.6 1.1E-15 3.8E-20 144.6 12.9 94 1741-1834 4-99 (100)
286 2gjj_A A21 single-chain antibo 99.6 2.8E-15 9.5E-20 172.9 18.8 182 1639-1820 5-239 (264)
287 2zg1_A Sialic acid-binding IG- 99.6 1.9E-15 6.4E-20 169.1 16.9 177 920-1145 4-210 (214)
288 4dzb_B Vbeta2 (MAIT T cell rec 99.6 1.3E-15 4.4E-20 174.5 15.9 181 1641-1825 3-222 (246)
289 2znx_A SCFV; fluorotryptohpan, 99.6 3.4E-15 1.2E-19 170.1 19.0 190 917-1138 2-228 (242)
290 2j6e_L IGM, FAB light chain; a 99.6 3.3E-16 1.1E-20 178.0 10.4 182 917-1140 21-227 (234)
291 1gsm_A Madcam-1, mucosal addre 99.6 1.9E-14 6.6E-19 154.2 22.9 159 1649-1825 17-196 (210)
292 1gsm_A Madcam-1, mucosal addre 99.6 2.6E-14 8.8E-19 153.2 23.8 165 926-1142 17-199 (210)
293 1op3_H FAB 2G12, heavy chain; 99.6 1.3E-15 4.3E-20 171.3 14.4 174 1645-1825 6-216 (225)
294 3bkj_L WO2 IGG2A FAB fragment 99.6 9.9E-16 3.4E-20 175.9 13.8 181 915-1138 33-241 (252)
295 3esu_F Antibody 14B7* light ch 99.6 3E-15 1E-19 171.9 17.8 192 916-1133 4-231 (250)
296 3umt_A SCFV heavy chain and li 99.6 4.8E-15 1.6E-19 170.7 19.6 199 923-1150 9-247 (256)
297 2gki_A Nuclease; anti-DNA anti 99.6 2.7E-15 9.3E-20 175.8 17.7 191 1645-1835 28-273 (291)
298 2dru_A Chimera of CD48 antigen 99.6 1.7E-15 5.8E-20 162.3 14.5 154 1647-1830 7-177 (180)
299 1svz_A Immunoglobulin;, single 99.6 3.5E-15 1.2E-19 170.9 17.9 186 917-1134 2-228 (247)
300 4dzb_B Vbeta2 (MAIT T cell rec 99.6 1.3E-15 4.6E-20 174.4 14.3 184 917-1138 2-221 (246)
301 1x9q_A SCFV, 4M5.3 anti-fluore 99.6 4.3E-15 1.5E-19 172.3 18.5 181 1639-1820 15-254 (268)
302 3d9a_H Heavy chain of hyhel10 99.6 1.2E-15 4E-20 169.8 13.2 177 923-1141 7-207 (210)
303 3bqu_C 3H6 FAB light chain; be 99.6 1.4E-16 4.7E-21 181.0 5.5 178 1639-1823 23-224 (233)
304 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.6 3.5E-15 1.2E-19 171.6 17.4 203 916-1147 3-247 (256)
305 1ccz_A Protein (CD58); LFA-3, 99.6 1.4E-15 4.8E-20 161.4 12.9 153 925-1145 4-168 (171)
306 3gkz_A Anti-methamphetamine si 99.6 9.1E-15 3.1E-19 168.5 20.8 202 916-1148 8-249 (257)
307 3bae_H WO2 IGG2A FAB fragment 99.6 1.9E-15 6.7E-20 170.2 14.6 177 1646-1829 7-221 (228)
308 4fmk_A Poliovirus receptor-rel 99.6 2E-15 7E-20 170.5 14.8 179 922-1146 7-215 (225)
309 3eow_R Poliovirus receptor; im 99.6 2.1E-16 7.2E-21 177.6 6.6 176 1646-1832 6-210 (221)
310 3liz_H 4C3 monoclonal antibody 99.6 3.1E-15 1E-19 171.5 16.2 183 1645-1834 6-220 (253)
311 3ux9_B SCFV antibody; five hel 99.6 9.9E-15 3.4E-19 168.2 20.1 188 923-1135 9-236 (256)
312 1q9r_B S25-2 FAB (IGG1K) heavy 99.6 2.8E-15 9.5E-20 168.5 15.0 180 923-1144 7-219 (222)
313 3qib_D 2B4 beta chain; IG doma 99.6 1.2E-15 4.1E-20 177.4 12.1 128 1693-1824 99-245 (270)
314 1dn0_B IGM-kappa cold agglutin 99.6 8.5E-15 2.9E-19 165.1 18.7 184 1645-1834 6-227 (232)
315 1mq8_A ICAM-1, intercellular a 99.6 1.9E-15 6.4E-20 172.8 13.3 249 319-596 10-280 (291)
316 1sy6_A T-cell surface glycopro 99.6 4.3E-16 1.5E-20 171.3 7.8 184 928-1146 15-202 (204)
317 3nl4_H Antigen binding fragmen 99.6 1.6E-15 5.5E-20 169.4 12.4 182 1644-1832 4-212 (215)
318 3pv7_A B7-H6, IG-like domain-c 99.6 1.9E-15 6.3E-20 173.4 13.2 179 921-1146 8-224 (248)
319 3shs_A HOC head outer capsid p 99.6 1.2E-13 4.2E-18 146.1 25.4 167 917-1146 3-181 (304)
320 2gjj_A A21 single-chain antibo 99.6 1.2E-14 3.9E-19 167.7 18.7 191 915-1134 4-239 (264)
321 3omz_A Human vdelta1 gamma del 99.6 2E-15 7E-20 174.2 12.2 197 1639-1835 2-251 (259)
322 3eow_R Poliovirus receptor; im 99.6 8.4E-16 2.9E-20 172.7 8.7 178 922-1145 5-209 (221)
323 2vol_A Murine IGG FC; FC, zinc 99.6 1.5E-15 5E-20 168.1 10.4 176 1641-1822 4-196 (207)
324 2dru_A Chimera of CD48 antigen 99.6 5.1E-15 1.7E-19 158.6 14.2 156 924-1144 7-177 (180)
325 3nl4_H Antigen binding fragmen 99.6 6.3E-15 2.2E-19 164.5 15.3 185 921-1145 4-211 (215)
326 2rgs_A I, IG gamma-2B heavy ch 99.6 7.7E-16 2.6E-20 171.9 7.5 180 1638-1823 8-205 (218)
327 2vol_A Murine IGG FC; FC, zinc 99.6 3.5E-15 1.2E-19 165.1 12.7 178 919-1136 5-196 (207)
328 3m8o_H Immunoglobulin A1 heavy 99.6 1.7E-14 5.8E-19 161.8 18.2 169 1645-1825 6-214 (221)
329 3fku_X Neutralizing antibody F 99.6 3.7E-15 1.3E-19 173.6 13.2 192 1642-1835 4-251 (280)
330 2fbj_H IGA-kappa J539 FAB (hea 99.6 2.1E-14 7E-19 160.6 17.5 173 923-1139 7-212 (220)
331 3qib_D 2B4 beta chain; IG doma 99.6 7E-15 2.4E-19 170.9 13.7 180 917-1136 28-243 (270)
332 3nfj_J T cell receptor beta ch 99.6 2.7E-14 9.2E-19 163.3 18.4 180 1642-1825 4-221 (245)
333 2cqv_A MLCK, myosin light chai 99.6 2.7E-14 9.2E-19 140.1 15.4 103 1740-1842 5-107 (114)
334 1pz5_B Heavy chain of FAB (SYA 99.6 2.4E-14 8.3E-19 160.5 17.0 176 923-1143 7-216 (220)
335 2xqy_G A13-D6.3 monoclonal ant 99.6 1.8E-14 6.2E-19 164.9 16.1 179 1643-1828 10-219 (261)
336 1mju_H Immunoglobulin MS6-12; 99.6 1.3E-14 4.5E-19 163.0 14.7 186 922-1150 6-219 (227)
337 1op3_H FAB 2G12, heavy chain; 99.6 1.4E-14 4.9E-19 162.7 14.8 174 923-1139 7-216 (225)
338 1dee_B IGM RF 2A2; FAB-IBP com 99.6 8.3E-14 2.8E-18 156.1 20.9 179 924-1142 8-221 (223)
339 2rgs_A I, IG gamma-2B heavy ch 99.6 3.4E-15 1.2E-19 166.6 9.6 183 915-1137 8-205 (218)
340 3q5y_A TCR N15 beta; IG, T cel 99.6 1.5E-14 5E-19 164.9 14.7 178 1641-1823 4-213 (240)
341 3bqu_C 3H6 FAB light chain; be 99.6 8.2E-16 2.8E-20 174.5 4.1 178 916-1136 23-223 (233)
342 1x9q_A SCFV, 4M5.3 anti-fluore 99.6 3.7E-14 1.3E-18 164.3 17.8 190 915-1134 14-254 (268)
343 3nfj_J T cell receptor beta ch 99.6 1.9E-14 6.4E-19 164.6 15.0 183 918-1138 3-220 (245)
344 3bn9_D E2 FAB heavy chain; ant 99.6 9.1E-15 3.1E-19 166.4 12.2 176 1645-1827 6-223 (257)
345 1c5d_H Monoclonal antibody aga 99.6 1.4E-14 4.6E-19 161.6 13.4 174 1646-1827 7-209 (215)
346 4ei6_B Vbeta16 XV19 type II na 99.6 1.3E-14 4.4E-19 166.0 13.3 179 1640-1823 3-219 (245)
347 3q5y_A TCR N15 beta; IG, T cel 99.6 3E-14 1E-18 162.3 16.3 180 917-1136 3-212 (240)
348 3fku_X Neutralizing antibody F 99.5 3.3E-14 1.1E-18 165.4 16.3 200 918-1148 3-250 (280)
349 4ei6_B Vbeta16 XV19 type II na 99.5 2.3E-14 7.9E-19 163.9 14.7 180 917-1136 3-218 (245)
350 2gki_A Nuclease; anti-DNA anti 99.5 5.2E-14 1.8E-18 164.9 17.7 196 922-1149 28-273 (291)
351 2cqv_A MLCK, myosin light chai 99.5 3.9E-14 1.3E-18 139.0 13.9 100 915-1016 6-105 (114)
352 3bae_H WO2 IGG2A FAB fragment 99.5 3.2E-14 1.1E-18 160.2 14.6 178 923-1143 7-221 (228)
353 1hxm_B Gamma-delta T-cell rece 99.5 9.6E-14 3.3E-18 157.9 18.4 192 917-1146 2-227 (242)
354 3pl6_D MBP peptide / T-cell re 99.5 3E-14 1E-18 165.4 14.3 180 1639-1823 26-241 (268)
355 3m8o_H Immunoglobulin A1 heavy 99.5 1.2E-13 4.2E-18 154.8 18.8 172 922-1139 6-214 (221)
356 3shs_A HOC head outer capsid p 99.5 4.5E-13 1.6E-17 141.9 21.0 237 318-583 12-279 (304)
357 1hxm_B Gamma-delta T-cell rece 99.5 3.2E-14 1.1E-18 161.8 13.6 187 1641-1832 3-227 (242)
358 3qp3_A Titin; I-SET IG-like, s 99.5 5.7E-14 1.9E-18 135.0 13.3 97 913-1011 5-101 (103)
359 2wbj_D OB TCR; transmembrane, 99.5 8.2E-14 2.8E-18 162.4 17.3 182 1639-1824 24-246 (279)
360 1dn0_B IGM-kappa cold agglutin 99.5 1.9E-13 6.6E-18 154.0 19.0 185 923-1147 7-226 (232)
361 2w59_A IGY FCU3-4; immunoglobu 99.5 1.8E-14 6.3E-19 162.1 10.3 177 1641-1823 15-217 (231)
362 3pl6_D MBP peptide / T-cell re 99.5 6.6E-14 2.3E-18 162.5 15.3 181 916-1136 26-240 (268)
363 1waa_A Titin; metal binding pr 99.5 8.2E-14 2.8E-18 129.4 12.4 89 915-1010 4-92 (93)
364 3omz_A Human vdelta1 gamma del 99.5 2.7E-14 9.2E-19 164.7 11.2 189 916-1134 2-231 (259)
365 2w59_A IGY FCU3-4; immunoglobu 99.5 2.9E-14 9.9E-19 160.5 10.8 182 915-1137 11-217 (231)
366 1l6x_A Immunoglobulin gamma-1 99.5 1.3E-14 4.3E-19 160.7 7.6 176 1642-1823 5-197 (207)
367 2xqy_G A13-D6.3 monoclonal ant 99.5 1.2E-13 4.1E-18 158.1 15.7 179 921-1142 11-219 (261)
368 2yuz_A Myosin-binding protein 99.5 4.3E-14 1.5E-18 133.7 9.7 93 915-1013 6-98 (100)
369 1i1c_A IGG2A, IG gamma-2A chai 99.5 2.7E-14 9.4E-19 160.9 9.6 179 1639-1823 16-211 (239)
370 2wbj_D OB TCR; transmembrane, 99.5 2.4E-13 8.3E-18 158.4 17.5 184 915-1137 23-245 (279)
371 1c5d_H Monoclonal antibody aga 99.5 1.3E-13 4.4E-18 153.6 14.5 178 923-1142 7-210 (215)
372 3qp3_A Titin; I-SET IG-like, s 99.5 2.7E-13 9.2E-18 130.2 14.0 94 1741-1834 7-100 (103)
373 1bec_A 14.3.D T cell antigen r 99.5 5.3E-13 1.8E-17 151.4 18.8 177 919-1135 2-210 (238)
374 1g1c_A Immunoglobulin-like dom 99.5 2.4E-13 8.2E-18 129.5 13.2 94 915-1010 4-98 (99)
375 1l6x_A Immunoglobulin gamma-1 99.5 9.8E-14 3.3E-18 153.5 12.0 180 917-1136 2-196 (207)
376 3puc_A Titin; I-SET IG-like do 99.5 2.7E-13 9.4E-18 129.1 13.2 95 914-1010 4-98 (99)
377 1i1c_A IGG2A, IG gamma-2A chai 99.5 6.9E-14 2.3E-18 157.7 10.2 181 916-1136 16-210 (239)
378 3tv3_H PGT128 heavy chain, IG 99.5 1.8E-13 6.2E-18 155.0 13.6 182 1645-1833 6-236 (239)
379 3irg_B Obscurin-like protein 1 99.5 2.2E-13 7.4E-18 132.0 12.2 98 913-1012 10-107 (107)
380 2lu7_A Obscurin-like protein 1 99.5 7.2E-14 2.5E-18 126.3 7.7 82 922-1010 2-83 (84)
381 3liz_H 4C3 monoclonal antibody 99.5 3.7E-13 1.3E-17 154.1 15.5 184 923-1147 7-219 (253)
382 3bn9_D E2 FAB heavy chain; ant 99.5 1.2E-13 4E-18 157.2 11.1 174 923-1139 7-221 (257)
383 1g1c_A Immunoglobulin-like dom 99.5 5.3E-13 1.8E-17 127.1 14.0 94 1741-1834 4-98 (99)
384 2lvc_A Obscurin-like protein 1 99.5 1.1E-13 3.8E-18 127.3 8.4 87 915-1008 3-91 (91)
385 1wit_A Twitchin 18TH IGSF modu 99.5 3E-13 1E-17 126.8 11.5 90 916-1009 2-93 (93)
386 4acp_A IG gamma-1 chain C regi 99.4 1.3E-13 4.6E-18 154.4 10.5 203 276-491 1-217 (240)
387 3puc_A Titin; I-SET IG-like do 99.4 6.8E-13 2.3E-17 126.4 13.8 94 1741-1834 5-98 (99)
388 1bec_A 14.3.D T cell antigen r 99.4 9.5E-13 3.2E-17 149.3 17.3 177 1642-1823 2-212 (238)
389 3irg_B Obscurin-like protein 1 99.4 5.2E-13 1.8E-17 129.3 13.0 95 1741-1835 12-106 (107)
390 3qhz_H Human monoclonal antibo 99.4 4.6E-13 1.6E-17 151.3 14.6 181 1646-1833 7-228 (232)
391 2kkq_A Myotilin; unknown funct 99.4 6.5E-13 2.2E-17 130.1 13.6 99 913-1013 12-112 (116)
392 3u2s_H PG9 heavy chain; greek 99.4 7.7E-13 2.6E-17 150.2 16.2 183 1644-1833 4-237 (248)
393 1u2h_A APEG-1, aortic preferen 99.4 5.3E-13 1.8E-17 127.1 12.4 94 915-1010 4-98 (99)
394 3to4_D NKT vbeta2 (mouse varia 99.4 1.3E-13 4.4E-18 158.1 9.5 175 1643-1822 5-218 (253)
395 1u2h_A APEG-1, aortic preferen 99.4 6.8E-13 2.3E-17 126.3 12.6 94 1741-1834 4-98 (99)
396 1wit_A Twitchin 18TH IGSF modu 99.4 5.1E-13 1.7E-17 125.2 11.4 90 1742-1833 2-93 (93)
397 1waa_A Titin; metal binding pr 99.4 7.2E-13 2.5E-17 123.0 12.0 89 1741-1834 4-92 (93)
398 2bk8_A Connectin, M1, titin he 99.4 1.7E-12 5.7E-17 122.9 14.7 91 918-1010 3-94 (97)
399 2yuz_A Myosin-binding protein 99.4 2.3E-13 7.8E-18 128.7 8.3 92 1741-1836 6-97 (100)
400 2kdg_A Myotilin; immonoglobuli 99.4 5E-13 1.7E-17 127.5 10.7 95 1741-1835 4-99 (100)
401 3o3u_N Maltose-binding peripla 99.4 3E-13 1E-17 177.0 11.9 165 1647-1823 374-566 (581)
402 1oga_E TRBC1, T-cell receptor 99.4 8.5E-13 2.9E-17 151.1 14.2 179 1641-1824 5-219 (252)
403 2kkq_A Myotilin; unknown funct 99.4 1.4E-12 4.8E-17 127.7 13.5 98 1740-1837 13-112 (116)
404 2kdg_A Myotilin; immonoglobuli 99.4 7.7E-13 2.6E-17 126.2 11.4 95 915-1011 4-99 (100)
405 2dm2_A Palladin; beta-sandwich 99.4 5.4E-13 1.9E-17 129.8 10.5 98 914-1013 6-105 (110)
406 3n9g_H FAB fragment of MAB CR4 99.4 2.3E-12 7.9E-17 145.1 17.1 180 1646-1834 7-225 (230)
407 2e7c_A Myosin-binding protein 99.4 8.4E-13 2.9E-17 130.2 11.8 96 914-1012 19-117 (118)
408 3tv3_H PGT128 heavy chain, IG 99.4 1.6E-12 5.5E-17 147.2 15.6 183 923-1146 7-235 (239)
409 1ypz_F T-cell receptor gamma c 99.4 3.8E-13 1.3E-17 151.3 10.3 178 1642-1823 4-216 (230)
410 2e6q_A Obscurin-like protein 1 99.4 1.2E-12 4E-17 124.6 11.6 92 915-1013 7-108 (112)
411 3irg_A Titin; IG-like, titin, 99.4 1.2E-12 4.1E-17 125.0 11.8 94 915-1010 4-99 (100)
412 3irg_A Titin; IG-like, titin, 99.4 1.5E-12 5E-17 124.4 12.3 94 1741-1834 4-99 (100)
413 2eo9_A Roundabout homolog 1; b 99.4 6.2E-13 2.1E-17 131.3 9.9 110 1741-1870 7-117 (118)
414 4acp_A IG gamma-1 chain C regi 99.4 4.8E-13 1.6E-17 149.9 9.9 179 1638-1822 22-217 (240)
415 1nct_A Titin; cell adhesion, g 99.4 3.7E-13 1.3E-17 129.3 7.8 94 914-1009 12-105 (106)
416 2dm2_A Palladin; beta-sandwich 99.4 7.3E-13 2.5E-17 128.9 9.9 98 1740-1837 6-105 (110)
417 2dav_A SLOW MYBP-C, myosin-bin 99.4 5.4E-13 1.8E-17 129.0 8.7 94 917-1010 8-111 (126)
418 3qhz_H Human monoclonal antibo 99.4 1.6E-12 5.5E-17 146.8 13.8 184 923-1146 7-227 (232)
419 1nct_A Titin; cell adhesion, g 99.4 4.6E-13 1.6E-17 128.6 7.9 95 1739-1833 11-105 (106)
420 3to4_D NKT vbeta2 (mouse varia 99.4 2E-12 6.9E-17 148.1 14.6 188 1268-1506 5-217 (253)
421 2dav_A SLOW MYBP-C, myosin-bin 99.4 5.7E-13 2E-17 128.8 8.4 93 1742-1834 7-111 (126)
422 2bk8_A Connectin, M1, titin he 99.4 3.3E-12 1.1E-16 120.9 13.5 90 1745-1834 4-94 (97)
423 2eny_A Obscurin; beta-sandwich 99.4 7.3E-13 2.5E-17 126.5 8.7 93 915-1013 7-100 (104)
424 2lu7_A Obscurin-like protein 1 99.4 6.9E-13 2.3E-17 119.8 8.0 81 1749-1834 3-83 (84)
425 2e7c_A Myosin-binding protein 99.4 2.4E-12 8.2E-17 126.9 12.6 95 1741-1836 20-117 (118)
426 1oga_E TRBC1, T-cell receptor 99.4 1.1E-12 3.7E-17 150.2 11.6 181 917-1137 4-218 (252)
427 2lvc_A Obscurin-like protein 1 99.4 5.2E-13 1.8E-17 122.9 7.2 87 1741-1832 3-91 (91)
428 1fhg_A Telokin; immunoglobulin 99.4 2.5E-12 8.5E-17 133.7 13.1 103 912-1016 37-140 (154)
429 2edj_A Roundabout homolog 2; K 99.4 1.5E-12 5.2E-17 124.0 10.2 92 1741-1835 7-99 (100)
430 1he7_A High affinity nerve gro 99.4 3.1E-12 1.1E-16 123.4 12.3 93 915-1013 3-102 (126)
431 3o3u_N Maltose-binding peripla 99.4 1.1E-12 3.8E-17 171.5 12.5 169 924-1139 374-568 (581)
432 3u2s_H PG9 heavy chain; greek 99.4 3.6E-12 1.2E-16 144.6 15.0 185 921-1146 4-236 (248)
433 1x44_A Myosin-binding protein 99.4 2.2E-12 7.5E-17 123.5 11.2 91 916-1013 7-99 (103)
434 2dm3_A KIAA0992 protein, palla 99.4 1E-12 3.5E-17 127.9 9.0 99 914-1014 7-106 (110)
435 1fhg_A Telokin; immunoglobulin 99.4 2.2E-12 7.4E-17 134.2 11.8 97 1741-1837 40-137 (154)
436 1he7_A High affinity nerve gro 99.4 3.7E-12 1.3E-16 122.9 12.4 94 1741-1838 3-103 (126)
437 1ypz_E T cell receptor delta, 99.4 5.5E-12 1.9E-16 138.8 15.4 167 1642-1824 4-199 (207)
438 2aty_A Complement receptor chi 99.4 2.6E-12 9E-17 156.1 14.0 176 1641-1822 169-361 (376)
439 1ypz_F T-cell receptor gamma c 99.4 2E-12 6.8E-17 145.4 12.0 182 919-1137 4-216 (230)
440 2edj_A Roundabout homolog 2; K 99.4 1.5E-12 5.3E-17 124.0 9.4 93 914-1011 6-99 (100)
441 1ypz_E T cell receptor delta, 99.4 3.3E-12 1.1E-16 140.5 13.4 170 919-1139 4-200 (207)
442 3iu4_H CHP3 FAB heavy chain; a 99.3 2.7E-12 9.1E-17 147.0 13.0 176 1647-1832 8-222 (263)
443 3kvq_A Vascular endothelial gr 99.3 1.2E-12 4E-17 127.1 8.5 97 913-1013 7-103 (108)
444 1wwb_X Protein (brain derived 99.3 3.2E-12 1.1E-16 121.9 11.2 94 915-1013 3-101 (103)
445 3mlr_H Human monoclonal anti-H 99.3 7.3E-12 2.5E-16 140.3 15.9 176 1646-1830 7-222 (226)
446 2dm3_A KIAA0992 protein, palla 99.3 1.2E-12 4.2E-17 127.4 8.3 97 1741-1837 8-105 (110)
447 3kvq_A Vascular endothelial gr 99.3 1.2E-12 4E-17 127.1 7.9 94 1741-1836 9-102 (108)
448 1gxe_A Myosin binding protein 99.3 2E-12 6.8E-17 129.6 9.7 87 1748-1834 24-139 (139)
449 2edf_A Obscurin; beta-sandwich 99.3 2.1E-12 7.2E-17 123.8 9.5 94 914-1014 6-99 (103)
450 1gxe_A Myosin binding protein 99.3 1.9E-12 6.6E-17 129.7 9.3 85 923-1009 25-138 (139)
451 2ckn_A Basic fibroblast growth 99.3 3.9E-12 1.3E-16 119.6 10.3 87 915-1008 8-94 (95)
452 3sob_H Antibody heavy chain, l 99.3 9.8E-12 3.4E-16 142.5 15.7 179 1647-1834 31-251 (256)
453 2yr3_A Myosin light chain kina 99.3 2.2E-12 7.4E-17 122.7 8.5 92 913-1009 8-99 (99)
454 1ow0_A IG alpha-1 chain C regi 99.3 4.4E-13 1.5E-17 148.9 4.0 173 1640-1822 5-199 (214)
455 2edn_A Myosin-binding protein 99.3 9.2E-13 3.1E-17 125.9 5.6 97 915-1011 11-117 (118)
456 2yuv_A Myosin-binding protein 99.3 7.8E-12 2.7E-16 118.9 12.0 91 915-1012 6-97 (100)
457 1wwb_X Protein (brain derived 99.3 5.7E-12 2E-16 120.1 10.8 93 1741-1836 3-100 (103)
458 2e6p_A Obscurin-like protein 1 99.3 3.7E-12 1.3E-16 122.3 9.5 93 915-1014 6-101 (104)
459 1ow0_A IG alpha-1 chain C regi 99.3 7.6E-13 2.6E-17 147.0 5.3 177 916-1136 3-199 (214)
460 2edh_A Obscurin; structural ge 99.3 6.6E-12 2.3E-16 122.7 11.4 91 915-1013 18-108 (113)
461 3n9g_H FAB fragment of MAB CR4 99.3 2.4E-11 8.2E-16 136.7 17.6 182 923-1147 7-224 (230)
462 2edk_A Myosin-binding protein 99.3 9.9E-13 3.4E-17 125.4 5.2 91 915-1012 7-101 (101)
463 2eo9_A Roundabout homolog 1; b 99.3 3.7E-12 1.3E-16 125.7 9.4 96 914-1014 6-102 (118)
464 2ckn_A Basic fibroblast growth 99.3 6.4E-12 2.2E-16 118.1 10.5 87 1741-1832 8-94 (95)
465 1x44_A Myosin-binding protein 99.3 6.2E-12 2.1E-16 120.4 10.5 92 1741-1837 6-99 (103)
466 2edh_A Obscurin; structural ge 99.3 4.6E-12 1.6E-16 123.8 9.3 104 1718-1836 4-107 (113)
467 2aty_A Complement receptor chi 99.3 1.7E-11 5.8E-16 149.0 16.3 178 920-1136 171-361 (376)
468 3cx2_A Myosin-binding protein 99.3 1.5E-11 5E-16 118.8 12.4 93 915-1009 3-107 (108)
469 2edf_A Obscurin; beta-sandwich 99.3 5.6E-12 1.9E-16 120.8 9.4 92 1741-1837 7-98 (103)
470 2yr3_A Myosin light chain kina 99.3 3.4E-12 1.2E-16 121.4 7.8 90 1741-1833 10-99 (99)
471 2dlt_A Myosin binding protein 99.3 3.5E-12 1.2E-16 122.9 7.9 92 914-1010 6-97 (106)
472 1iam_A ICAM-1, CD54, intercell 99.3 5.3E-11 1.8E-15 124.4 17.0 160 921-1136 4-166 (185)
473 2k1m_A Myosin-binding protein 99.3 1.2E-11 4.3E-16 116.1 10.9 88 915-1009 7-94 (95)
474 2yuv_A Myosin-binding protein 99.3 2.1E-11 7.1E-16 115.9 12.0 90 1741-1835 6-96 (100)
475 2e6p_A Obscurin-like protein 1 99.3 7.7E-12 2.6E-16 120.1 9.1 92 1741-1837 6-100 (104)
476 2eny_A Obscurin; beta-sandwich 99.3 5.2E-12 1.8E-16 120.5 7.3 92 1741-1836 7-99 (104)
477 1pd6_A Cardiac MYBP-C;, myosin 99.3 1.4E-11 4.9E-16 117.3 10.1 91 912-1009 11-103 (104)
478 3cx2_A Myosin-binding protein 99.3 1.9E-11 6.7E-16 118.0 10.8 92 1742-1833 4-107 (108)
479 2cpc_A KIAA0657 protein; immun 99.2 2.4E-11 8.1E-16 118.8 11.6 98 914-1018 8-108 (113)
480 2cr6_A KIAA1556 protein, obscu 99.2 4.5E-12 1.5E-16 124.1 6.4 98 915-1018 12-110 (115)
481 2edn_A Myosin-binding protein 99.2 7E-12 2.4E-16 119.8 7.3 94 1741-1834 11-116 (118)
482 2dku_A KIAA1556 protein; beta- 99.2 1.6E-11 5.5E-16 117.6 9.9 92 915-1013 7-98 (103)
483 1iam_A ICAM-1, CD54, intercell 99.2 1.1E-10 3.7E-15 122.1 16.8 157 1645-1822 5-166 (185)
484 2e6q_A Obscurin-like protein 1 99.2 3.1E-11 1.1E-15 114.7 11.4 91 1741-1836 7-107 (112)
485 2edk_A Myosin-binding protein 99.2 3.8E-12 1.3E-16 121.3 5.1 90 1741-1835 7-100 (101)
486 2e7b_A Obscurin; IG-like domai 99.2 1.1E-11 3.9E-16 118.6 8.1 92 915-1013 7-98 (103)
487 2dlt_A Myosin binding protein 99.2 1.2E-11 4.2E-16 119.0 8.3 91 1741-1834 7-97 (106)
488 3caf_A Fibroblast growth facto 99.2 1.8E-11 6E-16 116.7 9.2 90 915-1008 3-99 (100)
489 1hxm_A Gamma-delta T-cell rece 99.2 9.5E-11 3.3E-15 130.3 16.2 168 1642-1823 4-199 (229)
490 2cr6_A KIAA1556 protein, obscu 99.2 3.4E-12 1.1E-16 125.0 3.9 92 1741-1836 12-104 (115)
491 2k1m_A Myosin-binding protein 99.2 2.4E-11 8.3E-16 114.1 9.5 89 1741-1834 7-95 (95)
492 3caf_A Fibroblast growth facto 99.2 2.1E-11 7.2E-16 116.1 9.2 91 1741-1833 3-100 (100)
493 2dm7_A KIAA1556 protein; beta- 99.2 2.2E-11 7.5E-16 117.9 8.9 89 1741-1835 7-95 (108)
494 2cry_A KIN of IRRE-like protei 99.2 5E-12 1.7E-16 125.6 4.3 100 909-1011 7-114 (122)
495 2cry_A KIN of IRRE-like protei 99.2 1E-12 3.4E-17 130.6 -0.8 94 1741-1835 13-114 (122)
496 3sob_H Antibody heavy chain, l 99.2 1.9E-10 6.5E-15 131.7 18.0 198 1271-1518 30-250 (256)
497 1wwc_A Protein (NT-3 growth fa 99.2 6E-11 2.1E-15 116.8 11.9 97 912-1013 4-104 (118)
498 3s35_X Vascular endothelial gr 99.2 7.7E-11 2.6E-15 117.1 12.7 98 921-1018 13-118 (122)
499 3mlr_H Human monoclonal anti-H 99.2 1.6E-10 5.4E-15 129.4 16.7 195 1271-1515 7-222 (226)
500 2dm7_A KIAA1556 protein; beta- 99.2 3.8E-11 1.3E-15 116.2 10.0 92 914-1013 6-97 (108)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=4.6e-68 Score=693.51 Aligned_cols=567 Identities=25% Similarity=0.444 Sum_probs=482.6
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
..||.|+.++.++.+.+|+.++|.|.+. |.|.+.|+|+|||..|..+.++.+...++..+|.|.+++.+|+|.|+|.|
T Consensus 3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~--g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 80 (570)
T 3b43_A 3 MEPPYFIEPLEHVEAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKA 80 (570)
T ss_dssp CCCCEEEECCCCEEECTTSCEEEEEEEE--SSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCcceEECCceEEcCCCEEEEEEEEc--cCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEE
Confidence 4689999999999999999999999998 77889999999999999888988887777889999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
.|..|.....+.|.|...+ .+|.|...+.+ +.+.+|+.+.
T Consensus 81 ~N~~g~~~~~~~l~v~~~~---------------------------------------~~p~~~~~~~~-~~~~~G~~v~ 120 (570)
T 3b43_A 81 ENSVGAVASSAVLVIKERK---------------------------------------LPPSFARKLKD-VHETLGFPVA 120 (570)
T ss_dssp EETTEEEEEEEEEEECCCC---------------------------------------CCCEESSCCCC-EEEETTSCEE
T ss_pred EeCCceEEEEEEEEECCCC---------------------------------------CCCcccccCCC-eEecCCCeEE
Confidence 9999999888888886321 35566555544 5667899999
Q ss_pred EEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeeccccc
Q psy2148 1074 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHDIV 1153 (1884)
Q Consensus 1074 l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~~~ 1153 (1884)
|.|.+. |.|.+.|.|+|||+.+..+.++..........|.|.++..+|+|.|+|.|.|..|....++.|.|...
T Consensus 121 l~C~~~--g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~---- 194 (570)
T 3b43_A 121 FECRIN--GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH---- 194 (570)
T ss_dssp EEEEEE--SSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC----
T ss_pred EEEEEc--cCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCC----
Confidence 999997 78889999999999998877776665666778999999999999999999999999988888877521
Q ss_pred cccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhcccccccccccccccccc
Q psy2148 1154 TESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQ 1233 (1884)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 (1884)
T Consensus 195 -------------------------------------------------------------------------------- 194 (570)
T 3b43_A 195 -------------------------------------------------------------------------------- 194 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccc
Q psy2148 1234 LPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINI 1313 (1884)
Q Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~ 1313 (1884)
..||.|...+.+..+.+|+.++|.|.+.+ .|.+.+.|+|++..+.....
T Consensus 195 ----------------------------~~pp~~~~~p~~~~v~~G~~~~l~C~~~g--~p~p~i~W~k~g~~i~~~~~- 243 (570)
T 3b43_A 195 ----------------------------EVPPFFDLKPVSVDLALGESGTFKCHVTG--TAPIKITWAKDNREIRPGGN- 243 (570)
T ss_dssp ----------------------------CCCCEEEECCCCBCCBSBSCEEEEEEEES--SSCCEEEEEETTEECCTTSS-
T ss_pred ----------------------------CCCCccccCCceeEecCCCeEEEEEEEEE--CCCCEEEEEECCEECcCCCc-
Confidence 13566666677788999999999999985 47789999999987754421
Q ss_pred cceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCceeecccCCcchhhhH
Q psy2148 1314 STAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLKTE 1393 (1884)
Q Consensus 1314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~ 1393 (1884)
+......+...|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 244 ----------------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~------------------ 289 (570)
T 3b43_A 244 ----------------YKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------------------ 289 (570)
T ss_dssp ----------------EEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBC------------------
T ss_pred ----------------EEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeec------------------
Confidence 1111233456899999999999999999999999988888887754
Q ss_pred HHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCC
Q psy2148 1394 ALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNR 1473 (1884)
Q Consensus 1394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~ 1473 (1884)
||.|...+.+...+.+|+.+.|.|.+. |.|.|.|.|+|+|..+..+.+
T Consensus 290 ------------------------------~p~~~~~~~~~~~v~~g~~~~l~C~~~--g~P~p~v~W~k~~~~l~~~~~ 337 (570)
T 3b43_A 290 ------------------------------PPRFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESSK 337 (570)
T ss_dssp ------------------------------CCEEEECCCSBCCEESSCEEEEEEEEE--SSSSCEEEEEETTEECCCSSS
T ss_pred ------------------------------CCcccccCCCccEEcCCCcEEEEEEEe--eCCCCEEEEeECCEECCCCCc
Confidence 455555555555678999999999997 999999999999999998888
Q ss_pred ceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccc
Q psy2148 1474 FNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQL 1553 (1884)
Q Consensus 1474 ~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1553 (1884)
+.+...++...|.|.++..+|+|.|+|.|.|.+|....++.|.|..+
T Consensus 338 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~--------------------------------- 384 (570)
T 3b43_A 338 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP--------------------------------- 384 (570)
T ss_dssp EEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECC---------------------------------
T ss_pred EEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCC---------------------------------
Confidence 88777778889999999999999999999999999988888887542
Q ss_pred cccCCCCCCCeEecCCcccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecC
Q psy2148 1554 VEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDAS 1633 (1884)
Q Consensus 1554 ~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1633 (1884)
|.|...+
T Consensus 385 ---------P~~~~~~---------------------------------------------------------------- 391 (570)
T 3b43_A 385 ---------PVFRKKP---------------------------------------------------------------- 391 (570)
T ss_dssp ---------CEECSCC----------------------------------------------------------------
T ss_pred ---------CeeecCC----------------------------------------------------------------
Confidence 3332222
Q ss_pred CCCCCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEE
Q psy2148 1634 EKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI 1713 (1884)
Q Consensus 1634 ~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~ 1713 (1884)
....+.+|+++.|.|.+.|.|.|.++|+|+|..+..+.++.+...+...+|.|.++..+|+|.|+|.
T Consensus 392 -------------~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 458 (570)
T 3b43_A 392 -------------HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 458 (570)
T ss_dssp -------------CCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred -------------CceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEE
Confidence 2234557788888888888898999999999998888888887777778999999999999999999
Q ss_pred EEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEec-CCCCCeEEe
Q psy2148 1714 AENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKI-IPDIRYKTL 1792 (1884)
Q Consensus 1714 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l-~~~~~~~~~ 1792 (1884)
|.|..|...+.+.|.|. .||.|...+.+..+.+|+.++|.|.+.|.|.|.|.|+|++..+ ..+.++.+.
T Consensus 459 A~N~~G~~~~~~~l~v~----------~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~ 528 (570)
T 3b43_A 459 ASNDVGSDTCVGSITLK----------APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWIS 528 (570)
T ss_dssp EECSSCEEEEEEEEEEC----------CCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEEC
T ss_pred EEECCCeEEEEEEEEec----------cCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEE
Confidence 99999999999999997 5899999999999999999999999999999999999998655 456677777
Q ss_pred ecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1793 EEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1793 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
..++...|.|.++..+|+|.|+|.|.|.+|.++++++|.|.+
T Consensus 529 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~e 570 (570)
T 3b43_A 529 YSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570 (570)
T ss_dssp CCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred ECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEeC
Confidence 777788999999999999999999999999999999999863
No 2
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.1e-64 Score=661.70 Aligned_cols=566 Identities=22% Similarity=0.399 Sum_probs=462.1
Q ss_pred cCCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEE
Q psy2148 704 RQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCR 783 (1884)
Q Consensus 704 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 783 (1884)
..+|.|..++.+. .+.+|++++|.|.+. |.|.+.++|+|||..|....++++...++...|.|.+++.+|+|.|+|.
T Consensus 3 ~~pP~f~~~~~~~-~v~~G~~v~L~C~~~--g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 79 (570)
T 3b43_A 3 MEPPYFIEPLEHV-EAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCK 79 (570)
T ss_dssp CCCCEEEECCCCE-EECTTSCEEEEEEEE--SSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCcceEECCce-EEcCCCEEEEEEEEc--cCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEE
Confidence 3678888776665 689999999999998 6888999999999999888888887777788999999999999999999
Q ss_pred EEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEe
Q psy2148 784 AYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILE 863 (1884)
Q Consensus 784 a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~ 863 (1884)
|.|..|.....+.|.|...
T Consensus 80 a~N~~g~~~~~~~l~v~~~------------------------------------------------------------- 98 (570)
T 3b43_A 80 AENSVGAVASSAVLVIKER------------------------------------------------------------- 98 (570)
T ss_dssp EEETTEEEEEEEEEEECCC-------------------------------------------------------------
T ss_pred EEeCCceEEEEEEEEECCC-------------------------------------------------------------
Confidence 9999998877776655210
Q ss_pred ecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEEeeC
Q psy2148 864 SQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPT 943 (1884)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~ 943 (1884)
..+|.|...+.++.+.+|+++.|.|.+.
T Consensus 99 --------------------------------------------------~~~p~~~~~~~~~~~~~G~~v~l~C~~~-- 126 (570)
T 3b43_A 99 --------------------------------------------------KLPPSFARKLKDVHETLGFPVAFECRIN-- 126 (570)
T ss_dssp --------------------------------------------------CCCCEESSCCCCEEEETTSCEEEEEEEE--
T ss_pred --------------------------------------------------CCCCcccccCCCeEecCCCeEEEEEEEc--
Confidence 1357777777888899999999999998
Q ss_pred CCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHh
Q psy2148 944 NDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAI 1023 (1884)
Q Consensus 944 ~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~ 1023 (1884)
|.|++.|+|+|||..|..+.++......+..+|.|.++..+|+|.|+|.|.|..|..+.++.|.|....
T Consensus 127 g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~----------- 195 (570)
T 3b43_A 127 GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE----------- 195 (570)
T ss_dssp SSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----------
T ss_pred cCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCC-----------
Confidence 678889999999999998888776666667789999999999999999999999999999999986421
Q ss_pred HhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCce
Q psy2148 1024 FANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRV 1103 (1884)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~ 1103 (1884)
.||.|...... +.+.+|+.+.|.|.+. |.|.+.|+|+|+|..+..+.++
T Consensus 196 ----------------------------~pp~~~~~p~~-~~v~~G~~~~l~C~~~--g~p~p~i~W~k~g~~i~~~~~~ 244 (570)
T 3b43_A 196 ----------------------------VPPFFDLKPVS-VDLALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNY 244 (570)
T ss_dssp ----------------------------CCCEEEECCCC-BCCBSBSCEEEEEEEE--SSSCCEEEEEETTEECCTTSSE
T ss_pred ----------------------------CCCccccCCce-eEecCCCeEEEEEEEE--ECCCCEEEEEECCEECcCCCcE
Confidence 35555544433 6788999999999997 8888999999999999888887
Q ss_pred EEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCC
Q psy2148 1104 KTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDE 1183 (1884)
Q Consensus 1104 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1183 (1884)
.+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus 245 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~-------------------------------- 292 (570)
T 3b43_A 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR-------------------------------- 292 (570)
T ss_dssp EEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCE--------------------------------
T ss_pred EEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCc--------------------------------
Confidence 776666677999999999999999999999999998888887764332
Q ss_pred CCCCCCccccchhcccccccccccchhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCC
Q psy2148 1184 IPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEE 1263 (1884)
Q Consensus 1184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 (1884)
T Consensus 293 -------------------------------------------------------------------------------- 292 (570)
T 3b43_A 293 -------------------------------------------------------------------------------- 292 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeEeec-ceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEE
Q psy2148 1264 PPRFITEI-ESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLD 1342 (1884)
Q Consensus 1264 ~p~~~~~~-~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 1342 (1884)
|...+ ....+.+|+.+.|.|.+.| .|.+.+.|+|++..+..... ...........|.
T Consensus 293 ---~~~~~~~~~~v~~g~~~~l~C~~~g--~P~p~v~W~k~~~~l~~~~~-----------------~~~~~~~~~~~L~ 350 (570)
T 3b43_A 293 ---FIKKLEPSRIVKQDEHTRYECKIGG--SPEIKVLWYKDETEIQESSK-----------------FRMSFVESVAVLE 350 (570)
T ss_dssp ---EEECCCSBCCEESSCEEEEEEEEES--SSSCEEEEEETTEECCCSSS-----------------EEEEEETTEEEEE
T ss_pred ---ccccCCCccEEcCCCcEEEEEEEee--CCCCEEEEeECCEECCCCCc-----------------EEEEEECCEEEEE
Confidence 22221 1235789999999999985 58889999999987754421 1111233456899
Q ss_pred EeeecccCceEEEEEEEccccceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccC
Q psy2148 1343 IDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKK 1422 (1884)
Q Consensus 1343 I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1422 (1884)
|.++..+|+|.|+|.|.|.+|....++.|.|..+|.+
T Consensus 351 i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~------------------------------------------- 387 (570)
T 3b43_A 351 MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF------------------------------------------- 387 (570)
T ss_dssp EESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEE-------------------------------------------
T ss_pred ECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCee-------------------------------------------
Confidence 9999999999999999999999999999998766653
Q ss_pred CCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEE
Q psy2148 1423 QPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRA 1502 (1884)
Q Consensus 1423 ~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a 1502 (1884)
...+.+ ..+.+|+.+.|.|.+. |.|.|.|+|+|+|..|..+.++.+...+...+|.|.++..+|+|.|+|.|
T Consensus 388 -----~~~~~~-~~~~~G~~v~l~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A 459 (570)
T 3b43_A 388 -----RKKPHP-VETLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 459 (570)
T ss_dssp -----CSCCCC-EEECTTCCEEEEEEEE--SSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred -----ecCCCc-eeecCCCEEEEEEEEe--cCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEE
Confidence 222222 2367899999999997 99999999999999999888888777777789999999999999999999
Q ss_pred EecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEE
Q psy2148 1503 TNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARF 1582 (1884)
Q Consensus 1503 ~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l 1582 (1884)
.|.+|.....+.|.|.. ||.|...+.+..+.+|+++.|
T Consensus 460 ~N~~G~~~~~~~l~v~~------------------------------------------~P~~~~~~~~~~~~~g~~~~l 497 (570)
T 3b43_A 460 SNDVGSDTCVGSITLKA------------------------------------------PPRFVKKLSDISTVVGEEVQL 497 (570)
T ss_dssp ECSSCEEEEEEEEEECC------------------------------------------CCEEEECCCCBCCBTTCCEEE
T ss_pred EECCCeEEEEEEEEecc------------------------------------------CCcccccCCCceecCCCeEEE
Confidence 99999998888888753 566777777777777777777
Q ss_pred EEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEE
Q psy2148 1583 CTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVE 1662 (1884)
Q Consensus 1583 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 1662 (1884)
.|.+.|.|.|.++|++||..+
T Consensus 498 ~c~~~g~p~~~v~W~k~~~~~----------------------------------------------------------- 518 (570)
T 3b43_A 498 QATIEGAEPISVAWFKDKGEI----------------------------------------------------------- 518 (570)
T ss_dssp EEEEESCSSCCCEEEETTEEC-----------------------------------------------------------
T ss_pred EEEEecCCCCEEEEEeCCeEe-----------------------------------------------------------
Confidence 777776666666666665432
Q ss_pred EeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy2148 1663 FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 1730 (1884)
Q Consensus 1663 ~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~ 1730 (1884)
+..+.++.+...++.++|.|.++..+|+|.|+|.|.|..|...+++.|.|.
T Consensus 519 -----------------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~ 569 (570)
T 3b43_A 519 -----------------VRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569 (570)
T ss_dssp -----------------CCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred -----------------ccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence 122223333333456789999999999999999999999999999999885
No 3
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-65 Score=702.53 Aligned_cols=717 Identities=20% Similarity=0.282 Sum_probs=542.9
Q ss_pred CCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEee-CCccCCCCCCeEEEeeCCEEEEEEcccCcCC------C
Q psy2148 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFW-NGKPMKTGSRFRTFCDFGFVILEISPVYPED------C 777 (1884)
Q Consensus 705 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d------~ 777 (1884)
.+|.|...+.+...+.+|+.++|.|.+. |.|.|+++|+| ||+.+....+......++ +|.|.++..+| +
T Consensus 37 ~~P~~~~~p~~~~~~~~g~~~~l~C~a~--g~p~p~~~W~k~~g~~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~~~d~ 112 (816)
T 3dmk_A 37 KGPVFLKEPTNRIDFSNSTGAEIECKAS--GNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHA 112 (816)
T ss_dssp EEEEEEECCCSEEEEETTTCEEEECEEE--EESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHHHE
T ss_pred CCCcEEeCCCCeEEEECCCCeEEEeeec--CCCCCEEEEEeCCCCCccCCCceEEEeeCC--cEEEcCCChHHccccccc
Confidence 5678888777766789999999999998 58889999999 899887555544443333 68899988886 8
Q ss_pred eEEEEEEEecCceE-EEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEec
Q psy2148 778 GQYSCRAYNDYGEA-VTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQG 856 (1884)
Q Consensus 778 G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~ 856 (1884)
|.|+|.|.|..|.. +..+.|.+.
T Consensus 113 G~Y~C~a~n~~G~~~S~~~~v~~~-------------------------------------------------------- 136 (816)
T 3dmk_A 113 QVYACLARNQFGSIISRDVHVRAV-------------------------------------------------------- 136 (816)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEE--------------------------------------------------------
T ss_pred eEEEEEEecCcceEEccceEEEEE--------------------------------------------------------
Confidence 99999999999976 444443321
Q ss_pred ccceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEE
Q psy2148 857 KRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHF 936 (1884)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l 936 (1884)
.++.+...+.+..+.+|+++.|
T Consensus 137 ----------------------------------------------------------~~~~~~~~~~~~~v~~G~~v~L 158 (816)
T 3dmk_A 137 ----------------------------------------------------------VAQYYEADVNKEHVIRGNSAVI 158 (816)
T ss_dssp ----------------------------------------------------------CCCCCCCBCCCEEEETTSCEEE
T ss_pred ----------------------------------------------------------EccccEEEEecceEecCceEEE
Confidence 1122233445567889999999
Q ss_pred EEEEeeCCCCC--cEEEEeeCCEEcc-----CCCcEEEEeeCCeEEEEEccCCCCCC-eEEEEEEEcCCee-EEE---EE
Q psy2148 937 ECRLTPTNDPS--MTVEWFHNGKALS-----AGSRIKTINDFGFVILEINDVYLRDS-GLYTCKATNKHGE-ATT---SC 1004 (1884)
Q Consensus 937 ~C~v~~~~~P~--~~v~W~~~g~~i~-----~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~G~-~~~---~~ 1004 (1884)
.|.+.+ ..|. +.+.|++++..+. .+.|+.+..++ .|.|.+++.+|+ |.|+|.|.|..+. ... ..
T Consensus 159 ~C~~~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~ 234 (816)
T 3dmk_A 159 KCLIPS-FVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKG 234 (816)
T ss_dssp CCBCCH-HHHTTEEEEEEEETTSCEECBSSCBTTTEEECTTS---CEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCE
T ss_pred EECCCc-cccccEEEEEEEecCceEeccccCCCceEEEecCc---eEEEecCChhhccceeEEEEeeeeeeeeeeccccc
Confidence 998853 2222 6899999887653 35677765544 599999999998 9999999986543 222 23
Q ss_pred EEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecC-CCcCcCCCCcEEEEEEEeeCCC
Q psy2148 1005 KLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQ-DNLDVPEAGKVHFDCRLEPKSD 1083 (1884)
Q Consensus 1005 ~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~v~~g~~~~l~C~v~~~~~ 1083 (1884)
.|.|..+.. ..+|.+..... ....+.+|+.+.|.|.+. |.
T Consensus 235 ~l~v~~~~~-------------------------------------~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~--g~ 275 (816)
T 3dmk_A 235 RLVITEPIS-------------------------------------SAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--GY 275 (816)
T ss_dssp EEEEECCCS-------------------------------------CCCCBCCGGGGEEEEEECTTSCEEECCCCB--CS
T ss_pred ceEEeCCCC-------------------------------------CCCCccccccCccceEEeCCCeEEEEEEee--ec
Confidence 555653211 02333322111 235678999999999997 88
Q ss_pred CCcEEEEEECCEec------cCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeeccccccccc
Q psy2148 1084 PTMRIDWFFNGRPF------ATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHDIVTESQ 1157 (1884)
Q Consensus 1084 p~~~v~W~k~~~~l------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~~~~~~~ 1157 (1884)
|.+.|.|+|++... ..+.+... .. ..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..++
T Consensus 276 p~p~v~W~k~~~~~~~~~~~~~~~~~~~--~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~------- 344 (816)
T 3dmk_A 276 PVPVFRWYKFIEGTTRKQAVVLNDRVKQ--VS--GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL------- 344 (816)
T ss_dssp SCCEEEEEEECTTSSCEEECCCSSSEEE--ET--TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE-------
T ss_pred CCCeEEEEeCCCCCccCcceecCCceEe--cc--ceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCC-------
Confidence 99999999964322 22233221 22 279999999999999999999999998888888776432
Q ss_pred cCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccccccccccccCCCc
Q psy2148 1158 LPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQLPDS 1237 (1884)
Q Consensus 1158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 (1884)
T Consensus 345 -------------------------------------------------------------------------------- 344 (816)
T 3dmk_A 345 -------------------------------------------------------------------------------- 344 (816)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceE
Q psy2148 1238 MSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAF 1317 (1884)
Q Consensus 1238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 1317 (1884)
.+...+....+.+|++++|.|.+.+. |.+.+.|++++..+...
T Consensus 345 ----------------------------~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~v~W~k~g~~~~~~------- 387 (816)
T 3dmk_A 345 ----------------------------SAKIDPPTQTVDFGRPAVFTCQYTGN--PIKTVSWMKDGKAIGHS------- 387 (816)
T ss_dssp ----------------------------EEEEESSEEECCTTSCEEEEEEEEEE--CCCEEEEEETTEECSCC-------
T ss_pred ----------------------------ceeeCCCceEecCCCCEEEEEEEecc--CCCEEEEEECCEECCCC-------
Confidence 22333456688999999999999864 77899999998755322
Q ss_pred EEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCceeecccCCcchhhhHHHHH
Q psy2148 1318 LIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQ 1397 (1884)
Q Consensus 1318 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~ 1397 (1884)
...|.|.+++.+|+|.|+|.|.|..|....++.|.|...
T Consensus 388 --------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~--------------------- 426 (816)
T 3dmk_A 388 --------------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR--------------------- 426 (816)
T ss_dssp --------------------SSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCS---------------------
T ss_pred --------------------CCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccc---------------------
Confidence 126999999999999999999999998777777766321
Q ss_pred HHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceee
Q psy2148 1398 MEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPI 1477 (1884)
Q Consensus 1398 ~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~ 1477 (1884)
..||.|...+.+. .+.+|+.+.|.|.+. |.|.|.|+|+++|..+..+.++...
T Consensus 427 ------------------------~~~p~i~~~~~~~-~v~~G~~v~L~C~~~--g~p~p~v~W~~~g~~l~~~~~~~~~ 479 (816)
T 3dmk_A 427 ------------------------FDPPVIRQAFQEE-TMEPGPSVFLKCVAG--GNPTPEISWELDGKKIANNDRYQVG 479 (816)
T ss_dssp ------------------------SCCCEEEEECCCE-EECSSSCEEEEEEEE--CSSCCEEEEEETTEECCSCTTEEEE
T ss_pred ------------------------cCCCceEecCcce-EEcCCCCEEEEEEEe--cCCCCEEEEEECCEECCCCCCcccc
Confidence 2366666555443 478999999999986 9999999999999999877766532
Q ss_pred e-----eCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCcc
Q psy2148 1478 Y-----DFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQ 1552 (1884)
Q Consensus 1478 ~-----~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1552 (1884)
. .+....|.|.++..+|+|.|+|.|.|..|....++.|.|.++|
T Consensus 480 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p------------------------------- 528 (816)
T 3dmk_A 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP------------------------------- 528 (816)
T ss_dssp EEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSC-------------------------------
T ss_pred cEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCC-------------------------------
Confidence 1 1234579999999999999999999999999999999997644
Q ss_pred ccccCCCCCCCeEecCCcccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEE------eeccceeeeecceee
Q psy2148 1553 LVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKI------TATETTEMEHKGKIQ 1626 (1884)
Q Consensus 1553 ~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~------~~~~~~~~~~~~~~~ 1626 (1884)
++..+....+.+|+++.|.|.+.|.|.+.+.|+++|..+.......+ .+.......+.|.|.
T Consensus 529 ------------~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~ 596 (816)
T 3dmk_A 529 ------------YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYT 596 (816)
T ss_dssp ------------EECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEE
T ss_pred ------------eeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEE
Confidence 22334456788999999999999999999999999998754322222 222222246788899
Q ss_pred EEEEecCC---------CCCCCCeeee-cCCceeecCCCeEEEEEEEeccCCC-eEEEEeCCeecCCCCCeEEEEe-Cce
Q psy2148 1627 ERVVDASE---------KPAKPPVFTK-KIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTF-STK 1694 (1884)
Q Consensus 1627 ~~~~~~~~---------~~~~~p~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~-~~~ 1694 (1884)
|.+.+... .+..+|.+.. ......+.+|+.+.|.|.+.+.|.+ .++|+++|..+..+..+.+... ...
T Consensus 597 C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~ 676 (816)
T 3dmk_A 597 CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG 676 (816)
T ss_dssp EEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTE
T ss_pred EEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCe
Confidence 98876522 2223343332 3355678899999999999876654 9999999998876656555443 446
Q ss_pred eEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEE
Q psy2148 1695 SILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDV 1774 (1884)
Q Consensus 1695 ~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v 1774 (1884)
+.|.|.++..+|+|.|+|.|.|..|....++.|.|. .||.|...+.+..+.+|+.++|.|.+.|.|.|.|
T Consensus 677 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~----------~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i 746 (816)
T 3dmk_A 677 SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY----------VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQV 746 (816)
T ss_dssp EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE----------EEEEEEECCCCEEEETTCCEEEECEEEEESCCEE
T ss_pred eEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE----------eCCceeeecccceecCCCcEEEEEEEecCCCCeE
Confidence 789999999999999999999999999999999998 4788998889999999999999999999999999
Q ss_pred EEEeCCEecCC-------CCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEec
Q psy2148 1775 YWLKNGKKIIP-------DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1775 ~W~k~~~~l~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 1835 (1884)
+|+|++..+.. +.++.+ .++ +|.|.++..+|+|.|+|.|.|.+|++..++.+..+..
T Consensus 747 ~W~k~~~~~~~~~~~~~~~~~~~~-~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~~~ 810 (816)
T 3dmk_A 747 TWKKAVGDTPGEYKDLKKSDNIRV-EEG---TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQA 810 (816)
T ss_dssp ECCEECSSSTTCCBCCCCBTTEEE-ETT---EEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEEEC
T ss_pred EEEecCCCCCccccccccCCCEEe-cCC---EEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEeec
Confidence 99999865432 223332 223 7999999999999999999999999999988877653
No 4
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-64 Score=696.31 Aligned_cols=733 Identities=21% Similarity=0.303 Sum_probs=529.7
Q ss_pred CCceeeccccccccCCCceEEEEEEEEEcCCCceEEEEee-CCEeeccccceEEEeeCCeEEEEEcCCCCCC------CE
Q psy2148 307 YPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIED------TG 379 (1884)
Q Consensus 307 ~p~~~~~~~~~~~v~~g~~~~l~c~~~~~g~p~~~i~W~k-~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D------~G 379 (1884)
+|.|...+.+...+..|+.++|.|.+ .|.|.++|.|+| ||..+....+......++ +|.|.++..+| +|
T Consensus 38 ~P~~~~~p~~~~~~~~g~~~~l~C~a--~g~p~p~~~W~k~~g~~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~~~d~G 113 (816)
T 3dmk_A 38 GPVFLKEPTNRIDFSNSTGAEIECKA--SGNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQ 113 (816)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEE--EEESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHHHEE
T ss_pred CCcEEeCCCCeEEEECCCCeEEEeee--cCCCCCEEEEEeCCCCCccCCCceEEEeeCC--cEEEcCCChHHccccccce
Confidence 46666666665668899999999987 578999999999 898887554433333333 68899998887 89
Q ss_pred EEEEEEEcCCeee-EEEEEEEEeecCCCCCCceEeccCCccCccCCCeEEEEEEEeeCCCCC--CeEEEeeCCEEcc---
Q psy2148 380 VYTCRATNKWGQA-EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--LKVEWFHNGKPIF--- 453 (1884)
Q Consensus 380 ~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~--~~i~W~k~g~~l~--- 453 (1884)
.|+|.|.|..|.. +..+.|.+. .++.+...+.+. .+.+|++++|.|.+.+ ..+. +.+.|++++..+.
T Consensus 114 ~Y~C~a~n~~G~~~S~~~~v~~~-----~~~~~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~~~v~W~~~~~~~~~~~ 186 (816)
T 3dmk_A 114 VYACLARNQFGSIISRDVHVRAV-----VAQYYEADVNKE-HVIRGNSAVIKCLIPS-FVADFVEVVSWHTDEEENYFPG 186 (816)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEE-----CCCCCCCBCCCE-EEETTSCEEECCBCCH-HHHTTEEEEEEEETTSCEECBS
T ss_pred EEEEEEecCcceEEccceEEEEE-----EccccEEEEecc-eEecCceEEEEECCCc-cccccEEEEEEEecCceEeccc
Confidence 9999999999975 455555554 233333333333 3789999999999753 2222 6899999886543
Q ss_pred --ccCcEEEEecCCEEEEEEcccCCCCc-EEEEEEEEeCcee---cC-Cc-ceEEeeccc--CCCCC----CCccccCCC
Q psy2148 454 --HKNRVKMVSDFGFVVMDIAYVQSHDS-GEYVCRAWNNFIF---IP-PF-PIFIFHQIR--LPSPS----QDNLDVPEA 519 (1884)
Q Consensus 454 --~~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~~~---~~-~~-~~~~~~~~~--~~~~~----~~~~~v~~g 519 (1884)
...++.+..++ +|.|.+++.+|+ |.|+|.|.|.... .. .. .+.+..... .|... +....+..|
T Consensus 187 ~~~~~r~~~~~~g---~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g 263 (816)
T 3dmk_A 187 AEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGS 263 (816)
T ss_dssp SCBTTTEEECTTS---CEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTT
T ss_pred cCCCceEEEecCc---eEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCC
Confidence 34566665544 599999999998 9999999976532 11 11 122221111 11111 123567899
Q ss_pred CeEEEEEEEeeCCCCccEEEEeeCCeeecCCCceEEEeeCceEEEEEccccccccEEEEEEEEcCceeeeeeEEEEEEee
Q psy2148 520 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKVL 599 (1884)
Q Consensus 520 ~~~~L~C~~~~~~~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~c~~~ 599 (1884)
+.++|.|.+. +.|.+.+.|+|++........
T Consensus 264 ~~v~L~C~~~--g~p~p~v~W~k~~~~~~~~~~----------------------------------------------- 294 (816)
T 3dmk_A 264 STMALLCPAQ--GYPVPVFRWYKFIEGTTRKQA----------------------------------------------- 294 (816)
T ss_dssp SCEEECCCCB--CSSCCEEEEEEECTTSSCEEE-----------------------------------------------
T ss_pred CeEEEEEEee--ecCCCeEEEEeCCCCCccCcc-----------------------------------------------
Confidence 9999999986 668889999986432211100
Q ss_pred eeEEEEEEcCeecCCCCeEEEEeeecEEEEEeecccccCceEEEEEEEeCCcceeEEEEEEEeeecceeeccCCCCCccc
Q psy2148 600 TVIVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEGMEG 679 (1884)
Q Consensus 600 ~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~~~l~~~~p~~~~~ 679 (1884)
+....+... .+ ..|.|.+++.+|+|.|+|.|.|..|.......|.|...+
T Consensus 295 ------------~~~~~~~~~--~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~-------------- 344 (816)
T 3dmk_A 295 ------------VVLNDRVKQ--VS--GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL-------------- 344 (816)
T ss_dssp ------------CCCSSSEEE--ET--TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE--------------
T ss_pred ------------eecCCceEe--cc--ceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCC--------------
Confidence 000000000 00 137788888899999999999888877666666553211
Q ss_pred ccceeechhhhccccccccccccccCCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEE
Q psy2148 680 GLEKIQTLEDAAHLRRTETADIEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTF 759 (1884)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~ 759 (1884)
.+...+. ...+.+|++++|.|.+. |.|.+.++|+|||..+..+.
T Consensus 345 ----------------------------~~~~~~~-~~~v~~G~~v~l~C~~~--g~p~~~v~W~k~g~~~~~~~----- 388 (816)
T 3dmk_A 345 ----------------------------SAKIDPP-TQTVDFGRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSE----- 388 (816)
T ss_dssp ----------------------------EEEEESS-EEECCTTSCEEEEEEEE--EECCCEEEEEETTEECSCCS-----
T ss_pred ----------------------------ceeeCCC-ceEecCCCCEEEEEEEe--ccCCCEEEEEECCEECCCCC-----
Confidence 1112222 22678999999999998 47888999999999886543
Q ss_pred eeCCEEEEEEcccCcCCCeEEEEEEEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEE
Q psy2148 760 CDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRA 839 (1884)
Q Consensus 760 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a 839 (1884)
..|.|.+++.+|+|.|+|.|.|..|....++.|.|...
T Consensus 389 -----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~------------------------------------- 426 (816)
T 3dmk_A 389 -----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR------------------------------------- 426 (816)
T ss_dssp -----SEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCS-------------------------------------
T ss_pred -----CEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccc-------------------------------------
Confidence 36999999999999999999999887766665544210
Q ss_pred EccccceeEEEEEEEecccceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCee
Q psy2148 840 YNDYGEAVTSASMKVQGKRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEF 919 (1884)
Q Consensus 840 ~n~~g~~~~s~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 919 (1884)
..||.|
T Consensus 427 --------------------------------------------------------------------------~~~p~i 432 (816)
T 3dmk_A 427 --------------------------------------------------------------------------FDPPVI 432 (816)
T ss_dssp --------------------------------------------------------------------------SCCCEE
T ss_pred --------------------------------------------------------------------------cCCCce
Confidence 135677
Q ss_pred eecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEe-----eCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 920 LTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN-----DFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 920 ~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
...+.+..+.+|+.+.|.|.+. +.|.+.|+|+|+|..+..+.++.... ....+.|.|.+++.+|+|.|+|.|.
T Consensus 433 ~~~~~~~~v~~G~~v~L~C~~~--g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 510 (816)
T 3dmk_A 433 RQAFQEETMEPGPSVFLKCVAG--GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510 (816)
T ss_dssp EEECCCEEECSSSCEEEEEEEE--CSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEE
T ss_pred EecCcceEEcCCCCEEEEEEEe--cCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEE
Confidence 7777788899999999999998 78889999999999998888776532 1234579999999999999999999
Q ss_pred cCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEE
Q psy2148 995 NKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHF 1074 (1884)
Q Consensus 995 N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l 1074 (1884)
|..|..+.++.|.|..+|.+. .+. ...+.+|+.+.|
T Consensus 511 n~~g~~~~~~~l~V~~~p~~~-------------------------------------------~~~-~~~v~~G~~v~l 546 (816)
T 3dmk_A 511 SKVGVAEHSAKLNVYGLPYIR-------------------------------------------QME-KKAIVAGETLIV 546 (816)
T ss_dssp ETTEEEEEEEEEEECSSCEEC-------------------------------------------CCC-CEEEETTCCEEE
T ss_pred ECCCeEEEEEEEEEecCCeeE-------------------------------------------ccC-CeEEecCCeEEE
Confidence 999999999999997544221 111 245668999999
Q ss_pred EEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccC-cCCcEEEEEEEEcCCeee-EEEEEEEEeecccc
Q psy2148 1075 DCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVY-ARDSGEYICRATNKWGTA-MTKAKVICKAKHDI 1152 (1884)
Q Consensus 1075 ~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~G~~-~~~~~l~v~~~~~~ 1152 (1884)
.|.+. +.|.+.|.|+|+|..+..+.+.... .++ .|.|.++. .+|+|.|+|.|.|..|.. +..+.|.|..+|.+
T Consensus 547 ~C~~~--g~p~~~i~W~k~~~~l~~~~~~~~~-~~~--~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~ 621 (816)
T 3dmk_A 547 TCPVA--GYPIDSIVWERDNRALPINRKQKVF-PNG--TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI 621 (816)
T ss_dssp ECCEE--CSSEEEEEEEETTEESCCSTTEEEC-TTS--EEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCC
T ss_pred EEEec--CCCCCEEEEEECCeEcccCCceEEe-cCC--eEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCcc
Confidence 99997 7888899999999999877665543 233 69999998 689999999999999954 44566665543321
Q ss_pred ccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccccccccccc
Q psy2148 1153 VTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTES 1232 (1884)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1232 (1884)
..
T Consensus 622 ~~------------------------------------------------------------------------------ 623 (816)
T 3dmk_A 622 IP------------------------------------------------------------------------------ 623 (816)
T ss_dssp BC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred cCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEeccccccccccc
Q psy2148 1233 QLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFIN 1312 (1884)
Q Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~ 1312 (1884)
..+....+.+|+.++|.|.+.+ +.+...+.|++++..+.....
T Consensus 624 ------------------------------------~~~~~~~~~~G~~v~L~C~~~~-~~~~~~i~W~~~g~~l~~~~~ 666 (816)
T 3dmk_A 624 ------------------------------------FAFEEGPAQVGQYLTLHCSVPG-GDLPLNIDWTLDGQAISEDLG 666 (816)
T ss_dssp ------------------------------------CCCCSSCEESSCEEEEEEBCCC-SSSCCEEEEEETTBCCCGGGT
T ss_pred ------------------------------------ccccccccCCCCeEEEEEEEeC-CCCCCEEEEEECCeEcCCCCC
Confidence 0012345788999999999875 445569999999987754321
Q ss_pred ccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCceeecccCCcchhhh
Q psy2148 1313 ISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLKT 1392 (1884)
Q Consensus 1313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~ 1392 (1884)
.. ..........|.|.++..+|+|.|+|.|.|.+|....++.|.|..+|.+
T Consensus 667 ~~----------------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~------------- 717 (816)
T 3dmk_A 667 IT----------------TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRW------------- 717 (816)
T ss_dssp CE----------------EEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEE-------------
T ss_pred ee----------------EEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCce-------------
Confidence 11 0011234568999999999999999999999999988899988766553
Q ss_pred HHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCC
Q psy2148 1393 EALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKN 1472 (1884)
Q Consensus 1393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~ 1472 (1884)
...+.+ ..+.+|+.++|.|.+. |.|.|.|+|+|++..+....
T Consensus 718 -----------------------------------~~~~~~-~~v~~G~~v~l~C~~~--g~P~p~i~W~k~~~~~~~~~ 759 (816)
T 3dmk_A 718 -----------------------------------ILEPTD-KAFAQGSDAKVECKAD--GFPKPQVTWKKAVGDTPGEY 759 (816)
T ss_dssp -----------------------------------EECCCC-EEEETTCCEEEECEEE--EESCCEEECCEECSSSTTCC
T ss_pred -----------------------------------eeeccc-ceecCCCcEEEEEEEe--cCCCCeEEEEecCCCCCccc
Confidence 333333 2477899999999997 99999999999886654321
Q ss_pred C-----ceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeC
Q psy2148 1473 R-----FNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTG 1519 (1884)
Q Consensus 1473 ~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~ 1519 (1884)
. ......++ +|.|.++..+|+|.|+|.|.|.+|...+++.+..+.
T Consensus 760 ~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~~ 809 (816)
T 3dmk_A 760 KDLKKSDNIRVEEG--TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809 (816)
T ss_dssp BCCCCBTTEEEETT--EEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEEE
T ss_pred cccccCCCEEecCC--EEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEee
Confidence 1 01122333 799999999999999999999999999998876653
No 5
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=2.9e-59 Score=623.80 Aligned_cols=516 Identities=17% Similarity=0.235 Sum_probs=395.4
Q ss_pred ceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeE-EEE
Q psy2148 925 DLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEA-TTS 1003 (1884)
Q Consensus 925 ~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~ 1003 (1884)
...+.+|+.+.|.|.+. + |.+.|+|+|+|..+..+.++.+...++ .|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 120 ~~~v~~g~~v~l~C~~~--~-p~~~v~W~~~g~~l~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~ 194 (642)
T 1e07_A 120 SKPVEDKDAVAFTCEPE--T-QDATYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDS 194 (642)
T ss_pred ceeEecCCcEEEEEECC--C-CCeeEEEEECCeECCCCCceEEcCCCC--EEEEeCCCcccCeeEEEEEecCCCCcccce
Confidence 34678899999999998 5 788999999999999888887765443 79999999999999999999998864 456
Q ss_pred EEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCC
Q psy2148 1004 CKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSD 1083 (1884)
Q Consensus 1004 ~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~ 1083 (1884)
+.|.|...|.. | .... ....+.+|+.+.|.|.+. |.
T Consensus 195 ~~l~V~~~p~~---------------------------------------~--~~~~-~~~~~~~G~~~~l~C~~~--g~ 230 (642)
T 1e07_A 195 VILNVLYGPDA---------------------------------------P--TISP-LNTSYRSGENLNLSCHAA--SN 230 (642)
T ss_pred EEEEEEeCCCC---------------------------------------c--EEec-CCcccccCCEEEEEEEcC--CC
Confidence 78888743321 1 1111 235678999999999995 88
Q ss_pred CCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEE--EEEeeccccccccccCCc
Q psy2148 1084 PTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAK--VICKAKHDIVTESQLPDS 1161 (1884)
Q Consensus 1084 p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~--l~v~~~~~~~~~~~~~~~ 1161 (1884)
|.+.|.|+|+|+.+..+ ..|.|.++..+|+|.|+|.|.|..|....+.. |.|..++.
T Consensus 231 p~~~i~W~~~g~~i~~~-----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~---------- 289 (642)
T 1e07_A 231 PPAQYSWFVNGTFQQST-----------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPP---------- 289 (642)
T ss_pred CCcEEEEEECCeEcccC-----------CceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCC----------
Confidence 99999999999988432 25899999999999999999999997665443 43332110
Q ss_pred ccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccccccccccccCCCchhHH
Q psy2148 1162 MSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQLPDSMSAE 1241 (1884)
Q Consensus 1162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 (1884)
T Consensus 290 -------------------------------------------------------------------------------- 289 (642)
T 1e07_A 290 -------------------------------------------------------------------------------- 289 (642)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEee
Q psy2148 1242 KLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFN 1321 (1884)
Q Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 1321 (1884)
+|.+. ......+..|+.+.|.|.+.+. | +.+.|++++..+....
T Consensus 290 ----------------------~p~i~-~~~~~~~~~g~~v~l~C~~~~~--p-~~v~W~~~g~~l~~~~---------- 333 (642)
T 1e07_A 290 ----------------------KPFIT-SNNSNPVEDEDAVALTCEPEIQ--N-TTYLWWVNNQSLPVSP---------- 333 (642)
T ss_pred ----------------------CCEEE-cCCceeEecCCcEEEEEECCCC--C-ccEEEEECCccCCCcC----------
Confidence 11111 1122345668889999999863 4 6899999998764331
Q ss_pred ccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEcccccee-eeEEEEEeecCceeecccCCcchhhhHHHHHHHH
Q psy2148 1322 FCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAF-TKATISCKKIPTIQLQNQVPKGMLKTEALIQMEA 1400 (1884)
Q Consensus 1322 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 1400 (1884)
+. .. ......|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|..
T Consensus 334 ----~~---~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~--------------------- 383 (642)
T 1e07_A 334 ----RL---QL--SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDD--------------------- 383 (642)
T ss_pred ----CE---EE--eCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCC---------------------
Confidence 11 01 11224799999999999999999999998754 4477888755432
Q ss_pred hhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeC
Q psy2148 1401 AIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDF 1480 (1884)
Q Consensus 1401 ~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~ 1480 (1884)
| ...+. ...+.+|+.++|.|.+. |.|.|.|+|+++|..+..+
T Consensus 384 ------------------------~--~~~~~-~~~~~~g~~~~l~C~~~--g~p~~~i~W~~~g~~~~~~--------- 425 (642)
T 1e07_A 384 ------------------------P--TISPS-YTYYRPGVNLSLSCHAA--SNPPAQYSWLIDGNIQQHT--------- 425 (642)
T ss_pred ------------------------C--eecCC-ceEecCCCcEEEEEEcC--ccCCCeEEEEECCEEcCCC---------
Confidence 1 11111 22478999999999986 9999999999999887542
Q ss_pred ceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCC
Q psy2148 1481 GYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPK 1560 (1884)
Q Consensus 1481 ~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1560 (1884)
..|.|.++..+|+|.|+|.|.|..|....+..+.|.... ..
T Consensus 426 --~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~-------------------------------------~~ 466 (642)
T 1e07_A 426 --QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA-------------------------------------EL 466 (642)
T ss_pred --ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEec-------------------------------------cC
Confidence 258999999999999999999999877665444432100 00
Q ss_pred CCCeEecCCcccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCC
Q psy2148 1561 EAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPP 1640 (1884)
Q Consensus 1561 ~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1640 (1884)
.+|.+
T Consensus 467 ~~p~i--------------------------------------------------------------------------- 471 (642)
T 1e07_A 467 PKPSI--------------------------------------------------------------------------- 471 (642)
T ss_pred CCceE---------------------------------------------------------------------------
Confidence 01111
Q ss_pred eeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCce
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 1720 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~ 1720 (1884)
. ......+.+|+.+.|.|.+.+ |.+.+.|+|+|..+....++.+. ..+++|.|.++..+|+|.|+|.|.|..|.
T Consensus 472 --~-~~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 545 (642)
T 1e07_A 472 --S-SNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLS--NGNRTLTLFNVTRNDARAYVCGIQNSVSA 545 (642)
T ss_pred --e-cCCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEc--CCCcEEEEeecChhcCceEEEEeEcCCCC
Confidence 1 112235668889999999884 88999999999999877766554 34568999999999999999999999997
Q ss_pred EE-EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEE
Q psy2148 1721 AK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFT 1799 (1884)
Q Consensus 1721 ~~-~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~ 1799 (1884)
.. ..+.|.|.. .|+.+...+.+..+.+|+.++|.|.+.|.|.|.|+|+|||..+..+ ..
T Consensus 546 ~~s~~~~l~V~~---------~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~-----------~~ 605 (642)
T 1e07_A 546 NRSDPVTLDVLY---------GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT-----------QV 605 (642)
T ss_pred ccCCCEEEEEEe---------CCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccC-----------ce
Confidence 54 468999985 3555666778889999999999999999999999999999987532 27
Q ss_pred EEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1800 LLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1800 L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
|.|.++..+|+|.|+|.|.|.+|.++.++.|.|..
T Consensus 606 L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v 640 (642)
T 1e07_A 606 LFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640 (642)
T ss_pred EEECcccccCCeEEEEEEEecccCcceeEEEEEEE
Confidence 99999999999999999999999999999999875
No 6
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=2.8e-57 Score=604.54 Aligned_cols=610 Identities=17% Similarity=0.248 Sum_probs=438.2
Q ss_pred cccCCCceEEEEEEEEEcCCCceEEEEeeCCEeeccccceE-EEe----------------eCCeEEEEEcCCCCCCCEE
Q psy2148 318 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVH----------------AFGMVVLEILGTKIEDTGV 380 (1884)
Q Consensus 318 ~~v~~g~~~~l~c~~~~~g~p~~~i~W~k~g~~i~~~~~~~-~~~----------------~~~~~~L~I~~~~~~D~G~ 380 (1884)
..+.+|+.++|.|.. .+.+.+.+.|||+... ....++. ... -....+|.|.+++.+|+|.
T Consensus 9 ~~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~~-~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~~~sL~I~~v~~~D~G~ 85 (642)
T 1e07_A 9 FNVAEGKEVLLLVHN--LPQHLFGYSWYKGERV-DGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGF 85 (642)
T ss_pred CcccccccEEEEEcc--CCCCceEEEEECCccc-CCcceEEEEEccccccccCccccCceeeccCCcEEECCCCcccCcE
Confidence 358899999999985 3446789999995432 2111100 000 0012479999999999999
Q ss_pred EEEEEEcCC-eeeEEEEEEEEeecCCCCCCceEeccCCccCccCCCeEEEEEEEeeCCCCCCeEEEeeCCEEccccCcEE
Q psy2148 381 YTCRATNKW-GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK 459 (1884)
Q Consensus 381 Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~ 459 (1884)
|+|.+.+.. +.....+.|.|... ..+|.+.... ...+.+|+.++|.|.+. + |.+.++|+|+|..+....++.
T Consensus 86 Y~C~~~~~~~~~~~~~~~l~V~~~--~~~p~i~~~~--~~~v~~g~~v~l~C~~~--~-p~~~v~W~~~g~~l~~~~~~~ 158 (642)
T 1e07_A 86 YTLHVIKSDLVNEEATGQFRVYPE--LPKPSISSNN--SKPVEDKDAVAFTCEPE--T-QDATYLWWVNNQSLPVSPRLQ 158 (642)
T ss_pred EEEEEEcCCCeEEEEEEEEEeccc--CCCCcEEccC--ceeEecCCcEEEEEECC--C-CCeeEEEEECCeECCCCCceE
Confidence 999999864 44456677777532 2455555432 23478899999999997 5 789999999999998877777
Q ss_pred EEecCCEEEEEEcccCCCCcEEEEEEEEeCceecCC--cceEEeecccCCCCCCCccccCCCCeEEEEEEEeeCCCCccE
Q psy2148 460 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNNFIFIPP--FPIFIFHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSDPTMR 537 (1884)
Q Consensus 460 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~g~~~~L~C~~~~~~~p~~~ 537 (1884)
+..+++ +|.|.++..+|+|.|+|.|.|..+.... ..+.+...+..+...+....+.+|+.++|.|.+. +.|.+.
T Consensus 159 ~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~--g~p~~~ 234 (642)
T 1e07_A 159 LSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAA--SNPPAQ 234 (642)
T ss_pred EcCCCC--EEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcC--CCCCcE
Confidence 655444 7999999999999999999998876332 2233333333444455567789999999999985 778889
Q ss_pred EEEeeCCeeecCCCceEEEeeCceEEEEEccccccccEEEEEEEEcCceeeeeeEEEEEEeeeeEEEEEEcCeecCCCCe
Q psy2148 538 IDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKVLTVIVEWFYNGKKLPHGHR 617 (1884)
Q Consensus 538 i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~c~~~~~~v~W~~~g~~l~~~~~ 617 (1884)
++|+++|..+... ..|.|.++..+|+|.|+|.|.|.
T Consensus 235 i~W~~~g~~i~~~-----------~~L~i~~~~~~d~G~Y~C~a~n~--------------------------------- 270 (642)
T 1e07_A 235 YSWFVNGTFQQST-----------QELFIPNITVNNSGSYTCQAHNS--------------------------------- 270 (642)
T ss_pred EEEEECCeEcccC-----------CceEEecccccCCeEEEEEEEeC---------------------------------
Confidence 9999998876321 13555555555555555555544
Q ss_pred EEEEeeecEEEEEeecccccCceEEEEEEEeCCcceeEEEEEEEeeecceeeccCCCCCcccccceeechhhhccccccc
Q psy2148 618 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEGMEGGLEKIQTLEDAAHLRRTE 697 (1884)
Q Consensus 618 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 697 (1884)
.|....+..+.+. +..++
T Consensus 271 --------------------------------~g~~~~s~~~~v~--------v~~~~---------------------- 288 (642)
T 1e07_A 271 --------------------------------DTGLNRTTVTTIT--------VYAEP---------------------- 288 (642)
T ss_pred --------------------------------CCceEEeeeEEEE--------EEccC----------------------
Confidence 3332222211111 00000
Q ss_pred cccccccCCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCC
Q psy2148 698 TADIEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDC 777 (1884)
Q Consensus 698 ~~~~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~ 777 (1884)
.+|.+. ......+..|+.+.|.|.+. +.| +.++|+|||+.|..+.++.+..++ ..|.|.++..+|+
T Consensus 289 -------~~p~i~--~~~~~~~~~g~~v~l~C~~~--~~p-~~v~W~~~g~~l~~~~~~~~~~~~--~~L~i~~~~~~d~ 354 (642)
T 1e07_A 289 -------PKPFIT--SNNSNPVEDEDAVALTCEPE--IQN-TTYLWWVNNQSLPVSPRLQLSNDN--RTLTLLSVTRNDV 354 (642)
T ss_pred -------CCCEEE--cCCceeEecCCcEEEEEECC--CCC-ccEEEEECCccCCCcCCEEEeCCC--CEEEEeccCcccC
Confidence 112222 12222456788899999987 455 699999999999888877765443 4799999999999
Q ss_pred eEEEEEEEecCceE-EEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEec
Q psy2148 778 GQYSCRAYNDYGEA-VTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQG 856 (1884)
Q Consensus 778 G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~ 856 (1884)
|.|+|.|.|..|.. +..+.|.|...|..
T Consensus 355 G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~--------------------------------------------------- 383 (642)
T 1e07_A 355 GPYECGIQNELSVDHSDPVILNVLYGPDD--------------------------------------------------- 383 (642)
T ss_pred eeEEEEEeCCCCCcceeeEEEEEEcCCCC---------------------------------------------------
Confidence 99999999998864 34456655432211
Q ss_pred ccceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEE
Q psy2148 857 KRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHF 936 (1884)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l 936 (1884)
+...+.+..+.+|+.+.|
T Consensus 384 --------------------------------------------------------------~~~~~~~~~~~~g~~~~l 401 (642)
T 1e07_A 384 --------------------------------------------------------------PTISPSYTYYRPGVNLSL 401 (642)
T ss_pred --------------------------------------------------------------CeecCCceEecCCCcEEE
Confidence 112234567789999999
Q ss_pred EEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeeccccc
Q psy2148 937 ECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDV 1016 (1884)
Q Consensus 937 ~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~ 1016 (1884)
.|.+. +.|.+.|+|+|+|..+..+. .|.|.+++.+|+|.|+|.|.|..|....+..+.|.....
T Consensus 402 ~C~~~--g~p~~~i~W~~~g~~~~~~~-----------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~--- 465 (642)
T 1e07_A 402 SCHAA--SNPPAQYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE--- 465 (642)
T ss_pred EEEcC--ccCCCeEEEEECCEEcCCCc-----------eEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEecc---
Confidence 99998 77889999999999886432 599999999999999999999999876665444432110
Q ss_pred ccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEe
Q psy2148 1017 EPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRP 1096 (1884)
Q Consensus 1017 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~ 1096 (1884)
+.+|.+.. .....+.+|+.+.|.|.+. + |.+.+.|+|+|..
T Consensus 466 ----------------------------------~~~p~i~~--~~~~~v~~g~~v~l~C~~~--~-~~~~i~W~~~g~~ 506 (642)
T 1e07_A 466 ----------------------------------LPKPSISS--NNSKPVEDKDAVAFTCEPE--A-QNTTYLWWVNGQS 506 (642)
T ss_pred ----------------------------------CCCceEec--CCceeecCCCeEEEEEECC--C-CCcEEEEEECCEe
Confidence 01233322 2235678999999999996 3 7889999999999
Q ss_pred ccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEE-EEEEEEeeccccccccccCCcccHHHHHhhhccCC
Q psy2148 1097 FATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMT-KAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYT 1175 (1884)
Q Consensus 1097 l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1175 (1884)
+..+.++.+..++ ..|.|.++..+|+|.|+|.|.|..|...+ .+.|.|..+|.
T Consensus 507 l~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~------------------------ 560 (642)
T 1e07_A 507 LPVSPRLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD------------------------ 560 (642)
T ss_pred CCCCCcEEEcCCC--cEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCC------------------------
Confidence 9988777665443 48999999999999999999999997654 57787764322
Q ss_pred CCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccc
Q psy2148 1176 PEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEI 1255 (1884)
Q Consensus 1176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 (1884)
T Consensus 561 -------------------------------------------------------------------------------- 560 (642)
T 1e07_A 561 -------------------------------------------------------------------------------- 560 (642)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeee
Q psy2148 1256 EEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFD 1335 (1884)
Q Consensus 1256 ~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1335 (1884)
.+...+.+..+.+|+.++|.|.+.+ .|.+.+.|+|+|..+...
T Consensus 561 ----------~~~~~~~~~~v~~g~~~~l~C~~~g--~p~p~v~W~~~g~~i~~~------------------------- 603 (642)
T 1e07_A 561 ----------TPIISPPDSSYLSGANLNLSCHSAS--NPSPQYSWRINGIPQQHT------------------------- 603 (642)
T ss_pred ----------cceecCCceeEEcCCcEEEEEEecc--CCCCeEEEEECCEECccC-------------------------
Confidence 1222335568899999999999985 577899999998754321
Q ss_pred eceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEee
Q psy2148 1336 LGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKK 1375 (1884)
Q Consensus 1336 ~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 1375 (1884)
..|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 604 ---~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v 640 (642)
T 1e07_A 604 ---QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640 (642)
T ss_pred ---ceEEECcccccCCeEEEEEEEecccCcceeEEEEEEE
Confidence 2699999999999999999999999999888888753
No 7
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=3.8e-54 Score=590.13 Aligned_cols=644 Identities=15% Similarity=0.217 Sum_probs=123.7
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEe--e-CCeEEEEEccCCCCCCeEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN--D-FGFVILEINDVYLRDSGLYTC 991 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~--~-~~~~~L~I~~~~~~D~G~Y~C 991 (1884)
.+|.+...+....+.+|++++|.|.+. + .+.|++.+.......++.+.. + ....+|.|.+++.+|+|.|+|
T Consensus 30 ~~p~l~~~~~~~~v~~G~~vtL~C~~~--~----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~C 103 (772)
T 3v2a_R 30 DLPRLSIQKDILTIKANTTLQITCRGQ--R----DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKC 103 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEECCCCCeEEEcCCCCEEEEEecc--C----CeeeeCCCCCCccCCceeEEEcCCCcEEEEEEECCCcHhhCEeEEE
Confidence 466666666778999999999999875 2 588999876655444544432 1 224589999999999999999
Q ss_pred EEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCC--
Q psy2148 992 KATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEA-- 1069 (1884)
Q Consensus 992 ~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g-- 1069 (1884)
.+.+ +..+.++.|.|.++..+.. |.+. .....+.+.+|
T Consensus 104 ~~~~--~~~~~~~~v~v~~~~~~~~-------------------------------------~~~~-~~~~~~~v~~G~~ 143 (772)
T 3v2a_R 104 FYRE--TDLASVIYVYVQDYRSPFI-------------------------------------ASVS-DQHGVVYITENKN 143 (772)
T ss_dssp --------------------------------------------------------------------CEEEEEEESSCC
T ss_pred EEcC--CCEEEEEEEEECCCCCCce-------------------------------------EcCc-ccceeEEEecCCC
Confidence 9973 3344555666653221100 0000 00112556789
Q ss_pred CcEEEEEEEeeCCCCCcEEEEEEC--CEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1070 GKVHFDCRLEPKSDPTMRIDWFFN--GRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1070 ~~~~l~C~v~~~~~p~~~v~W~k~--~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
+.++|.|.+. + |.+.|.|+|+ |..+..+........ ...|.|.+++.+|+|.|+|.|.+..+...+...+.+.
T Consensus 144 ~~v~L~C~~~--~-p~~~v~w~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v 218 (772)
T 3v2a_R 144 KTVVIPCLGS--I-SNLNVSLCARYPEKRFVPDGNRISWDS--KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218 (772)
T ss_dssp CEEEECCCCS--C-SSCCEEEEEETTTEEECCCSSSCEEET--TTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEE
T ss_pred CeEEEEccCC--C-CCcEEEEEecCCCccccCCCceeecCC--CCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEE
Confidence 8899999996 3 7789999997 665544332222222 2369999999999999999999876544333222221
Q ss_pred eccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhcccccccccccc
Q psy2148 1148 AKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHD 1227 (1884)
Q Consensus 1148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 1227 (1884)
..+
T Consensus 219 ~~~----------------------------------------------------------------------------- 221 (772)
T 3v2a_R 219 VGY----------------------------------------------------------------------------- 221 (772)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ecC-----------------------------------------------------------------------------
Confidence 100
Q ss_pred ccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeec-ceeeeecCCcEEEEEEEeecCCCcceEEEeccccc
Q psy2148 1228 IVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEI-ESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAF 1306 (1884)
Q Consensus 1228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~ 1306 (1884)
.+|.+...+ ....+.+|++++|.|.+.+...+.+.+.|++++..
T Consensus 222 -----------------------------------~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~ 266 (772)
T 3v2a_R 222 -----------------------------------RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK 266 (772)
T ss_dssp -----------------------------------CEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC---
T ss_pred -----------------------------------ccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCcc
Confidence 011222222 34689999999999999976567789999999886
Q ss_pred ccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCceeecccCC
Q psy2148 1307 FFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVP 1386 (1884)
Q Consensus 1307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~ 1386 (1884)
+........ ................|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+....
T Consensus 267 ~~~~~~~~~---------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~--- 334 (772)
T 3v2a_R 267 HQHKKLVNR---------DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS--- 334 (772)
T ss_dssp -----CEEE---------EC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC--------
T ss_pred CCCceeeec---------cccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEecc---
Confidence 544311100 00000000123345689999999999999999999999988888899998776542110
Q ss_pred cchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCe
Q psy2148 1387 KGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGK 1466 (1884)
Q Consensus 1387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~ 1466 (1884)
.......+.+|+.++|.|.+. |.|.+.|.|+++|.
T Consensus 335 -------------------------------------------~~~~~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~g~ 369 (772)
T 3v2a_R 335 -------------------------------------------GMESLVEATVGERVRIPAKYL--GYPPPEIKWYKNGI 369 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------CCCCcEEEcCCCcEEEEEEEe--eeCCCeEEEEECCE
Confidence 011123478999999999986 99999999999999
Q ss_pred ecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEE--EEEEEEeCCCccccccCCCccchhHHHHHHhhc
Q psy2148 1467 PLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDET--RAILKTTGKPGIIYESQLPKGMKSIEKIREMEA 1544 (1884)
Q Consensus 1467 ~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~--~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~ 1544 (1884)
.+....++. +...|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|
T Consensus 370 ~l~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P----------------------- 421 (772)
T 3v2a_R 370 PLESNHTIK-----AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPP----------------------- 421 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCCCCceEc-----cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCC-----------------------
Confidence 887532221 3458999999999999999999999887644 3455554433
Q ss_pred ccccCCccccccCCCCCCCeEecC---CcccccccCCceEEEEEEecCCCCe-EEEEEcCEE------------------
Q psy2148 1545 SWQHTPEQLVEDEKPKEAPVFVSQ---PEAQKVQEGEPARFCTRVTGYPRPR-VMWLINGHT------------------ 1602 (1884)
Q Consensus 1545 ~~~~~~~~~~~~~~~~~~P~~~~~---~~~~~v~~g~~~~l~C~~~g~p~~~-v~W~~~g~~------------------ 1602 (1884)
.+... .....+.+|+.++|.|.+.|.|.|. +.|++++..
T Consensus 422 -------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 482 (772)
T 3v2a_R 422 -------------------QIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPC 482 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------cccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCcc
Confidence 22211 1112378999999999999999997 999997432
Q ss_pred --------------eeeeeEE-EE--------eeccceeeeecceeeEEEEec--------CCCCCCCCeeeecCCceee
Q psy2148 1603 --------------IVNEIVR-KI--------TATETTEMEHKGKIQERVVDA--------SEKPAKPPVFTKKIQPCRA 1651 (1884)
Q Consensus 1603 --------------i~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~p~~~~~~~~~~v 1651 (1884)
+...... .+ .........+.|.|.|.+.+. .+.+..+|.+...+. ..+
T Consensus 483 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~ 561 (772)
T 3v2a_R 483 EEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD-MQP 561 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCCCcEEEeccceeeccCcceEEEEEEEeecccCeEEEEEEEccccccceeEEEEEECCceeeccCC-ccc
Confidence 1100000 00 000011125678899887654 233445666655444 457
Q ss_pred cCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEE--------------------EeCceeEEEEcccccCCCeEEE
Q psy2148 1652 FEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH--------------------TFSTKSILIMRQVFMEDSGVFA 1711 (1884)
Q Consensus 1652 ~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~--------------------~~~~~~~L~i~~v~~~DsG~Y~ 1711 (1884)
.+|+.+.|.|.+.|.|.+.+.|+|+|..+......... .......|.|.++..+|+|.|+
T Consensus 562 ~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 641 (772)
T 3v2a_R 562 TEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYV 641 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEE
Confidence 89999999999999999999999998765433221111 1112345999999999999999
Q ss_pred EEEEeCCceEE--EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCe
Q psy2148 1712 VIAENRGGKAK--CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRY 1789 (1884)
Q Consensus 1712 C~a~n~~g~~~--~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~ 1789 (1884)
|.|.|..|... ....|.|... .+|.|...+.+..+.+|+.++|.|.+.|.|.|.|+|+|+|..+..+.++
T Consensus 642 C~a~n~~~~~~~s~~~~l~v~~~--------~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~ 713 (772)
T 3v2a_R 642 CLAQDRKTKKRHCVVRQLTVLER--------VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 713 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeCCCCeEEEEEEeeccccc--------CCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCe
Confidence 99999655433 3455666421 5888988888889999999999999999999999999999999887776
Q ss_pred EEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecC
Q psy2148 1790 KTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1790 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
.+... ...|.|.++..+|+|.|+|.|.|.+|.++.++.|.|.++|
T Consensus 714 ~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p 758 (772)
T 3v2a_R 714 VLKDG--NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 758 (772)
T ss_dssp -----------------------------------------------
T ss_pred EEcCC--CcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCC
Confidence 65443 3489999999999999999999999999999999999854
No 8
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=1.7e-52 Score=573.93 Aligned_cols=663 Identities=18% Similarity=0.226 Sum_probs=114.0
Q ss_pred cCCceEEeccceeecCCceEEEEEEeccCcccccccceeeeeecccCCCCcEEEEeeCCEEecCCCeeeEEE--e-ccEE
Q psy2148 107 DSPVFISHLNDVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS--D-FGFV 183 (1884)
Q Consensus 107 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~W~k~g~~l~~~~~~~~~~--~-~~~~ 183 (1884)
.+|.+...+....+.+|++|+|.|...+ .+.|++.+.......++.+.. + ....
T Consensus 30 ~~p~l~~~~~~~~v~~G~~vtL~C~~~~-----------------------~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (772)
T 3v2a_R 30 DLPRLSIQKDILTIKANTTLQITCRGQR-----------------------DLDWLWPNNQSGSEQRVEVTECSDGLFCK 86 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEECCCCCeEEEcCCCCEEEEEeccC-----------------------CeeeeCCCCCCccCCceeEEEcCCCcEEE
Confidence 3455555666788999999999998742 578998776554444444432 2 2346
Q ss_pred EEEEceeeccCceEEEEEEeecCcCCCCCceeee-------------------eccc--ceeeeeeeeeecCCCCeeEEE
Q psy2148 184 VMDIAYVQSHDSGEYVCQWFVNNKPLPAGAKFKT-------------------THDF--GYVALDIELMLKTLVPFTEWF 242 (1884)
Q Consensus 184 ~L~I~~~~~~d~G~Y~C~a~~~~~~~~~~~~~~~-------------------~~~~--~~~~~~~~~~~~~p~p~i~W~ 242 (1884)
.|.|.+++.+|+|.|+|.+. +. .....+.+.+ +.++ ..+.+.|... .|.+.++|+
T Consensus 87 ~l~I~~~~~~d~G~Y~C~~~-~~-~~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~--~p~~~v~w~ 162 (772)
T 3v2a_R 87 TLTIPKVIGNDTGAYKCFYR-ET-DLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGS--ISNLNVSLC 162 (772)
T ss_dssp -----------------------------------------------CEEEEEEESSCCCEEEECCCCS--CSSCCEEEE
T ss_pred EEEECCCcHhhCEeEEEEEc-CC-CEEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCC--CCCcEEEEE
Confidence 89999999999999999983 21 1111111111 1112 3344444432 366899999
Q ss_pred EC--CeecCC-CCcEEEeccCcEEEEEEccCCcCCCeEEEEEEEcCCeeEEEEEEEEEEeeeccccCCCceeeccccccc
Q psy2148 243 VN--NKPLPA-GAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSN 319 (1884)
Q Consensus 243 k~--g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~l~v~~~~p~~~~~~~~~~~ 319 (1884)
|+ +..+.. +..+..... ..|.|.+++.+|+|.|+|.+.+..........+.+. ....++.+.+.+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v----~~~~~~~v~~~~~~~~~ 235 (772)
T 3v2a_R 163 ARYPEKRFVPDGNRISWDSK---KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV----VGYRIYDVVLSPSHGIE 235 (772)
T ss_dssp EETTTEEECCCSSSCEEETT---TEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEE----ECCCEEEEEEECCSCEE
T ss_pred ecCCCccccCCCceeecCCC---CCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEE----ecCccceeeeCCCCceE
Confidence 97 665544 333333322 369999999999999999999875543332222111 11223344444444456
Q ss_pred cCCCceEEEEEEEEEcCCCceEEEEeeCCEeeccccceEE--------EeeCCeEEEEEcCCCCCCCEEEEEEEEcCCee
Q psy2148 320 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--------VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 391 (1884)
Q Consensus 320 v~~g~~~~l~c~~~~~g~p~~~i~W~k~g~~i~~~~~~~~--------~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 391 (1884)
+.+|+.++|.|.+.....+.+.+.|++++..+........ ........|.|.+++.+|+|.|+|.|.|..+.
T Consensus 236 v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~ 315 (772)
T 3v2a_R 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 315 (772)
T ss_dssp EETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCE
T ss_pred EecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcc
Confidence 8899999999998554466789999999987655333221 11123467999999999999999999999998
Q ss_pred eEEEEEEEEeecCCCCCCceEecc--CCccCccCCCeEEEEEEEeeCCCCCCeEEEeeCCEEccccCcEEEEecCCEEEE
Q psy2148 392 AEISVNLECVDKSKGQPPKFTSHI--KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM 469 (1884)
Q Consensus 392 ~~~~~~l~V~~~~~~~~p~~~~~~--~~~~~v~~G~~v~L~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L 469 (1884)
.+..+.|.|. .+|.+.... .....+.+|+.++|.|.+. +.|.+.+.|+|+|..+.....+. +...|
T Consensus 316 ~~~~~~l~V~-----~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~g~~l~~~~~~~-----~~~~L 383 (772)
T 3v2a_R 316 KKNSTFVRVH-----EKPFVAFGSGMESLVEATVGERVRIPAKYL--GYPPPEIKWYKNGIPLESNHTIK-----AGHVL 383 (772)
T ss_dssp EEEEEEEEEE-----CCCC-------------------------------------------------------------
T ss_pred eeEEEEEEEe-----CCCeeEeccCCCCcEEEcCCCcEEEEEEEe--eeCCCeEEEEECCEeCCCCceEc-----cceeE
Confidence 8888888887 455544322 2233478999999999998 77888999999999887533221 23479
Q ss_pred EEcccCCCCcEEEEEEEEeCceecCC---cceEEeecccCCCC--CCCccccCCCCeEEEEEEEeeCCCCccE-EEEeeC
Q psy2148 470 DIAYVQSHDSGEYVCRAWNNFIFIPP---FPIFIFHQIRLPSP--SQDNLDVPEAGKVHFDCRLEPKSDPTMR-IDWFFN 543 (1884)
Q Consensus 470 ~i~~v~~~d~G~Y~C~a~n~~~~~~~---~~~~~~~~~~~~~~--~~~~~~v~~g~~~~L~C~~~~~~~p~~~-i~W~~~ 543 (1884)
.|.++..+|+|.|+|.|.|..|.... ..+.+...+..... ......+.+|+.++|.|.+. +.|.+. ++|+++
T Consensus 384 ~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~--g~p~p~~v~W~~~ 461 (772)
T 3v2a_R 384 TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVY--AIPPPHHIHWYWQ 461 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEec--cCCCCcEEEEEEc
Confidence 99999999999999999999876332 12222222221111 11122478999999999996 557775 999997
Q ss_pred CeeecCCCceEEEeeCceEEEEEccccccccEEEEEEEEcCceeeeeeEEEEEEeeeeEEEEEEcCeecCCC-CeEEEEe
Q psy2148 544 GRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKVLTVIVEWFYNGKKLPHG-HRYRTFH 622 (1884)
Q Consensus 544 ~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~c~~~~~~v~W~~~g~~l~~~-~~~~~~~ 622 (1884)
+.......... .....+.|.|...... ....+|..+... .+.....
T Consensus 462 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~------------------~~~~~g~~i~~~~~~~~~~~ 508 (772)
T 3v2a_R 462 LEEECANEPSQ---------------AVSVTNPYPCEEWRSV------------------EDFQGGNKIEVNKNQFALIE 508 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccccccccc---------------cccccCcCcccccccc------------------ccccCCCcEEEeccceeecc
Confidence 65322110000 0011122222211100 000111111111 0111111
Q ss_pred --eecEEEEEeecccccCceEEEEEEEeCCcceeEEEEEEEeeecceeeccCCCCCcccccceeechhhhcccccccccc
Q psy2148 623 --DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEGMEGGLEKIQTLEDAAHLRRTETAD 700 (1884)
Q Consensus 623 --~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1884)
......|.|.++ +|+|.|+|.|.|..|.......+.|..
T Consensus 509 ~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~------------------------------------- 549 (772)
T 3v2a_R 509 GKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTR------------------------------------- 549 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEEC-------------------------------------
Confidence 112235777665 789999999999999877666655532
Q ss_pred ccccCCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEE--------------------Ee
Q psy2148 701 IEHRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRT--------------------FC 760 (1884)
Q Consensus 701 ~~~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~--------------------~~ 760 (1884)
+|.+...+. ..+.+|+++.|.|.+. +.|.+.++|+|+|..+........ ..
T Consensus 550 -----~p~i~~~p~--~~~~~G~~v~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (772)
T 3v2a_R 550 -----GPEITLQPD--MQPTEQESVSLWCTAD--RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNS 620 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----CceeeccCC--cccccCCceEEEEecc--CCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecC
Confidence 222222222 2467999999999998 578889999999877644332111 11
Q ss_pred eCCEEEEEEcccCcCCCeEEEEEEEecCceEEEE--EEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEE
Q psy2148 761 DFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTS--ASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCR 838 (1884)
Q Consensus 761 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~--~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~ 838 (1884)
......|.|.+++.+|+|.|+|.|.|..|....+ ..|.|.
T Consensus 621 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~-------------------------------------- 662 (772)
T 3v2a_R 621 TNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL-------------------------------------- 662 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeeccc--------------------------------------
Confidence 1123458888888888888888888855443221 222110
Q ss_pred EEccccceeEEEEEEEecccceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCe
Q psy2148 839 AYNDYGEAVTSASMKVQGKRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPE 918 (1884)
Q Consensus 839 a~n~~g~~~~s~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 918 (1884)
...+|.
T Consensus 663 --------------------------------------------------------------------------~~~~P~ 668 (772)
T 3v2a_R 663 --------------------------------------------------------------------------ERVAPT 668 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------ccCCCE
Confidence 114677
Q ss_pred eeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCe
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHG 998 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 998 (1884)
|...+.+..+.+|+.++|.|.+. |.|.|.|+|+|+|..|..+.++.+... ..+|.|.++..+|+|.|+|.|.|.+|
T Consensus 669 ~~~~~~~~~v~~g~~~~l~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G 744 (772)
T 3v2a_R 669 ITGNLENQTTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDG--NRNLTIRRVRKEDEGLYTCQACSVLG 744 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecCCCceEEeCCCCEEEEEEeC--ccCCCeEEEEECCeECcCCCCeEEcCC--CcEEEECcCCHHHCEEEEEEEEeCCc
Confidence 77777888999999999999998 778899999999999988777665433 34799999999999999999999999
Q ss_pred eEEEEEEEEEEeeccc
Q psy2148 999 EATTSCKLTVKGRQGI 1014 (1884)
Q Consensus 999 ~~~~~~~l~V~~~~~~ 1014 (1884)
..+.++.|+|.++|..
T Consensus 745 ~~~~~~~l~V~~~p~~ 760 (772)
T 3v2a_R 745 CAKVEAFFIIEGAQEK 760 (772)
T ss_dssp ----------------
T ss_pred ceeEEEEEEEECCCCc
Confidence 9999999999987763
No 9
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=2.9e-42 Score=454.69 Aligned_cols=475 Identities=16% Similarity=0.202 Sum_probs=335.5
Q ss_pred cCcCCCCcEEEEEEEeeCCCCC---cEEEEEECCEecc--------------CCCceEEEe--eCcEEEEEEcccCcCCc
Q psy2148 1064 LDVPEAGKVHFDCRLEPKSDPT---MRIDWFFNGRPFA--------------TGSRVKTVY--DFGFISLDMDYVYARDS 1124 (1884)
Q Consensus 1064 ~~v~~g~~~~l~C~v~~~~~p~---~~v~W~k~~~~l~--------------~~~~~~~~~--~~~~~~l~i~~~~~~d~ 1124 (1884)
+.+.+|+.++|.|.+. +.|. +.|.|+|++..+. ...|+.+.. +++...|.|.+++.+|+
T Consensus 10 v~v~~G~~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~ 87 (585)
T 2ocw_A 10 VNSVEGNSVSITCYYP--PTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDS 87 (585)
T ss_pred eEEecCCcEEEEEeCC--CCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccC
Confidence 6788999999999997 4443 3799999986431 123444433 45667899999999999
Q ss_pred EEEEEEEEcCCeeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccc
Q psy2148 1125 GEYICRATNKWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAW 1204 (1884)
Q Consensus 1125 G~Y~C~a~n~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1204 (1884)
|.|+|.|.|..|..+..+.|.|..+|.
T Consensus 88 G~Y~C~~~n~~~~~~~~~~l~V~~~p~----------------------------------------------------- 114 (585)
T 2ocw_A 88 GRYKCGLGINSRGLSFDVSLEVSQGPG----------------------------------------------------- 114 (585)
T ss_pred EEEEEEcccCCCCceEEEEEEEecCcc-----------------------------------------------------
Confidence 999999999999888888888764332
Q ss_pred cccchhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEE
Q psy2148 1205 YDSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRF 1284 (1884)
Q Consensus 1205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l 1284 (1884)
|...+....+.+|+.++|
T Consensus 115 --------------------------------------------------------------~~~~~~~~~v~~G~~v~l 132 (585)
T 2ocw_A 115 --------------------------------------------------------------LLNDTKVYTVDLGRTVTI 132 (585)
T ss_pred --------------------------------------------------------------ccCCCccEEEEcCCCEEE
Confidence 222335668899999999
Q ss_pred EEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccc
Q psy2148 1285 ETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGE 1364 (1884)
Q Consensus 1285 ~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 1364 (1884)
.|.+.+ ..|.+.+.|+|++.............. ......+..........+.+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 133 ~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 210 (585)
T 2ocw_A 133 NCPFKT-ENAQKRKSLYKQIGLYPVLVIDSSGYV-NPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNS 210 (585)
T ss_pred EEEecC-CCCCccEEEEECCCCCceEEecCCccc-CccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcc
Confidence 999986 345678999999764321100000000 000011111111112234568999999999999999999999998
Q ss_pred eeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceE
Q psy2148 1365 AFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTK 1444 (1884)
Q Consensus 1365 ~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~ 1444 (1884)
....+.|.|..++ |.++ .+.+|+.+.
T Consensus 211 ~~~~~~l~V~~~~-----------------------------------------------p~~~-------~~~~G~~v~ 236 (585)
T 2ocw_A 211 NKKNADLQVLKPE-----------------------------------------------PELV-------YEDLRGSVT 236 (585)
T ss_pred ccceEEEEEccCC-----------------------------------------------Ccee-------EEcCCCcEE
Confidence 8888888886432 2221 367899999
Q ss_pred EEEEEeeCCCCC---CeEEEe-ecCee---c-C--------CCCCceeee--eCceEEEEEeeeccCCCeEEEEEEEecC
Q psy2148 1445 FECQLAPVGDPN---MKVEWF-LNGKP---L-P--------HKNRFNPIY--DFGYVAMNFGWVYPEDSGEYLCRATNLY 1506 (1884)
Q Consensus 1445 l~C~~~~~g~p~---~~i~W~-~~~~~---l-~--------~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~c~a~n~~ 1506 (1884)
|.|.+ +.|. +.+.|+ ++|.. + . ...++.+.. .++...|.|.+++.+|+|.|+|.|.|.
T Consensus 237 l~C~~---~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~- 312 (585)
T 2ocw_A 237 FHCAL---GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD- 312 (585)
T ss_pred EEEEc---CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-
Confidence 99997 4444 788896 88842 1 1 123333222 245568999999999999999999995
Q ss_pred cceE-----EEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceE
Q psy2148 1507 GMDE-----TRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPAR 1581 (1884)
Q Consensus 1507 G~~~-----~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~ 1581 (1884)
|... ..+.|.|.++ |.|...+.+..+.+|+.+.
T Consensus 313 g~~~~~~~~~~~~l~V~~~------------------------------------------p~~~~~~~~~~~~~G~~v~ 350 (585)
T 2ocw_A 313 GQLQEGSPIQAWQLFVNEE------------------------------------------STIPRSPTVVKGVAGSSVA 350 (585)
T ss_pred CCccccCceeeEEEEEecc------------------------------------------cccccCCcceEEEeCCcEE
Confidence 5444 6677887653 4455556677788999999
Q ss_pred EEEEEecCCCCeE----EEEE--cCE--EeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecC
Q psy2148 1582 FCTRVTGYPRPRV----MWLI--NGH--TIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFE 1653 (1884)
Q Consensus 1582 l~C~~~g~p~~~v----~W~~--~g~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~ 1653 (1884)
|.|.+.|.|.|.+ +|++ ||. .+....
T Consensus 351 l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~---------------------------------------------- 384 (585)
T 2ocw_A 351 VLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSE---------------------------------------------- 384 (585)
T ss_pred EEEecCCCCCccEEEEEEEEccCCCCCceeeeec----------------------------------------------
Confidence 9999999998877 7888 776 432100
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEe--CceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy2148 1654 QDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 1731 (1884)
Q Consensus 1654 G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~ 1731 (1884)
+ .+ ......++.+... ....+|.|.++..+|+|.|+|.| |..|.....+.|.|..
T Consensus 385 -----------~----~~-------~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~ 441 (585)
T 2ocw_A 385 -----------G----WV-------KAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIE 441 (585)
T ss_pred -----------c----ee-------ecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEec
Confidence 0 00 0011112222221 12235999999999999999999 9999999999999985
Q ss_pred cccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEe----cCCCcEEEEEeCCEecCCCCC------eE-EeecCCeEEE
Q psy2148 1732 KRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS----ATKPLDVYWLKNGKKIIPDIR------YK-TLEEDNLFTL 1800 (1884)
Q Consensus 1732 ~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~----g~p~p~v~W~k~~~~l~~~~~------~~-~~~~~~~~~L 1800 (1884)
.+|.+.. +....+.+|+.++|.|.+. |.|.|.|+|+|+|..+..... +. +...+....|
T Consensus 442 ---------~~p~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L 511 (585)
T 2ocw_A 442 ---------GEPNLKV-PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSL 511 (585)
T ss_pred ---------Ccccccc-CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEE
Confidence 2455543 6788899999999999997 778899999999988754321 22 2223445799
Q ss_pred EEccCCCCCCEEEEEEEEeCCeeEEEE-EEEEEEecC
Q psy2148 1801 LIIEAVVEDSGAYECVAMNNAGEARCE-AELVVQSKK 1836 (1884)
Q Consensus 1801 ~i~~~~~~d~G~Y~C~a~N~~G~~~~~-~~l~V~~~~ 1836 (1884)
.|.++..+|+|.|+|.|.|..|..... +.|.|.+++
T Consensus 512 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 512 TLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred EECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 999999999999999999999976644 999999865
No 10
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=2.2e-44 Score=467.12 Aligned_cols=452 Identities=14% Similarity=0.151 Sum_probs=312.7
Q ss_pred CCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEE
Q psy2148 1052 NPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRA 1131 (1884)
Q Consensus 1052 ~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 1131 (1884)
.||.+.... ..+.+.+|+.++|.|.+. + .|.|+|+|..+. .+.....|.|.+++.+|+|.|+|.|
T Consensus 35 ~pP~i~~~~-~~~~v~~G~~v~l~C~~~--~----~v~W~~~~~~~~--------~~~~~~~L~I~~~~~~D~G~Y~C~a 99 (524)
T 2ec8_A 35 SPPSIHPGK-SDLIVRVGDEIRLLCTDP--G----FVKWTFEILDET--------NENKQNEWITEKAEATNTGKYTCTN 99 (524)
T ss_dssp CCCEEESCC-SEEECCTTSCEEEEEECT--T----EEEEEEESSSCC--------EEECSSEEEESSCCSTTCEEEEEEE
T ss_pred CCCccCCCC-ceEEEeCCCeEEEEEeCC--c----eEEEcCCCcccc--------ccCccceEEEcccchhhCEEEEEee
Confidence 344444322 236788999999999986 4 799999998772 1223358999999999999999999
Q ss_pred EcCCeeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhh
Q psy2148 1132 TNKWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSE 1211 (1884)
Q Consensus 1132 ~n~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 1211 (1884)
.| |. +..+.|.|..++.+
T Consensus 100 ~n--g~-~~~~~l~V~~p~~~----------------------------------------------------------- 117 (524)
T 2ec8_A 100 KH--GL-SNSIYVFVRDPAKL----------------------------------------------------------- 117 (524)
T ss_dssp TT--SC-EEEEEEECCCSSCS-----------------------------------------------------------
T ss_pred cC--Cc-ceEEEEEECCCCcc-----------------------------------------------------------
Confidence 99 53 66666666532211
Q ss_pred hhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeec
Q psy2148 1212 YQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPR 1291 (1884)
Q Consensus 1212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~ 1291 (1884)
...+.+..+.+|+.++|.|.+.+
T Consensus 118 --------------------------------------------------------~~~~~~~~v~~G~~v~l~C~~~~- 140 (524)
T 2ec8_A 118 --------------------------------------------------------FLVDRSLYGKEDNDTLVRCPLTD- 140 (524)
T ss_dssp --------------------------------------------------------BCCCCCCCEETTSCEEECCCBSC-
T ss_pred --------------------------------------------------------cccccceEEEcCCeEEEECcCCC-
Confidence 12234567889999999999875
Q ss_pred CCCcceEEEec-ccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCce-EEEEEEEccccceee-e
Q psy2148 1292 VDPRLRVECSL-STAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQG-EYVCRAYNDHGEAFT-K 1368 (1884)
Q Consensus 1292 ~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G-~Y~C~a~n~~g~~~~-~ 1368 (1884)
.+.+.+.|++ ++..+.... +.. ......|.|.+++.+|+| .|+|.|.|..|...+ .
T Consensus 141 -~~~~~v~W~~~~g~~l~~~~--------------~~~------~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~ 199 (524)
T 2ec8_A 141 -PEVTNYSLKGCQGKPLPKDL--------------RFI------PDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEK 199 (524)
T ss_dssp -CCCSCEEEECSSSCCCCSSC--------------EEE------EETTTEEEEESCCGGGTTCEEEEEEC----CCCCCC
T ss_pred -CccceEEEEccCCcCcCCCC--------------cee------ECCCccEEEeccchhhCCceEEEEEEECCceEEEEE
Confidence 4568999988 666553321 100 011226999999999999 999999998776544 5
Q ss_pred EEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEE
Q psy2148 1369 ATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQ 1448 (1884)
Q Consensus 1369 ~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~ 1448 (1884)
+.|.|...+ ..||.|...+.+. .+.+|+.+.|.|.
T Consensus 200 ~~l~V~~~~--------------------------------------------~~~p~i~~~~~~~-~v~~G~~v~L~C~ 234 (524)
T 2ec8_A 200 FILKVRPAF--------------------------------------------KAVPVVSVSKASY-LLREGEEFTVTCT 234 (524)
T ss_dssp EECCEECCC--------------------------------------------CSCCEEECSCSEE-EEETTSCEEEEEE
T ss_pred EEEEEEeCC--------------------------------------------CCCCcEEecCCcc-eEEcCCcEEEEEE
Confidence 677665221 2367776665554 5889999999999
Q ss_pred EeeCCCCCCe-EEEeecCeec--CCCCCceee---eeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCCc
Q psy2148 1449 LAPVGDPNMK-VEWFLNGKPL--PHKNRFNPI---YDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPG 1522 (1884)
Q Consensus 1449 ~~~~g~p~~~-i~W~~~~~~l--~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~ 1522 (1884)
+. |.|.+. |.|++++..+ ....+..+. .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|.++|.
T Consensus 235 ~~--g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 312 (524)
T 2ec8_A 235 IK--DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF 312 (524)
T ss_dssp EE--ESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCE
T ss_pred Ee--cCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCc
Confidence 97 888877 9999999884 332222221 123356899999999999999999999999998888888865332
Q ss_pred cccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEEEEEecCCCCeEEEEEcCEE
Q psy2148 1523 IIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHT 1602 (1884)
Q Consensus 1523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~ 1602 (1884)
+...+
T Consensus 313 ------------------------------------------~~~~~--------------------------------- 317 (524)
T 2ec8_A 313 ------------------------------------------INIFP--------------------------------- 317 (524)
T ss_dssp ------------------------------------------EEEEE---------------------------------
T ss_pred ------------------------------------------eEeec---------------------------------
Confidence 11100
Q ss_pred eeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEEEeccCCCe-EEEEeCCeecC
Q psy2148 1603 IVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPIT 1681 (1884)
Q Consensus 1603 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~-i~W~~~~~~~~ 1681 (1884)
.......+.+|+.+.|.|.+.|.|.|. ++|+|+|..+.
T Consensus 318 -----------------------------------------~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~ 356 (524)
T 2ec8_A 318 -----------------------------------------MINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFT 356 (524)
T ss_dssp -----------------------------------------SSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCS
T ss_pred -----------------------------------------CCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeecc
Confidence 011234667888888888888889888 99999998876
Q ss_pred CCC-CeEEEEeC----ceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcC
Q psy2148 1682 SSP-DFQIHTFS----TKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINV 1756 (1884)
Q Consensus 1682 ~~~-~~~~~~~~----~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~ 1756 (1884)
... ++.....+ ...+|.|.++..+|+|.|+|.|.|..|....++.|.|. .+|.|...+. ..+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~----------~~P~i~~~~~---~~~ 423 (524)
T 2ec8_A 357 DKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN----------TKPEILTYDR---LVN 423 (524)
T ss_dssp SSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC----------EEEEEEEEEC---CSS
T ss_pred CCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEe----------cCCeEeeccc---CcC
Confidence 654 22222111 24689999999999999999999999999999999997 4777876554 445
Q ss_pred CceEEEEEEEecCCCcEEEEEeCCEecC--------CCCC---eEEeecCCeEE-EEEccCCCCCCEEEEEEEEeCCeeE
Q psy2148 1757 GQLARFDAKISATKPLDVYWLKNGKKII--------PDIR---YKTLEEDNLFT-LLIIEAVVEDSGAYECVAMNNAGEA 1824 (1884)
Q Consensus 1757 G~~~~l~C~~~g~p~p~v~W~k~~~~l~--------~~~~---~~~~~~~~~~~-L~i~~~~~~d~G~Y~C~a~N~~G~~ 1824 (1884)
| +|.|.+.|.|.|.|+|+|++..+. .+.+ +.....+.... +.|.....+|+|.|+|.|.|.+|..
T Consensus 424 g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~ 500 (524)
T 2ec8_A 424 G---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT 500 (524)
T ss_dssp S---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEE
T ss_pred c---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCce
Confidence 6 999999999999999999987652 1111 22222332222 1244444699999999999999999
Q ss_pred EEEEEEEEEecCC
Q psy2148 1825 RCEAELVVQSKKA 1837 (1884)
Q Consensus 1825 ~~~~~l~V~~~~~ 1837 (1884)
+.++.|.|.+++.
T Consensus 501 ~~~~~l~V~e~~~ 513 (524)
T 2ec8_A 501 SAYFNFAFKGNNK 513 (524)
T ss_dssp ECCCCCCC-----
T ss_pred EEEEEEEEecCCH
Confidence 9999999998654
No 11
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=2.9e-43 Score=456.56 Aligned_cols=376 Identities=13% Similarity=0.108 Sum_probs=278.7
Q ss_pred ccccccCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCe
Q psy2148 908 RIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSG 987 (1884)
Q Consensus 908 ~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G 987 (1884)
.+...+..||.|...+.++.+.+|++++|.|.+. + .|+|+|+|..+. ..+...+|.|.+++.+|+|
T Consensus 28 ~i~l~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~--~----~v~W~~~~~~~~--------~~~~~~~L~I~~~~~~D~G 93 (524)
T 2ec8_A 28 SVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDP--G----FVKWTFEILDET--------NENKQNEWITEKAEATNTG 93 (524)
T ss_dssp -----CCCCCEEESCCSEEECCTTSCEEEEEECT--T----EEEEEEESSSCC--------EEECSSEEEESSCCSTTCE
T ss_pred eEEcCCCCCCccCCCCceEEEeCCCeEEEEEeCC--c----eEEEcCCCcccc--------ccCccceEEEcccchhhCE
Confidence 3445667899999888899999999999999987 4 899999998772 1223347999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcC
Q psy2148 988 LYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVP 1067 (1884)
Q Consensus 988 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 1067 (1884)
.|+|.|.| |. +..+.|.|..++.+ ... ...+.+.
T Consensus 94 ~Y~C~a~n--g~-~~~~~l~V~~p~~~------------------------------------------~~~-~~~~~v~ 127 (524)
T 2ec8_A 94 KYTCTNKH--GL-SNSIYVFVRDPAKL------------------------------------------FLV-DRSLYGK 127 (524)
T ss_dssp EEEEEETT--SC-EEEEEEECCCSSCS------------------------------------------BCC-CCCCCEE
T ss_pred EEEEeecC--Cc-ceEEEEEECCCCcc------------------------------------------ccc-ccceEEE
Confidence 99999999 64 77778888643321 111 1236778
Q ss_pred CCCcEEEEEEEeeCCCCCcEEEEEE-CCEeccCCCceEEEeeCcEEEEEEcccCcCCcE-EEEEEEEcCCeeeEE-EEEE
Q psy2148 1068 EAGKVHFDCRLEPKSDPTMRIDWFF-NGRPFATGSRVKTVYDFGFISLDMDYVYARDSG-EYICRATNKWGTAMT-KAKV 1144 (1884)
Q Consensus 1068 ~g~~~~l~C~v~~~~~p~~~v~W~k-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~G~~~~-~~~l 1144 (1884)
+|+.+.|.|.+. +.|.+.|.||+ ||..+..+.++....+ + .|.|.++..+|+| .|+|.|.|..|...+ .+.|
T Consensus 128 ~G~~v~l~C~~~--~~~~~~v~W~~~~g~~l~~~~~~~~~~~-~--~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l 202 (524)
T 2ec8_A 128 EDNDTLVRCPLT--DPEVTNYSLKGCQGKPLPKDLRFIPDPK-A--GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFIL 202 (524)
T ss_dssp TTSCEEECCCBS--CCCCSCEEEECSSSCCCCSSCEEEEETT-T--EEEEESCCGGGTTCEEEEEEC----CCCCCCEEC
T ss_pred cCCeEEEECcCC--CCccceEEEEccCCcCcCCCCceeECCC-c--cEEEeccchhhCCceEEEEEEECCceEEEEEEEE
Confidence 999999999997 66668999998 8999987776654433 2 6999999999999 999999998775533 4445
Q ss_pred EEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccc
Q psy2148 1145 ICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELE 1224 (1884)
Q Consensus 1145 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 1224 (1884)
.|..
T Consensus 203 ~V~~---------------------------------------------------------------------------- 206 (524)
T 2ec8_A 203 KVRP---------------------------------------------------------------------------- 206 (524)
T ss_dssp CEEC----------------------------------------------------------------------------
T ss_pred EEEe----------------------------------------------------------------------------
Confidence 4431
Q ss_pred cccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcce-EEEecc
Q psy2148 1225 KHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLR-VECSLS 1303 (1884)
Q Consensus 1225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~-~~W~~~ 1303 (1884)
....+|.|...+.+..+.+|+.++|.|.+.+. |.+. +.|+++
T Consensus 207 -----------------------------------~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~--p~p~~i~W~~~ 249 (524)
T 2ec8_A 207 -----------------------------------AFKAVPVVSVSKASYLLREGEEFTVTCTIKDV--SSSVYSTWKRE 249 (524)
T ss_dssp -----------------------------------CCCSCCEEECSCSEEEEETTSCEEEEEEEEES--STTCEEEEEET
T ss_pred -----------------------------------CCCCCCcEEecCCcceEEcCCcEEEEEEEecC--CCcEEEEEEeC
Confidence 01246777777888899999999999999863 5554 999999
Q ss_pred cccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCceeecc
Q psy2148 1304 TAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQN 1383 (1884)
Q Consensus 1304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~ 1383 (1884)
+..+..... .+..............|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+....
T Consensus 250 ~~~~~~~~~------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~ 317 (524)
T 2ec8_A 250 NSQTKLQEK------------YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFP 317 (524)
T ss_dssp TCSCCCCEE------------EEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEE
T ss_pred CCCCccccc------------cccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeec
Confidence 986311100 00000100012345689999999999999999999999998889999998766543210
Q ss_pred cCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCe-EEEe
Q psy2148 1384 QVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMK-VEWF 1462 (1884)
Q Consensus 1384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~-i~W~ 1462 (1884)
. ......+.+|+.++|.|.+. |.|.|. |.|+
T Consensus 318 ~----------------------------------------------~~~~~~v~~G~~v~l~C~~~--g~P~p~~v~W~ 349 (524)
T 2ec8_A 318 M----------------------------------------------INTTVFVNDGENVDLIVEYE--AFPKPEHQQWI 349 (524)
T ss_dssp S----------------------------------------------SCSEEEECTTCCEEEEEEEE--EESCCCEEEEE
T ss_pred C----------------------------------------------CCceEEEcCCCcEEEEEEEe--ecCCCcEEEEE
Confidence 0 01223578999999999986 999999 9999
Q ss_pred ecCeecCCCC-CceeeeeC----ceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCC
Q psy2148 1463 LNGKPLPHKN-RFNPIYDF----GYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKP 1521 (1884)
Q Consensus 1463 ~~~~~l~~~~-~~~~~~~~----~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p 1521 (1884)
|+|..+.... ++.....+ ....|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|
T Consensus 350 k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 413 (524)
T 2ec8_A 350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP 413 (524)
T ss_dssp SSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE
T ss_pred ECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCC
Confidence 9999987765 34333332 35789999999999999999999999998888888886543
No 12
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=1.2e-41 Score=448.80 Aligned_cols=477 Identities=18% Similarity=0.223 Sum_probs=327.1
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCC---cEEEEeeCCEEcc--------------CCCcEEEEe--eCCeEEEEEccC
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPS---MTVEWFHNGKALS--------------AGSRIKTIN--DFGFVILEINDV 981 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~---~~v~W~~~g~~i~--------------~~~~~~~~~--~~~~~~L~I~~~ 981 (1884)
..++++.+.+|++++|.|.+. +.|. +.|.|+|++..+. ...|+.+.. .++.+.|.|.++
T Consensus 5 ~~P~~v~v~~G~~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v 82 (585)
T 2ocw_A 5 FGPEEVNSVEGNSVSITCYYP--PTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQL 82 (585)
T ss_pred cCcceeEEecCCcEEEEEeCC--CCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCC
Confidence 346678999999999999998 4443 3899999986431 124555544 456678999999
Q ss_pred CCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecC
Q psy2148 982 YLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQ 1061 (1884)
Q Consensus 982 ~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1061 (1884)
+.+|+|.|+|.|.|..|..+..+.|.|..+|.+ .....
T Consensus 83 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~------------------------------------------~~~~~ 120 (585)
T 2ocw_A 83 SQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGL------------------------------------------LNDTK 120 (585)
T ss_pred CcccCEEEEEEcccCCCCceEEEEEEEecCccc------------------------------------------cCCCc
Confidence 999999999999999998888999999865432 22222
Q ss_pred CCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEecc----C---------CCceEEEeeC---cEEEEEEcccCcCCcE
Q psy2148 1062 DNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFA----T---------GSRVKTVYDF---GFISLDMDYVYARDSG 1125 (1884)
Q Consensus 1062 ~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~----~---------~~~~~~~~~~---~~~~l~i~~~~~~d~G 1125 (1884)
.+.+.+|+.+.|.|.+.+ +.|.+.+.|+|++..+. . ..++.+..++ +...|.|.++..+|+|
T Consensus 121 -~~~v~~G~~v~l~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G 198 (585)
T 2ocw_A 121 -VYTVDLGRTVTINCPFKT-ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAG 198 (585)
T ss_pred -cEEEEcCCCEEEEEEecC-CCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCe
Confidence 256789999999999973 34567899999986432 1 2344443332 3458999999999999
Q ss_pred EEEEEEEcCCeeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhccccccccc
Q psy2148 1126 EYICRATNKWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWY 1205 (1884)
Q Consensus 1126 ~Y~C~a~n~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 1205 (1884)
.|+|.|.|..|..+..+.|.|..++
T Consensus 199 ~Y~C~a~n~~g~~~~~~~l~V~~~~------------------------------------------------------- 223 (585)
T 2ocw_A 199 QYLCQAGDDSNSNKKNADLQVLKPE------------------------------------------------------- 223 (585)
T ss_pred EEEEEeccCCccccceEEEEEccCC-------------------------------------------------------
Confidence 9999999999998888888875311
Q ss_pred ccchhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEE
Q psy2148 1206 DSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFE 1285 (1884)
Q Consensus 1206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~ 1285 (1884)
| ..+.+.+|+.+.|.
T Consensus 224 -----------------------------------------------------------p------~~~~~~~G~~v~l~ 238 (585)
T 2ocw_A 224 -----------------------------------------------------------P------ELVYEDLRGSVTFH 238 (585)
T ss_pred -----------------------------------------------------------C------ceeEEcCCCcEEEE
Confidence 1 22357789999999
Q ss_pred EEEeecCCCc-ceEEEe-cccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEcccc
Q psy2148 1286 TRVEPRVDPR-LRVECS-LSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHG 1363 (1884)
Q Consensus 1286 c~v~~~~~p~-~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 1363 (1884)
|.+.. +.|. +.+.|+ +++........... ........+... ......+.+.|.|.+++.+|+|.|+|.|.|. |
T Consensus 239 C~~~~-~~~~~~~~~w~~~~g~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g 313 (585)
T 2ocw_A 239 CALGP-EVANVAKFLCRQSSGENCDVVVNTLG--KRAPAFEGRILL-NPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-G 313 (585)
T ss_pred EEcCC-CCCCceEEEEEeCCCCCcceEEeCCC--cCCcccCCceEe-eccCCCcEEEEEEccCChhhCEEEEEEEEcC-C
Confidence 99743 3333 789997 88742221100000 000000011100 0011245568999999999999999999995 5
Q ss_pred cee-----eeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccc
Q psy2148 1364 EAF-----TKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLV 1438 (1884)
Q Consensus 1364 ~~~-----~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~ 1438 (1884)
... ..+.|.|..+|.+ ...+ ....+.
T Consensus 314 ~~~~~~~~~~~~l~V~~~p~~------------------------------------------------~~~~-~~~~~~ 344 (585)
T 2ocw_A 314 QLQEGSPIQAWQLFVNEESTI------------------------------------------------PRSP-TVVKGV 344 (585)
T ss_pred CccccCceeeEEEEEeccccc------------------------------------------------ccCC-cceEEE
Confidence 443 6678888766543 1112 123477
Q ss_pred cccceEEEEEEeeCCCCCCeE----EEee--cCe--ecCC---------CCCceeee--eCceEEEEEeeeccCCCeEEE
Q psy2148 1439 EMQSTKFECQLAPVGDPNMKV----EWFL--NGK--PLPH---------KNRFNPIY--DFGYVAMNFGWVYPEDSGEYL 1499 (1884)
Q Consensus 1439 ~g~~~~l~C~~~~~g~p~~~i----~W~~--~~~--~l~~---------~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~ 1499 (1884)
+|+.+.|.|.+. |.|.+.+ .|++ +|. .+.. +.++.+.. .++..+|.|.+++.+|+|.|+
T Consensus 345 ~G~~v~l~C~~~--~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~ 422 (585)
T 2ocw_A 345 AGSSVAVLCPYN--RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW 422 (585)
T ss_pred eCCcEEEEEecC--CCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEE
Confidence 999999999986 9999988 7999 887 4432 23333322 345567999999999999999
Q ss_pred EEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCc
Q psy2148 1500 CRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEP 1579 (1884)
Q Consensus 1500 c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~ 1579 (1884)
|.| |..|....++.|.|... +|.+.. +.+..+.+|++
T Consensus 423 C~a-n~~g~~~~~~~l~V~~~-----------------------------------------~p~~~~-~~~~~v~~G~~ 459 (585)
T 2ocw_A 423 CLT-NGDTLWRTTVEIKIIEG-----------------------------------------EPNLKV-PGNVTAVLGET 459 (585)
T ss_pred Ecc-cCCCccceeEEEEEecC-----------------------------------------cccccc-CCceeEecCCc
Confidence 999 99998888888888642 222222 45566778888
Q ss_pred eEEEEEEe----cCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCC
Q psy2148 1580 ARFCTRVT----GYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQD 1655 (1884)
Q Consensus 1580 ~~l~C~~~----g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~ 1655 (1884)
+.|.|.+. |.|.|.++|+++|..+.....
T Consensus 460 v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~----------------------------------------------- 492 (585)
T 2ocw_A 460 LKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQD----------------------------------------------- 492 (585)
T ss_pred EEEEEEecCCCCCCccEEEEEeecCceeeeccC-----------------------------------------------
Confidence 88888776 556666677766655421000
Q ss_pred eEEEEEEEeccCCCeEEEEeCCeecCCCCCe-EEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEE-EEEEEEEecc
Q psy2148 1656 QARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKR 1733 (1884)
Q Consensus 1656 ~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~-~~~l~V~~~~ 1733 (1884)
. .....+ .+...+..+.|.|.++..+|+|.|+|.|.|..|.... .+.|.|.+++
T Consensus 493 ----------~--------------~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 493 ----------E--------------GPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred ----------C--------------CCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 0 000000 1111123467999999999999999999999987554 4899998644
No 13
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=4.1e-42 Score=437.32 Aligned_cols=396 Identities=13% Similarity=0.164 Sum_probs=267.7
Q ss_pred eeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCC
Q psy2148 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKH 997 (1884)
Q Consensus 918 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 997 (1884)
.+.... .+.|.+|++++|+|.+. +.|...+.|++++..+.....+... ..+...|.|.+++.+|+|.|+|.|.|..
T Consensus 51 ~~~~~~-~~~v~~g~~~~L~c~~~--~~~~~~~~W~~~~~~l~~~~~~~~~-~r~~~SL~I~~v~~~D~G~Y~C~~~n~~ 126 (527)
T 3qs9_E 51 TVYEAA-AVEVDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEA 126 (527)
T ss_dssp -----C-EEEECSSCCEEEEEECS--CCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--
T ss_pred ceeeee-eEEEeccccEEEEEEEe--cCCceeEEEEecCCccCcccccCCC-cceEEEEEECcCChhhCeeEEEEEEecc
Confidence 344444 78999999999999998 6777899999999988776666432 2345679999999999999999999999
Q ss_pred eeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEE
Q psy2148 998 GEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCR 1077 (1884)
Q Consensus 998 G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~ 1077 (1884)
|..+..+.|.|.. .....+ ..|.+ ...|+.+.|.|.
T Consensus 127 ~~~~~~~~v~v~~--~~~~~~---------------------------------~~p~~---------~~~~~~~~L~C~ 162 (527)
T 3qs9_E 127 TNYTILFTVSIRN--TLLYTL---------------------------------RRPYF---------RKMENQDALVCI 162 (527)
T ss_dssp CEEEEEEEEEEC-------CE---------------------------------EEEEE---------EECSSSSCEEEE
T ss_pred ccEEEEEEEEECC--ceeecc---------------------------------CCCcE---------EecCCceEEEEE
Confidence 9888777777752 111000 11111 234666789999
Q ss_pred EeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEE-EEEEEeecccccccc
Q psy2148 1078 LEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK-AKVICKAKHDIVTES 1156 (1884)
Q Consensus 1078 v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~-~~l~v~~~~~~~~~~ 1156 (1884)
+. |.|.|.|.|++++..+..... ............+..+|+|.|+|.|.|..|..... +.|.|..++.
T Consensus 163 a~--G~P~P~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~----- 231 (527)
T 3qs9_E 163 SE--SVPEPIVEWVLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ----- 231 (527)
T ss_dssp EE--ESSCCEEEEEEC-----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCC-----
T ss_pred Ec--eecCCeEEEEECCCCCccccc----cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCc-----
Confidence 97 889999999999887642211 11111223344456889999999999999987764 4454432111
Q ss_pred ccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccccccccccccCCC
Q psy2148 1157 QLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQLPD 1236 (1884)
Q Consensus 1157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 (1884)
T Consensus 232 -------------------------------------------------------------------------------- 231 (527)
T 3qs9_E 232 -------------------------------------------------------------------------------- 231 (527)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccce
Q psy2148 1237 SMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTA 1316 (1884)
Q Consensus 1237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~ 1316 (1884)
+ .+.+..+.+|+++.|.|.+.+ +.|.+.+.|++++..+........
T Consensus 232 ------------------------------~--~p~~~~v~~G~~v~L~C~~~~-g~p~p~i~W~k~g~~l~~~~~~~~- 277 (527)
T 3qs9_E 232 ------------------------------T--TLPQLFLKVGEPLWIRCKAVH-VNHGFGLTWELENKALEEGNYFEM- 277 (527)
T ss_dssp ------------------------------C--SCCEEEECTTSCEEEEEEEEE-SSSCCCEEEECSSSCCCGGGEEEE-
T ss_pred ------------------------------c--CCCceEEeCCCeEEEEEEEcc-CCCCeEEEEEECCEECCCCceeee-
Confidence 1 123568899999999999973 568899999999987654421100
Q ss_pred EEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCceeecccCCcchhhhHHHH
Q psy2148 1317 FLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLKTEALI 1396 (1884)
Q Consensus 1317 ~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~ 1396 (1884)
.............+|.|.+++.+|+|.|+|.|.|. ...++.|.|..+|.+...
T Consensus 278 ----------~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~-------------- 330 (527)
T 3qs9_E 278 ----------STYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINAT-------------- 330 (527)
T ss_dssp ----------EEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECC--------------
T ss_pred ----------eeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccc--------------
Confidence 00000001223357999999999999999999997 566788888766653211
Q ss_pred HHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCcee
Q psy2148 1397 QMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNP 1476 (1884)
Q Consensus 1397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~ 1476 (1884)
| ......+.+|+.+.|.|.+. |.|.|.|+|+|+|..|..+.++..
T Consensus 331 ----------------------------~-----~~~~~~v~~G~~v~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~ 375 (527)
T 3qs9_E 331 ----------------------------N-----SSEDYEIDQYEEFCFSVRFK--AYPQIRCTWTFSRKSFPCEQKGLD 375 (527)
T ss_dssp ----------------------------C-----SCCEECCCTTCCCCEEEEEE--EESCCEEEEEETTEEEECBCCBCS
T ss_pred ----------------------------c-----CcccEEEcCCCeEEEEEEEE--ecCCCEEEEEECCEECcCCccccc
Confidence 0 01123477899999999997 999999999999999976554321
Q ss_pred eeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCcccccc
Q psy2148 1477 IYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVED 1556 (1884)
Q Consensus 1477 ~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1556 (1884)
+...|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 376 ----~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~------------------------------------- 414 (527)
T 3qs9_E 376 ----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR------------------------------------- 414 (527)
T ss_dssp ----SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C-------------------------------------
T ss_pred ----CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec-------------------------------------
Confidence 234799999999999999999999999988888888754
Q ss_pred CCCCCCCeEecCCcccccccCCceEEEEEEecCCCCeEEEEEcCEE
Q psy2148 1557 EKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHT 1602 (1884)
Q Consensus 1557 ~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~ 1602 (1884)
+|.|...+. | ..|.|.+.|+|.|.++|++++..
T Consensus 415 -----~P~i~~~~~------~--~~l~C~a~g~P~p~i~W~~~~~~ 447 (527)
T 3qs9_E 415 -----KPQVLAEAS------A--SQASCFSDGYPLPSWTWKKCSDK 447 (527)
T ss_dssp -----CCEEEECCC------C--E---EEEECSSCCEEEEECCC--
T ss_pred -----CCeEEEeCC------C--CEEEEEEEEEcCCeEEEEECCCC
Confidence 455544432 2 35799999999999999987654
No 14
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-42 Score=437.62 Aligned_cols=436 Identities=14% Similarity=0.121 Sum_probs=289.6
Q ss_pred CcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEE
Q psy2148 1063 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKA 1142 (1884)
Q Consensus 1063 ~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~ 1142 (1884)
.+.|.+|++++|.|.+. +.|...+.|++++..+.....+.. ...+..+|.|.+++.+|+|.|+|.|.|..|......
T Consensus 57 ~~~v~~g~~~~L~c~~~--~~~~~~~~W~~~~~~l~~~~~~~~-~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~ 133 (527)
T 3qs9_E 57 AVEVDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133 (527)
T ss_dssp EEEECSSCCEEEEEECS--CCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred eEEEeccccEEEEEEEe--cCCceeEEEEecCCccCcccccCC-CcceEEEEEECcCChhhCeeEEEEEEeccccEEEEE
Confidence 37889999999999997 777889999999998765544432 224556799999999999999999999999877766
Q ss_pred EEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccc
Q psy2148 1143 KVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTE 1222 (1884)
Q Consensus 1143 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 1222 (1884)
.|.|. +....
T Consensus 134 ~v~v~--~~~~~-------------------------------------------------------------------- 143 (527)
T 3qs9_E 134 TVSIR--NTLLY-------------------------------------------------------------------- 143 (527)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EEEEC--Cceee--------------------------------------------------------------------
Confidence 66554 11000
Q ss_pred cccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEec
Q psy2148 1223 LEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSL 1302 (1884)
Q Consensus 1223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~ 1302 (1884)
..........|+.+.|.|.+.| .|.+.+.|++
T Consensus 144 ----------------------------------------------~~~~p~~~~~~~~~~L~C~a~G--~P~P~i~W~~ 175 (527)
T 3qs9_E 144 ----------------------------------------------TLRRPYFRKMENQDALVCISES--VPEPIVEWVL 175 (527)
T ss_dssp ----------------------------------------------CEEEEEEEECSSSSCEEEEEEE--SSCCEEEEEE
T ss_pred ----------------------------------------------ccCCCcEEecCCceEEEEEEce--ecCCeEEEEE
Confidence 0001122345777889999986 4888999999
Q ss_pred ccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeee-EEEEEeecCceee
Q psy2148 1303 STAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTK-ATISCKKIPTIQL 1381 (1884)
Q Consensus 1303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~p~~~~ 1381 (1884)
++........ ............+..+|+|.|+|.|.|..|..... +.|.|...|.+
T Consensus 176 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~-- 232 (527)
T 3qs9_E 176 CDSQGESCKE---------------------ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT-- 232 (527)
T ss_dssp C----------------------------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--
T ss_pred CCCCCccccc---------------------cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--
Confidence 8764421100 01111123334566899999999999999987654 66666543321
Q ss_pred cccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEE
Q psy2148 1382 QNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEW 1461 (1884)
Q Consensus 1382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W 1461 (1884)
+| ....+.+|+.+.|.|.+. .|.|.+.|+|
T Consensus 233 ------------------------------------------~p-------~~~~v~~G~~v~L~C~~~-~g~p~p~i~W 262 (527)
T 3qs9_E 233 ------------------------------------------TL-------PQLFLKVGEPLWIRCKAV-HVNHGFGLTW 262 (527)
T ss_dssp ------------------------------------------SC-------CEEEECTTSCEEEEEEEE-ESSSCCCEEE
T ss_pred ------------------------------------------CC-------CceEEeCCCeEEEEEEEc-cCCCCeEEEE
Confidence 11 123478999999999984 3899999999
Q ss_pred eecCeecCCCCCcee-eee-----CceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchh
Q psy2148 1462 FLNGKPLPHKNRFNP-IYD-----FGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKS 1535 (1884)
Q Consensus 1462 ~~~~~~l~~~~~~~~-~~~-----~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~ 1535 (1884)
+++|..+.....+.. .+. ....+|.|.+++.+|+|.|+|.|.|. ...++.|.|.++|
T Consensus 263 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p-------------- 325 (527)
T 3qs9_E 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG-------------- 325 (527)
T ss_dssp ECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--C--------------
T ss_pred EECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccC--------------
Confidence 999998865433221 111 12356999999999999999999997 5667778775432
Q ss_pred HHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeecc
Q psy2148 1536 IEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATE 1615 (1884)
Q Consensus 1536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~ 1615 (1884)
.+...+.
T Consensus 326 ----------------------------~i~~~~~--------------------------------------------- 332 (527)
T 3qs9_E 326 ----------------------------FINATNS--------------------------------------------- 332 (527)
T ss_dssp ----------------------------EEECCCS---------------------------------------------
T ss_pred ----------------------------ccccccC---------------------------------------------
Confidence 1111110
Q ss_pred ceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCcee
Q psy2148 1616 TTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS 1695 (1884)
Q Consensus 1616 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 1695 (1884)
.....+.+|+.+.|.|.+.|.|.|.|+|+|+|..+....++. ....
T Consensus 333 ------------------------------~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~ 378 (527)
T 3qs9_E 333 ------------------------------SEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGY 378 (527)
T ss_dssp ------------------------------CCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSS
T ss_pred ------------------------------cccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc----cCCc
Confidence 012345567777777777778888888888887775544321 2456
Q ss_pred EEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEE
Q psy2148 1696 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVY 1775 (1884)
Q Consensus 1696 ~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~ 1775 (1884)
.|.|.++..+|+|.|+|.|.|..|.....+.|.|. .+|.|...+. | ..|.|.+.|.|.|.|+
T Consensus 379 ~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~----------~~P~i~~~~~------~--~~l~C~a~g~P~p~i~ 440 (527)
T 3qs9_E 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR----------RKPQVLAEAS------A--SQASCFSDGYPLPSWT 440 (527)
T ss_dssp EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC------------CCCEEEECCC------C--E---EEEECSSCCEEE
T ss_pred EEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe----------cCCeEEEeCC------C--CEEEEEEEEEcCCeEE
Confidence 79999999999999999999999999999999998 5888876542 3 3579999999999999
Q ss_pred EEeCCEecCCCCC------e-----EEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1776 WLKNGKKIIPDIR------Y-----KTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1776 W~k~~~~l~~~~~------~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
|++++........ + ..........+.|.-...+|+|.|+|.|.|.+|..+..+.|.|.+
T Consensus 441 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~ 510 (527)
T 3qs9_E 441 WKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG 510 (527)
T ss_dssp EECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC----
T ss_pred EEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCC
Confidence 9998765421110 0 001111122333333345699999999999999999999998876
No 15
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=427.87 Aligned_cols=460 Identities=12% Similarity=0.113 Sum_probs=301.7
Q ss_pred CcCcCCCCcEEEEEEEeeCCCCCcEEEEEECC--Eecc------------CCCceEEEeeCcEEEEEEcccCcCCcEEEE
Q psy2148 1063 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG--RPFA------------TGSRVKTVYDFGFISLDMDYVYARDSGEYI 1128 (1884)
Q Consensus 1063 ~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~--~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 1128 (1884)
.+.+.+|+++.|.|.+. +.|.+.|.|||++ ..+. ...|+....+++...|.|.+++.+|+|.|+
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (523)
T 2rcj_C 9 SASGTPGQRVTISCTGT--SSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYY 86 (523)
T ss_pred ceEEecCCcEEEEEEEe--ccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEE
Confidence 36788999999999997 6788999999975 2211 123554444456678999999999999999
Q ss_pred EEEEcCCeee---EEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhccccccccc
Q psy2148 1129 CRATNKWGTA---MTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWY 1205 (1884)
Q Consensus 1129 C~a~n~~G~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 1205 (1884)
|.|.|..|.. ...+.|.|...
T Consensus 87 C~a~n~~g~~~~~~~~~~l~V~~~-------------------------------------------------------- 110 (523)
T 2rcj_C 87 CASWNSSDNSYVFGTGTKVTVLGQ-------------------------------------------------------- 110 (523)
T ss_pred EEEccCCCccccccCceEEEeccC--------------------------------------------------------
Confidence 9999987742 22344444311
Q ss_pred ccchhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEE
Q psy2148 1206 DSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFE 1285 (1884)
Q Consensus 1206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~ 1285 (1884)
...+|.|...+....+.+|+.++|.
T Consensus 111 -------------------------------------------------------~~~~P~~~~~~~~~~~~~g~~v~l~ 135 (523)
T 2rcj_C 111 -------------------------------------------------------PKANPTVTLFPPSSEELQANKATLV 135 (523)
T ss_pred -------------------------------------------------------CCcCCeEEecCCcccccCCCceEEE
Confidence 1134555555556677889999999
Q ss_pred EEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeec----eEEEEEeeecccCceEEEEEEEcc
Q psy2148 1286 TRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLG----FVSLDIDYVYPEDQGEYVCRAYND 1361 (1884)
Q Consensus 1286 c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~I~~~~~~d~G~Y~C~a~n~ 1361 (1884)
|.+.+...+.+.+.|+|++..+....... .......+ ...|.|.+++.+|+|.|+|.|.|.
T Consensus 136 C~~~g~~p~~~~v~W~k~g~~l~~~~~~~---------------~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 200 (523)
T 2rcj_C 136 CLISDFYPGAVTVAWKADGSPVKAGVETT---------------KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE 200 (523)
T ss_pred EEeccccCCceEEEEecCCCCCCCceEec---------------cccccCCCCEEEEEEEEEechhcCCCceEEEEEEec
Confidence 99987433345999999998775431100 00000111 246999999999999999999999
Q ss_pred ccceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCcccccccc
Q psy2148 1362 HGEAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQ 1441 (1884)
Q Consensus 1362 ~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~ 1441 (1884)
.|....++.+.+... ...+|.+... .+...+.+|+
T Consensus 201 ~~~~~~~~~~~~~~~--------------------------------------------~~~~P~v~~~-~~~~~~~~G~ 235 (523)
T 2rcj_C 201 GSTVEKTVAPTECSA--------------------------------------------STKGPSVFPL-APSSKSTSGG 235 (523)
T ss_pred CcccccceeeeecCC--------------------------------------------CCcCCEEEec-CCCcccccCC
Confidence 886555444322100 1234554422 2223467999
Q ss_pred ceEEEEEEeeCCC-CCC-eEEEeecCeecCCCCCceeeeeCc----eEEEEEeeeccCCCeEEEEEEEecCcceEEEEEE
Q psy2148 1442 STKFECQLAPVGD-PNM-KVEWFLNGKPLPHKNRFNPIYDFG----YVAMNFGWVYPEDSGEYLCRATNLYGMDETRAIL 1515 (1884)
Q Consensus 1442 ~~~l~C~~~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l 1515 (1884)
.+.|.|.+. |. |.| .|+|+|+|..+...........++ ...|.|.++..+| |.|+|.|.|..|.....+.|
T Consensus 236 ~~~l~C~~~--g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l 312 (523)
T 2rcj_C 236 TAALGCLVK--DYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV 312 (523)
T ss_pred ceEEEEEEe--ceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEec
Confidence 999999986 65 877 899999998764321111222223 3479999999999 99999999999987666665
Q ss_pred EEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccc-cccCCceEEEEEEecCCC---
Q psy2148 1516 KTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQK-VQEGEPARFCTRVTGYPR--- 1591 (1884)
Q Consensus 1516 ~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~-v~~g~~~~l~C~~~g~p~--- 1591 (1884)
.|... |+.++..+.... +.+|+.+.|.|.+.|.|+
T Consensus 313 ~v~~~-----------------------------------------P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~ 351 (523)
T 2rcj_C 313 EPLSL-----------------------------------------PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDP 351 (523)
T ss_pred CCCcC-----------------------------------------ceEEecCCCchhhcccCCceEEEEEEecccCCCC
Confidence 54321 122233333333 667777777777777543
Q ss_pred -CeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEEEeccCCCe
Q psy2148 1592 -PRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT 1670 (1884)
Q Consensus 1592 -~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~ 1670 (1884)
+.|+|+|||..+.
T Consensus 352 ~~~v~W~k~g~~l~------------------------------------------------------------------ 365 (523)
T 2rcj_C 352 QVKFNWYVDGVQVH------------------------------------------------------------------ 365 (523)
T ss_pred ceEEEEEECCeEcc------------------------------------------------------------------
Confidence 3667777666542
Q ss_pred EEEEeCCeecCCCCCeEEEEe-----CceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeE
Q psy2148 1671 IKWFREDFPITSSPDFQIHTF-----STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSF 1745 (1884)
Q Consensus 1671 i~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~ 1745 (1884)
.......... ...+.|.|.++..+|+|.|+|.|.|..|.......+.+.... ..+|.+
T Consensus 366 -----------~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~------~~~P~v 428 (523)
T 2rcj_C 366 -----------NAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQ------PREPQV 428 (523)
T ss_pred -----------CCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCC------CCCCEE
Confidence 1111000000 012459999999999999999999988776555555531100 157777
Q ss_pred EeccCceEEcCCceEEEEEEEecCCCc--EEEEEeCCEecCCCCCeEE--eecCCe---EEEEEccCCCCCCEEEEEEEE
Q psy2148 1746 LTTISSAVINVGQLARFDAKISATKPL--DVYWLKNGKKIIPDIRYKT--LEEDNL---FTLLIIEAVVEDSGAYECVAM 1818 (1884)
Q Consensus 1746 ~~~~~~~~~~~G~~~~l~C~~~g~p~p--~v~W~k~~~~l~~~~~~~~--~~~~~~---~~L~i~~~~~~d~G~Y~C~a~ 1818 (1884)
...+.......|+.++|.|.+.|.|+| .|+|+|||.++.......+ ..++.. ..|.|.....+|.|.|+|.|.
T Consensus 429 ~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~ 508 (523)
T 2rcj_C 429 YTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVM 508 (523)
T ss_pred EEeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEE
Confidence 655444333345559999999997666 8999999999875433222 222322 245566666678999999999
Q ss_pred eCCe
Q psy2148 1819 NNAG 1822 (1884)
Q Consensus 1819 N~~G 1822 (1884)
|...
T Consensus 509 n~~l 512 (523)
T 2rcj_C 509 HEAL 512 (523)
T ss_pred cCCc
Confidence 9864
No 16
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=5.5e-40 Score=425.68 Aligned_cols=427 Identities=16% Similarity=0.186 Sum_probs=282.2
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEcc------------CCCcEEEEeeCCeEEEEEccCCCCCC
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KALS------------AGSRIKTINDFGFVILEINDVYLRDS 986 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i~------------~~~~~~~~~~~~~~~L~I~~~~~~D~ 986 (1884)
..+.++.+.+|++++|.|.+. +.|.+.|.|+|++ ..+. ...|+.....++.+.|.|.+++.+|+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (523)
T 2rcj_C 5 TQPPSASGTPGQRVTISCTGT--SSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE 82 (523)
T ss_pred ccCCceEEecCCcEEEEEEEe--ccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence 345678999999999999998 6688899999974 2211 13566655556677899999999999
Q ss_pred eEEEEEEEcCCeeE---EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCC
Q psy2148 987 GLYTCKATNKHGEA---TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDN 1063 (1884)
Q Consensus 987 G~Y~C~a~N~~G~~---~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 1063 (1884)
|.|+|.|.|..|.. ...+.|.|...+. .+|.+......
T Consensus 83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~--------------------------------------~~P~~~~~~~~- 123 (523)
T 2rcj_C 83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPK--------------------------------------ANPTVTLFPPS- 123 (523)
T ss_pred EEEEEEEccCCCccccccCceEEEeccCCC--------------------------------------cCCeEEecCCc-
Confidence 99999999987742 3456777753221 34544433332
Q ss_pred cCcCCCCcEEEEEEEeeCCCCC--cEEEEEECCEeccCCCceEEE--eeCc----EEEEEEcccCcCCcEEEEEEEEcCC
Q psy2148 1064 LDVPEAGKVHFDCRLEPKSDPT--MRIDWFFNGRPFATGSRVKTV--YDFG----FISLDMDYVYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1064 ~~v~~g~~~~l~C~v~~~~~p~--~~v~W~k~~~~l~~~~~~~~~--~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 1135 (1884)
..+.+|+.+.|.|.+. |.|+ +.|.|+|||+.+..+.++... ..++ ...|.|.++..+|+|.|+|.|.|..
T Consensus 124 ~~~~~g~~v~l~C~~~--g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 201 (523)
T 2rcj_C 124 SEELQANKATLVCLIS--DFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG 201 (523)
T ss_pred ccccCCCceEEEEEec--cccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecC
Confidence 4556899999999998 5543 499999999998765433211 1222 2469999999999999999999998
Q ss_pred eeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhh
Q psy2148 1136 GTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKE 1215 (1884)
Q Consensus 1136 G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 1215 (1884)
|.....+.+.+..
T Consensus 202 ~~~~~~~~~~~~~------------------------------------------------------------------- 214 (523)
T 2rcj_C 202 STVEKTVAPTECS------------------------------------------------------------------- 214 (523)
T ss_pred cccccceeeeecC-------------------------------------------------------------------
Confidence 8655444332110
Q ss_pred ccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCc
Q psy2148 1216 RANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPR 1295 (1884)
Q Consensus 1216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~ 1295 (1884)
....+|.+........+.+|+.+.|.|.+.+. .|.
T Consensus 215 --------------------------------------------~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~-~P~ 249 (523)
T 2rcj_C 215 --------------------------------------------ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY-FPQ 249 (523)
T ss_pred --------------------------------------------CCCcCCEEEecCCCcccccCCceEEEEEEece-eCC
Confidence 01123333322233456899999999999863 354
Q ss_pred c-eEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEe
Q psy2148 1296 L-RVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCK 1374 (1884)
Q Consensus 1296 ~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 1374 (1884)
+ .+.|++++..+..... .+...... .......|.|.++..+| |.|+|.|.|..|.....+.|.|.
T Consensus 250 p~~v~W~k~g~~~~~~~~------------~~~~~~~g-~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~ 315 (523)
T 2rcj_C 250 PVTVSWNSGALTSGVHTF------------PAVLQSSG-LYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPL 315 (523)
T ss_pred CeEEEEecCCcccceEeC------------CcEecCCC-cEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCC
Confidence 5 8999999976432100 00000000 00113579999999999 99999999999987666666553
Q ss_pred ecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCC
Q psy2148 1375 KIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGD 1454 (1884)
Q Consensus 1375 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~ 1454 (1884)
..|. .++..+.....+.+|+.+.|+|.+. |.
T Consensus 316 ~~P~-----------------------------------------------~~~~~p~~~~~v~~g~~~~l~C~~~--g~ 346 (523)
T 2rcj_C 316 SLPS-----------------------------------------------VFLFPPKPKDTLMISRTPEVTCVVV--DV 346 (523)
T ss_pred cCce-----------------------------------------------EEecCCCchhhcccCCceEEEEEEe--cc
Confidence 3222 2222222222367899999999997 75
Q ss_pred CC----CeEEEeecCeecCCCCCcee-eeeCce----EEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCCcccc
Q psy2148 1455 PN----MKVEWFLNGKPLPHKNRFNP-IYDFGY----VAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIY 1525 (1884)
Q Consensus 1455 p~----~~i~W~~~~~~l~~~~~~~~-~~~~~~----~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~ 1525 (1884)
|+ +.|+|+|+|..+........ ...++. ..|.|.++..+|+|.|+|.|.|..|.......|.+..
T Consensus 347 ~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~------ 420 (523)
T 2rcj_C 347 SHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAK------ 420 (523)
T ss_pred cCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEccc------
Confidence 53 59999999999876543321 122222 4588999999999999999999887765554444310
Q ss_pred ccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEEEEEecCCCC--eEEEEEcCEEe
Q psy2148 1526 ESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRP--RVMWLINGHTI 1603 (1884)
Q Consensus 1526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~v~W~~~g~~i 1603 (1884)
.+..+|.+...+.......|+.++|.|.+.|.|+| .++|++||..+
T Consensus 421 --------------------------------~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~ 468 (523)
T 2rcj_C 421 --------------------------------GQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPE 468 (523)
T ss_pred --------------------------------CCCCCCEEEEeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEEC
Confidence 12335554443322222233347778877776554 67777777665
No 17
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=2.2e-40 Score=420.85 Aligned_cols=421 Identities=15% Similarity=0.113 Sum_probs=293.5
Q ss_pred cCcCCCCcEEEEEEEeeCCCCCcEE-----EEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeee
Q psy2148 1064 LDVPEAGKVHFDCRLEPKSDPTMRI-----DWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTA 1138 (1884)
Q Consensus 1064 ~~v~~g~~~~l~C~v~~~~~p~~~v-----~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~ 1138 (1884)
..+.+|++++|.|.+. | |.+.+ .|+|++..+... ....|.|.++.. |+| |+|.|.|..|..
T Consensus 9 ~~v~~G~~v~L~C~~~--g-p~p~~~~~~~~w~k~~~~~~~~---------~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~ 74 (450)
T 1z7z_I 9 VILPRGGSVLVTCSTS--C-DQPMLLGIETPLPKKELLLPGN---------NRKVYELSNVQE-DSQ-PMCYSNCPDGQS 74 (450)
T ss_dssp EEEETTEEEEEEEECC--S-SCCCEEEECSSSCEEECCSSTT---------TEEEEEEEEECS-CBC-CEEEEEETTEEE
T ss_pred eEEecCCcEEEEEEcc--C-CCcccccccceeeecceEecCC---------CceEEEEEeccc-CCe-eEEEEeCCCCcc
Confidence 6778999999999997 6 77888 999998865432 233788999977 999 999999888888
Q ss_pred EEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccc
Q psy2148 1139 MTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERAN 1218 (1884)
Q Consensus 1139 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 1218 (1884)
+..+.|.|..+|.+
T Consensus 75 ~~~~~l~V~~~P~~------------------------------------------------------------------ 88 (450)
T 1z7z_I 75 TAKTFLTVYWTPER------------------------------------------------------------------ 88 (450)
T ss_dssp EEECEEEEEBCCSE------------------------------------------------------------------
T ss_pred eeEEEEEEEeCCCc------------------------------------------------------------------
Confidence 88888887643321
Q ss_pred cccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcc--
Q psy2148 1219 ESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRL-- 1296 (1884)
Q Consensus 1219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~-- 1296 (1884)
+...+.+..+.+|+.++|.|.+.+. |.+
T Consensus 89 ------------------------------------------------~~~~~~~~~v~~G~~v~L~C~~~g~--~~~~~ 118 (450)
T 1z7z_I 89 ------------------------------------------------VELAPLPSWQPVGKNLTLRCQVEGG--APRAN 118 (450)
T ss_dssp ------------------------------------------------EEECCCCSEECTTSEEEEEEEEECC--BCGGG
T ss_pred ------------------------------------------------ceecCCCceEeeCCeEEEEEEecCC--CCCcC
Confidence 2233455678999999999999863 444
Q ss_pred -eEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEee
Q psy2148 1297 -RVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKK 1375 (1884)
Q Consensus 1297 -~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 1375 (1884)
.+.|+|++..+..... .......+|.|.+++.+|+|.|+|.|.|..|.......+.+..
T Consensus 119 ~~v~W~k~g~~l~~~~~--------------------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~ 178 (450)
T 1z7z_I 119 LTVVLLRGEKELKREPA--------------------VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178 (450)
T ss_dssp EEEEEEETTEEEEEEEC--------------------CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECC
T ss_pred cEEEEeeCCEEeecccc--------------------cccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccC
Confidence 8999999886643310 0122234899999999999999999999988544333222222
Q ss_pred cCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCC-
Q psy2148 1376 IPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGD- 1454 (1884)
Q Consensus 1376 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~- 1454 (1884)
+..+.+... ...+|.+... ..+.+|+.+.|.|.+. |.
T Consensus 179 ~~~l~v~~~------------------------------------~~~~p~~~~~----~~v~~G~~v~l~C~~~--g~~ 216 (450)
T 1z7z_I 179 PYQLQTFVL------------------------------------PATPPQLVSP----RVLEVDTQGTVVCSLD--GLF 216 (450)
T ss_dssp CEECEECCC------------------------------------CSSCCEEECC----SEEETTSEEEEEEEEE--SCT
T ss_pred ccceeeecc------------------------------------CCCCCEecCc----eeEEeCCcEEEEEEee--CCC
Confidence 211111000 0135555432 3578999999999997 77
Q ss_pred C--CCeEEEeecCeecCCCCCceeeeeCceEEEE-EeeeccCCCe--EEEEEEEecCcceEEEEEEEEeCCCccccccCC
Q psy2148 1455 P--NMKVEWFLNGKPLPHKNRFNPIYDFGYVAMN-FGWVYPEDSG--EYLCRATNLYGMDETRAILKTTGKPGIIYESQL 1529 (1884)
Q Consensus 1455 p--~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~-i~~~~~~d~G--~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~ 1529 (1884)
| .+.+.|+++|..+.. + +...++...+. +.+++.+|+| .|+|.|.|..|.....+.|.|...|
T Consensus 217 P~~~~~~~W~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~-------- 284 (450)
T 1z7z_I 217 PVSEAQVHLALGDQRLNP--T--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP-------- 284 (450)
T ss_dssp TGGGCEEEEEETTEECCC--E--EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC--------
T ss_pred CCCceEEEEeCCCEeCCc--e--EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC--------
Confidence 7 799999999999865 2 22333322222 2377999999 9999999999998888888886532
Q ss_pred CccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEE
Q psy2148 1530 PKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVR 1609 (1884)
Q Consensus 1530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~ 1609 (1884)
+|.|... +.
T Consensus 285 --------------------------------~p~i~~~--~~------------------------------------- 293 (450)
T 1z7z_I 285 --------------------------------APNVILT--KP------------------------------------- 293 (450)
T ss_dssp --------------------------------CCEEEES--CS-------------------------------------
T ss_pred --------------------------------CCeEecC--Ce-------------------------------------
Confidence 2333211 12
Q ss_pred EEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEE
Q psy2148 1610 KITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH 1689 (1884)
Q Consensus 1610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~ 1689 (1884)
.+.+|+.+.|.|.+. |.|.++| +|..+..
T Consensus 294 ----------------------------------------~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~------- 322 (450)
T 1z7z_I 294 ----------------------------------------EVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP------- 322 (450)
T ss_dssp ----------------------------------------EEETTCEEEEEEEC--------------------------
T ss_pred ----------------------------------------eEeCCCcEEEEEecC--CCCEeEE--CCEEcCC-------
Confidence 344555555555555 5556666 4444311
Q ss_pred EeCceeEEEEcccccCCCeEEEEEEEeCCc-e---EEEEEEEEEEecccCCCCCCCCCeEEecc--CceEEcCCceEEEE
Q psy2148 1690 TFSTKSILIMRQVFMEDSGVFAVIAENRGG-K---AKCSANLVVEEKRQGGRGGVVPPSFLTTI--SSAVINVGQLARFD 1763 (1884)
Q Consensus 1690 ~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g-~---~~~~~~l~V~~~~~~~~~~~~~P~~~~~~--~~~~~~~G~~~~l~ 1763 (1884)
.+....|.|.++..+|+|.|+|.|.|..| . ...++.|.|.. +|.+...+ .+..+.+|+.++|.
T Consensus 323 -~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~----------~P~~~~~~~p~~~~~~~g~~~~l~ 391 (450)
T 1z7z_I 323 -LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY----------GPRLDERDCPGNWTWPENSQQTPM 391 (450)
T ss_dssp --CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEE----------EEECCSTTSCSEEEEETTCEECCC
T ss_pred -CCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEec----------CCceeeccCCCceeEcCCCeEEEE
Confidence 11223599999999999999999997655 3 44778888884 56665543 56789999999999
Q ss_pred EEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1764 AKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1764 C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
|.+.|.|.|.|+|+|+|..+..+ +. .| ++..+|+|.|+|.|.|.+|.++.++.|.|.+
T Consensus 392 C~~~g~P~p~i~W~~~g~~~~~~--------g~--~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 392 CQAWGNPLPELKCLKDGTFPLPI--------GE--SV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449 (450)
T ss_dssp CCCEEESCCEEEEEETTTEECCT--------TS--CE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EecccCCCCcEEEEECCcccCCC--------CC--eE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence 99999999999999999844332 21 12 5788999999999999999999999999985
No 18
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=4.3e-40 Score=418.25 Aligned_cols=415 Identities=15% Similarity=0.128 Sum_probs=292.6
Q ss_pred ccCCCCcEEEEEEEeecCCCCCeE-----EEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEEEEecCceEE
Q psy2148 718 DLREGENAHFEARLTPTDDPKLKV-----EWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAV 792 (1884)
Q Consensus 718 ~v~~G~~~~l~C~~~~~g~p~~~v-----~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~ 792 (1884)
.+.+|++++|.|.+. | |.|.+ .|+|++..+.. . ....|.|.+++. |+| |+|.|.|..+..+
T Consensus 10 ~v~~G~~v~L~C~~~--g-p~p~~~~~~~~w~k~~~~~~~-~--------~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~ 75 (450)
T 1z7z_I 10 ILPRGGSVLVTCSTS--C-DQPMLLGIETPLPKKELLLPG-N--------NRKVYELSNVQE-DSQ-PMCYSNCPDGQST 75 (450)
T ss_dssp EEETTEEEEEEEECC--S-SCCCEEEECSSSCEEECCSST-T--------TEEEEEEEEECS-CBC-CEEEEEETTEEEE
T ss_pred EEecCCcEEEEEEcc--C-CCcccccccceeeecceEecC-C--------CceEEEEEeccc-CCe-eEEEEeCCCCcce
Confidence 688999999999987 5 77888 99999876542 2 234789999987 999 9999988777777
Q ss_pred EEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEeecCCCCccc
Q psy2148 793 TSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEG 872 (1884)
Q Consensus 793 ~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~~~~~~~~~~ 872 (1884)
..+.|.|..+|.+
T Consensus 76 ~~~~l~V~~~P~~------------------------------------------------------------------- 88 (450)
T 1z7z_I 76 AKTFLTVYWTPER------------------------------------------------------------------- 88 (450)
T ss_dssp EECEEEEEBCCSE-------------------------------------------------------------------
T ss_pred eEEEEEEEeCCCc-------------------------------------------------------------------
Confidence 7777776443322
Q ss_pred ccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCc---E
Q psy2148 873 TIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSM---T 949 (1884)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~---~ 949 (1884)
+...+.+..+.+|+.+.|.|.+. +.|++ .
T Consensus 89 ----------------------------------------------~~~~~~~~~v~~G~~v~L~C~~~--g~~~~~~~~ 120 (450)
T 1z7z_I 89 ----------------------------------------------VELAPLPSWQPVGKNLTLRCQVE--GGAPRANLT 120 (450)
T ss_dssp ----------------------------------------------EEECCCCSEECTTSEEEEEEEEE--CCBCGGGEE
T ss_pred ----------------------------------------------ceecCCCceEeeCCeEEEEEEec--CCCCCcCcE
Confidence 12334556788999999999998 66666 9
Q ss_pred EEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEE--------EEEEEEEeecccccccchh
Q psy2148 950 VEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATT--------SCKLTVKGRQGIDVEPQVS 1021 (1884)
Q Consensus 950 v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~--------~~~l~V~~~~~~~~~p~~~ 1021 (1884)
|+|+|+|.+|...... ......+|.|.++..+|+|.|+|.|.|..|.... ...|.|...+
T Consensus 121 v~W~k~g~~l~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~--------- 188 (450)
T 1z7z_I 121 VVLLRGEKELKREPAV---GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP--------- 188 (450)
T ss_dssp EEEEETTEEEEEEECC---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCC---------
T ss_pred EEEeeCCEEeeccccc---ccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccC---------
Confidence 9999999998654321 1223358999999999999999999999875332 2233332210
Q ss_pred HhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCC-C--CcEEEEEECCEecc
Q psy2148 1022 AIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSD-P--TMRIDWFFNGRPFA 1098 (1884)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~-p--~~~v~W~k~~~~l~ 1098 (1884)
..+|.+.. ...+.+|+.+.|.|.+. |. | .+.+.|+++|..+.
T Consensus 189 -----------------------------~~~p~~~~----~~~v~~G~~v~l~C~~~--g~~P~~~~~~~W~~~~~~~~ 233 (450)
T 1z7z_I 189 -----------------------------ATPPQLVS----PRVLEVDTQGTVVCSLD--GLFPVSEAQVHLALGDQRLN 233 (450)
T ss_dssp -----------------------------SSCCEEEC----CSEEETTSEEEEEEEEE--SCTTGGGCEEEEEETTEECC
T ss_pred -----------------------------CCCCEecC----ceeEEeCCcEEEEEEee--CCCCCCceEEEEeCCCEeCC
Confidence 13344322 15677999999999998 55 6 78999999999987
Q ss_pred CCCceEEEeeCcEEEEEEcccCcCCcE--EEEEEEEcCCeeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCC
Q psy2148 1099 TGSRVKTVYDFGFISLDMDYVYARDSG--EYICRATNKWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTP 1176 (1884)
Q Consensus 1099 ~~~~~~~~~~~~~~~l~i~~~~~~d~G--~Y~C~a~n~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1176 (1884)
. ++....+.....+.+ ++..+|+| .|+|.|.|..|..+..+.|.|...+
T Consensus 234 ~--~~~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~-------------------------- 284 (450)
T 1z7z_I 234 P--TVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP-------------------------- 284 (450)
T ss_dssp C--EEEEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC--------------------------
T ss_pred c--eEEecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC--------------------------
Confidence 6 222222211122233 77899999 9999999999999988888887421
Q ss_pred CccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCcccc
Q psy2148 1177 EEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIE 1256 (1884)
Q Consensus 1177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 (1884)
T Consensus 285 -------------------------------------------------------------------------------- 284 (450)
T 1z7z_I 285 -------------------------------------------------------------------------------- 284 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeee
Q psy2148 1257 EDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDL 1336 (1884)
Q Consensus 1257 ~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1336 (1884)
+|.|. +.+..+.+|+.++|.|.+. |.+.+.| +|..+... +
T Consensus 285 -------~p~i~--~~~~~v~~G~~v~l~C~~~----p~p~i~W--~g~~~~~~-------------------------~ 324 (450)
T 1z7z_I 285 -------APNVI--LTKPEVSEGTEVTVKCEAH----PRAKVTL--NGVPAQPL-------------------------G 324 (450)
T ss_dssp -------CCEEE--ESCSEEETTCEEEEEEEC-----------------------------------------------C
T ss_pred -------CCeEe--cCCeeEeCCCcEEEEEecC----CCCEeEE--CCEEcCCC-------------------------C
Confidence 12222 2234789999999999986 7788999 66544111 1
Q ss_pred ceEEEEEeeecccCceEEEEEEEcccc-c---eeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhccccccccc
Q psy2148 1337 GFVSLDIDYVYPEDQGEYVCRAYNDHG-E---AFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLT 1412 (1884)
Q Consensus 1337 ~~~~L~I~~~~~~d~G~Y~C~a~n~~g-~---~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1412 (1884)
....|.|..+..+|+|.|+|.|.|..| . ...++.|.|..+|.+...
T Consensus 325 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~------------------------------ 374 (450)
T 1z7z_I 325 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDER------------------------------ 374 (450)
T ss_dssp CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCST------------------------------
T ss_pred ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeec------------------------------
Confidence 123699999999999999999997665 3 336678888777654211
Q ss_pred CCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeecc
Q psy2148 1413 EDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYP 1492 (1884)
Q Consensus 1413 ~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~ 1492 (1884)
..| ....+.+|+.++|.|.+. |.|.|.|+|+|+|..+...+ . .+ .++.
T Consensus 375 ----------~~p-------~~~~~~~g~~~~l~C~~~--g~P~p~i~W~~~g~~~~~~g--------~--~~---~v~~ 422 (450)
T 1z7z_I 375 ----------DCP-------GNWTWPENSQQTPMCQAW--GNPLPELKCLKDGTFPLPIG--------E--SV---TVTR 422 (450)
T ss_dssp ----------TSC-------SEEEEETTCEECCCCCCE--EESCCEEEEEETTTEECCTT--------S--CE---ECCG
T ss_pred ----------cCC-------CceeEcCCCeEEEEEecc--cCCCCcEEEEECCcccCCCC--------C--eE---eEeh
Confidence 001 112477899999999986 99999999999998543322 1 12 5788
Q ss_pred CCCeEEEEEEEecCcceEEEEEEEEeC
Q psy2148 1493 EDSGEYLCRATNLYGMDETRAILKTTG 1519 (1884)
Q Consensus 1493 ~d~G~Y~c~a~n~~G~~~~~~~l~V~~ 1519 (1884)
+|+|.|+|.|.|.+|..+.++.|.|.+
T Consensus 423 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 423 DLEGTYLCRARSTQGEVTREVTVNVLS 449 (450)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence 999999999999999999999999964
No 19
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=1.3e-38 Score=393.61 Aligned_cols=375 Identities=23% Similarity=0.336 Sum_probs=279.3
Q ss_pred CCCCeeEeecceeee---ecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeece
Q psy2148 1262 EEPPRFITEIESVTV---QEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGF 1338 (1884)
Q Consensus 1262 ~~~p~~~~~~~~~~v---~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1338 (1884)
..+|.|..+|.+..+ .+|+.+.|.|.+.|. |.+.+.|+|+|..+....+ .+ ....++
T Consensus 3 ~~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~--P~p~i~W~k~g~~l~~~~~------------~~-----~~~~~g- 62 (384)
T 3kld_A 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGN--PKPHIRWKLNGTDVDIGMD------------FR-----YSVVDG- 62 (384)
T ss_dssp CEEEEEEECCCCEEEETTCSCSEEEECCEEEEE--SCCEEEEEETTEECCC----------------C-----EEEETT-
T ss_pred CCCCEEEeCCcceEeecCCCCCeEEEEeEecCC--CCCEEEEEECCEECcCCCC------------cc-----EEEECC-
Confidence 347899999998877 689999999999864 7789999999987754311 11 011223
Q ss_pred EEEEEeee-cccCceEEEEEEEccccceee-eEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCcc
Q psy2148 1339 VSLDIDYV-YPEDQGEYVCRAYNDHGEAFT-KATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDL 1416 (1884)
Q Consensus 1339 ~~L~I~~~-~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1416 (1884)
.|.|.++ +.+|+|.|+|.|.|..|...+ .+.|.+...+.+
T Consensus 63 -~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~------------------------------------- 104 (384)
T 3kld_A 63 -SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENF------------------------------------- 104 (384)
T ss_dssp -EEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCC-------------------------------------
T ss_pred -EEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEeccccc-------------------------------------
Confidence 5777765 889999999999999997543 466666443321
Q ss_pred CCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCe
Q psy2148 1417 YEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSG 1496 (1884)
Q Consensus 1417 ~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G 1496 (1884)
...+.....+.+|+.+.|.|... .+.|.+.+.|++++.++....+......++ .|.|.+++.+|+|
T Consensus 105 -----------~~~~~~~~~v~~G~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G 170 (384)
T 3kld_A 105 -----------KTRTRSTVSVRRGQGMVLLCGPP-PHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVG 170 (384)
T ss_dssp -----------SCCCCCCEEEEETCCEEECCCCC-SEESCEEEEEEETTEECCCSSSEEECTTTC--CEEESSCCGGGCE
T ss_pred -----------ccCCCCceeEEcCCCeEEecCCC-CCCCCeEEEEEECCCCCEeeccEEEEcCCC--cEEEeecCHHHCc
Confidence 01111223478999999999753 356778999999999886555433333333 6999999999999
Q ss_pred EEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCccccccc
Q psy2148 1497 EYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQE 1576 (1884)
Q Consensus 1497 ~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 1576 (1884)
.|+|.|.|..|..... ..+
T Consensus 171 ~Y~C~a~n~~~~~~~~------~~~------------------------------------------------------- 189 (384)
T 3kld_A 171 NYTCVVTNTVTNHKVL------GPP------------------------------------------------------- 189 (384)
T ss_dssp EEEEEEEETTTTEEEE------CCC-------------------------------------------------------
T ss_pred eEEEEEecccccceee------CCc-------------------------------------------------------
Confidence 9999999988753211 100
Q ss_pred CCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCe
Q psy2148 1577 GEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQ 1656 (1884)
Q Consensus 1577 g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~ 1656 (1884)
..+.....+.. ....|......+....+.+|+.
T Consensus 190 ---~~~~v~~~~~~--------------------------------------------~~~~p~~~~~~~~~~~~~~G~~ 222 (384)
T 3kld_A 190 ---TPLILRNDGVM--------------------------------------------GEYEPKIEVQFPETVPAEKGTT 222 (384)
T ss_dssp ---EEEEEEEEEEC--------------------------------------------CCEEEEEEEECCSEEEEETTSC
T ss_pred ---eEEEEccCCcc--------------------------------------------cccCCceeecCCCceEecCCCc
Confidence 00000000000 0000111122334567789999
Q ss_pred EEEEEEEeccCCCeEEEEeC-CeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecccC
Q psy2148 1657 ARFEVEFDGDPLPTIKWFRE-DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQG 1735 (1884)
Q Consensus 1657 ~~l~C~~~g~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 1735 (1884)
+.|.|.+.|.|.|.+.|+|+ +..+.... ......+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 223 v~l~C~~~g~P~p~i~W~k~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~---- 294 (384)
T 3kld_A 223 VKLECFALGNPVPTILWRRADGKPIARKA----RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA---- 294 (384)
T ss_dssp EEEEEEEEEESCCEEEEEETTCCCCCTTC----EECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----
T ss_pred EEEEEEEeecCCCcEEEEeCCCccccccc----eecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec----
Confidence 99999999999999999995 44554321 1224456899999999999999999999999999999999984
Q ss_pred CCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEE
Q psy2148 1736 GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYEC 1815 (1884)
Q Consensus 1736 ~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 1815 (1884)
+|.|...+.+..+..|+.+.|.|.+.|.|.|.|+|+|+|..+..+.++.+. .+ .|.|.++..+|+|.|+|
T Consensus 295 ------~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~-~~---~L~i~~v~~~D~G~Y~C 364 (384)
T 3kld_A 295 ------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE-QG---TLNITIVNLSDAGMYQC 364 (384)
T ss_dssp ------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE-TT---EEEESSCCGGGCEEEEE
T ss_pred ------CCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe-CC---EEEEeecChhhCEEEEE
Confidence 788888889999999999999999999999999999999999888887753 33 89999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEe
Q psy2148 1816 VAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1816 ~a~N~~G~~~~~~~l~V~~ 1834 (1884)
.|.|.+|....++.|.|..
T Consensus 365 ~A~N~~G~~~~~a~L~V~~ 383 (384)
T 3kld_A 365 VAENKHGVIFSSAELSVIA 383 (384)
T ss_dssp EEEETTEEEEEEEEEEEC-
T ss_pred EEEeCCceEEeceEEEEec
Confidence 9999999999999999974
No 20
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=1.6e-38 Score=392.67 Aligned_cols=369 Identities=23% Similarity=0.357 Sum_probs=272.2
Q ss_pred CCCeeeecCCceee---cCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccC-CCCCCeEEE
Q psy2148 915 KAPEFLTTPTDLTL---AESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDV-YLRDSGLYT 990 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v---~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~ 990 (1884)
.+|.|+..|.+..+ .+|+.+.|.|.+. |.|.|.|+|+|||.+|..+..+++...++ .|.|.++ ..+|+|.|+
T Consensus 4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~g--~l~i~~~~~~~D~G~Y~ 79 (384)
T 3kld_A 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVK--GNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQ 79 (384)
T ss_dssp EEEEEEECCCCEEEETTCSCSEEEECCEEE--EESCCEEEEEETTEECCC----CEEEETT--EEEEESCCHHHHCEEEE
T ss_pred CCCEEEeCCcceEeecCCCCCeEEEEeEec--CCCCCEEEEEECCEECcCCCCccEEEECC--EEEEcCCCCcccCEEEE
Confidence 47899999988876 6899999999998 67888999999999997654443333444 4667665 789999999
Q ss_pred EEEEcCCeeEE-EEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCC
Q psy2148 991 CKATNKHGEAT-TSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEA 1069 (1884)
Q Consensus 991 C~a~N~~G~~~-~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 1069 (1884)
|.|.|..|... ..+.|.|...+.. .......+.+.+|
T Consensus 80 C~A~N~~G~~~s~~~~l~v~~~~~~------------------------------------------~~~~~~~~~v~~G 117 (384)
T 3kld_A 80 CIATNSFGTIVSREAKLQFAYLENF------------------------------------------KTRTRSTVSVRRG 117 (384)
T ss_dssp EEEEETTEEEECCCEEEEEEEECCC------------------------------------------SCCCCCCEEEEET
T ss_pred EEEEcCcccEEecceEEEEeccccc------------------------------------------ccCCCCceeEEcC
Confidence 99999999753 4566776533221 1111123567789
Q ss_pred CcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEE---EEEEE
Q psy2148 1070 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK---AKVIC 1146 (1884)
Q Consensus 1070 ~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~---~~l~v 1146 (1884)
+.+.|.|.+. .+.|.+.+.|++++..+..+.+.......+ .|.|.++..+|+|.|+|.|.|..|..... ..+.+
T Consensus 118 ~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v 194 (384)
T 3kld_A 118 QGMVLLCGPP-PHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLIL 194 (384)
T ss_dssp CCEEECCCCC-SEESCEEEEEEETTEECCCSSSEEECTTTC--CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEE
T ss_pred CCeEEecCCC-CCCCCeEEEEEECCCCCEeeccEEEEcCCC--cEEEeecCHHHCceEEEEEecccccceeeCCceEEEE
Confidence 9999999764 245678999999999987665544433333 69999999999999999999998865321 11111
Q ss_pred eeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccccc
Q psy2148 1147 KAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKH 1226 (1884)
Q Consensus 1147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 1226 (1884)
.....
T Consensus 195 ~~~~~--------------------------------------------------------------------------- 199 (384)
T 3kld_A 195 RNDGV--------------------------------------------------------------------------- 199 (384)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred ccCCc---------------------------------------------------------------------------
Confidence 10000
Q ss_pred cccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCee-EeecceeeeecCCcEEEEEEEeecCCCcceEEEecccc
Q psy2148 1227 DIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRF-ITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTA 1305 (1884)
Q Consensus 1227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~ 1305 (1884)
....+|.+ ...+....+.+|+.+.|.|.+.+. |.+.+.|++++.
T Consensus 200 ---------------------------------~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~--P~p~i~W~k~~~ 244 (384)
T 3kld_A 200 ---------------------------------MGEYEPKIEVQFPETVPAEKGTTVKLECFALGN--PVPTILWRRADG 244 (384)
T ss_dssp ---------------------------------CCCEEEEEEEECCSEEEEETTSCEEEEEEEEEE--SCCEEEEEETTC
T ss_pred ---------------------------------ccccCCceeecCCCceEecCCCcEEEEEEEeec--CCCcEEEEeCCC
Confidence 00011222 223567789999999999999865 778999999654
Q ss_pred -cccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCceeeccc
Q psy2148 1306 -FFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQ 1384 (1884)
Q Consensus 1306 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~ 1384 (1884)
.+... .+ .......|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|.+
T Consensus 245 ~~~~~~--------------~~-------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~----- 298 (384)
T 3kld_A 245 KPIARK--------------AR-------RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNW----- 298 (384)
T ss_dssp CCCCTT--------------CE-------ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEE-----
T ss_pred cccccc--------------ce-------ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCcc-----
Confidence 33211 00 0112337999999999999999999999999988899988765543
Q ss_pred CCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeec
Q psy2148 1385 VPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLN 1464 (1884)
Q Consensus 1385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~ 1464 (1884)
...+.+ ..+.+|+.+.|.|.+. |.|.|.|+|+||
T Consensus 299 -------------------------------------------~~~~~~-~~v~~g~~v~l~C~~~--g~P~p~i~W~k~ 332 (384)
T 3kld_A 299 -------------------------------------------VQIIND-IHVAMEESVFWECKAN--GRPKPTYRWLKN 332 (384)
T ss_dssp -------------------------------------------EECCCC-EEECTTCCEEEECEEE--EESCCEEEEEET
T ss_pred -------------------------------------------ccCCCc-eEecCCCCEEEEeECC--ccCCCeEEEEEC
Confidence 333333 3477899999999997 999999999999
Q ss_pred CeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEe
Q psy2148 1465 GKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTT 1518 (1884)
Q Consensus 1465 ~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~ 1518 (1884)
|..|..+.++. ..++ .|.|.++..+|+|.|+|.|.|.+|...+++.|.|.
T Consensus 333 g~~l~~~~~~~--~~~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 333 GDPLLTRDRIQ--IEQG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp TEECCCBTTEE--EETT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CEECCCCccEE--EeCC--EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 99998766654 3444 79999999999999999999999999999999985
No 21
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-37 Score=388.28 Aligned_cols=376 Identities=23% Similarity=0.329 Sum_probs=286.7
Q ss_pred CCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEE
Q psy2148 1261 PEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVS 1340 (1884)
Q Consensus 1261 ~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1340 (1884)
...+..|..+|.++.+.+|++++|.|.+.+ +.|.+.+.|+|++..+..... .+. . ......
T Consensus 18 ~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~-~~p~~~v~W~k~g~~~~~~~~------------~~~---~---~~~~~~ 78 (403)
T 3laf_A 18 GRRSLHFVSEPSDAVTMRGGNVLLNCSAES-DRGVPVIKWKKDGLILALGMD------------DRK---Q---QLPNGS 78 (403)
T ss_dssp -CCSSEEEECCCCEEECTTCCEEECCEEEC-TTCCCEEEEEETTEECCTTSC------------TTE---E---ECTTSC
T ss_pred CceeEEEEeCCCceEEecCCcEEEEEEcCC-CCCCceEEEEECCEECccCCc------------ccE---E---EecCCc
Confidence 455678899999999999999999999986 357788999999987654311 010 0 011124
Q ss_pred EEEeee-----cccCceEEEEEEEccccce--eeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccC
Q psy2148 1341 LDIDYV-----YPEDQGEYVCRAYNDHGEA--FTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTE 1413 (1884)
Q Consensus 1341 L~I~~~-----~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1413 (1884)
|.|.++ +.+|+|.|+|.|.|..+.. ...+.|.|..+|
T Consensus 79 l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~------------------------------------ 122 (403)
T 3laf_A 79 LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPL------------------------------------ 122 (403)
T ss_dssp EEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCC------------------------------------
T ss_pred EEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCC------------------------------------
Confidence 666666 7889999999999654433 233556554433
Q ss_pred CccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccC
Q psy2148 1414 DDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPE 1493 (1884)
Q Consensus 1414 ~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~ 1493 (1884)
.|...+.+ ..+.+|+.+.|.|.+. |.|.+.+.|+|++..+................|.|.++..+
T Consensus 123 ------------~~~~~~~~-~~~~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 187 (403)
T 3laf_A 123 ------------RFLSQTES-ITAFMGDTVLLKCEVI--GDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPG 187 (403)
T ss_dssp ------------EECSCCCC-EEEETTSCEEECCCEE--CSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGG
T ss_pred ------------ccccCCCc-EEEEcCCeEEEEEEEc--ccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccc
Confidence 33222222 3478999999999986 99999999999999885422211111122237999999999
Q ss_pred CCeEEEEEEEecCcceE-EEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCccc
Q psy2148 1494 DSGEYLCRATNLYGMDE-TRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQ 1572 (1884)
Q Consensus 1494 d~G~Y~c~a~n~~G~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 1572 (1884)
|+|.|+|.|.|..|... ..+.|.|...|...
T Consensus 188 d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~------------------------------------------------ 219 (403)
T 3laf_A 188 DSGVYRCSARNPASTRTGNEAEVRILSDPGLH------------------------------------------------ 219 (403)
T ss_dssp GCEEEEEEEECSSCCCBCCCEEEEEECCCCCC------------------------------------------------
T ss_pred cCEEEEEEEEcCCCceeccceeEEEecCCCcc------------------------------------------------
Confidence 99999999999877533 34556654322110
Q ss_pred ccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeec
Q psy2148 1573 KVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAF 1652 (1884)
Q Consensus 1573 ~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~ 1652 (1884)
.++.+...+....+.
T Consensus 220 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 234 (403)
T 3laf_A 220 -----------------------------------------------------------------RQLYFLQRPSNVIAI 234 (403)
T ss_dssp -----------------------------------------------------------------EEEEEEECCCCEEEE
T ss_pred -----------------------------------------------------------------cCceEecCCCceEec
Confidence 001122333445677
Q ss_pred CCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEec
Q psy2148 1653 EQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEK 1732 (1884)
Q Consensus 1653 ~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~ 1732 (1884)
+|+.+.|.|.+.|.|.+.+.|++++..+......... .....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 235 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-- 310 (403)
T 3laf_A 235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSL--LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL-- 310 (403)
T ss_dssp TTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEE--ETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE--
T ss_pred CCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEE--CCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEE--
Confidence 8999999999999999999999999988654432222 234679999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEE
Q psy2148 1733 RQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGA 1812 (1884)
Q Consensus 1733 ~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 1812 (1884)
.+|.+...+....+.+|+.++|.|.+.|.|.|.|+|+|+|..+..+.++.+...+ .|.|.++..+|+|.
T Consensus 311 --------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~ 379 (403)
T 3laf_A 311 --------VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGF 379 (403)
T ss_dssp --------EEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTT---EEEESSCCGGGCEE
T ss_pred --------CCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCc---cEEEeccccccCEE
Confidence 4788988888999999999999999999999999999999999888887776544 79999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1813 YECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1813 Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
|+|.|.|..|..+.++.|.|.+
T Consensus 380 Y~C~a~N~~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 380 YQCVAENEAGNAQSSAQLIVPK 401 (403)
T ss_dssp EEEEEEETTEEEEEEEEEECCC
T ss_pred EEEEEEcCCceEEEEEEEEEeC
Confidence 9999999999999999999976
No 22
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=383.32 Aligned_cols=340 Identities=12% Similarity=0.083 Sum_probs=237.7
Q ss_pred ccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEE
Q psy2148 1434 QDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRA 1513 (1884)
Q Consensus 1434 ~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~ 1513 (1884)
...+.+|+++.|.|.+. |.|.+.|.|++++..+.....+. ....+..+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 57 ~v~V~~G~~v~L~C~v~--g~P~p~i~W~~~~~~l~~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~ 133 (423)
T 3qs7_E 57 AVEVDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFD-LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133 (423)
T ss_dssp EEEECSSCCEEEEEECS--CCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred cEEEecCCcEEEEEEEE--cCCCCeEEEEECCCccCccceec-cccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEE
Confidence 34689999999999986 89999999999998876533221 1122346799999999999999999999999888888
Q ss_pred EEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEEEEEecCCCCe
Q psy2148 1514 ILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPR 1593 (1884)
Q Consensus 1514 ~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~ 1593 (1884)
.|.|..+|. +. ......+..|+.+.|.|.+.|+|.|.
T Consensus 134 ~l~V~~~p~------------------------------------------~~-~~~p~~~~~~~~~~L~C~a~G~P~P~ 170 (423)
T 3qs7_E 134 TVSIRNTLL------------------------------------------YT-LRRPYFRKMENQDALVCISESVPEPI 170 (423)
T ss_dssp EEEEC-----------------------------------------------C-EEEEEEEECSSSSCEEEEEEESSCCE
T ss_pred EEEEecCcc------------------------------------------cc-ccCCcEeccCCceEEEEEEeeecCCe
Confidence 888864332 11 01112245588889999999999999
Q ss_pred EEEEEcCEEeeee---eEEEEeec-cceeeeecceeeEEEEecC---------CCCCCCCeeeecCCceeecCCCeEEEE
Q psy2148 1594 VMWLINGHTIVNE---IVRKITAT-ETTEMEHKGKIQERVVDAS---------EKPAKPPVFTKKIQPCRAFEQDQARFE 1660 (1884)
Q Consensus 1594 v~W~~~g~~i~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~~~~v~~G~~~~l~ 1660 (1884)
|+|++++..+... ....+... ......+.|.|.|.+.+.. +.+..+|.+ .+....+.+|+.+.|.
T Consensus 171 i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~ 248 (423)
T 3qs7_E 171 VEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIR 248 (423)
T ss_dssp EEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEE
T ss_pred EEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEE
Confidence 9999998755321 01111111 1113457788998887542 233334443 3446788999999999
Q ss_pred EEEec-cCCCeEEEEeCCeecCCCCCeEEEE------eCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecc
Q psy2148 1661 VEFDG-DPLPTIKWFREDFPITSSPDFQIHT------FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKR 1733 (1884)
Q Consensus 1661 C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~------~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~ 1733 (1884)
|.+.| .|.|.|+|+|+|..+.....+.... .....+|.|.++..+|+|.|+|.|.|. ...++.|.|..
T Consensus 249 C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~-- 323 (423)
T 3qs7_E 249 CKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE-- 323 (423)
T ss_dssp EEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEES--
T ss_pred EEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEe--
Confidence 99999 7789999999998875543222211 112357999999999999999999997 77888999984
Q ss_pred cCCCCCCCCCeEEecc--CceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCE
Q psy2148 1734 QGGRGGVVPPSFLTTI--SSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSG 1811 (1884)
Q Consensus 1734 ~~~~~~~~~P~~~~~~--~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G 1811 (1884)
+|.+...+ ....+.+|+++.|.|.+.|.|.|.|+|+|+|..|..+.+.. . ..+.+.+.....+|+|
T Consensus 324 --------~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~--~--~~~~~~~~~~~~~D~G 391 (423)
T 3qs7_E 324 --------KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--D--NGYSISKFCNHKHQPG 391 (423)
T ss_dssp --------SCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC--S--SSSEEEEECCCTTCCS
T ss_pred --------CCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc--c--CCcEEEEEecccccCE
Confidence 66666544 45667889999999999999999999999999986553210 0 1112333556779999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEEecCCC
Q psy2148 1812 AYECVAMNNAGEARCEAELVVQSKKAP 1838 (1884)
Q Consensus 1812 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 1838 (1884)
.|+|.|.|..|.++.+++|.|.++|.+
T Consensus 392 ~YtC~A~N~~G~~~~s~~L~v~~~p~~ 418 (423)
T 3qs7_E 392 EYIFHAENDDAQFTKMFTLNIRSGTKH 418 (423)
T ss_dssp CEEEEEEETTEEEEEEEEEC-------
T ss_pred EEEEEEEcCCceEEEEEEEEEecCCcc
Confidence 999999999999999999999987653
No 23
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=380.50 Aligned_cols=365 Identities=13% Similarity=0.154 Sum_probs=240.3
Q ss_pred eeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCe
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHG 998 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 998 (1884)
++..+.++.|.+|+++.|.|.+. +.|.+.|+|++++..+.....+.. ...+...|.|.+++.+|+|.|+|.|.|..|
T Consensus 51 ~~~~~~~v~V~~G~~v~L~C~v~--g~P~p~i~W~~~~~~l~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g 127 (423)
T 3qs7_E 51 TVYEAAAVEVDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEAT 127 (423)
T ss_dssp -----CEEEECSSCCEEEEEECS--CCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--C
T ss_pred ceeccccEEEecCCcEEEEEEEE--cCCCCeEEEEECCCccCccceecc-ccceEEEEEEeecCcccCEEEEEEEEcCCC
Confidence 34444589999999999999998 688999999999988865443321 122345799999999999999999999999
Q ss_pred eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEE
Q psy2148 999 EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRL 1078 (1884)
Q Consensus 999 ~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v 1078 (1884)
..+..+.|.|..+|.+. + ..|.+ +..|+.+.|.|.+
T Consensus 128 ~~~~~~~l~V~~~p~~~--~---------------------------------~~p~~---------~~~~~~~~L~C~a 163 (423)
T 3qs7_E 128 NYTILFTVSIRNTLLYT--L---------------------------------RRPYF---------RKMENQDALVCIS 163 (423)
T ss_dssp EEEEEEEEEEC-----C--E---------------------------------EEEEE---------EECSSSSCEEEEE
T ss_pred cEEEEEEEEEecCcccc--c---------------------------------cCCcE---------eccCCceEEEEEE
Confidence 99999999997433211 0 11211 2347778899999
Q ss_pred eeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEE-cccCcCCcEEEEEEEEcCCeeeEEE-EEEEEeecccccccc
Q psy2148 1079 EPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDM-DYVYARDSGEYICRATNKWGTAMTK-AKVICKAKHDIVTES 1156 (1884)
Q Consensus 1079 ~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i-~~~~~~d~G~Y~C~a~n~~G~~~~~-~~l~v~~~~~~~~~~ 1156 (1884)
. |.|.|.|.|+|++..+...... . ..+ .+.. .-+...|+|.|+|.|.|..|..... +.|.|..++.
T Consensus 164 ~--G~P~P~i~W~k~~~~~~~~~~~-~--~~~--~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~----- 231 (423)
T 3qs7_E 164 E--SVPEPIVEWVLCDSQGESCKEE-S--PAV--VKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ----- 231 (423)
T ss_dssp E--ESSCCEEEEEEC----------------C--EEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCC-----
T ss_pred e--eecCCeEEEEECCCCCcccccc-c--ccc--ccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCc-----
Confidence 7 8899999999998865421100 0 000 0111 1115789999999999999987652 4444321111
Q ss_pred ccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccccccccccccCCC
Q psy2148 1157 QLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQLPD 1236 (1884)
Q Consensus 1157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 (1884)
T Consensus 232 -------------------------------------------------------------------------------- 231 (423)
T 3qs7_E 232 -------------------------------------------------------------------------------- 231 (423)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccce
Q psy2148 1237 SMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTA 1316 (1884)
Q Consensus 1237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~ 1316 (1884)
+ .+.+..+.+|+.+.|.|.+.+ ..|.+.+.|+|++..+........
T Consensus 232 ------------------------------~--~~~~~~v~~G~~v~L~C~~~g-~~p~p~i~W~k~g~~l~~~~~~~~- 277 (423)
T 3qs7_E 232 ------------------------------T--TLPQLFLKVGEPLWIRCKAVH-VNHGFGLTWELENKALEEGNYFEM- 277 (423)
T ss_dssp ------------------------------S--STTEEEEETTSCEEEEEEEEE-SSSCCCEEEEESSSBCCGGGEEEE-
T ss_pred ------------------------------c--CCCceEEeCCCeEEEEEEEEc-CCCCcEEEEEECCEEccccceeec-
Confidence 0 112567899999999999986 357789999999987644311000
Q ss_pred EEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCceeecccCCcchhhhHHHH
Q psy2148 1317 FLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLKTEALI 1396 (1884)
Q Consensus 1317 ~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~ 1396 (1884)
.. ...........+|.|.+++.+|+|.|+|.|.|. ...++.|.|..+|.+.+.
T Consensus 278 --------~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~-------------- 330 (423)
T 3qs7_E 278 --------ST--YSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINAT-------------- 330 (423)
T ss_dssp --------EE--EETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC--------------
T ss_pred --------cc--ccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEc--------------
Confidence 00 000001223347999999999999999999997 667788888766654221
Q ss_pred HHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCcee
Q psy2148 1397 QMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNP 1476 (1884)
Q Consensus 1397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~ 1476 (1884)
.......+.+|+.+.|.|.+. |.|.|.|+|+|+|..|..+.+..
T Consensus 331 ---------------------------------~~~~~~~v~~G~~v~l~C~~~--g~P~p~i~W~k~g~~l~~~~~~~- 374 (423)
T 3qs7_E 331 ---------------------------------NSSEDYEIDQYEEFCFSVRFK--AYPQIRCTWTFSRKSFPCEQKGL- 374 (423)
T ss_dssp ------------------------------------CEECCCTTCCCCEEEEEE--EESCCEEEEEETTEEEECBCCBC-
T ss_pred ---------------------------------CCCccEEecCCCeEEEEEEEE--EcCCCeEEEEECCEECCCccccc-
Confidence 001223478899999999997 99999999999999996543210
Q ss_pred eeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCCc
Q psy2148 1477 IYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPG 1522 (1884)
Q Consensus 1477 ~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~ 1522 (1884)
.++. .+.+.....+|+|.|+|.|.|..|....++.|.|.+.|.
T Consensus 375 --~~~~-~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~ 417 (423)
T 3qs7_E 375 --DNGY-SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTK 417 (423)
T ss_dssp --SSSS-EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC------
T ss_pred --cCCc-EEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCc
Confidence 1111 222355677999999999999999999999999988764
No 24
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=5.5e-37 Score=380.57 Aligned_cols=366 Identities=22% Similarity=0.312 Sum_probs=281.7
Q ss_pred CCCeeEeecceeee---ecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceE
Q psy2148 1263 EPPRFITEIESVTV---QEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFV 1339 (1884)
Q Consensus 1263 ~~p~~~~~~~~~~v---~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1339 (1884)
.+|.|...|.+..+ .+|+.++|.|.+.+. |.+.+.|+|++..+..... .+. ...+ .
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~--p~~~v~W~k~g~~~~~~~~------------~~~-----~~~~--~ 61 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARAN--PPATYRWKMNGTELKMGPD------------SRY-----RLVA--G 61 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEE--SCCEEEEEETTEECCCSTT------------SSE-----EEET--T
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEecCC--CCCEEEEEECCEECCcCCC------------ccE-----EeeC--C
Confidence 47899999998877 789999999999864 6789999999987654311 111 0112 2
Q ss_pred EEEEeeecc-cCceEEEEEEEccccceee-eEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccC
Q psy2148 1340 SLDIDYVYP-EDQGEYVCRAYNDHGEAFT-KATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLY 1417 (1884)
Q Consensus 1340 ~L~I~~~~~-~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1417 (1884)
.|.|.++.. +|+|.|+|.|.|..|...+ .+.|.|..+|.+..
T Consensus 62 ~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~------------------------------------ 105 (382)
T 1cs6_A 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSA------------------------------------ 105 (382)
T ss_dssp EEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCS------------------------------------
T ss_pred eEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccc------------------------------------
Confidence 699999997 9999999999999987643 47777765443210
Q ss_pred CcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecC--CCCCceeeeeCceEEEEEeeeccCCC
Q psy2148 1418 EPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLP--HKNRFNPIYDFGYVAMNFGWVYPEDS 1495 (1884)
Q Consensus 1418 ~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~--~~~~~~~~~~~~~~~L~i~~~~~~d~ 1495 (1884)
.......+.+|+.+.|.|.+. .+.|.+.+.|++++..+. .+.++. .......|.|.+++.+|+
T Consensus 106 ------------~~~~~~~v~~G~~v~l~C~~~-~~~p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~ 170 (382)
T 1cs6_A 106 ------------EERDPVKITEGWGVMFTCSPP-PHYPALSYRWLLNEFPNFIPADGRRF--VSQTTGNLYIAKTEASDL 170 (382)
T ss_dssp ------------SCCCCEEEETTSCEEECCCCC-SEESCCEEEEEESSTTCBCCCCSSEE--ECTTTCCEEESSCCGGGC
T ss_pred ------------cCCCceEEecCCcEEEEeCCC-CCCCCcEEEEEECCCccccccCceEE--EecCceEEEEEeeCcccC
Confidence 111223478999999999864 477889999999997753 223322 222234799999999999
Q ss_pred eEEEEEEEecCcceEEEE-----EEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCc
Q psy2148 1496 GEYLCRATNLYGMDETRA-----ILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPE 1570 (1884)
Q Consensus 1496 G~Y~c~a~n~~G~~~~~~-----~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 1570 (1884)
|.|+|.|.|..|...... .|.|...
T Consensus 171 G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~-------------------------------------------------- 200 (382)
T 1cs6_A 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAE-------------------------------------------------- 200 (382)
T ss_dssp EEEEEEEEEEETTEEEEEECCCEEEEEESC--------------------------------------------------
T ss_pred eeEEEEEEEccccccceeEccceeeccchh--------------------------------------------------
Confidence 999999999876433321 1221100
Q ss_pred ccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeee-cCCce
Q psy2148 1571 AQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTK-KIQPC 1649 (1884)
Q Consensus 1571 ~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~ 1649 (1884)
.....+|.+.. .+...
T Consensus 201 ---------------------------------------------------------------~~~~~~P~~~~~~~~~~ 217 (382)
T 1cs6_A 201 ---------------------------------------------------------------DARQYAPSIKAKFPADT 217 (382)
T ss_dssp ---------------------------------------------------------------CCCCEEEEEEECCCSEE
T ss_pred ---------------------------------------------------------------hcccCCCceeccCCCce
Confidence 00001122221 23456
Q ss_pred eecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEE
Q psy2148 1650 RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 1729 (1884)
Q Consensus 1650 ~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V 1729 (1884)
.+.+|+.+.|.|.+.|.|.+.+.|++++..+... .......|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 218 ~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 291 (382)
T 1cs6_A 218 YALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 291 (382)
T ss_dssp EEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEeCCCeEEEEEEEccCCCCEEEEEECCcccccE------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 7889999999999999999999999998765431 1234568999999999999999999999999999999999
Q ss_pred EecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCC
Q psy2148 1730 EEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVED 1809 (1884)
Q Consensus 1730 ~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d 1809 (1884)
.. +|.+...+....+..|+.++|.|.+.|.|.|.|+|+|+|..+..+.++.+. ++ .|.|.++..+|
T Consensus 292 ~~----------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~-~~---~L~i~~v~~~d 357 (382)
T 1cs6_A 292 HA----------QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS-GG---ELRFSKLVLED 357 (382)
T ss_dssp EE----------EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE-TT---EEEESSCCGGG
T ss_pred ec----------CCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE-CC---EEEECcCCccc
Confidence 84 788888888899999999999999999999999999999999888887764 22 89999999999
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1810 SGAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1810 ~G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
+|.|+|.|.|..|....++.|.|+
T Consensus 358 ~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 358 SGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CEEEEEEEEeCCCeEEEEEEEEEe
Confidence 999999999999999999999986
No 25
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=5.4e-36 Score=373.89 Aligned_cols=377 Identities=19% Similarity=0.240 Sum_probs=281.7
Q ss_pred CCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEE
Q psy2148 1261 PEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVS 1340 (1884)
Q Consensus 1261 ~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1340 (1884)
...||.|...+.++.+.+|+.++|.|.+.+ +.|.+.+.|+|++..+..... + ........+
T Consensus 3 v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~-------------~-----~~~~~~~~~ 63 (395)
T 1bih_A 3 VDKYPVLKDQPAEVLFRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEH-------------N-----AALRKDEGS 63 (395)
T ss_dssp --CCCEECCCCSEEEEETTSCEEECCCEES-CCSSCEEEEEESSSBCCTTTT-------------T-----EEECTTSCC
T ss_pred cCCCCEeecCCCceEEeCCCEEEEEEEEec-CCCCceEEEEECCcCcccccc-------------e-----EEEecCCce
Confidence 356899999999999999999999999986 468899999999987765421 0 001123347
Q ss_pred EEEeeecccCceEEEEEEEccccceee-eEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCc
Q psy2148 1341 LDIDYVYPEDQGEYVCRAYNDHGEAFT-KATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEP 1419 (1884)
Q Consensus 1341 L~I~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1419 (1884)
|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|...+.
T Consensus 64 L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~----------------------------------------- 102 (395)
T 1bih_A 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIA----------------------------------------- 102 (395)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEEC-----------------------------------------
T ss_pred EEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeec-----------------------------------------
Confidence 999999999999999999999887653 35666543221
Q ss_pred ccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCe---ecCC----CCCceeeeeCceEEEEEeeecc
Q psy2148 1420 EKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGK---PLPH----KNRFNPIYDFGYVAMNFGWVYP 1492 (1884)
Q Consensus 1420 ~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~---~l~~----~~~~~~~~~~~~~~L~i~~~~~ 1492 (1884)
|.+. +. ...+.+|+.++|.|.+. .|.|.+.|.|++++. +... ..++. ...++ .|.|.+++.
T Consensus 103 -----p~~~--~~-~~~~~~G~~v~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~--~L~i~~v~~ 170 (395)
T 1bih_A 103 -----SPAK--TH-EKTPIEGRPFQLDCVLP-NAYPKPLITWKKRLSGADPNADVTDFDRRIT-AGPDG--NLYFTIVTK 170 (395)
T ss_dssp -----CCCE--EE-EECCBTTEEEEECCCCC-EEESCCEEEEEEEETTSCGGGCCCCCCTTEE-ECTTS--CEEEEEECG
T ss_pred -----CCcC--Cc-ceeeeeCCcEEEEecCC-CCCCCCeEEEEecCCCcCcccccccccccEE-EcCCC--cEEEEEEee
Confidence 1111 11 22467999999999963 489999999999862 2211 22222 22333 689999999
Q ss_pred CCCe---EEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCC
Q psy2148 1493 EDSG---EYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQP 1569 (1884)
Q Consensus 1493 ~d~G---~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 1569 (1884)
+|+| .|+|.|.|..|.........+...- .++.
T Consensus 171 ~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~---------------------------------------~~~~----- 206 (395)
T 1bih_A 171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGV---------------------------------------TKDN----- 206 (395)
T ss_dssp GGCCSSEEEEEEEECTTCSSCEEEEEEEECCC---------------------------------------BCCS-----
T ss_pred ccCCCceEEEEEEEecccceEEEeeeEEeccc---------------------------------------cccc-----
Confidence 9999 9999999998875544332221000 0000
Q ss_pred cccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCce
Q psy2148 1570 EAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPC 1649 (1884)
Q Consensus 1570 ~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 1649 (1884)
.+ .....+|.+ .+...
T Consensus 207 -------------------~~-------------------------------------------~~~~~~p~~--~~~~~ 222 (395)
T 1bih_A 207 -------------------SG-------------------------------------------YKGEPVPQY--VSKDM 222 (395)
T ss_dssp -------------------SC-------------------------------------------CCCCCEEEE--ECCSE
T ss_pred -------------------cc-------------------------------------------ccCCcCcee--cCCce
Confidence 00 000011222 23456
Q ss_pred eecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEE--eCceeEEEEcccccCCCeEEEEEEEeCCceEEE-EEE
Q psy2148 1650 RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHT--FSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SAN 1726 (1884)
Q Consensus 1650 ~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~-~~~ 1726 (1884)
.+.+|+.+.|.|.+.|.|.+.++|+|+|..+......++.. ......|.|.++..+|+|.|+|.|.|..|.... .+.
T Consensus 223 ~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~ 302 (395)
T 1bih_A 223 MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK 302 (395)
T ss_dssp EEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEE
T ss_pred EEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEE
Confidence 78899999999999999999999999999887654433332 223348999999999999999999999998665 899
Q ss_pred EEEEecccCCCCCCCCCeEEeccCc-eEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccC
Q psy2148 1727 LVVEEKRQGGRGGVVPPSFLTTISS-AVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEA 1805 (1884)
Q Consensus 1727 l~V~~~~~~~~~~~~~P~~~~~~~~-~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~ 1805 (1884)
|.|.. +|.|...+.. ..+.+|+.++|.|.+.|.|.|.|.|+|+|..+..+ ++.+.. + .|.|.++
T Consensus 303 l~V~~----------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~-~---~L~i~~~ 367 (395)
T 1bih_A 303 LTVVS----------APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTD-S---GLVIKGV 367 (395)
T ss_dssp EEEEE----------EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEET-T---EEEESSC
T ss_pred EEEEc----------CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEEC-C---EEEEeeC
Confidence 99984 7888888777 78899999999999999999999999999998655 665532 2 8999999
Q ss_pred CCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2148 1806 VVEDSGAYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1806 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
..+|+|.|+|.|.|..|....++.|.|
T Consensus 368 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 368 KNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp CSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcccCEEEEEEEEccCCCceEEEEEEE
Confidence 999999999999999999999999987
No 26
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=3.6e-36 Score=376.68 Aligned_cols=372 Identities=22% Similarity=0.315 Sum_probs=280.7
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCC--CcEEEEeeCCeEEEEEccC-----CCCCC
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAG--SRIKTINDFGFVILEINDV-----YLRDS 986 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~I~~~-----~~~D~ 986 (1884)
.....|...|.++.+.+|+.++|.|.+.+ +.|.+.|+|+|+|..+... .++....++ .|.|.++ +.+|+
T Consensus 19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~~~D~ 94 (403)
T 3laf_A 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAES-DRGVPVIKWKKDGLILALGMDDRKQQLPNG---SLLIQNILHSRHHKPDE 94 (403)
T ss_dssp CCSSEEEECCCCEEECTTCCEEECCEEEC-TTCCCEEEEEETTEECCTTSCTTEEECTTS---CEEECSCCCBTTBCSSC
T ss_pred ceeEEEEeCCCceEEecCCcEEEEEEcCC-CCCCceEEEEECCEECccCCcccEEEecCC---cEEEeeeeccCCCCCcc
Confidence 45678889999999999999999999984 4688899999999999653 455444443 4777776 67899
Q ss_pred eEEEEEEEcCCeeE--EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCc
Q psy2148 987 GLYTCKATNKHGEA--TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNL 1064 (1884)
Q Consensus 987 G~Y~C~a~N~~G~~--~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 1064 (1884)
|.|+|.|.|..+.. +..+.|.|..+ |.+..... .+
T Consensus 95 G~Y~C~~~~~~~~~~~s~~~~l~v~~p------------------------------------------~~~~~~~~-~~ 131 (403)
T 3laf_A 95 GLYQCEASLGDSGSIISRTAKVMVAGP------------------------------------------LRFLSQTE-SI 131 (403)
T ss_dssp EEEEEEEECGGGCEEECCCEEEEECCC------------------------------------------CEECSCCC-CE
T ss_pred eEEEEEEEeCCCccEEEEEEEEEecCC------------------------------------------CccccCCC-cE
Confidence 99999999764433 34456666532 23322222 36
Q ss_pred CcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccC---CCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeE-E
Q psy2148 1065 DVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFAT---GSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAM-T 1140 (1884)
Q Consensus 1065 ~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~-~ 1140 (1884)
.+.+|+.+.|.|.+. +.|.+.+.|+|+|..+.. ..+... ...+ .|.|.++..+|+|.|+|.|.|..|... .
T Consensus 132 ~~~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~--~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~ 206 (403)
T 3laf_A 132 TAFMGDTVLLKCEVI--GDPMPTIHWQKNQQDLNPIPGDSRVVV-LPSG--ALQISRLQPGDSGVYRCSARNPASTRTGN 206 (403)
T ss_dssp EEETTSCEEECCCEE--CSSCCEEEEEESSSBCCCCTTCCSEEE-CTTS--CEEECSCCGGGCEEEEEEEECSSCCCBCC
T ss_pred EEEcCCeEEEEEEEc--ccCCCeEEEEECCEeccccCCceEEEE-cCCc--eEEEcccccccCEEEEEEEEcCCCceecc
Confidence 677999999999997 788889999999998843 223222 2222 699999999999999999999988643 4
Q ss_pred EEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccc
Q psy2148 1141 KAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANES 1220 (1884)
Q Consensus 1141 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 1220 (1884)
.+.+.|...+.+
T Consensus 207 ~~~l~v~~~p~~-------------------------------------------------------------------- 218 (403)
T 3laf_A 207 EAEVRILSDPGL-------------------------------------------------------------------- 218 (403)
T ss_dssp CEEEEEECCCCC--------------------------------------------------------------------
T ss_pred ceeEEEecCCCc--------------------------------------------------------------------
Confidence 466666543221
Q ss_pred cccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEE
Q psy2148 1221 TELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVEC 1300 (1884)
Q Consensus 1221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W 1300 (1884)
..++.|...+....+.+|+.++|.|.+.+. |.+.+.|
T Consensus 219 -----------------------------------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~~~W 255 (403)
T 3laf_A 219 -----------------------------------------HRQLYFLQRPSNVIAIEGKDAVLECCVSGY--PPPSFTW 255 (403)
T ss_dssp -----------------------------------------CEEEEEEECCCCEEEETTSCEEECCEEEEE--SCCEEEE
T ss_pred -----------------------------------------ccCceEecCCCceEecCCCcEEEEEEcCCC--CCCeEEE
Confidence 012334555667789999999999999864 6679999
Q ss_pred ecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCcee
Q psy2148 1301 SLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQ 1380 (1884)
Q Consensus 1301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 1380 (1884)
++++..+..... + ....+...|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.+
T Consensus 256 ~~~~~~~~~~~~-------------~------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~- 315 (403)
T 3laf_A 256 LRGEEVIQLRSK-------------K------YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWF- 315 (403)
T ss_dssp EETTEECCCSSS-------------S------EEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEE-
T ss_pred EECCeeccCCCc-------------e------EEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcE-
Confidence 999876543311 0 01112347999999999999999999999999888899998766543
Q ss_pred ecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEE
Q psy2148 1381 LQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVE 1460 (1884)
Q Consensus 1381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~ 1460 (1884)
...+.. ..+.+|+.+.|.|.+. |.|.|.|.
T Consensus 316 -----------------------------------------------~~~~~~-~~~~~g~~v~l~C~~~--g~p~p~v~ 345 (403)
T 3laf_A 316 -----------------------------------------------LNHPSN-LYAYESMDIEFECAVS--GKPVPTVN 345 (403)
T ss_dssp -----------------------------------------------EECCCC-EECCTTCCEEECCEEE--EESCCEEE
T ss_pred -----------------------------------------------eecCcc-eEEecCCeEEEEEEEe--eccCCEEE
Confidence 222222 2477899999999997 99999999
Q ss_pred EeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCC
Q psy2148 1461 WFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKP 1521 (1884)
Q Consensus 1461 W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p 1521 (1884)
|+++|..+..+.++.+. .+ ..|.|.++..+|+|.|+|.|.|..|....++.|.|.++|
T Consensus 346 W~~~g~~~~~~~~~~~~-~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~ 403 (403)
T 3laf_A 346 WMKNGDVVIPSDYFQIV-GG--SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA 403 (403)
T ss_dssp EEETTEECCCSSSEEEE-TT--TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred EEECCEECCCCCcEEEe-cC--ccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence 99999999876665532 22 369999999999999999999999999999999997653
No 27
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=3.8e-36 Score=376.75 Aligned_cols=377 Identities=19% Similarity=0.279 Sum_probs=281.2
Q ss_pred CCCCCeeEee-cceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceE
Q psy2148 1261 PEEPPRFITE-IESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFV 1339 (1884)
Q Consensus 1261 ~~~~p~~~~~-~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1339 (1884)
...||.|... +.+..+.+|+.++|.|.+.+ .|.+.+.|+|++..+....+. + .......+
T Consensus 13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g--~p~~~v~W~k~g~~l~~~~~~------------~---~~~~~~~~-- 73 (404)
T 3p3y_A 13 LTQPPTITKQSAKDHIVDPRDNILIECEAKG--NPAPSFHWTRNSRFFNIAKDP------------R---VSMRRRSG-- 73 (404)
T ss_dssp CCCCCCEEEECCTTCEECSSSCCCCCEEECC--SSCCEEEEEETTEECCGGGCS------------S---CBCCSSSC--
T ss_pred ccCCCcccccCCccEEEcCCCCEEEEEEecC--CCCCeEEEEECCEEeeeecCC------------c---ceEecCCc--
Confidence 3567888765 77889999999999999875 578899999999876543211 1 01111122
Q ss_pred EEEEe----eecccCceEEEEEEEcccccee-eeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCC
Q psy2148 1340 SLDID----YVYPEDQGEYVCRAYNDHGEAF-TKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTED 1414 (1884)
Q Consensus 1340 ~L~I~----~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1414 (1884)
+|.|. +++.+|+|.|+|.|.|..|... ..+.|.|..+|...
T Consensus 74 ~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~---------------------------------- 119 (404)
T 3p3y_A 74 TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWP---------------------------------- 119 (404)
T ss_dssp CCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCC----------------------------------
T ss_pred eEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccc----------------------------------
Confidence 34443 8899999999999999998764 55778887655421
Q ss_pred ccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCC
Q psy2148 1415 DLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPED 1494 (1884)
Q Consensus 1415 ~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d 1494 (1884)
........+.+|+.++|.|.+. .|.|.+.+.|++++..............++ .|.|.++..+|
T Consensus 120 --------------~~~~~~~~v~~G~~v~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~l~i~~v~~~d 182 (404)
T 3p3y_A 120 --------------KENLDPVVVQEGAPLTLQCNPP-PGLPSPVIFWMSSSMEPITQDKRVSQGHNG--DLYFSNVMLQD 182 (404)
T ss_dssp --------------CCCCCCEEEETTSCEEECCCCC-CCSSCCEEEEECTTSCBCCCCSSEEECTTS--CEEESSCCSGG
T ss_pred --------------cCCCCCeEEccCCcEEEEeCCC-CCCCCCeEEEeCCCccccCCCCcEEEcCCC--cEEEEeeeecc
Confidence 0111113478999999999983 489999999999885544333322233333 58999999999
Q ss_pred -CeEEEEEEEecCcceEEE---EEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCc
Q psy2148 1495 -SGEYLCRATNLYGMDETR---AILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPE 1570 (1884)
Q Consensus 1495 -~G~Y~c~a~n~~G~~~~~---~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 1570 (1884)
.|.|+|.|.|..|..... ..|.|...+.. ..
T Consensus 183 ~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~-----------------------------------~~---------- 217 (404)
T 3p3y_A 183 MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV-----------------------------------AE---------- 217 (404)
T ss_dssp GSSCBEEEEECTTTCCEEECCCBCEEEECCSCC-----------------------------------CC----------
T ss_pred CCcceEEEEEeccccceeccCceeEEEeccCCc-----------------------------------cc----------
Confidence 599999999988754322 33333221110 00
Q ss_pred ccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeec---CC
Q psy2148 1571 AQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKK---IQ 1647 (1884)
Q Consensus 1571 ~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~ 1647 (1884)
.+|.+... ..
T Consensus 218 -------------------------------------------------------------------~~p~~~~~~~~~~ 230 (404)
T 3p3y_A 218 -------------------------------------------------------------------RTPSFMYPQGTAS 230 (404)
T ss_dssp -------------------------------------------------------------------CCCCBSSSCSSEE
T ss_pred -------------------------------------------------------------------cCCccccccCCCC
Confidence 11111111 12
Q ss_pred ceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEE
Q psy2148 1648 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 1727 (1884)
Q Consensus 1648 ~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 1727 (1884)
...+.+|+.+.|.|.+.|.|.+.++|+++|..+..... ......+.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 307 (404)
T 3p3y_A 231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA---KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISV 307 (404)
T ss_dssp EEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTE---EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred CceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcc---cccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEE
Confidence 34577899999999999999999999999998765432 233445789999999999999999999999999999999
Q ss_pred EEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCC-eEEeecCCeEEEEEccCC
Q psy2148 1728 VVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIR-YKTLEEDNLFTLLIIEAV 1806 (1884)
Q Consensus 1728 ~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~-~~~~~~~~~~~L~i~~~~ 1806 (1884)
.|.. +|.+...+.+..+.+|+.++|.|.+.|.|.|.|+|+|+|..+..... ......+. .|.|.++.
T Consensus 308 ~V~~----------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~ 375 (404)
T 3p3y_A 308 RVKA----------APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQ 375 (404)
T ss_dssp EEEE----------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETT--EEEESSCC
T ss_pred EEeC----------CCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCC--EEEEeecC
Confidence 9984 78888888999999999999999999999999999999999976531 11222232 89999999
Q ss_pred CCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1807 VEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1807 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
.+|+|.|+|.|.|..|....++.|.|.+
T Consensus 376 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 376 ISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp SSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred HHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 9999999999999999999999999975
No 28
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=1.7e-36 Score=376.04 Aligned_cols=364 Identities=24% Similarity=0.335 Sum_probs=275.5
Q ss_pred CCCeeeecCCceee---cCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCC--CcEEEEeeCCeEEEEEccCCC-CCCeE
Q psy2148 915 KAPEFLTTPTDLTL---AESTLAHFECRLTPTNDPSMTVEWFHNGKALSAG--SRIKTINDFGFVILEINDVYL-RDSGL 988 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v---~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~I~~~~~-~D~G~ 988 (1884)
.+|.|...|.+..+ .+|+.++|.|.+. +.|.+.|+|+|||..|... .++.+. ++ .|.|.++.. +|+|.
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~--g~p~~~v~W~k~g~~~~~~~~~~~~~~--~~--~L~i~~~~~~~D~G~ 76 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRLV--AG--DLVISNPVKAKDAGS 76 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEE--EESCCEEEEEETTEECCCSTTSSEEEE--TT--EEEEESCCHHHHCEE
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEec--CCCCCEEEEEECCEECCcCCCccEEee--CC--eEEEecccccccCEE
Confidence 47999999999887 7899999999998 5688899999999999754 455442 33 699999997 99999
Q ss_pred EEEEEEcCCeeEE-EEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcC
Q psy2148 989 YTCKATNKHGEAT-TSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVP 1067 (1884)
Q Consensus 989 Y~C~a~N~~G~~~-~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 1067 (1884)
|+|.|.|..|... ..+.|.|...+.+. ......+.+.
T Consensus 77 Y~C~a~n~~g~~~s~~~~l~v~~~~~~~------------------------------------------~~~~~~~~v~ 114 (382)
T 1cs6_A 77 YQCVATNARGTVVSREASLRFGFLQEFS------------------------------------------AEERDPVKIT 114 (382)
T ss_dssp EEEEEEETTEEEECCCEEEEEEEECCCC------------------------------------------SSCCCCEEEE
T ss_pred EEEEEEcCCcEEEecceEEEeecccccc------------------------------------------ccCCCceEEe
Confidence 9999999999764 35777776543211 1111235677
Q ss_pred CCCcEEEEEEEeeCCCCCcEEEEEECCEecc--CCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEE----
Q psy2148 1068 EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFA--TGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK---- 1141 (1884)
Q Consensus 1068 ~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~---- 1141 (1884)
+|+.+.|.|.+. .+.|.+.+.|+|++..+. .+.+...... ...|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 115 ~G~~v~l~C~~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~ 191 (382)
T 1cs6_A 115 EGWGVMFTCSPP-PHYPALSYRWLLNEFPNFIPADGRRFVSQT--TGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSK 191 (382)
T ss_dssp TTSCEEECCCCC-SEESCCEEEEEESSTTCBCCCCSSEEECTT--TCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECC
T ss_pred cCCcEEEEeCCC-CCCCCcEEEEEECCCccccccCceEEEecC--ceEEEEEeeCcccCeeEEEEEEEccccccceeEcc
Confidence 999999999864 356889999999997753 3333332222 2379999999999999999999987543322
Q ss_pred -EEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccc
Q psy2148 1142 -AKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANES 1220 (1884)
Q Consensus 1142 -~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 1220 (1884)
+.|.+...
T Consensus 192 ~~~l~v~~~----------------------------------------------------------------------- 200 (382)
T 1cs6_A 192 FSQLSLAAE----------------------------------------------------------------------- 200 (382)
T ss_dssp CEEEEEESC-----------------------------------------------------------------------
T ss_pred ceeeccchh-----------------------------------------------------------------------
Confidence 22222210
Q ss_pred cccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEee-cceeeeecCCcEEEEEEEeecCCCcceEE
Q psy2148 1221 TELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITE-IESVTVQEAEPVRFETRVEPRVDPRLRVE 1299 (1884)
Q Consensus 1221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~l~c~v~~~~~p~~~~~ 1299 (1884)
.....+|.+... +....+.+|+.++|.|.+.+. |.+.+.
T Consensus 201 --------------------------------------~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~--p~~~i~ 240 (382)
T 1cs6_A 201 --------------------------------------DARQYAPSIKAKFPADTYALTGQMVTLECFAFGN--PVPQIK 240 (382)
T ss_dssp --------------------------------------CCCCEEEEEEECCCSEEEEETTCCEEEECEEEEE--SCCEEE
T ss_pred --------------------------------------hcccCCCceeccCCCceEEeCCCeEEEEEEEccC--CCCEEE
Confidence 000112334332 457789999999999999864 677899
Q ss_pred EecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCce
Q psy2148 1300 CSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTI 1379 (1884)
Q Consensus 1300 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 1379 (1884)
|++++..+... .......|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+
T Consensus 241 W~~~~~~~~~~-----------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 297 (382)
T 1cs6_A 241 WRKLDGSQTSK-----------------------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDW 297 (382)
T ss_dssp EEECCSCCSCC-----------------------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred EEECCcccccE-----------------------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCc
Confidence 99988754321 1123347999999999999999999999999888889988766543
Q ss_pred eecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeE
Q psy2148 1380 QLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKV 1459 (1884)
Q Consensus 1380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i 1459 (1884)
...+.+ ..+.+|+.++|.|.+. |.|.|.|
T Consensus 298 ------------------------------------------------~~~~~~-~~~~~g~~~~l~C~~~--g~p~p~v 326 (382)
T 1cs6_A 298 ------------------------------------------------LDVITD-TEADIGSDLRWSCVAS--GKPRPAV 326 (382)
T ss_dssp ------------------------------------------------EECCCC-EEEETTCCEEEECEEE--EESCCEE
T ss_pred ------------------------------------------------ccCCCc-cEEcCCCeEEEEEEee--eecCCEE
Confidence 222222 2478899999999997 9999999
Q ss_pred EEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEe
Q psy2148 1460 EWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTT 1518 (1884)
Q Consensus 1460 ~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~ 1518 (1884)
.|+|+|..+..+.++.+ .++ .|.|.++..+|+|.|+|.|.|.+|...+++.|.|.
T Consensus 327 ~W~~~g~~~~~~~~~~~--~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 327 RWLRDGQPLASQNRIEV--SGG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp EEEETTEECCCCSSEEE--ETT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEECCEECCCCceEEE--ECC--EEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 99999999987766543 334 79999999999999999999999999999999885
No 29
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=3.5e-36 Score=377.08 Aligned_cols=375 Identities=21% Similarity=0.294 Sum_probs=275.5
Q ss_pred ccCCCCeeee-cCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCC--CcEEEEeeCCeEEEEEc----cCCCC
Q psy2148 912 DLGKAPEFLT-TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAG--SRIKTINDFGFVILEIN----DVYLR 984 (1884)
Q Consensus 912 ~~~~~p~~~~-~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~I~----~~~~~ 984 (1884)
....+|.|.. .+.+..+.+|+.++|.|.+. |.|.+.|+|+|+|..+... .++.+....+ +|.|. +++.+
T Consensus 12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~--g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~--~l~i~~~~~~~~~~ 87 (404)
T 3p3y_A 12 ELTQPPTITKQSAKDHIVDPRDNILIECEAK--GNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG--TLVIDFRSGGRPEE 87 (404)
T ss_dssp -CCCCCCEEEECCTTCEECSSSCCCCCEEEC--CSSCCEEEEEETTEECCGGGCSSCBCCSSSC--CCBCCCTTTCCTTS
T ss_pred hccCCCcccccCCccEEEcCCCCEEEEEEec--CCCCCeEEEEECCEEeeeecCCcceEecCCc--eEEEEeccCCCCcc
Confidence 3457888885 57889999999999999998 6788999999999988543 3443333333 35554 88899
Q ss_pred CCeEEEEEEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCC
Q psy2148 985 DSGLYTCKATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDN 1063 (1884)
Q Consensus 985 D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 1063 (1884)
|+|.|+|.|.|..|.. +..+.|.|...|..+ ......
T Consensus 88 D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~------------------------------------------~~~~~~ 125 (404)
T 3p3y_A 88 YEGEYQCFARNKFGTALSNRIRLQVSKSPLWP------------------------------------------KENLDP 125 (404)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEEEECCCCCCC------------------------------------------CCCCCC
T ss_pred CCEEEEEEEEcCCCeEeeeeEEEEEeccCccc------------------------------------------cCCCCC
Confidence 9999999999999987 467788887543221 111122
Q ss_pred cCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEe-ccCCCceEEEeeCcEEEEEEcccCcCC-cEEEEEEEEcCCeeeEEE
Q psy2148 1064 LDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRP-FATGSRVKTVYDFGFISLDMDYVYARD-SGEYICRATNKWGTAMTK 1141 (1884)
Q Consensus 1064 ~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~-l~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~G~~~~~ 1141 (1884)
..+.+|+.+.|.|.+. .+.|.+.+.|++++.. +..+.++.. ..++ .|.|.++..+| +|.|+|.|.|..|.....
T Consensus 126 ~~v~~G~~v~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~--~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~ 201 (404)
T 3p3y_A 126 VVVQEGAPLTLQCNPP-PGLPSPVIFWMSSSMEPITQDKRVSQ-GHNG--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQ 201 (404)
T ss_dssp EEEETTSCEEECCCCC-CCSSCCEEEEECTTSCBCCCCSSEEE-CTTS--CEEESSCCSGGGSSCBEEEEECTTTCCEEE
T ss_pred eEEccCCcEEEEeCCC-CCCCCCeEEEeCCCccccCCCCcEEE-cCCC--cEEEEeeeeccCCcceEEEEEeccccceec
Confidence 5677999999999984 3788999999998854 444444433 2233 59999999999 599999999998864332
Q ss_pred ---EEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccc
Q psy2148 1142 ---AKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERAN 1218 (1884)
Q Consensus 1142 ---~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 1218 (1884)
+.+.|...+..
T Consensus 202 ~~~~~l~v~~~~~~------------------------------------------------------------------ 215 (404)
T 3p3y_A 202 KNPFTLKVLTTRGV------------------------------------------------------------------ 215 (404)
T ss_dssp CCCBCEEEECCSCC------------------------------------------------------------------
T ss_pred cCceeEEEeccCCc------------------------------------------------------------------
Confidence 33333321110
Q ss_pred cccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEee---cceeeeecCCcEEEEEEEeecCCCc
Q psy2148 1219 ESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITE---IESVTVQEAEPVRFETRVEPRVDPR 1295 (1884)
Q Consensus 1219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~v~~g~~v~l~c~v~~~~~p~ 1295 (1884)
...+|.|... +....+.+|+.+.|.|.+.+ .|.
T Consensus 216 ------------------------------------------~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g--~p~ 251 (404)
T 3p3y_A 216 ------------------------------------------AERTPSFMYPQGTASSQMVLRGMDLLLECIASG--VPT 251 (404)
T ss_dssp ------------------------------------------CCCCCCBSSSCSSEEEEEEETTSCEEEECCBCC--SSC
T ss_pred ------------------------------------------cccCCccccccCCCCCceEecCCCEEEEEEECC--CCC
Confidence 0112222221 24567899999999998875 477
Q ss_pred ceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEee
Q psy2148 1296 LRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKK 1375 (1884)
Q Consensus 1296 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 1375 (1884)
+.+.|++++..+..... ........|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 252 ~~v~W~~~~~~~~~~~~--------------------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 311 (404)
T 3p3y_A 252 PDIAWYKKGGDLPSDKA--------------------KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA 311 (404)
T ss_dssp CEEEEEETTBCCCTTTE--------------------EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred CcEEEEECCEECCCCcc--------------------cccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC
Confidence 79999999987654310 0112234799999999999999999999999988889999876
Q ss_pred cCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCC
Q psy2148 1376 IPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDP 1455 (1884)
Q Consensus 1376 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p 1455 (1884)
+|.+ ...+.+ ..+.+|+.++|.|.+. |.|
T Consensus 312 ~p~~------------------------------------------------~~~~~~-~~v~~g~~~~l~C~~~--g~p 340 (404)
T 3p3y_A 312 APYW------------------------------------------------LDEPKN-LILAPGEDGRLVCRAN--GNP 340 (404)
T ss_dssp EEEE------------------------------------------------EECCCC-EEECTTCCEEEECEEE--EES
T ss_pred CCee------------------------------------------------eccCCc-ceeecCCcEEEEEEcc--ccC
Confidence 6543 222222 2477899999999997 999
Q ss_pred CCeEEEeecCeecCCCCC-ceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeC
Q psy2148 1456 NMKVEWFLNGKPLPHKNR-FNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTG 1519 (1884)
Q Consensus 1456 ~~~i~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~ 1519 (1884)
.|.|.|+++|..+..... ......++ +|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus 341 ~p~v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 341 KPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp CCEEEEEETTEEGGGSCCCTTEEEETT--EEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred CCceEEEECCEecCCCCCCceEEecCC--EEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 999999999999876542 22333344 799999999999999999999999999999999864
No 30
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=5.5e-36 Score=373.86 Aligned_cols=379 Identities=19% Similarity=0.216 Sum_probs=276.5
Q ss_pred cCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCC-cEEEEeeCCeEEEEEccCCCCCCeEEEE
Q psy2148 913 LGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS-RIKTINDFGFVILEINDVYLRDSGLYTC 991 (1884)
Q Consensus 913 ~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 991 (1884)
+..||.|...+.++.+.+|+.++|.|.+.+ +.|.+.|+|+|+|..+.... ++.....++ +|.|.+++.+|+|.|+|
T Consensus 3 v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C 79 (395)
T 1bih_A 3 VDKYPVLKDQPAEVLFRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRKDEG--SLVFLRPQASDEGHYQC 79 (395)
T ss_dssp --CCCEECCCCSEEEEETTSCEEECCCEES-CCSSCEEEEEESSSBCCTTTTTEEECTTSC--CEEESSCCGGGCEEEEE
T ss_pred cCCCCEeecCCCceEEeCCCEEEEEEEEec-CCCCceEEEEECCcCcccccceEEEecCCc--eEEEecCCCCCCcEEEE
Confidence 357899999999999999999999999994 37889999999999997765 333333333 69999999999999999
Q ss_pred EEEcCCeeEE-EEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCC
Q psy2148 992 KATNKHGEAT-TSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAG 1070 (1884)
Q Consensus 992 ~a~N~~G~~~-~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 1070 (1884)
.|.|..|... ..+.|.|...+. |.+. .. ...+.+|+
T Consensus 80 ~a~n~~g~~~s~~~~l~v~~~~~----------------------------------------p~~~--~~-~~~~~~G~ 116 (395)
T 1bih_A 80 FAETPAGVASSRVISFRKTYLIA----------------------------------------SPAK--TH-EKTPIEGR 116 (395)
T ss_dssp EEEETTEEEECCCEEEEEEEEEC----------------------------------------CCCE--EE-EECCBTTE
T ss_pred EEEeCCCeEEeEEEEEEEEEeec----------------------------------------CCcC--Cc-ceeeeeCC
Confidence 9999999865 335666653221 1111 11 25677999
Q ss_pred cEEEEEEEeeCCCCCcEEEEEECC---EeccC----CCceEEEeeCcEEEEEEcccCcCCcE---EEEEEEEcCCeeeEE
Q psy2148 1071 KVHFDCRLEPKSDPTMRIDWFFNG---RPFAT----GSRVKTVYDFGFISLDMDYVYARDSG---EYICRATNKWGTAMT 1140 (1884)
Q Consensus 1071 ~~~l~C~v~~~~~p~~~v~W~k~~---~~l~~----~~~~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~a~n~~G~~~~ 1140 (1884)
.+.|.|.+. .+.|.+.|.|+|+| .+... +.++... .++ .|.|.++..+|+| .|+|.|.|..|....
T Consensus 117 ~v~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~--~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~ 192 (395)
T 1bih_A 117 PFQLDCVLP-NAYPKPLITWKKRLSGADPNADVTDFDRRITAG-PDG--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV 192 (395)
T ss_dssp EEEECCCCC-EEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC-TTS--CEEEEEECGGGCCSSEEEEEEEECTTCSSCE
T ss_pred cEEEEecCC-CCCCCCeEEEEecCCCcCcccccccccccEEEc-CCC--cEEEEEEeeccCCCceEEEEEEEecccceEE
Confidence 999999973 27788999999986 22211 2333332 233 6999999999999 999999999998654
Q ss_pred EEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccc
Q psy2148 1141 KAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANES 1220 (1884)
Q Consensus 1141 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 1220 (1884)
............ ...
T Consensus 193 ~~~~~~~~~~~~---~~~-------------------------------------------------------------- 207 (395)
T 1bih_A 193 VLVEYEIKGVTK---DNS-------------------------------------------------------------- 207 (395)
T ss_dssp EEEEEEECCCBC---CSS--------------------------------------------------------------
T ss_pred EeeeEEeccccc---ccc--------------------------------------------------------------
Confidence 433322110000 000
Q ss_pred cccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEE
Q psy2148 1221 TELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVEC 1300 (1884)
Q Consensus 1221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W 1300 (1884)
......+|.| .+....+.+|+.+.|.|.+.+ .|.+.+.|
T Consensus 208 -------------------------------------~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g--~p~~~i~W 246 (395)
T 1bih_A 208 -------------------------------------GYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGS--NPMGYPNY 246 (395)
T ss_dssp -------------------------------------CCCCCCEEEE--ECCSEEEETTSCEEEEEEEEC--SSCCCCEE
T ss_pred -------------------------------------cccCCcCcee--cCCceEEECCCcEEEEEEecc--CCCCeEEE
Confidence 0001123444 356778999999999999975 47778999
Q ss_pred ecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceee-eEEEEEeecCce
Q psy2148 1301 SLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFT-KATISCKKIPTI 1379 (1884)
Q Consensus 1301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~ 1379 (1884)
++++..+..... .+.. .........|.|.++..+|+|.|+|.|.|..|.... ++.|.|..+|.+
T Consensus 247 ~~~g~~~~~~~~------------~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~ 311 (395)
T 1bih_A 247 FKNGKDVNGNPE------------DRIT---RHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKY 311 (395)
T ss_dssp EETTEECCCCTT------------SSEE---SCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEE
T ss_pred EECCEEcCCCCc------------eeEE---EEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCcc
Confidence 999986654311 1110 011122247999999999999999999999998766 788988765543
Q ss_pred eecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeE
Q psy2148 1380 QLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKV 1459 (1884)
Q Consensus 1380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i 1459 (1884)
...+.....+.+|+.++|.|.+. |.|.|.|
T Consensus 312 ------------------------------------------------~~~~~~~~~~~~g~~~~l~C~~~--g~p~p~v 341 (395)
T 1bih_A 312 ------------------------------------------------EQKPEKVIVVKQGQDVTIPCKVT--GLPAPNV 341 (395)
T ss_dssp ------------------------------------------------EECCCSEEEECTTSCEEEECEEE--EESCCCC
T ss_pred ------------------------------------------------ccCCCcceEecCCCeEEEEEEEC--cccCCee
Confidence 33333334578999999999997 9999999
Q ss_pred EEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEE
Q psy2148 1460 EWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKT 1517 (1884)
Q Consensus 1460 ~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V 1517 (1884)
.|+++|..+..+ ++. ..++ .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 342 ~W~~~g~~~~~~-~~~--~~~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 342 VWSHNAKPLSGG-RAT--VTDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp EEEETTEECCSS-SEE--EETT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEECCEECCCC-ceE--EECC--EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 999999998754 443 3444 8999999999999999999999999999988887
No 31
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=4.5e-35 Score=364.36 Aligned_cols=360 Identities=20% Similarity=0.274 Sum_probs=265.1
Q ss_pred CCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEee-CCccCCCCCCeEEEeeCCEEEEEEcccCcCC------Ce
Q psy2148 706 APVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFW-NGKPMKTGSRFRTFCDFGFVILEISPVYPED------CG 778 (1884)
Q Consensus 706 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d------~G 778 (1884)
+|.|...+.+...+.+|+.++|.|.+. |.|.++++|+| ||..+....++.....++ .|.|.+++.+| +|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~--g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~~~~~d~G 78 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKAS--GNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQ 78 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEE--EESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHHHEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEECC--CCCCCEEEEEcCCCCccccCCCceEEcCCc--eEEecccChhhccccccCc
Confidence 577887777766788999999999997 57889999999 888887655544443333 69999999987 99
Q ss_pred EEEEEEEecCceEE-EEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecc
Q psy2148 779 QYSCRAYNDYGEAV-TSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGK 857 (1884)
Q Consensus 779 ~Y~C~a~N~~g~~~-~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~ 857 (1884)
.|+|.|.|..|... ..+.|.|.
T Consensus 79 ~Y~C~a~n~~g~~~s~~~~v~v~--------------------------------------------------------- 101 (388)
T 2v5m_A 79 VYACLARNQFGSIISRDVHVRAV--------------------------------------------------------- 101 (388)
T ss_dssp EEEEEEEETTEEEECCCEEEEEE---------------------------------------------------------
T ss_pred eEEEEEEccCCeEEecceEEEEc---------------------------------------------------------
Confidence 99999999988642 23333321
Q ss_pred cceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEE
Q psy2148 858 RSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFE 937 (1884)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~ 937 (1884)
.+|.+...+.+..+.+|+.++|.
T Consensus 102 ---------------------------------------------------------~~p~~~~~~~~~~v~~G~~v~l~ 124 (388)
T 2v5m_A 102 ---------------------------------------------------------VAQYYEADVNKEHVIRGNSAVIK 124 (388)
T ss_dssp ---------------------------------------------------------CCCCCCCBCCCEEEETTSCEEEC
T ss_pred ---------------------------------------------------------cccccccCccceeeecCCcEEEE
Confidence 12334444566788999999999
Q ss_pred EEEeeCC-CCCcEEEEeeCCEEccC-----CCcEEEEeeCCeEEEEEccCCCCCC-eEEEEEEEcCCee-EEEE---EEE
Q psy2148 938 CRLTPTN-DPSMTVEWFHNGKALSA-----GSRIKTINDFGFVILEINDVYLRDS-GLYTCKATNKHGE-ATTS---CKL 1006 (1884)
Q Consensus 938 C~v~~~~-~P~~~v~W~~~g~~i~~-----~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~G~-~~~~---~~l 1006 (1884)
|.+.+.. .|.+.|+|+|++..+.. ..++.+..++ .|.|.+++.+|+ |.|+|.|.|..+. ...+ ..|
T Consensus 125 C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l 201 (388)
T 2v5m_A 125 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 201 (388)
T ss_dssp CBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTS---CEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCE
T ss_pred EECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCC---cEEEecCCccccCeeEEEEeccCCCCceeeccccceE
Confidence 9998421 13478999999987733 3455544333 599999999999 9999999998643 3322 356
Q ss_pred EEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc
Q psy2148 1007 TVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM 1086 (1884)
Q Consensus 1007 ~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~ 1086 (1884)
.|..+... .+|.+.........+.+|+.+.|.|.+. |.|.+
T Consensus 202 ~v~~~~~~-------------------------------------~~p~~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p 242 (388)
T 2v5m_A 202 VITEPISS-------------------------------------SAPRTPALVQKPLELMVAHTISLLCPAQ--GFPAP 242 (388)
T ss_dssp EEECCCSC-------------------------------------EEEECCSSCCCCEEEETTSCEEECCCCE--EESCC
T ss_pred EEecCCcC-------------------------------------CCCcCccccCCceEEeeCCcEEEEEECC--CCCCC
Confidence 66543210 0111111111224466899999999997 77889
Q ss_pred EEEEEECCEec------cCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeeccccccccccCC
Q psy2148 1087 RIDWFFNGRPF------ATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHDIVTESQLPD 1160 (1884)
Q Consensus 1087 ~v~W~k~~~~l------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~~~~~~~~~~ 1160 (1884)
.|.|+|++..+ ..+.++.. .. ..|.|.++..+|+|.|+|.|.|..|..+..+.|.|..++.
T Consensus 243 ~v~W~~~~~~~~~~~~~~~~~~~~~--~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~--------- 309 (388)
T 2v5m_A 243 SFRWYKFIEGTTRKQAVVLNDRVKQ--VS--GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLS--------- 309 (388)
T ss_dssp EEEEEEECTTSSCEEECCCSSSEEE--ET--TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEE---------
T ss_pred EEEEEecCCCCcccccccccCceec--cc--CEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCc---------
Confidence 99999985433 22333322 22 2799999999999999999999999998888888875332
Q ss_pred cccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccccccccccccCCCchhH
Q psy2148 1161 SMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQLPDSMSA 1240 (1884)
Q Consensus 1161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 (1884)
T Consensus 310 -------------------------------------------------------------------------------- 309 (388)
T 2v5m_A 310 -------------------------------------------------------------------------------- 309 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEe
Q psy2148 1241 EKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIF 1320 (1884)
Q Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 1320 (1884)
+...+....+.+|++++|.|.+.+. |.+.+.|++++..+...
T Consensus 310 --------------------------~~~~~~~~~v~~g~~~~l~C~~~g~--p~p~i~W~~~g~~i~~~---------- 351 (388)
T 2v5m_A 310 --------------------------AKIDPPTQTVDFGRPAVFTCQYTGN--PIKTVSWMKDGKAIGHS---------- 351 (388)
T ss_dssp --------------------------EEEESSEEEECTTSCEEEEEEEEEE--CCCEEEEEETTEECSCC----------
T ss_pred --------------------------cccCCCcEEecCCCCEEEEEEeccc--cCCeEEEEECCEECccC----------
Confidence 2233456688999999999999865 67789999998865322
Q ss_pred eccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEE
Q psy2148 1321 NFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISC 1373 (1884)
Q Consensus 1321 ~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 1373 (1884)
...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 352 -----------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 352 -----------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp -----------------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred -----------------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 137999999999999999999999999999888876
No 32
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=2.5e-33 Score=331.41 Aligned_cols=281 Identities=23% Similarity=0.448 Sum_probs=244.0
Q ss_pred CCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEE
Q psy2148 1423 QPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRA 1502 (1884)
Q Consensus 1423 ~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a 1502 (1884)
.||.|...+.+. .+.+|+.++|.|.+. |.|.+.|+|+|+|..+..+.++.+...++...|.|.+++.+|+|.|+|.|
T Consensus 4 ~pP~~~~~p~~~-~~~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 80 (284)
T 2rik_A 4 APPFFDLKPVSV-DLALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80 (284)
T ss_dssp CCCEEEECCCCE-EEETTCCEEEEEEEE--SSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEccccce-EecCCCcEEEEEEEE--cCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence 589998877654 588999999999997 99999999999999998888888777778889999999999999999999
Q ss_pred EecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEE
Q psy2148 1503 TNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARF 1582 (1884)
Q Consensus 1503 ~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l 1582 (1884)
.|..|..+.++.|.|..+| .|...+
T Consensus 81 ~n~~g~~~~~~~l~V~~~p------------------------------------------~~~~~~------------- 105 (284)
T 2rik_A 81 SNVAGKDSCSAQLGVQEPP------------------------------------------RFIKKL------------- 105 (284)
T ss_dssp EETTEEEEEEEEEEEECCC------------------------------------------EEEECC-------------
T ss_pred EECCceEEEEEEEEccCCC------------------------------------------cccccC-------------
Confidence 9999988888888886432 221111
Q ss_pred EEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEE
Q psy2148 1583 CTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVE 1662 (1884)
Q Consensus 1583 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 1662 (1884)
.....+.+|+.+.|.|.
T Consensus 106 ---------------------------------------------------------------~~~~~v~~g~~~~l~C~ 122 (284)
T 2rik_A 106 ---------------------------------------------------------------EPSRIVKQDEHTRYECK 122 (284)
T ss_dssp ---------------------------------------------------------------CSEEEEETTCCEEEEEE
T ss_pred ---------------------------------------------------------------CCceEecCCceEEEEEE
Confidence 01123557778888888
Q ss_pred EeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCC
Q psy2148 1663 FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVP 1742 (1884)
Q Consensus 1663 ~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~ 1742 (1884)
+.|.|.+.+.|++++..+....++.+........|.|.++..+|+|.|+|.|.|..|.....+.|.|. .+
T Consensus 123 ~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~----------~~ 192 (284)
T 2rik_A 123 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----------EP 192 (284)
T ss_dssp EESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE----------CC
T ss_pred EeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEe----------cC
Confidence 88888888888888888877777777777788899999999999999999999999999999999998 47
Q ss_pred CeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCe
Q psy2148 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAG 1822 (1884)
Q Consensus 1743 P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G 1822 (1884)
|.+...+....+..|+.++|.|.+.|.|.|.|+|+|++..+..+.++.+..++....|.|.++..+|+|.|+|.|.|..|
T Consensus 193 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 272 (284)
T 2rik_A 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272 (284)
T ss_dssp CBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred CcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCC
Confidence 87887788888999999999999999999999999999999999999888888888999999999999999999999999
Q ss_pred eEEEEEEEEEEe
Q psy2148 1823 EARCEAELVVQS 1834 (1884)
Q Consensus 1823 ~~~~~~~l~V~~ 1834 (1884)
..+.++.|+|.+
T Consensus 273 ~~~~~~~l~V~~ 284 (284)
T 2rik_A 273 SYTCVGSITLKA 284 (284)
T ss_dssp EEEEEEEEEECC
T ss_pred ceeEEEEEEEcC
Confidence 999999999863
No 33
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=1.2e-34 Score=360.55 Aligned_cols=340 Identities=20% Similarity=0.296 Sum_probs=265.2
Q ss_pred CCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEee-cCeecCCCCCceeeeeCceEEEEEeeeccCC------C
Q psy2148 1423 QPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFL-NGKPLPHKNRFNPIYDFGYVAMNFGWVYPED------S 1495 (1884)
Q Consensus 1423 ~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~-~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d------~ 1495 (1884)
.+|.|+..+.+...+.+|+.++|.|.+. |.|.|.|+|+| ||..+....++.....++ +|.|.+++.+| +
T Consensus 2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~--g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~~~~~d~ 77 (388)
T 2v5m_A 2 KGPVFLKEPTNRIDFSNSTGAEIECKAS--GNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHA 77 (388)
T ss_dssp EEEEEEECCCSEEEEETTTCEEEECEEE--EESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHHHE
T ss_pred CCCchhhCCCceEEEEcCccEEEEEECC--CCCCCEEEEEcCCCCccccCCCceEEcCCc--eEEecccChhhccccccC
Confidence 4799999988877788999999999996 99999999999 888887655555444555 69999999987 9
Q ss_pred eEEEEEEEecCcceE-EEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCccccc
Q psy2148 1496 GEYLCRATNLYGMDE-TRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKV 1574 (1884)
Q Consensus 1496 G~Y~c~a~n~~G~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v 1574 (1884)
|.|+|.|.|..|... ..+.|.|.. +|.|...+.+..+
T Consensus 78 G~Y~C~a~n~~g~~~s~~~~v~v~~------------------------------------------~p~~~~~~~~~~v 115 (388)
T 2v5m_A 78 QVYACLARNQFGSIISRDVHVRAVV------------------------------------------AQYYEADVNKEHV 115 (388)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEEC------------------------------------------CCCCCCBCCCEEE
T ss_pred ceEEEEEEccCCeEEecceEEEEcc------------------------------------------ccccccCccceee
Confidence 999999999998643 346666643 3334455566788
Q ss_pred ccCCceEEEEEEecCCC---CeEEEEEcCEEeeee-----eEEEE-----eeccceeeeec-ceeeEEEEecCC------
Q psy2148 1575 QEGEPARFCTRVTGYPR---PRVMWLINGHTIVNE-----IVRKI-----TATETTEMEHK-GKIQERVVDASE------ 1634 (1884)
Q Consensus 1575 ~~g~~~~l~C~~~g~p~---~~v~W~~~g~~i~~~-----~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~------ 1634 (1884)
.+|+.+.|.|.+.+.|. +.+.|++++..+... ....+ .........+. |.|.|.+.+...
T Consensus 116 ~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~ 195 (388)
T 2v5m_A 116 IRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLS 195 (388)
T ss_dssp ETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEEC
T ss_pred ecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeec
Confidence 99999999999998754 789999998766321 01111 11122334566 899999876421
Q ss_pred ------CCCCC-----Ceeee-cCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeec------CCCCCeEEEEeCceeE
Q psy2148 1635 ------KPAKP-----PVFTK-KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI------TSSPDFQIHTFSTKSI 1696 (1884)
Q Consensus 1635 ------~~~~~-----p~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~------~~~~~~~~~~~~~~~~ 1696 (1884)
.+..+ |.+.. ...+..+.+|+.+.|.|.+.|.|.|.++|+|++..+ ....++. ...++
T Consensus 196 ~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~ 271 (388)
T 2v5m_A 196 ATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK----QVSGT 271 (388)
T ss_dssp SSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE----EETTE
T ss_pred cccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCcee----cccCE
Confidence 11111 11111 224566889999999999999999999999985432 2222222 12457
Q ss_pred EEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEE
Q psy2148 1697 LIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYW 1776 (1884)
Q Consensus 1697 L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W 1776 (1884)
|.|.++..+|+|.|+|.|.|..|.....+.|.|.. +|.+...+....+.+|+.++|.|.+.|.|.|.|+|
T Consensus 272 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W 341 (388)
T 2v5m_A 272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341 (388)
T ss_dssp EEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE----------EEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEE
T ss_pred EEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeC----------CCccccCCCcEEecCCCCEEEEEEeccccCCeEEE
Confidence 99999999999999999999999999999999984 67787788889999999999999999999999999
Q ss_pred EeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2148 1777 LKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1777 ~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
+|+|..+..+. ..|.|.++..+|+|.|+|.|.|..|.+..++.|.|
T Consensus 342 ~~~g~~i~~~~----------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 342 MKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp EETTEECSCCS----------SEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EECCEECccCC----------CEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 99999886432 27999999999999999999999999999999987
No 34
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=1.9e-32 Score=323.89 Aligned_cols=279 Identities=24% Similarity=0.467 Sum_probs=239.6
Q ss_pred CCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEEE
Q psy2148 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRA 784 (1884)
Q Consensus 705 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 784 (1884)
.+|.|...+.+. .+.+|+.++|.|.+. |.|.+.++|+|+|..+..+.++++...++...|.|.+++.+|+|.|+|.|
T Consensus 4 ~pP~~~~~p~~~-~~~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 80 (284)
T 2rik_A 4 APPFFDLKPVSV-DLALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80 (284)
T ss_dssp CCCEEEECCCCE-EEETTCCEEEEEEEE--SSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEccccce-EecCCCcEEEEEEEE--cCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence 567777766554 689999999999998 57888999999999999888888877777889999999999999999999
Q ss_pred EecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEee
Q psy2148 785 YNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILES 864 (1884)
Q Consensus 785 ~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~~ 864 (1884)
.|..|..+..+.|.|..+|.+
T Consensus 81 ~n~~g~~~~~~~l~V~~~p~~----------------------------------------------------------- 101 (284)
T 2rik_A 81 SNVAGKDSCSAQLGVQEPPRF----------------------------------------------------------- 101 (284)
T ss_dssp EETTEEEEEEEEEEEECCCEE-----------------------------------------------------------
T ss_pred EECCceEEEEEEEEccCCCcc-----------------------------------------------------------
Confidence 999999888888877554432
Q ss_pred cCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecC-CceeecCCCeEEEEEEEeeC
Q psy2148 865 QLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTP-TDLTLAESTLAHFECRLTPT 943 (1884)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~v~~G~~v~l~C~v~~~ 943 (1884)
...+ ....+.+|+.+.|.|.+.
T Consensus 102 -------------------------------------------------------~~~~~~~~~v~~g~~~~l~C~~~-- 124 (284)
T 2rik_A 102 -------------------------------------------------------IKKLEPSRIVKQDEHTRYECKIG-- 124 (284)
T ss_dssp -------------------------------------------------------EECCCSEEEEETTCCEEEEEEEE--
T ss_pred -------------------------------------------------------cccCCCceEecCCceEEEEEEEe--
Confidence 2221 234678899999999998
Q ss_pred CCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHh
Q psy2148 944 NDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAI 1023 (1884)
Q Consensus 944 ~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~ 1023 (1884)
+.|.+.++|+|+|..+....++.+....+...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+.
T Consensus 125 g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~-------- 196 (284)
T 2rik_A 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR-------- 196 (284)
T ss_dssp SSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCC--------
T ss_pred eeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcce--------
Confidence 678899999999999998888887777777899999999999999999999999999999999998654432
Q ss_pred HhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCce
Q psy2148 1024 FANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRV 1103 (1884)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~ 1103 (1884)
.... ...+.+|+.+.|.|.+. |.|.+.|.|+|+|..+..+.++
T Consensus 197 ----------------------------------~~~~-~~~~~~g~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~ 239 (284)
T 2rik_A 197 ----------------------------------KKPH-PVETLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKKY 239 (284)
T ss_dssp ----------------------------------SCCC-CEEECTTCCEEEEEECB--SSSCCEEEEEETTEEECBTTTE
T ss_pred ----------------------------------eCCC-cceecCCCeEEEEEEEE--ecCCCEEEEEECCEECcCCCCE
Confidence 2111 24567899999999997 8888999999999999998888
Q ss_pred EEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1104 KTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1104 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
.+..++....|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 240 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 88888878899999999999999999999999999999999875
No 35
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=1.5e-32 Score=347.89 Aligned_cols=390 Identities=14% Similarity=0.146 Sum_probs=255.2
Q ss_pred eeeecCCceeecCCCeEEEEEEEeeCCCCC----cEEEEeeCC--EEc------------cCCCcEEEEeeCCeEEEEEc
Q psy2148 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPS----MTVEWFHNG--KAL------------SAGSRIKTINDFGFVILEIN 979 (1884)
Q Consensus 918 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~----~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~I~ 979 (1884)
.|+..+.++.+.+|++++|.|.+. +.|. +.|.|+|++ ..+ ....|+.+...++...|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRAS--ESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTID 80 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEES--SCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEES
T ss_pred ceEecCCeEEeeCCCCEEEEEecC--CCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeC
Confidence 456678889999999999999997 5565 489999963 322 12457777667777899999
Q ss_pred cCCCCCCeEEEEEEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceee
Q psy2148 980 DVYLRDSGLYTCKATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTS 1058 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1058 (1884)
+++.+|+|.|+|.|.|..|.. +..+.|.|.... .+|.+..
T Consensus 81 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~---------------------------------------~~P~v~~ 121 (438)
T 1qgc_4 81 PVEADDVATYYCQQSNEVPLTFGAGTKLDLKRAD---------------------------------------AAPTVSI 121 (438)
T ss_dssp SCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCC---------------------------------------BCCEEEE
T ss_pred CCcCcCCeeEEEEEecCCCccccCceeEEecCCC---------------------------------------CCCEEEe
Confidence 999999999999999988743 344677774311 2444443
Q ss_pred ecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEE--e-eCc----EEEEEEcccCcCCcEEEEEE
Q psy2148 1059 QLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTV--Y-DFG----FISLDMDYVYARDSGEYICR 1130 (1884)
Q Consensus 1059 ~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~--~-~~~----~~~l~i~~~~~~d~G~Y~C~ 1130 (1884)
.... ..+.+|+.+.|.|.+.+ +.|.+ .|.|+|||+.+..+...... . .++ ...|.|.++..+|+|.|+|.
T Consensus 122 ~~~~-~~~~~g~~~~l~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 199 (438)
T 1qgc_4 122 FPPS-SEQLTSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCE 199 (438)
T ss_dssp ECCC-HHHHHTTEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEE
T ss_pred cCCC-hhhccCCceEEEEEEcc-ccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEE
Confidence 2222 22336889999999973 35666 89999999998765211111 0 111 34799999999999999999
Q ss_pred EEcCCeeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchh
Q psy2148 1131 ATNKWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELS 1210 (1884)
Q Consensus 1131 a~n~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 1210 (1884)
|.|..|.......+.+.
T Consensus 200 a~n~~~~~~~~~~~~~~--------------------------------------------------------------- 216 (438)
T 1qgc_4 200 ATHKTSTSPIVKSFNRN--------------------------------------------------------------- 216 (438)
T ss_dssp EEETTCSSCEEEEEETT---------------------------------------------------------------
T ss_pred EEecccCCceecccccc---------------------------------------------------------------
Confidence 99998875322222100
Q ss_pred hhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEee
Q psy2148 1211 EYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEP 1290 (1884)
Q Consensus 1211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~ 1290 (1884)
.++.+...+....+.+|+.++|.|.+.+
T Consensus 217 ----------------------------------------------------~~~~~~~~~~~~~v~~G~~v~L~C~~~g 244 (438)
T 1qgc_4 217 ----------------------------------------------------ECEVMLVESGGGLVKPGGSLKLSCTASG 244 (438)
T ss_dssp ----------------------------------------------------C-CCEEEEECCEEECTTCCEEEEEEEES
T ss_pred ----------------------------------------------------cceeEEecCCceEEecCCcEEEEEEEcc
Confidence 0111222345567899999999999986
Q ss_pred cCCCcceEEEecc--cccccccccccc--eEEEee-ccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEcccc--
Q psy2148 1291 RVDPRLRVECSLS--TAFFFPFINIST--AFLIFN-FCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHG-- 1363 (1884)
Q Consensus 1291 ~~~p~~~~~W~~~--~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g-- 1363 (1884)
.+.+.+.+.|+|+ +..+........ ...... ....+.... .....+...|.|.+++.+|+|.|+|.|.|..|
T Consensus 245 ~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~ 323 (438)
T 1qgc_4 245 FIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTIS-RDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDE 323 (438)
T ss_dssp SCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEE-EETTTTEEEEEECSCCGGGCCEEEEEECCSSSCC
T ss_pred cccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEE-eecCCCeEEEEECCCChhhCEEEEEEEEccCCCc
Confidence 5333679999997 432211000000 000000 000111111 00113456899999999999999999999554
Q ss_pred ---ceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccc
Q psy2148 1364 ---EAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEM 1440 (1884)
Q Consensus 1364 ---~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g 1440 (1884)
.....+.|.|...+ ..+|.+...... ..+.+|
T Consensus 324 ~~~~~~~~~~l~V~~~~--------------------------------------------~~~P~v~~~~~~-~~~~~g 358 (438)
T 1qgc_4 324 GFAYWGQGTVVTVSAAK--------------------------------------------TTPPSVYPLAPG-SAAAAA 358 (438)
T ss_dssp CCCSBCCCEEEEECSSC--------------------------------------------CBCCEEEEECCC-GGGCCS
T ss_pred cceeeCCCEEEEEecCC--------------------------------------------CCCCeEEEcCcc-cccccC
Confidence 22234566665321 124544433322 246789
Q ss_pred cceEEEEEEeeCCC-CCC-eEEEeecCeecCCCCCceeeeeCce----EEEEEeeeccCCCeEEEEEEEecCcceEEEEE
Q psy2148 1441 QSTKFECQLAPVGD-PNM-KVEWFLNGKPLPHKNRFNPIYDFGY----VAMNFGWVYPEDSGEYLCRATNLYGMDETRAI 1514 (1884)
Q Consensus 1441 ~~~~l~C~~~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~ 1514 (1884)
+.++|.|.+. |. |.+ .|.|+++|..+....... ...++. ..|.|.++..+| |.|+|.|.|.+|.......
T Consensus 359 ~~v~L~C~~~--g~~P~~~~v~W~~~g~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~ 434 (438)
T 1qgc_4 359 SMVTLGCLVK--GYFPEPVTVTWNSGSLSSGVHTFPA-VLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK 434 (438)
T ss_dssp SEEEEEEEEE--SCBSSCCEEEEGGGTCCSSEEECCC-EEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEE
T ss_pred CcEEEEEEec--cccCCCcEEEEecCCCCCceeecCc-cccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeee
Confidence 9999999997 76 887 999999998875321111 122232 358999999889 9999999999998665554
Q ss_pred E
Q psy2148 1515 L 1515 (1884)
Q Consensus 1515 l 1515 (1884)
|
T Consensus 435 i 435 (438)
T 1qgc_4 435 I 435 (438)
T ss_dssp C
T ss_pred c
Confidence 4
No 36
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=7.6e-33 Score=339.73 Aligned_cols=333 Identities=13% Similarity=0.089 Sum_probs=231.9
Q ss_pred eeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCce
Q psy2148 1273 SVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQG 1352 (1884)
Q Consensus 1273 ~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 1352 (1884)
.+.+.+|+.++|.|.+. +.|.+.+.|+|++..+..................+..........+...|.|.+++.+|+|
T Consensus 3 ~v~~~~G~~v~L~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G 80 (363)
T 1wio_A 3 VVLGKKGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD 80 (363)
T ss_dssp EEEEETTSCEEECCCCT--TCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCE
T ss_pred eEEEeCCCeEEEEEEec--CCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCE
Confidence 46889999999999987 5688899999998643322111100000000011111000000335667999999999999
Q ss_pred EEEEEEEccccceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccC
Q psy2148 1353 EYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIK 1432 (1884)
Q Consensus 1353 ~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~ 1432 (1884)
.|+|.|.|..+ .+.|.|...+. +|
T Consensus 81 ~Y~C~~~n~~~----~~~l~V~~~~~---------------------------------------------~~------- 104 (363)
T 1wio_A 81 TYICEVEDQKE----EVQLLVFGLTA---------------------------------------------NS------- 104 (363)
T ss_dssp EEEEEETTEEE----EEEEEEEEEEE---------------------------------------------SS-------
T ss_pred EEEEEEEECCC----cEEEEEEeCCC---------------------------------------------CC-------
Confidence 99999998754 56666653110 11
Q ss_pred CccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEE
Q psy2148 1433 TQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETR 1512 (1884)
Q Consensus 1433 ~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~ 1512 (1884)
...+.+|+.++|.|.+. |.|.|.|+|+++|..+. . +...|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 105 -~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~--------~--~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~ 171 (363)
T 1wio_A 105 -DTHLLQGQSLTLTLESP--PGSSPSVQCRSPRGKNI--------Q--GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 171 (363)
T ss_dssp -CSSEESBSCEEEEEECC--TTCCCCEEEECSSSCEE--------E--ESSEEEECSBCGGGCEECEEEEEETTEEEEEC
T ss_pred -ceEEecCCCEEEEEEcC--CCCCCeEEEEcCCCccc--------c--cceEEEEeeCChhcCCEEEEEEecCCCeEEEE
Confidence 12478999999999986 89999999999876541 1 23479999999999999999999987776666
Q ss_pred EEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEEEEEec----
Q psy2148 1513 AILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTG---- 1588 (1884)
Q Consensus 1513 ~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g---- 1588 (1884)
+.|.|...|.. +....+.+|+.+.|.|.+.|
T Consensus 172 ~~l~v~~~p~~---------------------------------------------~~~~~~~~G~~v~l~C~~~~~~~~ 206 (363)
T 1wio_A 172 IDIVVLAFQKA---------------------------------------------SSIVYKKEGEQVEFSFPLAFTVEK 206 (363)
T ss_dssp CEECEECCSCS---------------------------------------------EEEEEEETBCCEEEECCCCCCCCS
T ss_pred EEEEEecCCCC---------------------------------------------CCceEEecCCEEEEEEEEeccccc
Confidence 66666532210 12334555666666665554
Q ss_pred -CCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEEEeccC
Q psy2148 1589 -YPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDP 1667 (1884)
Q Consensus 1589 -~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p 1667 (1884)
+|.|.++|+++
T Consensus 207 ~~P~p~i~W~~~-------------------------------------------------------------------- 218 (363)
T 1wio_A 207 LTGSGELWWQAE-------------------------------------------------------------------- 218 (363)
T ss_dssp SCEEEEEEEEES--------------------------------------------------------------------
T ss_pred CCCceeEEEecC--------------------------------------------------------------------
Confidence 44455555554
Q ss_pred CCeEEEEeCCeecCC--------CCCeEEEE----------eCceeEEEEcccccCCCeEEEEEEEeC--CceEEEEEEE
Q psy2148 1668 LPTIKWFREDFPITS--------SPDFQIHT----------FSTKSILIMRQVFMEDSGVFAVIAENR--GGKAKCSANL 1727 (1884)
Q Consensus 1668 ~~~i~W~~~~~~~~~--------~~~~~~~~----------~~~~~~L~i~~v~~~DsG~Y~C~a~n~--~g~~~~~~~l 1727 (1884)
|..+.. +.++.+.. ......|.|.++..+|+|.|+|.|.|. .|.....+.|
T Consensus 219 ---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l 289 (363)
T 1wio_A 219 ---------RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289 (363)
T ss_dssp ---------SCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEE
T ss_pred ---------CCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeE
Confidence 443332 22222221 222458999999999999999999999 9999999999
Q ss_pred EEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcE--EEEEeCCEecCCCCCeEEeecCCeEEEEEccC
Q psy2148 1728 VVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD--VYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEA 1805 (1884)
Q Consensus 1728 ~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~--v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~ 1805 (1884)
.|.. + .|+.++|.|.+.|.|.|. |+|+|+|..+..+ ..|.|.++
T Consensus 290 ~V~~-------------v----------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~-----------~~l~i~~v 335 (363)
T 1wio_A 290 VVMR-------------A----------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS-----------KREKAVWV 335 (363)
T ss_dssp EEEE-------------E----------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSEE-----------ESSSEEEE
T ss_pred EEEE-------------e----------cCCCeeEEEEEccccCCCccEEEEeCCCceeee-----------eeeeeeee
Confidence 8873 1 188899999999999998 9999999877531 25788999
Q ss_pred CCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1806 VVEDSGAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1806 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
..+|+|.|+|.|.|. |....+.+|.|.
T Consensus 336 ~~~d~G~Y~C~a~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 336 LNPEAGMWQCLLSDS-GQVLLESNIKVL 362 (363)
T ss_dssp SSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred ccccceeEEEEEecC-CeEEEecceEec
Confidence 999999999999964 677778888774
No 37
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=2.7e-32 Score=345.42 Aligned_cols=388 Identities=13% Similarity=0.105 Sum_probs=251.0
Q ss_pred eeEeecceeeeecCCcEEEEEEEeecCCCc----ceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEE
Q psy2148 1266 RFITEIESVTVQEAEPVRFETRVEPRVDPR----LRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSL 1341 (1884)
Q Consensus 1266 ~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 1341 (1884)
.|...+..+.+.+|++++|.|.+.+ .|. +.+.|+|++.........+...........+ .......+...|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~--~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~L 77 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASE--SVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDR---FSGSGSRTDFTL 77 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESS--CCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTT---EEEEEETTEEEE
T ss_pred ceEecCCeEEeeCCCCEEEEEecCC--CcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCc---EEEEccCCcEEE
Confidence 3556678899999999999999875 344 5899999742111000000000000000011 122224556789
Q ss_pred EEeeecccCceEEEEEEEccccce-eeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcc
Q psy2148 1342 DIDYVYPEDQGEYVCRAYNDHGEA-FTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPE 1420 (1884)
Q Consensus 1342 ~I~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1420 (1884)
.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..+.
T Consensus 78 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~------------------------------------------- 114 (438)
T 1qgc_4 78 TIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRAD------------------------------------------- 114 (438)
T ss_dssp EESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCC-------------------------------------------
T ss_pred EeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCC-------------------------------------------
Confidence 999999999999999999988743 334666664221
Q ss_pred cCCCCeEEEccCCccccccccceEEEEEEeeCCCCCC-eEEEeecCeecCCCCCc--eee-eeCc----eEEEEEeeecc
Q psy2148 1421 KKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNM-KVEWFLNGKPLPHKNRF--NPI-YDFG----YVAMNFGWVYP 1492 (1884)
Q Consensus 1421 ~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~-~i~W~~~~~~l~~~~~~--~~~-~~~~----~~~L~i~~~~~ 1492 (1884)
.+|.+...+.... +.+|+.+.|.|.+. ++.|.+ .|+|+|+|..+..+... ... ..++ ...|.|.++..
T Consensus 115 --~~P~v~~~~~~~~-~~~g~~~~l~C~~~-g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 190 (438)
T 1qgc_4 115 --AAPTVSIFPPSSE-QLTSGGASVVCFLN-NFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY 190 (438)
T ss_dssp --BCCEEEEECCCHH-HHHTTEEEEEEEEE-EEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHH
T ss_pred --CCCEEEecCCChh-hccCCceEEEEEEc-cccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCccc
Confidence 2566554333322 44688999999986 237777 99999999998765111 111 1112 34799999999
Q ss_pred CCCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCccc
Q psy2148 1493 EDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQ 1572 (1884)
Q Consensus 1493 ~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 1572 (1884)
+|+|.|+|.|.|..|..... +.+... .++.+..
T Consensus 191 ~d~G~Y~C~a~n~~~~~~~~--~~~~~~----------------------------------------~~~~~~~----- 223 (438)
T 1qgc_4 191 ERHNSYTCEATHKTSTSPIV--KSFNRN----------------------------------------ECEVMLV----- 223 (438)
T ss_dssp HTCCEEEEEEEETTCSSCEE--EEEETT----------------------------------------C-CCEEE-----
T ss_pred CCCCeEEEEEEecccCCcee--cccccc----------------------------------------cceeEEe-----
Confidence 99999999999988764222 222100 0000101
Q ss_pred ccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeec
Q psy2148 1573 KVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAF 1652 (1884)
Q Consensus 1573 ~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~ 1652 (1884)
.+....+.
T Consensus 224 ------------------------------------------------------------------------~~~~~~v~ 231 (438)
T 1qgc_4 224 ------------------------------------------------------------------------ESGGGLVK 231 (438)
T ss_dssp ------------------------------------------------------------------------EECCEEEC
T ss_pred ------------------------------------------------------------------------cCCceEEe
Confidence 11223456
Q ss_pred CCCeEEEEEEEeccC--CCeEEEEeC--CeecC-----------------CCCCeEEEEe--CceeEEEEcccccCCCeE
Q psy2148 1653 EQDQARFEVEFDGDP--LPTIKWFRE--DFPIT-----------------SSPDFQIHTF--STKSILIMRQVFMEDSGV 1709 (1884)
Q Consensus 1653 ~G~~~~l~C~~~g~p--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~L~i~~v~~~DsG~ 1709 (1884)
+|+.+.|.|.+.|.| .+.+.|+|+ +..+. ...++.+... .....|.|.+++.+|+|.
T Consensus 232 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~ 311 (438)
T 1qgc_4 232 PGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAM 311 (438)
T ss_dssp TTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCE
T ss_pred cCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEE
Confidence 777777777777777 567888876 43221 1345555543 335689999999999999
Q ss_pred EEEEEEeCCc-----eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCc-EEEEEeCCEe
Q psy2148 1710 FAVIAENRGG-----KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKNGKK 1782 (1884)
Q Consensus 1710 Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~k~~~~ 1782 (1884)
|.|.|.|..+ .......|.|...+. .+|.+...+....+.+|+.++|.|.+.|. |.| .|.|+|+|..
T Consensus 312 Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~------~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~ 385 (438)
T 1qgc_4 312 YYCVRREDGGDEGFAYWGQGTVVTVSAAKT------TPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLS 385 (438)
T ss_dssp EEEEECCSSSCCCCCSBCCCEEEEECSSCC------BCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCC
T ss_pred EEEEEEccCCCccceeeCCCEEEEEecCCC------CCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCC
Confidence 9999999544 223446777764221 46766655545557789999999999997 888 9999999988
Q ss_pred cCCCCCeEEeecCC---eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2148 1783 IIPDIRYKTLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELV 1831 (1884)
Q Consensus 1783 l~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 1831 (1884)
+.......+...+. .+.|.|.++..+| |.|+|.|.|.+|.......|.
T Consensus 386 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~ 436 (438)
T 1qgc_4 386 SGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 436 (438)
T ss_dssp SSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred CceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence 75321111222221 1269999998889 999999999999876665543
No 38
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.98 E-value=9.9e-32 Score=329.79 Aligned_cols=328 Identities=14% Similarity=0.157 Sum_probs=240.9
Q ss_pred eeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEcc--------------CCCcEEEEe---eCCeEEEEEccCCCCCCeE
Q psy2148 926 LTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALS--------------AGSRIKTIN---DFGFVILEINDVYLRDSGL 988 (1884)
Q Consensus 926 ~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~--------------~~~~~~~~~---~~~~~~L~I~~~~~~D~G~ 988 (1884)
+.+.+|++++|.|.+. +.|.+.|+|+|+|..+. ...|+.+.. +++...|.|.+++.+|+|.
T Consensus 4 v~~~~G~~v~L~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~ 81 (363)
T 1wio_A 4 VLGKKGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 81 (363)
T ss_dssp EEEETTSCEEECCCCT--TCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred EEEeCCCeEEEEEEec--CCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence 5788999999999997 78889999999986421 123444332 3345579999999999999
Q ss_pred EEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCC
Q psy2148 989 YTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPE 1068 (1884)
Q Consensus 989 Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 1068 (1884)
|+|.|.|..+ .+.|.|...+ . +| ...+.+
T Consensus 82 Y~C~~~n~~~----~~~l~V~~~~---~------------------------------------~~--------~~~v~~ 110 (363)
T 1wio_A 82 YICEVEDQKE----EVQLLVFGLT---A------------------------------------NS--------DTHLLQ 110 (363)
T ss_dssp EEEEETTEEE----EEEEEEEEEE---E------------------------------------SS--------CSSEES
T ss_pred EEEEEEECCC----cEEEEEEeCC---C------------------------------------CC--------ceEEec
Confidence 9999998743 5677776421 0 11 135678
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEee
Q psy2148 1069 AGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148 (1884)
Q Consensus 1069 g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~ 1148 (1884)
|+.+.|.|.+. +.|.+.|.|+|+|..+. .. ...|.|.++..+|+|.|+|.|.|..+.....+.|.|..
T Consensus 111 G~~v~l~C~~~--~~p~~~v~W~~~~~~~~--------~~--~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~ 178 (363)
T 1wio_A 111 GQSLTLTLESP--PGSSPSVQCRSPRGKNI--------QG--GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 178 (363)
T ss_dssp BSCEEEEEECC--TTCCCCEEEECSSSCEE--------EE--SSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEEC
T ss_pred CCCEEEEEEcC--CCCCCeEEEEcCCCccc--------cc--ceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec
Confidence 99999999997 67889999999986542 11 23799999999999999999999988777666665542
Q ss_pred ccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccccccc
Q psy2148 1149 KHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDI 1228 (1884)
Q Consensus 1149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 1228 (1884)
++..
T Consensus 179 ~p~~---------------------------------------------------------------------------- 182 (363)
T 1wio_A 179 FQKA---------------------------------------------------------------------------- 182 (363)
T ss_dssp CSCS----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 2110
Q ss_pred cccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecC---CCcceEEEecccc
Q psy2148 1229 VTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRV---DPRLRVECSLSTA 1305 (1884)
Q Consensus 1229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~---~p~~~~~W~~~~~ 1305 (1884)
+....+.+|+.+.|.|.+.+.. .|.+.+.|++++.
T Consensus 183 ------------------------------------------~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~ 220 (363)
T 1wio_A 183 ------------------------------------------SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA 220 (363)
T ss_dssp ------------------------------------------EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSC
T ss_pred ------------------------------------------CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCC
Confidence 1345788999999999887522 5788999999998
Q ss_pred cccccccccceEEEeeccceeeeeee-------eeeeeceEEEEEeeecccCceEEEEEEEcc--ccceeeeEEEEEeec
Q psy2148 1306 FFFPFINISTAFLIFNFCLHAVIFSH-------PIFDLGFVSLDIDYVYPEDQGEYVCRAYND--HGEAFTKATISCKKI 1376 (1884)
Q Consensus 1306 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~ 1376 (1884)
.+..... .+.....+..... .....+...|.|.++..+|+|.|+|.|.|. .|.....+.|.|..
T Consensus 221 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~- 293 (363)
T 1wio_A 221 SSSKSWI------TFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR- 293 (363)
T ss_dssp CCCCCEE------EEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE-
T ss_pred CccceEE------EEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE-
Confidence 7654200 0000000000000 001333558999999999999999999999 99888888887741
Q ss_pred CceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCCC
Q psy2148 1377 PTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPN 1456 (1884)
Q Consensus 1377 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~ 1456 (1884)
..|+.+.|+|.+. |.|+
T Consensus 294 -------------------------------------------------------------v~g~~~~l~C~~~--g~p~ 310 (363)
T 1wio_A 294 -------------------------------------------------------------ATQLQKNLTCEVW--GPTS 310 (363)
T ss_dssp -------------------------------------------------------------ECCCSSSEEEEEE--SSCC
T ss_pred -------------------------------------------------------------ecCCCeeEEEEEc--cccC
Confidence 1277899999997 9888
Q ss_pred Ce--EEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEe
Q psy2148 1457 MK--VEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTT 1518 (1884)
Q Consensus 1457 ~~--i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~ 1518 (1884)
|. |.|+|+|..+..+ ..|.|.++..+|+|.|+|.|.|. |....+..|.|.
T Consensus 311 p~~~i~W~~~~~~~~~~-----------~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 311 PKLMLSLKLENKEAKVS-----------KREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL 362 (363)
T ss_dssp TTCCEEEECSSSSCSEE-----------ESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred CCccEEEEeCCCceeee-----------eeeeeeeeccccceeEEEEEecC-CeEEEecceEec
Confidence 88 9999999887532 23567899999999999999975 667777777763
No 39
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.98 E-value=5.6e-31 Score=314.40 Aligned_cols=284 Identities=26% Similarity=0.365 Sum_probs=215.3
Q ss_pred CCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceee-eeCc-eEEEEEeeecc-CCCeEE
Q psy2148 1422 KQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPI-YDFG-YVAMNFGWVYP-EDSGEY 1498 (1884)
Q Consensus 1422 ~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~-~~~~-~~~L~i~~~~~-~d~G~Y 1498 (1884)
..||.|...+.+. .+.+|+.++|.|.+. |.|.+.|+|+|+|..+.. .++... ..++ ...|.|.++.. +|+|.|
T Consensus 4 ~~~P~~~~~p~~~-~v~~G~~v~l~C~~~--g~p~~~i~W~k~g~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y 79 (304)
T 2yd9_A 4 EEPPRFIKEPKDQ-IGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVY 79 (304)
T ss_dssp CCCCEEEECCCCE-EEETTSCEEEEEEEE--CSSCCEEEEC-------C-TTEEEEEETTTTEEEEEECSCCTTTTCSEE
T ss_pred ccCCeeeecCCce-EecCCCeEEEEEEEE--EeCCCeEEEEECCEECCC-CceEEEEecCCCceEEEEecccccCCCeEE
Confidence 4689999887764 488999999999997 999999999999999864 344433 2333 47899999998 999999
Q ss_pred EEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCC
Q psy2148 1499 LCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGE 1578 (1884)
Q Consensus 1499 ~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~ 1578 (1884)
+|.|.|..|.....+.|.|..++.. +
T Consensus 80 ~C~a~n~~g~~~~~~~l~V~~~~~~--------------------------------------p---------------- 105 (304)
T 2yd9_A 80 ECVAQNSVGEITVHAKLTVLREDQL--------------------------------------P---------------- 105 (304)
T ss_dssp EEEEECSSCEECCEEEEEEECGGGC--------------------------------------C----------------
T ss_pred EEEEECCCCeEEEEEEEEEeccccC--------------------------------------C----------------
Confidence 9999999998888888888643210 0
Q ss_pred ceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEE
Q psy2148 1579 PARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQAR 1658 (1884)
Q Consensus 1579 ~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~ 1658 (1884)
...|.+...+....+.+|+.+.
T Consensus 106 ----------------------------------------------------------~~~p~i~~~~~~~~v~~g~~v~ 127 (304)
T 2yd9_A 106 ----------------------------------------------------------SGFPNIDMGPQLKVVERTRTAT 127 (304)
T ss_dssp ----------------------------------------------------------TTCCEEEECCCCEEEETTSCEE
T ss_pred ----------------------------------------------------------CCCCeeecCCccEEEeCCCeEE
Confidence 0112333334455677888999
Q ss_pred EEEEEeccCCCeEEEEeCCeecCCCCC-eEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEE-EEEEEEecccCC
Q psy2148 1659 FEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS-ANLVVEEKRQGG 1736 (1884)
Q Consensus 1659 l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~ 1736 (1884)
|.|.+.|.|.+.++|++++..+..... ..+. ....+.|.|.++..+|+|.|+|.|.|..|..... +.|.|....
T Consensus 128 l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~--- 203 (304)
T 2yd9_A 128 MLCAASGNPDPEITWFKDFLPVDPSASNGRIK-QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN--- 203 (304)
T ss_dssp ECCEEECSSCCEEEEEETTEECCGGGGTTSEE-ECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCC---
T ss_pred EEEECccCCCCeEEEEECCEECcCCCCcceEE-eCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeec---
Confidence 999999999999999999998765421 2222 2334589999999999999999999999887644 566665321
Q ss_pred CCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEE
Q psy2148 1737 RGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECV 1816 (1884)
Q Consensus 1737 ~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 1816 (1884)
.+|.|...+....+.+|+.++|.|.+.|.|.|.|+|+|+|..+..+.++. .+...|.|.++ +|+|.|+|.
T Consensus 204 ----~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~ 273 (304)
T 2yd9_A 204 ----VAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDSANYTCV 273 (304)
T ss_dssp ----EEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSCEEEEEE
T ss_pred ----cCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc----CCcEEEEEccc--ccCEEEEEE
Confidence 47888888888889999999999999999999999999999997765432 23446777776 699999999
Q ss_pred EEeCCeeEEEEEEEEEEec
Q psy2148 1817 AMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1817 a~N~~G~~~~~~~l~V~~~ 1835 (1884)
|.|..|..+.++.|.|.+.
T Consensus 274 a~N~~G~~~~~~~l~V~~~ 292 (304)
T 2yd9_A 274 AMSSLGVIEAVAQITVKSL 292 (304)
T ss_dssp EEETTEEEEEEEEEC----
T ss_pred EEeCCCcEEEEEEEEEecC
Confidence 9999999999999999874
No 40
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.97 E-value=2.4e-31 Score=320.54 Aligned_cols=297 Identities=14% Similarity=0.151 Sum_probs=238.8
Q ss_pred CCCCeEEEccCCccccccccceEEEEEEeeCCC-CCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEE
Q psy2148 1422 KQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGD-PNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLC 1500 (1884)
Q Consensus 1422 ~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~-p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c 1500 (1884)
..||.|..++. ..+.+|+.++|.|.+. |. |.+.|.|+|+|..+..+.++.+ ..+...|.|.+++.+|+|.|+|
T Consensus 5 ~~~P~~~~~~~--~~v~~G~~v~l~C~~~--~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C 78 (317)
T 2y25_A 5 FTGPHFVEYLS--WEVTGECNVLLKCKVA--NIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEV 78 (317)
T ss_dssp SSCCEEEEEEE--EEEETTTEEEEEEEEE--SCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEE
T ss_pred cCCCcEeeeee--EEECCCCeEEEEEEEc--CCCCCCEEEEEECCeEcCCCCcEEE--ECCeEEEEEccCCcccCeEEEE
Confidence 46899986653 5689999999999986 66 7899999999999987766653 3555799999999999999999
Q ss_pred EEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCce
Q psy2148 1501 RATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPA 1580 (1884)
Q Consensus 1501 ~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~ 1580 (1884)
.|.|..|.....+.|.|... |.+...+....+.+|+++
T Consensus 79 ~~~n~~g~~~~~~~l~v~~~------------------------------------------~~~~~~~~~~~~~~g~~~ 116 (317)
T 2y25_A 79 ILKDDRGKDKSRLKLVDEAF------------------------------------------KELMMEVCKKIALSATDL 116 (317)
T ss_dssp EEESSSCEEEEEECCSTHHH------------------------------------------HHHHHHHHHHHHTCBCCC
T ss_pred EEECCCCcEEEEEEEEEecC------------------------------------------ccccccCCceecccCCCe
Confidence 99999997766655554321 222333345567889999
Q ss_pred EEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEE
Q psy2148 1581 RFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFE 1660 (1884)
Q Consensus 1581 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~ 1660 (1884)
.|.|.+. .+.|.
T Consensus 117 ~l~c~~~--------------------------------------------------------------------~~~l~ 128 (317)
T 2y25_A 117 KIQSTAE--------------------------------------------------------------------GIQLY 128 (317)
T ss_dssp EEEECSS--------------------------------------------------------------------EEEEE
T ss_pred EEEeecc--------------------------------------------------------------------ccEEE
Confidence 9999543 25688
Q ss_pred EEEec-cCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEeccc-----
Q psy2148 1661 VEFDG-DPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ----- 1734 (1884)
Q Consensus 1661 C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~----- 1734 (1884)
|.+.+ .|.+.++|+++|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|....++.|.|.....
T Consensus 129 c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~ 208 (317)
T 2y25_A 129 SFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEF 208 (317)
T ss_dssp EEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHH
T ss_pred EEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhh
Confidence 98887 689999999999999888888887777778899999999999999999999999988888887642000
Q ss_pred -----CCCCCCCCCeEEe-ccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeec-CCeEEEEEccCCC
Q psy2148 1735 -----GGRGGVVPPSFLT-TISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE-DNLFTLLIIEAVV 1807 (1884)
Q Consensus 1735 -----~~~~~~~~P~~~~-~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~L~i~~~~~ 1807 (1884)
.......+|.+.. .+....+.+|+.++|.|.+.|.|.|.|+|+|+|..+..+.++.+... +..+.|.|.++..
T Consensus 209 ~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 288 (317)
T 2y25_A 209 QRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVST 288 (317)
T ss_dssp HHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCS
T ss_pred cccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCH
Confidence 0000012455554 45567899999999999999999999999999999998888888766 6778999999999
Q ss_pred CCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1808 EDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1808 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 289 ~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 289 ADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp TTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred HHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 999999999999999999999999985
No 41
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=307.29 Aligned_cols=284 Identities=25% Similarity=0.407 Sum_probs=211.5
Q ss_pred CCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEe--eCCEEEEEEcccCc-CCCeEEE
Q psy2148 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFC--DFGFVILEISPVYP-EDCGQYS 781 (1884)
Q Consensus 705 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~--~~~~~~L~i~~~~~-~d~G~Y~ 781 (1884)
.+|.|...+.+. .+.+|++++|.|.+. |.|.+.++|+|+|..+.. .++.+.. ++....|.|.+++. +|+|.|+
T Consensus 5 ~~P~~~~~p~~~-~v~~G~~v~l~C~~~--g~p~~~i~W~k~g~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~ 80 (304)
T 2yd9_A 5 EPPRFIKEPKDQ-IGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYE 80 (304)
T ss_dssp CCCEEEECCCCE-EEETTSCEEEEEEEE--CSSCCEEEEC-------C-TTEEEEEETTTTEEEEEECSCCTTTTCSEEE
T ss_pred cCCeeeecCCce-EecCCCeEEEEEEEE--EeCCCeEEEEECCEECCC-CceEEEEecCCCceEEEEecccccCCCeEEE
Confidence 578888776654 689999999999998 678889999999998854 3444432 33457899999998 9999999
Q ss_pred EEEEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceE
Q psy2148 782 CRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSII 861 (1884)
Q Consensus 782 C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~ 861 (1884)
|.|.|..|..+..+.|.|...+...
T Consensus 81 C~a~n~~g~~~~~~~l~V~~~~~~p------------------------------------------------------- 105 (304)
T 2yd9_A 81 CVAQNSVGEITVHAKLTVLREDQLP------------------------------------------------------- 105 (304)
T ss_dssp EEEECSSCEECCEEEEEEECGGGCC-------------------------------------------------------
T ss_pred EEEECCCCeEEEEEEEEEeccccCC-------------------------------------------------------
Confidence 9999999998778877775432110
Q ss_pred EeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEEe
Q psy2148 862 LESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLT 941 (1884)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~ 941 (1884)
...|.|...+....+.+|+.+.|.|.+.
T Consensus 106 ----------------------------------------------------~~~p~i~~~~~~~~v~~g~~v~l~C~~~ 133 (304)
T 2yd9_A 106 ----------------------------------------------------SGFPNIDMGPQLKVVERTRTATMLCAAS 133 (304)
T ss_dssp ----------------------------------------------------TTCCEEEECCCCEEEETTSCEEECCEEE
T ss_pred ----------------------------------------------------CCCCeeecCCccEEEeCCCeEEEEEECc
Confidence 0236666777788899999999999998
Q ss_pred eCCCCCcEEEEeeCCEEccCCC---cEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEE-EEEEEEeecccccc
Q psy2148 942 PTNDPSMTVEWFHNGKALSAGS---RIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTS-CKLTVKGRQGIDVE 1017 (1884)
Q Consensus 942 ~~~~P~~~v~W~~~g~~i~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~-~~l~V~~~~~~~~~ 1017 (1884)
+.|.+.|+|+|+|..+.... ++....+ + .|.|.+++.+|+|.|+|.|.|..|..... +.|.|....
T Consensus 134 --g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~----- 203 (304)
T 2yd9_A 134 --GNPDPEITWFKDFLPVDPSASNGRIKQLRS-G--ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN----- 203 (304)
T ss_dssp --CSSCCEEEEEETTEECCGGGGTTSEEECTT-S--CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCC-----
T ss_pred --cCCCCeEEEEECCEECcCCCCcceEEeCCC-e--EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeec-----
Confidence 77888999999999986543 3333222 2 69999999999999999999999987644 566665211
Q ss_pred cchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEec
Q psy2148 1018 PQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPF 1097 (1884)
Q Consensus 1018 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l 1097 (1884)
.+|.+.....+ ..+.+|+.+.|.|.+. |.|.+.|.|+|+|..+
T Consensus 204 ----------------------------------~~P~~~~~~~~-~~v~~G~~v~l~C~~~--g~p~p~v~W~~~~~~l 246 (304)
T 2yd9_A 204 ----------------------------------VAPRFSILPMS-HEIMPGGNVNITCVAV--GSPMPYVKWMQGAEDL 246 (304)
T ss_dssp ----------------------------------EEEEEEECCCC-BCCCTTCCEEEEEEEE--EESCCEEEEEETTEEC
T ss_pred ----------------------------------cCCcEEecCCc-eEEcCCCeEEEEEEEe--eeCCCEEEEEECCEEC
Confidence 23444444333 6788999999999997 7788999999999999
Q ss_pred cCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeecccc
Q psy2148 1098 ATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHDI 1152 (1884)
Q Consensus 1098 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~~ 1152 (1884)
..+.++ ..+...|.|.++ +|+|.|+|.|.|..|..+.++.|.|..++.+
T Consensus 247 ~~~~~~----~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 295 (304)
T 2yd9_A 247 TPEDDM----PVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295 (304)
T ss_dssp SCSSSC----CBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-------
T ss_pred CCcccc----cCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCccc
Confidence 876543 234557888776 6999999999999999999999999876654
No 42
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.97 E-value=7.5e-31 Score=316.18 Aligned_cols=302 Identities=18% Similarity=0.254 Sum_probs=227.0
Q ss_pred cCCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEE
Q psy2148 704 RQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCR 783 (1884)
Q Consensus 704 ~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 783 (1884)
..+|.|..+.. ..+.+|++++|.|.+.+ ..|.+.++|+|+|..+..+.++.+. .+...|.|.+++.+|+|.|+|.
T Consensus 5 ~~~P~~~~~~~--~~v~~G~~v~l~C~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~ 79 (317)
T 2y25_A 5 FTGPHFVEYLS--WEVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVI 79 (317)
T ss_dssp SSCCEEEEEEE--EEEETTTEEEEEEEEES-CCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEEE
T ss_pred cCCCcEeeeee--EEECCCCeEEEEEEEcC-CCCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccCeEEEEE
Confidence 36788876553 47899999999999884 2378999999999999877776654 3447899999999999999999
Q ss_pred EEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEe
Q psy2148 784 AYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILE 863 (1884)
Q Consensus 784 a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~ 863 (1884)
|.|..|.....+.|.|...|.+.
T Consensus 80 ~~n~~g~~~~~~~l~v~~~~~~~--------------------------------------------------------- 102 (317)
T 2y25_A 80 LKDDRGKDKSRLKLVDEAFKELM--------------------------------------------------------- 102 (317)
T ss_dssp EESSSCEEEEEECCSTHHHHHHH---------------------------------------------------------
T ss_pred EECCCCcEEEEEEEEEecCcccc---------------------------------------------------------
Confidence 99999987766655543322111
Q ss_pred ecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCC---------eE
Q psy2148 864 SQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAEST---------LA 934 (1884)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~---------~v 934 (1884)
..+.+..+.+|+ .+
T Consensus 103 ---------------------------------------------------------~~~~~~~~~~g~~~~l~c~~~~~ 125 (317)
T 2y25_A 103 ---------------------------------------------------------MEVCKKIALSATDLKIQSTAEGI 125 (317)
T ss_dssp ---------------------------------------------------------HHHHHHHHTCBCCCEEEECSSEE
T ss_pred ---------------------------------------------------------ccCCceecccCCCeEEEeecccc
Confidence 000111222233 34
Q ss_pred EEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeeccc
Q psy2148 935 HFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGI 1014 (1884)
Q Consensus 935 ~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 1014 (1884)
.|.|.+.+ +.|.+.++|+|+|..+..+.++.+...++.++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|......
T Consensus 126 ~l~c~~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~ 204 (317)
T 2y25_A 126 QLYSFVTY-YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEA 204 (317)
T ss_dssp EEEEEBSS-CCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHH
T ss_pred EEEEEecc-CCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeecccc
Confidence 56666652 36889999999999999989998888888889999999999999999999999999888887776532110
Q ss_pred ccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECC
Q psy2148 1015 DVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG 1094 (1884)
Q Consensus 1015 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~ 1094 (1884)
...++.+....+ ....+|.+...+.....+.+|+.+.|.|.+. |.|.+.|.|+|+|
T Consensus 205 -------------~~~~~~~~~~~~---------~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~--g~p~p~i~W~~~g 260 (317)
T 2y25_A 205 -------------YAEFQRLKQAAI---------AEKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNE 260 (317)
T ss_dssp -------------HHHHHHHHHHHH---------HTTTSCEEEEBCCSEEEEETTSBBCEEEEEE--CSSCCEEEEEESS
T ss_pred -------------chhhcccCCccc---------CcCCCCcccccCCccEEEEcCCEEEEEEEEe--cCCCCEEEEEECC
Confidence 000111111100 0114566666666667888999999999997 8899999999999
Q ss_pred EeccCCCceEEEee-CcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeec
Q psy2148 1095 RPFATGSRVKTVYD-FGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAK 1149 (1884)
Q Consensus 1095 ~~l~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~ 1149 (1884)
..+..+.++.+..+ ++...|.|.++..+|+|.|+|.|.|..|..+.++.|.|..|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 261 KALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316 (317)
T ss_dssp SEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence 99998888777665 66789999999999999999999999999999999998753
No 43
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.97 E-value=6.2e-29 Score=295.05 Aligned_cols=276 Identities=21% Similarity=0.289 Sum_probs=209.1
Q ss_pred CCeEEEccCCccccccccceEEEEEEeeCCCC-CCeEEEee-cCeecCCCC-Cceeee-eCceEEEEEeeeccCCCeEEE
Q psy2148 1424 PPRFVTQIKTQDQLVEMQSTKFECQLAPVGDP-NMKVEWFL-NGKPLPHKN-RFNPIY-DFGYVAMNFGWVYPEDSGEYL 1499 (1884)
Q Consensus 1424 pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p-~~~i~W~~-~~~~l~~~~-~~~~~~-~~~~~~L~i~~~~~~d~G~Y~ 1499 (1884)
||.|...+.+. .+.+|+.++|.|.+. |.| .+.|.|++ +|..+.... ++.+.. .++...|.|.+++.+|+|.|+
T Consensus 2 ~~~v~~~p~~~-~v~~G~~v~l~C~~~--~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (291)
T 1qz1_A 2 VLQVDIVPSQG-EISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYK 78 (291)
T ss_dssp CCCEEEESSSE-EEETTCCEEEEEEES--SCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred CcceEecCCCc-eEeCCCeEEEEEEeC--CCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEE
Confidence 67777777665 488999999999986 776 69999999 888776543 333322 346679999999999999999
Q ss_pred EEEEecCcc-eEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCC
Q psy2148 1500 CRATNLYGM-DETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGE 1578 (1884)
Q Consensus 1500 c~a~n~~G~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~ 1578 (1884)
|.|.|..|. .+..+.|.|.. +|.|..
T Consensus 79 C~~~n~~g~~~~~~~~l~v~~------------------------------------------~~~~~~----------- 105 (291)
T 1qz1_A 79 CVVTAEDGTQSEATVNVKIFQ------------------------------------------KLMFKN----------- 105 (291)
T ss_dssp EEEECTTSCEEEEEEEEEEEC------------------------------------------CSEEEE-----------
T ss_pred EEEEcCCCCeeEEEEEEEeec------------------------------------------cccccC-----------
Confidence 999999864 33445555532 122222
Q ss_pred ceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEE
Q psy2148 1579 PARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQAR 1658 (1884)
Q Consensus 1579 ~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~ 1658 (1884)
.+....+.+|+.+.
T Consensus 106 ------------------------------------------------------------------~~~~~~~~~g~~v~ 119 (291)
T 1qz1_A 106 ------------------------------------------------------------------APTPQEFKEGEDAV 119 (291)
T ss_dssp ------------------------------------------------------------------CCSSEEEETTSCEE
T ss_pred ------------------------------------------------------------------CCCcccccCCCeEE
Confidence 22334556777788
Q ss_pred EEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCce--EEEEEEEEEEecccCC
Q psy2148 1659 FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK--AKCSANLVVEEKRQGG 1736 (1884)
Q Consensus 1659 l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~ 1736 (1884)
|.|.+.|.|.+.+.|++++..+......++.. ..++.|.|.++..+|+|.|+|.|.|..+. ....+.|.|..
T Consensus 120 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~----- 193 (291)
T 1qz1_A 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV-LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV----- 193 (291)
T ss_dssp ECCEEECSSCCEEEEEETTSCSSTTCCTTEEE-CTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE-----
T ss_pred EEEEeccCCCCEEEEEECCEEcccCCCceEEE-ccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec-----
Confidence 88888888888888888887765443333322 23457999999999999999999997643 33556777763
Q ss_pred CCCCCCCeEEeccC--ceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCC----CeEEeecCCeEEEEEccCCCCCC
Q psy2148 1737 RGGVVPPSFLTTIS--SAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDI----RYKTLEEDNLFTLLIIEAVVEDS 1810 (1884)
Q Consensus 1737 ~~~~~~P~~~~~~~--~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~----~~~~~~~~~~~~L~i~~~~~~d~ 1810 (1884)
+|.+...+. ...+..|+.++|.|.+.|.|.|.|.|+|+|..+.... ++.+... ...|.|.++..+|+
T Consensus 194 -----~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~ 266 (291)
T 1qz1_A 194 -----PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD--SSELTIRNVDKNDE 266 (291)
T ss_dssp -----EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTT--SCEEEECSCCGGGC
T ss_pred -----CCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCC--CcEEEEEecChhcC
Confidence 666665433 4567889999999999999999999999999997764 5544433 34899999999999
Q ss_pred EEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1811 GAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1811 G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
|.|+|.|.|..|..+.++.|.|.+
T Consensus 267 G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 267 AEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEEEeCCCceEEEEEEEEEc
Confidence 999999999999999999999975
No 44
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.97 E-value=4.8e-29 Score=296.00 Aligned_cols=277 Identities=21% Similarity=0.339 Sum_probs=210.1
Q ss_pred CCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEee-cCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEE
Q psy2148 1423 QPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFL-NGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCR 1501 (1884)
Q Consensus 1423 ~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~-~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~ 1501 (1884)
.+|.|...+.+. .+.+|+.++|.|.+. |.|. .|.|++ +|..+..+.++.+...+....|.|.+++.+|+|.|+|.
T Consensus 3 ~~p~v~~~~~~~-~v~~G~~v~l~C~~~--~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 78 (291)
T 2wim_A 3 ALLQVTISLSKV-ELSVGESKFFTCTAI--GEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 78 (291)
T ss_dssp CCCEEEESCSEE-EEETTCCEEEEEEEE--SCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCceEEEeccce-EecCCCcEEEEEEEe--CCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEE
Confidence 478888877764 589999999999997 8875 999999 78888777787777777778999999999999999999
Q ss_pred EEecCcceE-EEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCce
Q psy2148 1502 ATNLYGMDE-TRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPA 1580 (1884)
Q Consensus 1502 a~n~~G~~~-~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~ 1580 (1884)
|.|..|... ..+.|.|..+| .|...
T Consensus 79 ~~n~~g~~~~~~~~l~v~~~~------------------------------------------~~~~~------------ 104 (291)
T 2wim_A 79 ATDAKGQTQEATVVLEIYQKL------------------------------------------TFREV------------ 104 (291)
T ss_dssp EECSSSCEEEEEEEEEEECCC------------------------------------------BCCSC------------
T ss_pred EecccCceEEEEEEEEecCCc------------------------------------------ceEeC------------
Confidence 999988753 34556654322 11111
Q ss_pred EEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEE
Q psy2148 1581 RFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFE 1660 (1884)
Q Consensus 1581 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~ 1660 (1884)
+....+.+|+.+.|.
T Consensus 105 -----------------------------------------------------------------~~~~~v~~G~~v~l~ 119 (291)
T 2wim_A 105 -----------------------------------------------------------------VSPQEFKQGEDAEVV 119 (291)
T ss_dssp -----------------------------------------------------------------CCSEEEETTSCEEEC
T ss_pred -----------------------------------------------------------------CCChhhcCCCCEEEE
Confidence 122345567777777
Q ss_pred EEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceE--EEEEEEEEEecccCCCC
Q psy2148 1661 VEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA--KCSANLVVEEKRQGGRG 1738 (1884)
Q Consensus 1661 C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~ 1738 (1884)
|.+.|.|.+.+.|++++..+......+... .....|.|.++..+|+|.|+|.+.|..+.. ...+.+.|.
T Consensus 120 C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~-------- 190 (291)
T 2wim_A 120 CRVSSSPAPAVSWLYHNEEVTTISDNRFAM-LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN-------- 190 (291)
T ss_dssp CCCBCSSCCEEEEECC----CBCCCSSEEE-CTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE--------
T ss_pred EEEccCCCCEEEEEECCccccccCCceEEE-ccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEec--------
Confidence 777777888888888887665422222222 234569999999999999999999987543 345566666
Q ss_pred CCCCCeEEeccC--ceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEE
Q psy2148 1739 GVVPPSFLTTIS--SAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECV 1816 (1884)
Q Consensus 1739 ~~~~P~~~~~~~--~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 1816 (1884)
.+|.+...+. ...+.+|+.++|.|.+.|.|.|.|.|+|+|..+..+.++.+...+ ..|.|.++..+|+|.|+|.
T Consensus 191 --~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~ 266 (291)
T 2wim_A 191 --VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCR 266 (291)
T ss_dssp --BCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTT--CEEEEESCCSTTCEEEEEE
T ss_pred --cCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCc--cEEEEeeCCcccCEEEEEE
Confidence 3565554333 345778999999999999999999999999999888887765443 3899999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEec
Q psy2148 1817 AMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1817 a~N~~G~~~~~~~l~V~~~ 1835 (1884)
|.|..|..+.++.|.|.+.
T Consensus 267 a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 267 ATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp EEETTEEEEEEEEEEC---
T ss_pred EEECCCceeeeEEEEEEEe
Confidence 9999999999999999874
No 45
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.97 E-value=8.8e-29 Score=293.71 Aligned_cols=277 Identities=21% Similarity=0.378 Sum_probs=213.0
Q ss_pred CCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEee-CCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEE
Q psy2148 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFW-NGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCR 783 (1884)
Q Consensus 705 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 783 (1884)
.+|.|...+.+. .+.+|+.++|.|.+. |.| +.++|++ +|..+....++.+..++....|.|.+++.+|+|.|+|.
T Consensus 3 ~~p~v~~~~~~~-~v~~G~~v~l~C~~~--~~p-~~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 78 (291)
T 2wim_A 3 ALLQVTISLSKV-ELSVGESKFFTCTAI--GEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 78 (291)
T ss_dssp CCCEEEESCSEE-EEETTCCEEEEEEEE--SCC-SEEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCceEEEeccce-EecCCCcEEEEEEEe--CCC-CceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEE
Confidence 356677766654 789999999999998 466 4999999 88888888888888888888999999999999999999
Q ss_pred EEecCceEE-EEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEE
Q psy2148 784 AYNDYGEAV-TSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIIL 862 (1884)
Q Consensus 784 a~N~~g~~~-~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~ 862 (1884)
|.|..|... ..+.|.|..
T Consensus 79 ~~n~~g~~~~~~~~l~v~~------------------------------------------------------------- 97 (291)
T 2wim_A 79 ATDAKGQTQEATVVLEIYQ------------------------------------------------------------- 97 (291)
T ss_dssp EECSSSCEEEEEEEEEEEC-------------------------------------------------------------
T ss_pred EecccCceEEEEEEEEecC-------------------------------------------------------------
Confidence 999888753 344444422
Q ss_pred eecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEEee
Q psy2148 863 ESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTP 942 (1884)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~ 942 (1884)
+|.+...+.+..+.+|+.+.|.|.+.
T Consensus 98 -----------------------------------------------------~~~~~~~~~~~~v~~G~~v~l~C~~~- 123 (291)
T 2wim_A 98 -----------------------------------------------------KLTFREVVSPQEFKQGEDAEVVCRVS- 123 (291)
T ss_dssp -----------------------------------------------------CCBCCSCCCSEEEETTSCEEECCCCB-
T ss_pred -----------------------------------------------------CcceEeCCCChhhcCCCCEEEEEEEc-
Confidence 23333444566789999999999998
Q ss_pred CCCCCcEEEEeeCCEEccC--CCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeE--EEEEEEEEEeeccccccc
Q psy2148 943 TNDPSMTVEWFHNGKALSA--GSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEA--TTSCKLTVKGRQGIDVEP 1018 (1884)
Q Consensus 943 ~~~P~~~v~W~~~g~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~~~~~~~~~p 1018 (1884)
+.|.+.|+|++++..+.. ..++.+..++ .|.|.++..+|+|.|+|.|.|..+.. ...+.|.|..+|.+.
T Consensus 124 -~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~--- 196 (291)
T 2wim_A 124 -SSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAIS--- 196 (291)
T ss_dssp -CSSCCEEEEECC----CBCCCSSEEECTTS---CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCB---
T ss_pred -cCCCCEEEEEECCccccccCCceEEEccCC---CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccc---
Confidence 678889999999998864 4555554333 59999999999999999999987543 345566676544322
Q ss_pred chhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecC-CCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEec
Q psy2148 1019 QVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQ-DNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPF 1097 (1884)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l 1097 (1884)
.... ....+.+|+.+.|.|.+. |.|.+.|.|+++|..+
T Consensus 197 ---------------------------------------~~~~~~~~~~~~g~~~~l~C~~~--g~p~p~v~W~~~g~~~ 235 (291)
T 2wim_A 197 ---------------------------------------MPQKSFNATAERGEEMTFSCRAS--GSPEPAISWFRNGKLI 235 (291)
T ss_dssp ---------------------------------------CSCSEEECCSSSCCEEEEECBCC--CBSCCEEEEEETTEEC
T ss_pred ---------------------------------------cCcccccceecCCCeEEEEEEee--cCCCCeEEEEECCEEC
Confidence 1111 125678999999999997 7899999999999999
Q ss_pred cCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeecc
Q psy2148 1098 ATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKH 1150 (1884)
Q Consensus 1098 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~ 1150 (1884)
..+.++..... ...|.|.++..+|+|.|+|.|.|..|.++.++.|.|..++
T Consensus 236 ~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 236 EENEKYILKGS--NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp CCTTTEEECST--TCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred cCCccEEEcCC--ccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence 88777654332 3479999999999999999999999999999999988654
No 46
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.96 E-value=8.1e-29 Score=313.09 Aligned_cols=388 Identities=13% Similarity=0.092 Sum_probs=239.8
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEcc-----------------CCCcEEEEee--CCeEEEEEcc
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKALS-----------------AGSRIKTIND--FGFVILEIND 980 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i~-----------------~~~~~~~~~~--~~~~~L~I~~ 980 (1884)
.+..+.+.+|++++|.|.+.+...+.+.|.|||+ |..+. ...|+.+..+ .+...|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (444)
T 1igt_B 6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR 85 (444)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence 3456789999999999999842223578999985 33210 2347776543 3567899999
Q ss_pred CCCCCCeEEEEEEEcCCeeE---EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCcee
Q psy2148 981 VYLRDSGLYTCKATNKHGEA---TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFT 1057 (1884)
Q Consensus 981 ~~~~D~G~Y~C~a~N~~G~~---~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1057 (1884)
++.+|+|.|+|.|.|..|.. ...+.|.|...+ ..+|.+.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~~P~i~ 127 (444)
T 1igt_B 86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK--------------------------------------TTAPSVY 127 (444)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC--------------------------------------CBCCEEE
T ss_pred CCHHHCEEEEEEEecCCcccccccCcEEEEecCCC--------------------------------------CCCCcee
Confidence 99999999999999987642 234577775311 0233333
Q ss_pred eecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeC---cEEEEEEcccCcCCcEEEEEEEEc
Q psy2148 1058 SQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDF---GFISLDMDYVYARDSGEYICRATN 1133 (1884)
Q Consensus 1058 ~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n 1133 (1884)
.... ...+.+|+.++|.|.+.+ ..|.+ .|.|+|++..+...........+ ....|.|.++..+| |.|+|.|.|
T Consensus 128 ~~~~-~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n 204 (444)
T 1igt_B 128 PLAP-VCGDTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAH 204 (444)
T ss_dssp EECC-CSSCCCSSCEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEE
T ss_pred Eecc-cccCCCCCcEEEEEEEcc-eeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEe
Confidence 2221 234578999999999983 24665 99999998874211000000011 12469999999899 999999999
Q ss_pred CCeeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhh
Q psy2148 1134 KWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQ 1213 (1884)
Q Consensus 1134 ~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 1213 (1884)
..|.......+.+..+... . . . . +
T Consensus 205 ~~~~~~~~~~i~~~~~~~~----------------------~-~--~--------~---------------~-------- 228 (444)
T 1igt_B 205 PASSTKVDKKIEPRGPTIK----------------------P-C--P--------P---------------C-------- 228 (444)
T ss_dssp TTTTEEEEEECCCCCCSCC----------------------C-C--C--------C---------------C--------
T ss_pred CCCCcceEEEeccCCCCcc----------------------c-C--C--------c---------------c--------
Confidence 9997654444332110000 0 0 0 0 0
Q ss_pred hhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCee-Eeecceee-eecCCcEEEEEEEeec
Q psy2148 1214 KERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRF-ITEIESVT-VQEAEPVRFETRVEPR 1291 (1884)
Q Consensus 1214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~-v~~g~~v~l~c~v~~~ 1291 (1884)
.+ .......+|.+ ...+.... +.+|+.++|.|.+.+.
T Consensus 229 -------------------------------------~~----~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~ 267 (444)
T 1igt_B 229 -------------------------------------KC----PAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDV 267 (444)
T ss_dssp -------------------------------------SC----CCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEE
T ss_pred -------------------------------------cc----CCcccCCCceEEecCCchhheeecCCCcEEEEEEeec
Confidence 00 00001224554 33333333 5899999999999975
Q ss_pred C--CCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeE
Q psy2148 1292 V--DPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKA 1369 (1884)
Q Consensus 1292 ~--~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~ 1369 (1884)
. .+.+.+.|+|++..+....... . .............|.|.+++.+|+|.|+|.|.|..|......
T Consensus 268 ~~~p~~~~v~W~k~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~ 335 (444)
T 1igt_B 268 SEDDPDVQISWFVNNVEVHTAQTQT-----------H-REDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIER 335 (444)
T ss_dssp CTTCCCCEEEEEETTEECSSTTCBC-----------C-EEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEE
T ss_pred ccCCCCeEEEEEECCccccCccccc-----------c-eeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEE
Confidence 3 3457999999997664331100 0 000000012345799999999999999999999988663333
Q ss_pred EEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEE
Q psy2148 1370 TISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQL 1449 (1884)
Q Consensus 1370 ~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~ 1449 (1884)
.+.+. . ....||.+...+.....+..|+ ++|.|.+
T Consensus 336 ~v~~~--~------------------------------------------~~~~~P~v~~~~~~~~~~~~~~-~~L~C~~ 370 (444)
T 1igt_B 336 TISKP--K------------------------------------------GSVRAPQVYVLPPPEEEMTKKQ-VTLTCMV 370 (444)
T ss_dssp EEECC--C------------------------------------------CCCBCCEEEEECCCGGGTTSSE-EEEEEEE
T ss_pred EEecc--C------------------------------------------CCCCCCEEEEeCCChHHccCCe-EEEEEEE
Confidence 33210 0 0123566654444433455555 9999999
Q ss_pred eeCC-CCCC-eEEEeecCeecCCCCCcee-eeeCce----EEEEEeeeccCCCeEEEEEEEecC
Q psy2148 1450 APVG-DPNM-KVEWFLNGKPLPHKNRFNP-IYDFGY----VAMNFGWVYPEDSGEYLCRATNLY 1506 (1884)
Q Consensus 1450 ~~~g-~p~~-~i~W~~~~~~l~~~~~~~~-~~~~~~----~~L~i~~~~~~d~G~Y~c~a~n~~ 1506 (1884)
. | .|.+ .|+|+|+|..+........ ...++. ..|.|.....+|.|.|+|.|.|..
T Consensus 371 ~--g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~ 432 (444)
T 1igt_B 371 T--DFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG 432 (444)
T ss_dssp E--EEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred E--eeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence 7 7 5655 9999999998843211111 122332 346677667778999999999975
No 47
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.96 E-value=4.7e-29 Score=315.27 Aligned_cols=398 Identities=10% Similarity=0.048 Sum_probs=228.7
Q ss_pred EeecceeeeecCCcEEEEEEEeecCCCcceEEEecccc--cccccccc---cceEEEeeccceeeeeeeeeeeeceEEEE
Q psy2148 1268 ITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTA--FFFPFINI---STAFLIFNFCLHAVIFSHPIFDLGFVSLD 1342 (1884)
Q Consensus 1268 ~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 1342 (1884)
+..+..+.+.+|+.++|.|.+.+...+...+.|++... .+...... ............|..... ....+..+|.
T Consensus 4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~~~L~ 82 (444)
T 1igt_B 4 LQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISR-DNAKNTLYLQ 82 (444)
T ss_dssp EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEE-ETTTTEEEEE
T ss_pred EecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEE-eCCCCeEEEE
Confidence 34456788999999999999986422367899998642 11100000 000000000011211111 0123467899
Q ss_pred EeeecccCceEEEEEEEccccc---eeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCc
Q psy2148 1343 IDYVYPEDQGEYVCRAYNDHGE---AFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEP 1419 (1884)
Q Consensus 1343 I~~~~~~d~G~Y~C~a~n~~g~---~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1419 (1884)
|.+++.+|+|.|+|.|.|..+. ....+.|.|...+
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~------------------------------------------ 120 (444)
T 1igt_B 83 MSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK------------------------------------------ 120 (444)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC------------------------------------------
T ss_pred ECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCC------------------------------------------
Confidence 9999999999999999987654 2233566664211
Q ss_pred ccCCCCeEEEccCCccccccccceEEEEEEeeCC-CCCC-eEEEeecCeecCCCCCceeeeeCc----eEEEEEeeeccC
Q psy2148 1420 EKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVG-DPNM-KVEWFLNGKPLPHKNRFNPIYDFG----YVAMNFGWVYPE 1493 (1884)
Q Consensus 1420 ~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g-~p~~-~i~W~~~~~~l~~~~~~~~~~~~~----~~~L~i~~~~~~ 1493 (1884)
..+|.+...... ..+.+|+.++|.|.+. | .|.| .|+|++++..+....... ....+ ...|.|.++..+
T Consensus 121 --~~~P~i~~~~~~-~~~~~g~~v~L~C~~~--g~~P~p~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~ 194 (444)
T 1igt_B 121 --TTAPSVYPLAPV-CGDTTGSSVTLGCLVK--GYFPEPVTLTWNSGSLSSGVHTFPA-VLQSDLYTLSSSVTVTSSTWP 194 (444)
T ss_dssp --CBCCEEEEECCC-SSCCCSSCEEEEEEEE--EEBSSCCEEEEGGGTBCTTEEECCC-EEETTEEEEEEEEEECSTTTT
T ss_pred --CCCCceeEeccc-ccCCCCCcEEEEEEEc--ceeCCCcEEEEecCCCCCCeEecCc-cccCCcEEEEEEEEEchhhcC
Confidence 123444322222 2357899999999997 6 4776 999999987642110001 11112 246889999989
Q ss_pred CCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeE-ecCCccc
Q psy2148 1494 DSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVF-VSQPEAQ 1572 (1884)
Q Consensus 1494 d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~-~~~~~~~ 1572 (1884)
| |.|+|.|.|..|.......+.+.+...... ... .........+|.+ ...+...
T Consensus 195 d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~-----------------------~~~-~~~~~~~~~~p~v~~~~p~~~ 249 (444)
T 1igt_B 195 S-QSITCNVAHPASSTKVDKKIEPRGPTIKPC-----------------------PPC-KCPAPNLLGGPSVFIFPPKIK 249 (444)
T ss_dssp T-SCCEEEEEETTTTEEEEEECCCCCCSCCCC-----------------------CCC-SCCCSCCCCCCEEEEECCCHH
T ss_pred C-CeEEEEEEeCCCCcceEEEeccCCCCcccC-----------------------Ccc-ccCCcccCCCceEEecCCchh
Confidence 9 999999999998765554443321100000 000 0000011223443 3333222
Q ss_pred c-cccCCceEEEEEEecCC----CCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCC
Q psy2148 1573 K-VQEGEPARFCTRVTGYP----RPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQ 1647 (1884)
Q Consensus 1573 ~-v~~g~~~~l~C~~~g~p----~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1647 (1884)
. +.+|++++|.|.+.|.| .+.++|+++|..+
T Consensus 250 ~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~-------------------------------------------- 285 (444)
T 1igt_B 250 DVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEV-------------------------------------------- 285 (444)
T ss_dssp HHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEEC--------------------------------------------
T ss_pred heeecCCCcEEEEEEeecccCCCCeEEEEEECCccc--------------------------------------------
Confidence 2 45666666666666652 2356666665443
Q ss_pred ceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEe-----CceeEEEEcccccCCCeEEEEEEEeCCceEE
Q psy2148 1648 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-----STKSILIMRQVFMEDSGVFAVIAENRGGKAK 1722 (1884)
Q Consensus 1648 ~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~ 1722 (1884)
........... ...++|.|.++..+|+|.|+|.|.|..|...
T Consensus 286 ---------------------------------~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 332 (444)
T 1igt_B 286 ---------------------------------HTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAP 332 (444)
T ss_dssp ---------------------------------SSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSC
T ss_pred ---------------------------------cCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCc
Confidence 21111000000 1235699999999999999999999988763
Q ss_pred EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EEEEEeCCEecCCCC--CeEEeecCC--
Q psy2148 1723 CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLKNGKKIIPDI--RYKTLEEDN-- 1796 (1884)
Q Consensus 1723 ~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~k~~~~l~~~~--~~~~~~~~~-- 1796 (1884)
....+.+.... ..+|.+...+.......++.++|.|.+.| .|.+ .|+|+|+|..+.... +.....++.
T Consensus 333 ~~~~v~~~~~~------~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~ 406 (444)
T 1igt_B 333 IERTISKPKGS------VRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYF 406 (444)
T ss_dssp EEEEEECCCCC------CBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEE
T ss_pred eEEEEeccCCC------CCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEE
Confidence 33333220000 15788775554332234445999999999 5666 899999999884321 111112222
Q ss_pred -eEEEEEccCCCCCCEEEEEEEEeCCe
Q psy2148 1797 -LFTLLIIEAVVEDSGAYECVAMNNAG 1822 (1884)
Q Consensus 1797 -~~~L~i~~~~~~d~G~Y~C~a~N~~G 1822 (1884)
...|.|.....+|.|.|+|.|.|..-
T Consensus 407 ~~s~l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 407 MYSKLRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp EEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred EEEEEEEChHHhcCCCeEEEEEECCCc
Confidence 13567777777789999999999863
No 48
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.96 E-value=2.5e-28 Score=289.80 Aligned_cols=276 Identities=20% Similarity=0.306 Sum_probs=209.7
Q ss_pred CCeeeecCCCccccCCCCcEEEEEEEeecCCC-CCeEEEee-CCccCCCC-CCeEEEe-eCCEEEEEEcccCcCCCeEEE
Q psy2148 706 APVFTVPLSNIDDLREGENAHFEARLTPTDDP-KLKVEWFW-NGKPMKTG-SRFRTFC-DFGFVILEISPVYPEDCGQYS 781 (1884)
Q Consensus 706 ~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~k-~g~~l~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~ 781 (1884)
++.|.+.+.+. .+.+|+.++|.|.+.+ .| .+.++|++ +|..+... .++.+.. ++....|.|.+++.+|+|.|+
T Consensus 2 ~~~v~~~p~~~-~v~~G~~v~l~C~~~~--~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (291)
T 1qz1_A 2 VLQVDIVPSQG-EISVGESKFFLCQVAG--DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYK 78 (291)
T ss_dssp CCCEEEESSSE-EEETTCCEEEEEEESS--CCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred CcceEecCCCc-eEeCCCeEEEEEEeCC--CCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEE
Confidence 34555655554 6899999999999984 44 68999999 88887643 4555543 456789999999999999999
Q ss_pred EEEEecCce-EEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccce
Q psy2148 782 CRAYNDYGE-AVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSI 860 (1884)
Q Consensus 782 C~a~N~~g~-~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~ 860 (1884)
|.|.|..|. .+..+.|.|..
T Consensus 79 C~~~n~~g~~~~~~~~l~v~~----------------------------------------------------------- 99 (291)
T 1qz1_A 79 CVVTAEDGTQSEATVNVKIFQ----------------------------------------------------------- 99 (291)
T ss_dssp EEEECTTSCEEEEEEEEEEEC-----------------------------------------------------------
T ss_pred EEEEcCCCCeeEEEEEEEeec-----------------------------------------------------------
Confidence 999998864 34445444432
Q ss_pred EEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEE
Q psy2148 861 ILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRL 940 (1884)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v 940 (1884)
+|.|...+....+.+|+.+.|.|.+
T Consensus 100 -------------------------------------------------------~~~~~~~~~~~~~~~g~~v~l~C~~ 124 (291)
T 1qz1_A 100 -------------------------------------------------------KLMFKNAPTPQEFKEGEDAVIVCDV 124 (291)
T ss_dssp -------------------------------------------------------CSEEEECCSSEEEETTSCEEECCEE
T ss_pred -------------------------------------------------------cccccCCCCcccccCCCeEEEEEEe
Confidence 3444555566788999999999999
Q ss_pred eeCCCCCcEEEEeeCCEEccCC--CcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeE--EEEEEEEEEeeccccc
Q psy2148 941 TPTNDPSMTVEWFHNGKALSAG--SRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEA--TTSCKLTVKGRQGIDV 1016 (1884)
Q Consensus 941 ~~~~~P~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~~~~~~~~ 1016 (1884)
. +.|.+.|+|+|+|..+... .++....++ .|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|..+|.+..
T Consensus 125 ~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~ 199 (291)
T 1qz1_A 125 V--SSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQA 199 (291)
T ss_dssp E--CSSCCEEEEEETTSCSSTTCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEE
T ss_pred c--cCCCCEEEEEECCEEcccCCCceEEEccCC---cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccc
Confidence 8 6788899999999988543 344443332 69999999999999999999976443 4566777775544321
Q ss_pred ccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEe
Q psy2148 1017 EPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRP 1096 (1884)
Q Consensus 1017 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~ 1096 (1884)
.+ ......+.+|+.+.|.|.+. |.|.+.|.|+++|..
T Consensus 200 ~~-----------------------------------------~~~~~~~~~g~~v~l~C~~~--g~p~p~i~W~~~g~~ 236 (291)
T 1qz1_A 200 RQ-----------------------------------------SIVNATANLGQSVTLVCDAD--GFPEPTMSWTKDGEP 236 (291)
T ss_dssp SC-----------------------------------------SEEEEETTSCCCEEEEEEEE--EESCCEEEEEETTEE
T ss_pred cc-----------------------------------------cccccccccCceEEEEEEEE--EeCCCcEEEEECCEE
Confidence 10 00124677899999999998 788899999999999
Q ss_pred ccCCC----ceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEee
Q psy2148 1097 FATGS----RVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148 (1884)
Q Consensus 1097 l~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~ 1148 (1884)
+..+. ++.. ......|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 237 ~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 237 IENEEEDDEKHIF--SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp CCCC--CCSSEEE--CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CcCCCCCCcceEE--cCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 98764 3332 23335899999999999999999999999999999999874
No 49
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.96 E-value=5.5e-29 Score=299.04 Aligned_cols=296 Identities=16% Similarity=0.234 Sum_probs=216.5
Q ss_pred ccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEEEEecCceEEEEEEE
Q psy2148 718 DLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSASM 797 (1884)
Q Consensus 718 ~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l 797 (1884)
.+.+|+.+.|.|.+. .+.|.+.++|+|+|.++..+.++.+..+++...|.|.+++.+|+|.|+|.|.|..|... ++.|
T Consensus 12 ~v~eg~~v~l~~~~~-~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l 89 (312)
T 2y23_A 12 NVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLI 89 (312)
T ss_dssp EECTTCCEEEEEECS-SCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEE
T ss_pred EEecCCeEEEEEEEe-CCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEE
Confidence 578999999999987 57899999999999999988999998888889999999999999999999999888554 4444
Q ss_pred EEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEeecCCCCccccccee
Q psy2148 798 KVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEGTIDKI 877 (1884)
Q Consensus 798 ~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 877 (1884)
.|.....+.
T Consensus 90 ~v~~~~~~~----------------------------------------------------------------------- 98 (312)
T 2y23_A 90 DEEELKRLL----------------------------------------------------------------------- 98 (312)
T ss_dssp CHHHHHHHH-----------------------------------------------------------------------
T ss_pred EEeeeeeee-----------------------------------------------------------------------
Confidence 432110000
Q ss_pred eecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecC-CceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC
Q psy2148 878 AELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTP-TDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG 956 (1884)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g 956 (1884)
. +. ....+|.+...+ .+..+.+|+.+.|.|.+.+ +.|.+.++|+|+|
T Consensus 99 ----------------~--------------~~-~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~p~~~v~W~~~~ 146 (312)
T 2y23_A 99 ----------------A--------------LS-HEHKFPTVPVKSELAVEILEKGQVRFWMQAEK-LSGNAKVNYIFNE 146 (312)
T ss_dssp ----------------H--------------HH-HHHHSCBCCEEEEEEEEECSSSCEEEEEEESC-CCSSCEEEEEETT
T ss_pred ----------------c--------------cc-ccCCCCccccccCCceEEeeCCCEEEEEEEEe-CCCCCEEEEEECC
Confidence 0 00 000123333322 3678899999999999973 5688999999999
Q ss_pred EEccCCCcEEEEee--CCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHH
Q psy2148 957 KALSAGSRIKTIND--FGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKL 1034 (1884)
Q Consensus 957 ~~i~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~ 1034 (1884)
..+..+.++.+..+ .+.+.|.|.+++.+|+|.|+|.|.|..+.. ...+.+.+...... ... ..++..
T Consensus 147 ~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~~~~~~~~~-------~~~--~~~~~~ 215 (312)
T 2y23_A 147 KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN--HSTVVLVGDVFKKL-------QKE--AEFQRQ 215 (312)
T ss_dssp EEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEE--EEEEEECTHHHHHH-------HHH--HHHHHH
T ss_pred EECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceE--EEEEEEcchhhhhh-------ccc--cccccc
Confidence 99999888877654 567789999999999999999999865444 33444421110000 000 000000
Q ss_pred HHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeCcEEE
Q psy2148 1035 EEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDFGFIS 1113 (1884)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~~~~ 1113 (1884)
. . ....+|.|...+. ..+.+|+.+.|.|.+. +.|.+ .|.|+|+|+.+..+.++.+. ++...
T Consensus 216 ~---~---------~~~~~p~~~~~~~--~~v~~G~~~~l~C~~~--~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~ 277 (312)
T 2y23_A 216 E---W---------IRKQGPHFVEYLS--WEVTGECNVLLKCKVA--NIKKETHIVWYKDEREISVDEKHDFK--DGICT 277 (312)
T ss_dssp H---H---------HHHHSSEEEEEEE--EEEETTTEEEEEEEEE--SCCSSCEEEEEETTEEEEEECCC------CEEE
T ss_pred c---h---------hhccCCceeecce--EEEeCCCEEEEEEEEc--CCCCCCEEEEeeCCEECCCCCcEEEE--CCEEE
Confidence 0 0 0003566665443 5678999999999998 77777 99999999999866665544 45579
Q ss_pred EEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1114 LDMDYVYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1114 l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
|.|.++..+|+|.|+|.|.|.+|.+..++.|.++
T Consensus 278 L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 278 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred EEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 9999999999999999999999999999988764
No 50
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=293.28 Aligned_cols=284 Identities=17% Similarity=0.230 Sum_probs=214.1
Q ss_pred ccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEE
Q psy2148 1436 QLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAIL 1515 (1884)
Q Consensus 1436 ~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l 1515 (1884)
.+.+|+.+.|.|.+. .|.|.+.|.|+|++..+..+.++.+...++...|.|.+++.+|+|.|+|.|.|..|... ++.|
T Consensus 12 ~v~eg~~v~l~~~~~-~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l 89 (312)
T 2y23_A 12 NVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLI 89 (312)
T ss_dssp EECTTCCEEEEEECS-SCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEE
T ss_pred EEecCCeEEEEEEEe-CCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEE
Confidence 477999999999986 68999999999999999988888888888888999999999999999999999988544 5555
Q ss_pred EEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEEEEEecCCCCeEE
Q psy2148 1516 KTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVM 1595 (1884)
Q Consensus 1516 ~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~ 1595 (1884)
.|...+. +...... ..+|
T Consensus 90 ~v~~~~~----------------~~~~~~~--------------~~~p-------------------------------- 107 (312)
T 2y23_A 90 DEEELKR----------------LLALSHE--------------HKFP-------------------------------- 107 (312)
T ss_dssp CHHHHHH----------------HHHHHHH--------------HHSC--------------------------------
T ss_pred EEeeeee----------------eeccccc--------------CCCC--------------------------------
Confidence 5421000 0000000 0001
Q ss_pred EEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeec-CCceeecCCCeEEEEEEEe-ccCCCeEEE
Q psy2148 1596 WLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKK-IQPCRAFEQDQARFEVEFD-GDPLPTIKW 1673 (1884)
Q Consensus 1596 W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~G~~~~l~C~~~-g~p~~~i~W 1673 (1884)
.+... .....+.+|+.+.|.|.+. |.|.+.++|
T Consensus 108 ---------------------------------------------~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W 142 (312)
T 2y23_A 108 ---------------------------------------------TVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142 (312)
T ss_dssp ---------------------------------------------BCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEE
T ss_pred ---------------------------------------------ccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEE
Confidence 11111 1145678999999999999 899999999
Q ss_pred EeCCeecCCCCCeEEEEe--CceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEeccc-----------CCCCCC
Q psy2148 1674 FREDFPITSSPDFQIHTF--STKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQ-----------GGRGGV 1740 (1884)
Q Consensus 1674 ~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~-----------~~~~~~ 1740 (1884)
++++..+....++.+... ....+|.|.++..+|+|.|+|.|.|..+.. ...+.+....- ......
T Consensus 143 ~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (312)
T 2y23_A 143 IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN--HSTVVLVGDVFKKLQKEAEFQRQEWIRK 220 (312)
T ss_dssp EETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEE--EEEEEECTHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceE--EEEEEEcchhhhhhcccccccccchhhc
Confidence 999999988887777765 445679999999999999999998754443 33344321000 000000
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCc-EEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.+|.|...+. ..+.+|+.++|.|.+.|.|.| .|+|+|+|..+..+.++.+. ++...|.|.++..+|+|.|+|.|.|
T Consensus 221 ~~p~~~~~~~-~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N 297 (312)
T 2y23_A 221 QGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKD 297 (312)
T ss_dssp HSSEEEEEEE-EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEES
T ss_pred cCCceeecce-EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEc
Confidence 3577775444 788999999999999999998 99999999999877777665 4456999999999999999999999
Q ss_pred CCeeEEEEEEEEEE
Q psy2148 1820 NAGEARCEAELVVQ 1833 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~ 1833 (1884)
..|....+++|+|+
T Consensus 298 ~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 298 DRGKDKSRLKLVDE 311 (312)
T ss_dssp TTCCEEEEEEECSC
T ss_pred CCCceeeeeEEEec
Confidence 99999999999874
No 51
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.96 E-value=9.3e-28 Score=304.39 Aligned_cols=382 Identities=13% Similarity=0.134 Sum_probs=232.4
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCC--CcEEEEeeC--CEE---c--------------cCCCcEEEEee--CCeEEEEE
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDP--SMTVEWFHN--GKA---L--------------SAGSRIKTIND--FGFVILEI 978 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P--~~~v~W~~~--g~~---i--------------~~~~~~~~~~~--~~~~~L~I 978 (1884)
.+..+.+.+|++++|.|.+. +.| .+.|.|+|+ |.. + ....|+.+..+ ++.+.|.|
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (457)
T 1hzh_H 6 QSGAEVKKPGASVKVSCQAS--GYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL 83 (457)
T ss_dssp ECCCEEECTTCCEEECEEEE--SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred cCCceEEcCCCCEEEEEEec--CccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEE
Confidence 34567899999999999998 444 678999984 321 1 11357776554 45678999
Q ss_pred ccCCCCCCeEEEEEEEcCCe------------eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCC
Q psy2148 979 NDVYLRDSGLYTCKATNKHG------------EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIP 1046 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~~G------------~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1884)
.+++.+|+|.|+|.|.|..| .....+.|.|...+.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------- 130 (457)
T 1hzh_H 84 RSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAST--------------------------------- 130 (457)
T ss_dssp CSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCC---------------------------------
T ss_pred CCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCC---------------------------------
Confidence 99999999999999999876 223455777753110
Q ss_pred CCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceEEEeeCc----EEEEEEcccCc
Q psy2148 1047 DEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVKTVYDFG----FISLDMDYVYA 1121 (1884)
Q Consensus 1047 ~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~ 1121 (1884)
.+|.+..... ...+.+|+.++|.|.+.+ ..|. +.|.|+|+|..+...........++ ...|.|.++..
T Consensus 131 -----~~P~i~~~~~-~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~ 203 (457)
T 1hzh_H 131 -----KGPSVFPLAP-SSKSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL 203 (457)
T ss_dssp -----BCCEEEEECC-CSCCCTTCCEEEEEEEES-BBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGG
T ss_pred -----CCCeEEecCc-cccccCCCcEEEEEEEeE-EeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEeccccc
Confidence 2343332222 244679999999999982 2364 8999999997653211111111222 24799999999
Q ss_pred CCcEEEEEEEEcCCeeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhccccc
Q psy2148 1122 RDSGEYICRATNKWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQ 1201 (1884)
Q Consensus 1122 ~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1201 (1884)
+| |.|+|.|.|..|.......+.+...+......
T Consensus 204 ~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~--------------------------------------------- 237 (457)
T 1hzh_H 204 GT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCP--------------------------------------------- 237 (457)
T ss_dssp GT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCC---------------------------------------------
T ss_pred CC-ceEEEEEEeCCCCcceeEEecccCCCcccccC---------------------------------------------
Confidence 99 99999999998876554444332111000000
Q ss_pred ccccccchhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCee-Eeecceee-eecC
Q psy2148 1202 SAWYDSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRF-ITEIESVT-VQEA 1279 (1884)
Q Consensus 1202 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~-v~~g 1279 (1884)
. ........+|.+ ...+.... +.+|
T Consensus 238 ----------------------------------------------------~-~~~~~~~~~p~v~~~~p~~~~~~~~G 264 (457)
T 1hzh_H 238 ----------------------------------------------------P-CPAPELLGGPSVFLFPPKPKDTLMIS 264 (457)
T ss_dssp ----------------------------------------------------S-CCCCCCSSSCEEEEECCCHHHHHCTT
T ss_pred ----------------------------------------------------C-CCCccccCCceEEeECcCchhhcccC
Confidence 0 000001123444 33333332 6789
Q ss_pred CcEEEEEEEeecCCC--cceEEEecccccccccccccceEEEeeccceeeeeeeeeeeece----EEEEEeeecccCceE
Q psy2148 1280 EPVRFETRVEPRVDP--RLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGF----VSLDIDYVYPEDQGE 1353 (1884)
Q Consensus 1280 ~~v~l~c~v~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~L~I~~~~~~d~G~ 1353 (1884)
+.++|.|.+.+...+ ...+.|+|++..+..... . .......+. ..|.|.....+|+|.
T Consensus 265 ~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~-------------~---~~~~~~~g~~~~~~~l~i~~~d~~d~G~ 328 (457)
T 1hzh_H 265 RTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT-------------K---PREEQYNSTYRVVSVLTVLHQDWLNGKE 328 (457)
T ss_dssp SCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEE-------------E---EEEECTTSCEEEEEEECCCHHHHHHTCC
T ss_pred CceEEEEEEEcccCCCCceEEEEEeCCcccccccc-------------c---cceecCCCcEEEEEEEEECHHHccCCCc
Confidence 999999999864221 248999999986643210 0 000011121 123333333444999
Q ss_pred EEEEEEccccceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCC
Q psy2148 1354 YVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKT 1433 (1884)
Q Consensus 1354 Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~ 1433 (1884)
|+|.|.|..+....+..+.+ .. ....+|.+...+..
T Consensus 329 Y~C~a~n~~~~~~~~~~v~~--~~------------------------------------------~~~~~P~v~~~~~~ 364 (457)
T 1hzh_H 329 YKCKVSNKALPAPIEKTISK--AK------------------------------------------GQPREPQVYTLPPS 364 (457)
T ss_dssp EEEEEECTTSSSCEEEEECC--CC------------------------------------------CCCBCCEEEEECCC
T ss_pred EEEEEeCCCCCCcceEEEEc--cc------------------------------------------CCCCCCeEEEECCC
Confidence 99999987665433332321 00 01235666555544
Q ss_pred ccccccccceEEEEEEeeCCCCC--CeEEEeecCeecCCCCCcee-eeeCce----EEEEEeeeccCCCeEEEEEEEecC
Q psy2148 1434 QDQLVEMQSTKFECQLAPVGDPN--MKVEWFLNGKPLPHKNRFNP-IYDFGY----VAMNFGWVYPEDSGEYLCRATNLY 1506 (1884)
Q Consensus 1434 ~~~v~~g~~~~l~C~~~~~g~p~--~~i~W~~~~~~l~~~~~~~~-~~~~~~----~~L~i~~~~~~d~G~Y~c~a~n~~ 1506 (1884)
...+..|+ +.|.|.+. |.|+ +.|+|+|||..+........ ...++. ..|.|.....+|.|.|+|.|.|..
T Consensus 365 ~~~~~~~~-~~l~C~~~--g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~ 441 (457)
T 1hzh_H 365 RDELTKNQ-VSLTCLVK--GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 441 (457)
T ss_dssp GGGGGSSE-EEEEEEEE--EEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred ccccCCCc-EEEEEEEE--eEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECC
Confidence 44456666 99999997 7544 48999999999864322211 122332 345566565678999999999975
Q ss_pred c
Q psy2148 1507 G 1507 (1884)
Q Consensus 1507 G 1507 (1884)
-
T Consensus 442 l 442 (457)
T 1hzh_H 442 L 442 (457)
T ss_dssp S
T ss_pred C
Confidence 3
No 52
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.96 E-value=5e-28 Score=306.92 Aligned_cols=402 Identities=9% Similarity=0.060 Sum_probs=233.8
Q ss_pred eecceeeeecCCcEEEEEEEeecCCCcceEEEeccccccccccccc-----ceEEEeeccceeeeeeeeeeeeceEEEEE
Q psy2148 1269 TEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINIS-----TAFLIFNFCLHAVIFSHPIFDLGFVSLDI 1343 (1884)
Q Consensus 1269 ~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~L~I 1343 (1884)
..+..+.+.+|++++|.|.+.+.......+.|+|......+....+ ...........|..... ....+...|.|
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~~~L~I 83 (457)
T 1hzh_H 5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTA-DTSANTAYMEL 83 (457)
T ss_dssp EECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEE-ETTTTEEEEEE
T ss_pred ecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEE-eCCCCEEEEEE
Confidence 3455678999999999999986422267899998532111100000 00000000011111110 01235678999
Q ss_pred eeecccCceEEEEEEEcccc------------ceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccc
Q psy2148 1344 DYVYPEDQGEYVCRAYNDHG------------EAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYL 1411 (1884)
Q Consensus 1344 ~~~~~~d~G~Y~C~a~n~~g------------~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1411 (1884)
.+++.+|+|.|+|.|.|..| .....+.|.|...+
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---------------------------------- 129 (457)
T 1hzh_H 84 RSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAS---------------------------------- 129 (457)
T ss_dssp CSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCC----------------------------------
T ss_pred CCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCC----------------------------------
Confidence 99999999999999999876 22244567665321
Q ss_pred cCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCC-CC-CeEEEeecCeecCCCCCceeeeeCc----eEEE
Q psy2148 1412 TEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGD-PN-MKVEWFLNGKPLPHKNRFNPIYDFG----YVAM 1485 (1884)
Q Consensus 1412 ~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~-p~-~~i~W~~~~~~l~~~~~~~~~~~~~----~~~L 1485 (1884)
..+|.+...... ..+.+|+.++|.|.+. |. |. +.|.|+|++..+...........++ ...|
T Consensus 130 ----------~~~P~i~~~~~~-~~~~~g~~v~L~C~~~--g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L 196 (457)
T 1hzh_H 130 ----------TKGPSVFPLAPS-SKSTSGGTAALGCLVK--DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVV 196 (457)
T ss_dssp ----------CBCCEEEEECCC-SCCCTTCCEEEEEEEE--SBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEE
T ss_pred ----------CCCCeEEecCcc-ccccCCCcEEEEEEEe--EEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEE
Confidence 124544433222 2367899999999997 65 75 8999999997653110001111222 2479
Q ss_pred EEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeE
Q psy2148 1486 NFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVF 1565 (1884)
Q Consensus 1486 ~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 1565 (1884)
.|.++..+| |.|+|.|.|..|.......+.+...+....-. . .....+..+|.+
T Consensus 197 ~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~------------------~-------~~~~~~~~~p~v 250 (457)
T 1hzh_H 197 TVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCP------------------P-------CPAPELLGGPSV 250 (457)
T ss_dssp EECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCC------------------S-------CCCCCCSSSCEE
T ss_pred EecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccC------------------C-------CCCccccCCceE
Confidence 999999999 99999999998876555555443221100000 0 000012234554
Q ss_pred -ecCCcccc-cccCCceEEEEEEecCCCC----eEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCC
Q psy2148 1566 -VSQPEAQK-VQEGEPARFCTRVTGYPRP----RVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKP 1639 (1884)
Q Consensus 1566 -~~~~~~~~-v~~g~~~~l~C~~~g~p~~----~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1639 (1884)
...+.... +.+|++++|.|.+.|.|++ .++|+++|..+.......
T Consensus 251 ~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~----------------------------- 301 (457)
T 1hzh_H 251 FLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP----------------------------- 301 (457)
T ss_dssp EEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEE-----------------------------
T ss_pred EeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccccc-----------------------------
Confidence 44443333 6789999999999988543 889999887763100000
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCc
Q psy2148 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 1719 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g 1719 (1884)
. . ......+.+ ...|.|.....+|+|.|+|.|.|..+
T Consensus 302 --------------------------------~-~-----~~~~g~~~~-----~~~l~i~~~d~~d~G~Y~C~a~n~~~ 338 (457)
T 1hzh_H 302 --------------------------------R-E-----EQYNSTYRV-----VSVLTVLHQDWLNGKEYKCKVSNKAL 338 (457)
T ss_dssp --------------------------------E-E-----ECTTSCEEE-----EEEECCCHHHHHHTCCEEEEEECTTS
T ss_pred --------------------------------c-e-----ecCCCcEEE-----EEEEEECHHHccCCCcEEEEEeCCCC
Confidence 0 0 000001111 12244545555569999999998866
Q ss_pred eEEEEEEEEEEecccCCCCCCCCCeEEeccCce-EEcCCceEEEEEEEecCCCc--EEEEEeCCEecCCCCCe--EEeec
Q psy2148 1720 KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSA-VINVGQLARFDAKISATKPL--DVYWLKNGKKIIPDIRY--KTLEE 1794 (1884)
Q Consensus 1720 ~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~-~~~~G~~~~l~C~~~g~p~p--~v~W~k~~~~l~~~~~~--~~~~~ 1794 (1884)
.......+.+... ...+|.+...+... .+..|+ ++|.|.+.|.|+| .|+|+|||..+...... ....+
T Consensus 339 ~~~~~~~v~~~~~------~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~ 411 (457)
T 1hzh_H 339 PAPIEKTISKAKG------QPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD 411 (457)
T ss_dssp SSCEEEEECCCCC------CCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTT
T ss_pred CCcceEEEEcccC------CCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCC
Confidence 5443333432100 01578777654433 334455 9999999996443 89999999998643221 11122
Q ss_pred CC---eEEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1795 DN---LFTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1795 ~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
+. ...|.|.....+|.|.|+|.|.|....
T Consensus 412 g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 443 (457)
T 1hzh_H 412 GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 443 (457)
T ss_dssp SCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CCEEEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence 22 124666666667899999999998654
No 53
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.95 E-value=3.9e-29 Score=303.31 Aligned_cols=297 Identities=22% Similarity=0.325 Sum_probs=146.8
Q ss_pred CccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEEEEecCceEEEE
Q psy2148 715 NIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTS 794 (1884)
Q Consensus 715 ~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~ 794 (1884)
....+.+|+++.|.|.+.+ +.|.+.++|+|+|..+..+.++.+. ...|.|.+++.+|+|.|+|.|.|. |..+..
T Consensus 16 ~~~~v~~G~~v~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~ 89 (334)
T 1ry7_B 16 EQLVFGSGDAVELSCPPPG-GGPMGPTVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQRLT-QRVLCH 89 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEecCCcEEEEeeCCC-CCCCcceEEEECCeeCCCcccEEec----cceEEEeecccccCEEEEEEEEeC-CeEEEE
Confidence 3347899999999999984 2367899999999999877766552 357999999999999999999999 888888
Q ss_pred EEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEeecCCCCccccc
Q psy2148 795 ASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEGTI 874 (1884)
Q Consensus 795 ~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~~~~~~~~~~~~ 874 (1884)
+.|.|...+....... + ..+.. ...
T Consensus 90 ~~l~V~~~~~~~~~~~----------------------~--------~~~~~----~~~--------------------- 114 (334)
T 1ry7_B 90 FSVRVTDAPSSGDDED----------------------G--------EDEAE----DTG--------------------- 114 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeccCccccccc----------------------c--------ccccc----ccc---------------------
Confidence 8888765543210000 0 00000 000
Q ss_pred ceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeec----CCceeecCCCeEEEEEEEeeCCCCCcEE
Q psy2148 875 DKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTT----PTDLTLAESTLAHFECRLTPTNDPSMTV 950 (1884)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~v~~G~~v~l~C~v~~~~~P~~~v 950 (1884)
....+|.|..+ .....+.+|+.+.|.|.+. +.|.+.|
T Consensus 115 -------------------------------------~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~--g~p~~~v 155 (334)
T 1ry7_B 115 -------------------------------------VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSI 155 (334)
T ss_dssp -----------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCC--CSSCCEE
T ss_pred -------------------------------------ccCCCCEEeccccccceeEEecCCCcEEEEEEcc--CCCCCeE
Confidence 00123444432 2346788999999999998 6788899
Q ss_pred EEeeCCEEccCCCcEE-EEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchh
Q psy2148 951 EWFHNGKALSAGSRIK-TINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATK 1029 (1884)
Q Consensus 951 ~W~~~g~~i~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~ 1029 (1884)
+|+|+|..+....++. .....+...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...+.
T Consensus 156 ~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~---------------- 219 (334)
T 1ry7_B 156 SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP---------------- 219 (334)
T ss_dssp ECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC----------------
T ss_pred EEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC----------------
Confidence 9999999987765431 11223344799999999999999999999999999999999975321
Q ss_pred hHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEE----CCEeccCCCce--
Q psy2148 1030 NIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFF----NGRPFATGSRV-- 1103 (1884)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k----~~~~l~~~~~~-- 1103 (1884)
.+|.+.........+.+|+.+.|.|.+. |.|.+.|.|+| ||..+..+...
T Consensus 220 ----------------------~~p~~~~~~~~~~~~~~G~~v~l~C~~~--g~p~p~v~W~~~~~~~g~~~~~~~~~~~ 275 (334)
T 1ry7_B 220 ----------------------HRPILQAGLPANQTAVLGSDVEFHCKVY--SDAQPHIQWLKHVEVNGSKVGPDGTPYV 275 (334)
T ss_dssp ----------------------SSCBCCTTCSCCEEEESSCCEEECCCCB--CSSCEEEEEEECCCGGGCSBCTTSSBCC
T ss_pred ----------------------CCCceEecCCCceEEeCCCCEEEEEEEe--cCCCCeEEEEECCcCCCccccCCCCeeE
Confidence 1233332222346678999999999997 88999999999 77777654331
Q ss_pred EEEee-------CcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeeccc
Q psy2148 1104 KTVYD-------FGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHD 1151 (1884)
Q Consensus 1104 ~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~ 1151 (1884)
.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.|...+.
T Consensus 276 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 276 TVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330 (334)
T ss_dssp CCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred EEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCC
Confidence 11111 1224799999999999999999999999999999999986543
No 54
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.95 E-value=2.2e-26 Score=292.99 Aligned_cols=388 Identities=12% Similarity=0.101 Sum_probs=235.1
Q ss_pred eecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEcc-----------------CCCcEEEEee--CCeEEEEE
Q psy2148 920 LTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKALS-----------------AGSRIKTIND--FGFVILEI 978 (1884)
Q Consensus 920 ~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i~-----------------~~~~~~~~~~--~~~~~L~I 978 (1884)
+..+..+.+.+|++++|.|.+.+...+.+.|.|||+ |..+. ...|+.+..+ ++...|.|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 84 (475)
T 1iga_A 5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL 84 (475)
T ss_pred eccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEE
Confidence 345677899999999999999842223668999995 22110 1346665543 35568999
Q ss_pred ccCCCCCCeEEEEEEEcCCee------EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCC
Q psy2148 979 NDVYLRDSGLYTCKATNKHGE------ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPN 1052 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~~G~------~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1884)
.+++.+|+|.|.|.|.|..|. ....+.|.|...+ +.
T Consensus 85 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~ 126 (475)
T 1iga_A 85 SSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSAS--------------------------------------PT 126 (475)
T ss_pred CCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCC--------------------------------------Cc
Confidence 999999999999999998762 2345577776311 02
Q ss_pred CCceeeecCCCcCcCCCCcEEEEEEEeeCCCCC-c-EEEEEECCEeccCCCceEEE-eeCc----EEEEEEcccCcCCcE
Q psy2148 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-M-RIDWFFNGRPFATGSRVKTV-YDFG----FISLDMDYVYARDSG 1125 (1884)
Q Consensus 1053 ~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~-~v~W~k~~~~l~~~~~~~~~-~~~~----~~~l~i~~~~~~d~G 1125 (1884)
+|.+..... ..+.+|+.+.|.|.+.+ ..|. + .|.|++++............ ..++ ...|.|.....+|+|
T Consensus 127 ~P~i~~~~~--~~~~~g~~v~L~C~~~g-~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g 203 (475)
T 1iga_A 127 SPKVFPLSL--CSTQPDGNVVIACLVQG-FFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGK 203 (475)
T ss_pred CCeEEecCc--cccCCCCeEEEEEEEee-ecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCc
Confidence 333322111 12368999999999983 2355 4 99999998543211000011 1111 235889888889999
Q ss_pred EEEEEEEcCCeeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhccccccccc
Q psy2148 1126 EYICRATNKWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWY 1205 (1884)
Q Consensus 1126 ~Y~C~a~n~~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 1205 (1884)
.|+|.|.|..|. .....+.+..+.. +... .+
T Consensus 204 ~Y~C~a~n~~~~-~~~~~v~l~V~~~-------~~~~-----------------------------------------~~ 234 (475)
T 1iga_A 204 SVTCHVKHYTNP-SQDVTVPCPVPST-------PPTP-----------------------------------------SP 234 (475)
T ss_pred eEEEEEEECCCC-ceeeeEecccccC-------cccc-----------------------------------------cc
Confidence 999999999873 2233333211100 0000 00
Q ss_pred ccchhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCC-CCCCee-EeecceeeeecCCcEE
Q psy2148 1206 DSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIP-EEPPRF-ITEIESVTVQEAEPVR 1283 (1884)
Q Consensus 1206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~-~~~~~~~~v~~g~~v~ 1283 (1884)
. .. ..... ..+|.+ ...+....+.+|+.+.
T Consensus 235 ~---------------------------------------------~~---~~~~~~~~~p~v~~~~p~~~~~~~G~~v~ 266 (475)
T 1iga_A 235 S---------------------------------------------TP---PTPSPSCCHPRLSLHRPALEDLLLGSEAN 266 (475)
T ss_pred c---------------------------------------------cc---ccCCCCCCCcEEEEcCCChHHhccCCceE
Confidence 0 00 00000 023443 3334444468999999
Q ss_pred EEEEEeecCCC--cceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEcc
Q psy2148 1284 FETRVEPRVDP--RLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYND 1361 (1884)
Q Consensus 1284 l~c~v~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 1361 (1884)
|.|.+.+. .| .+.+.| ++..+...... ........ .-.....|.|.+++.+|+|.|+|.|.|.
T Consensus 267 L~C~~~g~-~p~~~~~i~W--~~~~~~~~~~~-----------~~~~~~~g-~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 331 (475)
T 1iga_A 267 LTCTLTGL-RDASGVTFTW--TPSSGKSAVQG-----------PPERDLCG-CYSVSSVLPGCAEPWNHGKTFTCTAAYP 331 (475)
T ss_pred EEEEEEcc-cCCCceEEEE--CCCCcCCcccc-----------CceECCCC-CEEEEEEEEEchHHhccCCcEEEEEEcC
Confidence 99999864 23 268999 44333221000 00000000 0013457999999999999999999999
Q ss_pred ccceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCcccccccc
Q psy2148 1362 HGEAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQ 1441 (1884)
Q Consensus 1362 ~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~ 1441 (1884)
.|.......|.+.. ...+|.+...+.....+.+|+
T Consensus 332 ~~~~~~~~~v~~~~---------------------------------------------~~~~P~v~~~~~~~~~v~~g~ 366 (475)
T 1iga_A 332 ESKTPLTATLSKSG---------------------------------------------NTFRPEVHLLPPPSEELALNE 366 (475)
T ss_pred CCCCceEEEeecCC---------------------------------------------CCCCCeEEEECCChHHhccCC
Confidence 88754444443210 123565544444333467899
Q ss_pred ceEEEEEEeeCCC-CC-CeEEEeecCeecCCCCCce---eee---eCc----eEEEEEeeeccCCCeEEEEEEEecCc
Q psy2148 1442 STKFECQLAPVGD-PN-MKVEWFLNGKPLPHKNRFN---PIY---DFG----YVAMNFGWVYPEDSGEYLCRATNLYG 1507 (1884)
Q Consensus 1442 ~~~l~C~~~~~g~-p~-~~i~W~~~~~~l~~~~~~~---~~~---~~~----~~~L~i~~~~~~d~G~Y~c~a~n~~G 1507 (1884)
.+.|.|.+. |. |+ +.|+|+|||..|..+.... ... .+| ...|.|.....+|.|.|+|.|.|...
T Consensus 367 ~~~L~C~~~--g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l 442 (475)
T 1iga_A 367 LVTLTCLAR--GFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 442 (475)
T ss_pred ceEEEEEEe--eeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCC
Confidence 999999996 75 43 5999999999987653111 111 222 13577777777889999999999864
No 55
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.95 E-value=1.2e-28 Score=299.16 Aligned_cols=293 Identities=23% Similarity=0.331 Sum_probs=151.2
Q ss_pred ccccccccceEEEEEEeeCCC-CCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEE
Q psy2148 1434 QDQLVEMQSTKFECQLAPVGD-PNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETR 1512 (1884)
Q Consensus 1434 ~~~v~~g~~~~l~C~~~~~g~-p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~ 1512 (1884)
...+.+|+.++|.|.+. |. |.+.|.|+|+|..+..+.++.+ ....|.|.+++.+|+|.|+|.|.|. |.....
T Consensus 17 ~~~v~~G~~v~l~C~~~--~~~p~~~v~W~k~g~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~ 89 (334)
T 1ry7_B 17 QLVFGSGDAVELSCPPP--GGGPMGPTVWVKDGTGLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCH 89 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEecCCcEEEEeeCC--CCCCCcceEEEECCeeCCCcccEEe----ccceEEEeecccccCEEEEEEEEeC-CeEEEE
Confidence 34588999999999986 65 6789999999999877666543 2348999999999999999999999 877777
Q ss_pred EEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEEEEEecCCCC
Q psy2148 1513 AILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRP 1592 (1884)
Q Consensus 1513 ~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~ 1592 (1884)
+.|.|.+.|.... .. .+.. +...
T Consensus 90 ~~l~V~~~~~~~~------------------------------------------~~------~~~~--------~~~~- 112 (334)
T 1ry7_B 90 FSVRVTDAPSSGD------------------------------------------DE------DGED--------EAED- 112 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeccCcccc------------------------------------------cc------cccc--------cccc-
Confidence 7777765332100 00 0000 0000
Q ss_pred eEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeec----CCceeecCCCeEEEEEEEeccCC
Q psy2148 1593 RVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKK----IQPCRAFEQDQARFEVEFDGDPL 1668 (1884)
Q Consensus 1593 ~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~v~~G~~~~l~C~~~g~p~ 1668 (1884)
......+|.|... .....+.+|+.+.|.|.+.|.|.
T Consensus 113 ----------------------------------------~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~ 152 (334)
T 1ry7_B 113 ----------------------------------------TGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPT 152 (334)
T ss_dssp ----------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSC
T ss_pred ----------------------------------------ccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCC
Confidence 0000123333322 23467889999999999999999
Q ss_pred CeEEEEeCCeecCCCCCe-EEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEe
Q psy2148 1669 PTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT 1747 (1884)
Q Consensus 1669 ~~i~W~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~ 1747 (1884)
+.+.|+|++..+....++ .+.......+|.|.++..+|+|.|+|.|.|..|.....+.|.|...+. .+|.+..
T Consensus 153 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~------~~p~~~~ 226 (334)
T 1ry7_B 153 PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP------HRPILQA 226 (334)
T ss_dssp CEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC------SSCBCCT
T ss_pred CeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC------CCCceEe
Confidence 999999999988765433 122234556899999999999999999999999999999999986432 2455543
Q ss_pred -ccCceEEcCCceEEEEEEEecCCCcEEEEEe----CCEecCCCCC--eEEeec-------CCeEEEEEccCCCCCCEEE
Q psy2148 1748 -TISSAVINVGQLARFDAKISATKPLDVYWLK----NGKKIIPDIR--YKTLEE-------DNLFTLLIIEAVVEDSGAY 1813 (1884)
Q Consensus 1748 -~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k----~~~~l~~~~~--~~~~~~-------~~~~~L~i~~~~~~d~G~Y 1813 (1884)
.+....+.+|+.++|.|.+.|.|.|.|.|+| +|..+..+.+ +.+... .....|.|.++..+|+|.|
T Consensus 227 ~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 306 (334)
T 1ry7_B 227 GLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306 (334)
T ss_dssp TCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEE
T ss_pred cCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEE
Confidence 3567889999999999999999999999999 7777755433 122211 1223799999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEEecC
Q psy2148 1814 ECVAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1814 ~C~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
+|.|.|..|....++.|.|...+
T Consensus 307 ~C~a~N~~G~~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 307 TCLAGNSIGFSHHSAWLVVLPAE 329 (334)
T ss_dssp EEEEEESSCCEEEEEEEEEECSC
T ss_pred EEEEeCCCCeEEEEEEEEEEECC
Confidence 99999999999999999999754
No 56
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.95 E-value=2.6e-26 Score=292.19 Aligned_cols=396 Identities=11% Similarity=0.070 Sum_probs=224.6
Q ss_pred EeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccc--e--EEEe-eccceeeeeeeeeeeeceEEEE
Q psy2148 1268 ITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINIST--A--FLIF-NFCLHAVIFSHPIFDLGFVSLD 1342 (1884)
Q Consensus 1268 ~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~--~--~~~~-~~~~~~~~~~~~~~~~~~~~L~ 1342 (1884)
+..+..+.+.+|+.++|.|.+.+...+...+.|++............. . .... .....|..... ....+..+|.
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~~~L~ 83 (475)
T 1iga_A 5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTR-DTSATTAYMG 83 (475)
T ss_pred eccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEE-cCCCCeEEEE
Confidence 344577899999999999999864334678999986421111000000 0 0000 00011111110 0123567899
Q ss_pred EeeecccCceEEEEEEEccccc------eeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCcc
Q psy2148 1343 IDYVYPEDQGEYVCRAYNDHGE------AFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDL 1416 (1884)
Q Consensus 1343 I~~~~~~d~G~Y~C~a~n~~g~------~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1416 (1884)
|.+++.+|+|.|.|.+.|..|. ....+.|.|...+
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------- 124 (475)
T 1iga_A 84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSAS--------------------------------------- 124 (475)
T ss_pred ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCC---------------------------------------
Confidence 9999999999999999997762 2234566665311
Q ss_pred CCcccCCCCeEEEccCCccccccccceEEEEEEeeCCC-CC-C-eEEEeecCeecCCCCCceee-eeCc----eEEEEEe
Q psy2148 1417 YEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGD-PN-M-KVEWFLNGKPLPHKNRFNPI-YDFG----YVAMNFG 1488 (1884)
Q Consensus 1417 ~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~-p~-~-~i~W~~~~~~l~~~~~~~~~-~~~~----~~~L~i~ 1488 (1884)
..+|.+...... .+.+|+.++|.|.+. |. |. + .|.|++++..+......... ..++ ...|.|.
T Consensus 125 -----~~~P~i~~~~~~--~~~~g~~v~L~C~~~--g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~ 195 (475)
T 1iga_A 125 -----PTSPKVFPLSLC--STQPDGNVVIACLVQ--GFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLP 195 (475)
T ss_pred -----CcCCeEEecCcc--ccCCCCeEEEEEEEe--eecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEec
Confidence 123444332221 236899999999997 65 65 4 99999988543211000011 1222 1358888
Q ss_pred eeccCCCeEEEEEEEecCcceEEEEEEE--EeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeE-
Q psy2148 1489 WVYPEDSGEYLCRATNLYGMDETRAILK--TTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVF- 1565 (1884)
Q Consensus 1489 ~~~~~d~G~Y~c~a~n~~G~~~~~~~l~--V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~- 1565 (1884)
.+..+|+|.|+|.|.|..|. .....+. |...+.... .... ....... .+|.+
T Consensus 196 ~~~~~d~g~Y~C~a~n~~~~-~~~~~v~l~V~~~~~~~~------------------~~~~-----~~~~~~~-~~p~v~ 250 (475)
T 1iga_A 196 ATQCLAGKSVTCHVKHYTNP-SQDVTVPCPVPSTPPTPS------------------PSTP-----PTPSPSC-CHPRLS 250 (475)
T ss_pred hhHcCCCceEEEEEEECCCC-ceeeeEecccccCccccc------------------cccc-----ccCCCCC-CCcEEE
Confidence 88889999999999999874 2233333 211000000 0000 0000000 12221
Q ss_pred ecCCcccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeec
Q psy2148 1566 VSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKK 1645 (1884)
Q Consensus 1566 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1645 (1884)
...+....
T Consensus 251 ~~~p~~~~------------------------------------------------------------------------ 258 (475)
T 1iga_A 251 LHRPALED------------------------------------------------------------------------ 258 (475)
T ss_pred EcCCChHH------------------------------------------------------------------------
Confidence 22222222
Q ss_pred CCceeecCCCeEEEEEEEeccCC---CeEEEEeCCeecCCCCCeE-EEE----eCceeEEEEcccccCCCeEEEEEEEeC
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDFPITSSPDFQ-IHT----FSTKSILIMRQVFMEDSGVFAVIAENR 1717 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p~---~~i~W~~~~~~~~~~~~~~-~~~----~~~~~~L~i~~v~~~DsG~Y~C~a~n~ 1717 (1884)
+.+|+.+.|.|.+.|.++ +.|+| ++..+....... ... ....+.|.|.++..+|+|.|+|.|.|.
T Consensus 259 -----~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 331 (475)
T 1iga_A 259 -----LLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP 331 (475)
T ss_pred -----hccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcC
Confidence 344555555555554432 35555 222221110000 000 012456999999999999999999999
Q ss_pred CceEEEEEEEEEEecccCCCCCCCCCeEEeccCc-eEEcCCceEEEEEEEecC-C-CcEEEEEeCCEecCCCCCeE----
Q psy2148 1718 GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISS-AVINVGQLARFDAKISAT-K-PLDVYWLKNGKKIIPDIRYK---- 1790 (1884)
Q Consensus 1718 ~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~-~~~~~G~~~~l~C~~~g~-p-~p~v~W~k~~~~l~~~~~~~---- 1790 (1884)
.|.......|.+... ..+|.+...+.. ..+..|+.++|.|.+.|. | .+.|.|+|||..+..+....
T Consensus 332 ~~~~~~~~~v~~~~~-------~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~ 404 (475)
T 1iga_A 332 ESKTPLTATLSKSGN-------TFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASR 404 (475)
T ss_pred CCCCceEEEeecCCC-------CCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccc
Confidence 887655555543211 157777655443 346789999999999995 4 35999999999987653111
Q ss_pred Ee---ecCC---eEEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1791 TL---EEDN---LFTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1791 ~~---~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
.. .++. ...|.|.....+|.|.|+|.|.|....
T Consensus 405 ~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 405 QEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred cccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 11 1111 236788888888999999999998754
No 57
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.95 E-value=2.9e-29 Score=315.80 Aligned_cols=393 Identities=9% Similarity=0.042 Sum_probs=227.4
Q ss_pred ecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccc-----eEEEeeccceeeeeeeeeeeeceEEEEEe
Q psy2148 1270 EIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINIST-----AFLIFNFCLHAVIFSHPIFDLGFVSLDID 1344 (1884)
Q Consensus 1270 ~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~I~ 1344 (1884)
.+..+.+.+|++++|.|.+.+...+.+.+.|+|+............ ..........|..... ....+..+|.|.
T Consensus 5 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~~~L~I~ 83 (434)
T 1igy_B 5 ESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTR-DRSSNTANIHLS 83 (434)
T ss_dssp CCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCB-CGGGCBBCEEEC
T ss_pred CCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEE-ECCCCEEEEEEC
Confidence 3456789999999999999864224678999987421110000000 0000000011111110 012345689999
Q ss_pred eecccCceEEEEEEEccccceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCC
Q psy2148 1345 YVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQP 1424 (1884)
Q Consensus 1345 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1424 (1884)
+++.+|+|.|+|.|.|..+.....+.|.|...+ ..+
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~--------------------------------------------~~~ 119 (434)
T 1igy_B 84 SLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAK--------------------------------------------TTP 119 (434)
T ss_dssp SBCGGGCSEECCCCSSSSCCCCCCEECEECCSC--------------------------------------------CBC
T ss_pred CCChHHCEEEEEEEEccccccCCceEEEEccCC--------------------------------------------CCC
Confidence 999999999999999865555555677775321 113
Q ss_pred CeEEEccCCccccccccceEEEEEEeeCCC-CCC-eEEEeecCeecCCCCCceeeeeCc---eEEEEEeeeccCCCeEEE
Q psy2148 1425 PRFVTQIKTQDQLVEMQSTKFECQLAPVGD-PNM-KVEWFLNGKPLPHKNRFNPIYDFG---YVAMNFGWVYPEDSGEYL 1499 (1884)
Q Consensus 1425 P~~~~~~~~~~~v~~g~~~~l~C~~~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~ 1499 (1884)
|.+...... ..+.+|+.++|.|.+. |. |.| .|+|+|++..+...........+. ...|.|.++..+| |.|+
T Consensus 120 P~i~~~~~~-~~~~~G~~v~L~C~~~--g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~ 195 (434)
T 1igy_B 120 PSVYPLAPG-SAAQTNSMVTLGCLVK--GYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVT 195 (434)
T ss_dssp CCEEEECCC-CCCCCTTEEEEEEEEE--EEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCE
T ss_pred CeEEEcCCc-cccCCCCcEEEEEEEe--eecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEE
Confidence 443322222 2357899999999997 65 776 999999987542100000011111 2468999998889 9999
Q ss_pred EEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccc-cccCC
Q psy2148 1500 CRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQK-VQEGE 1578 (1884)
Q Consensus 1500 c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~-v~~g~ 1578 (1884)
|.|.|..|.......+.+.+..-.+ .... ....|+.++..+.... +.+|+
T Consensus 196 C~a~n~~~~~~~~~~~~~~~~~~~v---------------------------~~~~--~~~~p~v~~~~p~~~~~v~~G~ 246 (434)
T 1igy_B 196 CNVAHPASSTKVDKKIVPRDCGCKP---------------------------CICT--VPEVSSVFIFPPKPKDTLLITV 246 (434)
T ss_dssp EEEECTTTTCCEEEECCCCCCCCCC---------------------------CCCC--CSSSCCEEEECCCHHHHHSTTS
T ss_pred EEEEeCCCCccceeeccCCCCCCcc---------------------------ccCC--CCcCcEEEEeCCChHHhcccCC
Confidence 9999999875544444332100000 0000 0000222333322222 56666
Q ss_pred ceEEEEEEecCC----CCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCC
Q psy2148 1579 PARFCTRVTGYP----RPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQ 1654 (1884)
Q Consensus 1579 ~~~l~C~~~g~p----~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G 1654 (1884)
+++|.|.+.|.| .+.++|+++|..+
T Consensus 247 ~~~L~C~~~g~~p~P~~~~i~W~k~~~~~--------------------------------------------------- 275 (434)
T 1igy_B 247 TPKVTCVVVDISKDDPEVQFSWFVDNVEV--------------------------------------------------- 275 (434)
T ss_dssp CCEEEEEECCCCSSCCCCCBCBBSSSCCB---------------------------------------------------
T ss_pred CcEEEEEEeccccCCCCeEEEEEeCCccc---------------------------------------------------
Confidence 666666666652 2356666655433
Q ss_pred CeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEE-----EeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEE
Q psy2148 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIH-----TFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVV 1729 (1884)
Q Consensus 1655 ~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V 1729 (1884)
......... .....++|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 276 --------------------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~ 329 (434)
T 1igy_B 276 --------------------------HTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISK 329 (434)
T ss_dssp --------------------------CCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCC
T ss_pred --------------------------CCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEec
Confidence 111000000 0012345999999999999999999999886533223322
Q ss_pred EecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CC-cEEEEEeCCEecCCCCCeEE--eecCC---eEEEEE
Q psy2148 1730 EEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LDVYWLKNGKKIIPDIRYKT--LEEDN---LFTLLI 1802 (1884)
Q Consensus 1730 ~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~k~~~~l~~~~~~~~--~~~~~---~~~L~i 1802 (1884)
... ...+|.+...+.......|+.++|.|.+.|. |. +.|+|+|+|..+........ ..++. ...|.|
T Consensus 330 ~~~------~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i 403 (434)
T 1igy_B 330 TKG------KPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNV 403 (434)
T ss_dssp CCS------CCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEE
T ss_pred cCC------CCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEE
Confidence 100 0147777665554444568889999999995 43 48999999998853321111 11221 235777
Q ss_pred ccCCCCCCEEEEEEEEeCCee
Q psy2148 1803 IEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1803 ~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
.....+|.|.|+|.|.|....
T Consensus 404 ~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 404 QKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp EHHHHHTTCCEEEEEEETTSG
T ss_pred CchhccCCCEEEEEEEcCCCC
Confidence 777778899999999998653
No 58
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.95 E-value=4.6e-29 Score=314.04 Aligned_cols=385 Identities=13% Similarity=0.114 Sum_probs=235.6
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc----c-------------CCCcEEEEee--CCeEEEEEc
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL----S-------------AGSRIKTIND--FGFVILEIN 979 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i----~-------------~~~~~~~~~~--~~~~~L~I~ 979 (1884)
..+..+.+.+|++++|.|.+.+...+.+.|.|+|++ ..+ . ...|+.+..+ ++...|.|.
T Consensus 4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (434)
T 1igy_B 4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS 83 (434)
T ss_dssp ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence 345667899999999999998422246789999963 221 0 1346665543 345579999
Q ss_pred cCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeee
Q psy2148 980 DVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQ 1059 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1059 (1884)
+++.+|+|.|+|.|.|..+.....+.|.|...+ +.+|.+...
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~~P~i~~~ 125 (434)
T 1igy_B 84 SLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAK--------------------------------------TTPPSVYPL 125 (434)
T ss_dssp SBCGGGCSEECCCCSSSSCCCCCCEECEECCSC--------------------------------------CBCCCEEEE
T ss_pred CCChHHCEEEEEEEEccccccCCceEEEEccCC--------------------------------------CCCCeEEEc
Confidence 999999999999999976555555677776311 023333322
Q ss_pred cCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeCc---EEEEEEcccCcCCcEEEEEEEEcCC
Q psy2148 1060 LQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDFG---FISLDMDYVYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1060 ~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~ 1135 (1884)
.. ...+.+|+.++|.|.+.+ ..|.+ .|.|+|+|..+...........+. ...|.|..+..+| |.|+|.|.|..
T Consensus 126 ~~-~~~~~~G~~v~L~C~~~g-~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~ 202 (434)
T 1igy_B 126 AP-GSAAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPA 202 (434)
T ss_dssp CC-CCCCCCTTEEEEEEEEEE-EBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTT
T ss_pred CC-ccccCCCCcEEEEEEEee-ecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCC
Confidence 21 234578999999999983 23665 999999997632100000000111 2469999999889 99999999999
Q ss_pred eeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhh
Q psy2148 1136 GTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKE 1215 (1884)
Q Consensus 1136 G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 1215 (1884)
|.......+.+....-.+
T Consensus 203 ~~~~~~~~~~~~~~~~~v-------------------------------------------------------------- 220 (434)
T 1igy_B 203 SSTKVDKKIVPRDCGCKP-------------------------------------------------------------- 220 (434)
T ss_dssp TTCCEEEECCCCCCCCCC--------------------------------------------------------------
T ss_pred CCccceeeccCCCCCCcc--------------------------------------------------------------
Confidence 975444433221100000
Q ss_pred ccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceee-eecCCcEEEEEEEeecCC-
Q psy2148 1216 RANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVT-VQEAEPVRFETRVEPRVD- 1293 (1884)
Q Consensus 1216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-v~~g~~v~l~c~v~~~~~- 1293 (1884)
........|..+...+.... +.+|+.++|.|.+.+...
T Consensus 221 ----------------------------------------~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~ 260 (434)
T 1igy_B 221 ----------------------------------------CICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKD 260 (434)
T ss_dssp ----------------------------------------CCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSS
T ss_pred ----------------------------------------ccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccC
Confidence 00000001222222222222 889999999999986421
Q ss_pred -CcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEE
Q psy2148 1294 -PRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATIS 1372 (1884)
Q Consensus 1294 -p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 1372 (1884)
+.+.|.|+|++..+....... ... ...........|.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus 261 P~~~~i~W~k~~~~~~~~~~~~---------~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~ 328 (434)
T 1igy_B 261 DPEVQFSWFVDNVEVHTAQTQP---------REE---QFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTIS 328 (434)
T ss_dssp CCCCCBCBBSSSCCBCCCSCCC---------CCC---CCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCC
T ss_pred CCCeEEEEEeCCcccCCcccCc---------cee---CCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEe
Confidence 356899999997654321100 000 0000001234699999999999999999999888642222221
Q ss_pred EeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCccccccccceEEEEEEeeC
Q psy2148 1373 CKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPV 1452 (1884)
Q Consensus 1373 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~ 1452 (1884)
+. .....||.+...+.... ..+|+.++|.|.+.
T Consensus 329 ~~--------------------------------------------~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~-- 361 (434)
T 1igy_B 329 KT--------------------------------------------KGKPRAPQVYTIPPPKE-QMAKDKVSLTCMIT-- 361 (434)
T ss_dssp CC--------------------------------------------CSCCBCCCCEEECCCSS-SSSSSEEEEEEEEE--
T ss_pred cc--------------------------------------------CCCCcCCEEEEECCCHH-HhcCCcEEEEEEEE--
Confidence 10 01123566554443332 33567799999997
Q ss_pred CC-CC-CeEEEeecCeecCCCCCcee-eeeCce----EEEEEeeeccCCCeEEEEEEEecCc
Q psy2148 1453 GD-PN-MKVEWFLNGKPLPHKNRFNP-IYDFGY----VAMNFGWVYPEDSGEYLCRATNLYG 1507 (1884)
Q Consensus 1453 g~-p~-~~i~W~~~~~~l~~~~~~~~-~~~~~~----~~L~i~~~~~~d~G~Y~c~a~n~~G 1507 (1884)
|. |+ +.|+|+|+|..+........ ...++. ..|.|.....+|.|.|+|.|.|...
T Consensus 362 g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 423 (434)
T 1igy_B 362 DFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 423 (434)
T ss_dssp EEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred eeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCC
Confidence 74 43 48999999998854221111 122332 3577777777889999999999854
No 59
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.5e-27 Score=277.03 Aligned_cols=268 Identities=16% Similarity=0.133 Sum_probs=198.7
Q ss_pred CCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEEE
Q psy2148 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRA 784 (1884)
Q Consensus 705 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 784 (1884)
.+|.|.... ....+.+|++++|.|.+. + .++|+|+|..+ .....+ + ..|.|.+++.+|+|.|+|.|
T Consensus 11 ~~P~i~~~~-~~~~v~~G~~v~l~C~~~--~----~i~W~~~~~~~-----~~~~~~-~-~~L~i~~~~~~d~G~Y~C~~ 76 (290)
T 2o26_X 11 SPPSIHPAQ-SELIVEAGDTLSLTCIDP--D----FVRWTFKTYFN-----EMVENK-K-NEWIQEKAEATRTGTYTCSN 76 (290)
T ss_dssp -CCEESSCS-SEEEEETTSCEEEEEECT--T----EEEEEEECSSS-----CEEEEC-S-SEEEETTCCGGGCEEEEEEE
T ss_pred CCCEEeCCC-CeEEEcCCCcEEEEECCC--C----cEEEecCCcce-----eeecCC-C-ceEEEeccCHHhCeEEEEEe
Confidence 456665433 334789999999999986 3 89999999887 111222 2 68999999999999999999
Q ss_pred EecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEee
Q psy2148 785 YNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILES 864 (1884)
Q Consensus 785 ~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~~ 864 (1884)
.| |. +.++.|.|..+|
T Consensus 77 ~n--g~-~~~~~l~V~~~~------------------------------------------------------------- 92 (290)
T 2o26_X 77 SN--GL-TSSIYVFVRDPA------------------------------------------------------------- 92 (290)
T ss_dssp SS--SC-EEEEEEEEECSS-------------------------------------------------------------
T ss_pred eC--Cc-cEEEEEEEeCCC-------------------------------------------------------------
Confidence 99 54 566666664322
Q ss_pred cCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEEeeCC
Q psy2148 865 QLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTN 944 (1884)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~ 944 (1884)
.+...+.+..+.+|+.+.|.|.+. +
T Consensus 93 -----------------------------------------------------~~~~~~~~~~~~~g~~v~l~C~~~--~ 117 (290)
T 2o26_X 93 -----------------------------------------------------KLFLVGLPLFGKEDSDALVRCPLT--D 117 (290)
T ss_dssp -----------------------------------------------------CCBCCCCCEEEETTSCEEECCCBS--C
T ss_pred -----------------------------------------------------cccccccceEEecCCeEEEeCcCC--C
Confidence 111234456788999999999997 4
Q ss_pred CCC-cEEEE-eeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCe-EEEEEEEcCCeeEE-EEEEEEEEeecccccccch
Q psy2148 945 DPS-MTVEW-FHNGKALSAGSRIKTINDFGFVILEINDVYLRDSG-LYTCKATNKHGEAT-TSCKLTVKGRQGIDVEPQV 1020 (1884)
Q Consensus 945 ~P~-~~v~W-~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~~~-~~~~l~V~~~~~~~~~p~~ 1020 (1884)
|. +.|+| ++||..+..+.++.....+ .|.|.+++.+|+| .|+|.|.|..|... ..+.|.|...+.
T Consensus 118 -p~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~------- 186 (290)
T 2o26_X 118 -PQVSQYSLIECDGKSLPTDLTFVPNPKA---GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK------- 186 (290)
T ss_dssp -CSCEEEEEEETTSCCCCTTCEEEEETTT---EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCC-------
T ss_pred -CCCceEEEEeCCCcCCCCCCceeeCCCC---CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCC-------
Confidence 66 89999 5799999887777665443 5999999999999 99999999976643 357888863211
Q ss_pred hHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcE-EEEEECCEec--
Q psy2148 1021 SAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMR-IDWFFNGRPF-- 1097 (1884)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~-v~W~k~~~~l-- 1097 (1884)
.+|.+...... ..+.+|+.+.|.|.+. |.|.+. |.|+|+|..+
T Consensus 187 -------------------------------~~P~i~~~~~~-~~v~~G~~v~l~C~~~--g~p~p~~i~W~~~~~~~~~ 232 (290)
T 2o26_X 187 -------------------------------AIPVVSVPETS-HLLKKGDTFTVVCTIK--DVSTSVNSMWLKMNPQPQH 232 (290)
T ss_dssp -------------------------------SCCEEECSCSB-CCCCTTCCEEEEEEEE--ESSTTCEEEEEEESSSEEE
T ss_pred -------------------------------CCCccccCCCc-ceEecCCcEEEEEEEe--cCCcceeEEEecCCCCCcc
Confidence 45666554444 5888999999999998 778886 9999999873
Q ss_pred --cCCCceEEE---eeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeecc
Q psy2148 1098 --ATGSRVKTV---YDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKH 1150 (1884)
Q Consensus 1098 --~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~ 1150 (1884)
......... .......|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 233 IAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp CCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred ceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 322222222 11234689999999999999999999999999999999887543
No 60
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.95 E-value=3e-27 Score=279.97 Aligned_cols=268 Identities=17% Similarity=0.148 Sum_probs=198.3
Q ss_pred CCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEE
Q psy2148 1422 KQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCR 1501 (1884)
Q Consensus 1422 ~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~ 1501 (1884)
..||.|...+ ....+.+|+.++|.|.+. | .|.|+|++..+ +..... + ..|.|.+++.+|+|.|+|.
T Consensus 10 ~~~P~i~~~~-~~~~v~~G~~v~l~C~~~--~----~i~W~~~~~~~-----~~~~~~-~-~~L~i~~~~~~d~G~Y~C~ 75 (290)
T 2o26_X 10 PSPPSIHPAQ-SELIVEAGDTLSLTCIDP--D----FVRWTFKTYFN-----EMVENK-K-NEWIQEKAEATRTGTYTCS 75 (290)
T ss_dssp --CCEESSCS-SEEEEETTSCEEEEEECT--T----EEEEEEECSSS-----CEEEEC-S-SEEEETTCCGGGCEEEEEE
T ss_pred CCCCEEeCCC-CeEEEcCCCcEEEEECCC--C----cEEEecCCcce-----eeecCC-C-ceEEEeccCHHhCeEEEEE
Confidence 4578887433 334588999999999975 5 89999999877 111222 2 5899999999999999999
Q ss_pred EEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceE
Q psy2148 1502 ATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPAR 1581 (1884)
Q Consensus 1502 a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~ 1581 (1884)
|.| |. ..++.|.|.++|.. + ..
T Consensus 76 ~~n--g~-~~~~~l~V~~~~~~-----------------------------------------~-~~------------- 97 (290)
T 2o26_X 76 NSN--GL-TSSIYVFVRDPAKL-----------------------------------------F-LV------------- 97 (290)
T ss_dssp ESS--SC-EEEEEEEEECSSCC-----------------------------------------B-CC-------------
T ss_pred eeC--Cc-cEEEEEEEeCCCcc-----------------------------------------c-cc-------------
Confidence 999 64 66777877643321 0 11
Q ss_pred EEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEE
Q psy2148 1582 FCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEV 1661 (1884)
Q Consensus 1582 l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C 1661 (1884)
.....+.+|+.+.|.|
T Consensus 98 ----------------------------------------------------------------~~~~~~~~g~~v~l~C 113 (290)
T 2o26_X 98 ----------------------------------------------------------------GLPLFGKEDSDALVRC 113 (290)
T ss_dssp ----------------------------------------------------------------CCCEEEETTSCEEECC
T ss_pred ----------------------------------------------------------------ccceEEecCCeEEEeC
Confidence 1123455677777777
Q ss_pred EEeccCC-CeEEE-EeCCeecCCCCCeEEEEeCceeEEEEcccccCCCe-EEEEEEEeCCceEE-EEEEEEEEecccCCC
Q psy2148 1662 EFDGDPL-PTIKW-FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG-VFAVIAENRGGKAK-CSANLVVEEKRQGGR 1737 (1884)
Q Consensus 1662 ~~~g~p~-~~i~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG-~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~ 1737 (1884)
.+.| |. +.++| +++|..+....++.+. ....|.|.++..+|+| .|+|.|.|..|... ..+.|.|.....
T Consensus 114 ~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~---~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~--- 186 (290)
T 2o26_X 114 PLTD-PQVSQYSLIECDGKSLPTDLTFVPN---PKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK--- 186 (290)
T ss_dssp CBSC-CSCEEEEEEETTSCCCCTTCEEEEE---TTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCC---
T ss_pred cCCC-CCCceEEEEeCCCcCCCCCCceeeC---CCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCC---
Confidence 7775 66 88889 4678777655433322 2357999999999999 99999999855533 357888874322
Q ss_pred CCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcE-EEEEeCCEec----CCCCCeEEee---cCCeEEEEEccCCCCC
Q psy2148 1738 GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLD-VYWLKNGKKI----IPDIRYKTLE---EDNLFTLLIIEAVVED 1809 (1884)
Q Consensus 1738 ~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~k~~~~l----~~~~~~~~~~---~~~~~~L~i~~~~~~d 1809 (1884)
.+|.|...+....+.+|+.++|.|.+.|.|.|. |+|+|++..+ .......+.. ......|.|.++..+|
T Consensus 187 ---~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d 263 (290)
T 2o26_X 187 ---AIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263 (290)
T ss_dssp ---SCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSS
T ss_pred ---CCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCccc
Confidence 589998888888999999999999999999996 9999999873 3333332221 1234589999999999
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEEec
Q psy2148 1810 SGAYECVAMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1810 ~G~Y~C~a~N~~G~~~~~~~l~V~~~ 1835 (1884)
+|.|+|.|.|..|..+.++.|.|.++
T Consensus 264 ~G~Y~C~a~N~~g~~~~~~~l~V~~~ 289 (290)
T 2o26_X 264 SGVFMCYANNTFGSANVTTTLKVVEK 289 (290)
T ss_dssp CEEEEEEEECSSCEEEEEEEECC---
T ss_pred CeEEEEEEeCCCCcEEEEEEEEEEeC
Confidence 99999999999999999999999874
No 61
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.95 E-value=3.4e-27 Score=288.15 Aligned_cols=286 Identities=19% Similarity=0.263 Sum_probs=176.6
Q ss_pred eeecCCCccccCCCCcEEEEEEEeec---------CCCCCeEEEeeCCccC------C-CCCCeEEEeeCCEEEEEEccc
Q psy2148 709 FTVPLSNIDDLREGENAHFEARLTPT---------DDPKLKVEWFWNGKPM------K-TGSRFRTFCDFGFVILEISPV 772 (1884)
Q Consensus 709 ~~~~~~~~~~v~~G~~~~l~C~~~~~---------g~p~~~v~W~k~g~~l------~-~~~~~~~~~~~~~~~L~i~~~ 772 (1884)
+...+.....+.+|+.+.|.|.+.+. +.|.+.++|+|++... . .....++...++ .|.|.++
T Consensus 9 ~~~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~ 86 (349)
T 4dep_C 9 WGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD--VLWFRPT 86 (349)
T ss_dssp EEECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETT--EEEESSC
T ss_pred cccceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCC--EEEEccC
Confidence 33333344478999999999998731 1234899999988522 1 012233333333 7999999
Q ss_pred CcCCCeEEEEEEEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEE
Q psy2148 773 YPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASM 852 (1884)
Q Consensus 773 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l 852 (1884)
+.+|+|.|+|.|.|..|....++.|.|..++...
T Consensus 87 ~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~---------------------------------------------- 120 (349)
T 4dep_C 87 LLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCF---------------------------------------------- 120 (349)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTS----------------------------------------------
T ss_pred ChhhCEEEEEEEecCCceEEEEEEEEEecCCccc----------------------------------------------
Confidence 9999999999999999988888888775433210
Q ss_pred EEecccceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCC
Q psy2148 853 KVQGKRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAEST 932 (1884)
Q Consensus 853 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~ 932 (1884)
+.....+.+..+.+|+
T Consensus 121 ----------------------------------------------------------------~~~~~~~~~~~~~~g~ 136 (349)
T 4dep_C 121 ----------------------------------------------------------------NSPMKLPVHKLYIEYG 136 (349)
T ss_dssp ----------------------------------------------------------------CCSCCCCEEEEETTCS
T ss_pred ----------------------------------------------------------------CcccccCcceeeecCc
Confidence 0001122345778999
Q ss_pred eEEEEEEE-----eeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCC-eeE---EEE
Q psy2148 933 LAHFECRL-----TPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKH-GEA---TTS 1003 (1884)
Q Consensus 933 ~v~l~C~v-----~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~-G~~---~~~ 1003 (1884)
.+.|.|.+ . +.|.+.|+|+|+|..|....++.. .+ ..|.|.+++.+|+|.|+|.|.|.. |.. +..
T Consensus 137 ~~~l~C~~~~~~~~--g~p~~~v~W~k~~~~l~~~~~~~~--~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~ 210 (349)
T 4dep_C 137 IQRITCPNVDGYFP--SSVKPTITWYMGCYKIQNFNNVIP--EG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRT 210 (349)
T ss_dssp EEEEECCSCTTSSC--TTSCCEEEEEETTEECCSCSSEEE--ET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred cEEEEcCCCccccc--CCCCceEEEeeCCEECCCccceee--cC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEE
Confidence 99999974 4 678999999999999976555433 22 269999999999999999999987 554 566
Q ss_pred EEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCc-CcCCCCcEEEEEEEeeC-
Q psy2148 1004 CKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNL-DVPEAGKVHFDCRLEPK- 1081 (1884)
Q Consensus 1004 ~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~v~~g~~~~l~C~v~~~- 1081 (1884)
+.|.|..++... .+|.+.......+ .+.+|+.+.|.|.+.+.
T Consensus 211 ~~l~v~~~~~~~------------------------------------~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~ 254 (349)
T 4dep_C 211 LTVKVVGSPKNA------------------------------------VPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254 (349)
T ss_dssp EEEEEECCGGGC------------------------------------CSCEEC----------------CCCEEEEECC
T ss_pred EEEEEEccCCCC------------------------------------CCCeEecCCCceeEEEecCCcEEEEEEEEEcc
Confidence 677776432210 2455544443322 77899999999999854
Q ss_pred -CCCCcEEEEEECCEeccC-CCceEEEe-------e--CcEEEEEEcccCcCCc-EEEEEEEEcCCeeeEEEEEEEEee
Q psy2148 1082 -SDPTMRIDWFFNGRPFAT-GSRVKTVY-------D--FGFISLDMDYVYARDS-GEYICRATNKWGTAMTKAKVICKA 1148 (1884)
Q Consensus 1082 -~~p~~~v~W~k~~~~l~~-~~~~~~~~-------~--~~~~~l~i~~~~~~d~-G~Y~C~a~n~~G~~~~~~~l~v~~ 1148 (1884)
+.|.+.|.|+|+|..+.. +.++.... + .....|.|.++..+|+ |.|+|.|.|..|.....+.|.|..
T Consensus 255 ~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp CTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred CCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 578999999999998876 22222110 1 1134599999999999 999999999999999999998865
No 62
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.95 E-value=1.1e-24 Score=270.75 Aligned_cols=185 Identities=23% Similarity=0.345 Sum_probs=156.0
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEccC-----CCcEEEEeeCCeEEEEEccCCCCCCeE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKALSA-----GSRIKTINDFGFVILEINDVYLRDSGL 988 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~ 988 (1884)
+|.|.. +.+.++.+|+.+.|.|.+. |.|.+.|+|+|+ |..|.. +.++.+..+.+...|.|.+++.+|+|.
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~--g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 77 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEE--CSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEee--cccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEE
Confidence 477776 6788899999999999998 788899999999 998865 567777766677799999999999999
Q ss_pred EEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCC
Q psy2148 989 YTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPE 1068 (1884)
Q Consensus 989 Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 1068 (1884)
|+|.|.|..|..+..+.|.|..+|.+... + ....+.+
T Consensus 78 Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~------------------------------------~-------~~~~~~~ 114 (389)
T 2jll_A 78 YDCEAASRIGGHQKSMYLDIEYAPKFISN------------------------------------Q-------TIYYSWE 114 (389)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEEEECCS------------------------------------C-------CEEEECT
T ss_pred EEEEEEeCCCCcceEEEEEEEeCCEEecC------------------------------------c-------ceEEecc
Confidence 99999999999999999999876653211 1 1135678
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEECCEeccCCC--ceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEE
Q psy2148 1069 AGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGS--RVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1069 g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v 1146 (1884)
|+.+.|.|.+. |.|.+.|.|+|+|..+..+. ++.+..++....|.|.++..+|+|.|+|.|.|..|.....+.|.+
T Consensus 115 g~~~~l~C~~~--g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v 192 (389)
T 2jll_A 115 GNPINISCDVK--SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192 (389)
T ss_dssp TCCEEEEECEE--EESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEEEEE--ecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 99999999998 77889999999999998654 566666666778999999999999999999999999888887776
Q ss_pred ee
Q psy2148 1147 KA 1148 (1884)
Q Consensus 1147 ~~ 1148 (1884)
..
T Consensus 193 ~~ 194 (389)
T 2jll_A 193 AD 194 (389)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 63
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.95 E-value=5.4e-27 Score=286.28 Aligned_cols=283 Identities=17% Similarity=0.206 Sum_probs=176.7
Q ss_pred CeEEEccCCccccccccceEEEEEEeeCCCCC-----------CeEEEeecCee------cC-CCCCceeeeeCceEEEE
Q psy2148 1425 PRFVTQIKTQDQLVEMQSTKFECQLAPVGDPN-----------MKVEWFLNGKP------LP-HKNRFNPIYDFGYVAMN 1486 (1884)
Q Consensus 1425 P~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~-----------~~i~W~~~~~~------l~-~~~~~~~~~~~~~~~L~ 1486 (1884)
+.+...+.....+.+|+.+.|.|.+. |.|. +.|.|+|++.. +. ......+...++ .|.
T Consensus 7 ~~~~~~~~~~v~v~~G~~v~L~C~~~--~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~--~L~ 82 (349)
T 4dep_C 7 DDWGLDTMRQIQVFEDEPARIKCPLF--EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD--VLW 82 (349)
T ss_dssp EEEEECCCCCCEEETTSCEEEECTCC--CCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETT--EEE
T ss_pred cccccceeeeEEEecCCeEEEEcccc--ccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCC--EEE
Confidence 33444445556689999999999986 7664 99999999842 21 012223333444 799
Q ss_pred EeeeccCCCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEe
Q psy2148 1487 FGWVYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFV 1566 (1884)
Q Consensus 1487 i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 1566 (1884)
|.+++.+|+|.|+|.|.|..|....++.|.|..+|... ++ ..
T Consensus 83 i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~-------------------------------------~~-~~ 124 (349)
T 4dep_C 83 FRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCF-------------------------------------NS-PM 124 (349)
T ss_dssp ESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTS-------------------------------------CC-SC
T ss_pred EccCChhhCEEEEEEEecCCceEEEEEEEEEecCCccc-------------------------------------Cc-cc
Confidence 99999999999999999999988888889887543210 00 00
Q ss_pred cCCcccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecC
Q psy2148 1567 SQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKI 1646 (1884)
Q Consensus 1567 ~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 1646 (1884)
. .+
T Consensus 125 ~-----------------------------------------------------------------------------~~ 127 (349)
T 4dep_C 125 K-----------------------------------------------------------------------------LP 127 (349)
T ss_dssp C-----------------------------------------------------------------------------CC
T ss_pred c-----------------------------------------------------------------------------cC
Confidence 0 01
Q ss_pred CceeecCCCeEEEEEEE-----eccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCC-ce
Q psy2148 1647 QPCRAFEQDQARFEVEF-----DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG-GK 1720 (1884)
Q Consensus 1647 ~~~~v~~G~~~~l~C~~-----~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~-g~ 1720 (1884)
....+.+|+.+.|.|.+ .|.|.+.++|+|++..+....+ +... ...|.|.++..+|+|.|+|.|.|.. |.
T Consensus 128 ~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~--~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~~g~ 203 (349)
T 4dep_C 128 VHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNN--VIPE--GMNLSFLIALISNNGNYTCVVTYPENGR 203 (349)
T ss_dssp EEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSS--EEEE--TTEEEEESCCGGGCEEEEEEEEEEETTE
T ss_pred cceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccc--eeec--CCEEEEeeeeecCCcEEEEEEEEeeCCE
Confidence 12245567777777764 6789999999999998865433 3322 2579999999999999999999986 55
Q ss_pred E---EEEEEEEEEecccCCCCCCCCCeEEeccCce--EEcCCceEEEEEEEe----cCCCcEEEEEeCCEecCC-CCCeE
Q psy2148 1721 A---KCSANLVVEEKRQGGRGGVVPPSFLTTISSA--VINVGQLARFDAKIS----ATKPLDVYWLKNGKKIIP-DIRYK 1790 (1884)
Q Consensus 1721 ~---~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~--~~~~G~~~~l~C~~~----g~p~p~v~W~k~~~~l~~-~~~~~ 1790 (1884)
. ...+.|.|...+.. ..+|.+...+... .+..|+.++|.|.+. |.|.|.|.|+|+|..+.. ..++.
T Consensus 204 ~~~~~~~~~l~v~~~~~~----~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~ 279 (349)
T 4dep_C 204 TFHLTRTLTVKVVGSPKN----AVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVT 279 (349)
T ss_dssp EEEEEEEEEEEEECCGGG----CCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CC
T ss_pred EEEEEEEEEEEEEccCCC----CCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccc
Confidence 4 56777777753221 0267776655433 788999999999999 678999999999998876 33333
Q ss_pred Eee-------cC--CeEEEEEccCCCCCC-EEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1791 TLE-------ED--NLFTLLIIEAVVEDS-GAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1791 ~~~-------~~--~~~~L~i~~~~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
+.. .+ ....|.|.++..+|. |.|+|.|.|..|....++.|.|..
T Consensus 280 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 280 INESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp CCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred cccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 211 11 133599999999999 999999999999999999999965
No 64
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.94 E-value=4.4e-26 Score=270.09 Aligned_cols=272 Identities=15% Similarity=0.156 Sum_probs=196.4
Q ss_pred CCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEE
Q psy2148 1424 PPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRAT 1503 (1884)
Q Consensus 1424 pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~ 1503 (1884)
||.+. .......+.+|+.++|.|.+. | .|.|++++... .......+..+|.|.+++.+|+|.|+|.|.
T Consensus 4 ~p~i~-~~~~~~~v~~G~~v~L~C~~~--~----~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 71 (289)
T 3ejj_X 4 APVIE-PSGPELVVEPGETVTLRCVSN--G----SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTGTYRCTEL 71 (289)
T ss_dssp CCEEE-SCSSEEEECTTCCEEEEEECS--S----CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCEEEEEECC
T ss_pred CcEec-CCCceEEECCCCCEEEEEEeC--C----cEEEccCCCce-----EEEeccCCccEEEEeeeccccCEEEEEEEe
Confidence 44444 333445688999999999975 5 49999876432 222334455689999999999999999999
Q ss_pred ecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEE
Q psy2148 1504 NLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFC 1583 (1884)
Q Consensus 1504 n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~ 1583 (1884)
|..|.....+.|.|.++|.. +...+..
T Consensus 72 ~~~~~~~~~~~l~V~~~~~~-----------------------------------------~~~~~~~------------ 98 (289)
T 3ejj_X 72 EDPMAGSTTIHLYVKDPAHS-----------------------------------------WNLLAQE------------ 98 (289)
T ss_dssp C-----CEEEEEEECCSSCS-----------------------------------------EEESCSE------------
T ss_pred ccCCcceeEEEEEEeCCCcc-----------------------------------------eecccce------------
Confidence 99888778888888643211 2222222
Q ss_pred EEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEEE
Q psy2148 1584 TRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVEF 1663 (1884)
Q Consensus 1584 C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~ 1663 (1884)
..+.+|+.+.|.|.+
T Consensus 99 -----------------------------------------------------------------~~v~~g~~v~L~C~~ 113 (289)
T 3ejj_X 99 -----------------------------------------------------------------VTVVEGQEAVLPCLI 113 (289)
T ss_dssp -----------------------------------------------------------------EEEETTSCEEECEEE
T ss_pred -----------------------------------------------------------------EEEecCCceEeEEEc
Confidence 344456666666666
Q ss_pred eccCCCe-EEEEe-CCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEE-eCCceEEEEEEEEEEecccCCCCCC
Q psy2148 1664 DGDPLPT-IKWFR-EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE-NRGGKAKCSANLVVEEKRQGGRGGV 1740 (1884)
Q Consensus 1664 ~g~p~~~-i~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~-n~~g~~~~~~~l~V~~~~~~~~~~~ 1740 (1884)
.|.|.+. +.|++ ++..+....++.+. ....|.|.++..+|+|.|+|.|. |..+.....+.|.|.....
T Consensus 114 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~------ 184 (289)
T 3ejj_X 114 TDPALKDSVSLMREGGRQVLRKTVYFFS---PWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHP------ 184 (289)
T ss_dssp SCGGGGGSEEEEEGGGEECCTTCCEEEE---TTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCC------
T ss_pred cCCCcceEEEEEecCCeecCCCccEEEC---CCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCC------
Confidence 6655544 77764 55555555444432 33569999999999999999999 5556667778888885332
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEec-CCCcEEEEEeCCEecCCCCCeEEeec--CCeEEEEEccCCCCCCEEEEEEE
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISA-TKPLDVYWLKNGKKIIPDIRYKTLEE--DNLFTLLIIEAVVEDSGAYECVA 1817 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~k~~~~l~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a 1817 (1884)
.+|.+...+....+.+|+.++|.|.+.| .|.|.|.|++++..+........... .....|.|.++..+|+|.|+|.|
T Consensus 185 ~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 264 (289)
T 3ejj_X 185 EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVA 264 (289)
T ss_dssp CCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEE
T ss_pred CCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEE
Confidence 4789998888888899999999999999 79999999999999866433222111 12458999999999999999999
Q ss_pred EeCCeeEEEEEEEEEEe
Q psy2148 1818 MNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1818 ~N~~G~~~~~~~l~V~~ 1834 (1884)
.|..|..++++.|.+..
T Consensus 265 ~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 265 SNDVGTRTATMNFQVVE 281 (289)
T ss_dssp ECSSCEEEEEEEEECC-
T ss_pred EcCCCCccccEEEEEEe
Confidence 99999999999999876
No 65
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.94 E-value=9e-25 Score=271.47 Aligned_cols=271 Identities=18% Similarity=0.179 Sum_probs=203.6
Q ss_pred CeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeC--CccCCC-----CCCeEEEeeCCEEEEEEcccCcCCCeE
Q psy2148 707 PVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWN--GKPMKT-----GSRFRTFCDFGFVILEISPVYPEDCGQ 779 (1884)
Q Consensus 707 p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~--g~~l~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~ 779 (1884)
|.|..+ .+. .+.+|++++|.|.+. |.|.+.++|+|+ |..|.. ..++.+..+.+...|.|.+++.+|+|.
T Consensus 2 P~i~~~-~~~-~~~~G~~v~l~C~~~--g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 77 (389)
T 2jll_A 2 PHIIQL-KNE-TTYENGQVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77 (389)
T ss_dssp CEEEEC-CCE-EEETTSEEEEEEEEE--CSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEE
T ss_pred CeEEec-Cce-EEeCCCeEEEEEEee--cccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEE
Confidence 455542 332 577899999999998 688899999999 888765 457777766677899999999999999
Q ss_pred EEEEEEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccc
Q psy2148 780 YSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRS 859 (1884)
Q Consensus 780 Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~ 859 (1884)
|+|.|.|..|..+..+.|.|..+|.+
T Consensus 78 Y~C~a~n~~g~~~~~~~l~V~~~P~~------------------------------------------------------ 103 (389)
T 2jll_A 78 YDCEAASRIGGHQKSMYLDIEYAPKF------------------------------------------------------ 103 (389)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEEEE------------------------------------------------------
T ss_pred EEEEEEeCCCCcceEEEEEEEeCCEE------------------------------------------------------
Confidence 99999999999988888888654432
Q ss_pred eEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEE
Q psy2148 860 IILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECR 939 (1884)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~ 939 (1884)
...+....+.+|+.+.|.|.
T Consensus 104 ------------------------------------------------------------~~~~~~~~~~~g~~~~l~C~ 123 (389)
T 2jll_A 104 ------------------------------------------------------------ISNQTIYYSWEGNPINISCD 123 (389)
T ss_dssp ------------------------------------------------------------CCSCCEEEECTTCCEEEEEC
T ss_pred ------------------------------------------------------------ecCcceEEeccCCEEEEEEE
Confidence 22233346788999999999
Q ss_pred EeeCCCCCcEEEEeeCCEEccCCC--cEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccc
Q psy2148 940 LTPTNDPSMTVEWFHNGKALSAGS--RIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVE 1017 (1884)
Q Consensus 940 v~~~~~P~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~ 1017 (1884)
+. +.|.+.|+|+|+|..|.... ++.+...+....|.|.++..+|+|.|+|.|.|..|..+..+.|.|...|.
T Consensus 124 ~~--g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~---- 197 (389)
T 2jll_A 124 VK--SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS---- 197 (389)
T ss_dssp EE--EESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC----
T ss_pred EE--ecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC----
Confidence 98 66889999999999997654 67777777778999999999999999999999999999888888865432
Q ss_pred cchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEee--CCCCCc--EEEEEEC
Q psy2148 1018 PQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEP--KSDPTM--RIDWFFN 1093 (1884)
Q Consensus 1018 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~--~~~p~~--~v~W~k~ 1093 (1884)
+|.... +....+..+.|.|.... .+.|.. .+.|.++
T Consensus 198 -----------------------------------~P~~~~-----~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~ 237 (389)
T 2jll_A 198 -----------------------------------SPYGVK-----IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV 237 (389)
T ss_dssp -----------------------------------CCEEEE-----EEEECSSCEEEEEECCSCCTTSCEEEEEEEEEET
T ss_pred -----------------------------------CCcceE-----EeeccCCEEEEEEeCCCCCCCcceEEEEEEEEEC
Confidence 231111 11123567888887531 233432 5788887
Q ss_pred CEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEE
Q psy2148 1094 GRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVI 1145 (1884)
Q Consensus 1094 ~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~ 1145 (1884)
+.... ...........|.|.++...+.|.|+|.|.|..|....+..+.
T Consensus 238 ~~~~~----~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~ 285 (389)
T 2jll_A 238 ASEIW----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEI 285 (389)
T ss_dssp TCSCC----EEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEE
T ss_pred CCccc----EEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceE
Confidence 65321 1222223345799999999999999999999999765444333
No 66
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.94 E-value=2.2e-27 Score=285.13 Aligned_cols=268 Identities=19% Similarity=0.258 Sum_probs=196.3
Q ss_pred cccCCCCcEEEEEEEeecCCC-CCeEEEeeCCccCC----CCCCeEEEeeCCEEEEEEcccCcCCCeEEEEEEEecCceE
Q psy2148 717 DDLREGENAHFEARLTPTDDP-KLKVEWFWNGKPMK----TGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEA 791 (1884)
Q Consensus 717 ~~v~~G~~~~l~C~~~~~g~p-~~~v~W~k~g~~l~----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~ 791 (1884)
..+.+|+++.|.|.+.+ .| .+.++|+|+|..+. ...++... ++ .|.|.+++.+|+|.|+|.|.|..|..
T Consensus 15 ~~v~~G~~v~L~C~~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~ 88 (315)
T 1itb_B 15 LVSSANEIDVRPCPLNP--NEHKGTITWYKDDSKTPVSTEQASRIHQH--KE--KLWFVPAKVEDSGHYYCVVRNSSYCL 88 (315)
T ss_dssp CEEETTSCCCCBCCCCS--CCCSSCCCEECTTSCSCSCCCTTSSSEEC--SS--BEECTTCCGGGCSCCEECCCSSSCCC
T ss_pred EEEcCCCcEEEEeeccC--cCCCceEEEEeCCCcCccccccCCcEecc--CC--eEEECCCChhhCEEEEEEEeCCceEE
Confidence 36899999999999884 44 78999999987542 23333332 22 79999999999999999999987765
Q ss_pred EEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEeecCCCCcc
Q psy2148 792 VTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGME 871 (1884)
Q Consensus 792 ~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~~~~~~~~~ 871 (1884)
.....+.|..
T Consensus 89 ~~~~~v~v~~---------------------------------------------------------------------- 98 (315)
T 1itb_B 89 RIKISAKFVE---------------------------------------------------------------------- 98 (315)
T ss_dssp CEECCCEEEC----------------------------------------------------------------------
T ss_pred EEEEEEEEeC----------------------------------------------------------------------
Confidence 5444333211
Q ss_pred cccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeec---CCceeecCCCeEEEEEEE------ee
Q psy2148 872 GTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTT---PTDLTLAESTLAHFECRL------TP 942 (1884)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~v~~G~~v~l~C~v------~~ 942 (1884)
.+|.+... .....+.+|+.+.|.|.+ .
T Consensus 99 -------------------------------------------~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~- 134 (315)
T 1itb_B 99 -------------------------------------------NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE- 134 (315)
T ss_dssp -------------------------------------------CCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTT-
T ss_pred -------------------------------------------CCCCcccccccccceEEecCCCeEEEEecccccccC-
Confidence 11111111 123567889999999998 5
Q ss_pred CCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE-cCCeeE---EEEEEEEEEeeccccccc
Q psy2148 943 TNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT-NKHGEA---TTSCKLTVKGRQGIDVEP 1018 (1884)
Q Consensus 943 ~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-N~~G~~---~~~~~l~V~~~~~~~~~p 1018 (1884)
+.|.+.|+|+|+|..+..+.... ...++ .|.|.+++.+|+|.|+|.|. |..|.. +..+.|.+....
T Consensus 135 -g~p~~~i~W~k~~~~l~~~~~~~-~~~~~--~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~------ 204 (315)
T 1itb_B 135 -NNELPKLQWYKDCKPLLLDNIHF-SGVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN------ 204 (315)
T ss_dssp -TTCCCCCEEEETTEECCCCSSSE-EEETT--EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC------
T ss_pred -CCCCCEEEEEECCEECCCccceE-eecCc--eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC------
Confidence 78889999999999996543322 22233 69999999999999999999 788876 334444443211
Q ss_pred chhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEecc
Q psy2148 1019 QVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFA 1098 (1884)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~ 1098 (1884)
...+|.+.....+.+.+.+|+.+.|.|.+. |.|.+.|.|++||..+.
T Consensus 205 -------------------------------~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~--g~P~p~i~W~~~g~~i~ 251 (315)
T 1itb_B 205 -------------------------------KPTRPVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVID 251 (315)
T ss_dssp -------------------------------CCCCCEECSCCSEEEECCSSSCEEEEEEEE--ECTTSEEEEEETTEECC
T ss_pred -------------------------------CCCCCEEecCCCCcEEEeCCCcEEEEEEEe--cCCCCeeEEEECCEECC
Confidence 114666665554446788999999999998 78889999999999998
Q ss_pred CCCceEE-----Eee-------CcEEEEEEcccCcCC-cEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1099 TGSRVKT-----VYD-------FGFISLDMDYVYARD-SGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1099 ~~~~~~~-----~~~-------~~~~~l~i~~~~~~d-~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
.+..... ... .....|.|.++..+| +|.|+|.|.|.+|.+..++.|.|.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 252 EDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp TTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred cccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 7643221 111 123589999999999 999999999999999999999875
No 67
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.94 E-value=3.9e-26 Score=273.49 Aligned_cols=268 Identities=17% Similarity=0.180 Sum_probs=191.3
Q ss_pred ccCCCCcEEEEEEEeecCCCCC---eEEEeeCCccC-------------CCCCCeEEEee-----CCEEEEEEcccCcCC
Q psy2148 718 DLREGENAHFEARLTPTDDPKL---KVEWFWNGKPM-------------KTGSRFRTFCD-----FGFVILEISPVYPED 776 (1884)
Q Consensus 718 ~v~~G~~~~l~C~~~~~g~p~~---~v~W~k~g~~l-------------~~~~~~~~~~~-----~~~~~L~i~~~~~~d 776 (1884)
.+..|++++|.|.+.+.+.|.. .++|+|+|... ....++++... .+..+|.|.+++.+|
T Consensus 11 ~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D 90 (313)
T 4fqp_A 11 PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVED 90 (313)
T ss_dssp CCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGG
T ss_pred EEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhh
Confidence 6789999999999985322221 48999988643 22233333211 123569999999999
Q ss_pred CeEEEEEEEe-cCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEe
Q psy2148 777 CGQYSCRAYN-DYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQ 855 (1884)
Q Consensus 777 ~G~Y~C~a~N-~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~ 855 (1884)
+|.|+|.|.+ ..|..+..+.|.|...|
T Consensus 91 ~G~Y~C~v~~~~~~~~~~~~~l~v~~~P---------------------------------------------------- 118 (313)
T 4fqp_A 91 EGNYTCLFVTFPQGSRSVDIWLRVLAKP---------------------------------------------------- 118 (313)
T ss_dssp CEEEEEEEECSSSCEEEEEEEECCBBCC----------------------------------------------------
T ss_pred CEEEEEEEeeccCcceeeeeeeeeccCC----------------------------------------------------
Confidence 9999998854 44555555555443332
Q ss_pred cccceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEE
Q psy2148 856 GKRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAH 935 (1884)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~ 935 (1884)
.+...+....+..|+.+.
T Consensus 119 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 136 (313)
T 4fqp_A 119 --------------------------------------------------------------QNTAEVQKVQLTGEPVPM 136 (313)
T ss_dssp --------------------------------------------------------------EEEEEECCBCCCSSCEEE
T ss_pred --------------------------------------------------------------cceecccceEeecCceEE
Confidence 333333444566788899
Q ss_pred EEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCC---eEEEEEccCCCCCCeEEEEEEEcCCeeE--EEEEEEEEEe
Q psy2148 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFG---FVILEINDVYLRDSGLYTCKATNKHGEA--TTSCKLTVKG 1010 (1884)
Q Consensus 936 l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~~ 1010 (1884)
|.|.+.+ +.|.+.++|++++..+....+.....++. .+.|.|..+..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 137 ~~C~~~~-~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~ 215 (313)
T 4fqp_A 137 ARCVSTG-GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY 215 (313)
T ss_dssp EEEEEEE-EBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE
T ss_pred EEEEccC-ccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc
Confidence 9998874 67889999999998886544433322222 2369999999999999999999987654 4445555553
Q ss_pred ecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEE
Q psy2148 1011 RQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RID 1089 (1884)
Q Consensus 1011 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~ 1089 (1884)
+ |.+.....+...+.+|+.++|.|.+. |.|.| .|.
T Consensus 216 ~------------------------------------------P~v~~~~~~~~~~~~g~~v~l~C~~~--g~P~p~~v~ 251 (313)
T 4fqp_A 216 P------------------------------------------PEVSISGYDNNWYLGQNEATLTCDAR--SNPEPTGYN 251 (313)
T ss_dssp E------------------------------------------EEEEEECCCSCEETTCCCEEEEEEEE--EESCCCEEE
T ss_pred C------------------------------------------CccccccccceeecCCCeEEEEEEec--CCCCCcEEE
Confidence 3 33433333335566789999999998 77877 699
Q ss_pred EEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeecc
Q psy2148 1090 WFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKH 1150 (1884)
Q Consensus 1090 W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~ 1150 (1884)
|+|+|..+..+.. .+++ .|.|.++..+|+|.|+|.|.|.+|..+.++.|.|..+|
T Consensus 252 W~~~~~~l~~~~~----~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 306 (313)
T 4fqp_A 252 WSTTMGPLPPFAV----AQGA--QLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP 306 (313)
T ss_dssp EEETTBSCCTTEE----EETT--EEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred EEECCEECCCceE----EeCC--EEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence 9999999876421 2233 69999999999999999999999999999999998654
No 68
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.94 E-value=9.6e-26 Score=267.17 Aligned_cols=268 Identities=17% Similarity=0.172 Sum_probs=197.7
Q ss_pred CccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEEEEecCceEEEE
Q psy2148 715 NIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTS 794 (1884)
Q Consensus 715 ~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~ 794 (1884)
....+.+|++++|.|.+. + .++|++++... ...........|.|.+++.+|+|.|+|.|.|..|..+..
T Consensus 12 ~~~~v~~G~~v~L~C~~~--~----~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 80 (289)
T 3ejj_X 12 PELVVEPGETVTLRCVSN--G----SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT 80 (289)
T ss_dssp SEEEECTTCCEEEEEECS--S----CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEE
T ss_pred ceEEECCCCCEEEEEEeC--C----cEEEccCCCce-----EEEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeE
Confidence 334789999999999986 3 59999876532 122233344689999999999999999999988877777
Q ss_pred EEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEeecCCCCccccc
Q psy2148 795 ASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEGTI 874 (1884)
Q Consensus 795 ~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~~~~~~~~~~~~ 874 (1884)
+.|.|..+|..
T Consensus 81 ~~l~V~~~~~~--------------------------------------------------------------------- 91 (289)
T 3ejj_X 81 IHLYVKDPAHS--------------------------------------------------------------------- 91 (289)
T ss_dssp EEEEECCSSCS---------------------------------------------------------------------
T ss_pred EEEEEeCCCcc---------------------------------------------------------------------
Confidence 77766432211
Q ss_pred ceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcE-EEEe
Q psy2148 875 DKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMT-VEWF 953 (1884)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~-v~W~ 953 (1884)
+...+....+.+|+.+.|.|.+. +.|.+. ++|+
T Consensus 92 --------------------------------------------~~~~~~~~~v~~g~~v~L~C~~~--~~~~~~~v~W~ 125 (289)
T 3ejj_X 92 --------------------------------------------WNLLAQEVTVVEGQEAVLPCLIT--DPALKDSVSLM 125 (289)
T ss_dssp --------------------------------------------EEESCSEEEEETTSCEEECEEES--CGGGGGSEEEE
T ss_pred --------------------------------------------eecccceEEEecCCceEeEEEcc--CCCcceEEEEE
Confidence 33344567889999999999998 445544 9998
Q ss_pred e-CCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE-cCCeeEEEEEEEEEEeecccccccchhHhHhcchhhH
Q psy2148 954 H-NGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT-NKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNI 1031 (1884)
Q Consensus 954 ~-~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~ 1031 (1884)
+ ++..+..+.++.+...+ .|.|.+++.+|+|.|+|.|. |..|..+..+.|.|...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~------------------- 183 (289)
T 3ejj_X 126 REGGRQVLRKTVYFFSPWR---GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVH------------------- 183 (289)
T ss_dssp EGGGEECCTTCCEEEETTT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSC-------------------
T ss_pred ecCCeecCCCccEEECCCC---CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECC-------------------
Confidence 6 78888888887765443 59999999999999999999 666777778888887421
Q ss_pred HHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEe--eC
Q psy2148 1032 QKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVY--DF 1109 (1884)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~--~~ 1109 (1884)
..+|.+...... ..+.+|+.+.|.|.+.+ +.|.+.|.|+++|..+.......... ..
T Consensus 184 -------------------~~~p~i~~~~~~-~~~~~g~~~~l~C~~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 242 (289)
T 3ejj_X 184 -------------------PEPPQIKLEPSK-LVRIRGEAAQIVCSATN-AEVGFNVILKRGDTKLEIPLNSDFQDNYYK 242 (289)
T ss_dssp -------------------CCCCEEEEESSS-EECCSSSCEEEEEEEEE-SSSCCEEEEEETTEECCCCEEEEECSSSEE
T ss_pred -------------------CCCCeEEecCCc-eEEEeCCcEEEEEEeCC-CCCceEEEEEECCEEeeccCCcccccceEE
Confidence 135556555444 56678999999999983 37889999999999987643322111 11
Q ss_pred cEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeeccc
Q psy2148 1110 GFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHD 1151 (1884)
Q Consensus 1110 ~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~ 1151 (1884)
....|.|.++..+|+|.|+|.|.|..|.+++++.|.+..++.
T Consensus 243 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~ 284 (289)
T 3ejj_X 243 KVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH 284 (289)
T ss_dssp EEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred eeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence 245899999999999999999999999999999999876544
No 69
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.94 E-value=5.7e-27 Score=281.52 Aligned_cols=274 Identities=16% Similarity=0.212 Sum_probs=201.1
Q ss_pred ccccccccceEEEEEEeeCCCC-CCeEEEeecCeecCC--CCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceE
Q psy2148 1434 QDQLVEMQSTKFECQLAPVGDP-NMKVEWFLNGKPLPH--KNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDE 1510 (1884)
Q Consensus 1434 ~~~v~~g~~~~l~C~~~~~g~p-~~~i~W~~~~~~l~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~ 1510 (1884)
...+.+|+.+.|.|.+. |.| .+.|.|+|+|..+.. .....+...++ .|.|.+++.+|+|.|+|.|.|..|...
T Consensus 14 ~~~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 89 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLN--PNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLR 89 (315)
T ss_dssp CCEEETTSCCCCBCCCC--SCCCSSCCCEECTTSCSCSCCCTTSSSEECSS--BEECTTCCGGGCSCCEECCCSSSCCCC
T ss_pred EEEEcCCCcEEEEeecc--CcCCCceEEEEeCCCcCccccccCCcEeccCC--eEEECCCChhhCEEEEEEEeCCceEEE
Confidence 34588999999999986 777 789999999875432 12222233334 799999999999999999999988766
Q ss_pred EEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEEEEEecCC
Q psy2148 1511 TRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYP 1590 (1884)
Q Consensus 1511 ~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p 1590 (1884)
....+.|... +|.+...+
T Consensus 90 ~~~~v~v~~~-----------------------------------------~p~~~~~~--------------------- 107 (315)
T 1itb_B 90 IKISAKFVEN-----------------------------------------EPNLCYNA--------------------- 107 (315)
T ss_dssp EECCCEEECC-----------------------------------------CTTSSSCG---------------------
T ss_pred EEEEEEEeCC-----------------------------------------CCCccccc---------------------
Confidence 5544444221 11110000
Q ss_pred CCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEEE------e
Q psy2148 1591 RPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVEF------D 1664 (1884)
Q Consensus 1591 ~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~------~ 1664 (1884)
.......+.+|+.+.|.|.+ .
T Consensus 108 -----------------------------------------------------~~~~~~~~~~g~~v~l~C~~~~~~~~~ 134 (315)
T 1itb_B 108 -----------------------------------------------------QAIFKQKLPVAGDGGLVCPYMEFFKNE 134 (315)
T ss_dssp -----------------------------------------------------GGEEEEEEETTSCEEEECSSCTTTCTT
T ss_pred -----------------------------------------------------ccccceEEecCCCeEEEEecccccccC
Confidence 00012345678888888887 7
Q ss_pred ccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEE-eCCceE---EEEEEEEEEecccCCCCCC
Q psy2148 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE-NRGGKA---KCSANLVVEEKRQGGRGGV 1740 (1884)
Q Consensus 1665 g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~-n~~g~~---~~~~~l~V~~~~~~~~~~~ 1740 (1884)
|.|.+.++|+|++..+..... ++.. ....|.|.++..+|+|.|+|.|. |..|.. ...+.+.+..... .
T Consensus 135 g~p~~~i~W~k~~~~l~~~~~-~~~~--~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~-----~ 206 (315)
T 1itb_B 135 NNELPKLQWYKDCKPLLLDNI-HFSG--VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK-----P 206 (315)
T ss_dssp TTCCCCCEEEETTEECCCCSS-SEEE--ETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCC-----C
T ss_pred CCCCCEEEEEECCEECCCccc-eEee--cCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCC-----C
Confidence 899999999999998865432 2222 24479999999999999999999 788876 3445554543221 1
Q ss_pred CCCeEEeccCc-eEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEE-----eec-------CCeEEEEEccCCC
Q psy2148 1741 VPPSFLTTISS-AVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKT-----LEE-------DNLFTLLIIEAVV 1807 (1884)
Q Consensus 1741 ~~P~~~~~~~~-~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~-----~~~-------~~~~~L~i~~~~~ 1807 (1884)
.+|.|...+.. ..+.+|+.++|.|.+.|.|.|.|.|+|+|..+....+... ... .....|.|.++..
T Consensus 207 ~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 286 (315)
T 1itb_B 207 TRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES 286 (315)
T ss_dssp CCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG
T ss_pred CCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCH
Confidence 57888765554 5788999999999999999999999999999987653221 111 1234899999999
Q ss_pred CC-CEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1808 ED-SGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1808 ~d-~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
+| +|.|+|.|.|..|....++.|.|..
T Consensus 287 ~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 314 (315)
T 1itb_B 287 RFYKHPFTCFAKNTHGIDAAYIQLIYPV 314 (315)
T ss_dssp GGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred HHcCCceEEEEecCCCceeEEEEEEecC
Confidence 99 9999999999999999999998853
No 70
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.94 E-value=5.4e-26 Score=272.27 Aligned_cols=267 Identities=15% Similarity=0.138 Sum_probs=191.2
Q ss_pred cccccccceEEEEEEeeCCCCCC-----eEEEeecCeecC-------------CCCCceeee-----eCceEEEEEeeec
Q psy2148 1435 DQLVEMQSTKFECQLAPVGDPNM-----KVEWFLNGKPLP-------------HKNRFNPIY-----DFGYVAMNFGWVY 1491 (1884)
Q Consensus 1435 ~~v~~g~~~~l~C~~~~~g~p~~-----~i~W~~~~~~l~-------------~~~~~~~~~-----~~~~~~L~i~~~~ 1491 (1884)
..+..|++++|.|.+. +.|.+ .|+|+|++.... ...++.... ..+..+|.|.+++
T Consensus 10 v~~~~G~~v~L~C~v~--~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~ 87 (313)
T 4fqp_A 10 VPGFLGDSVTLPCYLQ--VPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLR 87 (313)
T ss_dssp ECCBTTSCEEECCEEE--CCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCC
T ss_pred EEEecCCCEEEEEEEE--CCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCC
Confidence 3477899999999997 66654 499999886432 222222211 1134579999999
Q ss_pred cCCCeEEEEEEE-ecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCc
Q psy2148 1492 PEDSGEYLCRAT-NLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPE 1570 (1884)
Q Consensus 1492 ~~d~G~Y~c~a~-n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 1570 (1884)
.+|+|.|+|.+. |..|.....+.|.|.. +|.+...+.
T Consensus 88 ~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~------------------------------------------~P~~~~~~~ 125 (313)
T 4fqp_A 88 VEDEGNYTCLFVTFPQGSRSVDIWLRVLA------------------------------------------KPQNTAEVQ 125 (313)
T ss_dssp GGGCEEEEEEEECSSSCEEEEEEEECCBB------------------------------------------CCEEEEEEC
T ss_pred hhhCEEEEEEEeeccCcceeeeeeeeecc------------------------------------------CCcceeccc
Confidence 999999999886 4566666666666543 344555555
Q ss_pred ccccccCCceEEEEEEe-cCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCce
Q psy2148 1571 AQKVQEGEPARFCTRVT-GYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPC 1649 (1884)
Q Consensus 1571 ~~~v~~g~~~~l~C~~~-g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 1649 (1884)
...+..|+.+.+.|.+. |+|.+.+.|++++..+......
T Consensus 126 ~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~---------------------------------------- 165 (313)
T 4fqp_A 126 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV---------------------------------------- 165 (313)
T ss_dssp CBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEE----------------------------------------
T ss_pred ceEeecCceEEEEEEccCccCCcEEEeecCCcccccccee----------------------------------------
Confidence 55667778888888764 6788888888887655320000
Q ss_pred eecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceE--EEEEEE
Q psy2148 1650 RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA--KCSANL 1727 (1884)
Q Consensus 1650 ~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~--~~~~~l 1727 (1884)
....+..+.+ .+.|.|.++..+|+|.|+|.|.|..+.. ...+.|
T Consensus 166 -----------------------------~~~~~~~~~~-----~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l 211 (313)
T 4fqp_A 166 -----------------------------PGFLSGTVTV-----TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL 211 (313)
T ss_dssp -----------------------------ECSSTTCEEE-----EEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEEC
T ss_pred -----------------------------eeeccccccc-----ceeeeecccccccCeeEEEEEEccCcCccceeeeec
Confidence 0000011111 2358999999999999999999987654 444555
Q ss_pred EEEecccCCCCCCCCCeEEe-ccCceEEcCCceEEEEEEEecCCCc-EEEEEeCCEecCCCCCeEEeecCCeEEEEEccC
Q psy2148 1728 VVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISATKPL-DVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEA 1805 (1884)
Q Consensus 1728 ~V~~~~~~~~~~~~~P~~~~-~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~ 1805 (1884)
.|. .+|.+.. ......+..|+.++|.|.+.|+|.| .|+|+|+|..+.... .... . .|.|.++
T Consensus 212 ~V~----------~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---~~~~-~--~L~i~~v 275 (313)
T 4fqp_A 212 TVY----------YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---VAQG-A--QLLIRPV 275 (313)
T ss_dssp CBC----------EEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EEET-T--EEEECCC
T ss_pred ccc----------cCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce---EEeC-C--EEEECcC
Confidence 565 4677754 4455667789999999999999999 699999999886542 2222 2 7999999
Q ss_pred CCCCCEEEEEEEEeCCeeEEEEEEEEEEec
Q psy2148 1806 VVEDSGAYECVAMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1806 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 1835 (1884)
..+|+|.|+|.|.|..|..+.++.|.|.+.
T Consensus 276 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 305 (313)
T 4fqp_A 276 DKPINTTLICNVTNALGARQAELTVQVKEG 305 (313)
T ss_dssp SSCCEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred ChhhCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence 999999999999999999999999999874
No 71
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.94 E-value=4.3e-26 Score=274.85 Aligned_cols=263 Identities=17% Similarity=0.172 Sum_probs=193.3
Q ss_pred ccccccccceEEEEEEeeCC---------CCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCe-EEEEEEE
Q psy2148 1434 QDQLVEMQSTKFECQLAPVG---------DPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSG-EYLCRAT 1503 (1884)
Q Consensus 1434 ~~~v~~g~~~~l~C~~~~~g---------~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~c~a~ 1503 (1884)
...+.+|+.+.|.|.+. | .|.+.|+|+|++..+....+. ..++ .|.|.+++.+|+| .|+|.|.
T Consensus 38 ~v~v~eG~~v~L~C~~~--~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~---~~~~--~L~i~~v~~~D~Gs~Y~C~a~ 110 (329)
T 3oq3_B 38 NDMAALGEPFSAKCPPI--EDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR---VKNG--DLWIANYTSNDSHRRYLCTVT 110 (329)
T ss_dssp EEEECTTSCEEECCHHH--HCTTTGGGSCCTTCEEEEEECSSSCEECSTT---EETT--EEEESSCCGGGGGCCEEEEEE
T ss_pred eEEEECCCeEEEEccCC--CCccccccccCCCCeeEEEECCCCccccCce---eecc--eEEEcCCChHhCCCcEEEEEE
Confidence 34588999999999986 5 366899999999887654433 2334 7999999999999 9999999
Q ss_pred ecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEEE
Q psy2148 1504 NLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARFC 1583 (1884)
Q Consensus 1504 n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~ 1583 (1884)
|..|.......+.|... +|.+..
T Consensus 111 n~~g~~~~~~~~~v~~~-----------------------------------------~p~~~~---------------- 133 (329)
T 3oq3_B 111 TKNGDCVQGIVRSHIRK-----------------------------------------PPSCIP---------------- 133 (329)
T ss_dssp CTTSCEEEEEEEEEECC-----------------------------------------CCSCEE----------------
T ss_pred eCCCceeeEEEEEEEcC-----------------------------------------CCcEec----------------
Confidence 99987544433333211 111100
Q ss_pred EEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEEE
Q psy2148 1584 TRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVEF 1663 (1884)
Q Consensus 1584 C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~ 1663 (1884)
......+.+|+.+.|.|.+
T Consensus 134 -------------------------------------------------------------~~~~~~~~~G~~v~L~C~~ 152 (329)
T 3oq3_B 134 -------------------------------------------------------------ETYELGTHDKYGIDLYCGI 152 (329)
T ss_dssp -------------------------------------------------------------EEEETTSSTTTCEEEECCC
T ss_pred -------------------------------------------------------------cccceEEeCCCcEEEEecc
Confidence 0001224578888888888
Q ss_pred eccC-CCeEEEEeCCeecCCC-CCeEEEEeCceeEEEEcccccCCCeEEEEEEEeC--CceEE----EEEEEEEEecccC
Q psy2148 1664 DGDP-LPTIKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR--GGKAK----CSANLVVEEKRQG 1735 (1884)
Q Consensus 1664 ~g~p-~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~--~g~~~----~~~~l~V~~~~~~ 1735 (1884)
.|.| .+.++|+|++..+... .++... +..|.|.++..+|+|.|+|.|.|. .|... ..+.|.|...+..
T Consensus 153 ~g~p~~~~i~W~k~~~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~ 228 (329)
T 3oq3_B 153 LYAKHYNNITWYKNNQELIIDGTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH 228 (329)
T ss_dssp CSCCCCCEEEEEETTEECCCSSSSEEEE----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCC
T ss_pred CCCCCCceEEEEECCccCCCCCceEecC----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCC
Confidence 8888 8999999999888533 233222 467999999999999999999997 55433 3477888753210
Q ss_pred CCCCCCCCeEEeccCceEEcCCceEEEEEEEecCC---Cc-EEEEEeCCEec-CCCCCeEEe--ecC--CeEEEEEccCC
Q psy2148 1736 GRGGVVPPSFLTTISSAVINVGQLARFDAKISATK---PL-DVYWLKNGKKI-IPDIRYKTL--EED--NLFTLLIIEAV 1806 (1884)
Q Consensus 1736 ~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p---~p-~v~W~k~~~~l-~~~~~~~~~--~~~--~~~~L~i~~~~ 1806 (1884)
..| +. .+....+..|+.++|.|.+.|.| .| .|.|+|+|..+ ..+.+.... ..+ ....|.|.++.
T Consensus 229 -----~~~-~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 301 (329)
T 3oq3_B 229 -----RFK-LI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301 (329)
T ss_dssp -----CEE-EE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCC
T ss_pred -----CCc-ee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEecc
Confidence 013 33 67778899999999999999998 77 89999999985 333332221 112 34589999999
Q ss_pred CCCCE-EEEEEEEeCCeeEEEEEEEEE
Q psy2148 1807 VEDSG-AYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1807 ~~d~G-~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
.+|+| .|+|.|.|..|....++.|.|
T Consensus 302 ~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 302 EEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp GGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred HHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 99999 999999999999999999887
No 72
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.94 E-value=6.7e-26 Score=273.17 Aligned_cols=263 Identities=19% Similarity=0.203 Sum_probs=192.1
Q ss_pred ccCCCCcEEEEEEEeecC-------CCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCe-EEEEEEEecCc
Q psy2148 718 DLREGENAHFEARLTPTD-------DPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCG-QYSCRAYNDYG 789 (1884)
Q Consensus 718 ~v~~G~~~~l~C~~~~~g-------~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~N~~g 789 (1884)
.+.+|+++.|.|.+.+.. .|.+.++|+|+|..+....+. .. ...|.|.+++.+|+| .|+|.|.|..|
T Consensus 40 ~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~---~~~L~i~~v~~~D~Gs~Y~C~a~n~~g 114 (329)
T 3oq3_B 40 MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VK---NGDLWIANYTSNDSHRRYLCTVTTKNG 114 (329)
T ss_dssp EECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EE---TTEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred EEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--ee---cceEEEcCCChHhCCCcEEEEEEeCCC
Confidence 589999999999988533 277899999999887654443 11 237999999999999 99999999988
Q ss_pred eEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEeecCCCC
Q psy2148 790 EAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKG 869 (1884)
Q Consensus 790 ~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~~~~~~~ 869 (1884)
.......+.|..
T Consensus 115 ~~~~~~~~~v~~-------------------------------------------------------------------- 126 (329)
T 3oq3_B 115 DCVQGIVRSHIR-------------------------------------------------------------------- 126 (329)
T ss_dssp CEEEEEEEEEEC--------------------------------------------------------------------
T ss_pred ceeeEEEEEEEc--------------------------------------------------------------------
Confidence 754443322211
Q ss_pred cccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEEeeCCCC-Cc
Q psy2148 870 MEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDP-SM 948 (1884)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P-~~ 948 (1884)
.+|.+........+.+|+.+.|.|.+. +.| .+
T Consensus 127 ---------------------------------------------~~p~~~~~~~~~~~~~G~~v~L~C~~~--g~p~~~ 159 (329)
T 3oq3_B 127 ---------------------------------------------KPPSCIPETYELGTHDKYGIDLYCGIL--YAKHYN 159 (329)
T ss_dssp ---------------------------------------------CCCSCEEEEEETTSSTTTCEEEECCCC--SCCCCC
T ss_pred ---------------------------------------------CCCcEeccccceEEeCCCcEEEEeccC--CCCCCc
Confidence 112222222223457899999999998 677 89
Q ss_pred EEEEeeCCEEccC-CCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcC--CeeEEE----EEEEEEEeecccccccchh
Q psy2148 949 TVEWFHNGKALSA-GSRIKTINDFGFVILEINDVYLRDSGLYTCKATNK--HGEATT----SCKLTVKGRQGIDVEPQVS 1021 (1884)
Q Consensus 949 ~v~W~~~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~--~G~~~~----~~~l~V~~~~~~~~~p~~~ 1021 (1884)
.|+|+|+|..+.. +.++... ++ .|.|.+++.+|+|.|+|.|.|. .|.... .+.|.|..++...
T Consensus 160 ~i~W~k~~~~l~~~~~~~~~~--~~--~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~------ 229 (329)
T 3oq3_B 160 NITWYKNNQELIIDGTKYSQS--GQ--NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR------ 229 (329)
T ss_dssp EEEEEETTEECCCSSSSEEEE--TT--EEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCC------
T ss_pred eEEEEECCccCCCCCceEecC--CC--EEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCC------
Confidence 9999999999963 4455444 22 7999999999999999999997 654333 3778887543210
Q ss_pred HhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCC---Cc-EEEEEECCEec
Q psy2148 1022 AIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDP---TM-RIDWFFNGRPF 1097 (1884)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p---~~-~v~W~k~~~~l 1097 (1884)
.|.+ ......+.+|+.+.|.|.+. +.| .+ .|.|+|+|..+
T Consensus 230 -------------------------------~~~~---~~~~~~v~~G~~~~l~C~~~--g~p~~~~~i~v~W~~~g~~i 273 (329)
T 3oq3_B 230 -------------------------------FKLI---LDPKINVTIGEPANITCTAV--STSLLVDDVLIDWENPSGWI 273 (329)
T ss_dssp -------------------------------EEEE---CCSEEEECTTSCEEEEEEEE--ETTCCTTCCEEEEECTTSCB
T ss_pred -------------------------------Ccee---cCCeeEEecCCCEEEEEEEE--ECCCCCCCcEEEEEECCeee
Confidence 0111 22236788999999999998 554 66 89999999984
Q ss_pred -cCCCceEEE--eeC--cEEEEEEcccCcCCcE-EEEEEEEcCCeeeEEEEEEEE
Q psy2148 1098 -ATGSRVKTV--YDF--GFISLDMDYVYARDSG-EYICRATNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1098 -~~~~~~~~~--~~~--~~~~l~i~~~~~~d~G-~Y~C~a~n~~G~~~~~~~l~v 1146 (1884)
..+.+.... ..+ ....|.|.++..+|+| .|+|.|.|..|..+.++.|.|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 274 IGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp CCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred eccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 444433222 122 3568999999999999 999999999999999988876
No 73
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=287.44 Aligned_cols=286 Identities=16% Similarity=0.262 Sum_probs=216.9
Q ss_pred CCCCeEEEccCCccccccccceEEEEEEeeC-----CCCCCeEEEeecCeec--CCCCCceeeeeCceEEEEEeeeccCC
Q psy2148 1422 KQPPRFVTQIKTQDQLVEMQSTKFECQLAPV-----GDPNMKVEWFLNGKPL--PHKNRFNPIYDFGYVAMNFGWVYPED 1494 (1884)
Q Consensus 1422 ~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~-----g~p~~~i~W~~~~~~l--~~~~~~~~~~~~~~~~L~i~~~~~~d 1494 (1884)
...|.|...+.+. .+.+|+.+.|.|.+... |.|.+.|.|+|+|..+ ....+..+...++ +|.|.+++.+|
T Consensus 16 ~~~p~~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D 92 (339)
T 3o4o_C 16 RSCRFRGRHYKRE-FRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQED 92 (339)
T ss_dssp --CEEEEECSCCE-EEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTC
T ss_pred hhhHhhCcCceEE-EEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCccc
Confidence 3568888877654 58899999999997311 8889999999999884 3332444445555 79999999999
Q ss_pred CeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCccccc
Q psy2148 1495 SGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKV 1574 (1884)
Q Consensus 1495 ~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v 1574 (1884)
+|.|+|.|.|..|....++.|.|..+|.... + +
T Consensus 93 ~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~-------------------------------------~-~--------- 125 (339)
T 3o4o_C 93 SGTYVCTTRNASYCDKMSIELRVFENTDAFL-------------------------------------P-F--------- 125 (339)
T ss_dssp CEEEECCEEETTEEEEEEEEEEEECSCGGGH-------------------------------------H-H---------
T ss_pred CEEEEEEEECCcceEEEEEEEEEEcCCCccc-------------------------------------c-c---------
Confidence 9999999999999888888888875432100 0 0
Q ss_pred ccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCC
Q psy2148 1575 QEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQ 1654 (1884)
Q Consensus 1575 ~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G 1654 (1884)
......+.+|
T Consensus 126 ----------------------------------------------------------------------~~~~~~~~~g 135 (339)
T 3o4o_C 126 ----------------------------------------------------------------------ISYPQILTLS 135 (339)
T ss_dssp ----------------------------------------------------------------------HCEEEEEETT
T ss_pred ----------------------------------------------------------------------cccceEEECC
Confidence 0001134567
Q ss_pred CeEEEEEE-----EeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCc----eEEEEE
Q psy2148 1655 DQARFEVE-----FDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG----KAKCSA 1725 (1884)
Q Consensus 1655 ~~~~l~C~-----~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g----~~~~~~ 1725 (1884)
+.+.|.|. +.|.|.+.++|+|+|..+..... +.......+.|.|.++..+|+|.|+|.|.|..| .....+
T Consensus 136 ~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~ 214 (339)
T 3o4o_C 136 TSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI 214 (339)
T ss_dssp SCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCS-SEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEE
T ss_pred CCEEEEecCCcccccCCCCceEEEecCCeeCCCCCc-eeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEE
Confidence 77888887 67889999999999998875532 223334446899999999999999999999887 567788
Q ss_pred EEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEE---ecCC-CcEEEEEeCCEecCC---------CCCeEEe
Q psy2148 1726 NLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI---SATK-PLDVYWLKNGKKIIP---------DIRYKTL 1792 (1884)
Q Consensus 1726 ~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~---~g~p-~p~v~W~k~~~~l~~---------~~~~~~~ 1792 (1884)
.|.|...+.. .+|.|...+....+..|+.++|.|.+ .|.| .+.+.|+++|..+.. +.++.+.
T Consensus 215 ~l~V~~~~~~-----~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~ 289 (339)
T 3o4o_C 215 ELRIKKKKEE-----TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYS 289 (339)
T ss_dssp EEEEECCCCC-----CCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECC
T ss_pred EEEEEcCCCC-----CCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEec
Confidence 8998864321 47888877778889999999999999 8999 889999999987642 2233333
Q ss_pred ecCCe---EEEEEccCCCCCC-EEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1793 EEDNL---FTLLIIEAVVEDS-GAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1793 ~~~~~---~~L~i~~~~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
.++.. ..|.|.++..+|. |.|+|.|.|.+|+++..++|.+.
T Consensus 290 ~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 290 ENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp CSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred ccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence 33332 2799999999997 99999999999999888777654
No 74
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.94 E-value=9.9e-27 Score=278.27 Aligned_cols=271 Identities=14% Similarity=0.163 Sum_probs=191.8
Q ss_pred ccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCC-----------------CCCeEEEe-eCCEEEEEEcccCcCCCeE
Q psy2148 718 DLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKT-----------------GSRFRTFC-DFGFVILEISPVYPEDCGQ 779 (1884)
Q Consensus 718 ~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~-----------------~~~~~~~~-~~~~~~L~i~~~~~~d~G~ 779 (1884)
.+.+|++++|.|.+.+ +.|.+.++|+|++..... ..++.+.. ..+..+|.|.+++.+|+|.
T Consensus 10 tv~~G~~v~L~C~v~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~ 88 (308)
T 4fom_A 10 TAVWGKNVSLKCLIEV-NETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGK 88 (308)
T ss_dssp EEETTSCEEECCBCCC-SSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCEE
T ss_pred EEEcCCcEEEEEEecC-CCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCEE
Confidence 5789999999999874 456678999996543211 11222211 1133579999999999999
Q ss_pred EEEEEEec-CceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEeccc
Q psy2148 780 YSCRAYND-YGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKR 858 (1884)
Q Consensus 780 Y~C~a~N~-~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~ 858 (1884)
|+|.|.|. .|..+..+.+.|...|...
T Consensus 89 Y~C~a~n~~~~~~~~~~~~~v~~~~~~~---------------------------------------------------- 116 (308)
T 4fom_A 89 YICKAVTFPLGNAQSSTTVTVLVEPTVS---------------------------------------------------- 116 (308)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEBCCEEE----------------------------------------------------
T ss_pred EEEEEeeCCCcceeeeeEEEeeeccccc----------------------------------------------------
Confidence 99999986 5666666666664433221
Q ss_pred ceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEE
Q psy2148 859 SIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFEC 938 (1884)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C 938 (1884)
+...+.......|+.+.|.|
T Consensus 117 ------------------------------------------------------------~~~~~~~~~~~~~~~~~l~C 136 (308)
T 4fom_A 117 ------------------------------------------------------------LIKGPDSLIDGGNETVAAIC 136 (308)
T ss_dssp ------------------------------------------------------------EEECSSCCCTTCSCEEEEEE
T ss_pred ------------------------------------------------------------cccccceeEEcCCceEEEEE
Confidence 11222334556789999999
Q ss_pred EEeeCCCCCcEEEEeeCCEEccCCCcEEEE-eeCCeEEEEEccCCCCCCeEEEEEEEcCCeeE--EEEEEEEEEeecccc
Q psy2148 939 RLTPTNDPSMTVEWFHNGKALSAGSRIKTI-NDFGFVILEINDVYLRDSGLYTCKATNKHGEA--TTSCKLTVKGRQGID 1015 (1884)
Q Consensus 939 ~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~~~~~~~ 1015 (1884)
.+.. +.|.+.|+|+|++.++......... .......|.|.++..+|+|.|+|.|.|..|.. +.++.|.|..+|.+
T Consensus 137 ~~~~-g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~- 214 (308)
T 4fom_A 137 IAAT-GKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEV- 214 (308)
T ss_dssp EEEE-EBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEE-
T ss_pred EecC-CcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCee-
Confidence 8753 7889999999999888543221100 01123479999999999999999999987764 44555666544432
Q ss_pred cccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECC
Q psy2148 1016 VEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNG 1094 (1884)
Q Consensus 1016 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~ 1094 (1884)
.....+...+.+|+.++|.|.+. |.|.| .|.|+|+|
T Consensus 215 -----------------------------------------~~~~~~~~~~~~g~~v~l~C~~~--g~P~p~~v~W~k~~ 251 (308)
T 4fom_A 215 -----------------------------------------SVTGYDGNWFVGRKGVNLKCNAD--ANPPPFKSVWSRLD 251 (308)
T ss_dssp -----------------------------------------CCBCCCSCEETTCCSCEEECCEE--EESCEEEEECCBSS
T ss_pred -----------------------------------------EEcccceeeeeccccEEEEEEEe--cCCCCcEEEEEECC
Confidence 22222334566789999999997 77777 69999999
Q ss_pred EeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeeccc
Q psy2148 1095 RPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKHD 1151 (1884)
Q Consensus 1095 ~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~ 1151 (1884)
..+..+... . +...|.|.+++.+|+|.|+|.|+|.+|.++.++.|.|..+|-
T Consensus 252 ~~~~~~~~~----~-~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 252 GQWPDGLLA----S-DNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp SCCCSSCBC----S-TTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred eECCCcEEE----c-CCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 988765321 2 234677899999999999999999999999999999987653
No 75
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.94 E-value=6.5e-27 Score=284.29 Aligned_cols=284 Identities=20% Similarity=0.305 Sum_probs=211.6
Q ss_pred CCCeeeecCCCccccCCCCcEEEEEEEeec-----CCCCCeEEEeeCCcc--CCCCCCeEEEeeCCEEEEEEcccCcCCC
Q psy2148 705 QAPVFTVPLSNIDDLREGENAHFEARLTPT-----DDPKLKVEWFWNGKP--MKTGSRFRTFCDFGFVILEISPVYPEDC 777 (1884)
Q Consensus 705 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~-----g~p~~~v~W~k~g~~--l~~~~~~~~~~~~~~~~L~i~~~~~~d~ 777 (1884)
..|.|...+.+. .+.+|+++.|.|.+.+. +.|.+.++|+|+|.. +......++...++ .|.|.+++.+|+
T Consensus 17 ~~p~~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~ 93 (339)
T 3o4o_C 17 SCRFRGRHYKRE-FRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDS 93 (339)
T ss_dssp -CEEEEECSCCE-EEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTCC
T ss_pred hhHhhCcCceEE-EEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCcccC
Confidence 567777766554 78999999999998621 578889999999987 44332444444433 799999999999
Q ss_pred eEEEEEEEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecc
Q psy2148 778 GQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGK 857 (1884)
Q Consensus 778 G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~ 857 (1884)
|.|+|.|.|..|....++.|.|...+...
T Consensus 94 G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~--------------------------------------------------- 122 (339)
T 3o4o_C 94 GTYVCTTRNASYCDKMSIELRVFENTDAF--------------------------------------------------- 122 (339)
T ss_dssp EEEECCEEETTEEEEEEEEEEEECSCGGG---------------------------------------------------
T ss_pred EEEEEEEECCcceEEEEEEEEEEcCCCcc---------------------------------------------------
Confidence 99999999999988888888775433210
Q ss_pred cceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEE
Q psy2148 858 RSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFE 937 (1884)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~ 937 (1884)
++ .......+.+|+.+.|.
T Consensus 123 ----------------------------------------------------------~~---~~~~~~~~~~g~~v~l~ 141 (339)
T 3o4o_C 123 ----------------------------------------------------------LP---FISYPQILTLSTSGVLV 141 (339)
T ss_dssp ----------------------------------------------------------HH---HHCEEEEEETTSCEEEE
T ss_pred ----------------------------------------------------------cc---ccccceEEECCCCEEEE
Confidence 00 00112367789999999
Q ss_pred EE-----EeeCCCCCcEEEEeeCCEEccCC-CcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCe----eEEEEEEEE
Q psy2148 938 CR-----LTPTNDPSMTVEWFHNGKALSAG-SRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHG----EATTSCKLT 1007 (1884)
Q Consensus 938 C~-----v~~~~~P~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G----~~~~~~~l~ 1007 (1884)
|. +. +.|.+.|+|+|+|..+... .++.+....+ .|.|.+++.+|+|.|+|.|.|..| ..+..+.|.
T Consensus 142 C~~~~~~~~--g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~ 217 (339)
T 3o4o_C 142 CPDLSEFTR--DKTDVKIQWYKDSLLLDKDNEKFLSVRGTT--HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELR 217 (339)
T ss_dssp CCSCTTTCC--SSSCCCBCCEESSCBCCTTCSSEEECTTSS--EEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEE
T ss_pred ecCCccccc--CCCCceEEEecCCeeCCCCCceeEEcCCcc--eEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEE
Confidence 99 55 7788899999999999766 5555544333 799999999999999999999988 567788888
Q ss_pred EEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEE---eeCCCC
Q psy2148 1008 VKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRL---EPKSDP 1084 (1884)
Q Consensus 1008 V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v---~~~~~p 1084 (1884)
|...+. ..+|.+... ...+.+.+|+.+.|.|.+ . |.|
T Consensus 218 V~~~~~-------------------------------------~~~P~i~~~-~~~~~v~~G~~v~L~C~~~~~~--g~P 257 (339)
T 3o4o_C 218 IKKKKE-------------------------------------ETIPVIISP-LKTISASLGSRLTIPCKVFLGT--GTP 257 (339)
T ss_dssp EECCCC-------------------------------------CCCCEECCC-SCCCCCCCCSCCCCCCCEEESS--SCC
T ss_pred EEcCCC-------------------------------------CCCCEEecC-CceeEeccCCCEEEEEEEECCC--CCC
Confidence 875321 135555555 334788899999999999 5 777
Q ss_pred -CcEEEEEECCEeccCC---------CceEEEeeCc---EEEEEEcccCcCCc-EEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1085 -TMRIDWFFNGRPFATG---------SRVKTVYDFG---FISLDMDYVYARDS-GEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1085 -~~~v~W~k~~~~l~~~---------~~~~~~~~~~---~~~l~i~~~~~~d~-G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
.+.+.|+++|..+... .++....++. ...|.|.++..+|+ |.|+|.|.|.+|.++..+.+.+.
T Consensus 258 ~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 258 LTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp SSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred CCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence 8899999999876532 2222222222 23699999999998 99999999999999887776543
No 76
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.93 E-value=3.3e-25 Score=268.39 Aligned_cols=278 Identities=17% Similarity=0.185 Sum_probs=196.6
Q ss_pred CCCeeeecCCCccccCCCCcEEEEEEEeec--CCCCCeEEEeeCCcc-----------------CCCCCCeEEEe-eCCE
Q psy2148 705 QAPVFTVPLSNIDDLREGENAHFEARLTPT--DDPKLKVEWFWNGKP-----------------MKTGSRFRTFC-DFGF 764 (1884)
Q Consensus 705 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~--g~p~~~v~W~k~g~~-----------------l~~~~~~~~~~-~~~~ 764 (1884)
.+|.+.+..+....+.+|++++|.|.+.+. +.|.+.++|+|++.. .....++.+.. ..+.
T Consensus 12 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 91 (331)
T 3u83_A 12 RDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD 91 (331)
T ss_dssp ---------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSB
T ss_pred CCCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCC
Confidence 445555555555678999999999998742 114568999996521 12234544431 2234
Q ss_pred EEEEEcccCcCCCeEEEEE-EEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccc
Q psy2148 765 VILEISPVYPEDCGQYSCR-AYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDY 843 (1884)
Q Consensus 765 ~~L~i~~~~~~d~G~Y~C~-a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~ 843 (1884)
..|.|.+++.+|+|.|+|. +.|..|.....+.|.|..+|.+.+
T Consensus 92 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~------------------------------------ 135 (331)
T 3u83_A 92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWI------------------------------------ 135 (331)
T ss_dssp CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEE------------------------------------
T ss_pred ceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCccee------------------------------------
Confidence 5799999999999999998 666678778888887765544321
Q ss_pred cceeEEEEEEEecccceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecC
Q psy2148 844 GEAVTSASMKVQGKRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTP 923 (1884)
Q Consensus 844 g~~~~s~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 923 (1884)
....
T Consensus 136 ----------------------------------------------------------------------------~~~~ 139 (331)
T 3u83_A 136 ----------------------------------------------------------------------------EGTQ 139 (331)
T ss_dssp ----------------------------------------------------------------------------EECS
T ss_pred ----------------------------------------------------------------------------ecCC
Confidence 1123
Q ss_pred CceeecCC---CeEEEEEE-EeeCCCCCcEEEEeeCCEEcc-------CCCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 924 TDLTLAES---TLAHFECR-LTPTNDPSMTVEWFHNGKALS-------AGSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 924 ~~~~v~~G---~~v~l~C~-v~~~~~P~~~v~W~~~g~~i~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
..+.+.+| +.+.|.|. +. +.|.+.|+|+|++.... .+..+.+ ...|.|.++..+|+|.|+|.
T Consensus 140 ~~~~~~~g~~~~~~~l~C~~~~--~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~ 212 (331)
T 3u83_A 140 AVLRAKKGQDDKVLVATCTSAN--GKPPSVVSWETRLKGEAEYQEIRNPNGTVTV-----ISRYRLVPSREAHQQSLACI 212 (331)
T ss_dssp SCEEECTTCCCCEEEEEEEEEE--EBSCCEEEEEESSCCEEEEEEEECTTSCEEE-----EEEEEECCCGGGTTCEEEEE
T ss_pred CceeecCCCccceEEEEEEecC--CcCCceEEEEcCCCCccccceeECCCCcEEE-----EEEEEEEeccccCCCEEEEE
Confidence 44567777 78999998 65 67889999999532211 1122222 13699999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 993 ATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|.|..|..+..+.|.|..+|.+ .........+.+|+.+
T Consensus 213 a~n~~~~~~~~~~l~V~~~P~~------------------------------------------~~~~~~~~~~~~g~~~ 250 (331)
T 3u83_A 213 VNYHMDRFKESLTLNVQYEPEV------------------------------------------TIEGFDGNWYLQRMDV 250 (331)
T ss_dssp EEETTEEEEEEEECCEEEEEEE------------------------------------------EEECCCSCCBTTCCCE
T ss_pred EecCCCcceeeEEEEEecCCeE------------------------------------------EEecCCCceEeCCCeE
Confidence 9999999999999999855432 2222233567899999
Q ss_pred EEEEEEeeCCCCCcE-EEEEECCEeccCCCceEEEeeCcEEEEEEc-ccCcCCcEEEEEEEEcCCeeeEEEEEEEEeecc
Q psy2148 1073 HFDCRLEPKSDPTMR-IDWFFNGRPFATGSRVKTVYDFGFISLDMD-YVYARDSGEYICRATNKWGTAMTKAKVICKAKH 1150 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~-v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~ 1150 (1884)
.|.|.+. +.|.+. |.|++++..+..+.. ..++ .|.|. ++..+|+|.|+|.|.|.+|..+.++.|.|...+
T Consensus 251 ~l~C~~~--g~p~p~~i~W~~~~~~~~~~~~----~~~~--~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 322 (331)
T 3u83_A 251 KLTCKAD--ANPPATEYHWTTLNGSLPKGVE----AQNR--TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA 322 (331)
T ss_dssp EEEEEEE--EESCCCEEEEEETTBSCCTTEE----EETT--EEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred EEEEeCc--CCCCCCEEEEEECCCcccccce----ecCc--EEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccc
Confidence 9999997 778887 999999999876522 1223 69999 899999999999999999999999999988655
Q ss_pred c
Q psy2148 1151 D 1151 (1884)
Q Consensus 1151 ~ 1151 (1884)
.
T Consensus 323 ~ 323 (331)
T 3u83_A 323 A 323 (331)
T ss_dssp -
T ss_pred h
Confidence 4
No 77
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.93 E-value=2.9e-24 Score=256.55 Aligned_cols=278 Identities=21% Similarity=0.305 Sum_probs=203.0
Q ss_pred CCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCC-CCeEEEe-eCCEEEEEEcccCcCCCeEEEE
Q psy2148 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTG-SRFRTFC-DFGFVILEISPVYPEDCGQYSC 782 (1884)
Q Consensus 705 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C 782 (1884)
.+|.|...+.+. .+.+|++++|.|.+. |.|.+.++|+|+|..+... .++.+.. +++...|.|.+++.+|+|.|+|
T Consensus 3 ~~P~~~~~p~~~-~v~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 79 (305)
T 2nzi_A 3 MAPHFKEELRNL-NVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 79 (305)
T ss_dssp CCCEEEECCCCE-EECTTCCEEEEEEEE--CSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEE
T ss_pred CCCeeeecccce-EEeCCCcEEEEEEEe--CCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEE
Confidence 467787776654 789999999999997 6888999999999988754 4566543 4566799999999999999999
Q ss_pred EEEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEE
Q psy2148 783 RAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIIL 862 (1884)
Q Consensus 783 ~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~ 862 (1884)
.|.|..|..+.++.|.|..+|.+.
T Consensus 80 ~a~n~~g~~~~~~~l~V~~~p~~~-------------------------------------------------------- 103 (305)
T 2nzi_A 80 RATNQGGSVSGTASLEVEVPAKIH-------------------------------------------------------- 103 (305)
T ss_dssp EEEETTEEEEEEEEEEECEEEEEC--------------------------------------------------------
T ss_pred EEEcCCCCccceEEEEEecCCccC--------------------------------------------------------
Confidence 999999998888888886544321
Q ss_pred eecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEEee
Q psy2148 863 ESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTP 942 (1884)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~ 942 (1884)
.|.+...+.+..+.+|+.+.|.|.+.
T Consensus 104 -----------------------------------------------------~~~~~~~~~~~~~~~g~~~~l~C~~~- 129 (305)
T 2nzi_A 104 -----------------------------------------------------LPKTLEGMGAVHALRGEVVSIKIPFS- 129 (305)
T ss_dssp -----------------------------------------------------CCHHHHSSCCEEEETTCCEEEEEEEE-
T ss_pred -----------------------------------------------------CCccccccccEEecCCCEEEEEEEEC-
Confidence 12222334567788999999999998
Q ss_pred CCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEcc-CCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchh
Q psy2148 943 TNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEIND-VYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVS 1021 (1884)
Q Consensus 943 ~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~-~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~ 1021 (1884)
+.|.+.|+|+++|..+..+.++.+...+....|.|.+ +..+|+|.|+|.|.|..|..+..+.|.|.+.|..+..+...
T Consensus 130 -g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~ 208 (305)
T 2nzi_A 130 -GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVS 208 (305)
T ss_dssp -EESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEE
T ss_pred -CCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceee
Confidence 6788899999999999988888887766777899999 99999999999999999999999999998765432211100
Q ss_pred HhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCC
Q psy2148 1022 AIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGS 1101 (1884)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~ 1101 (1884)
. ..+..+...... ....|+...+.|.+. ..+.+...|++.+...
T Consensus 209 ~----------------------------~~~~~v~l~w~~--p~~~g~~~i~~y~v~--~~~~~~~~w~~~~~~~---- 252 (305)
T 2nzi_A 209 D----------------------------VSRDSVNLTWTE--PASDGGSKITNYIVE--KCATTAERWLRVGQAR---- 252 (305)
T ss_dssp S----------------------------CCSSCEEEEEEC--CSCCSBSCEEEEEEE--EEETTSCCEEEEEEES----
T ss_pred e----------------------------ccCCEEEEEEcC--CccCCCCceeEEEEE--EecCCCCccEECcccc----
Confidence 0 000000000000 011234444555554 2233344565443332
Q ss_pred ceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEE
Q psy2148 1102 RVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK 1141 (1884)
Q Consensus 1102 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~ 1141 (1884)
...|.|.++...+.|.|+|.|.|..|....+
T Consensus 253 ---------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S 283 (305)
T 2nzi_A 253 ---------ETRYTVINLFGKTSYQFRVIAENKFGLSKPS 283 (305)
T ss_dssp ---------SSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred ---------CceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence 2368999999999999999999999977544
No 78
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.93 E-value=1.1e-23 Score=268.83 Aligned_cols=440 Identities=13% Similarity=0.107 Sum_probs=240.3
Q ss_pred ecceeeeecCCcEEEEEEEeecCCCc--ceEEEeccc--ccccccccccce-EEEee-ccceeeeeeeeeeeeceEEEEE
Q psy2148 1270 EIESVTVQEAEPVRFETRVEPRVDPR--LRVECSLST--AFFFPFINISTA-FLIFN-FCLHAVIFSHPIFDLGFVSLDI 1343 (1884)
Q Consensus 1270 ~~~~~~v~~g~~v~l~c~v~~~~~p~--~~~~W~~~~--~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~L~I 1343 (1884)
.+..+.+.+|+.++|.|.+.+..... ..+.|++.. .........+.. ..... ....|...... ...+..+|.|
T Consensus 6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I 84 (512)
T 1zvo_C 6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVD-TSRNQFSLNL 84 (512)
T ss_pred CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEec-CCCCEEEEEE
Confidence 35678999999999999998532222 689999863 211100000000 00000 00112111110 1234678999
Q ss_pred eeecccCceEEEEEEEcccc-----------c--eeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhccccccc
Q psy2148 1344 DYVYPEDQGEYVCRAYNDHG-----------E--AFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIY 1410 (1884)
Q Consensus 1344 ~~~~~~d~G~Y~C~a~n~~g-----------~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1410 (1884)
.+++.+|+|.|.|.+.+..| . ....+.|.|...+.
T Consensus 85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~-------------------------------- 132 (512)
T 1zvo_C 85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPT-------------------------------- 132 (512)
T ss_pred CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCC--------------------------------
Confidence 99999999999999997642 1 11235666653211
Q ss_pred ccCCccCCcccCCCCeEEE-ccCCccccccccceEEEEEEeeCCCCCC-eEEEeecCeecCCCCCceeeeeCc----eEE
Q psy2148 1411 LTEDDLYEPEKKQPPRFVT-QIKTQDQLVEMQSTKFECQLAPVGDPNM-KVEWFLNGKPLPHKNRFNPIYDFG----YVA 1484 (1884)
Q Consensus 1411 ~~~~~~~~~~~~~pP~~~~-~~~~~~~v~~g~~~~l~C~~~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~----~~~ 1484 (1884)
.+|.+.. .+.....+ .|+.++|.|.+. ++.|.| .|+|++++..............++ ...
T Consensus 133 ------------~~P~i~~~~~~~~~~~-~~~~v~L~C~~~-g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~ 198 (512)
T 1zvo_C 133 ------------KAPDVFPIISGCRHPK-DNSPVVLACLIT-GYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQ 198 (512)
T ss_pred ------------cCCeEEeccCCccccc-CCCeEEEEEEEE-eeecCceEEEEEcCcccCceEecCceecCCCCEEEEEE
Confidence 2344331 11111012 468999999997 334765 899999764321000001111122 235
Q ss_pred EEEeeeccCCCeEEEEEEEecCcceEEEEE-----------EEEeCCCccccccCCCccchhHHHHHHhhcccccCCccc
Q psy2148 1485 MNFGWVYPEDSGEYLCRATNLYGMDETRAI-----------LKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQL 1553 (1884)
Q Consensus 1485 L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~-----------l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1553 (1884)
|.|.....+ .|.|+|.|.|..|.....+. |.|..+|.... .+.
T Consensus 199 L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~------------~~~------------- 252 (512)
T 1zvo_C 199 LSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEG------------SLA------------- 252 (512)
T ss_pred EEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchhc------------ccc-------------
Confidence 888877776 99999999999886554431 12211111000 000
Q ss_pred cccCCCCCCCeEecCCcccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecC
Q psy2148 1554 VEDEKPKEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDAS 1633 (1884)
Q Consensus 1554 ~~~~~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1633 (1884)
.+...|. . ...|. + ....+.|.++|.. .. +.+.. +...
T Consensus 253 ----~~~~~~~------~--~~~g~---~-------~~~~~~~~~~~~~----------h~------~~~~~----~~~~ 290 (512)
T 1zvo_C 253 ----KATTAPA------T--TRNTG---R-------GGEEKKKEKEKEE----------QE------ERETK----TPEC 290 (512)
T ss_pred ----ccccCch------h--hccCc---c-------cccceeccCCccc----------cc------ccCcc----cccC
Confidence 0000000 0 11120 0 0002344444410 00 00000 0000
Q ss_pred CCCCCCCe-eeecCCceeecCCCeEEEEEEEeccCC--CeEEEEeCCeecCCCCCeE-EEEeC-----ceeEEEEccccc
Q psy2148 1634 EKPAKPPV-FTKKIQPCRAFEQDQARFEVEFDGDPL--PTIKWFREDFPITSSPDFQ-IHTFS-----TKSILIMRQVFM 1704 (1884)
Q Consensus 1634 ~~~~~~p~-~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~~-~~~~~-----~~~~L~i~~v~~ 1704 (1884)
.....+|. ++..+....+.+|+.+.|.|.+.|.++ ..|+|+|+|..+....... ..... ..+.|.|..+..
T Consensus 291 ~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~ 370 (512)
T 1zvo_C 291 PSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLW 370 (512)
T ss_pred CCCCCCCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHh
Confidence 11223344 344555556779999999999998643 4999999998765211101 11111 124699999999
Q ss_pred CCCeEEEEEEEeCCceEEEEEEEEEE-ecccCCCCCCCCCeEEeccCceEEcCCceEE-EEEEEecC-CC-cEEEEEeCC
Q psy2148 1705 EDSGVFAVIAENRGGKAKCSANLVVE-EKRQGGRGGVVPPSFLTTISSAVINVGQLAR-FDAKISAT-KP-LDVYWLKNG 1780 (1884)
Q Consensus 1705 ~DsG~Y~C~a~n~~g~~~~~~~l~V~-~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~-l~C~~~g~-p~-p~v~W~k~~ 1780 (1884)
+|.|.|+|.|.|..+... ...+... +.. ...+|.+...+... .|+.+. |.|.+.|. |. ..|+|+|||
T Consensus 371 ~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~-----~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g 441 (512)
T 1zvo_C 371 NAGTSVTCTLNHPSLPPQ-RLMALREPAAQ-----APVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQ 441 (512)
T ss_pred cCCCeEEEEEEeCCCCCC-ceeEEeecCCC-----CCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECC
Confidence 999999999999977653 3333221 100 01367766544333 799999 99999995 43 368999999
Q ss_pred EecCCCCCe--EE--eecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEE--EEEEEEEE
Q psy2148 1781 KKIIPDIRY--KT--LEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEAR--CEAELVVQ 1833 (1884)
Q Consensus 1781 ~~l~~~~~~--~~--~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~--~~~~l~V~ 1833 (1884)
..+...... .. ..++. ...|.|.....+|.|.|+|.|.|...... ....|.|.
T Consensus 442 ~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~ 504 (512)
T 1zvo_C 442 REVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVS 504 (512)
T ss_pred eECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEec
Confidence 998654311 11 12222 13577777777789999999999976543 44444443
No 79
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.93 E-value=1.6e-25 Score=271.26 Aligned_cols=274 Identities=18% Similarity=0.198 Sum_probs=192.7
Q ss_pred CCCeEEEccCCccccccccceEEEEEEeeCCC----CCCeEEEeecCe---------------ec--CCCCCceee-eeC
Q psy2148 1423 QPPRFVTQIKTQDQLVEMQSTKFECQLAPVGD----PNMKVEWFLNGK---------------PL--PHKNRFNPI-YDF 1480 (1884)
Q Consensus 1423 ~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~----p~~~i~W~~~~~---------------~l--~~~~~~~~~-~~~ 1480 (1884)
.+|.+.........+.+|+.++|.|.+. +. |.+.|.|+|++. .+ ...+++.+. ...
T Consensus 12 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~--~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~ 89 (331)
T 3u83_A 12 RDPSQVVQVNDSMYGFIGTDVVLHCSFA--NPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSF 89 (331)
T ss_dssp ---------CEEEEEETTCCEEECCBCS--SCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSS
T ss_pred CCCcceEEcCCcEEEEecCCEEEeeecC--CCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCC
Confidence 3454444444556789999999999985 55 456799999651 11 122333322 123
Q ss_pred ceEEEEEeeeccCCCeEEEEE-EEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCC
Q psy2148 1481 GYVAMNFGWVYPEDSGEYLCR-ATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKP 1559 (1884)
Q Consensus 1481 ~~~~L~i~~~~~~d~G~Y~c~-a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1559 (1884)
+..+|.|.+++.+|+|.|+|. +.|..|.....+.|.|..+|...
T Consensus 90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~----------------------------------- 134 (331)
T 3u83_A 90 TDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW----------------------------------- 134 (331)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEE-----------------------------------
T ss_pred CCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcce-----------------------------------
Confidence 445799999999999999998 66777887788888886543210
Q ss_pred CCCCeEecCCcccccccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCC
Q psy2148 1560 KEAPVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKP 1639 (1884)
Q Consensus 1560 ~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1639 (1884)
+...
T Consensus 135 -----~~~~----------------------------------------------------------------------- 138 (331)
T 3u83_A 135 -----IEGT----------------------------------------------------------------------- 138 (331)
T ss_dssp -----EEEC-----------------------------------------------------------------------
T ss_pred -----eecC-----------------------------------------------------------------------
Confidence 0001
Q ss_pred CeeeecCCceeecCC---CeEEEEEE-EeccCCCeEEEEeCCe--ec-----CCCCCeEEEEeCceeEEEEcccccCCCe
Q psy2148 1640 PVFTKKIQPCRAFEQ---DQARFEVE-FDGDPLPTIKWFREDF--PI-----TSSPDFQIHTFSTKSILIMRQVFMEDSG 1708 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G---~~~~l~C~-~~g~p~~~i~W~~~~~--~~-----~~~~~~~~~~~~~~~~L~i~~v~~~DsG 1708 (1884)
.....+.+| +.+.|.|. +.|.|.+.++|++++. .. .....+.+ ...|.|.++..+|+|
T Consensus 139 ------~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G 207 (331)
T 3u83_A 139 ------QAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV-----ISRYRLVPSREAHQQ 207 (331)
T ss_dssp ------SSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEE-----EEEEEECCCGGGTTC
T ss_pred ------CCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEE-----EEEEEEEeccccCCC
Confidence 112334455 66777776 6777888888887532 11 01111111 245999999999999
Q ss_pred EEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEe-ccCceEEcCCceEEEEEEEecCCCcE-EEEEeCCEecCCC
Q psy2148 1709 VFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISATKPLD-VYWLKNGKKIIPD 1786 (1884)
Q Consensus 1709 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~-~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~k~~~~l~~~ 1786 (1884)
.|+|.|.|..|.....+.|.|.. +|.+.. .+....+.+|+.++|.|.+.|.|.|. |.|+|++..+...
T Consensus 208 ~Y~C~a~n~~~~~~~~~~l~V~~----------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~ 277 (331)
T 3u83_A 208 SLACIVNYHMDRFKESLTLNVQY----------EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG 277 (331)
T ss_dssp EEEEEEEETTEEEEEEEECCEEE----------EEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT
T ss_pred EEEEEEecCCCcceeeEEEEEec----------CCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc
Confidence 99999999999999999999984 566663 34455688999999999999999998 9999999988654
Q ss_pred CCeEEeecCCeEEEEEc-cCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecC
Q psy2148 1787 IRYKTLEEDNLFTLLII-EAVVEDSGAYECVAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1787 ~~~~~~~~~~~~~L~i~-~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
.+ + .++ .|.|. ++..+|+|.|+|.|.|..|..+.++.|.|.+.+
T Consensus 278 ~~--~-~~~---~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 322 (331)
T 3u83_A 278 VE--A-QNR---TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA 322 (331)
T ss_dssp EE--E-ETT---EEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred ce--e-cCc---EEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccc
Confidence 22 2 222 79999 999999999999999999999999999998754
No 80
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.93 E-value=8.8e-26 Score=269.99 Aligned_cols=274 Identities=15% Similarity=0.150 Sum_probs=193.8
Q ss_pred CcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccC-----------------CCceEEE-eeCcEEEEEEcccCcCCc
Q psy2148 1063 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFAT-----------------GSRVKTV-YDFGFISLDMDYVYARDS 1124 (1884)
Q Consensus 1063 ~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~-----------------~~~~~~~-~~~~~~~l~i~~~~~~d~ 1124 (1884)
.+++.+|++++|.|.+.+ +.|.+.|.|+|++..... ..++... ...+..+|.|.+++.+|+
T Consensus 8 ~vtv~~G~~v~L~C~v~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 86 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEV-NETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS 86 (308)
T ss_dssp SCEEETTSCEEECCBCCC-SSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred EeEEEcCCcEEEEEEecC-CCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence 367789999999999862 456677999996533211 0111111 112235799999999999
Q ss_pred EEEEEEEEcC-CeeeEEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhccccccc
Q psy2148 1125 GEYICRATNK-WGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSA 1203 (1884)
Q Consensus 1125 G~Y~C~a~n~-~G~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1203 (1884)
|.|+|.|.|. .|..+..+.+.+...+.+.
T Consensus 87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~-------------------------------------------------- 116 (308)
T 4fom_A 87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVS-------------------------------------------------- 116 (308)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEBCCEEE--------------------------------------------------
T ss_pred EEEEEEEeeCCCcceeeeeEEEeeeccccc--------------------------------------------------
Confidence 9999999886 6777777777776443221
Q ss_pred ccccchhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEE
Q psy2148 1204 WYDSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVR 1283 (1884)
Q Consensus 1204 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 1283 (1884)
+...+.......|+.+.
T Consensus 117 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 133 (308)
T 4fom_A 117 ---------------------------------------------------------------LIKGPDSLIDGGNETVA 133 (308)
T ss_dssp ---------------------------------------------------------------EEECSSCCCTTCSCEEE
T ss_pred ---------------------------------------------------------------cccccceeEEcCCceEE
Confidence 11112333455788999
Q ss_pred EEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEcccc
Q psy2148 1284 FETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHG 1363 (1884)
Q Consensus 1284 l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 1363 (1884)
|.|.+.+ +.|.+.+.|++++..+...... ...........|.|..++.+|.|.|+|.|.|..|
T Consensus 134 l~C~~~~-g~P~~~i~W~~~~~~~~~~~~~----------------~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~ 196 (308)
T 4fom_A 134 AICIAAT-GKPVAHIDWEGDLGEMESTTTS----------------FPNETATIISQYKLFPTRFARGRRITCVVKHPAL 196 (308)
T ss_dssp EEEEEEE-EBSCCEEEECCCSSBCCEEEEE----------------CTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred EEEEecC-CcCCceEEEEECCcccccccce----------------eeeecccccccceEEeeeecCCccEEEEEEccCC
Confidence 9998754 5688999999999876543110 0011122345799999999999999999999887
Q ss_pred ceeee--EEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEEccCCcccccccc
Q psy2148 1364 EAFTK--ATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQ 1441 (1884)
Q Consensus 1364 ~~~~~--~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~v~~g~ 1441 (1884)
..... +.|.|..+|. +...+.+...+.+|+
T Consensus 197 ~~~~~~~~~l~V~~~P~------------------------------------------------~~~~~~~~~~~~~g~ 228 (308)
T 4fom_A 197 EKDIRYSFILDIQYAPE------------------------------------------------VSVTGYDGNWFVGRK 228 (308)
T ss_dssp SSCEEEEEECCCCEEEE------------------------------------------------ECCBCCCSCEETTCC
T ss_pred CCceEEeEEEEEecCCe------------------------------------------------eEEcccceeeeeccc
Confidence 65444 4444544443 333333344567889
Q ss_pred ceEEEEEEeeCCCCCC-eEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEEEecCcceEEEEEEEEeCC
Q psy2148 1442 STKFECQLAPVGDPNM-KVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRAILKTTGK 1520 (1884)
Q Consensus 1442 ~~~l~C~~~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~ 1520 (1884)
.++|.|.+. |.|.| .+.|+|++..+..+. .. .+...|.|.+++.+|+|.|+|.|+|.+|..++++.|.|.++
T Consensus 229 ~v~l~C~~~--g~P~p~~v~W~k~~~~~~~~~----~~-~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~ 301 (308)
T 4fom_A 229 GVNLKCNAD--ANPPPFKSVWSRLDGQWPDGL----LA-SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDP 301 (308)
T ss_dssp SCEEECCEE--EESCEEEEECCBSSSCCCSSC----BC-STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECC
T ss_pred cEEEEEEEe--cCCCCcEEEEEECCeECCCcE----EE-cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcC
Confidence 999999997 99988 699999998886542 12 23346778999999999999999999999999999999988
Q ss_pred Cc
Q psy2148 1521 PG 1522 (1884)
Q Consensus 1521 p~ 1522 (1884)
|.
T Consensus 302 P~ 303 (308)
T 4fom_A 302 PH 303 (308)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 81
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.93 E-value=6e-25 Score=256.01 Aligned_cols=242 Identities=18% Similarity=0.245 Sum_probs=177.9
Q ss_pred CCeEEEccCCccccccccceEEEEEEeeCCCCCC-eEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEE
Q psy2148 1424 PPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNM-KVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRA 1502 (1884)
Q Consensus 1424 pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a 1502 (1884)
+|.|...+.+. .+.+|+.+.|.|.+. |.|.+ .++|+|+|..+... ...|.|.+++.+|+|.|+|.|
T Consensus 1 kP~i~~~p~~~-~v~~G~~v~l~C~~~--~~~~~~~~~W~~~g~~~~~~----------~~~l~i~~~~~~d~G~Y~C~~ 67 (262)
T 3rjd_A 1 KAVITLQPPWV-SVFQEETVTLHCEVL--HLPGSSSTQWFLNGTATQTS----------TPSYRITSASVNDSGEYRCQR 67 (262)
T ss_dssp CCEEEESSCCS-EEETTCCEEEEEECS--SCCCTTCEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEE
T ss_pred CCeEecCCCcE-EeeCCCeEEEEEECC--CCCCCceEEEEECCEEeecc----------CCeEEEecCCcccCeEEEEEE
Confidence 36777766653 488999999999986 88887 99999999988643 126899999999999999999
Q ss_pred EecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEE
Q psy2148 1503 TNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARF 1582 (1884)
Q Consensus 1503 ~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l 1582 (1884)
.|..+.. .+.|.|..++ +...+....+.+|+.+.|
T Consensus 68 ~~~~~s~--~~~l~v~~~~-------------------------------------------~~~~~~~~~~~~g~~v~l 102 (262)
T 3rjd_A 68 GLSGRSD--PIQLEIHRGW-------------------------------------------LLLQVSSRVFTEGEPLAL 102 (262)
T ss_dssp SSSCCCC--CEEEEEECSS-------------------------------------------EEEEESCSEEETTSCEEE
T ss_pred ecCCccc--cEEEEEeccc-------------------------------------------eEecCCCeEEecCCeEEE
Confidence 9876543 4556664321 112222334455555555
Q ss_pred EEEE-ecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEE
Q psy2148 1583 CTRV-TGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEV 1661 (1884)
Q Consensus 1583 ~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C 1661 (1884)
.|.+ .+.|.+.+.|+++|..+
T Consensus 103 ~C~~~~~~p~~~v~W~~~g~~~---------------------------------------------------------- 124 (262)
T 3rjd_A 103 RCHAWKDKLVYNVLYYRNGKAF---------------------------------------------------------- 124 (262)
T ss_dssp EEEEGGGCCCEEEEEEETTEEE----------------------------------------------------------
T ss_pred EEEccCCCCCceEEEEECCccc----------------------------------------------------------
Confidence 5555 44444555555554432
Q ss_pred EEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCC
Q psy2148 1662 EFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVV 1741 (1884)
Q Consensus 1662 ~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~ 1741 (1884)
.. ......|.|.++..+|+|.|+|.|.|..+.....+.|.|.+.. .
T Consensus 125 -------------------~~--------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~-------~ 170 (262)
T 3rjd_A 125 -------------------KF--------FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF-------P 170 (262)
T ss_dssp -------------------EE--------EEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS-------C
T ss_pred -------------------cc--------cCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCC-------C
Confidence 11 1123459999999999999999999999888888999998632 3
Q ss_pred CCeEEeccCceEEcCCceEEEEEEEecCCC-cE----EEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEE
Q psy2148 1742 PPSFLTTISSAVINVGQLARFDAKISATKP-LD----VYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECV 1816 (1884)
Q Consensus 1742 ~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~----v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 1816 (1884)
+|.+...+ ...+.+|+.++|.|.+.|.|. |. +.|++++..+... .....|.|.++..+|+|.|+|.
T Consensus 171 ~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~ 241 (262)
T 3rjd_A 171 APVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR--------NTSSEYQILTARREDSGLYWCE 241 (262)
T ss_dssp CCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE--------ESCCEEEESSCCGGGCEEEEEE
T ss_pred CCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc--------CCCceEEEEEechhhCeEEEEE
Confidence 56666655 667889999999999999886 54 7899999877421 2233899999999999999999
Q ss_pred EEeCCeeE
Q psy2148 1817 AMNNAGEA 1824 (1884)
Q Consensus 1817 a~N~~G~~ 1824 (1884)
|.|..|..
T Consensus 242 a~n~~G~~ 249 (262)
T 3rjd_A 242 AATEDGNV 249 (262)
T ss_dssp EEETTSSC
T ss_pred EEcccCce
Confidence 99999975
No 82
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.93 E-value=5.7e-25 Score=256.24 Aligned_cols=242 Identities=18% Similarity=0.285 Sum_probs=183.4
Q ss_pred CeeeecCCCccccCCCCcEEEEEEEeecCCCCC-eEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEEEE
Q psy2148 707 PVFTVPLSNIDDLREGENAHFEARLTPTDDPKL-KVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAY 785 (1884)
Q Consensus 707 p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 785 (1884)
|.|...+... .+.+|+.+.|.|.+. +.|.+ .++|+|+|..+.... ..|.|.+++.+|+|.|+|.|.
T Consensus 2 P~i~~~p~~~-~v~~G~~v~l~C~~~--~~~~~~~~~W~~~g~~~~~~~----------~~l~i~~~~~~d~G~Y~C~~~ 68 (262)
T 3rjd_A 2 AVITLQPPWV-SVFQEETVTLHCEVL--HLPGSSSTQWFLNGTATQTST----------PSYRITSASVNDSGEYRCQRG 68 (262)
T ss_dssp CEEEESSCCS-EEETTCCEEEEEECS--SCCCTTCEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEES
T ss_pred CeEecCCCcE-EeeCCCeEEEEEECC--CCCCCceEEEEECCEEeeccC----------CeEEEecCCcccCeEEEEEEe
Confidence 5666666554 688999999999987 46666 999999999886542 368999999999999999998
Q ss_pred ecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEeec
Q psy2148 786 NDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQ 865 (1884)
Q Consensus 786 N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~~~ 865 (1884)
|..+.. .+.|.|..++
T Consensus 69 ~~~~s~--~~~l~v~~~~-------------------------------------------------------------- 84 (262)
T 3rjd_A 69 LSGRSD--PIQLEIHRGW-------------------------------------------------------------- 84 (262)
T ss_dssp SSCCCC--CEEEEEECSS--------------------------------------------------------------
T ss_pred cCCccc--cEEEEEeccc--------------------------------------------------------------
Confidence 865543 3333332211
Q ss_pred CCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEEeeCCC
Q psy2148 866 LPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTND 945 (1884)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~ 945 (1884)
+...+....+.+|+.+.|.|.+.. +.
T Consensus 85 -----------------------------------------------------~~~~~~~~~~~~g~~v~l~C~~~~-~~ 110 (262)
T 3rjd_A 85 -----------------------------------------------------LLLQVSSRVFTEGEPLALRCHAWK-DK 110 (262)
T ss_dssp -----------------------------------------------------EEEEESCSEEETTSCEEEEEEEGG-GC
T ss_pred -----------------------------------------------------eEecCCCeEEecCCeEEEEEEccC-CC
Confidence 111223456788999999999942 67
Q ss_pred CCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHh
Q psy2148 946 PSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFA 1025 (1884)
Q Consensus 946 P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~ 1025 (1884)
|.+.++|+|+|..+... .. ...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...+
T Consensus 111 p~~~v~W~~~g~~~~~~------~~--~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~------------- 169 (262)
T 3rjd_A 111 LVYNVLYYRNGKAFKFF------HW--NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF------------- 169 (262)
T ss_dssp CCEEEEEEETTEEEEEE------EE--CCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS-------------
T ss_pred CCceEEEEECCcccccc------CC--CCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCC-------------
Confidence 88899999999987432 11 1269999999999999999999999999899999997531
Q ss_pred cchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCC-c----EEEEEECCEeccCC
Q psy2148 1026 NATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-M----RIDWFFNGRPFATG 1100 (1884)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~----~v~W~k~~~~l~~~ 1100 (1884)
.+|.+.... ...+.+|+.+.|.|.+. +.|. + .+.|+++|..+...
T Consensus 170 --------------------------~~p~~~~~~--~~~~~~g~~~~l~C~~~--~~p~~p~~~~~~~w~~~~~~~~~~ 219 (262)
T 3rjd_A 170 --------------------------PAPVLNASV--TSPLLEGNLVTLSCETK--LLLQRPGLQLYFSFYMGSKTLRGR 219 (262)
T ss_dssp --------------------------CCCEEEESS--CSSEETTCCEEEEEECC--CCCC-----EEEEEEETTEEEEEE
T ss_pred --------------------------CCCeEeecC--ceeecCCCeEEEEeEcc--cCCCCCCccEEEEEEeCCcEeccc
Confidence 133333322 35678999999999997 5543 3 47899999987531
Q ss_pred CceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeee
Q psy2148 1101 SRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTA 1138 (1884)
Q Consensus 1101 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~ 1138 (1884)
.....|.|.++..+|+|.|+|.|.|..|..
T Consensus 220 --------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 220 --------NTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp --------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred --------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 233479999999999999999999999975
No 83
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=265.30 Aligned_cols=277 Identities=18% Similarity=0.216 Sum_probs=200.4
Q ss_pred CCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEEEE
Q psy2148 705 QAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRA 784 (1884)
Q Consensus 705 ~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 784 (1884)
.+|.|....... .+.+|++++|.|.+.+ .++|++++.. +..+..++....|.|.+++.+|+|.|+|.|
T Consensus 3 ~~P~i~~~~~~~-~v~~G~~v~L~C~~~~------~v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 70 (292)
T 4dkd_C 3 SIPVIEPSVPEL-VVKPGATVTLRCVGNG------SVEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTE 70 (292)
T ss_dssp -CCEEESCCSSC-EECTTCCEEEEEECSS------CCCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECC
T ss_pred CCceecCCCCeE-EEcCCCcEEEEEcCCC------ceEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEE
Confidence 456666655554 7899999999999873 2899976532 344445556779999999999999999999
Q ss_pred EecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecccceEEee
Q psy2148 785 YNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGKRSIILES 864 (1884)
Q Consensus 785 ~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~~~~~~~~ 864 (1884)
.|..|..+..+.|.|..+|..
T Consensus 71 ~n~~~~~~~~~~l~V~~~~~~----------------------------------------------------------- 91 (292)
T 4dkd_C 71 PGDPLGGSAAIHLYVKDPARP----------------------------------------------------------- 91 (292)
T ss_dssp CC----CCEEECCEECCSSCC-----------------------------------------------------------
T ss_pred ccCCCCcceEEEEEEcCcccc-----------------------------------------------------------
Confidence 998887777776666433211
Q ss_pred cCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEEEEEeeCC
Q psy2148 865 QLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTN 944 (1884)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~ 944 (1884)
+...+.+..+.+|+.+.|.|.+.+ +
T Consensus 92 ------------------------------------------------------~~~~~~~~~v~~g~~v~l~C~~~~-~ 116 (292)
T 4dkd_C 92 ------------------------------------------------------WNVLAQEVVVFEDQDALLPCLLTD-P 116 (292)
T ss_dssp ------------------------------------------------------EEESCSEEEEETTSCEECCEEESS-G
T ss_pred ------------------------------------------------------ccccCCeEEEcCCCcEEEeeeCCC-C
Confidence 223345677889999999999983 3
Q ss_pred CCCcEEEEeeC-CEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEE-EEEEEEEEeecccccccchhH
Q psy2148 945 DPSMTVEWFHN-GKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEAT-TSCKLTVKGRQGIDVEPQVSA 1022 (1884)
Q Consensus 945 ~P~~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~~~~~p~~~~ 1022 (1884)
.+.+.|+|+++ +..+..+.++.....++ |.|.+++.+|+|.|+|.|.|..|... ..+.|.|...+.
T Consensus 117 ~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~--------- 184 (292)
T 4dkd_C 117 VLEAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP--------- 184 (292)
T ss_dssp GGGSSEEEEEGGGCCCCSSCCEECCSSSC---CEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCC---------
T ss_pred CcceeEEEEecCCCccccCCcccccCCce---EEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCC---------
Confidence 33378999997 67777766666544443 99999999999999999999988654 478888874211
Q ss_pred hHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCc
Q psy2148 1023 IFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSR 1102 (1884)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~ 1102 (1884)
.+|.+...... ..+.+|+.+.|.|.+.+ ..|.+.+.|++++..+.....
T Consensus 185 -----------------------------~~p~i~~~~~~-~~~~~g~~v~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~ 233 (292)
T 4dkd_C 185 -----------------------------GPPALTLVPAE-LVRIRGEAAQIVCSASS-VDVNFDVFLQHNNTKLAIPQQ 233 (292)
T ss_dssp -----------------------------SSCEEEEESSC-BCCCSSSCEEEEEEEEE-SSSCCEEECCBSSCCCCCCBE
T ss_pred -----------------------------CCCeEEccCCc-eeEecCCCEEEEEEecC-CCCceEEEEeCCCcccccCcc
Confidence 35666554444 56679999999999983 335578999999987764433
Q ss_pred eEEEee--CcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeecc
Q psy2148 1103 VKTVYD--FGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAKH 1150 (1884)
Q Consensus 1103 ~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~ 1150 (1884)
...... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|....
T Consensus 234 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~ 283 (292)
T 4dkd_C 234 SDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283 (292)
T ss_dssp EEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred ceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence 222111 123479999999999999999999999999999999988654
No 84
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.93 E-value=2e-24 Score=258.09 Aligned_cols=195 Identities=21% Similarity=0.331 Sum_probs=164.0
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCC-CcEEEEe-eCCeEEEEEccCCCCCCeEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAG-SRIKTIN-DFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~-~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
.||.|+..+.++.+.+|+.++|.|.+. +.|.+.|+|+|+|..+... .++.+.. .++.+.|.|.+++.+|+|.|+|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 80 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEE--CSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEe--CCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence 589999999999999999999999998 7788999999999999754 4565543 45677899999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 993 ATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|.|..|..+..+.|.|..+|.+... .+.... ..+.+.+|+.+
T Consensus 81 a~n~~g~~~~~~~l~V~~~p~~~~~-------------------------------------~~~~~~-~~~~~~~g~~~ 122 (305)
T 2nzi_A 81 ATNQGGSVSGTASLEVEVPAKIHLP-------------------------------------KTLEGM-GAVHALRGEVV 122 (305)
T ss_dssp EEETTEEEEEEEEEEECEEEEECCC-------------------------------------HHHHSS-CCEEEETTCCE
T ss_pred EEcCCCCccceEEEEEecCCccCCC-------------------------------------cccccc-ccEEecCCCEE
Confidence 9999999999999999876654221 111111 12456789999
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcc-cCcCCcEEEEEEEEcCCeeeEEEEEEEEeeccc
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDY-VYARDSGEYICRATNKWGTAMTKAKVICKAKHD 1151 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~~ 1151 (1884)
.|.|.+. |.|.+.|.|++++..+..+.++.+........|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus 123 ~l~C~~~--g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~ 200 (305)
T 2nzi_A 123 SIKIPFS--GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPD 200 (305)
T ss_dssp EEEEEEE--EESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCC
T ss_pred EEEEEEC--CCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCC
Confidence 9999997 7788899999999999888888777666778899999 999999999999999999999999999886543
No 85
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.93 E-value=1.4e-24 Score=252.70 Aligned_cols=246 Identities=18% Similarity=0.198 Sum_probs=178.4
Q ss_pred CCCeEEEccCCccccccccceEEEEEEeeCC-CCCC--eEEEeecCeecCCCCCceeeeeCceEEEEEee---eccCCCe
Q psy2148 1423 QPPRFVTQIKTQDQLVEMQSTKFECQLAPVG-DPNM--KVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGW---VYPEDSG 1496 (1884)
Q Consensus 1423 ~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g-~p~~--~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~---~~~~d~G 1496 (1884)
.+|.+..+ ..+.+|+.++|.|.+. | .|.+ .|+|+|+|..+.. .+...++ .|.+.. ++.+|+|
T Consensus 5 ~~p~~~~~----~~v~~G~~v~l~C~~~--g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g 72 (265)
T 2oz4_A 5 TPPQLVSP----RVLEVDTQGTVVCSLD--GLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEG 72 (265)
T ss_dssp SCCEEECC----SEEETTEEEEEEEEEE--SCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCE
T ss_pred CCCccccC----ceEecCCCEEEEEEcc--CCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCC
Confidence 35665432 2478999999999997 6 7877 9999999999865 2333344 344443 3778888
Q ss_pred E--EEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCccccc
Q psy2148 1497 E--YLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKV 1574 (1884)
Q Consensus 1497 ~--Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v 1574 (1884)
. |+|.|.|..|..+.++.|.|...| +|.+. +.+
T Consensus 73 ~g~Y~C~a~n~~~~~~~~~~l~V~~~p----------------------------------------~p~~~--~~~--- 107 (265)
T 2oz4_A 73 TQRLTCAVILGNQSQETLQTVTIYSFP----------------------------------------APNVI--LTK--- 107 (265)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEECCC----------------------------------------CCEEE--ESC---
T ss_pred cceEEEEEecCCCCcEEEEEEEEeCCC----------------------------------------Cceee--cCC---
Confidence 5 999999999998888888886432 12221 111
Q ss_pred ccCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCC
Q psy2148 1575 QEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQ 1654 (1884)
Q Consensus 1575 ~~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G 1654 (1884)
..+.+|
T Consensus 108 --------------------------------------------------------------------------~~v~~G 113 (265)
T 2oz4_A 108 --------------------------------------------------------------------------PEVSEG 113 (265)
T ss_dssp --------------------------------------------------------------------------SEEETT
T ss_pred --------------------------------------------------------------------------ceecCC
Confidence 234456
Q ss_pred CeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeC-CceEE---EEEEEEEE
Q psy2148 1655 DQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR-GGKAK---CSANLVVE 1730 (1884)
Q Consensus 1655 ~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~-~g~~~---~~~~l~V~ 1730 (1884)
+.+.|.|.+. |.+.++| +|..+... +..+.|.|..+..+|+|.|+|.|.|. .|... ..+.|.|.
T Consensus 114 ~~v~l~C~~~--p~~~i~W--~g~~~~~~--------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~ 181 (265)
T 2oz4_A 114 TEVTVKCEAH--PRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181 (265)
T ss_dssp CEEEEEEECC--TTSEEEE--SSCSSSCC--------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred CcEEEEEEcc--CCCEEEE--CCEEccCC--------CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEE
Confidence 6666666665 6666677 55554221 12355889999999999999999864 47655 77888888
Q ss_pred ecccCCCCCCCCCeEEec--cCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCC
Q psy2148 1731 EKRQGGRGGVVPPSFLTT--ISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVE 1808 (1884)
Q Consensus 1731 ~~~~~~~~~~~~P~~~~~--~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~ 1808 (1884)
. +|.+... +....+.+|+.++|.|.+.|.|.|.|.|+|+|..+. ..+. | ..+..+
T Consensus 182 ~----------~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~--------~~g~---~--~~v~~~ 238 (265)
T 2oz4_A 182 Y----------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL--------PIGE---S--VTVTRD 238 (265)
T ss_dssp E----------EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEEC--------CTTS---C--EECCGG
T ss_pred e----------CCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccC--------CCCc---E--EEeehh
Confidence 5 4545433 456788999999999999999999999999997322 2221 2 237789
Q ss_pred CCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1809 DSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1809 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
|+|.|+|.|.|..|..+.++.|.|+.
T Consensus 239 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 239 LEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hCeEEEEEEECCCCcEEEEEEEEEec
Confidence 99999999999999999999999985
No 86
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.93 E-value=7.5e-25 Score=264.24 Aligned_cols=267 Identities=19% Similarity=0.262 Sum_probs=172.0
Q ss_pred cccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCC---------CCCCeEEEee-----CCEEEEEEcccCcCCCeEEEE
Q psy2148 717 DDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMK---------TGSRFRTFCD-----FGFVILEISPVYPEDCGQYSC 782 (1884)
Q Consensus 717 ~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~---------~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C 782 (1884)
..+.+|+++.|.|.+.+ ..|.+.++|+|++.++. ...++.+..+ .....|.|.+++.+|+|.|+|
T Consensus 13 ~~v~~G~~v~L~C~~~~-~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 91 (327)
T 2wng_A 13 VSVAAGESAILHCTVTS-LIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYC 91 (327)
T ss_dssp EEEETTSCEEECCEESC-CCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEE
T ss_pred eEEecCCcEEEEEEccC-cCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEE
Confidence 37899999999999984 23788999999986542 1124443322 344579999999999999999
Q ss_pred EEEecCceEE-----EEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecc
Q psy2148 783 RAYNDYGEAV-----TSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGK 857 (1884)
Q Consensus 783 ~a~N~~g~~~-----~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~ 857 (1884)
.|.|..|... ..+.|.|...|
T Consensus 92 ~a~n~~~~~~~~~~~~~~~l~V~~~p------------------------------------------------------ 117 (327)
T 2wng_A 92 VKFRKGSPDTEFKSGAGTELSVRAKP------------------------------------------------------ 117 (327)
T ss_dssp EEEESSTTCEEEEECCCEEEEEEBCC------------------------------------------------------
T ss_pred EeecCCCcceeEeecCcEEEEEEecC------------------------------------------------------
Confidence 9999766421 12233332111
Q ss_pred cceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEE
Q psy2148 858 RSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFE 937 (1884)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~ 937 (1884)
.+|.+. .....+.+|+.+.|.
T Consensus 118 ---------------------------------------------------------~~p~i~--~~~~~~~~g~~~~l~ 138 (327)
T 2wng_A 118 ---------------------------------------------------------SAPVVS--GPAARATPQHTVSFT 138 (327)
T ss_dssp ---------------------------------------------------------CCCEEE--CCSSCBCTTCEEEEE
T ss_pred ---------------------------------------------------------CCceee--ccccccCCCCEEEEE
Confidence 123333 123567899999999
Q ss_pred EEEeeCCCCCcEEEEeeCCEEccCCCcEEEEe-eCC----eEEEEEccCCCCCCeEEEEEEEcCCeeE---EEEEEEEEE
Q psy2148 938 CRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN-DFG----FVILEINDVYLRDSGLYTCKATNKHGEA---TTSCKLTVK 1009 (1884)
Q Consensus 938 C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~-~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~---~~~~~l~V~ 1009 (1884)
|.+.+.+.|+..|+|+|+|..|.......... .++ .+.|.|.....+|+|.|+|.|.|..|.. ..++.+.+.
T Consensus 139 C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~ 218 (327)
T 2wng_A 139 CESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET 218 (327)
T ss_dssp EEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT
T ss_pred EEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc
Confidence 99995322223999999999997654322211 111 2358888877788899999999988762 333333221
Q ss_pred eecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EE
Q psy2148 1010 GRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RI 1088 (1884)
Q Consensus 1010 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v 1088 (1884)
. ..+|.+...... +.+|+.+.|.|.+.+. .|.+ .|
T Consensus 219 v----------------------------------------~~~P~i~~~~~~---~~~G~~v~l~C~~~g~-~p~~~~v 254 (327)
T 2wng_A 219 I----------------------------------------RVPPTLEVTQQP---VRAENQVNVTCQVRKF-YPQRLQL 254 (327)
T ss_dssp B----------------------------------------CBCCEEEEEEEC---CSSTTCCEEEEEEEEE-BSSCEEE
T ss_pred c----------------------------------------CCCCEEEEecCC---cCCCCcEEEEEEEccc-cCCCcEE
Confidence 0 145655544333 6799999999999832 3433 89
Q ss_pred EEEECCEeccCCCceEE-EeeCcE----EEEEEcccCcCCcEEEEEEEEcCCeeeEEE
Q psy2148 1089 DWFFNGRPFATGSRVKT-VYDFGF----ISLDMDYVYARDSGEYICRATNKWGTAMTK 1141 (1884)
Q Consensus 1089 ~W~k~~~~l~~~~~~~~-~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~ 1141 (1884)
.|+|||+.+..+..... ...++. ..|.|..+..+|+|.|+|.|.|..|...+.
T Consensus 255 ~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~ 312 (327)
T 2wng_A 255 TWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSK 312 (327)
T ss_dssp EEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEE
T ss_pred EEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchh
Confidence 99999999864321111 122222 468999999999999999999999976443
No 87
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=264.63 Aligned_cols=274 Identities=17% Similarity=0.194 Sum_probs=196.8
Q ss_pred CCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEEEE
Q psy2148 1423 QPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRA 1502 (1884)
Q Consensus 1423 ~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c~a 1502 (1884)
.||.|...+... .+.+|+.++|.|.+. |. |.|++++.. ++.....+...+|.|.+++.+|+|.|+|.|
T Consensus 3 ~~P~i~~~~~~~-~v~~G~~v~L~C~~~--~~----v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 70 (292)
T 4dkd_C 3 SIPVIEPSVPEL-VVKPGATVTLRCVGN--GS----VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTE 70 (292)
T ss_dssp -CCEEESCCSSC-EECTTCCEEEEEECS--SC----CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECC
T ss_pred CCceecCCCCeE-EEcCCCcEEEEEcCC--Cc----eEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEE
Confidence 578887666554 689999999999975 53 999976532 334444556679999999999999999999
Q ss_pred EecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccccCCceEE
Q psy2148 1503 TNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQEGEPARF 1582 (1884)
Q Consensus 1503 ~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~g~~~~l 1582 (1884)
.|..|..+.++.|.|.++|.. +...+
T Consensus 71 ~n~~~~~~~~~~l~V~~~~~~-----------------------------------------~~~~~------------- 96 (292)
T 4dkd_C 71 PGDPLGGSAAIHLYVKDPARP-----------------------------------------WNVLA------------- 96 (292)
T ss_dssp CC----CCEEECCEECCSSCC-----------------------------------------EEESC-------------
T ss_pred ccCCCCcceEEEEEEcCcccc-----------------------------------------ccccC-------------
Confidence 999888877788887643210 11111
Q ss_pred EEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEE
Q psy2148 1583 CTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVE 1662 (1884)
Q Consensus 1583 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 1662 (1884)
....+.+|+.+.|.|.
T Consensus 97 ----------------------------------------------------------------~~~~v~~g~~v~l~C~ 112 (292)
T 4dkd_C 97 ----------------------------------------------------------------QEVVVFEDQDALLPCL 112 (292)
T ss_dssp ----------------------------------------------------------------SEEEEETTSCEECCEE
T ss_pred ----------------------------------------------------------------CeEEEcCCCcEEEeee
Confidence 2234556666777777
Q ss_pred EeccCC--CeEEEEeC-CeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEE-EEEEEEEEecccCCCC
Q psy2148 1663 FDGDPL--PTIKWFRE-DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRG 1738 (1884)
Q Consensus 1663 ~~g~p~--~~i~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~ 1738 (1884)
+.+ |. +.++|+++ +..+....++.+ .....|.|.++..+|+|.|+|.|.|..|... ..+.|.|.....
T Consensus 113 ~~~-~~~~~~v~W~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~---- 184 (292)
T 4dkd_C 113 LTD-PVLEAGVSLVRVRGRPLMRHTNYSF---SPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP---- 184 (292)
T ss_dssp ESS-GGGGSSEEEEEGGGCCCCSSCCEEC---CSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCC----
T ss_pred CCC-CCcceeEEEEecCCCccccCCcccc---cCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCC----
Confidence 665 43 67888876 445544443332 2233499999999999999999999877654 478888885321
Q ss_pred CCCCCeEEeccCceEEcCCceEEEEEEEecCCC-cEEEEEeCCEecCCCCCeEEeec--CCeEEEEEccCCCCCCEEEEE
Q psy2148 1739 GVVPPSFLTTISSAVINVGQLARFDAKISATKP-LDVYWLKNGKKIIPDIRYKTLEE--DNLFTLLIIEAVVEDSGAYEC 1815 (1884)
Q Consensus 1739 ~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~k~~~~l~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C 1815 (1884)
.+|.+...+....+.+|+.++|.|.+.|.|. +.+.|++++..+.......+... .....|.|.++..+|+|.|+|
T Consensus 185 --~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 262 (292)
T 4dkd_C 185 --GPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSC 262 (292)
T ss_dssp --SSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEE
T ss_pred --CCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEE
Confidence 3899998888888889999999999999765 57999999987754433222211 123489999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEecC
Q psy2148 1816 VAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1816 ~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
.|.|..|..+.++.|.|.+..
T Consensus 263 ~a~N~~g~~~~~~~l~V~~~~ 283 (292)
T 4dkd_C 263 VASNVQGKHSTSMFFRVVESA 283 (292)
T ss_dssp EEECSSCEEEEEEEECC----
T ss_pred EEecCCCCceeEEEEEEeeCC
Confidence 999999999999999998754
No 88
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.93 E-value=2.3e-23 Score=265.84 Aligned_cols=434 Identities=10% Similarity=0.089 Sum_probs=237.0
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCCC--cEEEEeeC--CEEc---c-------------CCCcEEEEee--CCeEEEEEc
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDPS--MTVEWFHN--GKAL---S-------------AGSRIKTIND--FGFVILEIN 979 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P~--~~v~W~~~--g~~i---~-------------~~~~~~~~~~--~~~~~L~I~ 979 (1884)
.+..+.+.+|++++|.|.+.+..... ..|.|||. |..+ . ...|+.+..+ .+.+.|.|.
T Consensus 6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (512)
T 1zvo_C 6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR 85 (512)
T ss_pred CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence 35678899999999999998321122 68999995 3211 0 1356666543 346789999
Q ss_pred cCCCCCCeEEEEEEEcCCe----------e---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCC
Q psy2148 980 DVYLRDSGLYTCKATNKHG----------E---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIP 1046 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~G----------~---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1884)
+++.+|+|.|.|.+.+..| . ....+.|+|...+.
T Consensus 86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~--------------------------------- 132 (512)
T 1zvo_C 86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPT--------------------------------- 132 (512)
T ss_pred cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCC---------------------------------
Confidence 9999999999999998753 1 12345677763211
Q ss_pred CCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeCc----EEEEEEcccCc
Q psy2148 1047 DEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDFG----FISLDMDYVYA 1121 (1884)
Q Consensus 1047 ~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~ 1121 (1884)
.+|.+............|+.+.|.|.+.+ ..|.+ .|.|++++..............++ .+.|.|.....
T Consensus 133 -----~~P~i~~~~~~~~~~~~~~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~ 206 (512)
T 1zvo_C 133 -----KAPDVFPIISGCRHPKDNSPVVLACLITG-YHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQW 206 (512)
T ss_pred -----cCCeEEeccCCcccccCCCeEEEEEEEEe-eecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHc
Confidence 23333211111010124689999999983 34654 899999764321000000111112 23588887777
Q ss_pred CCcEEEEEEEEcCCeeeEEEE-----------EEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCc
Q psy2148 1122 RDSGEYICRATNKWGTAMTKA-----------KVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPR 1190 (1884)
Q Consensus 1122 ~d~G~Y~C~a~n~~G~~~~~~-----------~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1884)
+ .|.|+|.|.|..|.....+ .+.+..+|.+...- .. ..+ .+.. ...++
T Consensus 207 ~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~~~-----~~-------~~~-~~~~---~~~g~---- 265 (512)
T 1zvo_C 207 R-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSL-----AK-------ATT-APAT---TRNTG---- 265 (512)
T ss_pred C-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchhccc-----cc-------ccc-Cchh---hccCc----
Confidence 7 9999999999999776554 22222222100000 00 000 0000 00000
Q ss_pred cccchhcccccccccccchhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCee-Ee
Q psy2148 1191 LNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRF-IT 1269 (1884)
Q Consensus 1191 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~ 1269 (1884)
. +.....|..++ +.| .+. . ..+........+|.+ ..
T Consensus 266 ~------~~~~~~~~~~~---------------~~h--------~~~-----------~---~~~~~~~~~~~~p~v~~~ 302 (512)
T 1zvo_C 266 R------GGEEKKKEKEK---------------EEQ--------EER-----------E---TKTPECPSHTQPLGVYLL 302 (512)
T ss_pred c------cccceeccCCc---------------ccc--------ccc-----------C---cccccCCCCCCCCEEEEE
Confidence 0 00011111111 000 000 0 000000112234554 33
Q ss_pred ecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeeccc
Q psy2148 1270 EIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPE 1349 (1884)
Q Consensus 1270 ~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 1349 (1884)
.+....+.+|+.++|.|.+.+..++...|.|++++..+...... ..........-.....|.|..+..+
T Consensus 303 ~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~-----------~~~~~~~~gt~~~~s~L~i~~~~~~ 371 (512)
T 1zvo_C 303 TPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEE-----------GLLERHSNGSQSQHSRLTLPRSLWN 371 (512)
T ss_pred CCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceec-----------cceecCCCCeEEEEEEEEEchHHhc
Confidence 45556678999999999998753335699999999864411000 0000000000012357999999999
Q ss_pred CceEEEEEEEccccceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCccCCcccCCCCeEEE
Q psy2148 1350 DQGEYVCRAYNDHGEAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDLYEPEKKQPPRFVT 1429 (1884)
Q Consensus 1350 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~ 1429 (1884)
|.|.|+|.|.|.++... ...+... ... ....+|.+..
T Consensus 372 d~g~y~C~a~n~~~~~~-~~~~~~~--~~~----------------------------------------~~~~~p~v~~ 408 (512)
T 1zvo_C 372 AGTSVTCTLNHPSLPPQ-RLMALRE--PAA----------------------------------------QAPVKLSLNL 408 (512)
T ss_pred CCCeEEEEEEeCCCCCC-ceeEEee--cCC----------------------------------------CCCCCCEEEE
Confidence 99999999999887543 2222210 000 0012455443
Q ss_pred ccCCccccccccceE-EEEEEeeCCCCC--CeEEEeecCeecCCCCCce---eeeeCc--e---EEEEEeeeccCCCeEE
Q psy2148 1430 QIKTQDQLVEMQSTK-FECQLAPVGDPN--MKVEWFLNGKPLPHKNRFN---PIYDFG--Y---VAMNFGWVYPEDSGEY 1498 (1884)
Q Consensus 1430 ~~~~~~~v~~g~~~~-l~C~~~~~g~p~--~~i~W~~~~~~l~~~~~~~---~~~~~~--~---~~L~i~~~~~~d~G~Y 1498 (1884)
.+... .|+.+. |.|.+. |.++ ..|.|+|||..+....... ....++ + ..|.|.....+|.|.|
T Consensus 409 ~~~~~----~~~~~~~L~C~~~--g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~Y 482 (512)
T 1zvo_C 409 LASSD----PPEAASWLLCEVS--GFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATY 482 (512)
T ss_pred EccCc----CCCCceEEEEEEe--eeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeE
Confidence 33221 688899 999996 7544 4689999999997642111 112233 2 3566666666779999
Q ss_pred EEEEEecCcceE--EEEEEEEe
Q psy2148 1499 LCRATNLYGMDE--TRAILKTT 1518 (1884)
Q Consensus 1499 ~c~a~n~~G~~~--~~~~l~V~ 1518 (1884)
+|.|.|...... ....|.|.
T Consensus 483 tC~v~h~~l~~~~~~~~~~~v~ 504 (512)
T 1zvo_C 483 TCVVSHEDSRTLLNASRSLEVS 504 (512)
T ss_pred EEEEEecCCCCceEEEEEEEec
Confidence 999999865433 33444443
No 89
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=262.46 Aligned_cols=278 Identities=15% Similarity=0.205 Sum_probs=183.3
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCC-CCcEEEEeeCCEEcc---------CCCcEEEEee-----CCeEEEEEcc
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTND-PSMTVEWFHNGKALS---------AGSRIKTIND-----FGFVILEIND 980 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~-P~~~v~W~~~g~~i~---------~~~~~~~~~~-----~~~~~L~I~~ 980 (1884)
...|+..+.++.+.+|+++.|.|.+. +. |.+.|+|+|++.++. ...++....+ .+...|.|.+
T Consensus 3 ~~~v~~~p~~~~v~~G~~v~L~C~~~--~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~ 80 (327)
T 2wng_A 3 ELQVIQPDKSVSVAAGESAILHCTVT--SLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISN 80 (327)
T ss_dssp CCCEECCCSEEEEETTSCEEECCEES--CCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECS
T ss_pred eeEEEcCCCceEEecCCcEEEEEEcc--CcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEcc
Confidence 45677888899999999999999998 44 778999999986431 1125544322 3345799999
Q ss_pred CCCCCCeEEEEEEEcCCeeE-----EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCc
Q psy2148 981 VYLRDSGLYTCKATNKHGEA-----TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055 (1884)
Q Consensus 981 ~~~~D~G~Y~C~a~N~~G~~-----~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1055 (1884)
++.+|+|.|+|.|.|..|.. +..+.|.|..+|. +|.
T Consensus 81 v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~---------------------------------------~p~ 121 (327)
T 2wng_A 81 ITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPS---------------------------------------APV 121 (327)
T ss_dssp CCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCC---------------------------------------CCE
T ss_pred CccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCC---------------------------------------Cce
Confidence 99999999999999987641 2346788875432 233
Q ss_pred eeeecCCCcCcCCCCcEEEEEEEeeCCCCCc--EEEEEECCEeccCCCceEEEe-eCc----EEEEEEcccCcCCcEEEE
Q psy2148 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM--RIDWFFNGRPFATGSRVKTVY-DFG----FISLDMDYVYARDSGEYI 1128 (1884)
Q Consensus 1056 ~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~--~v~W~k~~~~l~~~~~~~~~~-~~~----~~~l~i~~~~~~d~G~Y~ 1128 (1884)
+.. ....+.+|+.+.|.|.+. |.|.+ .|.|+|+|+.+..+....... .++ ...|.|.....+|+|.|+
T Consensus 122 i~~---~~~~~~~g~~~~l~C~~~--g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~ 196 (327)
T 2wng_A 122 VSG---PAARATPQHTVSFTCESH--GFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVI 196 (327)
T ss_dssp EEC---CSSCBCTTCEEEEEEEEE--EEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEE
T ss_pred eec---cccccCCCCEEEEEEEEe--CccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEE
Confidence 321 125678999999999998 44433 899999999997653322111 111 235788877777899999
Q ss_pred EEEEcCCeee-EEEEEEEEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhccccccccccc
Q psy2148 1129 CRATNKWGTA-MTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDS 1207 (1884)
Q Consensus 1129 C~a~n~~G~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 1207 (1884)
|.|.|..|.. .......+..
T Consensus 197 C~a~n~~~~~~~~~~~~~~~~----------------------------------------------------------- 217 (327)
T 2wng_A 197 CEVAHVTLQGDPLRGTANLSE----------------------------------------------------------- 217 (327)
T ss_dssp EEEECTTSCSCCEEEEEEGGG-----------------------------------------------------------
T ss_pred EEEeccccCCCcccceEEecc-----------------------------------------------------------
Confidence 9999998753 1111111100
Q ss_pred chhhhhhhccccccccccccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEE
Q psy2148 1208 ELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETR 1287 (1884)
Q Consensus 1208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~ 1287 (1884)
....+|.|...+.. +.+|+.++|.|.
T Consensus 218 ----------------------------------------------------~v~~~P~i~~~~~~--~~~G~~v~l~C~ 243 (327)
T 2wng_A 218 ----------------------------------------------------TIRVPPTLEVTQQP--VRAENQVNVTCQ 243 (327)
T ss_dssp ----------------------------------------------------TBCBCCEEEEEEEC--CSSTTCCEEEEE
T ss_pred ----------------------------------------------------ccCCCCEEEEecCC--cCCCCcEEEEEE
Confidence 01234556555444 789999999999
Q ss_pred EeecCCCcceEEEecccccccccccccceEEEeeccceeeeeeeeeeeec----eEEEEEeeecccCceEEEEEEEcccc
Q psy2148 1288 VEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAVIFSHPIFDLG----FVSLDIDYVYPEDQGEYVCRAYNDHG 1363 (1884)
Q Consensus 1288 v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~I~~~~~~d~G~Y~C~a~n~~g 1363 (1884)
+.+...+...+.|+++|..+...... . ......+ ...|.|..+..+|+|.|+|.|.|.+|
T Consensus 244 ~~g~~p~~~~v~W~k~g~~l~~~~~~------------~----~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~ 307 (327)
T 2wng_A 244 VRKFYPQRLQLTWLENGNVSRTETAS------------T----VTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQ 307 (327)
T ss_dssp EEEEBSSCEEEEEEETTEEEEEEECC------------S----CEECTTSCEEEEEEEEC-------CCEEEEEEEETTC
T ss_pred EccccCCCcEEEEEECCeEccCcccC------------c----eEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCC
Confidence 99744444589999999876543110 0 0001111 24689999999999999999999998
Q ss_pred ceeee
Q psy2148 1364 EAFTK 1368 (1884)
Q Consensus 1364 ~~~~~ 1368 (1884)
...+.
T Consensus 308 ~~~s~ 312 (327)
T 2wng_A 308 PAVSK 312 (327)
T ss_dssp CCEEE
T ss_pred CCchh
Confidence 65443
No 90
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.3e-24 Score=255.11 Aligned_cols=260 Identities=14% Similarity=0.116 Sum_probs=171.5
Q ss_pred cccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCc-eEEEEEeeeccCCCeEEEEEEEecCcc---eE
Q psy2148 1435 DQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFG-YVAMNFGWVYPEDSGEYLCRATNLYGM---DE 1510 (1884)
Q Consensus 1435 ~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~c~a~n~~G~---~~ 1510 (1884)
..+.+|+.++|.|.+. |. |+|++++..+.. +......+. ..+|.|.+++.+|+|.|+|.|.|..|. ..
T Consensus 10 ~~v~~G~~v~L~C~~~--~~----v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~ 81 (289)
T 3mjg_X 10 LVLNVSSTFVLTCSGS--AP----VVWERMSQEPPQ--EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDER 81 (289)
T ss_dssp EECCTTCCEEEEEEES--SC----CEEEBTTBCCSE--EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCC
T ss_pred EEEeCCCcEEEEEecc--ce----EEEECCCCCccc--ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcE
Confidence 4588999999999985 53 999999988732 222112222 368999999999999999999999876 23
Q ss_pred EEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCc--ccccccCCceEEEEEEec
Q psy2148 1511 TRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPE--AQKVQEGEPARFCTRVTG 1588 (1884)
Q Consensus 1511 ~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~--~~~v~~g~~~~l~C~~~g 1588 (1884)
.++.|.|.+++ .|.+...+. ...+.+|+.+.|.|.+.
T Consensus 82 ~~~~v~v~~p~----------------------------------------~~~~~~~~~~~~~~v~~G~~v~l~C~~~- 120 (289)
T 3mjg_X 82 KRLYIFVPDPT----------------------------------------VGFLPNDAEELFIFLTEITEITIPCRVT- 120 (289)
T ss_dssp EEEEEECCCTT----------------------------------------CCBCCCCHHHHEEEESSCCCEEECCCBS-
T ss_pred EeEEEEEECCC----------------------------------------cCcccCCCCcceEEeecCCeEEEEeEcC-
Confidence 34444443211 111111111 13455666666666665
Q ss_pred CCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCCeEEEEEEEeccCC
Q psy2148 1589 YPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPL 1668 (1884)
Q Consensus 1589 ~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~ 1668 (1884)
.|.|.++|++++.
T Consensus 121 ~p~~~v~w~~~~~------------------------------------------------------------------- 133 (289)
T 3mjg_X 121 DPQLVVTLHEKKG------------------------------------------------------------------- 133 (289)
T ss_dssp CTTSCEEEEESSC-------------------------------------------------------------------
T ss_pred CCCceEEEEeCCC-------------------------------------------------------------------
Confidence 4555555555431
Q ss_pred CeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEE-EEEEEEEecccCCCCCCCCCeEEe
Q psy2148 1669 PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLT 1747 (1884)
Q Consensus 1669 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~P~~~~ 1747 (1884)
+.++.. . ...... +. ...|+|.|+|.|.|..+.... ...|.|... .+|.+..
T Consensus 134 --------~~~~~~--~----~~~~~~-~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~--------~~p~i~~ 186 (289)
T 3mjg_X 134 --------DVALPV--P----YDHQRG-FS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV--------SSINVSV 186 (289)
T ss_dssp --------CSCCCC--C----EETTTE-EE----ECCCSSEEEEEEEETTEEEECCCEEEEECCC--------CCCCCEE
T ss_pred --------CCccce--e----ecCCcC-ee----eeccCcEEEEEEEeCCceeeeeeEEEEecCC--------CCCCcEE
Confidence 111110 0 000011 11 257999999999988765443 356666532 3677777
Q ss_pred ccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEee-----cCCeEEEEEccCCCCCCEEEEEEEEeCCe
Q psy2148 1748 TISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE-----EDNLFTLLIIEAVVEDSGAYECVAMNNAG 1822 (1884)
Q Consensus 1748 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G 1822 (1884)
.+....+.+|++++|.|.+.|.|.|.|+|+++++............ ......|.|.++..+|+|.|+|.|.|..|
T Consensus 187 ~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 266 (289)
T 3mjg_X 187 NAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVN 266 (289)
T ss_dssp EESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTT
T ss_pred eCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCC
Confidence 7777889999999999999999999999999887654332221111 12456999999999999999999999999
Q ss_pred eEEEEEEEEEEecCC
Q psy2148 1823 EARCEAELVVQSKKA 1837 (1884)
Q Consensus 1823 ~~~~~~~l~V~~~~~ 1837 (1884)
....++.|+|.+.+.
T Consensus 267 ~~~~~~~l~v~~~~~ 281 (289)
T 3mjg_X 267 DHQDEKAINITVVES 281 (289)
T ss_dssp TEEEEEEEEEEEEC-
T ss_pred CceeEEEEEEEEEec
Confidence 999999999998654
No 91
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.92 E-value=1.4e-23 Score=231.40 Aligned_cols=190 Identities=31% Similarity=0.556 Sum_probs=172.6
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCC--CeEEEEeCceeEEEEcccccCCCeEEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSP--DFQIHTFSTKSILIMRQVFMEDSGVFAVIA 1714 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a 1714 (1884)
..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+.... ++.+........|.|.++..+|+|.|+|.+
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 82 (194)
T 2a38_A 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA 82 (194)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEE
Confidence 346888888999999999999999999999999999999999887654 667777777889999999999999999999
Q ss_pred EeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeec
Q psy2148 1715 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794 (1884)
Q Consensus 1715 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~ 1794 (1884)
.|..|.....+.|.|.... .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+..+
T Consensus 83 ~n~~~~~~~~~~l~v~~~~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~ 155 (194)
T 2a38_A 83 TNGSGQATSTAELLVKAET-------APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE 155 (194)
T ss_dssp EETTEEEEEEEEEEEECCC-------EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEE
T ss_pred EcCCceEeEEEEEEEccCC-------CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEc
Confidence 9999999888999998532 478888888889999999999999999999999999999999998889988888
Q ss_pred CCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1795 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
+..+.|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 156 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 156 GDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 888899999999999999999999999999999999884
No 92
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.92 E-value=1.8e-24 Score=259.37 Aligned_cols=278 Identities=13% Similarity=0.156 Sum_probs=179.6
Q ss_pred ccCCCeeeecCCCccccCCCCcEEEEEEEeecCCCCCeEEEeeCCccCCCCCCeEEEeeCCEEEEEEcccCcCCCeEEEE
Q psy2148 703 HRQAPVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSC 782 (1884)
Q Consensus 703 ~~~~p~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 782 (1884)
...+|.|...+.. .+.+|++++|.|.+.+ . .+.+.|+|+|..+...... ......|.|.+++.+|+|.|+|
T Consensus 21 ~~~~P~i~~~p~~--~v~~G~~v~L~C~~~~--~-~~~~~W~k~g~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C 91 (316)
T 3vh8_G 21 GQDKPFLSAWPSA--VVPRGGHVTLRCHYRH--R-FNNFMLYKEDRIHIPIFHG----RIFQESFNMSPVTTAHAGNYTC 91 (316)
T ss_dssp ---CCEEEEESCS--EEETTSCEEEEEEBTT--B-CCSEEEEESSCSSSCHHHH----CCBSSCEEECSCCGGGCEEEEE
T ss_pred CCCCCEeeccCCC--ccCCCCCEEEEEEccC--C-CceEEEEeCCCccceeecC----CcceEEEEECCCCcccCeEEEE
Confidence 4467788777653 6889999999999874 3 5899999999876432110 1122469999999999999999
Q ss_pred EEEecCce-----EEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecc
Q psy2148 783 RAYNDYGE-----AVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGK 857 (1884)
Q Consensus 783 ~a~N~~g~-----~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~ 857 (1884)
.|.|..+. .+..+.|.|...
T Consensus 92 ~a~~~~~~~~~~~~s~~~~l~V~~~------------------------------------------------------- 116 (316)
T 3vh8_G 92 RGSHPHSPTGWSAPSNPVVIMVTGN------------------------------------------------------- 116 (316)
T ss_dssp EEBCSSSSSSBCCCCCCEEEEEECS-------------------------------------------------------
T ss_pred EEEcCCCCcceecCCCcEEEEEecC-------------------------------------------------------
Confidence 99874321 122222322110
Q ss_pred cceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEE
Q psy2148 858 RSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFE 937 (1884)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~ 937 (1884)
..+|.+...+... +.+|++++|.
T Consensus 117 --------------------------------------------------------~~~p~~~~~~~~~-v~~G~~v~L~ 139 (316)
T 3vh8_G 117 --------------------------------------------------------HRKPSLLAHPGPL-VKSGERVILQ 139 (316)
T ss_dssp --------------------------------------------------------SCCCEEEEESCSE-EETTCCEEEE
T ss_pred --------------------------------------------------------CCCCeEEecCCCc-cCCCCeEEEE
Confidence 0234454444443 7899999999
Q ss_pred EEEeeCCCCCcEEEEeeCCEEccCCCcEE-EEeeCCeEEEEEccCCCCCCeEEEEEEEcCCee-----EEEEEEEEEEee
Q psy2148 938 CRLTPTNDPSMTVEWFHNGKALSAGSRIK-TINDFGFVILEINDVYLRDSGLYTCKATNKHGE-----ATTSCKLTVKGR 1011 (1884)
Q Consensus 938 C~v~~~~~P~~~v~W~~~g~~i~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-----~~~~~~l~V~~~ 1011 (1884)
|.+. + +.+.+.|+|+|..+....... .........|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...
T Consensus 140 C~~~--~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~ 216 (316)
T 3vh8_G 140 CWSD--I-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP 216 (316)
T ss_dssp EEES--S-CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECS
T ss_pred EcCC--C-CCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCC
Confidence 9995 3 456899999998875432221 111123457999999999999999999999874 245567777642
Q ss_pred cccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEE
Q psy2148 1012 QGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWF 1091 (1884)
Q Consensus 1012 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~ 1091 (1884)
+ .+|.+..... ..+.+|+.++|.|.+. .|.+.+.|+
T Consensus 217 ~---------------------------------------~~p~i~~~~~--~~v~~G~~v~L~C~~~---~~~~~~~W~ 252 (316)
T 3vh8_G 217 Y---------------------------------------EKPSLSAQPG--PKVQAGESVTLSCSSR---SSYDMYHLS 252 (316)
T ss_dssp S---------------------------------------CCCEEEEESC--SCCCTTSCCEEEEEES---SCCSEEEEE
T ss_pred C---------------------------------------CCCeEEeCCC--CeecCCCcEEEEEECC---CCCcEEEEE
Confidence 1 2444444322 3678999999999995 467899999
Q ss_pred ECCEeccCCCceEEEee-CcEEEEEEcccCcCCcEEEEEEEEcCCee-----eEEEEEEEEeecc
Q psy2148 1092 FNGRPFATGSRVKTVYD-FGFISLDMDYVYARDSGEYICRATNKWGT-----AMTKAKVICKAKH 1150 (1884)
Q Consensus 1092 k~~~~l~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~-----~~~~~~l~v~~~~ 1150 (1884)
|+|..+........... .....|.|.+++ |+|.|+|.|.|..+. .+..+.|.|.++|
T Consensus 253 k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 253 REGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp ETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred ECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 99988764322111111 123689999998 999999999998763 3445666666543
No 93
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.91 E-value=2.3e-24 Score=258.33 Aligned_cols=277 Identities=12% Similarity=0.104 Sum_probs=173.4
Q ss_pred cCCCCeEEEccCCccccccccceEEEEEEeeCCCCCCeEEEeecCeecCCCCCceeeeeCceEEEEEeeeccCCCeEEEE
Q psy2148 1421 KKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLC 1500 (1884)
Q Consensus 1421 ~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~c 1500 (1884)
...+|.|...+. ..+.+|+.++|.|.+. |. .+.+.|+|+|..+.... ........|.|.+++.+|+|.|+|
T Consensus 21 ~~~~P~i~~~p~--~~v~~G~~v~L~C~~~--~~-~~~~~W~k~g~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C 91 (316)
T 3vh8_G 21 GQDKPFLSAWPS--AVVPRGGHVTLRCHYR--HR-FNNFMLYKEDRIHIPIF----HGRIFQESFNMSPVTTAHAGNYTC 91 (316)
T ss_dssp ---CCEEEEESC--SEEETTSCEEEEEEBT--TB-CCSEEEEESSCSSSCHH----HHCCBSSCEEECSCCGGGCEEEEE
T ss_pred CCCCCEeeccCC--CccCCCCCEEEEEEcc--CC-CceEEEEeCCCccceee----cCCcceEEEEECCCCcccCeEEEE
Confidence 356888887776 3588999999999985 66 67999999998765321 111223469999999999999999
Q ss_pred EEEecCc-----ceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccccc
Q psy2148 1501 RATNLYG-----MDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQKVQ 1575 (1884)
Q Consensus 1501 ~a~n~~G-----~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~ 1575 (1884)
.|.|..+ ..+..+.|.|.+.+ .+|.+...+... +.
T Consensus 92 ~a~~~~~~~~~~~~s~~~~l~V~~~~---------------------------------------~~p~~~~~~~~~-v~ 131 (316)
T 3vh8_G 92 RGSHPHSPTGWSAPSNPVVIMVTGNH---------------------------------------RKPSLLAHPGPL-VK 131 (316)
T ss_dssp EEBCSSSSSSBCCCCCCEEEEEECSS---------------------------------------CCCEEEEESCSE-EE
T ss_pred EEEcCCCCcceecCCCcEEEEEecCC---------------------------------------CCCeEEecCCCc-cC
Confidence 9987432 22333555554321 123333322222 34
Q ss_pred cCCceEEEEEEecCCCCeEEEEEcCEEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCceeecCCC
Q psy2148 1576 EGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQPCRAFEQD 1655 (1884)
Q Consensus 1576 ~g~~~~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~ 1655 (1884)
+|+
T Consensus 132 -----------------------------------------------------------------------------~G~ 134 (316)
T 3vh8_G 132 -----------------------------------------------------------------------------SGE 134 (316)
T ss_dssp -----------------------------------------------------------------------------TTC
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 455
Q ss_pred eEEEEEEEeccCCCeEEEEeCCeecCCCCCe-EEEEeCceeEEEEcccccCCCeEEEEEEEeCCce-----EEEEEEEEE
Q psy2148 1656 QARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK-----AKCSANLVV 1729 (1884)
Q Consensus 1656 ~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~-----~~~~~~l~V 1729 (1884)
.++|.|.+. .+.+.+.|+|+|..+...... ..........|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 135 ~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V 213 (316)
T 3vh8_G 135 RVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVV 213 (316)
T ss_dssp CEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEE
T ss_pred eEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEe
Confidence 555555443 233455555555443221100 0111123457999999999999999999998774 245567777
Q ss_pred EecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEee-cCCeEEEEEccCCCC
Q psy2148 1730 EEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE-EDNLFTLLIIEAVVE 1808 (1884)
Q Consensus 1730 ~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~-~~~~~~L~i~~~~~~ 1808 (1884)
.... .+|.+...+.. .+.+|+.++|.|.+. .|.+.+.|+|+|..+.......... ......|.|.+++
T Consensus 214 ~~~~-------~~p~i~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~-- 282 (316)
T 3vh8_G 214 TGPY-------EKPSLSAQPGP-KVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT-- 282 (316)
T ss_dssp ECSS-------CCCEEEEESCS-CCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-----
T ss_pred cCCC-------CCCeEEeCCCC-eecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--
Confidence 7532 46777766543 678999999999997 4778999999998775332211111 2223589999999
Q ss_pred CCEEEEEEEEeCCee-----EEEEEEEEEEec
Q psy2148 1809 DSGAYECVAMNNAGE-----ARCEAELVVQSK 1835 (1884)
Q Consensus 1809 d~G~Y~C~a~N~~G~-----~~~~~~l~V~~~ 1835 (1884)
|+|.|+|.|.|..+. .+..++|.|.+.
T Consensus 283 D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 314 (316)
T 3vh8_G 283 HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGN 314 (316)
T ss_dssp --CEEEEEEEBTTBTTEECCCCCCEEC-----
T ss_pred CCEEEEEEeecCCCchhccCCCCcEEEEEeCC
Confidence 999999999998763 455577777663
No 94
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.91 E-value=9.1e-24 Score=245.76 Aligned_cols=248 Identities=18% Similarity=0.223 Sum_probs=182.2
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCc--EEEEeeCCEEccCCCcEEEEeeCCeEEEEEccC---CCCCCeE--
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSM--TVEWFHNGKALSAGSRIKTINDFGFVILEINDV---YLRDSGL-- 988 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~---~~~D~G~-- 988 (1884)
+|.+.. ...+.+|++++|.|.+.+ ..|.+ .|+|+|+|..+.. .+...++ .|.|..+ +.+|+|.
T Consensus 6 ~p~~~~---~~~v~~G~~v~l~C~~~g-~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g~ 75 (265)
T 2oz4_A 6 PPQLVS---PRVLEVDTQGTVVCSLDG-LFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQR 75 (265)
T ss_dssp CCEEEC---CSEEETTEEEEEEEEEES-CSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEEE
T ss_pred CCcccc---CceEecCCCEEEEEEccC-CCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcce
Confidence 455543 247899999999999984 26666 9999999999865 2333333 3444443 7788885
Q ss_pred EEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCC
Q psy2148 989 YTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPE 1068 (1884)
Q Consensus 989 Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 1068 (1884)
|+|.|.|..|..+..+.|.|...|. |.+. +. ...+.+
T Consensus 76 Y~C~a~n~~~~~~~~~~l~V~~~p~----------------------------------------p~~~--~~-~~~v~~ 112 (265)
T 2oz4_A 76 LTCAVILGNQSQETLQTVTIYSFPA----------------------------------------PNVI--LT-KPEVSE 112 (265)
T ss_dssp EEEEEEETTEEEEEEEEEEEECCCC----------------------------------------CEEE--ES-CSEEET
T ss_pred EEEEEecCCCCcEEEEEEEEeCCCC----------------------------------------ceee--cC-CceecC
Confidence 9999999999999999999975321 2222 12 255778
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCC-eeeE---EEEEE
Q psy2148 1069 AGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKW-GTAM---TKAKV 1144 (1884)
Q Consensus 1069 g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-G~~~---~~~~l 1144 (1884)
|+.+.|.|.+. |.+.|.| +|..+... +....|.|..+..+|+|.|+|.|.|.. |... ..+.|
T Consensus 113 G~~v~l~C~~~----p~~~i~W--~g~~~~~~--------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l 178 (265)
T 2oz4_A 113 GTEVTVKCEAH----PRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL 178 (265)
T ss_dssp TCEEEEEEECC----TTSEEEE--SSCSSSCC--------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEE
T ss_pred CCcEEEEEEcc----CCCEEEE--CCEEccCC--------CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEE
Confidence 99999999984 7889999 88887432 233468899999999999999998644 7665 66777
Q ss_pred EEeeccccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhccccccccc
Q psy2148 1145 ICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELE 1224 (1884)
Q Consensus 1145 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 1224 (1884)
.|..+|.+...
T Consensus 179 ~V~~~p~~~~~--------------------------------------------------------------------- 189 (265)
T 2oz4_A 179 RVLYGPRLDER--------------------------------------------------------------------- 189 (265)
T ss_dssp EEEEEEECCGG---------------------------------------------------------------------
T ss_pred EEEeCCccccc---------------------------------------------------------------------
Confidence 77655432100
Q ss_pred cccccccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEeccc
Q psy2148 1225 KHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLST 1304 (1884)
Q Consensus 1225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~ 1304 (1884)
..+....+.+|+.++|.|.+.|. |.+.+.|+|++
T Consensus 190 --------------------------------------------~~p~~~~v~~g~~~~l~C~~~g~--P~p~i~W~~~~ 223 (265)
T 2oz4_A 190 --------------------------------------------DCPGNWTWPENSQQTPMCQAWGN--PLPELKCLKDG 223 (265)
T ss_dssp --------------------------------------------GSCSEEEEETTCEECCCCCCEEE--SCCEEEEEETT
T ss_pred --------------------------------------------cCCCccEEcCCCeEEEEeECccC--CCCeEEEEECC
Confidence 01235678899999999998864 77899999998
Q ss_pred ccccccccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEee
Q psy2148 1305 AFFFPFINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKK 1375 (1884)
Q Consensus 1305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 1375 (1884)
..+... + .+..++.+|+|.|+|.|.|..|....++.|.|+.
T Consensus 224 ~~~~~~--------------------------g----~~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 224 TFPLPI--------------------------G----ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp TEECCT--------------------------T----SCEECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cccCCC--------------------------C----cEEEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 722111 1 1224788999999999999999999999999864
No 95
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=248.82 Aligned_cols=275 Identities=14% Similarity=0.119 Sum_probs=180.7
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCC-eEEEEEccCCCCCCeEEEEEEEc
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFG-FVILEINDVYLRDSGLYTCKATN 995 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N 995 (1884)
|.|.....++.+.+|++++|.|.+. +. |+|+|+|..+. .+.....++. ..+|.|.+++.+|+|.|+|.|.|
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~--~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 72 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGS--AP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHND 72 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEES--SC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC
T ss_pred CeecCCCCeEEEeCCCcEEEEEecc--ce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcc
Confidence 4455556678899999999999997 32 99999999883 2333333332 36899999999999999999999
Q ss_pred CCee---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 996 KHGE---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 996 ~~G~---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
..|. .+..+.|.|.++..+.. +. .+. ...+.+.+|+.+
T Consensus 73 ~~g~~~~~~~~~~v~v~~p~~~~~-~~---------------------------------~~~-----~~~~~v~~G~~v 113 (289)
T 3mjg_X 73 SRGLETDERKRLYIFVPDPTVGFL-PN---------------------------------DAE-----ELFIFLTEITEI 113 (289)
T ss_dssp ------CCCEEEEEECCCTTCCBC-CC---------------------------------CHH-----HHEEEESSCCCE
T ss_pred cCCCCcCcEEeEEEEEECCCcCcc-cC---------------------------------CCC-----cceEEeecCCeE
Confidence 9887 33444555442211100 00 000 001457789999
Q ss_pred EEEEEEeeCCCCCcEEEEEECC--EeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEE-EEEEEeec
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNG--RPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK-AKVICKAK 1149 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~--~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~-~~l~v~~~ 1149 (1884)
.|.|.+. .|.+.++|++++ ..+.. . .....+ .+ ...|+|.|+|.|.|..|...+. ..|.|...
T Consensus 114 ~l~C~~~---~p~~~v~w~~~~~~~~~~~--~--~~~~~~--~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~ 179 (289)
T 3mjg_X 114 TIPCRVT---DPQLVVTLHEKKGDVALPV--P--YDHQRG--FS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV 179 (289)
T ss_dssp EECCCBS---CTTSCEEEEESSCCSCCCC--C--EETTTE--EE-----ECCCSSEEEEEEEETTEEEECCCEEEEECCC
T ss_pred EEEeEcC---CCCceEEEEeCCCCCccce--e--ecCCcC--ee-----eeccCcEEEEEEEeCCceeeeeeEEEEecCC
Confidence 9999995 456778888865 33321 1 111111 11 3579999999999887765443 33433210
Q ss_pred cccccccccCCcccHHHHHhhhccCCCCccccCCCCCCCCccccchhcccccccccccchhhhhhhcccccccccccccc
Q psy2148 1150 HDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIV 1229 (1884)
Q Consensus 1150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 1229 (1884)
T Consensus 180 -------------------------------------------------------------------------------- 179 (289)
T 3mjg_X 180 -------------------------------------------------------------------------------- 179 (289)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhHHHHHhhhccCCCccccccCCCCCCCeeEeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccc
Q psy2148 1230 TESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFP 1309 (1884)
Q Consensus 1230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~ 1309 (1884)
.+|.|...+....+.+|+.++|.|.+.+ .|.+.+.|++++.....
T Consensus 180 ---------------------------------~~p~i~~~~~~~~v~~G~~v~L~C~~~g--~p~p~v~W~~~~~~~~~ 224 (289)
T 3mjg_X 180 ---------------------------------SSINVSVNAVQTVVRQGENITLMCIVIG--NEVVNFEWTYPRKESGR 224 (289)
T ss_dssp ---------------------------------CCCCCEEEESCSEEETTSCEEEEEEEES--CSSBEEEEECTTSSSSC
T ss_pred ---------------------------------CCCCcEEeCCcceeEcCCCEEEEEEECC--CCCcceEEEcCCccCCC
Confidence 2345555556678999999999999985 58889999988764432
Q ss_pred cccccceEEEeeccceeeeeeeeeeeeceEEEEEeeecccCceEEEEEEEccccceeeeEEEEEeecCce
Q psy2148 1310 FINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATISCKKIPTI 1379 (1884)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 1379 (1884)
... ................|.|.++..+|+|.|+|.|.|..|....++.|+|...|..
T Consensus 225 ~~~------------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~ 282 (289)
T 3mjg_X 225 LVE------------PVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282 (289)
T ss_dssp CCC------------CEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC--
T ss_pred ccc------------ccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecC
Confidence 211 0000000001234568999999999999999999999999999999999877653
No 96
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.91 E-value=2.1e-23 Score=230.06 Aligned_cols=201 Identities=18% Similarity=0.287 Sum_probs=150.5
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeC--CeEEEEEccCCCCCCeEEEEEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF--GFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
+|.|...+ +..+.+|+.+.|.|.+.+ +.|.|.|+|+|||++|..+.++.+..++ +.+.|.|.+++.+|+|.|+|.|
T Consensus 3 ~p~~~~~~-~~~v~eg~~v~l~c~~~~-~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a 80 (207)
T 3rbs_A 3 DPFTKSEL-AVEILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 80 (207)
T ss_dssp ---CCEEE-EEEECGGGCEEEEEECSC-CCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEE
T ss_pred CCeeecCC-ceEEEeCCeEEEEEEEec-CCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEE
Confidence 57777655 688999999999999973 5799999999999999998888877654 7778999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
.| |..+..+.+.+...... .... ...++... +. ...+|.|...+ ...+.+|+.+.
T Consensus 81 ~N--g~a~~~~~~~~~~~~~~-------~~~~--~~~~~~~~---~~---------~~~~P~~~~~~--~~~v~~g~~v~ 135 (207)
T 3rbs_A 81 QD--GKATNHSTVVLVGDVFK-------KLQK--EAEFQRQE---WI---------RKQGPHFVEYL--SWEVTGECNVL 135 (207)
T ss_dssp EE--TTEEEEEEEEECTHHHH-------HHHH--HHHHHHHH---HH---------HHTSSEEEEEE--EEEEETTTEEE
T ss_pred EC--CCeEEEEEEEEEccchh-------hhcc--cccccccc---cc---------cCCCCceEecC--CcEEcCCCcEE
Confidence 99 55555555443211000 0000 00000000 00 00378887766 26788999999
Q ss_pred EEEEEeeCCC-CCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1074 FDCRLEPKSD-PTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1074 l~C~v~~~~~-p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
|.|.+. |. |.|.|.|+|||++|..+.++ ....+...|.|.++..+|+|.|+|.|.|.+|.+++++.|.++
T Consensus 136 l~C~v~--g~~P~p~i~W~k~g~~l~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 136 LKCKVA--NIKKETHIVWYKDEREISVDEKH--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp EEEEEE--SCCTTCEEEEEETTEEECCCCCC--CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred EEEEEe--CCCCCCEEEEEECCEECCCCCce--EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 999997 77 89999999999999876654 234556689999999999999999999999999999988754
No 97
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.91 E-value=6.4e-23 Score=226.69 Aligned_cols=193 Identities=24% Similarity=0.349 Sum_probs=166.1
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCC-CCeEEEEe-CceeEEEEcccccCCCeEEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTF-STKSILIMRQVFMEDSGVFAVIA 1714 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~-~~~~~L~i~~v~~~DsG~Y~C~a 1714 (1884)
..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+... .++.+... +....|.|.++..+|+|.|+|.+
T Consensus 2 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (197)
T 2j8h_A 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA 81 (197)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred CCCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEE
Confidence 35799999999999999999999999999999999999999988754 34555433 44458999999999999999999
Q ss_pred EeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeec
Q psy2148 1715 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794 (1884)
Q Consensus 1715 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~ 1794 (1884)
.|..|.....+.|.|..++.. ..|.+...+....+.+|+.++|.|.+.|.|.|.|.|+|++..+..+.++.+...
T Consensus 82 ~n~~g~~~~~~~l~V~~~p~~-----~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~ 156 (197)
T 2j8h_A 82 TNQGGSVSGTASLEVEVPAKI-----HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156 (197)
T ss_dssp EETTEEEEEEEEEEEEEEEEE-----CCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC
T ss_pred EECCCceeEEEEEEEcCCCcC-----CCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc
Confidence 999999999999999864432 223333334567788999999999999999999999999999998888888877
Q ss_pred CCeEEEEEcc-CCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1795 DNLFTLLIIE-AVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1795 ~~~~~L~i~~-~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
+....|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 157 ~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d 197 (197)
T 2j8h_A 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197 (197)
T ss_dssp SSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence 7788999999 999999999999999999999999999874
No 98
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.90 E-value=7.4e-23 Score=225.62 Aligned_cols=189 Identities=29% Similarity=0.466 Sum_probs=163.0
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCC--cEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS--RIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
.||.|...+.+..+.+|++++|.|.+. +.|.+.|+|+|+|..+.... ++.+...++.+.|.|.+++.+|+|.|+|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 81 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK 81 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEE--EESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEE--ecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence 578999999999999999999999998 66778999999999997664 66666667778999999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 993 ATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|.|..|.....+.|.|.... .+|.+..... ...+.+|+.+
T Consensus 82 ~~n~~~~~~~~~~l~v~~~~---------------------------------------~~p~~~~~~~-~~~~~~g~~~ 121 (194)
T 2a38_A 82 ATNGSGQATSTAELLVKAET---------------------------------------APPNFVQRLQ-SMTVRQGSQV 121 (194)
T ss_dssp EEETTEEEEEEEEEEEECCC---------------------------------------EEEEEEECCC-CEEECTTEEE
T ss_pred EEcCCceEeEEEEEEEccCC---------------------------------------CCCEEEeCCc-cEEEcCCCEE
Confidence 99999999999999987421 2333433333 3667899999
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
.|.|.+. +.|.+.+.|+|+|..+..+.++.+..++....|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 122 ~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 122 RLQVRVT--GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp EEEEEEE--EESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEE--EecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 9999997 778889999999999998888888778888899999999999999999999999999999988874
No 99
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.90 E-value=1.4e-22 Score=224.23 Aligned_cols=189 Identities=19% Similarity=0.309 Sum_probs=169.5
Q ss_pred CCCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEE
Q psy2148 1636 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 1715 (1884)
Q Consensus 1636 ~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~ 1715 (1884)
+..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+....++.+...+...+|.|.++..+|+|.|+|.+.
T Consensus 4 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 83 (197)
T 3lcy_A 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 83 (197)
T ss_dssp CCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEE
T ss_pred cCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEE
Confidence 45678899999999999999999999999999999999999999988888888877777899999999999999999999
Q ss_pred eCCceEEEEEEEEEEecccCCCCCCCCCeEEe---ccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEe
Q psy2148 1716 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT---TISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTL 1792 (1884)
Q Consensus 1716 n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~---~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~ 1792 (1884)
|..|.....+.|.|... |.+.. .+....+..|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+.
T Consensus 84 n~~~~~~~~~~l~v~~~----------p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~ 153 (197)
T 3lcy_A 84 NEVGEVETSSKLLLQAT----------PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIE 153 (197)
T ss_dssp CSSCEEEEEEEEEEEEE----------EEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEE
T ss_pred CCCCceeEEEEEEEEcC----------CCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEE
Confidence 99999999999999853 33321 234567789999999999999999999999999999988898888
Q ss_pred ecCCeEEEEEccCCC-CCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1793 EEDNLFTLLIIEAVV-EDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1793 ~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
..+....|.|.++.. +|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 154 ~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 154 NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp ECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred EcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 877778999999995 899999999999999999999999986
No 100
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.90 E-value=8.1e-23 Score=225.29 Aligned_cols=189 Identities=21% Similarity=0.311 Sum_probs=149.6
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEe-ccCCCeEEEEeCCeecCCCCCeEEEEeC--ceeEEEEcccccCCCeEEEEEEE
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSPDFQIHTFS--TKSILIMRQVFMEDSGVFAVIAE 1715 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~DsG~Y~C~a~ 1715 (1884)
+|.|.... +..+.+|+.++|.|.+. +.|.|.|+|+|||+++..+.++++.... ...+|.|.++..+|+|.|+|.|.
T Consensus 3 ~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~ 81 (207)
T 3rbs_A 3 DPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ 81 (207)
T ss_dssp ---CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred CCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence 46666655 57889999999999996 4799999999999999888888877654 44579999999999999999999
Q ss_pred eCCceEEEEEEEEEEeccc--------CCC---CCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCcEEEEEeCCEec
Q psy2148 1716 NRGGKAKCSANLVVEEKRQ--------GGR---GGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWLKNGKKI 1783 (1884)
Q Consensus 1716 n~~g~~~~~~~l~V~~~~~--------~~~---~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~k~~~~l 1783 (1884)
| |.......+.+....- ... ....+|.|...+ ...+.+|+.++|.|.+.|. |.|.|+|+|||.+|
T Consensus 82 N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l 158 (207)
T 3rbs_A 82 D--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREI 158 (207)
T ss_dssp E--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred C--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEEC
Confidence 9 5555555543321000 000 000278888766 5788999999999999998 99999999999999
Q ss_pred CCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1784 IPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1784 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
..+.++. ...+..+|.|.++..+|+|.|+|.|.|.+|.+.+++.|+++
T Consensus 159 ~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 159 SVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp CCCCCCC--CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred CCCCceE--cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 8876653 33445689999999999999999999999999999998764
No 101
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.90 E-value=2.2e-22 Score=222.42 Aligned_cols=191 Identities=21% Similarity=0.335 Sum_probs=162.1
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCC-CcEEEEe-eCCeEEEEEccCCCCCCeEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAG-SRIKTIN-DFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~-~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
.||.|...+.++.+.+|+.+.|.|.+. +.|.+.++|+|+|..+... .++.+.. .++.+.|.|.+++.+|+|.|+|.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEE--CSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEe--ecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence 689999999999999999999999998 7788899999999999764 4666543 45667899999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 993 ATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|.|..|..+..+.|.|..+|.+... .+.... ....+.+|+.+
T Consensus 81 ~~n~~g~~~~~~~l~V~~~p~~~~~-------------------------------------~~~~~~-~~~~~~~g~~~ 122 (197)
T 2j8h_A 81 ATNQGGSVSGTASLEVEVPAKIHLP-------------------------------------KTLEGM-GAVHALRGEVV 122 (197)
T ss_dssp EEETTEEEEEEEEEEEEEEEEECCS-------------------------------------SCBTTB-EEEEEETTCCC
T ss_pred EEECCCceeEEEEEEEcCCCcCCCC-------------------------------------cccccc-CeEEEeCCCEE
Confidence 9999999999999999876654221 111111 12456789999
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcc-cCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDY-VYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
.|.|.+. +.|.+.|.|+|+|..+..+.++.+........|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 123 ~l~C~~~--g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 123 SIKIPFS--GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp EEEEEEE--EESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEE--ecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 9999997 7788999999999999988888777777778999999 99999999999999999999999999875
No 102
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.90 E-value=4.8e-22 Score=222.20 Aligned_cols=195 Identities=24% Similarity=0.308 Sum_probs=163.1
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEe-CceeEEEEccc-ccCCCeEEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTF-STKSILIMRQV-FMEDSGVFAVIA 1714 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v-~~~DsG~Y~C~a 1714 (1884)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|+|+|..+.......+... +....|.|.++ ..+|+|.|+|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a 83 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence 4678999999999999999999999999999999999999998876533222222 34578999999 599999999999
Q ss_pred EeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCC---CCeEE
Q psy2148 1715 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPD---IRYKT 1791 (1884)
Q Consensus 1715 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~---~~~~~ 1791 (1884)
.|..|.....+.|.|...+..+ ...|.+...+....+..|+.++|.|.+.|.|.|.|+|+|+|..+... .++..
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~ 160 (212)
T 2yd6_A 84 SNNVGEISVSTRLTVLREDQIP---RGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQ 160 (212)
T ss_dssp EETTEEEEEEEEEEEECGGGCC---TTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEE
T ss_pred EcCCCcEEEEEEEEEeccCccC---CCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEE
Confidence 9999999999999998654311 13488888888889999999999999999999999999999999764 46666
Q ss_pred eecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEE-EEEEEEEe
Q psy2148 1792 LEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARC-EAELVVQS 1834 (1884)
Q Consensus 1792 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~ 1834 (1884)
...+....|.|.++..+|+|.|+|.|.|..|.... .+.|.|..
T Consensus 161 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~ 204 (212)
T 2yd6_A 161 LRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG 204 (212)
T ss_dssp EEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred EecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEe
Confidence 66666789999999999999999999999998764 47888875
No 103
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.90 E-value=5e-22 Score=222.15 Aligned_cols=193 Identities=27% Similarity=0.409 Sum_probs=164.1
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecC-CCCCeEEEEeC-ceeEEEEccccc-CCCeEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPIT-SSPDFQIHTFS-TKSILIMRQVFM-EDSGVFAVI 1713 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~-~~~~~~~~~~~-~~~~L~i~~v~~-~DsG~Y~C~ 1713 (1884)
..||.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|+++|..+. ...++.+.... +...|.|.++.. +|+|.|+|.
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~ 83 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV 83 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence 468999999999999999999999999999999999999999887 45566665543 347899999999 999999999
Q ss_pred EEeCCce-EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCC-CCeEE
Q psy2148 1714 AENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPD-IRYKT 1791 (1884)
Q Consensus 1714 a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~-~~~~~ 1791 (1884)
|.|..|. ....+.|.|...+..+ ..+|.|...+....+..|+.++|.|.+.|.|.|.|.|+|++..+... .++.+
T Consensus 84 ~~n~~g~~~~~~~~l~V~~~~~~~---~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~ 160 (212)
T 2yd1_A 84 AENGVGDAVSADATLTIYEGDKTP---AGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL 160 (212)
T ss_dssp EECSSSCEEEEEEEEEEECTTCSC---TTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEE
T ss_pred EEeCCCCeEEeeEEEEEecccCCC---CCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEc
Confidence 9999998 7888999998643311 12488988888899999999999999999999999999999999764 44433
Q ss_pred eecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEE-EEEEEEecC
Q psy2148 1792 LEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCE-AELVVQSKK 1836 (1884)
Q Consensus 1792 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~-~~l~V~~~~ 1836 (1884)
.++ .|.|.++..+|+|.|+|.|.|..|..... +.|.|.+..
T Consensus 161 -~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~ 202 (212)
T 2yd1_A 161 -KDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202 (212)
T ss_dssp -ETT---EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred -cCC---eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence 333 89999999999999999999999999875 899998753
No 104
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.89 E-value=3.3e-22 Score=221.07 Aligned_cols=191 Identities=22% Similarity=0.344 Sum_probs=165.9
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
..+|.|...+.++.+.+|+.+.|.|.+. +.|.+.+.|+|+|..+..+.++.+..+++.++|.|.+++.+|+|.|+|.|
T Consensus 5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 82 (197)
T 3lcy_A 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIV--GRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA 82 (197)
T ss_dssp CEEEEEEECCCCEEEETTSEEEEEEEEE--EESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred CCCCcccccCCceEEeCCCcEEEEEEEe--cCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence 4689999999999999999999999998 56788999999999999999998888888889999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
.|..|.....+.|.|...|.+.... .......+.+|+.+.
T Consensus 83 ~n~~~~~~~~~~l~v~~~p~~~~~~----------------------------------------~~~~~~~~~~g~~~~ 122 (197)
T 3lcy_A 83 TNEVGEVETSSKLLLQATPQFHPGY----------------------------------------PLKEKYYGAVGSTLR 122 (197)
T ss_dssp ECSSCEEEEEEEEEEEEEEEECTTS----------------------------------------CCCSEEEEETTSCEE
T ss_pred ECCCCceeEEEEEEEEcCCCCCCCc----------------------------------------cCCcceeecCCCeEE
Confidence 9999999999999998765432110 011124566899999
Q ss_pred EEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCc-CCcEEEEEEEEcCCeeeEEEEEEEEee
Q psy2148 1074 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYA-RDSGEYICRATNKWGTAMTKAKVICKA 1148 (1884)
Q Consensus 1074 l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~G~~~~~~~l~v~~ 1148 (1884)
|.|.+. +.|.+.+.|+++|..+..+.++.+........|.|.++.. +|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 123 l~C~~~--~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 123 LHVMYI--GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EEEEEE--EESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred EEEEEe--eeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 999997 7888899999999999988888877777778999999985 899999999999999999999998874
No 105
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.89 E-value=1.3e-21 Score=214.38 Aligned_cols=179 Identities=21% Similarity=0.242 Sum_probs=156.2
Q ss_pred CCCeeeecCCceeecC-CCeEEEEEEEeccCC--CeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEE
Q psy2148 1638 KPPVFTKKIQPCRAFE-QDQARFEVEFDGDPL--PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 1714 (1884)
Q Consensus 1638 ~~p~~~~~~~~~~v~~-G~~~~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a 1714 (1884)
.||.+.... ...+.+ |+.+.|.|.+.|.|. +.+.|+|+|..+....... .+..|.|.++..+|+|.|+|.|
T Consensus 2 ~~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~ 75 (190)
T 2wv3_A 2 NEPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVY 75 (190)
T ss_dssp -CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEE
Confidence 367777644 455556 999999999999987 8999999999887654322 4578999999999999999999
Q ss_pred EeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEe--CCEecC---CCCCe
Q psy2148 1715 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK--NGKKII---PDIRY 1789 (1884)
Q Consensus 1715 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k--~~~~l~---~~~~~ 1789 (1884)
.|. |.....+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+| ++..+. .+.++
T Consensus 76 ~n~-~~~~~~~~l~V~----------~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~ 144 (190)
T 2wv3_A 76 HFV-SAPKANATIEVK----------AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRF 144 (190)
T ss_dssp EET-TEEEEEEEEEEE----------CCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCE
T ss_pred EeC-CcccccEEEEEe----------cCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeE
Confidence 999 999999999998 58889988888899999999999999999999999999 888764 55688
Q ss_pred EEeecCCeEEEEEccCC-CCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1790 KTLEEDNLFTLLIIEAV-VEDSGAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1790 ~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
.+..++....|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus 145 ~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 145 FIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 88877777899999999 799999999999999999999999886
No 106
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.89 E-value=3.8e-23 Score=226.13 Aligned_cols=171 Identities=14% Similarity=0.106 Sum_probs=140.5
Q ss_pred CceeecCCCeEEEEEE---EeccCCCeEEEEeCCeecC-----------------CCCCeEEEEeCceeEEEEcccccCC
Q psy2148 1647 QPCRAFEQDQARFEVE---FDGDPLPTIKWFREDFPIT-----------------SSPDFQIHTFSTKSILIMRQVFMED 1706 (1884)
Q Consensus 1647 ~~~~v~~G~~~~l~C~---~~g~p~~~i~W~~~~~~~~-----------------~~~~~~~~~~~~~~~L~i~~v~~~D 1706 (1884)
+.+++..|+.++|.|. +.|.|.+.|+|+|+|..+. ...++.+....+...|.|.+++.+|
T Consensus 1 q~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 80 (203)
T 4fa8_A 1 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 80 (203)
T ss_dssp -CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence 3568899999999995 5688999999999874321 1234556666778899999999999
Q ss_pred CeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecC--
Q psy2148 1707 SGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKII-- 1784 (1884)
Q Consensus 1707 sG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~-- 1784 (1884)
+|.|.|.|.|..|.....+.|.|. .||.+...+....+.+|++++|.|.+.|.|.|.|+|++++..+.
T Consensus 81 ~G~Y~C~a~n~~g~~~~~~~l~V~----------~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~ 150 (203)
T 4fa8_A 81 DGNYLCRMKLGETEVTKQEHLSVV----------KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAP 150 (203)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEE----------EEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-------
T ss_pred CeEEEEEEEcCCCcEEEEEEEEec----------CCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCc
Confidence 999999999999999999999998 47888888888889999999999999999999999998876543
Q ss_pred --CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEE
Q psy2148 1785 --PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCE 1827 (1884)
Q Consensus 1785 --~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~ 1827 (1884)
.+.++.+..++....|.|.++..+|+|.|+|.|+|.+|++...
T Consensus 151 ~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 151 TAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp -----CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred ccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 3457777777777778889999999999999999999998753
No 107
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.89 E-value=8.7e-23 Score=245.16 Aligned_cols=282 Identities=12% Similarity=0.140 Sum_probs=175.9
Q ss_pred CCCCeEEEccCCccccccc-cceEEEEEEeeCCC-C-CCeEEEeecCeecCCCCCc-eeeeeCce----EEEEEeeeccC
Q psy2148 1422 KQPPRFVTQIKTQDQLVEM-QSTKFECQLAPVGD-P-NMKVEWFLNGKPLPHKNRF-NPIYDFGY----VAMNFGWVYPE 1493 (1884)
Q Consensus 1422 ~~pP~~~~~~~~~~~v~~g-~~~~l~C~~~~~g~-p-~~~i~W~~~~~~l~~~~~~-~~~~~~~~----~~L~i~~~~~~ 1493 (1884)
..||.+...+.....+..| +.+.|.|.+. |. | .+.|+|+|||..+..+... .....++. ..|.|.....+
T Consensus 5 ~~~P~v~~~~~~~~~~~~~~~~v~L~C~~~--g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~ 82 (323)
T 2wqr_A 5 FTPPTVKILQSSCDGGGHFPPTIQLLCLVS--GYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWL 82 (323)
T ss_dssp CCCCCCEEEEECCCTTSCCCSEEEEEEEEE--EECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHH
T ss_pred CCCCEEEEeCCChHHhccCCCcEEEEEEEe--CeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcC
Confidence 4577765544433333332 6999999997 64 5 4799999999998754321 11222332 35778888888
Q ss_pred CCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCCcccc
Q psy2148 1494 DSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQPEAQK 1573 (1884)
Q Consensus 1494 d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 1573 (1884)
|+|.|+|.|.|..|.....+.+.+.. ....++.++..+....
T Consensus 83 d~g~Y~C~a~n~~~~~~~~~~~~~~~--------------------------------------~~~~p~v~~~~p~~~~ 124 (323)
T 2wqr_A 83 SDRTYTCQVTYQGHTFEDSTKKCADS--------------------------------------NPRGVSAYLSRPSPFD 124 (323)
T ss_dssp TTCCEEEEEEETTEEEEEEECCCCCS--------------------------------------SGGGCEEEECCCCHHH
T ss_pred CCCcEEEEEEeCCCCcceeeecCCCC--------------------------------------CCCCCEEEEcCCCHHH
Confidence 99999999999887544332211100 0112334455555556
Q ss_pred cccCCceEEEEEEecC-CCC---eEEEEEcC-EEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCeeeecCCc
Q psy2148 1574 VQEGEPARFCTRVTGY-PRP---RVMWLING-HTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVFTKKIQP 1648 (1884)
Q Consensus 1574 v~~g~~~~l~C~~~g~-p~~---~v~W~~~g-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1648 (1884)
+.+|+++.|.|.+.|. |.+ .|+|++++ ..+..
T Consensus 125 v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~------------------------------------------- 161 (323)
T 2wqr_A 125 LFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH------------------------------------------- 161 (323)
T ss_dssp HHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCC-------------------------------------------
T ss_pred hccCCeEEEEEEEeccCCCCCceEEEEEECCCccccc-------------------------------------------
Confidence 7778888888887775 455 77777753 22100
Q ss_pred eeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEE
Q psy2148 1649 CRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLV 1728 (1884)
Q Consensus 1649 ~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~ 1728 (1884)
+. .+. . ...+..+. ..+.|.|.++..+|+|.|+|.|.|..+.... .+.
T Consensus 162 -----~~--------------~~~-~-----~~~~g~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~ 209 (323)
T 2wqr_A 162 -----ST--------------RKE-E-----KQRNGTLT-----VTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRS 209 (323)
T ss_dssp -----CC--------------CEE-E-----ECTTSCEE-----EEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEE
T ss_pred -----cc--------------CCC-c-----cCCCCCEE-----EEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeE
Confidence 00 000 0 00001111 2346999999999999999999998654322 344
Q ss_pred EEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EEEEEeCCEecCCCCCeEE----ee-cC---CeE
Q psy2148 1729 VEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLKNGKKIIPDIRYKT----LE-ED---NLF 1798 (1884)
Q Consensus 1729 V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~k~~~~l~~~~~~~~----~~-~~---~~~ 1798 (1884)
|.... ....+|.+...+.......|+.++|.|.+.| .|.+ .|+|+|||..|..+. +.. .. ++ ...
T Consensus 210 v~~~~----~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~s 284 (323)
T 2wqr_A 210 TTKTS----GPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGFFVFS 284 (323)
T ss_dssp ECCCC----SCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSEEEEE
T ss_pred EEccC----CCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcEEEEE
Confidence 42110 0014777765544433344999999999998 5543 899999999986532 211 11 11 124
Q ss_pred EEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1799 TLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1799 ~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
.|.|..+..+|+|.|+|.|.|..+.
T Consensus 285 ~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 285 RLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEEEHHHHHHCCCEEEEEECTTST
T ss_pred EEEEChHHccCCCEEEEEEEeCCCC
Confidence 7999999999999999999999876
No 108
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.88 E-value=1.7e-21 Score=217.67 Aligned_cols=197 Identities=28% Similarity=0.396 Sum_probs=156.5
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEe-eCCeEEEEEccC-CCCCCeEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN-DFGFVILEINDV-YLRDSGLYTC 991 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~-~~~~~~L~I~~~-~~~D~G~Y~C 991 (1884)
..||.|...+.+..+.+|+.+.|.|.+. +.|.+.|+|+|+|..+..+....... .+....|.|.++ +.+|+|.|+|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~--g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C 81 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQAT--GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC 81 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEE--EESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEe--eCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence 3689999999999999999999999998 66888999999999997765433332 334668999999 5999999999
Q ss_pred EEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCc
Q psy2148 992 KATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGK 1071 (1884)
Q Consensus 992 ~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~ 1071 (1884)
.|.|..|..+..+.|.|...+..+ +..|.+...... ..+.+|+.
T Consensus 82 ~a~n~~g~~~~~~~l~V~~~~~~~-----------------------------------~~~p~~~~~~~~-~~~~~g~~ 125 (212)
T 2yd6_A 82 VASNNVGEISVSTRLTVLREDQIP-----------------------------------RGFPTIDMGPQL-KVVERTRT 125 (212)
T ss_dssp EEEETTEEEEEEEEEEEECGGGCC-----------------------------------TTCCEEEECCCC-EEEETTSC
T ss_pred EEEcCCCcEEEEEEEEEeccCccC-----------------------------------CCcceeecCCcc-eeEecCCC
Confidence 999999999999999998643211 123555544333 56778999
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEeccCC---CceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEE-EEEEEe
Q psy2148 1072 VHFDCRLEPKSDPTMRIDWFFNGRPFATG---SRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK-AKVICK 1147 (1884)
Q Consensus 1072 ~~l~C~v~~~~~p~~~v~W~k~~~~l~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~-~~l~v~ 1147 (1884)
+.|.|.+. |.|.+.|.|+|+|..+..+ .++..........|.|.++..+|+|.|+|.|.|..|...++ +.|.|.
T Consensus 126 v~l~C~~~--g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~ 203 (212)
T 2yd6_A 126 ATMLCAAS--GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203 (212)
T ss_dssp EEEEEEEE--CSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred EEEEEEec--CCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence 99999997 8899999999999998764 45555555667899999999999999999999999988654 777776
Q ss_pred ecc
Q psy2148 1148 AKH 1150 (1884)
Q Consensus 1148 ~~~ 1150 (1884)
..+
T Consensus 204 ~~~ 206 (212)
T 2yd6_A 204 GTK 206 (212)
T ss_dssp C--
T ss_pred ecc
Confidence 543
No 109
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.88 E-value=1.7e-22 Score=242.71 Aligned_cols=281 Identities=15% Similarity=0.214 Sum_probs=174.0
Q ss_pred CCCeeeecCCCccccCC-CCcEEEEEEEeecCCC-CCeEEEeeCCccCCCCCCe-EEEeeCCE----EEEEEcccCcCCC
Q psy2148 705 QAPVFTVPLSNIDDLRE-GENAHFEARLTPTDDP-KLKVEWFWNGKPMKTGSRF-RTFCDFGF----VILEISPVYPEDC 777 (1884)
Q Consensus 705 ~~p~~~~~~~~~~~v~~-G~~~~l~C~~~~~g~p-~~~v~W~k~g~~l~~~~~~-~~~~~~~~----~~L~i~~~~~~d~ 777 (1884)
.+|.+.+..+....+.. |+.+.|.|.+.+. .| .+.|+|+|||..|..+... ....+++. ..|.|.+...+|+
T Consensus 6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~-~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~ 84 (323)
T 2wqr_A 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGY-TPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSD 84 (323)
T ss_dssp CCCCCEEEEECCCTTSCCCSEEEEEEEEEEE-CCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTT
T ss_pred CCCEEEEeCCChHHhccCCCcEEEEEEEeCe-ECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCC
Confidence 34555543333223333 3799999999863 34 5799999999998754321 11112222 3577887777888
Q ss_pred eEEEEEEEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEecc
Q psy2148 778 GQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQGK 857 (1884)
Q Consensus 778 G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~~ 857 (1884)
|.|+|.|.|..|.....+.+.+..
T Consensus 85 g~Y~C~a~n~~~~~~~~~~~~~~~-------------------------------------------------------- 108 (323)
T 2wqr_A 85 RTYTCQVTYQGHTFEDSTKKCADS-------------------------------------------------------- 108 (323)
T ss_dssp CCEEEEEEETTEEEEEEECCCCCS--------------------------------------------------------
T ss_pred CcEEEEEEeCCCCcceeeecCCCC--------------------------------------------------------
Confidence 999999988776543322100000
Q ss_pred cceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEEE
Q psy2148 858 RSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHFE 937 (1884)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~ 937 (1884)
....++.++..+....+.+|++++|.
T Consensus 109 ------------------------------------------------------~~~~p~v~~~~p~~~~v~~G~~v~L~ 134 (323)
T 2wqr_A 109 ------------------------------------------------------NPRGVSAYLSRPSPFDLFIRKSPTIT 134 (323)
T ss_dssp ------------------------------------------------------SGGGCEEEECCCCHHHHHTSSCCEEE
T ss_pred ------------------------------------------------------CCCCCEEEEcCCCHHHhccCCeEEEE
Confidence 00012233344555678899999999
Q ss_pred EEEeeCCCCCc---EEEEeeCC-EEccCCCcEEEEeeC----CeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEE
Q psy2148 938 CRLTPTNDPSM---TVEWFHNG-KALSAGSRIKTINDF----GFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009 (1884)
Q Consensus 938 C~v~~~~~P~~---~v~W~~~g-~~i~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 1009 (1884)
|.+.+ ..|.+ .|+|+|++ ..+............ ....|.|.+++.+|+|.|+|.|.|..+... ..+.|.
T Consensus 135 C~~~g-~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~--~~~~v~ 211 (323)
T 2wqr_A 135 CLVVD-LAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRA--LMRSTT 211 (323)
T ss_dssp EEEEE-ECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC--EEEEEC
T ss_pred EEEec-cCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCC--eeeEEE
Confidence 99985 34555 99999964 555433322221111 134799999999999999999999875432 234442
Q ss_pred eecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCC-CcEE
Q psy2148 1010 GRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDP-TMRI 1088 (1884)
Q Consensus 1010 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p-~~~v 1088 (1884)
.... ...+|.+.........+ .|+.++|.|.+.+. .| .+.|
T Consensus 212 ~~~~------------------------------------~~~~P~v~~~~~~~~~~-~g~~~~l~C~~~g~-~p~~~~v 253 (323)
T 2wqr_A 212 KTSG------------------------------------PRAAPEVYAFATPEWPG-SRDKRTLACLIQNF-MPEDISV 253 (323)
T ss_dssp CCCS------------------------------------CCBCCEEEEEECCCCTT-CTTEEEEEEEEEEE-BSSCCEE
T ss_pred ccCC------------------------------------CCCCCEEEEeCCChHHh-cCCcEEEEEEeeee-eCCCcEE
Confidence 1100 01345444322221222 39999999999842 34 3489
Q ss_pred EEEECCEeccCCCceE---EEeeCc----EEEEEEcccCcCCcEEEEEEEEcCCee
Q psy2148 1089 DWFFNGRPFATGSRVK---TVYDFG----FISLDMDYVYARDSGEYICRATNKWGT 1137 (1884)
Q Consensus 1089 ~W~k~~~~l~~~~~~~---~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~G~ 1137 (1884)
.|+|||+.|..+.... ....++ ...|.|..+..+|+|.|+|.|.|..+.
T Consensus 254 ~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 254 QWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred EEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 9999999987542111 011122 346999999999999999999999876
No 110
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.88 E-value=2.2e-21 Score=216.92 Aligned_cols=193 Identities=26% Similarity=0.436 Sum_probs=157.6
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEcc-CCCcEEEEee-CCeEEEEEccCCC-CCCeEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALS-AGSRIKTIND-FGFVILEINDVYL-RDSGLYTC 991 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~-~~~~~~~~~~-~~~~~L~I~~~~~-~D~G~Y~C 991 (1884)
.||.|...+.+..+.+|++++|.|.+. +.|.+.|+|+|+|..+. ...++.+... ++...|.|.+++. +|+|.|+|
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C 82 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAAR--GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC 82 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEE--CSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEc--cCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence 689999999999999999999999998 67888999999999997 5667766543 5567999999999 99999999
Q ss_pred EEEcCCee-EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCC
Q psy2148 992 KATNKHGE-ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAG 1070 (1884)
Q Consensus 992 ~a~N~~G~-~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 1070 (1884)
.|.|..|. .+..+.|.|...+..+ ..+|.+...... ..+.+|+
T Consensus 83 ~~~n~~g~~~~~~~~l~V~~~~~~~-----------------------------------~~~p~~~~~~~~-~~~~~g~ 126 (212)
T 2yd1_A 83 VAENGVGDAVSADATLTIYEGDKTP-----------------------------------AGFPVITQGPGT-RVIEVGH 126 (212)
T ss_dssp EEECSSSCEEEEEEEEEEECTTCSC-----------------------------------TTCCEEEECCCC-EEEETTC
T ss_pred EEEeCCCCeEEeeEEEEEecccCCC-----------------------------------CCCCeeEeCCCc-eEeecCC
Confidence 99999998 7888999998543211 123555544433 6677899
Q ss_pred cEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEE-EEEEEeec
Q psy2148 1071 KVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK-AKVICKAK 1149 (1884)
Q Consensus 1071 ~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~-~~l~v~~~ 1149 (1884)
.+.|.|.+. +.|.+.|.|+++|..+......... .++ .|.|.++..+|+|.|+|.|.|..|...+. +.|.|...
T Consensus 127 ~v~l~C~~~--g~p~p~i~W~~~~~~~~~~~~~~~~-~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~ 201 (212)
T 2yd1_A 127 TVLMTCKAI--GNPTPNIYWIKNQTKVDMSNPRYSL-KDG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR 201 (212)
T ss_dssp CEEECCEEE--CSSCCEEEEEETTEECCTTSTTEEE-ETT--EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred eEEEEEEec--cCCCCeEEEEECCeEcccCCCeEEc-cCC--eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEec
Confidence 999999997 8889999999999999864332222 233 79999999999999999999999999875 89998864
Q ss_pred c
Q psy2148 1150 H 1150 (1884)
Q Consensus 1150 ~ 1150 (1884)
.
T Consensus 202 ~ 202 (212)
T 2yd1_A 202 R 202 (212)
T ss_dssp -
T ss_pred c
Confidence 3
No 111
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.88 E-value=3.4e-22 Score=242.30 Aligned_cols=283 Identities=13% Similarity=0.204 Sum_probs=174.4
Q ss_pred ccCCCCcEEEEEEEeecCCCCCeEEEeeC--CccCC-----------------CCCCeEEEee--CCEEEEEEcccCcCC
Q psy2148 718 DLREGENAHFEARLTPTDDPKLKVEWFWN--GKPMK-----------------TGSRFRTFCD--FGFVILEISPVYPED 776 (1884)
Q Consensus 718 ~v~~G~~~~l~C~~~~~g~p~~~v~W~k~--g~~l~-----------------~~~~~~~~~~--~~~~~L~i~~~~~~d 776 (1884)
.+.+|++++|.|.+.+...|.+.+.|+|+ |..+. ...|+.+..+ ++...|.|.+++.+|
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 90 (344)
T 1za6_B 11 VVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSED 90 (344)
T ss_dssp EECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCccc
Confidence 68899999999999853235689999996 44321 2346666554 356789999999999
Q ss_pred CeEEEEEEEecCceEEEEEEEEEecceeeEEeccCCCCceEEEEEeeecCCCcCCCceeEEEEEccccceeEEEEEEEec
Q psy2148 777 CGQYSCRAYNDYGEAVTSASMKVQGKRSIILESQLPKGMEVFISFHEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQG 856 (1884)
Q Consensus 777 ~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~g~~~~~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~s~~l~v~~ 856 (1884)
+|.|+|.|.|..+.....+.|.|...+
T Consensus 91 ~G~Y~C~~~n~~~~~~~~~~l~V~~~~----------------------------------------------------- 117 (344)
T 1za6_B 91 TAVYFCTRSLNMAYWGQGTLVTVSSAS----------------------------------------------------- 117 (344)
T ss_dssp CEEEEEEETTTTCEECCCEEEEECSSC-----------------------------------------------------
T ss_pred CEEEEEEEecCcceecCcEEEEEecCC-----------------------------------------------------
Confidence 999999998865444344455443100
Q ss_pred ccceEEeecCCCCcccccceeeecccCCcccccchhhhhhhhccCCCCcccccccccCCCCeeeecCCceeecCCCeEEE
Q psy2148 857 KRSIILESQLPKGMEGTIDKIAELEGYGHEREDRTIDKIAELEGYGHEREDRIEEDLGKAPEFLTTPTDLTLAESTLAHF 936 (1884)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~l 936 (1884)
..+|.+........+.+|+.++|
T Consensus 118 ---------------------------------------------------------~~~P~i~~~~~~~~~~~g~~v~L 140 (344)
T 1za6_B 118 ---------------------------------------------------------TKGPSVFPLAPSSKSTSGGTAAL 140 (344)
T ss_dssp ---------------------------------------------------------CBCCEEEEECCSCTTTSSSEEEE
T ss_pred ---------------------------------------------------------CCCCeEEEccccccccCCCcEEE
Confidence 02344443333345678999999
Q ss_pred EEEEeeCCCCC-cEEEEeeCCEEcc---------CCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEE
Q psy2148 937 ECRLTPTNDPS-MTVEWFHNGKALS---------AGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKL 1006 (1884)
Q Consensus 937 ~C~v~~~~~P~-~~v~W~~~g~~i~---------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 1006 (1884)
.|.+.+ ..|. +.|+|+|+|..+. .+.++.. .+.|.|.++..+| |.|+|.|.|..|.......+
T Consensus 141 ~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~ 213 (344)
T 1za6_B 141 GCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 213 (344)
T ss_dssp EEEEEE-EBSSCCCEEETTTTBCTTEEECCCEECTTSCEEE-----EEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEE
T ss_pred EEEEee-EECCCeEEEEecCCccCceeECCCeECCCCCEEE-----EEEEEEcHHHcCC-CcEEEEEEeCCCCccceEee
Confidence 999985 2354 7999999998642 1122222 2369999998888 99999999999876554443
Q ss_pred EEEeecccc-cccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCC
Q psy2148 1007 TVKGRQGID-VEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPT 1085 (1884)
Q Consensus 1007 ~V~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~ 1085 (1884)
.+.....+. ..+. ..... +........+|.+......... .+|+.+.|.|.+.+...|.
T Consensus 214 ~~~v~~~~~~~~~~------~~~~~-------------l~~~~~~~~~P~v~~~~~~~~~-~~~~~~~L~C~~~g~~P~~ 273 (344)
T 1za6_B 214 EPKSCDKTHTCPPC------GGGSS-------------GGGSGGQPREPQVYTLPPSRDE-LTKNQVSLTCLVKGFYPSD 273 (344)
T ss_dssp CCCCC---------------------------------------CCBCCEEEEECCCGGG-GGSSSEEEEEEEEEEBSSC
T ss_pred cccccccccccCCC------CCCcc-------------ccccCCCCcCCEEEEeCCChHh-ccCCcEEEEEEEeeEECCC
Confidence 321100000 0000 00000 0000011245665544333222 3467799999998422235
Q ss_pred cEEEEEECCEeccCCCceEE-EeeCc----EEEEEEcccCcCCcEEEEEEEEcCCee
Q psy2148 1086 MRIDWFFNGRPFATGSRVKT-VYDFG----FISLDMDYVYARDSGEYICRATNKWGT 1137 (1884)
Q Consensus 1086 ~~v~W~k~~~~l~~~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~G~ 1137 (1884)
+.|.|+|||+.+........ ...++ ...|.|.....+|+|.|+|.|.|....
T Consensus 274 ~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 274 IAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 330 (344)
T ss_dssp CEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred eEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence 78999999998865322111 12222 234677766667899999999997643
No 112
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.88 E-value=1.8e-21 Score=214.39 Aligned_cols=178 Identities=13% Similarity=0.185 Sum_probs=152.8
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEe-ccCCCeEEEEeCCeecCCCC--CeEEEEeCc-------eeEEEEcccccCCC
Q psy2148 1638 KPPVFTKKIQPCRAFEQDQARFEVEFD-GDPLPTIKWFREDFPITSSP--DFQIHTFST-------KSILIMRQVFMEDS 1707 (1884)
Q Consensus 1638 ~~p~~~~~~~~~~v~~G~~~~l~C~~~-g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~-------~~~L~i~~v~~~Ds 1707 (1884)
++|.|+..+.+..+.+|+++.|.|.+. |.|.+.+.|+|+|..+.... ++++....+ .+.|.|.++..+|+
T Consensus 1 e~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 80 (195)
T 2c5d_C 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80 (195)
T ss_dssp -CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred CCCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence 368899999999999999999999999 99999999999999987663 333333232 46899999999999
Q ss_pred eEEEEEEEeCCceEEEE-EEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCc-EEEEEeCCEecCC
Q psy2148 1708 GVFAVIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLKNGKKIIP 1785 (1884)
Q Consensus 1708 G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~~~~l~~ 1785 (1884)
|.|.|.+.|..|..... +.|.|. .+|.+...+....+.+|+.++|.|.+.|.|.| .|.|+|++..+..
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~l~V~----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~ 150 (195)
T 2c5d_C 81 GQYQCLVFLGHQTFVSQPGYVGLE----------GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLAT 150 (195)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEC----------CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSS
T ss_pred cEEEEEEEeCCCceecccEEEEEe----------cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccC
Confidence 99999999998875544 788887 57889988888999999999999999999999 9999999999876
Q ss_pred CCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEE-EEEEEEE
Q psy2148 1786 DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEAR-CEAELVV 1832 (1884)
Q Consensus 1786 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V 1832 (1884)
.... .....|.|.++. |+|.|+|.|.|..|... .++.|.|
T Consensus 151 ~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 151 APGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp STTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 6543 234589999987 88999999999999986 7899998
No 113
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.88 E-value=6.4e-22 Score=217.66 Aligned_cols=184 Identities=26% Similarity=0.379 Sum_probs=159.9
Q ss_pred CCCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCC-CCCeEEEEeCceeEEEEcccccCCCeEEEEEE
Q psy2148 1636 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-SPDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 1714 (1884)
Q Consensus 1636 ~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a 1714 (1884)
...+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+ ..+...|.|.+++.+|+|.|+|.+
T Consensus 4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (192)
T 2iep_A 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSI--RENGQLLTILSVEDSDDGIYCCTA 81 (192)
T ss_dssp CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEE--EGGGTEEEESSCCGGGCEEEEEEE
T ss_pred cCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEE--cCCccEEEEcCCCcccCeEEEEEE
Confidence 34578888888889999999999999999999999999999998865 334443 345568999999999999999999
Q ss_pred EeCCce-EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEee
Q psy2148 1715 ENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE 1793 (1884)
Q Consensus 1715 ~n~~g~-~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~ 1793 (1884)
.|..|. ....+.|.|. .+|.+...+....+..|+.++|.|.+.|.|.|.++|+|++..+..+.++.+..
T Consensus 82 ~~~~~~~~~~~~~l~v~----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~ 151 (192)
T 2iep_A 82 NNGVGGAVESCGALQVK----------MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE 151 (192)
T ss_dssp ECSSSCCEEEEEEEEEE----------EEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECT
T ss_pred EcCCCceeEeEEEEEEE----------eCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEec
Confidence 999887 5667788888 46778888888899999999999999999999999999999998888877765
Q ss_pred cCCeEEEEEccCCCCCCEEEEEEEEeCCeeEE-EEEEEEEEe
Q psy2148 1794 EDNLFTLLIIEAVVEDSGAYECVAMNNAGEAR-CEAELVVQS 1834 (1884)
Q Consensus 1794 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~ 1834 (1884)
++ .|.|.++..+|+|.|+|.|.|..|... ..+.|.|..
T Consensus 152 ~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 190 (192)
T 2iep_A 152 SG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190 (192)
T ss_dssp TS---CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CC---cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence 55 799999999999999999999999884 568898876
No 114
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.88 E-value=5.8e-21 Score=209.26 Aligned_cols=181 Identities=22% Similarity=0.344 Sum_probs=147.9
Q ss_pred CCCeeeecCCceeecC-CCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAE-STLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~-G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
.||.|.. +.+..+.+ |+.+.|.|.+.+.+.|.+.|+|+|+|..+..+.... ....|.|.+++.+|+|.|+|.|
T Consensus 2 ~~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~ 75 (190)
T 2wv3_A 2 NEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVY 75 (190)
T ss_dssp -CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEE
Confidence 4788877 45566667 999999999985333348999999999998765432 3358999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
.|. |..+..+.|.|..+ |.+..... ...+.+|+.+.
T Consensus 76 ~n~-~~~~~~~~l~V~~~------------------------------------------p~~~~~~~-~~~~~~g~~v~ 111 (190)
T 2wv3_A 76 HFV-SAPKANATIEVKAA------------------------------------------PDITGHKR-SENKNEGQDAM 111 (190)
T ss_dssp EET-TEEEEEEEEEEECC------------------------------------------CEEEEECS-EEEEETTSCEE
T ss_pred EeC-CcccccEEEEEecC------------------------------------------CcccccCC-cceeeCCCcEE
Confidence 999 99999999999854 33333322 25577999999
Q ss_pred EEEEEeeCCCCCcEEEEEE--CCEecc---CCCceEEEeeCcEEEEEEcccC-cCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1074 FDCRLEPKSDPTMRIDWFF--NGRPFA---TGSRVKTVYDFGFISLDMDYVY-ARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1074 l~C~v~~~~~p~~~v~W~k--~~~~l~---~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
|.|.+. |.|.+.+.|++ +|..+. .+.++.+..++....|.|.++. .+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 112 l~C~~~--g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 112 MYCKSV--GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEEEEE--CSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEeC--ccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 999997 88899999999 888775 4567777777777799999999 799999999999999999999999875
No 115
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.88 E-value=1.2e-21 Score=237.46 Aligned_cols=182 Identities=13% Similarity=0.205 Sum_probs=125.8
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEc-----------------cCCCcEEEEee--CCeEEEEEcc
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKAL-----------------SAGSRIKTIND--FGFVILEIND 980 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i-----------------~~~~~~~~~~~--~~~~~L~I~~ 980 (1884)
.+.++.+.+|++++|.|.+.+...|.+.|.|+|+ |..+ ....|+.+..+ ++...|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (344)
T 1za6_B 6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS 85 (344)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence 3556789999999999999853335678999996 4332 12357776654 4567899999
Q ss_pred CCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeec
Q psy2148 981 VYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQL 1060 (1884)
Q Consensus 981 ~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 1060 (1884)
++.+|+|.|+|.|.|..+.....+.|.|...+ +.+|.+....
T Consensus 86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~--------------------------------------~~~P~i~~~~ 127 (344)
T 1za6_B 86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS--------------------------------------TKGPSVFPLA 127 (344)
T ss_dssp CCGGGCEEEEEEETTTTCEECCCEEEEECSSC--------------------------------------CBCCEEEEEC
T ss_pred CCcccCEEEEEEEecCcceecCcEEEEEecCC--------------------------------------CCCCeEEEcc
Confidence 99999999999999977666666788886311 0234333222
Q ss_pred CCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceEEEeeCc----EEEEEEcccCcCCcEEEEEEEEcCC
Q psy2148 1061 QDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVKTVYDFG----FISLDMDYVYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1061 ~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 1135 (1884)
. ...+.+|+.++|.|.+.+ ..|. +.|.|+|+|..+...........++ ...|.|..+..+| |.|+|.|.|..
T Consensus 128 ~-~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~ 204 (344)
T 1za6_B 128 P-SSKSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 204 (344)
T ss_dssp C-SCTTTSSSEEEEEEEEEE-EBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGG
T ss_pred c-cccccCCCcEEEEEEEee-EECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCC
Confidence 2 245679999999999983 2354 7999999998642110000011111 2369999988888 99999999999
Q ss_pred eeeEEEEEE
Q psy2148 1136 GTAMTKAKV 1144 (1884)
Q Consensus 1136 G~~~~~~~l 1144 (1884)
|.......+
T Consensus 205 ~~~~~~~~~ 213 (344)
T 1za6_B 205 SNTKVDKKV 213 (344)
T ss_dssp GTEEEEEEE
T ss_pred CCccceEee
Confidence 875544433
No 116
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.87 E-value=4.7e-21 Score=214.64 Aligned_cols=182 Identities=14% Similarity=0.103 Sum_probs=153.0
Q ss_pred CCCeEEEEEEEecc-CCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy2148 1653 EQDQARFEVEFDGD-PLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEE 1731 (1884)
Q Consensus 1653 ~G~~~~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~ 1731 (1884)
.|+.+.|.|.+.|. |.+.++|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~ 95 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA 95 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHH
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEee
Confidence 46778999999985 58999999999999988888888888888899999999999999999999999888777776642
Q ss_pred cccC-----------CCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeec-CCeEE
Q psy2148 1732 KRQG-----------GRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE-DNLFT 1799 (1884)
Q Consensus 1732 ~~~~-----------~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~ 1799 (1884)
.... ......|+.+...+....+.+|+.++|.|.+.|.|.|.|.|+|++..+..+.++.+... +....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 175 (212)
T 2r15_A 96 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY 175 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEE
T ss_pred ccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEE
Confidence 0000 00000234444556678899999999999999999999999999999998888887765 66789
Q ss_pred EEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1800 LLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1800 L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 176 L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 176 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 99999999999999999999999999999999975
No 117
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.87 E-value=5.3e-21 Score=209.49 Aligned_cols=179 Identities=20% Similarity=0.327 Sum_probs=153.4
Q ss_pred eeeecCCceeecCCCeEEEEEEEeccCCCeEEEEe-CCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCc
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR-EDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 1719 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g 1719 (1884)
.|...+.+..+.+|+.+.|.|.+.|.|. .+.|++ ++..+....++.+...+....|.|.++..+|+|.|+|.+.|..|
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 82 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 82 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred EEEecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCCC
Confidence 4566778889999999999999999988 999999 78888888888888877788999999999999999999999988
Q ss_pred eE-EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecC--CCCCeEEeecCC
Q psy2148 1720 KA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKII--PDIRYKTLEEDN 1796 (1884)
Q Consensus 1720 ~~-~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~--~~~~~~~~~~~~ 1796 (1884)
.. ...+.|.|. .+|.+...+....+..|+.++|.|.+.|.|.|.++|+|++..+. .+.++.+..++
T Consensus 83 ~~~~~~~~l~v~----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~- 151 (189)
T 2v44_A 83 QTQEATVVLEIY----------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 151 (189)
T ss_dssp CEEEEEEEEEEE----------CCCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEECTTS-
T ss_pred CcEEEEEEEEEe----------cCCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEecCC-
Confidence 75 677888887 47888877888899999999999999999999999999999885 35566665554
Q ss_pred eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1797 LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1797 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
.|.|.++..+|+|.|+|.|.|..|.......++|.
T Consensus 152 --~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~ 186 (189)
T 2v44_A 152 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186 (189)
T ss_dssp --CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEE
T ss_pred --cEEEEEcCcccCeEEEEEEEccccCceeeeeEEEE
Confidence 79999999999999999999999876655555554
No 118
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.87 E-value=6.5e-22 Score=216.30 Aligned_cols=171 Identities=13% Similarity=0.145 Sum_probs=130.5
Q ss_pred ceeecCCCeEEEEEEEee-CCCCCcEEEEeeCCEEcc-----------------CCCcEEEEeeCCeEEEEEccCCCCCC
Q psy2148 925 DLTLAESTLAHFECRLTP-TNDPSMTVEWFHNGKALS-----------------AGSRIKTINDFGFVILEINDVYLRDS 986 (1884)
Q Consensus 925 ~~~v~~G~~v~l~C~v~~-~~~P~~~v~W~~~g~~i~-----------------~~~~~~~~~~~~~~~L~I~~~~~~D~ 986 (1884)
++++..|+.++|.|.+.. .+.|.+.|+|+|+|..+. ...++.+....+.+.|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 578899999999996431 267889999999874321 12345566667778999999999999
Q ss_pred eEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCc
Q psy2148 987 GLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDV 1066 (1884)
Q Consensus 987 G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 1066 (1884)
|.|+|.|.|..|..+..+.|.|..+|. +..... ...+
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~------------------------------------------~~~~~~-~~~v 118 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVKPLT------------------------------------------LSVHSE-RSQF 118 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEEE------------------------------------------EEEEEE-ECCS
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCce------------------------------------------eeecce-eEEE
Confidence 999999999999999999999985443 222222 3678
Q ss_pred CCCCcEEEEEEEeeCCCCCcEEEEEECCEecc----CCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEE
Q psy2148 1067 PEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFA----TGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMT 1140 (1884)
Q Consensus 1067 ~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~ 1140 (1884)
.+|+.++|.|.+. |.|.|.|.|++++..+. .+.++.+..++....|.|.++..+|+|.|+|.|+|.+|.++.
T Consensus 119 ~~g~~~~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 119 PDFSVLTVTCTVN--AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp SCSCCEEEEEEEE--EESCCEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred cCCCEEEEEEEcC--CCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 8999999999998 78999999998775543 234454444555566778899999999999999999998875
No 119
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.87 E-value=1e-20 Score=208.10 Aligned_cols=182 Identities=20% Similarity=0.327 Sum_probs=154.9
Q ss_pred CCeeeecCC--ceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEe
Q psy2148 1639 PPVFTKKIQ--PCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716 (1884)
Q Consensus 1639 ~p~~~~~~~--~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n 1716 (1884)
||.+..... ++.+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+ ......|.|.++..+|+|.|.|.+.|
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~ 79 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATN 79 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEE--ETTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEE--eCCeeEEEEecCChhcCcEEEEEEEc
Confidence 566665544 57788999999999999999999999999999887766554 35567899999999999999999999
Q ss_pred CCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeC--CEecCC-----CCCe
Q psy2148 1717 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKN--GKKIIP-----DIRY 1789 (1884)
Q Consensus 1717 ~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~--~~~l~~-----~~~~ 1789 (1884)
..|.....+.|.|.. +|.+... ....+..|+.++|.|.+.|.|.|.+.|+|+ +..+.. ..++
T Consensus 80 ~~~~~~~~~~l~V~~----------~p~~~~~-~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 148 (192)
T 2va4_A 80 KAGEDEKQAFLQVFV----------QPHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRI 148 (192)
T ss_dssp TTEEEEEEEEEEEEE----------EEEEEEE-CCEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCE
T ss_pred cccccceEEEEEEEc----------cCccccc-CcceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcE
Confidence 999988899999974 5666543 456778899999999999999999999999 666654 3466
Q ss_pred EEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1790 KTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1790 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
.+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 149 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 192 (192)
T 2va4_A 149 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192 (192)
T ss_dssp EEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEeeccCceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEeC
Confidence 66666667799999999999999999999999999999999884
No 120
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.86 E-value=1.7e-20 Score=205.90 Aligned_cols=181 Identities=16% Similarity=0.253 Sum_probs=152.7
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccC-CCeEEEEe-CCeecC-CCCCeEEEEe-CceeEEEEcccccCCCeEEEEEE
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFR-EDFPIT-SSPDFQIHTF-STKSILIMRQVFMEDSGVFAVIA 1714 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p-~~~i~W~~-~~~~~~-~~~~~~~~~~-~~~~~L~i~~v~~~DsG~Y~C~a 1714 (1884)
|+.|...+.+..+.+|+.+.|.|.+.|.| .+.+.|++ +|..+. ...++.+... .....|.|.++..+|+|.|.|.+
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence 56778888899999999999999999987 89999999 888776 3445554433 56788999999999999999999
Q ss_pred EeCC-ceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCC--CCCeEE
Q psy2148 1715 ENRG-GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIP--DIRYKT 1791 (1884)
Q Consensus 1715 ~n~~-g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~--~~~~~~ 1791 (1884)
.|.. +.....+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.. ..++.+
T Consensus 82 ~~~~~~~~~~~~~l~v~----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~ 151 (191)
T 1epf_A 82 TAEDGTQSEATVNVKIF----------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV 151 (191)
T ss_dssp EETTTEEEEEEEEEEEE----------CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEE
T ss_pred EcCCCcceEEEEEEEee----------cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEE
Confidence 9998 567777888887 478898888899999999999999999999999999999999864 345655
Q ss_pred eecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2148 1792 LEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1792 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
..++ .|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 152 ~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 152 LSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp CTTS---CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred ecCC---eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 5444 7999999999999999999999986666655555
No 121
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.86 E-value=2e-20 Score=205.74 Aligned_cols=182 Identities=26% Similarity=0.410 Sum_probs=150.5
Q ss_pred CCeeeecCC--ceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 916 APEFLTTPT--DLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 916 ~p~~~~~~~--~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
||.|..... ++.+.+|+.+.|.|.+. +.|.+.|+|+|+|..+....++.+...+. .|.|.+++.+|+|.|+|.|
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~ 77 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRAS--GSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRA 77 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEE--CSSCCEEEEEETTEECCCSSSEEEETTTT--EEEECSCCGGGCEEEEEEE
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeec--cCCCCeEEEEECCeEcCCCccEEEeCCee--EEEEecCChhcCcEEEEEE
Confidence 677776554 57889999999999998 67888999999999999888887654443 7999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
.|..|.....+.|.|..+|.+.. .. ...+.+|+.+.
T Consensus 78 ~~~~~~~~~~~~l~V~~~p~~~~------------------------------------------~~--~~~~~~g~~v~ 113 (192)
T 2va4_A 78 TNKAGEDEKQAFLQVFVQPHIIQ------------------------------------------LK--NETTYENGQVT 113 (192)
T ss_dssp EETTEEEEEEEEEEEEEEEEEEE------------------------------------------EC--CEEECTTSEEE
T ss_pred EccccccceEEEEEEEccCcccc------------------------------------------cC--cceEEeCCeEE
Confidence 99999999999999976554321 11 13455799999
Q ss_pred EEEEEeeCCCCCcEEEEEEC--CEeccC-----CCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEE
Q psy2148 1074 FDCRLEPKSDPTMRIDWFFN--GRPFAT-----GSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1074 l~C~v~~~~~p~~~v~W~k~--~~~l~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v 1146 (1884)
|.|.+. +.|.+.+.|+++ +..+.. +.++......+...|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 114 l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 191 (192)
T 2va4_A 114 LVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191 (192)
T ss_dssp EEEEEE--EESCCEEEEEETTTTEEECTTCBCTTSCEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEec--CCCCCcEEEEeCCCCceeeccccccCCcEEEeeccCceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEe
Confidence 999997 678889999998 666654 34555655666779999999999999999999999999999988887
Q ss_pred e
Q psy2148 1147 K 1147 (1884)
Q Consensus 1147 ~ 1147 (1884)
+
T Consensus 192 ~ 192 (192)
T 2va4_A 192 E 192 (192)
T ss_dssp C
T ss_pred C
Confidence 4
No 122
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.86 E-value=7.7e-21 Score=206.72 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=147.0
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCc--eeEEEEcccccCCCeEEEEEEEe
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFST--KSILIMRQVFMEDSGVFAVIAEN 1716 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~DsG~Y~C~a~n 1716 (1884)
+|.|...+....+.+|+++.|.|.+.|.|.+.+.|+|++..+....+..+..... ...|.|.++..+|+|.|.|.+.|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 81 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 81 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence 4678888888999999999999999999999999999999987765555544333 46899999999999999999999
Q ss_pred CCce-EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCc-EEEEEeCCEecCCCCCeEEeec
Q psy2148 1717 RGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL-DVYWLKNGKKIIPDIRYKTLEE 1794 (1884)
Q Consensus 1717 ~~g~-~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~~~~l~~~~~~~~~~~ 1794 (1884)
..|. ....+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+.....
T Consensus 82 ~~~~~~~~~~~l~V~----------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~------ 145 (182)
T 1rhf_A 82 GGETEISQPVWLTVE----------GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP------ 145 (182)
T ss_dssp CTTCEECCCEEEEEE----------CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE------
T ss_pred CCCcEEEEEEEEEEe----------cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC------
Confidence 8775 4567889998 58889988888999999999999999999999 9999999998854421
Q ss_pred CCeEEEEEccCCCCCCEEEEEEEEeCCeeEE-EEEEEEEE
Q psy2148 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAGEAR-CEAELVVQ 1833 (1884)
Q Consensus 1795 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~ 1833 (1884)
....|.|.++ +|+|.|+|.|.|..|... .++.|.|+
T Consensus 146 -~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 146 -SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp -SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred -CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence 3458999988 589999999999999886 47888773
No 123
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.86 E-value=8.8e-21 Score=207.95 Aligned_cols=183 Identities=20% Similarity=0.335 Sum_probs=147.0
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCC
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 1718 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~ 1718 (1884)
+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+......++.. ..+++|.|.++..+|+|.|+|.+.|..
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 80 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM-LANNNLQILNINKSDEGIYRCEGRVEA 80 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEE-CTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEE-ecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence 6788999999999999999999999999999999999998776432222222 234569999999999999999999987
Q ss_pred ceEE--EEEEEEEEecccCCCCCCCCCeEEeccC--ceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeec
Q psy2148 1719 GKAK--CSANLVVEEKRQGGRGGVVPPSFLTTIS--SAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794 (1884)
Q Consensus 1719 g~~~--~~~~l~V~~~~~~~~~~~~~P~~~~~~~--~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~ 1794 (1884)
+... ..+.+.|.. +|.+...+. ...+..|+.++|.|.+.|.|.|.+.|+|+|..+....++.+...
T Consensus 81 ~~~~~~~~~~l~v~~----------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~ 150 (189)
T 2v5t_A 81 RGEIDFRDIIVIVNV----------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS 150 (189)
T ss_dssp TTEEEEEEEEEEEEE----------EEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETT
T ss_pred CCceEEEEEEEEecC----------CCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecC
Confidence 5433 455666663 565654433 45677899999999999999999999999999988888776654
Q ss_pred CCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1795 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
+. .|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 151 ~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 151 NT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp TT--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CC--EEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 43 899999999999999999999999999999999864
No 124
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=210.75 Aligned_cols=195 Identities=20% Similarity=0.276 Sum_probs=154.0
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEE
Q psy2148 930 ESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009 (1884)
Q Consensus 930 ~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 1009 (1884)
.++.+.|.|.+.+ ..|.+.|+|+|+|..|..+.++.+...++.+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 16 ~~~~~~l~C~~~~-~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~ 94 (212)
T 2r15_A 16 TAEGIQLYSFVTY-YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94 (212)
T ss_dssp CSSEEEEEEEBSS-CCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred cCceEEEEEEEec-cCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence 6888999999984 256889999999999999999998888888899999999999999999999999988877777665
Q ss_pred eecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEE
Q psy2148 1010 GRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRID 1089 (1884)
Q Consensus 1010 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~ 1089 (1884)
..+... ..++.+....+. ....|.+.........+.+|+.+.|.|.+. |.|.+.|.
T Consensus 95 ~~~~~~-------------~~~~~~~~~~~~---------~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~--g~p~p~v~ 150 (212)
T 2r15_A 95 AYDEAY-------------AEFQRLKQAAIA---------EKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEVS 150 (212)
T ss_dssp HHHHHH-------------HHHHHHHHHHHH---------HHHSCEEEEBCCSEEEEETTCCEEEEEEEE--CSSCCEEE
T ss_pred eccchh-------------hhccccCccccc---------ccCCCcccccCCCcEEEccCCeEEEEEEEc--CCCCceEE
Confidence 321100 000000000000 002344555445557788999999999998 88999999
Q ss_pred EEECCEeccCCCceEEEee-CcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeec
Q psy2148 1090 WFFNGRPFATGSRVKTVYD-FGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAK 1149 (1884)
Q Consensus 1090 W~k~~~~l~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~ 1149 (1884)
|+|+|..+..+.++.+... ++...|.|.++..+|+|.|+|.|.|..|..+..+.|.|..|
T Consensus 151 W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 211 (212)
T 2r15_A 151 WLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211 (212)
T ss_dssp EEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence 9999999998888777665 66789999999999999999999999999999999988743
No 125
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.85 E-value=2.5e-20 Score=205.26 Aligned_cols=178 Identities=20% Similarity=0.359 Sum_probs=144.4
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCC--cEEEEeeCC-------eEEEEEccCCCCCC
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS--RIKTINDFG-------FVILEINDVYLRDS 986 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~--~~~~~~~~~-------~~~L~I~~~~~~D~ 986 (1884)
+|.|+..+.+..+.+|+++.|.|.+.. +.|.+.|+|+|+|..+.... ++++..... ...|.|.+++.+|+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~-~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 80 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQV-QGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEE-ESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred CCeeccChhheEEecCCcEEEeccccc-CCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence 689999999999999999999999982 35777999999999998773 444443322 46899999999999
Q ss_pred eEEEEEEEcCCeeEEEE-EEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcC
Q psy2148 987 GLYTCKATNKHGEATTS-CKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLD 1065 (1884)
Q Consensus 987 G~Y~C~a~N~~G~~~~~-~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 1065 (1884)
|.|+|.|.|..|..... +.|.|.. +|.+...... ..
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~l~V~~------------------------------------------~p~~~~~~~~-~~ 117 (195)
T 2c5d_C 81 GQYQCLVFLGHQTFVSQPGYVGLEG------------------------------------------LPYFLEEPED-RT 117 (195)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECC------------------------------------------SCEEEECCCC-EE
T ss_pred cEEEEEEEeCCCceecccEEEEEec------------------------------------------CCeEEcCCCc-EE
Confidence 99999999998876544 7888864 3444433333 66
Q ss_pred cCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeE-EEEE
Q psy2148 1066 VPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAM-TKAK 1143 (1884)
Q Consensus 1066 v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~-~~~~ 1143 (1884)
+.+|+.+.|.|.+. |.|.+ .|.|+|+|..+...... .....|.|.+++ |+|.|+|.|.|..|... ..+.
T Consensus 118 ~~~g~~~~l~C~~~--g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~ 188 (195)
T 2c5d_C 118 VAANTPFNLSCQAQ--GPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTAT 188 (195)
T ss_dssp ECTTCCEEEEEEEE--CSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEE
T ss_pred EcCCCEEEEEeECC--CCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEE
Confidence 78899999999997 78888 99999999998866543 234579999987 89999999999999986 6888
Q ss_pred EEE
Q psy2148 1144 VIC 1146 (1884)
Q Consensus 1144 l~v 1146 (1884)
|.|
T Consensus 189 l~V 191 (195)
T 2c5d_C 189 ITV 191 (195)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
No 126
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.85 E-value=4.3e-21 Score=211.03 Aligned_cols=185 Identities=25% Similarity=0.387 Sum_probs=150.6
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccC-CCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA-GSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
..+|.|...+.++.+.+|+++.|.|.+. +.|.+.|+|+|+|..+.. ..++.+..++. +|.|.+++.+|+|.|+|.
T Consensus 5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~--~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~ 80 (192)
T 2iep_A 5 PKAPVITTPLETVDALVEEVATFMCAVE--SYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLTILSVEDSDDGIYCCT 80 (192)
T ss_dssp CEEEEESSCCCEEEEETTSCEEEECCEE--EESCCEEEEEETTEECCTTCTTEEEEGGGT--EEEESSCCGGGCEEEEEE
T ss_pred CCCceeecCccceeeeCCCcEEEEeeCC--CCCCCeEEEEECCEEccccCccEEEcCCcc--EEEEcCCCcccCeEEEEE
Confidence 4678898889999999999999999998 567789999999999865 56776665544 699999999999999999
Q ss_pred EEcCCee-EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCc
Q psy2148 993 ATNKHGE-ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGK 1071 (1884)
Q Consensus 993 a~N~~G~-~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~ 1071 (1884)
|.|..|. .+..+.|.|..+|.+.. ... ...+.+|+.
T Consensus 81 ~~~~~~~~~~~~~~l~v~~~p~~~~------------------------------------------~~~-~~~~~~g~~ 117 (192)
T 2iep_A 81 ANNGVGGAVESCGALQVKMKPKITR------------------------------------------PPI-NVKIIEGLK 117 (192)
T ss_dssp EECSSSCCEEEEEEEEEEEEEEEEE------------------------------------------CCC-CEEEETTSC
T ss_pred EEcCCCceeEeEEEEEEEeCCcccc------------------------------------------CCc-ceEEeCCCc
Confidence 9999887 56677888886554321 111 255678999
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEE-EEEEEEeecc
Q psy2148 1072 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMT-KAKVICKAKH 1150 (1884)
Q Consensus 1072 ~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~-~~~l~v~~~~ 1150 (1884)
+.|.|.+. +.|.+.+.|+++|..+..+.++....+ + .|.|.++..+|+|.|+|.|.|..|...+ .+.|.|..+|
T Consensus 118 ~~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 118 AVLPCTTM--GNPKPSVSWIKGDSALRENSRIAVLES-G--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp EEECCEEE--EESCCEEEEEETTEECCCCSSEEECTT-S--CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEEEEEe--ccCCceEEEEeCCEEccCCCcEEEecC-C--cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 99999997 678889999999999988776654333 2 6999999999999999999999998854 5888887643
No 127
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=214.37 Aligned_cols=194 Identities=23% Similarity=0.333 Sum_probs=154.0
Q ss_pred CCCeeeecC----CceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCe-EEEEeCceeEEEEcccccCCCeEEEE
Q psy2148 1638 KPPVFTKKI----QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAV 1712 (1884)
Q Consensus 1638 ~~p~~~~~~----~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~DsG~Y~C 1712 (1884)
.+|.|+... ....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+....+. ..........|.|.++..+|+|.|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 89 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence 467777553 4678999999999999999999999999999988654432 22344566789999999999999999
Q ss_pred EEEeCCceEEEEEEEEEEecccCCCCCCCCCeEE-eccCceEEcCCceEEEEEEEecCCCcEEEEEe----CCEecCCCC
Q psy2148 1713 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFL-TTISSAVINVGQLARFDAKISATKPLDVYWLK----NGKKIIPDI 1787 (1884)
Q Consensus 1713 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~-~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k----~~~~l~~~~ 1787 (1884)
.+.|..|.....+.|.|..... .+|.+. ..+....+..|+.++|.|.+.|.|.|.+.|++ +|..+..+.
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~~~------~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~ 163 (241)
T 3grw_A 90 VVENKFGSIRQTYTLDVLERSP------HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG 163 (241)
T ss_dssp EEEETTEEEEEEEEEEEECCCC------CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTT
T ss_pred EEeecCCceEEEEEEEEeccCC------CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCC
Confidence 9999999999999999986432 234444 45677888999999999999999999999999 888886554
Q ss_pred CeEEe--------ecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecCC
Q psy2148 1788 RYKTL--------EEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSKKA 1837 (1884)
Q Consensus 1788 ~~~~~--------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 1837 (1884)
..... .......|.|.++..+|+|.|+|.|.|..|..+.++.|.|.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 221 (241)
T 3grw_A 164 TPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA 221 (241)
T ss_dssp CCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-----
T ss_pred ceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCC
Confidence 32211 112345899999999999999999999999999999999998654
No 128
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.85 E-value=1.2e-20 Score=214.75 Aligned_cols=196 Identities=24% Similarity=0.372 Sum_probs=157.6
Q ss_pred CCCCeeeecC----CceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeE-EEEeCceeEEEEcccccCCCeEEE
Q psy2148 1637 AKPPVFTKKI----QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQ-IHTFSTKSILIMRQVFMEDSGVFA 1711 (1884)
Q Consensus 1637 ~~~p~~~~~~----~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~DsG~Y~ 1711 (1884)
..+|.|...+ ....+.+|+++.|.|.+.|.|.+.+.|+|+|..+....++. .........|.|.++..+|+|.|+
T Consensus 13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 92 (231)
T 3ojm_B 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92 (231)
T ss_dssp CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence 3467777665 77889999999999999999999999999999886554332 133455678999999999999999
Q ss_pred EEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEe-ccCceEEcCCceEEEEEEEecCCCcEEEEEe----CCEecCCC
Q psy2148 1712 VIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISATKPLDVYWLK----NGKKIIPD 1786 (1884)
Q Consensus 1712 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~-~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k----~~~~l~~~ 1786 (1884)
|.+.|..|.....+.|.|...+. .+|.+.. .+....+..|+.++|.|.+.|.|.|.+.|+| +|..+..+
T Consensus 93 C~~~n~~~~~~~~~~l~V~~~~~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~ 166 (231)
T 3ojm_B 93 CVVENEYGSINHTYHLDVVERSR------HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPD 166 (231)
T ss_dssp EEEEETTEEEEEEEEEEEECCCC------CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTT
T ss_pred EEEecccCcccccEEEEEEcCCC------CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCC
Confidence 99999999999999999986443 2444443 3567889999999999999999999999999 88877655
Q ss_pred CCe--EEee-----cCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecCCC
Q psy2148 1787 IRY--KTLE-----EDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSKKAP 1838 (1884)
Q Consensus 1787 ~~~--~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 1838 (1884)
... .... ......|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 167 GLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225 (231)
T ss_dssp SCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred CcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence 322 1111 112237999999999999999999999999999999999987643
No 129
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.84 E-value=3.5e-20 Score=201.52 Aligned_cols=176 Identities=21% Similarity=0.360 Sum_probs=140.2
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCC--eEEEEEccCCCCCCeEEEEEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFG--FVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
+|.|...+.++.+.+|+++.|.|.+. +.|.+.+.|+|+|..+....++.+...+. ...|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 79 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV 79 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEE--SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEe--CCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEE
Confidence 57888888999999999999999998 67888999999999998887766554432 458999999999999999999
Q ss_pred EcCCee-EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 994 TNKHGE-ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 994 ~N~~G~-~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
.|..|. .+..+.|.|..+ |.+...... ..+.+|+.+
T Consensus 80 ~~~~~~~~~~~~~l~V~~~------------------------------------------p~~~~~~~~-~~~~~g~~~ 116 (182)
T 1rhf_A 80 EDGGETEISQPVWLTVEGV------------------------------------------PFFTVEPKD-LAVPPNAPF 116 (182)
T ss_dssp SSCTTCEECCCEEEEEECS------------------------------------------CEEEECCCC-EEECTTCCE
T ss_pred EcCCCcEEEEEEEEEEecC------------------------------------------CeEEecCcc-eEecCCCEE
Confidence 999775 456788888743 444433332 567899999
Q ss_pred EEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEE-EEEEEEe
Q psy2148 1073 HFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMT-KAKVICK 1147 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~-~~~l~v~ 1147 (1884)
.|.|.+. +.|.+ .|.|+++|..+..... ....|.|.++ +|+|.|+|.|.|..|...+ .+.|.|+
T Consensus 117 ~l~C~~~--g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 117 QLSCEAV--GPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp EEEEEEE--CSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred EEEeEec--CCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence 9999997 88888 9999999999865421 3457999987 5899999999999998864 7777763
No 130
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.84 E-value=4e-20 Score=202.53 Aligned_cols=179 Identities=17% Similarity=0.410 Sum_probs=144.5
Q ss_pred eeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEee-CCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcC
Q psy2148 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH-NGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNK 996 (1884)
Q Consensus 918 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~-~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 996 (1884)
.|...+.+..+.+|+++.|.|.+. +.|. .++|+| +|..+....++.+..+++.+.|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~--~~p~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 80 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAI--GEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 80 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEE--ECCS-EEEEECTTSCBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred EEEecCCceEEecCCcEEEEEEee--cCCe-eEEEEeCCCCccCCCceEEEECCCCeEEEEEccCCcccCeEEEEEEEeC
Confidence 567788899999999999999998 5566 899999 899998889998888888889999999999999999999999
Q ss_pred CeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEE
Q psy2148 997 HGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFD 1075 (1884)
Q Consensus 997 ~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~ 1075 (1884)
.|.. +..+.|.|..+|. +..... ...+.+|+.+.|.
T Consensus 81 ~g~~~~~~~~l~v~~~p~------------------------------------------~~~~~~-~~~~~~g~~~~l~ 117 (189)
T 2v44_A 81 KGQTQEATVVLEIYQKLT------------------------------------------FREVVS-PQEFKQGEDAEVV 117 (189)
T ss_dssp TSCEEEEEEEEEEECCCE------------------------------------------EESCCC-SEEEETTSCEEEC
T ss_pred CCCcEEEEEEEEEecCCc------------------------------------------eeecCC-cEEEeCCCCEEEE
Confidence 8876 6778888875432 222222 2456789999999
Q ss_pred EEEeeCCCCCcEEEEEECCEeccC--CCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1076 CRLEPKSDPTMRIDWFFNGRPFAT--GSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1076 C~v~~~~~p~~~v~W~k~~~~l~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
|.+. +.|.+.+.|+|+|..+.. +.++.... ++ .|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus 118 C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~-~~--~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~ 186 (189)
T 2v44_A 118 CRVS--SSPAPAVSWLYHNEEVTTISDNRFAMLA-NN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186 (189)
T ss_dssp CEEE--CSSCCEEEEEEEC--CEECCCTTEEECT-TS--CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEC--cCCCCcEEEEECCcEEeccCCCCEEEec-CC--cEEEEEcCcccCeEEEEEEEccccCceeeeeEEEE
Confidence 9998 888899999999998762 44444332 23 69999999999999999999999877666555554
No 131
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.84 E-value=1.2e-20 Score=211.96 Aligned_cols=187 Identities=20% Similarity=0.351 Sum_probs=151.5
Q ss_pred CCCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCC--eEEEEeCcee--EEEEcccccCCCeEEE
Q psy2148 1636 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD--FQIHTFSTKS--ILIMRQVFMEDSGVFA 1711 (1884)
Q Consensus 1636 ~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~--~L~i~~v~~~DsG~Y~ 1711 (1884)
...+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+..... ..+....... .|.|.++..+|+|.|+
T Consensus 6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~ 85 (217)
T 2vr9_A 6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW 85 (217)
T ss_dssp CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence 35789999999999999999999999999999999999999998866432 2222222111 2378899999999999
Q ss_pred EEEEeCCceEE-EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEE-ecCCCcEEEEEeCCEecCC----
Q psy2148 1712 VIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKNGKKIIP---- 1785 (1884)
Q Consensus 1712 C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~~~~l~~---- 1785 (1884)
|.+.|..|... ..+.|.|.. .+|.+...+....+..|+.+.|.|.+ .|.|.|.++|+|+|..+..
T Consensus 86 C~~~n~~g~~~~~~~~l~v~~---------~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~ 156 (217)
T 2vr9_A 86 CVAKNRVGQAVSRHASLQIAV---------LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAM 156 (217)
T ss_dssp EEEEETTEEEECCCEEEEECE---------ECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC
T ss_pred EEEecCCCccccccceEEEEE---------eCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCccccc
Confidence 99999988763 356676664 35666666778889999999999999 8999999999999999873
Q ss_pred ----CCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1786 ----DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1786 ----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
..++.+...+ .|.|.++..+|+|.|+|.|.|..|....++.+.|..
T Consensus 157 ~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~ 206 (217)
T 2vr9_A 157 SFGASSRVRIVDGG---NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206 (217)
T ss_dssp ---CCCSEEEETTT---EEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred ccccCCcEEecCCC---cEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence 3444444333 799999999999999999999999999887777765
No 132
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.84 E-value=1e-20 Score=211.84 Aligned_cols=187 Identities=24% Similarity=0.373 Sum_probs=149.6
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCC---eEEEEeCcee----EEEEcccccCCCeE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPD---FQIHTFSTKS----ILIMRQVFMEDSGV 1709 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~----~L~i~~v~~~DsG~ 1709 (1884)
..||.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..... .......++. .|.|.++..+|+|.
T Consensus 7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 86 (212)
T 2v9r_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86 (212)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence 4578899999999999999999999999999999999999998764321 1111111111 24556789999999
Q ss_pred EEEEEEeCCceE-EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEE-ecCCCcEEEEEeCCEecCCCC
Q psy2148 1710 FAVIAENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKNGKKIIPDI 1787 (1884)
Q Consensus 1710 Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~~~~l~~~~ 1787 (1884)
|+|.+.|..|.. ...+.|.|.. .+|.+...+....+..|+.++|.|.+ .|.|.|.++|+|++..+....
T Consensus 87 Y~C~~~n~~g~~~~~~~~l~V~~---------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~ 157 (212)
T 2v9r_A 87 YVCVARNYLGEAVSHDASLEVAI---------LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD 157 (212)
T ss_dssp EEEEEEETTEEEECCCEEEEECE---------ECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTS
T ss_pred EEEEEECCCCceeecceEEEEEe---------ccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCc
Confidence 999999998875 4567777764 24556666677889999999999999 899999999999999998765
Q ss_pred CeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEE-EEEEEEec
Q psy2148 1788 RYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCE-AELVVQSK 1835 (1884)
Q Consensus 1788 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~-~~l~V~~~ 1835 (1884)
+.....++ .|.|.++..+|+|.|+|.|.|..|..... +.|.|.++
T Consensus 158 ~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~ 203 (212)
T 2v9r_A 158 ERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER 203 (212)
T ss_dssp TTEEEETT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred ceEEccCC---eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeC
Confidence 44333443 89999999999999999999999987664 89999874
No 133
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.84 E-value=5.4e-20 Score=201.62 Aligned_cols=183 Identities=21% Similarity=0.379 Sum_probs=142.5
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccC--CCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA--GSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
+|.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|+|++..+.. ..++.+..++ .|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~ 76 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVS--SSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEG 76 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEE--CSSCCEEEEEC-----CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEEE
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEc--CCCCCEEEEEECCccceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEEE
Confidence 68899999999999999999999998 668889999999998863 4556554433 5999999999999999999
Q ss_pred EcCCeeEE--EEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCc
Q psy2148 994 TNKHGEAT--TSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGK 1071 (1884)
Q Consensus 994 ~N~~G~~~--~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~ 1071 (1884)
.|..+... ..+.|.|..+|.+...+. .....+.+|+.
T Consensus 77 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~-----------------------------------------~~~~~~~~g~~ 115 (189)
T 2v5t_A 77 RVEARGEIDFRDIIVIVNVPPAISMPQK-----------------------------------------SFNATAERGEE 115 (189)
T ss_dssp EETTTTEEEEEEEEEEEEEEEEEECSCC-----------------------------------------EEEEETTSCCC
T ss_pred EEcCCCceEEEEEEEEecCCCCcccccc-----------------------------------------cccccccCCCc
Confidence 99875433 456667765544321110 00245678999
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEee
Q psy2148 1072 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148 (1884)
Q Consensus 1072 ~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~ 1148 (1884)
+.|.|.+. +.|.+.+.|+++|..+..+.++...... ..|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 116 v~l~C~~~--g~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 116 MTFSCRAS--GSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp EEEECEEE--EESCCEEEEEETTEECCCSSSEEEETTT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEEc--cCCCCeEEEEECCEECcCCCcEEEecCC--CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 99999997 6788899999999999887776554433 3799999999999999999999999999999988763
No 134
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.84 E-value=1.2e-19 Score=199.28 Aligned_cols=182 Identities=19% Similarity=0.325 Sum_probs=143.7
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCC-CcEEEEee-CCEEcc-CCCcEEEEe-eCCeEEEEEccCCCCCCeEEEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDP-SMTVEWFH-NGKALS-AGSRIKTIN-DFGFVILEINDVYLRDSGLYTC 991 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P-~~~v~W~~-~g~~i~-~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C 991 (1884)
|+.|...+.+..+.+|+.++|.|.+. +.| .+.++|+| +|..+. ...++.+.. +.+...|.|.+++.+|+|.|+|
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~--~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEEC--CCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECC--CCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEE
Confidence 57788889999999999999999998 444 78999999 998887 455666543 3566789999999999999999
Q ss_pred EEEcCC-eeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCC
Q psy2148 992 KATNKH-GEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAG 1070 (1884)
Q Consensus 992 ~a~N~~-G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 1070 (1884)
.|.|.. +..+..+.|.|..+ |.+..... ...+.+|+
T Consensus 80 ~~~~~~~~~~~~~~~l~v~~~------------------------------------------p~~~~~~~-~~~~~~g~ 116 (191)
T 1epf_A 80 VVTAEDGTQSEATVNVKIFQK------------------------------------------LMFKNAPT-PQEFKEGE 116 (191)
T ss_dssp EEEETTTEEEEEEEEEEEECC------------------------------------------SEEEECCS-SEECCTTS
T ss_pred EEEcCCCcceEEEEEEEeecC------------------------------------------ceEecCCC-cEeecCCC
Confidence 999998 66777778888743 33333222 25678999
Q ss_pred cEEEEEEEeeCCCCCcEEEEEECCEeccCC--CceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1071 KVHFDCRLEPKSDPTMRIDWFFNGRPFATG--SRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1071 ~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
.+.|.|.+. +.|.+.|.|+|+|..+... .++... .++ .|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus 117 ~~~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 117 DAVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFIVL-SNN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190 (191)
T ss_dssp CEEECCEEE--CSSCCEEEEEETTEEGGGGCCTTEEEC-TTS--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred eEEEEEEEC--CCCCCEEEEEECCEEeeccCCceEEEe-cCC--eEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence 999999998 8899999999999998643 233332 233 69999999999999999999999866666555543
No 135
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.83 E-value=5.5e-20 Score=210.69 Aligned_cols=194 Identities=26% Similarity=0.431 Sum_probs=149.0
Q ss_pred CCCeeeec----CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcE---EEEeeCCeEEEEEccCCCCCCe
Q psy2148 915 KAPEFLTT----PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSG 987 (1884)
Q Consensus 915 ~~p~~~~~----~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~---~~~~~~~~~~L~I~~~~~~D~G 987 (1884)
.+|.|+.+ +..+.+.+|+++.|.|.+. +.|.+.|+|+|+|..+....++ .... +...|.|.+++.+|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G 85 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGREFRGEHRIGGIKLRH--QQWSLVMESVVPSDRG 85 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEE--CSSCCEEEEEETTEECCGGGSTTCCEEEG--GGTEEEECSCCGGGCE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEec--CCCCceeEEEECCcccCCCCcccceeeec--cceEEEEEeCCcccCE
Confidence 57777755 3568899999999999998 6788899999999999765433 2222 2337999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcC
Q psy2148 988 LYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVP 1067 (1884)
Q Consensus 988 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 1067 (1884)
.|+|.|.|..|..+..+.|.|...+. .+|.+.........+.
T Consensus 86 ~Y~C~~~~~~~~~~~~~~l~V~~~~~--------------------------------------~~~~~~~~~~~~~~~~ 127 (241)
T 3grw_A 86 NYTCVVENKFGSIRQTYTLDVLERSP--------------------------------------HRPILQAGLPANQTAV 127 (241)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECCCC--------------------------------------CCCEEEECTTCSEECC
T ss_pred EEEEEEeecCCceEEEEEEEEeccCC--------------------------------------CCceeecCCCccceec
Confidence 99999999999999999999975321 2344444444456788
Q ss_pred CCCcEEEEEEEeeCCCCCcEEEEEE----CCEeccCCCceEEEe--------eCcEEEEEEcccCcCCcEEEEEEEEcCC
Q psy2148 1068 EAGKVHFDCRLEPKSDPTMRIDWFF----NGRPFATGSRVKTVY--------DFGFISLDMDYVYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1068 ~g~~~~l~C~v~~~~~p~~~v~W~k----~~~~l~~~~~~~~~~--------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 1135 (1884)
+|+.+.|.|.+. +.|.+.+.|++ +|..+..+....... ......|.|.++..+|+|.|+|.|.|..
T Consensus 128 ~g~~v~L~C~~~--~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~ 205 (241)
T 3grw_A 128 LGSDVEFHCKVY--SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI 205 (241)
T ss_dssp TTCCEEEEEEEE--CSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred CCCEEEEEEEEe--cCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCc
Confidence 999999999997 78888999999 888886553322211 1134679999999999999999999999
Q ss_pred eeeEEEEEEEEeecccc
Q psy2148 1136 GTAMTKAKVICKAKHDI 1152 (1884)
Q Consensus 1136 G~~~~~~~l~v~~~~~~ 1152 (1884)
|..+.++.|.|..+|..
T Consensus 206 g~~~~~~~l~V~~~p~~ 222 (241)
T 3grw_A 206 GVAEKAFWLSVHGPRAA 222 (241)
T ss_dssp CEEEEEEEEEC------
T ss_pred ceEEEEEEEEecCCCCC
Confidence 99999999999877654
No 136
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=204.82 Aligned_cols=187 Identities=18% Similarity=0.225 Sum_probs=148.0
Q ss_pred eeeecCCceeecCCCeEEEEEE-EeccCC-CeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCC
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVE-FDGDPL-PTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 1718 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~-~~g~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~ 1718 (1884)
.+...+..+.+.+|+.+.|.|. +.|.|. +.+.|++++..+...............+|.|.++..+|+|.|+|.+.|..
T Consensus 10 ~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 89 (201)
T 3s97_C 10 FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPS 89 (201)
T ss_dssp CCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred cCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecC
Confidence 3344557789999999999999 899999 99999999987754333344444556789999999999999999999976
Q ss_pred ceEEE---EEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecC
Q psy2148 1719 GKAKC---SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEED 1795 (1884)
Q Consensus 1719 g~~~~---~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~ 1795 (1884)
+.... ...+.+..... ....+|.+...+....+..|+.++|.|.+.|.|.|.|.|+|++..+.... .+...+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~~~~~ 164 (201)
T 3s97_C 90 ITKSVFSKFIPLIPIPERT---TKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EISTSG 164 (201)
T ss_dssp GTEEEECCCEEEEEECCSS---CCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC--EEETTT
T ss_pred CCcchhhcccceeeccccc---cCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce--eecCCC
Confidence 65543 23444432111 11146778777778899999999999999999999999999999876543 233333
Q ss_pred CeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1796 NLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1796 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
. .|.|.++..+|+|.|+|.|.|..|..+.++.|.|++
T Consensus 165 ~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~a 201 (201)
T 3s97_C 165 A--VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201 (201)
T ss_dssp T--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred C--EEEEccCChhhCEEEEEEEEecCCceeeeEEEEEeC
Confidence 3 899999999999999999999999999999999863
No 137
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.83 E-value=5.6e-20 Score=209.15 Aligned_cols=197 Identities=26% Similarity=0.403 Sum_probs=151.6
Q ss_pred CCCCeeeecC----CceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEE-EeeCCeEEEEEccCCCCCCeE
Q psy2148 914 GKAPEFLTTP----TDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKT-INDFGFVILEINDVYLRDSGL 988 (1884)
Q Consensus 914 ~~~p~~~~~~----~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~ 988 (1884)
..+|.|+..+ ....+.+|+++.|.|.+. +.|.+.|+|+|+|..+....++.. ....+...|.|.+++.+|+|.
T Consensus 13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 90 (231)
T 3ojm_B 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 90 (231)
T ss_dssp CEEEEESCGGGGCCSCEEEETTSCEEEECCEE--EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEE
T ss_pred ccCCccccccccCceeEEEccCCCEEEEEecc--cCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEE
Confidence 4578887666 788999999999999998 568889999999999976554311 112223479999999999999
Q ss_pred EEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCC
Q psy2148 989 YTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPE 1068 (1884)
Q Consensus 989 Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 1068 (1884)
|+|.|.|..|..+..+.|.|...+. .+|.+.........+.+
T Consensus 91 Y~C~~~n~~~~~~~~~~l~V~~~~~--------------------------------------~~p~~~~~~~~~~~~~~ 132 (231)
T 3ojm_B 91 YTCVVENEYGSINHTYHLDVVERSR--------------------------------------HRPILQAGLPANASTVV 132 (231)
T ss_dssp EEEEEEETTEEEEEEEEEEEECCCC--------------------------------------CCCEECTTCSCCEEEET
T ss_pred EEEEEecccCcccccEEEEEEcCCC--------------------------------------CCCceeeccCCceEEEe
Confidence 9999999999999999999975432 22333333333466788
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEE----CCEeccCCCceEE--Eee-----CcEEEEEEcccCcCCcEEEEEEEEcCCee
Q psy2148 1069 AGKVHFDCRLEPKSDPTMRIDWFF----NGRPFATGSRVKT--VYD-----FGFISLDMDYVYARDSGEYICRATNKWGT 1137 (1884)
Q Consensus 1069 g~~~~l~C~v~~~~~p~~~v~W~k----~~~~l~~~~~~~~--~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~ 1137 (1884)
|+.+.|.|.+. +.|.+.+.|++ +|..+..+..... ... .....|.|.++..+|+|.|+|.|.|..|.
T Consensus 133 g~~~~l~C~~~--~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 210 (231)
T 3ojm_B 133 GGDVEFVCKVY--SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210 (231)
T ss_dssp TCCEEEECCEE--CSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CCcEEEEEEEe--cCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccce
Confidence 99999999997 78888999999 8888765433221 111 11246999999999999999999999999
Q ss_pred eEEEEEEEEeecccc
Q psy2148 1138 AMTKAKVICKAKHDI 1152 (1884)
Q Consensus 1138 ~~~~~~l~v~~~~~~ 1152 (1884)
.+.++.|.|..+|..
T Consensus 211 ~~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 211 ANQSAWLTVLPKQQA 225 (231)
T ss_dssp EEEEEEEEEECCC--
T ss_pred EeeEEEEEEecCCCC
Confidence 999999999876653
No 138
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.83 E-value=3.7e-20 Score=207.35 Aligned_cols=180 Identities=20% Similarity=0.296 Sum_probs=142.5
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeec------------CCCCCeEEEEeCceeEEEEcccccCC
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI------------TSSPDFQIHTFSTKSILIMRQVFMED 1706 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~D 1706 (1884)
|..|...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+ ....++.+. . ..|.|.++..+|
T Consensus 1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~--~~L~i~~v~~~D 76 (212)
T 1f97_A 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS--S--SGITFSSVTRKD 76 (212)
T ss_dssp CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE--T--TEEEESCCCGGG
T ss_pred CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee--c--eeEEEcccCccc
Confidence 356677788899999999999999999999999999988652 112333322 2 779999999999
Q ss_pred CeEEEEEEEeCCc--eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEE-EecCCCcEEEEEeCCE-e
Q psy2148 1707 SGVFAVIAENRGG--KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAK-ISATKPLDVYWLKNGK-K 1782 (1884)
Q Consensus 1707 sG~Y~C~a~n~~g--~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~-~~g~p~p~v~W~k~~~-~ 1782 (1884)
+|.|+|.|.|..| .....+.|.|.. +|.+...+....+.+|+.++|.|. +.|.|.|.+.|+|++. .
T Consensus 77 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~ 146 (212)
T 1f97_A 77 NGEYTCMVSEEGGQNYGEVSIHLTVLV----------PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISM 146 (212)
T ss_dssp CEEEEEEEEETTSSSEEEEEEEEEEEB----------CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEES
T ss_pred CeEEEEEEEccCCCcccEEEEEEEEEc----------CCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccc
Confidence 9999999999977 567788888884 555555556678899999999999 7999999999999999 8
Q ss_pred cCCCCC---------eEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeE--EEEEEEEEEe
Q psy2148 1783 IIPDIR---------YKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEA--RCEAELVVQS 1834 (1884)
Q Consensus 1783 l~~~~~---------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l~V~~ 1834 (1884)
+....+ +.+. .....|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus 147 l~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 147 LTADAKKTRAFMNSSFTID--PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp BC-----CBSCSSSCEEEC--TTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ccccccccccccCceeEec--CCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 865433 2222 223489999999999999999999999988 4556666664
No 139
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=201.87 Aligned_cols=181 Identities=14% Similarity=0.199 Sum_probs=149.8
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEe
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n 1716 (1884)
...+.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+... ....|.|.++..+|+|.|+|.+.|
T Consensus 16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n 86 (218)
T 3k0w_A 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG---------NTSELIFNAVHVKDAGFYVCRVNN 86 (218)
T ss_dssp ---CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC---------CSSEEEETTCCGGGCEEEEEEEEC
T ss_pred CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC---------CCCEEEEccCChhhCeEeEEEEEc
Confidence 45678888999999999999999999999999999999999987654 345799999999999999999999
Q ss_pred CCceE-EEEEEEEEEecccCCC-----CCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeE
Q psy2148 1717 RGGKA-KCSANLVVEEKRQGGR-----GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYK 1790 (1884)
Q Consensus 1717 ~~g~~-~~~~~l~V~~~~~~~~-----~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~ 1790 (1884)
..|.. ...+.|.|...+.... ....+|.+...+....+..|+.++|.|.+.|.|.|.+.|+|++..+....+
T Consensus 87 ~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~-- 164 (218)
T 3k0w_A 87 NFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-- 164 (218)
T ss_dssp TTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS--
T ss_pred CCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC--
Confidence 97754 5568888875421100 001247888888899999999999999999999999999999998865532
Q ss_pred EeecCCeEEEEEccCCCCCCEEEEEEEEeCCee-EEEEEEEEEEec
Q psy2148 1791 TLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGE-ARCEAELVVQSK 1835 (1884)
Q Consensus 1791 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~ 1835 (1884)
..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|.+.
T Consensus 165 -------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 203 (218)
T 3k0w_A 165 -------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203 (218)
T ss_dssp -------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred -------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence 27999999999999999999999987 566788888763
No 140
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.82 E-value=3.1e-19 Score=194.35 Aligned_cols=167 Identities=17% Similarity=0.218 Sum_probs=139.0
Q ss_pred ceeecCCCeEEEEEEEeccCCC--eEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEE
Q psy2148 1648 PCRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSA 1725 (1884)
Q Consensus 1648 ~~~v~~G~~~~l~C~~~g~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~ 1725 (1884)
...+.+|+.+.|.|.+.|.|.| .+.|+|+|..+...... .....|.|. ..+|+|.|+|.|.|.. ...+
T Consensus 7 ~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~ 76 (184)
T 3b5h_A 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTA 76 (184)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEESTT---SCEE
T ss_pred EEEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECCc---CcEE
Confidence 3567899999999999998877 99999999988665432 223457777 6899999999999832 3566
Q ss_pred EEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCC-CcEEEEEe---CC-EecCCC--CCeEEeecCCeE
Q psy2148 1726 NLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATK-PLDVYWLK---NG-KKIIPD--IRYKTLEEDNLF 1798 (1884)
Q Consensus 1726 ~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~k---~~-~~l~~~--~~~~~~~~~~~~ 1798 (1884)
.|.|. .+|.+...+....+.+|+.++|.|.+.|.| .|.|.|+| ++ ..+... .++.+...+...
T Consensus 77 ~l~V~----------~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T 3b5h_A 77 NIQLH----------GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRS 146 (184)
T ss_dssp EEEEC----------CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEE
T ss_pred EEEEe----------cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCee
Confidence 78886 578888888888899999999999999999 79999999 44 444332 678888878888
Q ss_pred EEEEccCC-CCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1799 TLLIIEAV-VEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1799 ~L~i~~~~-~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
.|.|.++. .+|+|.|+|.|.|..|....++.|.|.+
T Consensus 147 ~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 147 ELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp EEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 99999999 9999999999999999999999999875
No 141
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.82 E-value=6.4e-20 Score=206.12 Aligned_cols=187 Identities=26% Similarity=0.445 Sum_probs=141.9
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCC--cEEEEeeCC--eEEEEEccCCCCCCeEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS--RIKTINDFG--FVILEINDVYLRDSGLY 989 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~--~~~~~~~~~--~~~L~I~~~~~~D~G~Y 989 (1884)
..+|.|+..+.++.+.+|+++.|.|.+. +.|.+.|+|+|+|..+.... ...+...++ ...|.|.+++.+|+|.|
T Consensus 7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~--g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 84 (217)
T 2vr9_A 7 YQSPRIIEHPTDLVVKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84 (217)
T ss_dssp CCCCEEEECCCCEEECTTSCEEECCEEE--CSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred cCCCEEecCCCceEEeCCCcEEEEEEcC--CCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence 3789999999999999999999999998 67888999999999997642 222222222 22347899999999999
Q ss_pred EEEEEcCCeeEE-EEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCC
Q psy2148 990 TCKATNKHGEAT-TSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPE 1068 (1884)
Q Consensus 990 ~C~a~N~~G~~~-~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 1068 (1884)
+|.|.|..|... ..+.|.|...+ |.+..... ...+.+
T Consensus 85 ~C~~~n~~g~~~~~~~~l~v~~~~-----------------------------------------~~~~~~~~-~~~~~~ 122 (217)
T 2vr9_A 85 WCVAKNRVGQAVSRHASLQIAVLR-----------------------------------------DDFRVEPK-DTRVAK 122 (217)
T ss_dssp EEEEEETTEEEECCCEEEEECEEC-----------------------------------------CSCSBCCC-CEEECT
T ss_pred EEEEecCCCccccccceEEEEEeC-----------------------------------------CCcEECCC-ccEEcC
Confidence 999999999763 35677775421 11111111 255778
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEECCEeccCC--------CceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEE
Q psy2148 1069 AGKVHFDCRLEPKSDPTMRIDWFFNGRPFATG--------SRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMT 1140 (1884)
Q Consensus 1069 g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~ 1140 (1884)
|+.+.|.|.+. .+.|.+.|.|+|+|..+... .++... ..+ .|.|.++..+|+|.|+|.|.|..|...+
T Consensus 123 g~~v~l~C~~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~-~~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~ 198 (217)
T 2vr9_A 123 GETALLECGPP-KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV-DGG--NLLISNVEPIDEGNYKCIAQNLVGTRES 198 (217)
T ss_dssp TSCEEECCBCC-CEESCCEEEEEETTEEECCCCCC---CCCSEEEE-TTT--EEEESSCCSTTCEEEEEEEEETTEEEEC
T ss_pred CCeEEEEEECC-CCCCCCeEEEEECCcCCCcccccccccCCcEEec-CCC--cEEEeeCCHHHCeEEEEEEEcccceecc
Confidence 99999999983 27788999999999998733 333222 222 6999999999999999999999999988
Q ss_pred EEEEEEee
Q psy2148 1141 KAKVICKA 1148 (1884)
Q Consensus 1141 ~~~l~v~~ 1148 (1884)
+..+.+..
T Consensus 199 ~~~~lv~~ 206 (217)
T 2vr9_A 199 SYAKLIVQ 206 (217)
T ss_dssp CCEEEEEC
T ss_pred ccEEEEEE
Confidence 76666553
No 142
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.81 E-value=1.8e-19 Score=199.61 Aligned_cols=182 Identities=11% Similarity=0.023 Sum_probs=138.3
Q ss_pred eeecCCceeecCCCeEEEEEEEeccCC-----CeEEEEe-CCeecCCCCCeEEEEe---CceeEEEEcccccCCCeEEEE
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDPL-----PTIKWFR-EDFPITSSPDFQIHTF---STKSILIMRQVFMEDSGVFAV 1712 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p~-----~~i~W~~-~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~DsG~Y~C 1712 (1884)
+......+.+.+|+++.|.|.+.+.|. +.+.|+| ++.......++.+... ....+|.|.+++.+|+|.|.|
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 84 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRC 84 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEE
T ss_pred EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEE
Confidence 344456788999999999999999986 8999999 5544444445444322 145789999999999999999
Q ss_pred EEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEe
Q psy2148 1713 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTL 1792 (1884)
Q Consensus 1713 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~ 1792 (1884)
.+.|..|.....+.|.|...+ ..|.+.. ..+.+|+.++|.|.+.|.|.|.|.|++++..+. ......
T Consensus 85 ~~~~~~~~~~~~~~l~V~~~~-------~~p~~~~----~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~--~~~~~~ 151 (202)
T 3bp6_B 85 LVICGAAWDYKYLTVKVKASY-------MRIDTRI----LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPAN--TSHIRT 151 (202)
T ss_dssp EEEETTEEEEEEEEEEEEBCC-------CCEEEEE----EECTTTCCEEEEEEEEEBSCCEEEETTCCSCCE--EEEEEC
T ss_pred EEEeCCCcceEEEEEEecCCC-------CcccEEE----EecCCCCeEEEEEEccccCCceEEEEeCCCCcc--CceeeC
Confidence 999999988889999998533 2344432 245689999999999999999999999987552 122222
Q ss_pred ecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecC
Q psy2148 1793 EEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1793 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
.++....+.|.++..+|.|.|+|.|.|..|....++.|.|.++.
T Consensus 152 ~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~~~ 195 (202)
T 3bp6_B 152 PEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRM 195 (202)
T ss_dssp TTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC----
T ss_pred CCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecCcC
Confidence 33445678888999999999999999999999999999987643
No 143
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.81 E-value=1.1e-19 Score=203.47 Aligned_cols=190 Identities=23% Similarity=0.426 Sum_probs=142.9
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCC-----cEEEEeeCCeE--EEEEccCCCCCCe
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS-----RIKTINDFGFV--ILEINDVYLRDSG 987 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~-----~~~~~~~~~~~--~L~I~~~~~~D~G 987 (1884)
.||.|...+.++.+.+|+.+.|.|.+. +.|.+.|+|+|+|..+.... +......+... .|.|.+++.+|+|
T Consensus 8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 85 (212)
T 2v9r_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG 85 (212)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEE--EESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred CCcceecCCCceEEeCCCcEEEEEEcC--CCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence 589999999999999999999999998 56788999999999986543 12222333322 2456788999999
Q ss_pred EEEEEEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCc
Q psy2148 988 LYTCKATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDV 1066 (1884)
Q Consensus 988 ~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 1066 (1884)
.|+|.|.|..|.. +..+.|.|...+. .+.... ....+
T Consensus 86 ~Y~C~~~n~~g~~~~~~~~l~V~~~~~-----------------------------------------~~~~~~-~~~~~ 123 (212)
T 2v9r_A 86 VYVCVARNYLGEAVSHDASLEVAILRD-----------------------------------------DFRQNP-SDVMV 123 (212)
T ss_dssp EEEEEEEETTEEEECCCEEEEECEECS-----------------------------------------SCSBCC-CCEEE
T ss_pred EEEEEEECCCCceeecceEEEEEeccc-----------------------------------------cceeCC-CceEe
Confidence 9999999999876 4567777764321 111111 12457
Q ss_pred CCCCcEEEEEEE-eeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEE-EEE
Q psy2148 1067 PEAGKVHFDCRL-EPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTK-AKV 1144 (1884)
Q Consensus 1067 ~~g~~~~l~C~v-~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~-~~l 1144 (1884)
.+|+.+.|.|.+ . +.|.+.|.|+++|..+..+....... ++ .|.|.++..+|+|.|+|.|.|..|...+. +.|
T Consensus 124 ~~g~~~~l~C~~~~--~~p~~~v~W~~~~~~l~~~~~~~~~~-~~--~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l 198 (212)
T 2v9r_A 124 AVGEPAVMECQPPR--GHPEPTISWKKDGSPLDDKDERITIR-GG--KLMITYTRKSDAGKYVCVGTNMVGERESEVAEL 198 (212)
T ss_dssp ETTSCEEEECBCCC--EESCCEEEEEETTEEECTTSTTEEEE-TT--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred cCCCcEEEEEecCC--CCCCCEEEEEECCccCCCCcceEEcc-CC--eEEEeeCCHhhCeeEEEEEecccCceecceEEE
Confidence 789999999998 5 77889999999999998654433332 33 79999999999999999999999987764 899
Q ss_pred EEeeccccc
Q psy2148 1145 ICKAKHDIV 1153 (1884)
Q Consensus 1145 ~v~~~~~~~ 1153 (1884)
.|..+|.+.
T Consensus 199 ~V~~~P~~~ 207 (212)
T 2v9r_A 199 TVLERPSFV 207 (212)
T ss_dssp EEEC-----
T ss_pred EEEeCchHh
Confidence 998877654
No 144
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.81 E-value=2e-19 Score=198.10 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=135.9
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeccCCCe-EEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEe
Q psy2148 1638 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716 (1884)
Q Consensus 1638 ~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n 1716 (1884)
..|.+...+....+.+|+.+.|.|.+.|.|.+. +.|+|+|..+.... ..|.|.+++.+|+|.|+|.+.|
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n 75 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQL 75 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETT
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCC
Confidence 456777777778999999999999999998876 99999999876542 6799999999999999999987
Q ss_pred CCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCcEEEEEeCCEecCCCCCeEEeecC
Q psy2148 1717 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPLDVYWLKNGKKIIPDIRYKTLEED 1795 (1884)
Q Consensus 1717 ~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~k~~~~l~~~~~~~~~~~~ 1795 (1884)
. ..+..+.|.|.. +|.+...+. ..+.+|+.++|.|.+.+. |.+.|.|+|+|..+.. ....
T Consensus 76 ~--~~s~~~~l~V~~----------~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~------~~~~ 136 (204)
T 3sgj_C 76 S--TLSDPVQLEVHI----------GWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY------FHHN 136 (204)
T ss_dssp S--BCCCCEEEEEEC----------SSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE------EEEC
T ss_pred C--cccccEEEEEec----------CceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec------ccCC
Confidence 4 455567888873 565555444 778899999999999665 6689999999998632 1112
Q ss_pred CeEEEEEccCCCCCCEEEEEEEEe-CCeeEEEEEEEEEEecCC
Q psy2148 1796 NLFTLLIIEAVVEDSGAYECVAMN-NAGEARCEAELVVQSKKA 1837 (1884)
Q Consensus 1796 ~~~~L~i~~~~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~~~ 1837 (1884)
..|.|.++..+|+|.|+|.|.| ..+..+..+.|.|.+.+.
T Consensus 137 --~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~ 177 (204)
T 3sgj_C 137 --SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177 (204)
T ss_dssp --CCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred --ceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence 2799999999999999999999 556667788999987553
No 145
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=197.55 Aligned_cols=184 Identities=10% Similarity=0.032 Sum_probs=138.5
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeC
Q psy2148 1638 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 1717 (1884)
Q Consensus 1638 ~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~ 1717 (1884)
.+|.+...+.. .+.+|++++|.|.+.| |.+.+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRSP 80 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEE-CCCSSSSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccc-ccccCCceEEEEeccCCcccCceEEEEEeCC
Confidence 46788877777 8899999999999998 7889999999987653210 0111145678999999999999999999999
Q ss_pred Cce--EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCe-EEeec
Q psy2148 1718 GGK--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRY-KTLEE 1794 (1884)
Q Consensus 1718 ~g~--~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~-~~~~~ 1794 (1884)
.|. .+..+.|.|.... .+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+|+|..+...... .....
T Consensus 81 ~g~~~~s~~~~l~V~~~~-------~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~ 151 (196)
T 3p2t_A 81 VGWSQPSDPLELVMTGAY-------SKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQ 151 (196)
T ss_dssp TEEBCCCCCEEEEEECSS-------CCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEE
T ss_pred CcccCCCccEEEEecCCC-------CCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccccccc
Confidence 883 4556778887532 36777766554 78899999999999884 5689999999877543321 11122
Q ss_pred CCeEEEEEccCCCCCCEEEEEEEEeCCe-----eEEEEEEEEEE
Q psy2148 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAG-----EARCEAELVVQ 1833 (1884)
Q Consensus 1795 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V~ 1833 (1884)
.....|.|.++..+|+|.|+|.|.|..+ ..+..+.|.|.
T Consensus 152 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 195 (196)
T 3p2t_A 152 QHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS 195 (196)
T ss_dssp EEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred CcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence 2345899999999999999999999987 23334555553
No 146
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.80 E-value=3.2e-19 Score=199.76 Aligned_cols=181 Identities=24% Similarity=0.337 Sum_probs=137.1
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEc------------cCCCcEEEEeeCCeEEEEEccCCC
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKAL------------SAGSRIKTINDFGFVILEINDVYL 983 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~ 983 (1884)
|+.|...+.++.+.+|+++.|.|.+. +.|.+.|.|+|++..+ ....++.+.. ..|.|.+++.
T Consensus 1 ~~~v~~~~~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~ 74 (212)
T 1f97_A 1 KGSVYTAQSDVQVPENESIKLTCTYS--GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTR 74 (212)
T ss_dssp CCEEECSCSEEEEETTCCEEEECEEE--SCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCG
T ss_pred CceEEecCCCeEEEcCCCEEEEeEeC--CCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCc
Confidence 35677788899999999999999998 6688999999988663 2345555443 3799999999
Q ss_pred CCCeEEEEEEEcCCe--eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecC
Q psy2148 984 RDSGLYTCKATNKHG--EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQ 1061 (1884)
Q Consensus 984 ~D~G~Y~C~a~N~~G--~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1061 (1884)
+|+|.|+|.|.|..| ..+..+.|.|..+|.++ ....
T Consensus 75 ~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~------------------------------------------~~~~ 112 (212)
T 1f97_A 75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP------------------------------------------TISV 112 (212)
T ss_dssp GGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCC------------------------------------------EEEC
T ss_pred ccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCc------------------------------------------ccCC
Confidence 999999999999977 66778888887554322 1111
Q ss_pred CCcCcCCCCcEEEEEE-EeeCCCCCcEEEEEECCE-eccCCCce-------EEEeeCcEEEEEEcccCcCCcEEEEEEEE
Q psy2148 1062 DNLDVPEAGKVHFDCR-LEPKSDPTMRIDWFFNGR-PFATGSRV-------KTVYDFGFISLDMDYVYARDSGEYICRAT 1132 (1884)
Q Consensus 1062 ~~~~v~~g~~~~l~C~-v~~~~~p~~~v~W~k~~~-~l~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 1132 (1884)
...+.+|+.+.|.|. +. +.|.+.|.|+|+|. .+..+... ..........|.|.++..+|+|.|+|.|.
T Consensus 113 -~~~~~~g~~~~l~C~~~~--~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 189 (212)
T 1f97_A 113 -PSSVTIGNRAVLTCSEHD--GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189 (212)
T ss_dssp -CSEEETTSCEEEEEECSC--CBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEE
T ss_pred -ccccCCCCeEEEEEEccc--CcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEc
Confidence 145678999999999 54 88999999999999 88754331 11122233479999999999999999999
Q ss_pred cCCeeeE--EEEEEEEe
Q psy2148 1133 NKWGTAM--TKAKVICK 1147 (1884)
Q Consensus 1133 n~~G~~~--~~~~l~v~ 1147 (1884)
|..|... ..+.|.|.
T Consensus 190 n~~g~~~~s~~~~l~V~ 206 (212)
T 1f97_A 190 NGYGTAMRSEAAHMDAV 206 (212)
T ss_dssp CSSSCCEECCCEEEEEE
T ss_pred cccCCccccceEEEEEE
Confidence 9999884 44555554
No 147
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.80 E-value=9.1e-19 Score=196.24 Aligned_cols=185 Identities=18% Similarity=0.344 Sum_probs=144.1
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
...+.|+..+.++.+.+|+++.|.|.+. +.|.+.|+|+|+|..+..+.. ..|.|.+++.+|+|.|+|.|
T Consensus 16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~~ 84 (218)
T 3k0w_A 16 PRGSKITVNPESKAVLAGQFVKLCCRAT--GHPFVQYQWFKMNKEIPNGNT---------SELIFNAVHVKDAGFYVCRV 84 (218)
T ss_dssp ---CCEEECCCCEEEETTSBEEEECEET--TTTSSEEEEEETTEECTTCCS---------SEEEETTCCGGGCEEEEEEE
T ss_pred CCCCEEEECCCCeEEeCCCcEEEEeeec--CCCCCEEEEEECCEECCCCCC---------CEEEEccCChhhCeEeEEEE
Confidence 3578899999999999999999999997 778889999999999876532 26999999999999999999
Q ss_pred EcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 994 TNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 994 ~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
.|..|.. +..+.|.|...+...... .......+|.+...... ..+.+|+.+
T Consensus 85 ~n~~~~~~s~~~~l~V~~~~~~~~~~---------------------------~~~~~~~~p~~~~~~~~-~~v~~G~~v 136 (218)
T 3k0w_A 85 NNNFTFEFSQWSQLDVCDIPESFQRS---------------------------VDGVSESKLQICVEPTS-QKLMPGSTL 136 (218)
T ss_dssp ECTTCCEECCCEEEEEECCCGGGCTT---------------------------CCSBCCSSCEEEECCCC-EEECTTCCE
T ss_pred EcCCCCceeeEEEEEEEccCcccccc---------------------------cccccCCCceEEECCCc-eeecCCCcE
Confidence 9998865 556788887643211000 00001133555544433 678899999
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCee-eEEEEEEEEee
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT-AMTKAKVICKA 1148 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~-~~~~~~l~v~~ 1148 (1884)
.|.|.+. +.|.+.|.|+++|..+..+.. ..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus 137 ~L~C~~~--g~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 137 VLQCVAV--GSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp EEECEEE--BSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred EEEEEec--ccCCCeEEEEECCEECCCCCC---------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 9999997 788999999999999876532 26999999999999999999999997 45567777765
No 148
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.80 E-value=1.4e-19 Score=203.00 Aligned_cols=177 Identities=18% Similarity=0.232 Sum_probs=136.1
Q ss_pred ecCCceeecCCCeEEEEEEEeccC----CCeEEEEe----------------CCeecCC-----CCCeEEEE---eCcee
Q psy2148 1644 KKIQPCRAFEQDQARFEVEFDGDP----LPTIKWFR----------------EDFPITS-----SPDFQIHT---FSTKS 1695 (1884)
Q Consensus 1644 ~~~~~~~v~~G~~~~l~C~~~g~p----~~~i~W~~----------------~~~~~~~-----~~~~~~~~---~~~~~ 1695 (1884)
.....+.+.+|+++.|.|.+.+.| .+.+.|++ ++..+.. ..++.+.. .....
T Consensus 5 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 84 (214)
T 3jz7_A 5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDA 84 (214)
T ss_dssp -CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBC
T ss_pred cCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcc
Confidence 344567899999999999999887 46999998 4444332 22333221 12457
Q ss_pred EEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEE-ecCCCcEE
Q psy2148 1696 ILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDV 1774 (1884)
Q Consensus 1696 ~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v 1774 (1884)
+|.|.+++.+|+|.|.|.+.|..|.....+.|.|.. +|.+...+....+..|+.++|.|.+ .|.|.|.|
T Consensus 85 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v 154 (214)
T 3jz7_A 85 SINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV----------KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQF 154 (214)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC----------CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEE
T ss_pred cEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEc----------CCCCceeeeecceecCCcEEEEecCCCCCCCCEE
Confidence 799999999999999999999999999999999985 4444433344457899999999999 89999999
Q ss_pred EEEeCCE--ecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1775 YWLKNGK--KIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1775 ~W~k~~~--~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
.|+|++. .+..... ....++ .|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 155 ~W~~~~~~~~~~~~~~--~~~~~~--~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 212 (214)
T 3jz7_A 155 EWQKLSDSQTMPTPWL--AEMTSP--VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212 (214)
T ss_dssp EEEECSTTCCCCGGGG--GGTTSS--EEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred EEEECCCCCccCccce--eccCCC--EEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence 9999643 3322211 111222 899999999999999999999999999999999874
No 149
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.79 E-value=4.2e-19 Score=198.02 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=130.3
Q ss_pred cCCceeecCC--CeEEEEEEEeeCCCCCcEEEEee---CCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcC
Q psy2148 922 TPTDLTLAES--TLAHFECRLTPTNDPSMTVEWFH---NGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNK 996 (1884)
Q Consensus 922 ~~~~~~v~~G--~~v~l~C~v~~~~~P~~~v~W~~---~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 996 (1884)
.+.++.+.+| ++++|.|.+. + |.+.|+|++ ||..+..+.++.....+ .|.|.+++.+|+|.|+|.|.|.
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~--~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~---~l~I~~v~~~D~G~Y~C~a~n~ 86 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGS--I-SNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISYAGMVFCEAKIN 86 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBS--S-TTCCEEEEEETTTEEECCCSSSCEEETTT---EEEEEGGGTTTCSEEEEEEC--
T ss_pred CceEEEEecCCCccEEEeeccC--C-CCcEEEEEhhcCCCccccCCCcccccCCc---cEEEccCChhcCceEEEEEEEC
Confidence 3467899999 9999999997 4 668999988 47777766555443332 5999999999999999999996
Q ss_pred CeeEEE-EEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEE
Q psy2148 997 HGEATT-SCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFD 1075 (1884)
Q Consensus 997 ~G~~~~-~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~ 1075 (1884)
.+.... .+.|.|... .+|.+.......+.+.+|++++|.
T Consensus 87 ~~~~~s~~~~l~v~~~----------------------------------------~~p~~~~~~~~~~~v~~G~~v~L~ 126 (213)
T 2x1w_L 87 DESYQSIMYIVVVVGY----------------------------------------RIYDVVLSPSHGIELSVGEKLVLN 126 (213)
T ss_dssp --CEECCCEEEEECBC----------------------------------------CEEEEEEESCSCEEEETTCCEEEE
T ss_pred CeeEEEEEEEEEEeCC----------------------------------------cccceEEcCCCCeEEcCCCCEEEE
Confidence 554332 256666421 123333333333578899999999
Q ss_pred EEEeeCCCCCcEEEEEECCEeccCCCc-eEEE-e------eCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1076 CRLEPKSDPTMRIDWFFNGRPFATGSR-VKTV-Y------DFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1076 C~v~~~~~p~~~v~W~k~~~~l~~~~~-~~~~-~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
|.+.+...+.+.|.|+++|..+..... .... . ......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 127 C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 206 (213)
T 2x1w_L 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206 (213)
T ss_dssp EEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEe
Confidence 999844455568999999987643211 1010 0 1224579999999999999999999999999999999998
Q ss_pred ecccc
Q psy2148 1148 AKHDI 1152 (1884)
Q Consensus 1148 ~~~~~ 1152 (1884)
.+|.+
T Consensus 207 ~~p~i 211 (213)
T 2x1w_L 207 EDPIE 211 (213)
T ss_dssp C----
T ss_pred ccccc
Confidence 76643
No 150
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=198.86 Aligned_cols=175 Identities=8% Similarity=-0.017 Sum_probs=122.8
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEe
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n 1716 (1884)
..+|.|...+.. .+.+|++++|.|.+.|.|. .+.|+|+|..+....+ ..........|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (196)
T 2d3v_A 3 LSKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYS 79 (196)
T ss_dssp CCBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeC
Confidence 356788777764 7899999999999998876 9999999987643211 001124567899999999999999999999
Q ss_pred CCceE--EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCe-EEee
Q psy2148 1717 RGGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRY-KTLE 1793 (1884)
Q Consensus 1717 ~~g~~--~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~-~~~~ 1793 (1884)
..|.. +..+.|.|.... .+|.+...+ ...+.+|++++|.|.+.+.| +.+.|+|+|..+...... ....
T Consensus 80 ~~g~~~~s~~~~l~V~~~~-------~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~ 150 (196)
T 2d3v_A 80 PAGWSEPSDPLELVVTGFY-------NKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTP 150 (196)
T ss_dssp TTEECBCCCCEEEEEECSS-------CCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECT
T ss_pred CCCcCCcCccEEEEecCCC-------CCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCccccccccccccc
Confidence 87753 355778887532 267776554 35788999999999999998 899999999887532211 1111
Q ss_pred -cCCeEEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1794 -EDNLFTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1794 -~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
......|.|.+++.+|+|.|+|.|.|..+.
T Consensus 151 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 181 (196)
T 2d3v_A 151 SGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181 (196)
T ss_dssp TSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred CCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence 223469999999999999999999998764
No 151
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.79 E-value=2e-19 Score=207.64 Aligned_cols=217 Identities=16% Similarity=0.201 Sum_probs=132.0
Q ss_pred eccCCCeEEEEEEEecCcceEEEEEEEEeCCCccccccCCCccchhHHHHHHhhcccccCCccccccCCCCCCCeEecCC
Q psy2148 1490 VYPEDSGEYLCRATNLYGMDETRAILKTTGKPGIIYESQLPKGMKSIEKIREMEASWQHTPEQLVEDEKPKEAPVFVSQP 1569 (1884)
Q Consensus 1490 ~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 1569 (1884)
++.+|+|.|+|.|. |.......+.+. .+|.+...+
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~------------------------------------------~~~~~~~~p 45 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNWL------------------------------------------RELVMTQSP 45 (254)
T ss_dssp ------------------------------------------------------------------------CCCEEEEC
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhhee------------------------------------------eceeEEeCC
Confidence 57899999999998 444343333321 145677778
Q ss_pred cccccccCCceEEEEEEecCC-----CCeEEEEEcC--EEeeeeeEEEEeeccceeeeecceeeEEEEecCCCCCCCCee
Q psy2148 1570 EAQKVQEGEPARFCTRVTGYP-----RPRVMWLING--HTIVNEIVRKITATETTEMEHKGKIQERVVDASEKPAKPPVF 1642 (1884)
Q Consensus 1570 ~~~~v~~g~~~~l~C~~~g~p-----~~~v~W~~~g--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1642 (1884)
..+.+.+|++++|.|.+.|.| .+.+.|++++ ..+..
T Consensus 46 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~------------------------------------- 88 (254)
T 2c1o_A 46 LTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKR------------------------------------- 88 (254)
T ss_dssp SEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEE-------------------------------------
T ss_pred ceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceE-------------------------------------
Confidence 888999999999999999988 4899999743 21100
Q ss_pred eecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC-eecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceE
Q psy2148 1643 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED-FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKA 1721 (1884)
Q Consensus 1643 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~ 1721 (1884)
.. +..+ .......++.+...+...+|.|.+++.+|+|.|.|.|.|..+..
T Consensus 89 ~~-----------------------------~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~ 139 (254)
T 2c1o_A 89 LI-----------------------------YLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPT 139 (254)
T ss_dssp EE-----------------------------ETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCE
T ss_pred EE-----------------------------EeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceE
Confidence 00 0000 00011245555555667789999999999999999999986543
Q ss_pred E-EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCC-cEEEEEeCCEecCCC--CCeEEeecC-
Q psy2148 1722 K-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKP-LDVYWLKNGKKIIPD--IRYKTLEED- 1795 (1884)
Q Consensus 1722 ~-~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~-p~v~W~k~~~~l~~~--~~~~~~~~~- 1795 (1884)
. ....|.|.... .+|.+...+.......|+.++|.|.+.| .|. +.|+|+|+|..+..+ .+.....++
T Consensus 140 ~~~~~~l~V~~~~-------~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~ 212 (254)
T 2c1o_A 140 FGAGTKLELKRAD-------AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKD 212 (254)
T ss_dssp EBCCEEEEECCCC-------BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTT
T ss_pred ecCCEEEEECCCC-------CCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCC
Confidence 2 23467775321 4687776555444456889999999998 454 469999999988665 111111111
Q ss_pred ----CeEEEEEccCCCCCCEEEEEEEEeCCeeE
Q psy2148 1796 ----NLFTLLIIEAVVEDSGAYECVAMNNAGEA 1824 (1884)
Q Consensus 1796 ----~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~ 1824 (1884)
....|.|.++..+|+|.|+|.|.|.....
T Consensus 213 g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 213 STYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp CCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred CcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 13589999999999999999999998764
No 152
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.79 E-value=3.2e-19 Score=205.85 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=128.5
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCC-----CcEEEEeeC--CEEc------------cCCCcEEEEeeCCeEEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDP-----SMTVEWFHN--GKAL------------SAGSRIKTINDFGFVIL 976 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P-----~~~v~W~~~--g~~i------------~~~~~~~~~~~~~~~~L 976 (1884)
+|.+...+.++.+.+|++++|.|.+. +.| .+.|.|+|+ |..+ ....|+.+...++.+.|
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L 115 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSS--QSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTL 115 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEES--SCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred ceeEEeCCceEEecCCCcEEEEeecc--CcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEE
Confidence 56777778899999999999999998 555 489999984 3322 12367877767777899
Q ss_pred EEccCCCCCCeEEEEEEEcCCeeEE-EEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCc
Q psy2148 977 EINDVYLRDSGLYTCKATNKHGEAT-TSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055 (1884)
Q Consensus 977 ~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1055 (1884)
.|.+++.+|+|.|+|.|.|..+... ....|.|.... .+|.
T Consensus 116 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~---------------------------------------~~P~ 156 (254)
T 2c1o_A 116 KISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD---------------------------------------AAPT 156 (254)
T ss_dssp EESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC---------------------------------------BCCE
T ss_pred EECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC---------------------------------------CCCe
Confidence 9999999999999999999866432 23466775311 2344
Q ss_pred eeeecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceE--EEe-eCc----EEEEEEcccCcCCcEEE
Q psy2148 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVK--TVY-DFG----FISLDMDYVYARDSGEY 1127 (1884)
Q Consensus 1056 ~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~--~~~-~~~----~~~l~i~~~~~~d~G~Y 1127 (1884)
+...... ..+..|+.++|.|.+.+. .|. +.|.|+|+|+.+..+.... ... .++ ...|.|.++..+|+|.|
T Consensus 157 v~~~~~~-~~~~~g~~v~l~C~~~g~-~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y 234 (254)
T 2c1o_A 157 VSIFPPS-SEQLTSGGASVVCFLNNF-YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSY 234 (254)
T ss_dssp EEEECCC-HHHHHTTEEEEEEEEEEE-BSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEE
T ss_pred eEeecCC-hhhccCCcEEEEEEEecc-cCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeE
Confidence 4433222 222357899999999842 343 6799999999987651111 111 111 35799999999999999
Q ss_pred EEEEEcCCeee
Q psy2148 1128 ICRATNKWGTA 1138 (1884)
Q Consensus 1128 ~C~a~n~~G~~ 1138 (1884)
+|.|.|.....
T Consensus 235 ~C~a~n~~~~~ 245 (254)
T 2c1o_A 235 TCEATHKTSTS 245 (254)
T ss_dssp EEEEECTTCSS
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 153
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.79 E-value=1e-18 Score=188.02 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=134.5
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCe-EEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPT-IKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 1715 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~ 1715 (1884)
..+|.+...+....+.+|+.+.|.|.+.|.|.+. +.|+|+|..+.. ....|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~ 74 (175)
T 1fnl_A 5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTN 74 (175)
T ss_dssp CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECS
T ss_pred CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEee
Confidence 4568888888888999999999999999998776 899999987643 35579999999999999999999
Q ss_pred eCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCC-cEEEEEeCCEecCCCCCeEEeec
Q psy2148 1716 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP-LDVYWLKNGKKIIPDIRYKTLEE 1794 (1884)
Q Consensus 1716 n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~k~~~~l~~~~~~~~~~~ 1794 (1884)
|..+ +..+.|.|.. +|.+... ....+.+|+.++|.|.+.+.|+ +.+.|+|+|..+.. ...
T Consensus 75 n~~~--s~~~~l~V~~----------~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~------~~~ 135 (175)
T 1fnl_A 75 LSTL--SDPVQLEVHI----------GWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY------FHH 135 (175)
T ss_dssp SSCC--CCCEEEEEEC----------SSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE------EEE
T ss_pred CCcc--cccEEEEEeC----------CCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC------CCC
Confidence 8655 4566777772 3444433 4577889999999999998765 59999999998732 111
Q ss_pred CCeEEEEEccCCCCCCEEEEEEEEeCCee-EEEEEEEEEEe
Q psy2148 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAGE-ARCEAELVVQS 1834 (1884)
Q Consensus 1795 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~ 1834 (1884)
...|.|.++..+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus 136 --~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 136 --NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp --CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred --CCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 237999999999999999999997664 55678888875
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.79 E-value=1.8e-19 Score=218.21 Aligned_cols=183 Identities=15% Similarity=0.102 Sum_probs=150.5
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCe-EEEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSG-VFAVIAE 1715 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG-~Y~C~a~ 1715 (1884)
-.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...... ......++|.|.++..+|+| .|+|.|.
T Consensus 156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~ 233 (347)
T 2ifg_A 156 CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAE 233 (347)
T ss_dssp CCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred CCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEEE
Confidence 35788888888999999999999999999999999999999754322111 12345678999999999999 9999999
Q ss_pred eCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeec-
Q psy2148 1716 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE- 1794 (1884)
Q Consensus 1716 n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~- 1794 (1884)
|..|.....+.|.|.. +|.+ . .....+|+.++|.|.+.|.|.|.|+|+|+|..+..+........
T Consensus 234 n~~g~~~~~~~l~V~~----------~P~i-~---~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~ 299 (347)
T 2ifg_A 234 NDVGRAEVSVQVNVSF----------PASV-Q---LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLE 299 (347)
T ss_dssp ETTEECCEEECCCCBE----------EEEE-E---ECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECC
T ss_pred cCCCCEEEEEEEEEcC----------CCee-e---eccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEe
Confidence 9999998888888874 5665 1 12245799999999999999999999999999986655433211
Q ss_pred ------CCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEec
Q psy2148 1795 ------DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1795 ------~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 1835 (1884)
....+|.|.++..+|+|.|+|.|.|..|.++.++.|.|.++
T Consensus 300 ~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 346 (347)
T 2ifg_A 300 PAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346 (347)
T ss_dssp CCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCC
T ss_pred ecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCC
Confidence 12458999999999999999999999999999999999863
No 155
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.79 E-value=5.2e-19 Score=197.31 Aligned_cols=179 Identities=13% Similarity=0.061 Sum_probs=130.6
Q ss_pred CCceeecCC--CeEEEEEEEeccCCCeEEEEeC---CeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCce
Q psy2148 1646 IQPCRAFEQ--DQARFEVEFDGDPLPTIKWFRE---DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 1720 (1884)
Q Consensus 1646 ~~~~~v~~G--~~~~l~C~~~g~p~~~i~W~~~---~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~ 1720 (1884)
+..+.+.+| +++.|.|.+.+ |.+.++|+++ +..+....++.. .....|.|.+++.+|+|.|+|.|.|..+.
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~---~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~ 89 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW---DSKKGFTIPSYMISYAGMVFCEAKINDES 89 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEE---ETTTEEEEEGGGTTTCSEEEEEEC----C
T ss_pred ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccc---cCCccEEEccCChhcCceEEEEEEECCee
Confidence 467889999 99999999987 8899999884 666655433332 23456999999999999999999985443
Q ss_pred EEE-EEEEEEEecccCCCCCCCCCeEEeccC-ceEEcCCceEEEEEEEecCCC--cEEEEEeCCEecCCCCC-eEEee--
Q psy2148 1721 AKC-SANLVVEEKRQGGRGGVVPPSFLTTIS-SAVINVGQLARFDAKISATKP--LDVYWLKNGKKIIPDIR-YKTLE-- 1793 (1884)
Q Consensus 1721 ~~~-~~~l~V~~~~~~~~~~~~~P~~~~~~~-~~~~~~G~~~~l~C~~~g~p~--p~v~W~k~~~~l~~~~~-~~~~~-- 1793 (1884)
... .+.|.|... .+|.+...+. ...+.+|++++|.|.+.|.|. +.|+|+++|..+..... .....
T Consensus 90 ~~s~~~~l~v~~~--------~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~ 161 (213)
T 2x1w_L 90 YQSIMYIVVVVGY--------RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 161 (213)
T ss_dssp EECCCEEEEECBC--------CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCC
T ss_pred EEEEEEEEEEeCC--------cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccc
Confidence 332 256666431 2455554444 448999999999999999654 57999999987543211 10000
Q ss_pred -----cCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecC
Q psy2148 1794 -----EDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1794 -----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus 162 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p 209 (213)
T 2x1w_L 162 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209 (213)
T ss_dssp SSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred cCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence 1123479999999999999999999999999999999999753
No 156
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.79 E-value=1.1e-18 Score=193.19 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=136.8
Q ss_pred eeecCCceeecCCCeEEEEEEEeeCCCCC-----cEEEEee-CCEEccCCCcEEEEeeC---CeEEEEEccCCCCCCeEE
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTPTNDPS-----MTVEWFH-NGKALSAGSRIKTINDF---GFVILEINDVYLRDSGLY 989 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~~~~P~-----~~v~W~~-~g~~i~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y 989 (1884)
++.++..+.+.+|+++.|.|.+. +.|. +.|.|+| ++..+....++.+..+. +...|.|.+++.+|+|.|
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~--~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 82 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFD--RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQY 82 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEEC--TTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEE
T ss_pred EecCCcCEEEeCCCcEEEEEEec--CCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEE
Confidence 34455678899999999999998 5665 7999999 66655666677665542 556899999999999999
Q ss_pred EEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCC
Q psy2148 990 TCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEA 1069 (1884)
Q Consensus 990 ~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 1069 (1884)
+|.|.|..|..+..+.|.|..++. .|.+.. ..+.+|
T Consensus 83 ~C~~~~~~~~~~~~~~l~V~~~~~---------------------------------------~p~~~~-----~~~~~g 118 (202)
T 3bp6_B 83 RCLVICGAAWDYKYLTVKVKASYM---------------------------------------RIDTRI-----LEVPGT 118 (202)
T ss_dssp EEEEEETTEEEEEEEEEEEEBCCC---------------------------------------CEEEEE-----EECTTT
T ss_pred EEEEEeCCCcceEEEEEEecCCCC---------------------------------------cccEEE-----EecCCC
Confidence 999999999888899999985431 222221 234679
Q ss_pred CcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEee
Q psy2148 1070 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148 (1884)
Q Consensus 1070 ~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~ 1148 (1884)
+.+.|.|.+. |.|.|.|.|++++..+.. ......++....+.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 119 ~~v~l~C~~~--g~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~ 193 (202)
T 3bp6_B 119 GEVQLTCQAR--GYPLAEVSWQNVSVPANT--SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLS 193 (202)
T ss_dssp CCEEEEEEEE--EBSCCEEEETTCCSCCEE--EEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC--
T ss_pred CeEEEEEEcc--ccCCceEEEEeCCCCccC--ceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecC
Confidence 9999999997 688999999999876532 11122233345677888999999999999999999999888887754
No 157
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.79 E-value=5.1e-19 Score=190.62 Aligned_cols=169 Identities=20% Similarity=0.157 Sum_probs=132.8
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCC-eEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLP-TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 1715 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~ 1715 (1884)
..+|.+...+....+.+|+++.|.|.+.+.|.+ .++|++++..+.. ....|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~ 71 (176)
T 1f2q_A 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------TNSSLNIVNAKFEDSGEYKCQHQ 71 (176)
T ss_dssp --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC----------CSSEEEECSCCGGGCEEEEEECT
T ss_pred CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC----------CceEEEEeccceecCEEEEEEcC
Confidence 356888888888899999999999999999885 6999999988763 24679999999999999999998
Q ss_pred eCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEE-ecCCCcEEEEEeCCEecCCCCCeEEeec
Q psy2148 1716 NRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKNGKKIIPDIRYKTLEE 1794 (1884)
Q Consensus 1716 n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~~~~l~~~~~~~~~~~ 1794 (1884)
|..+. ..+.|.|.. ++.+.. .....+.+|+.++|.|.+ .+.|.+.+.|+|+|..+....
T Consensus 72 ~~~~s--~~~~l~V~~----------~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~------- 131 (176)
T 1f2q_A 72 QVNES--EPVYLEVFS----------DWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY------- 131 (176)
T ss_dssp TSSCC--CCEEEEEEC----------SSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------
T ss_pred Ccccc--ccEEEEEeC----------cceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-------
Confidence 86653 456677762 344443 345678899999999999 467778999999999884322
Q ss_pred CCeEEEEEccCCCCCCEEEEEEEEeCCe-eEEEEEEEEEEecC
Q psy2148 1795 DNLFTLLIIEAVVEDSGAYECVAMNNAG-EARCEAELVVQSKK 1836 (1884)
Q Consensus 1795 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~~~ 1836 (1884)
....|.|.++..+|+|.|+|.|.|..| ..+..+.|.|.+.|
T Consensus 132 -~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p 173 (176)
T 1f2q_A 132 -ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173 (176)
T ss_dssp -CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred -CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCC
Confidence 123899999999999999999999755 45566899998743
No 158
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.78 E-value=3.7e-19 Score=196.03 Aligned_cols=185 Identities=13% Similarity=0.122 Sum_probs=132.7
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEe
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n 1716 (1884)
..+|.|...+. ..+.+|++++|.|.+.|.|. .+.|+|+|..+....+. .........|.|.++..+|+|.|+|.|.|
T Consensus 3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (198)
T 1ugn_A 3 LPKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGS 79 (198)
T ss_dssp CCCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccc-cccCCcccEEEECCCCHHHCeEEEEEEEC
Confidence 45788877776 48899999999999999876 79999999866321110 00123456799999999999999999999
Q ss_pred CC-c--eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCC-CeEEe
Q psy2148 1717 RG-G--KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDI-RYKTL 1792 (1884)
Q Consensus 1717 ~~-g--~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~-~~~~~ 1792 (1884)
.. | ..+..+.|.|...+ .+|.+...+ ...+.+|++++|.|.+.+. .|.+.|+|+|..+.... ++...
T Consensus 80 ~~~g~~~~s~~~~l~V~~~~-------~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~ 150 (198)
T 1ugn_A 80 DTAGRSESSDPLELVVTGAY-------IKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPH 150 (198)
T ss_dssp TTTEECCCCCCEEEEEECSS-------CCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC---
T ss_pred CCCCcccCCccEEEEEcccc-------cCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccccccc
Confidence 87 6 34566788887532 256666544 4678899999999999998 78999999999875432 12122
Q ss_pred e-cCCeEEEEEccCCCCCCEEEEEEEEeCCeeE-----EEEEEEEEE
Q psy2148 1793 E-EDNLFTLLIIEAVVEDSGAYECVAMNNAGEA-----RCEAELVVQ 1833 (1884)
Q Consensus 1793 ~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-----~~~~~l~V~ 1833 (1884)
. .+....|.|.++..+|+|.|+|.|.|..+.. +..++|.|.
T Consensus 151 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 151 ARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp ---CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred CCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 2 2235699999999999999999999997621 345566664
No 159
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.78 E-value=1.9e-18 Score=192.50 Aligned_cols=175 Identities=17% Similarity=0.242 Sum_probs=139.5
Q ss_pred cCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCC-------------------CCCeEEEEeCceeEEEEcccccC
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITS-------------------SPDFQIHTFSTKSILIMRQVFME 1705 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~-------------------~~~~~~~~~~~~~~L~i~~v~~~ 1705 (1884)
.+.+..+.+|+++.|.|...+.|.+.+.|++++..... ..++.+ ..+++|.|.+++.+
T Consensus 5 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~---~~~~~L~i~~v~~~ 81 (208)
T 3r4d_A 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII---YSNGSLLFQMITMK 81 (208)
T ss_dssp EEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEE---CTTSCEEECSCCGG
T ss_pred cCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEE---ecCCeEEEcccccc
Confidence 34456789999999999998999999999998642211 112211 13357999999999
Q ss_pred CCeEEEEEEEeCC-ceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecC
Q psy2148 1706 DSGVFAVIAENRG-GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKII 1784 (1884)
Q Consensus 1706 DsG~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~ 1784 (1884)
|+|.|+|.+.|.. +.....+.|.|...+ ..|.+...... +..|+.+.|.|.+.+.| |.|.|+|+|..+.
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~ 151 (208)
T 3r4d_A 82 DMGVYTLDMTDENYRRTQATVRFHVHQPV-------TQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQ 151 (208)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEEECCC-------CCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECC
T ss_pred CCeEEEEEEEcccCceeEEEEEEEeccCC-------CCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCC
Confidence 9999999999984 667788888888543 34667665554 88999999999999976 8999999999999
Q ss_pred CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEE-EEEEEEEe
Q psy2148 1785 PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARC-EAELVVQS 1834 (1884)
Q Consensus 1785 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~ 1834 (1884)
.+.++.+...+. .|.|.++..+|+|.|+|.|.|..|.... .++|.|..
T Consensus 152 ~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~ 200 (208)
T 3r4d_A 152 LTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200 (208)
T ss_dssp CCSSEEEETTTT--EEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-
T ss_pred CCCCeEEcCCCC--EEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEe
Confidence 888887766544 8999999999999999999999998654 46777765
No 160
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.78 E-value=2.5e-18 Score=188.96 Aligned_cols=173 Identities=15% Similarity=0.152 Sum_probs=129.4
Q ss_pred eeecCCCeEEEEEEEeccCCCeEEEEeCC-eecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEE
Q psy2148 1649 CRAFEQDQARFEVEFDGDPLPTIKWFRED-FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANL 1727 (1884)
Q Consensus 1649 ~~v~~G~~~~l~C~~~g~p~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 1727 (1884)
..+.+|+.+.|.|.+.|.|.|.|.|++.. .++. ......+....|.|.+++.+|+|.|.|.|.|..|.....+.|
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l 86 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN----GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS----SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc----ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence 34559999999999999999999999843 2221 123344566789999999999999999999999988889999
Q ss_pred EEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CC--cEEEEEeCCEecCCCCCeEEe----ecCCeEEE
Q psy2148 1728 VVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP--LDVYWLKNGKKIIPDIRYKTL----EEDNLFTL 1800 (1884)
Q Consensus 1728 ~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~--p~v~W~k~~~~l~~~~~~~~~----~~~~~~~L 1800 (1884)
.|...+. .|.+. +. ..+.+|+.++|.|.+.|. |. +.|+|+|++..|......... .......|
T Consensus 87 ~V~~~p~-------~~~~~--~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l 156 (202)
T 1vca_A 87 EIYSFPK-------DPEIH--LS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEV 156 (202)
T ss_dssp EEEBCCS-------CCEEE--ES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEE
T ss_pred EEEeCCC-------CCEeC--Cc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEE
Confidence 9985321 22222 23 668899999999999985 43 479999999987532110000 01123467
Q ss_pred EEccCCCCCCEEEEEEEEeCCee-------EEEEEEEEEEec
Q psy2148 1801 LIIEAVVEDSGAYECVAMNNAGE-------ARCEAELVVQSK 1835 (1884)
Q Consensus 1801 ~i~~~~~~d~G~Y~C~a~N~~G~-------~~~~~~l~V~~~ 1835 (1884)
.|.....+|.|.|+|.|.|.+|. .+.++.|.|...
T Consensus 157 ~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~ 198 (202)
T 1vca_A 157 TFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYIS 198 (202)
T ss_dssp EECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred EEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecC
Confidence 88888888999999999999886 467788888874
No 161
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.78 E-value=9e-19 Score=192.94 Aligned_cols=170 Identities=16% Similarity=0.256 Sum_probs=130.4
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcE-EEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMT-VEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~-v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
..|.|...+.+..+.+|++++|.|.+. +.|.+. |+|+|+|..+.... ..|.|.+++.+|+|.|+|.|
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~~--~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a 73 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQGA--YSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQT 73 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEECC--SSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEE
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcCC--CCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEe
Confidence 457788888889999999999999998 556555 99999999987653 26999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
.|. ..+..+.|.|...+. +... . ...+.+|+.+.
T Consensus 74 ~n~--~~s~~~~l~V~~~p~------------------------------------------~~~~-~-~~~v~~G~~v~ 107 (204)
T 3sgj_C 74 QLS--TLSDPVQLEVHIGWL------------------------------------------LLQA-P-RWVFKEEDPIH 107 (204)
T ss_dssp TTS--BCCCCEEEEEECSSE------------------------------------------EEEC-S-CSEEETTCCEE
T ss_pred CCC--cccccEEEEEecCce------------------------------------------EecC-C-ceeEeCCCcEE
Confidence 985 445567777764322 1111 1 14567899999
Q ss_pred EEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEc-CCeeeEEEEEEEEeeccc
Q psy2148 1074 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATN-KWGTAMTKAKVICKAKHD 1151 (1884)
Q Consensus 1074 l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n-~~G~~~~~~~l~v~~~~~ 1151 (1884)
|.|.+.+ +.|.+.|.|+|||..+... .. ...|.|.++..+|+|.|+|.|.| ..|..+..+.|.|..++.
T Consensus 108 L~C~~~~-~~p~~~v~W~k~g~~~~~~------~~--~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~ 177 (204)
T 3sgj_C 108 LRCHSWK-NTALHKVTYLQNGKGRKYF------HH--NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177 (204)
T ss_dssp EEEEEGG-GCCCEEEEEEETTEEEEEE------EE--CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred EEEEecC-CCCCceEEEEECCcEeecc------cC--CceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence 9999962 4567899999999986421 11 23799999999999999999999 555666678888886554
No 162
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.78 E-value=8.9e-20 Score=203.74 Aligned_cols=179 Identities=18% Similarity=0.304 Sum_probs=140.6
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeec------------CCCCCeEEEEeCceeEEEEcccccCC
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPI------------TSSPDFQIHTFSTKSILIMRQVFMED 1706 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~D 1706 (1884)
++.+...+....+.+|+++.|.|.+.|.|.+.+.|+|++..+ ....++.+. . ..|.|.++..+|
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~--~~L~i~~~~~~d 79 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL--P--TGITFKSVTRED 79 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE--T--TEEECSCCCTTS
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee--c--cEEEEeeCCHHH
Confidence 466777788889999999999999999999999999988652 112233332 2 679999999999
Q ss_pred CeEEEEEEEeCCc--eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEE-ecCCCcEEEEEeCCEec
Q psy2148 1707 SGVFAVIAENRGG--KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKNGKKI 1783 (1884)
Q Consensus 1707 sG~Y~C~a~n~~g--~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~~~~l 1783 (1884)
+|.|+|.+.|..| .....+.|.|.. +|.+...+....+..|+.++|.|.+ .|.|.|.|.|+|++..+
T Consensus 80 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~----------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~ 149 (209)
T 1nbq_A 80 TGTYTCMVSEEGGNSYGEVKVKLIVLV----------PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVM 149 (209)
T ss_dssp CSEEEEEEEETTSSCEECCEEECCEEB----------CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCC
T ss_pred CcEEEEEEecCCCCccceEEEEEEEec----------CCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeC
Confidence 9999999999866 445667788874 5555555556678999999999997 89999999999999988
Q ss_pred CCCCC---------eEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEE--EEEEEE
Q psy2148 1784 IPDIR---------YKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCE--AELVVQ 1833 (1884)
Q Consensus 1784 ~~~~~---------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~--~~l~V~ 1833 (1884)
....+ +.+. .....|.|.++..+|+|.|+|.|.|..|....+ +.|.|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 150 PTNPKSTRAFSNSSYVLN--PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp CSCSSSSSSCTTCCCCCC--TTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred CCccccceeeeccceEEc--CCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 76532 2221 223489999999999999999999999998444 455543
No 163
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.78 E-value=5.5e-18 Score=184.40 Aligned_cols=168 Identities=16% Similarity=0.296 Sum_probs=129.4
Q ss_pred eeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEE
Q psy2148 926 LTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCK 1005 (1884)
Q Consensus 926 ~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 1005 (1884)
..+.+|+.++|.|.+.+.+.|.+.+.|+|+|..+....... ....|.|. +.+|+|.|+|.|.|.. +..+.
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~-----~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~ 77 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----QKTEFKVD--SDDQWGEYSCVFLPEP---MGTAN 77 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-----SEEEEEEC--GGGCCEEEEEEEESTT---SCEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC-----CcEEEEEe--chhhCeEEEEEEECCc---CcEEE
Confidence 57789999999999985433444999999999997665321 23357777 6899999999999843 35667
Q ss_pred EEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCC-
Q psy2148 1006 LTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDP- 1084 (1884)
Q Consensus 1006 l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p- 1084 (1884)
|.|..+ |.+..... ...+.+|+.+.|.|.+. +.|
T Consensus 78 l~V~~~------------------------------------------P~~~~~~~-~~~~~~g~~~~l~C~~~--g~p~ 112 (184)
T 3b5h_A 78 IQLHGP------------------------------------------PRVKAVKS-SEHINEGETAMLVCKSE--SVPP 112 (184)
T ss_dssp EEECCS------------------------------------------CCCEESCS-EEEECTTSCEEEEEECC--CSSC
T ss_pred EEEecC------------------------------------------CceeecCC-CcEEcCCCcEEEEEEEC--CCCC
Confidence 788643 33333222 24677899999999997 788
Q ss_pred CcEEEEEE---CC-EeccCC--CceEEEeeCcEEEEEEcccC-cCCcEEEEEEEEcCCeeeEEEEEEEEee
Q psy2148 1085 TMRIDWFF---NG-RPFATG--SRVKTVYDFGFISLDMDYVY-ARDSGEYICRATNKWGTAMTKAKVICKA 1148 (1884)
Q Consensus 1085 ~~~v~W~k---~~-~~l~~~--~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~G~~~~~~~l~v~~ 1148 (1884)
.+.|.|+| ++ ..+... .++.+..+++...|.|.++. .+|+|.|+|.|.|.+|.....+.|.|..
T Consensus 113 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 113 VTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp CCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred CCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 79999999 44 445432 56777777777899999999 9999999999999999999999998864
No 164
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.78 E-value=7.9e-19 Score=196.86 Aligned_cols=179 Identities=17% Similarity=0.293 Sum_probs=134.7
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCC----CcEEEEee----------------CCEEccC-----CCcEEEEe---eCC
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDP----SMTVEWFH----------------NGKALSA-----GSRIKTIN---DFG 972 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P----~~~v~W~~----------------~g~~i~~-----~~~~~~~~---~~~ 972 (1884)
..+..+.+.+|++++|.|.+. +.| .+.|.|+| ++..+.. ..|+.+.. ..+
T Consensus 5 ~~~~~v~v~~G~~v~L~C~~~--~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 82 (214)
T 3jz7_A 5 TPEQRIEKAKGETAYLPCKFT--LSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSG 82 (214)
T ss_dssp -CEEEEEEETTSCEEECCBCC--CCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGT
T ss_pred cCCceEEEecCCCEEEEEEEe--cCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCC
Confidence 344667899999999999998 444 46999998 5555542 44555543 123
Q ss_pred eEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCC
Q psy2148 973 FVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPN 1052 (1884)
Q Consensus 973 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1884)
...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.++
T Consensus 83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~------------------------------------- 125 (214)
T 3jz7_A 83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGT------------------------------------- 125 (214)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSC-------------------------------------
T ss_pred cccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCc-------------------------------------
Confidence 4579999999999999999999999999999999998654321
Q ss_pred CCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEEC--CEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEE
Q psy2148 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFN--GRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICR 1130 (1884)
Q Consensus 1053 ~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~--~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 1130 (1884)
.... ...+.+|+.+.|.|.+. .+.|.+.|.|+|+ +..+...... ...+ ..|.|.++..+|+|.|+|.
T Consensus 126 -----~~~~-~~~~~~g~~v~l~C~~~-~g~p~~~v~W~~~~~~~~~~~~~~~--~~~~--~~L~i~~~~~~d~G~Y~C~ 194 (214)
T 3jz7_A 126 -----RCFV-DGSEEIGNDFKLKCEPK-EGSLPLQFEWQKLSDSQTMPTPWLA--EMTS--PVISVKNASSEYSGTYSCT 194 (214)
T ss_dssp -----EEEE-ESCCBTTCCEEEEEECS-BCCSSCEEEEEECSTTCCCCGGGGG--GTTS--SEEEECSCCGGGCEEEEEE
T ss_pred -----eeee-ecceecCCcEEEEecCC-CCCCCCEEEEEECCCCCccCcccee--ccCC--CEEEEecCCHHHCEEEEEE
Confidence 1111 13467899999999993 3889999999995 4444432111 1112 2799999999999999999
Q ss_pred EEcCCeeeEEEEEEEEeec
Q psy2148 1131 ATNKWGTAMTKAKVICKAK 1149 (1884)
Q Consensus 1131 a~n~~G~~~~~~~l~v~~~ 1149 (1884)
|.|..|..+.++.|.|..|
T Consensus 195 a~N~~g~~~~~~~l~V~~P 213 (214)
T 3jz7_A 195 VQNRVGSDQCMLRLDVVPP 213 (214)
T ss_dssp EECSSCEEEEEEEECCBCC
T ss_pred EEcCCCcEEEEEEEEEeCC
Confidence 9999999999999988743
No 165
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=190.48 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=128.6
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.+|.|...+.. .+.+|++++|.|.+. + |.+.+.|+|+|..+....+. .........|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~--~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 78 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGT--L-EAREYRLDKEESPAPWDRQN-PLEPKNKARFSIPSMTEDYAGRYRCYYR 78 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECC--T-TCCEEEEEETTSCSCSEEEC-CCSSSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCC--C-CCCEEEEEECCCCCcccccc-cccCCceEEEEeccCCcccCceEEEEEe
Confidence 46888887777 899999999999997 4 66799999999887542211 1112344589999999999999999999
Q ss_pred cCCee--EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 995 NKHGE--ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 995 N~~G~--~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|..|. .+..+.|.|.+.+ .+|.+..... ..+.+|+.+
T Consensus 79 n~~g~~~~s~~~~l~V~~~~---------------------------------------~~p~~~~~~~--~~v~~G~~v 117 (196)
T 3p2t_A 79 SPVGWSQPSDPLELVMTGAY---------------------------------------SKPTLSALPS--PLVTSGKSV 117 (196)
T ss_dssp ETTEEBCCCCCEEEEEECSS---------------------------------------CCCEEEEESC--SEECTTCCE
T ss_pred CCCcccCCCccEEEEecCCC---------------------------------------CCCEEEeCCc--ceecCCCeE
Confidence 99983 3556777776421 2344433222 356799999
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEeccCCCceEE-EeeCcEEEEEEcccCcCCcEEEEEEEEcCCe
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKT-VYDFGFISLDMDYVYARDSGEYICRATNKWG 1136 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G 1136 (1884)
+|.|.+. + +.+.+.|+|+|..+........ ........|.|.+++.+|+|.|+|.|.|..+
T Consensus 118 ~L~C~~~--~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 118 TLLCQSR--S-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EEEEEEE--E-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred EEEEecC--C-CCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 9999997 4 3568999999988765432221 1223345799999999999999999999987
No 166
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.78 E-value=1e-18 Score=194.53 Aligned_cols=184 Identities=12% Similarity=0.062 Sum_probs=137.0
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCcee--EEEEcccccCCCeEEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS--ILIMRQVFMEDSGVFAVIA 1714 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~DsG~Y~C~a 1714 (1884)
..+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+....+ ......... .|.|.+++.+|+|.|+|.|
T Consensus 7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 83 (218)
T 1uct_A 7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQY 83 (218)
T ss_dssp SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence 45778877776 57899999999999987 7889999999876532211 111112334 8999999999999999999
Q ss_pred EeCCceEE--EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEe
Q psy2148 1715 ENRGGKAK--CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTL 1792 (1884)
Q Consensus 1715 ~n~~g~~~--~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~ 1792 (1884)
.|..|... ..+.|.|.+.. .+|.+...+ ...+.+|++++|.|.+.+.|.+.+.|+|+|..+... ..
T Consensus 84 ~n~~~~~~~s~~~~l~V~~~~-------~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~~-- 151 (218)
T 1uct_A 84 RIGHYRFRYSDTLELVVTGLY-------GKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQ-- 151 (218)
T ss_dssp EETTTEEEECCCEEEEEECSS-------CCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EE--
T ss_pred EcCCCceeecCCEEEEEcCcc-------cCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--cc--
Confidence 99876443 44677777532 367777655 568899999999998788888999999999877542 11
Q ss_pred ecCCeEEEEEccCCCCCCEEEEEEEEeCCe-----eEEEEEEEEEEec
Q psy2148 1793 EEDNLFTLLIIEAVVEDSGAYECVAMNNAG-----EARCEAELVVQSK 1835 (1884)
Q Consensus 1793 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V~~~ 1835 (1884)
.......|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|.+.
T Consensus 152 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 152 SGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp ECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred CCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence 223345899999999999999999998642 2345578888764
No 167
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.78 E-value=1.2e-18 Score=194.96 Aligned_cols=184 Identities=10% Similarity=0.083 Sum_probs=141.5
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeC--Ceec------------CCCCCeEEEEeCceeEEEEcccccC
Q psy2148 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI------------TSSPDFQIHTFSTKSILIMRQVFME 1705 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~ 1705 (1884)
+.+...+ .+.+.+|++++|.|.+.|.|.+.+.|+|. +... ....++.+.......+|.|.+++.+
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 80 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG 80 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence 3445555 78899999999999999999999999982 2211 0234677666777889999999999
Q ss_pred CCeEEEEEEEeCCc---eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CC-cEEEEEeCC
Q psy2148 1706 DSGVFAVIAENRGG---KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LDVYWLKNG 1780 (1884)
Q Consensus 1706 DsG~Y~C~a~n~~g---~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~k~~ 1780 (1884)
|+|.|.|.|.|..| .....+.|.|...+. .+|.+...+....+..|+.++|.|.+.|. |+ +.|+|+|+|
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~------~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g 154 (213)
T 3mj8_L 81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPN------AAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADG 154 (213)
T ss_dssp GCEEEEEEEEETTTTEEEEBCCEEEEEECSCC------BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred hCEEEEEEeccCCcceeEEcCceEEEEeCCCC------CCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCC
Confidence 99999999999988 455667888885332 47888877777767789999999999985 44 499999999
Q ss_pred EecCCCCC--eEEeecCC---eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2148 1781 KKIIPDIR--YKTLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAEL 1830 (1884)
Q Consensus 1781 ~~l~~~~~--~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 1830 (1884)
..+..+.. .....++. ...|.|.++..+|.|.|+|.|.|..|....++.+
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~ 209 (213)
T 3mj8_L 155 TPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP 209 (213)
T ss_dssp EEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred cccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence 99865311 00111111 2369999999999999999999999887766543
No 168
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.77 E-value=8.7e-19 Score=190.08 Aligned_cols=162 Identities=11% Similarity=0.085 Sum_probs=128.8
Q ss_pred CCCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEE
Q psy2148 1636 PAKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 1715 (1884)
Q Consensus 1636 ~~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~ 1715 (1884)
...+|.+...+.. .+.+|++++|.|.+.| |.+.+.|+|+|.. .......|.|.+++.+|+|.|+|.|.
T Consensus 5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~----------~~~~~~~L~i~~v~~~D~G~Y~C~a~ 72 (184)
T 2gi7_A 5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS----------RYQDQAVLFIPAMKRSLAGRYRCSYQ 72 (184)
T ss_dssp CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC----------CEESSSEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc----------ccCcccEEEECcCChhhCceEEEEEE
Confidence 3467888777764 8899999999999998 8899999999865 11345679999999999999999999
Q ss_pred eCCce--EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEee
Q psy2148 1716 NRGGK--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE 1793 (1884)
Q Consensus 1716 n~~g~--~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~ 1793 (1884)
|..|. .+..+.|.|.+.. .+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|+|..+....+..
T Consensus 73 n~~g~~~~s~~~~l~V~~~~-------~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~--- 140 (184)
T 2gi7_A 73 NGSLWSLPSDQLELVATGVF-------AKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPER--- 140 (184)
T ss_dssp ETTEEBCCCCCEEEEEESSS-------CCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCE---
T ss_pred cCCCccCCCCCEEEEecCcC-------CCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCC---
Confidence 98764 2345777776432 367777666 56778999999999987765 6999999999886533221
Q ss_pred cCCeEEEEEccCCCCCCEEEEEEEEeCCe
Q psy2148 1794 EDNLFTLLIIEAVVEDSGAYECVAMNNAG 1822 (1884)
Q Consensus 1794 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G 1822 (1884)
.....|.|.++..+|+|.|+|.|.|..+
T Consensus 141 -~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 141 -WYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp -EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred -CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 2234799999999999999999999865
No 169
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.77 E-value=6.2e-19 Score=195.43 Aligned_cols=185 Identities=19% Similarity=0.259 Sum_probs=139.7
Q ss_pred CeeeecCCceeecCCCeEEEEEE-EeeCCCCC-cEEEEeeCCEEcc--CCCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECR-LTPTNDPS-MTVEWFHNGKALS--AGSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~-v~~~~~P~-~~v~W~~~g~~i~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
+.+...+.++.+.+|+.+.|.|. +. +.|. +.|+|+|++..+. ...+......++ .|.|.+++.+|+|.|+|.
T Consensus 9 ~~~~~~~~~~~v~~G~~v~L~C~~~~--~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~ 84 (201)
T 3s97_C 9 PFPPEERPEVRVKEGKGMVLLCDPPY--HFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG--NLYIANVEASDKGNYSCF 84 (201)
T ss_dssp CCCSSCCCCEEEETTCCEEECCCCCS--EESSCCEEEEEESSTTCBCCCSSSEEECTTTC--CEEESSCCGGGCEEEEEE
T ss_pred ccCcCCCceEEEECCCCEEEeccccc--cCCCceEEEEEECCceeeeeeCCCeEEEcCCC--eEEECcCCcccCeEEEEE
Confidence 33345568899999999999999 66 5677 8999999998874 333333333333 699999999999999999
Q ss_pred EEcCCeeEEEE---EEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCC
Q psy2148 993 ATNKHGEATTS---CKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEA 1069 (1884)
Q Consensus 993 a~N~~G~~~~~---~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 1069 (1884)
|.|..+..... ..+.+..... ....+|.+..... ...+.+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~p~~~~~~~-~~~~~~g 128 (201)
T 3s97_C 85 VSSPSITKSVFSKFIPLIPIPERT-----------------------------------TKPYPADIVVQFK-DVYALMG 128 (201)
T ss_dssp EEEGGGTEEEECCCEEEEEECCSS-----------------------------------CCCEEEEEEEECC-CEEEETT
T ss_pred EEecCCCcchhhcccceeeccccc-----------------------------------cCCCCCceEecCC-ceEEecC
Confidence 99987766542 3333331110 1113555655554 4778899
Q ss_pred CcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1070 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1070 ~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
+.+.|.|.+. +.|.+.|.|++++..+..+.++ ...+ ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 129 ~~~~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~--~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 129 QNVTLECFAL--GNPVPDIRWRKVLEPMPSTAEI--STSG--AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp CCEEEEEEEE--EESCCEEEEEETTBCCCTTCEE--ETTT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CcEEEEEEcc--CCCCCceEEEeCCCcCCCceee--cCCC--CEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 9999999997 7788999999999988765332 2223 379999999999999999999999999999999886
No 170
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.77 E-value=1.1e-18 Score=189.68 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=126.9
Q ss_pred ceeecCCCeEEEEEEEeccCCCeEEEEeCCee--cCC------------CCCeEEEE---eCceeEEEEcccccCCCeEE
Q psy2148 1648 PCRAFEQDQARFEVEFDGDPLPTIKWFREDFP--ITS------------SPDFQIHT---FSTKSILIMRQVFMEDSGVF 1710 (1884)
Q Consensus 1648 ~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~--~~~------------~~~~~~~~---~~~~~~L~i~~v~~~DsG~Y 1710 (1884)
.+.+.+|+++.|.|.+.+.|.+.+.|+|++.. +.. ..++.+.. ..+..+|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 46788999999999999999999999999852 210 11121111 12245699999999999999
Q ss_pred EEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeE
Q psy2148 1711 AVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYK 1790 (1884)
Q Consensus 1711 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~ 1790 (1884)
.|.+.|..| .+.|.|... ..+....+.+|+.++|.|.+.+.|.|.++|++++..+
T Consensus 84 ~C~~~~~~~----~~~l~V~~~--------------~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------- 138 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFGL--------------TANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------- 138 (184)
T ss_dssp EEEETTEEE----EEEEEEEEE--------------EESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE-------
T ss_pred EEEEEcCCC----cEEEEEEEe--------------cCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc-------
Confidence 999987644 556777631 1234567889999999999999999999999998654
Q ss_pred EeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecC
Q psy2148 1791 TLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1791 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
.... ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|.+.|
T Consensus 139 ~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p 181 (184)
T 2ny1_B 139 IQGG---KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181 (184)
T ss_dssp EEES---SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred ccCc---eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence 1122 289999999999999999999999999999999999854
No 171
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.77 E-value=1.8e-18 Score=199.37 Aligned_cols=182 Identities=13% Similarity=0.128 Sum_probs=134.6
Q ss_pred eeecCCceeecCCCeEEEEEEEec---cCCCeEEEEeCCeecC------------------------------CCCCeEE
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDG---DPLPTIKWFREDFPIT------------------------------SSPDFQI 1688 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g---~p~~~i~W~~~~~~~~------------------------------~~~~~~~ 1688 (1884)
+...+.++.+.+|+++.|.|.+.| .|.+.|.|+|++.... ...+..+
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 344556788999999999999998 8899999999985421 0111111
Q ss_pred EEeCceeEEEEcccccCCCeEEEEEEEeCCce-----EEEEEEEEEEecccCCCCCCCCCeEE-eccCceEEcCCceEEE
Q psy2148 1689 HTFSTKSILIMRQVFMEDSGVFAVIAENRGGK-----AKCSANLVVEEKRQGGRGGVVPPSFL-TTISSAVINVGQLARF 1762 (1884)
Q Consensus 1689 ~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~-----~~~~~~l~V~~~~~~~~~~~~~P~~~-~~~~~~~~~~G~~~~l 1762 (1884)
.. .+..+|.|.+++.+|+|.|.|.+.|..+. ....+.|.|...+. +|.+. ..+....+.+|+.++|
T Consensus 85 ~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~-------~~~~~~~~~~~~~v~~g~~v~L 156 (250)
T 2fbo_J 85 AN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP-------SNNVHVSTAEVVQVDEGNDITM 156 (250)
T ss_dssp SC-TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSC-------CSCCEECCCSEEECCTTCCEEE
T ss_pred cc-CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCC-------CCeEEEecCceEEecCCCcEEE
Confidence 11 12357999999999999999999998764 35688888875421 33443 3445677788999999
Q ss_pred EEEEecCCCcEEEEEeCCEecCCCCCe--E--------------------EeecCCeEEEEEccCCCCCCEEEEEEEEe-
Q psy2148 1763 DAKISATKPLDVYWLKNGKKIIPDIRY--K--------------------TLEEDNLFTLLIIEAVVEDSGAYECVAMN- 1819 (1884)
Q Consensus 1763 ~C~~~g~p~p~v~W~k~~~~l~~~~~~--~--------------------~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N- 1819 (1884)
.|.+.|.|.|.|+|+|++..+...... . .... ....|.|.++..+|+|.|+|.|.|
T Consensus 157 ~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~ 235 (250)
T 2fbo_J 157 TCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-GARNLVIRAAKITDAGRVWCELATG 235 (250)
T ss_dssp CCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-TTTEEEECSCCGGGCEEEEEEEESS
T ss_pred EEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-CccEEEEecCCcccCEEEEEEecCC
Confidence 999999999999999999988653211 0 1100 113899999999999999999999
Q ss_pred --CCeeEEEEEEEEE
Q psy2148 1820 --NAGEARCEAELVV 1832 (1884)
Q Consensus 1820 --~~G~~~~~~~l~V 1832 (1884)
..|....++.|.|
T Consensus 236 ~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 236 QGELDADRSSTILKV 250 (250)
T ss_dssp SSGGGEEEEEEEEEC
T ss_pred ccccCccceeEEEeC
Confidence 5667777777654
No 172
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.77 E-value=8.6e-19 Score=212.24 Aligned_cols=183 Identities=16% Similarity=0.178 Sum_probs=148.0
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCe-EEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSG-LYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a 993 (1884)
.+|.|...+.+..+.+|+.+.|.|.+. +.|.+.|.|++++..+...... ........|.|.+++.+|+| .|+|.|
T Consensus 157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~--g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a 232 (347)
T 2ifg_A 157 GVPTLKVQVPNASVDVGDDVLLRCQVE--GRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWA 232 (347)
T ss_dssp CCCEEEEECCSSCCBTTCCEEEEEEEE--CSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECC
T ss_pred CCCceeccCCceEEeCCCcEEEEEEEe--cCCCCEEEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEE
Confidence 589999999999999999999999998 7788899999999765432211 12234458999999999999 999999
Q ss_pred EcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
.|..|..+..+.|.|..+|.+ + ...+.+|+.+.
T Consensus 233 ~n~~g~~~~~~~l~V~~~P~i-----------------------------------------~------~~~~~~g~~v~ 265 (347)
T 2ifg_A 233 ENDVGRAEVSVQVNVSFPASV-----------------------------------------Q------LHTAVEMHHWC 265 (347)
T ss_dssp EETTEECCEEECCCCBEEEEE-----------------------------------------E------ECCCEESSSEE
T ss_pred EcCCCCEEEEEEEEEcCCCee-----------------------------------------e------eccCccCceEE
Confidence 999999988888888754432 0 12344789999
Q ss_pred EEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeC-------cEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEE
Q psy2148 1074 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDF-------GFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1074 l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v 1146 (1884)
|.|.+. |.|.|.|.|+|+|+.+..+......... ....|.|.+++.+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 266 l~C~~~--g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 343 (347)
T 2ifg_A 266 IPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343 (347)
T ss_dssp EEEEEE--EESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECS
T ss_pred EEEEee--ecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEe
Confidence 999998 7789999999999999876554433221 2457999999999999999999999999999999988
Q ss_pred eecc
Q psy2148 1147 KAKH 1150 (1884)
Q Consensus 1147 ~~~~ 1150 (1884)
..+|
T Consensus 344 ~~~P 347 (347)
T 2ifg_A 344 MDNP 347 (347)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7643
No 173
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.77 E-value=9.5e-18 Score=189.39 Aligned_cols=178 Identities=12% Similarity=0.061 Sum_probs=126.0
Q ss_pred cCCceeecCCCeEEEEEEEeccCCC---eEEEEeCCeec-----------CC------CCCeEEEE---eCceeEEEEcc
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDPLP---TIKWFREDFPI-----------TS------SPDFQIHT---FSTKSILIMRQ 1701 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p~~---~i~W~~~~~~~-----------~~------~~~~~~~~---~~~~~~L~i~~ 1701 (1884)
+.+++.+.+|+++.|.|.+.+.+.+ .|+|+|++... .. ..+..... ..+..+|.|.+
T Consensus 10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 89 (226)
T 4f80_A 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN 89 (226)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence 3456889999999999999987655 79999976321 10 11222211 12356899999
Q ss_pred cccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCcEEEEEeCC
Q psy2148 1702 VFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPLDVYWLKNG 1780 (1884)
Q Consensus 1702 v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~k~~ 1780 (1884)
++.+|+|.|.|.|.|..|.....+.+.+... +...+....+.+|+.+.|.|.+.| .|.|.|+|+|++
T Consensus 90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~------------~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~ 157 (226)
T 4f80_A 90 VTASDSGKYLCYFQDGDFYEKALVELKVAAL------------GSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK 157 (226)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEBC------------CCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTT
T ss_pred CchHHCeeEEEEEECCCcEEEEEEEEeeccc------------eecccceeeeccCCceeeEEEeccCCCCCEEEEEECC
Confidence 9999999999999999888777666665532 112223456778999999999998 599999999976
Q ss_pred EecCCC-CCeEEeec-CCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1781 KKIIPD-IRYKTLEE-DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1781 ~~l~~~-~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
..+... ........ +....+.+.+++.+|+|.|+|.|+|.+|..++++.|.|.+
T Consensus 158 ~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 158 GENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp SCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred ceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence 544333 33223333 3334566777889999999999999999999999999875
No 174
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.76 E-value=1.1e-18 Score=186.86 Aligned_cols=156 Identities=12% Similarity=0.154 Sum_probs=121.3
Q ss_pred ceeecCCCeEEEEEEEec--cCCCeEEEEeCCeecC----------CCCCeEEEEeCceeEEEEcccccCCCeEEEEEEE
Q psy2148 1648 PCRAFEQDQARFEVEFDG--DPLPTIKWFREDFPIT----------SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 1715 (1884)
Q Consensus 1648 ~~~v~~G~~~~l~C~~~g--~p~~~i~W~~~~~~~~----------~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~ 1715 (1884)
.+.+.+|+++.|.|...+ .|.+.|.|+|++..+. ...++.+ ..+++|.|.+++.+|+|.|+|.|.
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~---~~~gsL~I~~v~~~D~G~Y~C~~~ 81 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI---LANGDLKIKNLTRDDSGTYNVTVY 81 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE---CTTSCEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE---CCCCcEEEcccccccCEEEEEEEE
Confidence 356789999999995433 5677999999996542 2334444 233459999999999999999999
Q ss_pred eCCceE--EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEee
Q psy2148 1716 NRGGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE 1793 (1884)
Q Consensus 1716 n~~g~~--~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~ 1793 (1884)
|..|.. ...+.|.|...+ ..|.+.. .+..++|.|.+.|.|.|.|+|+|+|..+..+.+
T Consensus 82 n~~g~~~~~~~~~l~V~~~~-------~~p~i~~--------~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~----- 141 (176)
T 1hng_A 82 STNGTRILNKALDLRILEMV-------SKPMIYW--------ECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ----- 141 (176)
T ss_dssp ETTCCEEEEEEEEEEEECCC-------CCCEEEE--------ETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----
T ss_pred eCCCCEEEEEEEEEEEeCCC-------CCCEEEe--------cCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----
Confidence 999986 677888887532 2455543 244589999999999999999999998854433
Q ss_pred cCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2148 1794 EDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1794 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
+.|.++..+|+|.|+|.|.|.+|..+.++.|.+
T Consensus 142 ------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 142 ------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp ------SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred ------EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 344467799999999999999999988877765
No 175
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.76 E-value=2.9e-18 Score=184.34 Aligned_cols=166 Identities=17% Similarity=0.284 Sum_probs=127.0
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcE-EEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMT-VEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~-v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
.+|.+...+....+.+|++++|.|.+. +.|.+. +.|+|+|..+... ...|.|.+++.+|+|.|+|.|
T Consensus 6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~--~~p~~~~~~W~~~~~~~~~~----------~~~L~i~~~~~~d~G~Y~C~~ 73 (175)
T 1fnl_A 6 PKAVVFLEPQWYSVLEKDSVTLKCQGA--YSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQT 73 (175)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECC--CBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEEC
T ss_pred CCCEEEEcCCceeeeCCCcEEEEeeCC--CCCCCcceEEEECCEEccCC----------ceEEEEeCCCcccCEEEEEEe
Confidence 568888888888999999999999998 556555 8999999988642 226999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
.|..+ +..+.|.|...+ ... ... ...+.+|+.+.
T Consensus 74 ~n~~~--s~~~~l~V~~~~------------------------------------------~~~-~~~-~~~~~~g~~~~ 107 (175)
T 1fnl_A 74 NLSTL--SDPVQLEVHIGW------------------------------------------LLL-QAP-RWVFKEEDPIH 107 (175)
T ss_dssp SSSCC--CCCEEEEEECSS------------------------------------------EEE-ECS-CSEEETTCCEE
T ss_pred eCCcc--cccEEEEEeCCC------------------------------------------cee-eCC-CceecCCCCEE
Confidence 99665 445677776221 111 111 24567899999
Q ss_pred EEEEEeeCCC-CCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCee-eEEEEEEEEee
Q psy2148 1074 FDCRLEPKSD-PTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT-AMTKAKVICKA 1148 (1884)
Q Consensus 1074 l~C~v~~~~~-p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~-~~~~~~l~v~~ 1148 (1884)
|.|.+. +. |.+.|.|+|+|..+... .. ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus 108 l~C~~~--~~~~~~~~~W~k~g~~~~~~------~~--~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 108 LRCHSW--KNTALHKVTYLQNGKDRKYF------HH--NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp EEEEEC--TTCCCEEEEEEETTEEEEEE------EE--CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred EEEEcC--CCCCceEEEEEECCeEccCC------CC--CCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 999997 44 44599999999987421 11 237999999999999999999997664 44567777764
No 176
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.76 E-value=3e-18 Score=186.58 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=133.2
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeC
Q psy2148 1638 KPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 1717 (1884)
Q Consensus 1638 ~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~ 1717 (1884)
.+|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+.|.
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 79 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG 79 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEecCC
Confidence 46777777766 7899999999999986 4578999999986542100 0001234568999999999999999999987
Q ss_pred CceE--EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecC
Q psy2148 1718 GGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEED 1795 (1884)
Q Consensus 1718 ~g~~--~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~ 1795 (1884)
.|.. +..+.|.|.+.. .+|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+.. ......
T Consensus 80 ~~~~~~s~~~~l~V~~~~-------~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~----~~~~~~ 146 (188)
T 1oll_A 80 ELWSEPSNLLDLVVTEMY-------DTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYGK 146 (188)
T ss_dssp TEECCCCCCEEEEEESCS-------CCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEE----EEEECS
T ss_pred CCCCCCCCceEEEecccC-------CCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCccccc----cccCCC
Confidence 6543 455777777422 367777655 5678999999999998764 579999999987643 112234
Q ss_pred CeEEEEEccCCCCCCEEEEEEEEeCCe---eEEEEEEEEEE
Q psy2148 1796 NLFTLLIIEAVVEDSGAYECVAMNNAG---EARCEAELVVQ 1833 (1884)
Q Consensus 1796 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G---~~~~~~~l~V~ 1833 (1884)
....|.|.+++.+|+|.|+|.|.|... ..+..+.|.|.
T Consensus 147 ~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 147 VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp SEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred ceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 456999999999999999999999752 23344666664
No 177
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.76 E-value=1.4e-17 Score=183.13 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=128.1
Q ss_pred ecCCce-eecCCCeEEEEEEEeeCCCCCcEEEEeeCC-EEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCe
Q psy2148 921 TTPTDL-TLAESTLAHFECRLTPTNDPSMTVEWFHNG-KALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHG 998 (1884)
Q Consensus 921 ~~~~~~-~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g-~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 998 (1884)
..+.+. .+.+|++++|.|.+. |.|.|.|.|+++. ..+. .+. ...+....|.|.+++.+|+|.|+|.|.|..|
T Consensus 5 i~p~~~~~~~~G~~v~L~C~~~--g~P~p~i~W~~~~~~~~~--~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 78 (202)
T 1vca_A 5 TTPESRYLAQIGDSVSLTCSTT--GCESPFFSWRTQIDSPLN--GKV--TNEGTTSTLTMNPVSFGNEHSYLCTATCESR 78 (202)
T ss_dssp EESSSEEEEETTSCEEEEEEEE--SCSSCEEEEEETTCCCCS--SEE--EEETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred ECCCCcEEEcCCCcEEEEEeec--CCCCCeEEEECCCCCCcc--ceE--EEcCCccEEEECcCCHHHCEEEEEEEEECCc
Confidence 334444 455999999999998 6788899999943 2221 122 2233445799999999999999999999999
Q ss_pred eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEE
Q psy2148 999 EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRL 1078 (1884)
Q Consensus 999 ~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v 1078 (1884)
..+..+.|.|..+|.. +.+ .. . ..+.+|+.++|.|.+
T Consensus 79 ~~~~~~~l~V~~~p~~---------------------------------------~~~--~~-~-~~~~~G~~~~L~C~~ 115 (202)
T 1vca_A 79 KLEKGIQVEIYSFPKD---------------------------------------PEI--HL-S-GPLEAGKPITVKCSV 115 (202)
T ss_dssp EEEEEEEEEEEBCCSC---------------------------------------CEE--EE-S-SCEETTSCEEEEEEE
T ss_pred eEeeEEEEEEEeCCCC---------------------------------------CEe--CC-c-eEEcCCCCEEEEEEE
Confidence 9888999999864431 111 11 1 457799999999999
Q ss_pred eeCCCCC--cEEEEEECCEeccCCCceEEE----eeCcEEEEEEcccCcCCcEEEEEEEEcCCee-------eEEEEEEE
Q psy2148 1079 EPKSDPT--MRIDWFFNGRPFATGSRVKTV----YDFGFISLDMDYVYARDSGEYICRATNKWGT-------AMTKAKVI 1145 (1884)
Q Consensus 1079 ~~~~~p~--~~v~W~k~~~~l~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~-------~~~~~~l~ 1145 (1884)
.+ +.|. +.|.|+|+|+.|......... .......|.|.....+|.|.|+|.|.|.+|. .+.+..|.
T Consensus 116 ~~-~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~ 194 (202)
T 1vca_A 116 AD-VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQ 194 (202)
T ss_dssp EE-EBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECC
T ss_pred CC-cCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEE
Confidence 84 2333 589999999987543110000 0112345788888889999999999999886 35667788
Q ss_pred Eeecc
Q psy2148 1146 CKAKH 1150 (1884)
Q Consensus 1146 v~~~~ 1150 (1884)
|..+|
T Consensus 195 V~y~P 199 (202)
T 1vca_A 195 VYISP 199 (202)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 77655
No 178
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.76 E-value=1.5e-17 Score=185.20 Aligned_cols=177 Identities=17% Similarity=0.246 Sum_probs=132.2
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccC-------------------CCcEEEEeeCCeEEEEEccCC
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA-------------------GSRIKTINDFGFVILEINDVY 982 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~-------------------~~~~~~~~~~~~~~L~I~~~~ 982 (1884)
.+....+.+|++++|.|... +.|.+.|.|++++..... ..++.+..++ .|.|.+++
T Consensus 5 ~~~~~~v~~G~~v~L~C~~~--~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~ 79 (208)
T 3r4d_A 5 EAVPPQVAEDNNVLLLVHNL--PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG---SLLFQMIT 79 (208)
T ss_dssp EEESSEEETTCCEEEEEECC--CSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTS---CEEECSCC
T ss_pred cCccceeecCCcEEEEEeCC--CCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCC---eEEEcccc
Confidence 34456789999999999976 678889999997643221 2233333222 59999999
Q ss_pred CCCCeEEEEEEEcCC-eeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecC
Q psy2148 983 LRDSGLYTCKATNKH-GEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQ 1061 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1061 (1884)
.+|+|.|+|.|.|.. +..+..+.|.|..++ ..|.+....
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------------------~~p~i~~~~- 119 (208)
T 3r4d_A 80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPV---------------------------------------TQPFLQVTN- 119 (208)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEEECCC---------------------------------------CCCEEEESC-
T ss_pred ccCCeEEEEEEEcccCceeEEEEEEEeccCC---------------------------------------CCCEEecCC-
Confidence 999999999999994 677778888887432 123333222
Q ss_pred CCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEE-
Q psy2148 1062 DNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMT- 1140 (1884)
Q Consensus 1062 ~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~- 1140 (1884)
.. +.+|+.+.|.|.+. +.| +.|.|+++|..+..+.++....++ ..|.|.++..+|+|.|+|.|.|..|...+
T Consensus 120 -~~-~~~g~~v~l~C~~~--~~p-p~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~ 192 (208)
T 3r4d_A 120 -TT-VKELDSVTLTCLSN--DIG-ANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRSN 192 (208)
T ss_dssp -SS-CCTTCCEEEEEECS--CTT-CEEEEEETTEECCCCSSEEEETTT--TEEEESSCCGGGCEEEEEEEECTTCCEECC
T ss_pred -ce-EeeCCCEEEEEECC--CCC-CceEEEECCEeCCCCCCeEEcCCC--CEEEEeccCHHhCeEEEEEEecCCCcccCC
Confidence 12 78999999999996 555 799999999999888777665444 37999999999999999999999998765
Q ss_pred EEEEEEeecc
Q psy2148 1141 KAKVICKAKH 1150 (1884)
Q Consensus 1141 ~~~l~v~~~~ 1150 (1884)
.+.|.|..++
T Consensus 193 ~~~l~v~~~~ 202 (208)
T 3r4d_A 193 SIKLDIIFDP 202 (208)
T ss_dssp CEEECCC---
T ss_pred ceeeeEEeCC
Confidence 3666665443
No 179
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.76 E-value=5.5e-18 Score=189.54 Aligned_cols=185 Identities=17% Similarity=0.246 Sum_probs=134.3
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEee--CCEEc------------cCCCcEEEEeeCCeEEEEEccCC
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH--NGKAL------------SAGSRIKTINDFGFVILEINDVY 982 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~ 982 (1884)
|.+..++ .+.+.+|++++|.|.+. +.|.+.|.|+| ++..+ ....|+.+....+...|.|.+++
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 78 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGD--KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQ 78 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECS--STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCC
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcC--CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCC
Confidence 4555666 88999999999999998 77888999999 22211 13457776666777899999999
Q ss_pred CCCCeEEEEEEEcCCe---eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeee
Q psy2148 983 LRDSGLYTCKATNKHG---EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQ 1059 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G---~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1059 (1884)
.+|+|.|+|.|.|..| .....+.|.|...+. .+|.+...
T Consensus 79 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------------~~P~i~~~ 120 (213)
T 3mj8_L 79 AGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPN--------------------------------------AAPSVTLF 120 (213)
T ss_dssp GGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCC--------------------------------------BCCEEEEE
T ss_pred hhhCEEEEEEeccCCcceeEEcCceEEEEeCCCC--------------------------------------CCCeEEcc
Confidence 9999999999999988 455667888874221 34545443
Q ss_pred cCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEE-EeeCc----EEEEEEcccCcCCcEEEEEEEEcC
Q psy2148 1060 LQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKT-VYDFG----FISLDMDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1060 ~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
... ..+.+|+.++|.|.+.+...|.+.|.|+|||..+..+..... ...++ ...|.|..+..+|+|.|+|.|.|.
T Consensus 121 ~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 199 (213)
T 3mj8_L 121 PPS-SEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHG 199 (213)
T ss_dssp CCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEET
T ss_pred CCC-cccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEEC
Confidence 333 334489999999999842223359999999999875421110 00222 245999999999999999999999
Q ss_pred CeeeEEEEE
Q psy2148 1135 WGTAMTKAK 1143 (1884)
Q Consensus 1135 ~G~~~~~~~ 1143 (1884)
.|....++.
T Consensus 200 ~~~~~~~~~ 208 (213)
T 3mj8_L 200 GNTVEKSLS 208 (213)
T ss_dssp TEEEEEEEC
T ss_pred CccEEeeec
Confidence 987766543
No 180
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=186.15 Aligned_cols=174 Identities=12% Similarity=0.106 Sum_probs=117.3
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.+|.|...+.. .+.+|++++|.|.+. +.|. .+.|+|+|..+....+. .........|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~--~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 78 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGT--LEAQ-EYRLVKEGSPEPWDTQN-PLEPKNKARFSIPSMTEHHAGRYRCYYY 78 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECC--TTCC-EEEEEETTCSSCSEEEC-CCSSTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCC--CCCc-EEEEEECCCCCCccccc-ccCCccccEEEeccCChhHCeEEEEEEe
Confidence 46888877764 889999999999997 5555 99999999887543211 1112344589999999999999999999
Q ss_pred cCCeeE--EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 995 NKHGEA--TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 995 N~~G~~--~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|..|.. +..+.|.|...+ .+|.+... . ...+.+|+.+
T Consensus 79 n~~g~~~~s~~~~l~V~~~~---------------------------------------~~p~i~~~-~-~~~v~~G~~v 117 (196)
T 2d3v_A 79 SPAGWSEPSDPLELVVTGFY---------------------------------------NKPTLSAL-P-SPVVTSGENV 117 (196)
T ss_dssp ETTEECBCCCCEEEEEECSS---------------------------------------CCCEEEC-------------C
T ss_pred CCCCcCCcCccEEEEecCCC---------------------------------------CCCeEEcc-C-CccccCCCcE
Confidence 998743 345677776421 13333322 1 2467899999
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEe--eCcEEEEEEcccCcCCcEEEEEEEEcCCee
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVY--DFGFISLDMDYVYARDSGEYICRATNKWGT 1137 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~ 1137 (1884)
+|.|.+. +.| +.|.|+|+|..+.......... ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus 118 ~L~C~~~--~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 181 (196)
T 2d3v_A 118 TLQCGSR--LRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181 (196)
T ss_dssp EEEEEES--SCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred EEEEEcC--CCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence 9999997 667 8999999999875321111111 122468999999999999999999998764
No 181
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.75 E-value=2e-18 Score=190.21 Aligned_cols=184 Identities=14% Similarity=0.161 Sum_probs=124.6
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.+|.|...+. ..+.+|++++|.|.+. +.|. .++|+|+|..+....+.. ........|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~--~~~~-~~~W~k~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 78 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQGG--QETQ-EYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYG 78 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECC--TTCC-CEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEec--CCCc-EEEEEECCcccccccccc-ccCCcccEEEECCCCHHHCeEEEEEEE
Confidence 4688887766 4899999999999998 5554 699999998874221100 001122369999999999999999999
Q ss_pred cCC-e--eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCc
Q psy2148 995 NKH-G--EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGK 1071 (1884)
Q Consensus 995 N~~-G--~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~ 1071 (1884)
|.. | ..+..+.|.|...+ .+|.+... . ...+.+|+.
T Consensus 79 n~~~g~~~~s~~~~l~V~~~~---------------------------------------~~p~i~~~-~-~~~v~~G~~ 117 (198)
T 1ugn_A 79 SDTAGRSESSDPLELVVTGAY---------------------------------------IKPTLSAQ-P-SPVVNSGGN 117 (198)
T ss_dssp ETTTEECCCCCCEEEEEECSS---------------------------------------CCCEEEEE-S-CSEEETTCC
T ss_pred CCCCCcccCCccEEEEEcccc---------------------------------------cCCccccC-C-ccccCCCCc
Confidence 988 6 34566778887421 12333322 2 256789999
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEeccCCCce-EEEe-eCcEEEEEEcccCcCCcEEEEEEEEcCCeee-----EEEEEE
Q psy2148 1072 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRV-KTVY-DFGFISLDMDYVYARDSGEYICRATNKWGTA-----MTKAKV 1144 (1884)
Q Consensus 1072 ~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~-~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~-----~~~~~l 1144 (1884)
++|.|.+. +. .+.|.|+|+|..+...... .... ......|.|.+++.+|+|.|+|.|.|..+.. +..+.|
T Consensus 118 v~L~C~~~--~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l 194 (198)
T 1ugn_A 118 VTLQCDSQ--VA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLEL 194 (198)
T ss_dssp EEEEEECS--SC-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEE
T ss_pred EEEEEecC--CC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEE
Confidence 99999997 55 6799999999987543221 1111 2234689999999999999999999987622 334555
Q ss_pred EEe
Q psy2148 1145 ICK 1147 (1884)
Q Consensus 1145 ~v~ 1147 (1884)
.|.
T Consensus 195 ~V~ 197 (198)
T 1ugn_A 195 LVL 197 (198)
T ss_dssp EEE
T ss_pred Eec
Confidence 553
No 182
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.75 E-value=2.4e-18 Score=192.52 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=134.5
Q ss_pred eeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--eec------------CCCCCeEEEEeCceeEEEEcccccCCC
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDS 1707 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~Ds 1707 (1884)
++..+..+.+.+|+++.|.|.+.|.|.+.|.|+|++ ..+ ....++.+...+...+|.|.+++.+|+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF 83 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence 455577888999999999999999999999999853 211 112467776666778999999999999
Q ss_pred eEEEEEEEeCCceEEE-EEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EEEEEeCCEecC
Q psy2148 1708 GVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLKNGKKII 1784 (1884)
Q Consensus 1708 G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~k~~~~l~ 1784 (1884)
|.|.|.|.|..|.... .+.|.|.... .+|.+...+....+..|+.++|.|.+.| .|.+ .|+|+|+|..+.
T Consensus 84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~ 156 (213)
T 3d9a_L 84 GMYFCQQSNSWPYTFGGGTKLEIKRAD-------AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ 156 (213)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCC-------BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred EEEEEeeecCCcceeCCCEEEEEecCC-------CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCc
Confidence 9999999998775432 3477776422 3788776555545557999999999988 6665 899999999987
Q ss_pred CCCCe--EEee-cCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEE
Q psy2148 1785 PDIRY--KTLE-EDN----LFTLLIIEAVVEDSGAYECVAMNNAGEAR 1825 (1884)
Q Consensus 1785 ~~~~~--~~~~-~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 1825 (1884)
.+... .... .++ ...|.|.++..+|+|.|+|.|.|......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 204 (213)
T 3d9a_L 157 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP 204 (213)
T ss_dssp TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred ceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence 65111 1111 111 23899999999999999999999987653
No 183
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.75 E-value=4e-18 Score=182.60 Aligned_cols=157 Identities=14% Similarity=0.229 Sum_probs=120.1
Q ss_pred eeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEcc----------CCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEc
Q psy2148 926 LTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALS----------AGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995 (1884)
Q Consensus 926 ~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 995 (1884)
+.+.+|++++|.|...+...|.+.|+|+|++..|. ...|+.+..++ .|.|.+++.+|+|.|+|.|.|
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g---sL~I~~v~~~D~G~Y~C~~~n 82 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVYS 82 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC---cEEEcccccccCEEEEEEEEe
Confidence 56789999999995432236677999999997652 45677664333 399999999999999999999
Q ss_pred CCeeE--EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 996 KHGEA--TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 996 ~~G~~--~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
..|.. +..+.|.|..++ ..|.+.. .+..+.
T Consensus 83 ~~g~~~~~~~~~l~V~~~~---------------------------------------~~p~i~~---------~~~~v~ 114 (176)
T 1hng_A 83 TNGTRILNKALDLRILEMV---------------------------------------SKPMIYW---------ECSNAT 114 (176)
T ss_dssp TTCCEEEEEEEEEEEECCC---------------------------------------CCCEEEE---------ETTTTE
T ss_pred CCCCEEEEEEEEEEEeCCC---------------------------------------CCCEEEe---------cCCcEE
Confidence 99986 667788887432 2233321 234589
Q ss_pred EEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEE
Q psy2148 1074 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1074 l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v 1146 (1884)
|.|.+. |.|.|.|.|+|+|+.+..+.+ +.|..+..+|+|.|+|.|.|..|..++.+.|.+
T Consensus 115 L~C~~~--g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 115 LTCEVL--EGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp EEEECS--SCSSCEEEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred EEEEec--CCCCcEEEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 999997 788899999999999865433 334466799999999999999999988876654
No 184
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.75 E-value=4.2e-18 Score=196.23 Aligned_cols=184 Identities=15% Similarity=0.253 Sum_probs=132.3
Q ss_pred eeecCCceeecCCCeEEEEEEEee-CCCCCcEEEEeeCCEEcc------------------------------CCCcEEE
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTP-TNDPSMTVEWFHNGKALS------------------------------AGSRIKT 967 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~-~~~P~~~v~W~~~g~~i~------------------------------~~~~~~~ 967 (1884)
+..++.++.+.+|++++|.|.+.+ .+.|.+.|+|+|++.... ...|+.+
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 445667889999999999999984 126788999999875431 1223322
Q ss_pred EeeCCeEEEEEccCCCCCCeEEEEEEEcCCee-----EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccC
Q psy2148 968 INDFGFVILEINDVYLRDSGLYTCKATNKHGE-----ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKD 1042 (1884)
Q Consensus 968 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-----~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1884)
.. .+...|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..++
T Consensus 85 ~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~------------------------------ 133 (250)
T 2fbo_J 85 AN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT------------------------------ 133 (250)
T ss_dssp SC-TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS------------------------------
T ss_pred cc-CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC------------------------------
Confidence 22 12347999999999999999999998774 3667888886432
Q ss_pred cCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCce--E----------------
Q psy2148 1043 ELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRV--K---------------- 1104 (1884)
Q Consensus 1043 ~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~--~---------------- 1104 (1884)
.+|.+.......+.+.+|+.+.|.|.+. +.|.|.|.|+|++..+...... .
T Consensus 134 ---------~~~~~~~~~~~~~~v~~g~~v~L~C~~~--g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (250)
T 2fbo_J 134 ---------PSNNVHVSTAEVVQVDEGNDITMTCPCT--DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSE 202 (250)
T ss_dssp ---------CCSCCEECCCSEEECCTTCCEEECCCEE--SCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTT
T ss_pred ---------CCCeEEEecCceEEecCCCcEEEEEEec--CCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCce
Confidence 1233333333346778899999999998 7788899999999988653211 0
Q ss_pred ----EEeeCcEEEEEEcccCcCCcEEEEEEEEc---CCeeeEEEEEEE
Q psy2148 1105 ----TVYDFGFISLDMDYVYARDSGEYICRATN---KWGTAMTKAKVI 1145 (1884)
Q Consensus 1105 ----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n---~~G~~~~~~~l~ 1145 (1884)
.... +...|.|.++..+|+|.|+|.|.| ..|.+..++.|.
T Consensus 203 ~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~ 249 (250)
T 2fbo_J 203 IAGRASFS-GARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249 (250)
T ss_dssp TTTSEEEE-TTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred EecccccC-CccEEEEecCCcccCEEEEEEecCCccccCccceeEEEe
Confidence 1110 124799999999999999999999 566666666654
No 185
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.75 E-value=2.2e-18 Score=185.63 Aligned_cols=170 Identities=16% Similarity=0.230 Sum_probs=129.0
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCc-EEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSM-TVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~-~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
.+|.|...+....+.+|++++|.|.+. +.|.+ .++|+|+|..+..+. ..|.|.+++.+|+|.|+|.|
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~--~~~~~~~i~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C~~ 70 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGN--NFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQH 70 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTT--CC----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEEC
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCC--CCCCcceEEEEECCeECCCCc----------eEEEEeccceecCEEEEEEc
Confidence 468888888889999999999999998 55554 699999999886532 26999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
.|..++. .+.|.|..++ ... ... ...+.+|+.+.
T Consensus 71 ~~~~~s~--~~~l~V~~~~------------------------------------------~~~-~~~-~~~~~~g~~~~ 104 (176)
T 1f2q_A 71 QQVNESE--PVYLEVFSDW------------------------------------------LLL-QAS-AEVVMEGQPLF 104 (176)
T ss_dssp TTSSCCC--CEEEEEECSS------------------------------------------EEE-EES-CSEEETTSCEE
T ss_pred CCccccc--cEEEEEeCcc------------------------------------------eee-cCC-cceeeCCCCEE
Confidence 9977644 4566665211 111 111 24567999999
Q ss_pred EEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCee-eEEEEEEEEeeccc
Q psy2148 1074 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT-AMTKAKVICKAKHD 1151 (1884)
Q Consensus 1074 l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~-~~~~~~l~v~~~~~ 1151 (1884)
|.|.+. .+.|.+.+.|+|+|..+.... ....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|..+|.
T Consensus 105 l~C~~~-~~~p~~~~~W~~~g~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 105 LRCHGW-RNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp EEEEEG-GGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred EEEEec-CCCCceEEEEEECCEEEeeec--------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 999995 267778999999999985321 1237999999999999999999997554 44558888886653
No 186
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.75 E-value=7.6e-18 Score=180.49 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=129.9
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeccC-CCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEe
Q psy2148 1638 KPPVFTKKIQPCRAFEQDQARFEVEFDGDP-LPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716 (1884)
Q Consensus 1638 ~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n 1716 (1884)
.+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|+|+|..+.... ..|.|.++..+|+|.|+|.+.|
T Consensus 3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~d~G~Y~C~~~~ 72 (170)
T 3ry4_A 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQ 72 (170)
T ss_dssp CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEEETT
T ss_pred CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc----------cceEEEecccccCeEEEEEEeC
Confidence 356677777778899999999999999987 68999999999886542 2367789999999999999987
Q ss_pred CCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEE-ecCCCcEEEEEeCCEecCCCCCeEEeecC
Q psy2148 1717 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKNGKKIIPDIRYKTLEED 1795 (1884)
Q Consensus 1717 ~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~~~~l~~~~~~~~~~~~ 1795 (1884)
..+ ...+.|.|.. +|.+.. +....+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+... .
T Consensus 73 ~~~--s~~~~l~v~~----------~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~--------~ 131 (170)
T 3ry4_A 73 TSL--SDPVHLTVLF----------EWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS--------H 131 (170)
T ss_dssp SBC--CCCEEEEEEC----------CSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE--------S
T ss_pred CCc--eEeEEEEEEC----------CceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc--------C
Confidence 543 4457778873 444443 345678899999999999 55677999999999886421 1
Q ss_pred CeEEEEEccCCCCCCEEEEEEEEeCCee-EEEEEEEEE
Q psy2148 1796 NLFTLLIIEAVVEDSGAYECVAMNNAGE-ARCEAELVV 1832 (1884)
Q Consensus 1796 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~V 1832 (1884)
....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 132 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 132 LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp SCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 1237999999999999999999999997 445566666
No 187
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.75 E-value=7.7e-18 Score=189.19 Aligned_cols=182 Identities=14% Similarity=0.163 Sum_probs=133.5
Q ss_pred CeeeecCCceeecCCCeEEEEEEEecc-CCCeEEEEeCC---ee------------c---CCCCCeEEEEeCceeEEEEc
Q psy2148 1640 PVFTKKIQPCRAFEQDQARFEVEFDGD-PLPTIKWFRED---FP------------I---TSSPDFQIHTFSTKSILIMR 1700 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G~~~~l~C~~~g~-p~~~i~W~~~~---~~------------~---~~~~~~~~~~~~~~~~L~i~ 1700 (1884)
+.++..+ .+.+.+|+++.|.|.+.+. |.+.+.|+|.. .+ . ....++.+.......+|.|.
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS 80 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence 3455556 7889999999999999999 99999999932 10 0 01236666666677889999
Q ss_pred ccccCCCeEEEEEEEeCCc-----eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-E
Q psy2148 1701 QVFMEDSGVFAVIAENRGG-----KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-D 1773 (1884)
Q Consensus 1701 ~v~~~DsG~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~ 1773 (1884)
+++.+|+|.|.|.|.|..| .....+.|.|...+. .+|.+...+....+..|+.++|.|.+.| .|.| .
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~------~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~ 154 (218)
T 3s96_B 81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPK------STPTLTVFPPSSEELKENKATLVCLISNFSPSGVT 154 (218)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC------BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCE
T ss_pred cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCC------CCceEEeeCCCcccccCCcEEEEEEECcccCCCeE
Confidence 9999999999999999876 334456888885432 4788877666666667899999999998 6777 8
Q ss_pred EEEEeCCEecCCCCCe-E-EeecCC---eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEE
Q psy2148 1774 VYWLKNGKKIIPDIRY-K-TLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAGEARCEA 1828 (1884)
Q Consensus 1774 v~W~k~~~~l~~~~~~-~-~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~ 1828 (1884)
|.|+|+|..+..+... . ...++. ...|.|.....+|.|.|+|.|.|..|....++
T Consensus 155 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 155 VAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp EEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred EEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 9999999998653211 1 111121 12488888888899999999999998776554
No 188
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.74 E-value=7.8e-19 Score=196.05 Aligned_cols=179 Identities=22% Similarity=0.337 Sum_probs=134.9
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEc------------cCCCcEEEEeeCCeEEEEEccCC
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKAL------------SAGSRIKTINDFGFVILEINDVY 982 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~ 982 (1884)
.++.|...+.++.+.+|+++.|.|.+. +.|.+.|.|+|++..+ ....++.+.. ..|.|.+++
T Consensus 3 ~~~~i~~~~~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~ 76 (209)
T 1nbq_A 3 GSVTVHSSEPEVRIPENNPVKLSCAYS--GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVT 76 (209)
T ss_dssp CCCEEECSCSBCCEETTCCCEEECEEE--SCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCC
T ss_pred ceEEEEcCCCceEEEcCCCEEEEEEEe--CCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCC
Confidence 356777888899999999999999998 6688999999987653 2234454433 379999999
Q ss_pred CCCCeEEEEEEEcCCe--eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeec
Q psy2148 983 LRDSGLYTCKATNKHG--EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQL 1060 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G--~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 1060 (1884)
.+|+|.|+|.|.|..| ..+..+.|.|..+|.++.. .
T Consensus 77 ~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~------------------------------------------~ 114 (209)
T 1nbq_A 77 REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV------------------------------------------N 114 (209)
T ss_dssp TTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCC------------------------------------------C
T ss_pred HHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCc------------------------------------------c
Confidence 9999999999999866 4456677778755432211 1
Q ss_pred CCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCce-------EEEeeCcEEEEEEcccCcCCcEEEEEEEEc
Q psy2148 1061 QDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRV-------KTVYDFGFISLDMDYVYARDSGEYICRATN 1133 (1884)
Q Consensus 1061 ~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 1133 (1884)
. ...+.+|+.+.|.|.+. .+.|.+.|.|+|+|..+..+.+. ..........|.|.++..+|+|.|+|.|.|
T Consensus 115 ~-~~~~~~g~~~~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 192 (209)
T 1nbq_A 115 I-PSSATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN 192 (209)
T ss_dssp C-BSEEETTSCEEECCCCC-SCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEEC
T ss_pred c-ccceecCCEEEEEEeCC-CCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeC
Confidence 1 13467899999999973 38889999999999988765331 011111234799999999999999999999
Q ss_pred CCeeeEEEEE
Q psy2148 1134 KWGTAMTKAK 1143 (1884)
Q Consensus 1134 ~~G~~~~~~~ 1143 (1884)
..|....+..
T Consensus 193 ~~g~~~~s~~ 202 (209)
T 1nbq_A 193 GYGTPMTSNA 202 (209)
T ss_dssp SSSCCEECCC
T ss_pred CcCccccccc
Confidence 9999844433
No 189
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.74 E-value=1.3e-17 Score=186.36 Aligned_cols=172 Identities=13% Similarity=0.138 Sum_probs=134.1
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--ee---c---------CCCCCeEEEEeCceeEEEEcccccC
Q psy2148 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---------TSSPDFQIHTFSTKSILIMRQVFME 1705 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~L~i~~v~~~ 1705 (1884)
|.++..+..+.+.+|++++|.|.+.|.|.+.+.|+|++ .. + ....++.+...+...+|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECA 81 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChH
Confidence 45666678889999999999999999999999999953 11 1 1135677776677789999999999
Q ss_pred CCeEEEEEEEeCCc---eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCcEEEEEeCCE
Q psy2148 1706 DSGVFAVIAENRGG---KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPLDVYWLKNGK 1781 (1884)
Q Consensus 1706 DsG~Y~C~a~n~~g---~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~k~~~ 1781 (1884)
|+|.|.|.|.|..+ .......|.|.... .+|.+...+....+.+|+.++|.|.+.| .|.|.|+|+|+|.
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~-------~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~ 154 (213)
T 3nl4_L 82 DAATYYCQSTYENPTYVSFGGGTEVGVKGDP-------VAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGT 154 (213)
T ss_dssp GCEEEEEEECCSSTTTCEECCCEEEEEECCC-------BCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred HCEEEEEecCCCCceeEEeCCCeEEEEeCCC-------cCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCc
Confidence 99999999999876 44556677776522 5788877666666778999999999999 8999999999999
Q ss_pred ecCCCCCeEE--e-ecCC----eEEEEEccCCCCCCEEEEEEEE
Q psy2148 1782 KIIPDIRYKT--L-EEDN----LFTLLIIEAVVEDSGAYECVAM 1818 (1884)
Q Consensus 1782 ~l~~~~~~~~--~-~~~~----~~~L~i~~~~~~d~G~Y~C~a~ 1818 (1884)
.+..+..... . ..++ ...|.|.++..+|.|.|+|.|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 155 TQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp ECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred cCCCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 8864320000 0 0111 1379999999999999999999
No 190
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.74 E-value=8.7e-18 Score=187.23 Aligned_cols=172 Identities=12% Similarity=0.138 Sum_probs=130.2
Q ss_pred CCceeecCCCeEEEEEEEeccCCCeEEEEeCC--eec------------CCCCCeEEEEeCceeEEEEcccccCCCeEEE
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFA 1711 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~ 1711 (1884)
+..+.+.+|++++|.|.+.|.|.+.|.|+|++ ..+ ....++.+...+....|.|.+++.+|+|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF 86 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence 77888999999999999999999999999842 221 1135676666666779999999999999999
Q ss_pred EEEEeCCceEE-EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EEEEEeCCEecCCC-C
Q psy2148 1712 VIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLKNGKKIIPD-I 1787 (1884)
Q Consensus 1712 C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~k~~~~l~~~-~ 1787 (1884)
|.|.|..+... ....|.|.... .+|.+...+....+..|+.++|.|.+.| .|.+ .|.|+|+|+.+..+ .
T Consensus 87 C~~~~~~~~~~~~~~~l~V~~~~-------~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 159 (210)
T 1lk3_L 87 CQQSWNGPLTFGAGTKLELKRAD-------AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVL 159 (210)
T ss_dssp EEECSSSSCEECCCEEEEECCCC-------BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEE
T ss_pred EEEEcCCCceeCCCEEEEEcCCC-------cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCce
Confidence 99999876543 23467776422 3687876555444568999999999998 5554 89999999998655 1
Q ss_pred C-eEEee-cCC----eEEEEEccCCCCCCEEEEEEEEeCCeeE
Q psy2148 1788 R-YKTLE-EDN----LFTLLIIEAVVEDSGAYECVAMNNAGEA 1824 (1884)
Q Consensus 1788 ~-~~~~~-~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~ 1824 (1884)
. ..... .++ ...|.|.++..+|+|.|+|.|.|.....
T Consensus 160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 160 DSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred EccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 1 11111 111 2379999999999999999999987743
No 191
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.74 E-value=2.2e-17 Score=186.35 Aligned_cols=181 Identities=18% Similarity=0.239 Sum_probs=121.5
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCC-CcEEEEeeCCEE-----------ccC------CCcEEEEee---CCeEEEEEcc
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDP-SMTVEWFHNGKA-----------LSA------GSRIKTIND---FGFVILEIND 980 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P-~~~v~W~~~g~~-----------i~~------~~~~~~~~~---~~~~~L~I~~ 980 (1884)
+...+.+.+|++|+|.|.+.+...+ ...|+|+|++.. +.. ..|+..... .+..+|.|.+
T Consensus 10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 89 (226)
T 4f80_A 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN 89 (226)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence 4456889999999999999842222 237999997632 211 123333322 3567899999
Q ss_pred CCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeec
Q psy2148 981 VYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQL 1060 (1884)
Q Consensus 981 ~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 1060 (1884)
++.+|+|.|+|.|.|..|..+..+.+.+...+. .+..
T Consensus 90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~---------------------------------------~~~~---- 126 (226)
T 4f80_A 90 VTASDSGKYLCYFQDGDFYEKALVELKVAALGS---------------------------------------DLHV---- 126 (226)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCC---------------------------------------CCEE----
T ss_pred CchHHCeeEEEEEECCCcEEEEEEEEeecccee---------------------------------------cccc----
Confidence 999999999999999999877665555542211 0111
Q ss_pred CCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECC-EeccCCCceEEEeeCc-EEEEEEcccCcCCcEEEEEEEEcCCeee
Q psy2148 1061 QDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG-RPFATGSRVKTVYDFG-FISLDMDYVYARDSGEYICRATNKWGTA 1138 (1884)
Q Consensus 1061 ~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~-~~l~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~n~~G~~ 1138 (1884)
...+.+|+.+.|.|.+.+ +.|.|.|+|+|++ ..+...........++ ...+.+..+..+|+|.|+|.|+|..|..
T Consensus 127 --~~~~~~g~~v~l~c~~~g-~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~ 203 (226)
T 4f80_A 127 --DVKGYKDGGIHLECRSTG-WYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGL 203 (226)
T ss_dssp --EEEEEETTEEEEEEEEEE-EBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTE
T ss_pred --eeeeccCCceeeEEEecc-CCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCe
Confidence 134567999999999983 4689999999965 4444433322333333 3345556678899999999999999999
Q ss_pred EEEEEEEEee
Q psy2148 1139 MTKAKVICKA 1148 (1884)
Q Consensus 1139 ~~~~~l~v~~ 1148 (1884)
+.++.|.|..
T Consensus 204 ~~~~~v~v~e 213 (226)
T 4f80_A 204 EKTASISIAD 213 (226)
T ss_dssp EEEEEECCCT
T ss_pred EEEEEEEECC
Confidence 9998888753
No 192
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.74 E-value=3.9e-17 Score=187.32 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=138.6
Q ss_pred CCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--eec-----------------CCCCCeEEEEe--CceeEEEEccc
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI-----------------TSSPDFQIHTF--STKSILIMRQV 1702 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~L~i~~v 1702 (1884)
+....+.+|++++|.|.+.|.| .+.|.|+|++ ..+ ....++.+... ....+|.|.++
T Consensus 9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 3567899999999999999987 6889999843 111 12346666553 34578999999
Q ss_pred ccCCCeEEEEEEEeCCce--EEEEEEEEEEecccCC-----CCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEE
Q psy2148 1703 FMEDSGVFAVIAENRGGK--AKCSANLVVEEKRQGG-----RGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVY 1775 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~-----~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~ 1775 (1884)
+.+|+|.|.|.|.|..+. ....+.|.|...+... .....+|.+...+....+.+|++++|.|.+.+.|.|.|.
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~ 168 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA 168 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence 999999999999998433 2334578887532100 000135667777788889999999999999999999999
Q ss_pred EEe--CCEec------------CCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEE-EEEEEEEE
Q psy2148 1776 WLK--NGKKI------------IPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEAR-CEAELVVQ 1833 (1884)
Q Consensus 1776 W~k--~~~~l------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~ 1833 (1884)
|+| ++..+ ....++.+...+...+|+|.++..+|+|.|+|.|.|..+... ....|.|.
T Consensus 169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 999 55543 124577766666778999999999999999999999654332 34577776
No 193
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.74 E-value=5.7e-18 Score=197.43 Aligned_cols=202 Identities=15% Similarity=0.144 Sum_probs=128.1
Q ss_pred CeeeecCCceeecCCCeEEEEEEEe---ccCCCeEEEEeCCeecCCC------------------CCeEEE--EeCceeE
Q psy2148 1640 PVFTKKIQPCRAFEQDQARFEVEFD---GDPLPTIKWFREDFPITSS------------------PDFQIH--TFSTKSI 1696 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G~~~~l~C~~~---g~p~~~i~W~~~~~~~~~~------------------~~~~~~--~~~~~~~ 1696 (1884)
+.+...+..+.+.+|+++.|.|.+. +.|.+.|.|+|++...... .++.+. ....+.+
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 4455566778899999999999998 7888999999976432211 122211 0123367
Q ss_pred EEEcccccCCCeEEEEEEEeCCceE--EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEE---ecCCC
Q psy2148 1697 LIMRQVFMEDSGVFAVIAENRGGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI---SATKP 1771 (1884)
Q Consensus 1697 L~i~~v~~~DsG~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~---~g~p~ 1771 (1884)
|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|.. .+ +....+.+|+.++|.|.+ .+.|.
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~---------~~------p~~~~v~~G~~v~L~C~~~~~~~~p~ 150 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP---------EE------PRDLRVRVGDTTQMRCSIQSTEEKRV 150 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC---------CC------CSEEEEETTCCEEECCBCEESSSSCC
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec---------cC------CCccccccCCcEEEEEEecCCCCCCc
Confidence 9999999999999999999976554 4455555542 12 236778899999999999 66799
Q ss_pred cEEEEEeCCEe-cCC-----------------C----CCeEEee--cCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEE
Q psy2148 1772 LDVYWLKNGKK-IIP-----------------D----IRYKTLE--EDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCE 1827 (1884)
Q Consensus 1772 p~v~W~k~~~~-l~~-----------------~----~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~ 1827 (1884)
|.|.|+|++.. +.. . .++.+.. ......|.|.++..+|+|.|+|.|.|..|....+
T Consensus 151 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 230 (268)
T 3mj6_A 151 TKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKT 230 (268)
T ss_dssp CEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred cceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEE
Confidence 99999994321 111 0 1222211 1224489999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCCcccCCCCCeeeccCcceeccCCCcEEE
Q psy2148 1828 AELVVQSKKAPGKQAPAPGAAVAQDEAPTVAEPLKDQNVKEGSAVTL 1874 (1884)
Q Consensus 1828 ~~l~V~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l 1874 (1884)
+.|.|... +|.+...|.+.++.+|+.+..
T Consensus 231 ~~l~V~~~------------------~p~~~~~p~~~~~~~~q~~~~ 259 (268)
T 3mj6_A 231 IVLHVVQD------------------EFQRTISPTPPTDKGQQGILN 259 (268)
T ss_dssp EEEEEECC---------------------------------------
T ss_pred EEEEEEcC------------------CCeeeeCCCCCCCCcceeccc
Confidence 99999763 466777788888888877654
No 194
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=181.65 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=121.1
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.+|.|...+.. .+.+|++++|.|.+. + |.+.+.|+|+|... ...+ ..|.|.+++.+|+|.|+|.|.
T Consensus 7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~--~-~~~~~~W~k~g~~~--------~~~~--~~L~i~~v~~~D~G~Y~C~a~ 72 (184)
T 2gi7_A 7 PKPSLQALPSS-LVPLEKPVTLRCQGP--P-GVDLYRLEKLSSSR--------YQDQ--AVLFIPAMKRSLAGRYRCSYQ 72 (184)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECS--T-TCSEEEEEETTTCC--------EESS--SEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEeCCCc-cccCCCcEEEEEeCC--C-CCCEEEEEECCccc--------cCcc--cEEEECcCChhhCceEEEEEE
Confidence 57888877764 899999999999987 5 67899999998761 1112 269999999999999999999
Q ss_pred cCCee--EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 995 NKHGE--ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 995 N~~G~--~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|..|. .+..+.|.|.+.. .+|.+.... ...+.+|+.+
T Consensus 73 n~~g~~~~s~~~~l~V~~~~---------------------------------------~~p~i~~~p--~~~v~~G~~v 111 (184)
T 2gi7_A 73 NGSLWSLPSDQLELVATGVF---------------------------------------AKPSLSAQP--GPAVSSGGDV 111 (184)
T ss_dssp ETTEEBCCCCCEEEEEESSS---------------------------------------CCCEEEEEC--CCSSCCTTCE
T ss_pred cCCCccCCCCCEEEEecCcC---------------------------------------CCCEEEeCC--CceecCCCcE
Confidence 98874 2445677775321 234444333 3567899999
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCe
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWG 1136 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G 1136 (1884)
+|.|.+. +. .+.+.|+|+|..+...... ......|.|.+++.+|+|.|+|.|.|..+
T Consensus 112 ~l~C~~~--~~-~~~~~w~k~g~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 112 TLQCQTR--YG-FDQFALYKEGDPAPYKNPE----RWYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp EEEEECS--SC-CCEEEEEECCCCTTSCCCC----EEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred EEEEEcC--CC-CcEEEEEECCCcCcceecC----CCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 9999985 44 4699999999988753221 12234689999999999999999999865
No 195
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.73 E-value=1.8e-17 Score=177.55 Aligned_cols=164 Identities=18% Similarity=0.312 Sum_probs=125.2
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCC-CcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDP-SMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P-~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
+|.+...+....+.+|+++.|.|.+. +.| .+.++|+|+|..+..+.+ .|.|.+++.+|+|.|+|.|.
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~~--~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~ 71 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQGA--RSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTG 71 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEESC--CCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEET
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEec--CCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEe
Confidence 46677778888899999999999998 444 679999999999976532 36677899999999999999
Q ss_pred cCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEE
Q psy2148 995 NKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHF 1074 (1884)
Q Consensus 995 N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l 1074 (1884)
|..++ ..+.|.|..++. +.. .. ...+.+|+.+.|
T Consensus 72 ~~~~s--~~~~l~v~~~~~------------------------------------------~~~-~~-~~~~~~g~~~~l 105 (170)
T 3ry4_A 72 QTSLS--DPVHLTVLFEWL------------------------------------------VLQ-TP-HLEFQEGETIML 105 (170)
T ss_dssp TSBCC--CCEEEEEECCSE------------------------------------------EEE-CS-CSEECTTCCEEE
T ss_pred CCCce--EeEEEEEECCce------------------------------------------Eec-CC-CceeecCCeEEE
Confidence 86554 456777764321 111 11 245678999999
Q ss_pred EEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCee-eEEEEEEEE
Q psy2148 1075 DCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT-AMTKAKVIC 1146 (1884)
Q Consensus 1075 ~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~-~~~~~~l~v 1146 (1884)
.|.+. .+.|.+.+.|+|+|..+... .....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 106 ~C~~~-~~~p~~~~~W~~~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 106 RCHSW-KDKPLVKVTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EEEEG-GGCCEEEEEEEETTEEEEEE--------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEECC-CCCCCceEEEEECCeEcccc--------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 99995 26677999999999987521 12236999999999999999999999997 344455554
No 196
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.73 E-value=1.1e-17 Score=186.08 Aligned_cols=182 Identities=12% Similarity=0.124 Sum_probs=129.1
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeE--EEEEccCCCCCCeEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFV--ILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~ 992 (1884)
.+|.|...+. ..+.+|++++|.|.+. + |.+.+.|+|+|..+....+. ........ .|.|.+++.+|+|.|+|.
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~--~-~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 82 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQAI--R-EAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQ 82 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECCC--T-TCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEcC--C-CCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEEE
Confidence 5788887776 5889999999999997 4 57799999998776432221 11111223 699999999999999999
Q ss_pred EEcCCeeE--EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCC
Q psy2148 993 ATNKHGEA--TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAG 1070 (1884)
Q Consensus 993 a~N~~G~~--~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 1070 (1884)
|.|..|.. +..+.|.|.+.. .+|.+.... ...+.+|+
T Consensus 83 a~n~~~~~~~s~~~~l~V~~~~---------------------------------------~~P~i~~~p--~~~v~~G~ 121 (218)
T 1uct_A 83 YRIGHYRFRYSDTLELVVTGLY---------------------------------------GKPFLSADR--GLVLMPGE 121 (218)
T ss_dssp EEETTTEEEECCCEEEEEECSS---------------------------------------CCCEEEESS--CSEECTTC
T ss_pred EEcCCCceeecCCEEEEEcCcc---------------------------------------cCCEEEeCC--CCccCCCC
Confidence 99987643 344677775421 234443222 24678999
Q ss_pred cEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCe-----eeEEEEEEE
Q psy2148 1071 KVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWG-----TAMTKAKVI 1145 (1884)
Q Consensus 1071 ~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G-----~~~~~~~l~ 1145 (1884)
+++|.|... +.|.+.|.|+|+|..+... .. .......|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.
T Consensus 122 ~v~L~C~~~--~~~~~~~~W~k~g~~~~~~--~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~ 195 (218)
T 1uct_A 122 NISLTCSSA--HIPFDRFSLAKEGELSLPQ--HQ--SGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELV 195 (218)
T ss_dssp CCEEEEECS--SSCCSEEEEEETTCSSCCS--EE--ECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEE
T ss_pred CEEEEEeCC--CCCCCEEEEEECCCccccc--cc--CCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEE
Confidence 999999764 6677899999999987652 11 223345899999999999999999998642 223446777
Q ss_pred Eee
Q psy2148 1146 CKA 1148 (1884)
Q Consensus 1146 v~~ 1148 (1884)
|.+
T Consensus 196 V~g 198 (218)
T 1uct_A 196 VTD 198 (218)
T ss_dssp EC-
T ss_pred Eec
Confidence 765
No 197
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.73 E-value=3.3e-17 Score=184.69 Aligned_cols=181 Identities=14% Similarity=0.111 Sum_probs=130.1
Q ss_pred ecCCceeecCCCeEEEEEEEeccCC-----CeEEEEeCCeecC---------C------CCCeEEEE---eCceeEEEEc
Q psy2148 1644 KKIQPCRAFEQDQARFEVEFDGDPL-----PTIKWFREDFPIT---------S------SPDFQIHT---FSTKSILIMR 1700 (1884)
Q Consensus 1644 ~~~~~~~v~~G~~~~l~C~~~g~p~-----~~i~W~~~~~~~~---------~------~~~~~~~~---~~~~~~L~i~ 1700 (1884)
.....+.+.+|+++.|.|.+.|.|. +.+.|+|++..+. . ..+..+.. .....+|.|.
T Consensus 6 ~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~ 85 (222)
T 3sbw_C 6 VPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT 85 (222)
T ss_dssp CSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred cCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence 3446678899999999999988874 4899999763221 0 11222211 1134689999
Q ss_pred ccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeC-
Q psy2148 1701 QVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKN- 1779 (1884)
Q Consensus 1701 ~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~- 1779 (1884)
+++.+|+|.|.|.+.| .|.....+.|.|..++ ..|... ....+..|+.++|.|.+.|.|.|.|+|+++
T Consensus 86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~-------~~~~~~---~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~ 154 (222)
T 3sbw_C 86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAPY-------NKINQR---ILVVDPVTSEHELTCQAEGYPKAEVIWTSSD 154 (222)
T ss_dssp SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCC-------CCCEEE---EEEEETTTTEEEEEEEEEEBSCCEEEEEETT
T ss_pred CcccccCeEEEEEEEe-CCCceeEEEEEEECCC-------CCCCce---eeeeecCCCcEEEEEEecCCCCCeEEEEECC
Confidence 9999999999999999 6778888999998532 122222 123677899999999999999999999999
Q ss_pred CEecCCCCCeEEee--cCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEec
Q psy2148 1780 GKKIIPDIRYKTLE--EDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1780 ~~~l~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 1835 (1884)
+..+....+..... ++....+.+..+..+|.|.|+|.|.|..|....++.|.|.+.
T Consensus 155 g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~ 212 (222)
T 3sbw_C 155 HQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL 212 (222)
T ss_dssp CCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC
T ss_pred CceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCC
Confidence 66654433322222 222223333345678999999999999999999999999763
No 198
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.73 E-value=3.4e-18 Score=185.42 Aligned_cols=154 Identities=12% Similarity=0.163 Sum_probs=114.0
Q ss_pred eecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcc-cccCCCeEEEEEEEeCCceEEEEEEEE
Q psy2148 1650 RAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQ-VFMEDSGVFAVIAENRGGKAKCSANLV 1728 (1884)
Q Consensus 1650 ~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~DsG~Y~C~a~n~~g~~~~~~~l~ 1728 (1884)
.+.+|+++.|.|.+.| |. .|+|+|+|..+... .+.+|.|.+ +..+|+|.|+|.|.|..|.....+.+.
T Consensus 10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~---------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~ 78 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK---------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR 78 (186)
T ss_dssp EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC---------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC---------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence 4468999999999998 54 49999999988654 234699999 999999999999999999866666665
Q ss_pred EEecccCCCC--------CCCCCeEE----eccCc---eEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEee
Q psy2148 1729 VEEKRQGGRG--------GVVPPSFL----TTISS---AVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE 1793 (1884)
Q Consensus 1729 V~~~~~~~~~--------~~~~P~~~----~~~~~---~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~ 1793 (1884)
|......... ...+|.+. ..... ..+.+|++++|.|.+ |.|.|+|+|||..+.....
T Consensus 79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~----- 150 (186)
T 1jbj_A 79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA----- 150 (186)
T ss_dssp CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-----
T ss_pred EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-----
Confidence 5432211100 00011111 00011 223489999999998 8899999999999864432
Q ss_pred cCCeEEEEEccCCCCCCEEEEEEEEeCCeeE
Q psy2148 1794 EDNLFTLLIIEAVVEDSGAYECVAMNNAGEA 1824 (1884)
Q Consensus 1794 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~ 1824 (1884)
....|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 --~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 --TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp --CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred --CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 22379999999999999999999999986
No 199
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.73 E-value=1.4e-17 Score=189.19 Aligned_cols=183 Identities=12% Similarity=0.188 Sum_probs=138.5
Q ss_pred ecCCceeecCCCeEEEEEEEeccCC-CeEEEEeCCeecC---------CCCCeEEEE-----------eCceeEEEEccc
Q psy2148 1644 KKIQPCRAFEQDQARFEVEFDGDPL-PTIKWFREDFPIT---------SSPDFQIHT-----------FSTKSILIMRQV 1702 (1884)
Q Consensus 1644 ~~~~~~~v~~G~~~~l~C~~~g~p~-~~i~W~~~~~~~~---------~~~~~~~~~-----------~~~~~~L~i~~v 1702 (1884)
..+..+.+.+|+++.|.|.+.+.|. +.+.|++++.... ....+.-.. ....+.|.|.++
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v 84 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEA 84 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSC
T ss_pred cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEccc
Confidence 3456788999999999999999995 8999998764321 011111111 222344999999
Q ss_pred ccCCCeEEEEEEEeCC-ceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceE-EEEEEE-ecCCCcEEEEEeC
Q psy2148 1703 FMEDSGVFAVIAENRG-GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLA-RFDAKI-SATKPLDVYWLKN 1779 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~-~l~C~~-~g~p~p~v~W~k~ 1779 (1884)
+.+|+|.|.|.|.|.. |.....+.|.|...+ ..|.+...+....+.+|+.+ +|.|.+ .|.|.|.|.|+|+
T Consensus 85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p-------~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~ 157 (231)
T 2pet_A 85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKP-------EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRN 157 (231)
T ss_dssp CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCC-------CCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEET
T ss_pred CcccCceEEEEEEecCCCceEEEEEEEEEecC-------CCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEEC
Confidence 9999999999999997 888899999999654 35778877777888899988 999999 8999999999999
Q ss_pred CEecCCCC----CeEEeec-----CC----eEEEEEccCCCCCCEEEEEEEEe-----CCee-EEEEEEEEEE
Q psy2148 1780 GKKIIPDI----RYKTLEE-----DN----LFTLLIIEAVVEDSGAYECVAMN-----NAGE-ARCEAELVVQ 1833 (1884)
Q Consensus 1780 ~~~l~~~~----~~~~~~~-----~~----~~~L~i~~~~~~d~G~Y~C~a~N-----~~G~-~~~~~~l~V~ 1833 (1884)
|..+.... ++.+... .+ ...|.|.....+|.|.|+|.|.| ..|. .+..+.|+|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V~ 230 (231)
T 2pet_A 158 GQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230 (231)
T ss_dssp TEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCCC
T ss_pred CccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEEe
Confidence 99997665 5554431 11 14688875556679999999999 5665 5566666653
No 200
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.73 E-value=1.2e-17 Score=186.39 Aligned_cols=179 Identities=11% Similarity=0.097 Sum_probs=136.4
Q ss_pred eeecCCceeecCCCeEEEEEEEeccCCCeEEEEeC--CeecC------------CCCCeEEEEeCceeEEEEcccccCCC
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPIT------------SSPDFQIHTFSTKSILIMRQVFMEDS 1707 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~Ds 1707 (1884)
+...+ .+.+.+|++++|.|.+. |.+.+.|+|+ +..+. ...++.+.......+|.|.+++.+|+
T Consensus 4 v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 80 (211)
T 3tv3_L 4 LTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE 80 (211)
T ss_dssp CBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred EEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC
Confidence 34445 77899999999999999 8899999994 22211 23567766667778999999999999
Q ss_pred eEEEEEEEeCCc--eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC--CCcEEEEEeCCEec
Q psy2148 1708 GVFAVIAENRGG--KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT--KPLDVYWLKNGKKI 1783 (1884)
Q Consensus 1708 G~Y~C~a~n~~g--~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~k~~~~l 1783 (1884)
|.|.|.|.|..| .....+.|.|...+. .+|.+...+....+..|+.++|.|.+.|. |.+.|.|+|+|..+
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~------~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l 154 (211)
T 3tv3_L 81 AVYYCGSLVGNWDVIFGGGTKLTVLGQPK------AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPV 154 (211)
T ss_dssp EEEEEEEEETTTEEEECCCEEEEECCSCC------BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred EEEEEEEecCCCceeECCCceEEEeCCCC------cCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeec
Confidence 999999999988 355567888874321 57888877766666689999999999985 35899999999998
Q ss_pred CCCCCe--EEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2148 1784 IPDIRY--KTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAE 1829 (1884)
Q Consensus 1784 ~~~~~~--~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 1829 (1884)
..+... .....++ ...|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 155 KAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp CTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred CCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 653110 0111111 247999999889999999999999988776653
No 201
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=187.68 Aligned_cols=182 Identities=11% Similarity=0.092 Sum_probs=133.1
Q ss_pred ecCCceeecCCCeEEEEEEEeccCCCe---EEEEeCCeecCCCC------------------CeEEE---EeCceeEEEE
Q psy2148 1644 KKIQPCRAFEQDQARFEVEFDGDPLPT---IKWFREDFPITSSP------------------DFQIH---TFSTKSILIM 1699 (1884)
Q Consensus 1644 ~~~~~~~v~~G~~~~l~C~~~g~p~~~---i~W~~~~~~~~~~~------------------~~~~~---~~~~~~~L~i 1699 (1884)
..+..+.+.+|++++|.|.+.|.|.+. |+|+|++..+.... ++.+. ....+.+|.|
T Consensus 4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I 83 (218)
T 4frw_A 4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL 83 (218)
T ss_dssp ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence 345678899999999999999988764 89999875432210 11000 0112357999
Q ss_pred cccccCCCeEEEEEEEeCCceEEE-EEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEe
Q psy2148 1700 RQVFMEDSGVFAVIAENRGGKAKC-SANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLK 1778 (1884)
Q Consensus 1700 ~~v~~~DsG~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k 1778 (1884)
.+++.+|+|.|.|.+.+..+.... ...+.+.. .++.+........+..|+.+.|.|.+.|.|.|.|+|+|
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~ 154 (218)
T 4frw_A 84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLV---------PPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDT 154 (218)
T ss_dssp SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB---------CCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEE
T ss_pred eeccHHHCCceeEEEEeccCceeeeEEEEEEee---------eccceeeeeeeeeeeeccccceeeeccCCcCceEEEEE
Confidence 999999999999999987665444 34444443 24445555667778889999999999999999999999
Q ss_pred CCEecCCCCCeEEeec-CCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1779 NGKKIIPDIRYKTLEE-DNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1779 ~~~~l~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
++..+.....+..... ...+.|.|.++..+|.|.|+|.|+|.+|.....+.|.|..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V 211 (218)
T 4frw_A 155 EVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV 211 (218)
T ss_dssp SSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred CCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence 9987754433221111 1234799999999999999999999999887777776653
No 202
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.73 E-value=2.8e-17 Score=183.46 Aligned_cols=180 Identities=12% Similarity=0.127 Sum_probs=133.6
Q ss_pred eeecCCceeecCCCeEEEEEEEeccC---CCeEEEEeCC--eec------------CCCCCeEEEEeCceeEEEEccccc
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDP---LPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFM 1704 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p---~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~ 1704 (1884)
+.. +..+.+.+|++++|.|.+.|.| .+.|.|+|++ ..+ ....++.+........|.|.+++.
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 82 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT 82 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc
Confidence 444 7788899999999999999988 4799999963 222 123566666666677999999999
Q ss_pred CCCeEEEEEEEeCCceEE-EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCc-EEEEEeCCE
Q psy2148 1705 EDSGVFAVIAENRGGKAK-CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKNGK 1781 (1884)
Q Consensus 1705 ~DsG~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~k~~~ 1781 (1884)
+|+|.|.|.|.|..+... ....|.|..... .+|.+...+....+..|+.++|.|.+.|. |.+ .|+|+|+|+
T Consensus 83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~------~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~ 156 (212)
T 1q0x_L 83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPK------SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGT 156 (212)
T ss_dssp GGCEEEEEEEECSSCEEECCCEEEEECCSCC------BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred cCCEEEEEEEecCchhhcCCCeEEEEecCCC------CCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCE
Confidence 999999999999876432 345677753221 47888776555555679999999999985 443 899999999
Q ss_pred ecCCCCCeE--EeecC----CeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEE
Q psy2148 1782 KIIPDIRYK--TLEED----NLFTLLIIEAVVEDSGAYECVAMNNAGEARCEA 1828 (1884)
Q Consensus 1782 ~l~~~~~~~--~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~ 1828 (1884)
.+..+.+.. ....+ ....|.|..+..+|.|.|+|.|.|..+....++
T Consensus 157 ~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 157 PVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp EECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred eCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence 986552210 11111 123799999999999999999999987755544
No 203
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.73 E-value=6e-17 Score=185.97 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=138.5
Q ss_pred ecCCceeecCCCeEEEEEEEeccC--CCeEEEEeC--Ceec-----------------CCCCCeEEEEe--CceeEEEEc
Q psy2148 1644 KKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFPI-----------------TSSPDFQIHTF--STKSILIMR 1700 (1884)
Q Consensus 1644 ~~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~--~~~~-----------------~~~~~~~~~~~--~~~~~L~i~ 1700 (1884)
..+..+.+.+|++++|.|.+.|.| .+.|.|+|+ +..+ ....++.+... ....+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS 84 (256)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence 345667899999999999999886 689999994 2211 01246666553 345789999
Q ss_pred ccccCCCeEEEEEEEeCCce-----EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCc---
Q psy2148 1701 QVFMEDSGVFAVIAENRGGK-----AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL--- 1772 (1884)
Q Consensus 1701 ~v~~~DsG~Y~C~a~n~~g~-----~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p--- 1772 (1884)
+++.+|+|.|.|.+.|..|. ....+.|.|. .+|.+...+....+.+|++++|.|.+.+.|.+
T Consensus 85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~----------~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~ 154 (256)
T 1nqb_A 85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS----------SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNG 154 (256)
T ss_dssp SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC----------CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTS
T ss_pred cCChhhCEEEEEEEeeccCccceeEEcCceeeeec----------ccccEEecCcEEEEecCCcEEEEeEecCccccccc
Confidence 99999999999999998662 2234677776 36777777888899999999999999998865
Q ss_pred --EEEEEe--CCEecC------------CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeE-EEEEEEEEEe
Q psy2148 1773 --DVYWLK--NGKKII------------PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEA-RCEAELVVQS 1834 (1884)
Q Consensus 1773 --~v~W~k--~~~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~ 1834 (1884)
.|.|+| +|..+. ...|+.+.......+|+|.++..+|+|.|+|.|.|..+.. .....|.|..
T Consensus 155 ~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 155 NTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp CBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred ceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence 999999 565431 1357776666677899999999999999999999864432 2345677764
No 204
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.73 E-value=8.4e-18 Score=182.78 Aligned_cols=162 Identities=14% Similarity=0.218 Sum_probs=125.4
Q ss_pred ceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEE--ccC------------CCcEEEEe---eCCeEEEEEccCCCCCCe
Q psy2148 925 DLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKA--LSA------------GSRIKTIN---DFGFVILEINDVYLRDSG 987 (1884)
Q Consensus 925 ~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~--i~~------------~~~~~~~~---~~~~~~L~I~~~~~~D~G 987 (1884)
.+.+.+|++++|.|.+. +.|.+.|.|+|++.. +.. ..++.... ..+...|.|.+++.+|+|
T Consensus 4 ~v~~~~G~~v~L~C~~~--~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G 81 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD 81 (184)
T ss_dssp EEEEETTSCEEECCBCS--SSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCE
T ss_pred cEEEeCCCCEEEEEEEc--CCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCE
Confidence 46789999999999997 778889999999863 211 22343332 334557999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcC
Q psy2148 988 LYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVP 1067 (1884)
Q Consensus 988 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 1067 (1884)
.|+|.|.|..| .+.|.|...+. + ....+.
T Consensus 82 ~Y~C~~~~~~~----~~~l~V~~~~~---------------------------------------~--------~~~~v~ 110 (184)
T 2ny1_B 82 TYICEVEDQKE----EVQLLVFGLTA---------------------------------------N--------SDTHLL 110 (184)
T ss_dssp EEEEEETTEEE----EEEEEEEEEEE---------------------------------------S--------SCSEEE
T ss_pred EEEEEEEcCCC----cEEEEEEEecC---------------------------------------C--------CCceee
Confidence 99999998755 45666653210 0 113567
Q ss_pred CCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEe
Q psy2148 1068 EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1068 ~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
+|+.+.|.|.+. +.|.+.+.|+++|..+. ... ..|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 111 ~g~~~~l~C~~~--~~p~~~v~W~~~~~~~~--------~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~ 178 (184)
T 2ny1_B 111 QGQSLTLTLESP--PGSSPSVQCRSPRGKNI--------QGG--KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178 (184)
T ss_dssp TTCCEEEEEECC--TTCCCEEEEECTTSCEE--------EES--SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cCCCEEEEEEcC--CCCCCEEEEEeCCCccc--------cCc--eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEE
Confidence 899999999997 67999999999986651 112 379999999999999999999999999999999998
Q ss_pred eccc
Q psy2148 1148 AKHD 1151 (1884)
Q Consensus 1148 ~~~~ 1151 (1884)
+.|.
T Consensus 179 ~~p~ 182 (184)
T 2ny1_B 179 AFQK 182 (184)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 7553
No 205
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.73 E-value=5.9e-17 Score=178.66 Aligned_cols=172 Identities=9% Similarity=0.043 Sum_probs=126.0
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCe-EEEEeCceeEEEEcccccCCCeEEEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAE 1715 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~ 1715 (1884)
..+|.+...+. ..+.+|++++|.|.+.+ |.+.+.|+|+|..+...... ..........|.|.+++.+|+|.|+|.+.
T Consensus 6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 35677776665 67889999999999984 78899999999765321100 01111235679999999999999999998
Q ss_pred eCC-----ceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeE
Q psy2148 1716 NRG-----GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYK 1790 (1884)
Q Consensus 1716 n~~-----g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~ 1790 (1884)
|.. ...+..+.|.|.+.. .+|.+...+. ..+.+|++++|.|.+.+ |.+.+.|+|+|..+.......
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~-------~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~ 154 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLY-------EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAG 154 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSS-------CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECE
T ss_pred cCCCCccccCCCCCEEEEeeccC-------CCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccc
Confidence 753 123456788887532 3688877665 57899999999999987 568999999998775432222
Q ss_pred EeecC-CeEEEEEccCCCCCCEEEEEEEEeCC
Q psy2148 1791 TLEED-NLFTLLIIEAVVEDSGAYECVAMNNA 1821 (1884)
Q Consensus 1791 ~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~N~~ 1821 (1884)
....+ ....|.|.+++ |+|.|+|.|.|..
T Consensus 155 ~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 155 PKVNGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp EEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred cccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 22221 24589999998 9999999999764
No 206
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.73 E-value=1.7e-17 Score=191.09 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=136.4
Q ss_pred CCceeecCCCeEEEEEEEeccC--CCeEEEEeC--CeecC----------------CCCCeEEEEe--CceeEEEEcccc
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFPIT----------------SSPDFQIHTF--STKSILIMRQVF 1703 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~--~~~~~----------------~~~~~~~~~~--~~~~~L~i~~v~ 1703 (1884)
+....+.+|++++|.|.+.|.| .+.|.|+|+ +..+. ...++.+... ....+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ 86 (257)
T ss_dssp ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence 4456789999999999999986 789999996 22110 1346666553 456789999999
Q ss_pred cCCCeEEEEEEEeCCc-------eE--EEEEEEEEEecccCC----C-CCCCCCeEEeccCceEEcCCceEEEEEEEecC
Q psy2148 1704 MEDSGVFAVIAENRGG-------KA--KCSANLVVEEKRQGG----R-GGVVPPSFLTTISSAVINVGQLARFDAKISAT 1769 (1884)
Q Consensus 1704 ~~DsG~Y~C~a~n~~g-------~~--~~~~~l~V~~~~~~~----~-~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~ 1769 (1884)
.+|+|.|.|.|.|..| .. ...+.|.|...+... . ....++.+...+....+.+|++++|.|.+.+.
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 166 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN 166 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence 9999999999999864 11 234578887532100 0 00012344455667778999999999999999
Q ss_pred CCcEEEEEe--CCEecC------------CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEec
Q psy2148 1770 KPLDVYWLK--NGKKII------------PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1770 p~p~v~W~k--~~~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 1835 (1884)
|.+.|.|+| +|..+. ...++.+...+..++|+|.++..+|+|.|+|.|.|..........|+|.+.
T Consensus 167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~ 246 (257)
T 1f3r_B 167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAA 246 (257)
T ss_dssp CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSS
T ss_pred CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCC
Confidence 989999999 555431 135676665566779999999999999999999997622223457777653
No 207
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=177.13 Aligned_cols=162 Identities=11% Similarity=0.180 Sum_probs=120.2
Q ss_pred cCCceeecCCCeEEEEEEEec-cCCCeEEEEeCCeecC---C-C--------------CCeEEEEeCceeEEEEcccccC
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDG-DPLPTIKWFREDFPIT---S-S--------------PDFQIHTFSTKSILIMRQVFME 1705 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g-~p~~~i~W~~~~~~~~---~-~--------------~~~~~~~~~~~~~L~i~~v~~~ 1705 (1884)
.+..+.+.+|+++.|.|.+.+ .+.+.|.|+|++..+. . . .++.+. .+++|.|.+++.+
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~ 80 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKME 80 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGG
T ss_pred CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcc
Confidence 455678899999999999986 4567999999986542 1 0 122221 3578999999999
Q ss_pred CCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCc-eEEEEEEEecC-CCcEEEEEeCCEec
Q psy2148 1706 DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ-LARFDAKISAT-KPLDVYWLKNGKKI 1783 (1884)
Q Consensus 1706 DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~-~~~l~C~~~g~-p~p~v~W~k~~~~l 1783 (1884)
|+|.|.|.+.|..|.....+.|.|...+ ..|.+.... .....|. .++|.|.+.|. |.|.|+|+|+|..+
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~L~V~~~~-------~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l 151 (193)
T 2if7_A 81 DTGSYRAQISTKTSAKLSSYTLRILRQL-------RNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL 151 (193)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEECCC-------EEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred cCceEEEEEEecCCCeEEEEEEEEEccC-------CCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEc
Confidence 9999999999998887778899998532 235555433 2234565 89999999995 58999999999876
Q ss_pred CCCCCeEEeecCCeEEEEEccCCCC-CCEEEEEEEEeCCeeEEEEEE
Q psy2148 1784 IPDIRYKTLEEDNLFTLLIIEAVVE-DSGAYECVAMNNAGEARCEAE 1829 (1884)
Q Consensus 1784 ~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~N~~G~~~~~~~ 1829 (1884)
..+ . .|.|.....+ |.|.|+|.|.|..|..+..+.
T Consensus 152 ~~~---------~--~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~ 187 (193)
T 2if7_A 152 SSQ---------P--NLTVSWDPRISSEQDYTCIAENAVSNLSFSVS 187 (193)
T ss_dssp ESS---------S--EEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred CCC---------C--eEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence 322 2 4667655554 899999999999999865543
No 208
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.72 E-value=3.6e-17 Score=178.05 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=122.3
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.+|.|...+.. .+.+|++|+|.|.+. + +.+.+.|+|+|..+...... .........|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~--~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 77 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQGN--Y-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYR 77 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECC--T-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEecC--C-CCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEec
Confidence 46888877776 899999999999986 3 34689999999887521100 0011234479999999999999999999
Q ss_pred cCCeeE--EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 995 NKHGEA--TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 995 N~~G~~--~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|..|.. +..+.|.|.+.. .+|.+.... ...+.+|+++
T Consensus 78 ~~~~~~~~s~~~~l~V~~~~---------------------------------------~~p~i~~~p--~~~v~~G~~v 116 (188)
T 1oll_A 78 VGELWSEPSNLLDLVVTEMY---------------------------------------DTPTLSVHP--GPEVISGEKV 116 (188)
T ss_dssp ETTEECCCCCCEEEEEESCS---------------------------------------CCCEEEEES--CSEEETTCEE
T ss_pred CCCCCCCCCCceEEEecccC---------------------------------------CCCeEEECC--CCccccCCEE
Confidence 976632 455677776321 234443322 2457899999
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCC
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 1135 (1884)
+|.|.+. + +.+.+.|+|+|..+... .........|.|.+++.+|+|.|+|.|.|..
T Consensus 117 ~L~C~~~--~-~~~~~~w~k~g~~~~~~----~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 117 TFYCRLD--T-ATSMFLLLKEGRSSHVQ----RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp EEEEECS--S-SCSEEEEEEESSSCEEE----EEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred EEEEEcC--C-CCCEEEEEECCcccccc----ccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence 9999985 3 45689999999877541 1223445689999999999999999999875
No 209
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.71 E-value=6.2e-17 Score=178.94 Aligned_cols=171 Identities=12% Similarity=0.156 Sum_probs=124.8
Q ss_pred ceeecCCCeEEEEEEEe----ccCCCeEEEEeCCeecCC------------CCCeEEEEeCceeEEEEcccccCCCeEEE
Q psy2148 1648 PCRAFEQDQARFEVEFD----GDPLPTIKWFREDFPITS------------SPDFQIHTFSTKSILIMRQVFMEDSGVFA 1711 (1884)
Q Consensus 1648 ~~~v~~G~~~~l~C~~~----g~p~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~ 1711 (1884)
.+.+.+|+++.|.|.+. |.|.+.+.|++++..+.. ..+..+ ......+|.|.+++.+|+|.|.
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y~ 81 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYE 81 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE-ccCCCcEEEEecccchhCeEEE
Confidence 46788999999999995 567899999999987621 112222 1234578999999999999999
Q ss_pred EEEEeCCceE-----EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEe-cCCCcEEEEEeCCEecCC
Q psy2148 1712 VIAENRGGKA-----KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS-ATKPLDVYWLKNGKKIIP 1785 (1884)
Q Consensus 1712 C~a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~k~~~~l~~ 1785 (1884)
|.|.|..|.. ...+.|.|.... ..|.+.... ...|+.++|.|.+. |.|.|.|+|+|+|..+..
T Consensus 82 C~~~~~~g~~~~~~~~~~~~l~V~~~~-------~~p~~~~~~----~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~ 150 (201)
T 1dr9_A 82 CVVLKYEKDAFKREHLAEVTLSVKADF-------PTPSISDFE----IPTSNIRRIICSTSGGFPEPHLSWLENGEELNA 150 (201)
T ss_dssp EEEEECCTTSCEEEEEEEEEEEEECCC-------CCCEEEEEE----CSSTTEEEEEEEEEEESSCEEEEEEESSCEECC
T ss_pred EEEEcCCCCccccccccEEEEEEcCCC-------CCCceEecc----CCCCCeEEEEEecCCccCCCEEEEEECCEECcc
Confidence 9999987653 456777777532 245554322 24589999999995 999999999999999875
Q ss_pred CCCeEEee-cCCeE-EEEEccCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2148 1786 DIRYKTLE-EDNLF-TLLIIEAVVEDSGAYECVAMNNAGEARCEAEL 1830 (1884)
Q Consensus 1786 ~~~~~~~~-~~~~~-~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 1830 (1884)
........ +++.+ ...+..+..+|.|.|+|.|.|..|..++.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 151 INTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp SEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred ccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 53322222 22332 33445566789999999999999988776654
No 210
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.71 E-value=5.6e-17 Score=184.88 Aligned_cols=179 Identities=13% Similarity=0.205 Sum_probs=127.5
Q ss_pred eeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--eec---------------CCCCCeEEEE-eCceeEEEEcccc
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI---------------TSSPDFQIHT-FSTKSILIMRQVF 1703 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~~---------------~~~~~~~~~~-~~~~~~L~i~~v~ 1703 (1884)
+...+..+.+.+|++++|.|. .+.|.+.|.|+|+. ..+ ....++.+.. .....+|.|.+++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT 81 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence 455677889999999999999 78899999999962 110 1134555543 2345689999999
Q ss_pred cCCCeEEEEEEEeCCceE-----EEEEEEEEEecccCCC--CCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEE
Q psy2148 1704 MEDSGVFAVIAENRGGKA-----KCSANLVVEEKRQGGR--GGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYW 1776 (1884)
Q Consensus 1704 ~~DsG~Y~C~a~n~~g~~-----~~~~~l~V~~~~~~~~--~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W 1776 (1884)
.+|+|.|.|.|.|..|.. .....|.|...+.... .....+.+...+....+.+|++++|.|.+.|.|.|.|.|
T Consensus 82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W 161 (238)
T 2p1y_A 82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW 161 (238)
T ss_dssp GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence 999999999999986531 1345777875211000 000012677777888899999999999999999999999
Q ss_pred EeCCE--e---c---------CCCCCeEEe--ecCCeEEEEEccCCCCCCEEEEEEEEeCC
Q psy2148 1777 LKNGK--K---I---------IPDIRYKTL--EEDNLFTLLIIEAVVEDSGAYECVAMNNA 1821 (1884)
Q Consensus 1777 ~k~~~--~---l---------~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~ 1821 (1884)
+|++. . + ....++.+. .......|.|.++..+|+|.|+|.|.|..
T Consensus 162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 99741 1 1 123466654 23456799999999999999999999984
No 211
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.71 E-value=2.6e-15 Score=201.56 Aligned_cols=175 Identities=16% Similarity=0.211 Sum_probs=121.0
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEE-Ee--eCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVE-WF--HNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTC 991 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~-W~--~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 991 (1884)
.+|.|. .+.++.+.+|++++|.|.+. |.|.|.|. |+ +||..|.......+........|.|.++..+|+|.|+|
T Consensus 164 ~~p~~~-~~~~~~v~~G~~v~l~C~~~--g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c 240 (731)
T 2v5y_A 164 RTPHFL-RIQNVEVNAGQFATFQCSAI--GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC 240 (731)
T ss_dssp SSCEEC-CCCCEEEETTSCEEEEEEEE--SCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEE
T ss_pred cccccc-cccceEEeCCCcEEEEEEeC--CCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEE
Confidence 467776 56789999999999999998 77888887 88 78888755432222222234589999999999999999
Q ss_pred EEEcCCee-EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCC
Q psy2148 992 KATNKHGE-ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAG 1070 (1884)
Q Consensus 992 ~a~N~~G~-~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 1070 (1884)
.|.|..|. .+..+.|.|..+|.++. +|.... ....
T Consensus 241 ~A~n~~G~~~s~~~~l~V~~~P~~~~------------------------------------~p~~~~--------~~~~ 276 (731)
T 2v5y_A 241 MIRTEGGVGISNYAELVVKEPPVPIA------------------------------------PPQLAS--------VGAT 276 (731)
T ss_dssp EEEETTEEEECCCEEEEEECCCCBSS------------------------------------CCEEEE--------ECSS
T ss_pred EEECCCCCcceeeEEEEEecCCCCCC------------------------------------Ccceec--------cCCc
Confidence 99999998 77788999987765432 232221 1235
Q ss_pred cEEEEEEEee-CC-CCCc--EEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEE--cCCeeeEEEE
Q psy2148 1071 KVHFDCRLEP-KS-DPTM--RIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRAT--NKWGTAMTKA 1142 (1884)
Q Consensus 1071 ~~~l~C~v~~-~~-~p~~--~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~G~~~~~~ 1142 (1884)
.+.|.|.... .| .|.. .|.|.+.+. ..... .......+.|.++.+.+.+.|+|.|. |..|....+.
T Consensus 277 ~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~-----~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~ 348 (731)
T 2v5y_A 277 YLWIQLNANSINGDGPIVAREVEYCTASG-----SWNDR-QPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGP 348 (731)
T ss_dssp CEEEECCCSSBSSCSCCCEEEEEEEESSS-----SCEEE-EECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCC
T ss_pred eEEEEeCCcccCCCCccEEEEEEEEECCC-----CceEE-eccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCC
Confidence 6788886531 12 2222 466655432 11111 22223478999999999999999999 9999765443
No 212
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.71 E-value=5.8e-17 Score=182.88 Aligned_cols=185 Identities=12% Similarity=0.050 Sum_probs=136.8
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEe
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n 1716 (1884)
..+|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+.|
T Consensus 5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 81 (242)
T 1p6f_A 5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRV 81 (242)
T ss_dssp CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEec
Confidence 456888777776 8999999999999875 4578999999986531100 000113456799999999999999999988
Q ss_pred CCce--EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeec
Q psy2148 1717 RGGK--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE 1794 (1884)
Q Consensus 1717 ~~g~--~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~ 1794 (1884)
..+. .+..+.|.|.+.. .+|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+.. .....
T Consensus 82 ~~~~s~~S~~~~L~V~~~~-------~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~~~~ 148 (242)
T 1p6f_A 82 GELWSEPSNLLDLVVTEMY-------DTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYG 148 (242)
T ss_dssp TTEECCCCCCEEEEEECCS-------CCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EEEEC
T ss_pred CCccccCCcceEEEeeccc-------CCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----cccCC
Confidence 7553 2455778887532 367777655 4578899999999998875 469999999986643 12233
Q ss_pred CCeEEEEEccCCCCCCEEEEEEEEeCC---eeEEEEEEEEEEecCC
Q psy2148 1795 DNLFTLLIIEAVVEDSGAYECVAMNNA---GEARCEAELVVQSKKA 1837 (1884)
Q Consensus 1795 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~---G~~~~~~~l~V~~~~~ 1837 (1884)
.....|.|.+++.+|+|.|+|.|.|.. ...+..+.|.|.+.+.
T Consensus 149 ~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~ 194 (242)
T 1p6f_A 149 KVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIE 194 (242)
T ss_dssp SSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC---
T ss_pred CceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCC
Confidence 455699999999999999999999974 2345668888887543
No 213
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.71 E-value=1.4e-16 Score=185.64 Aligned_cols=197 Identities=15% Similarity=0.161 Sum_probs=139.5
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCe-----ec---------CCCCCeEEEEeCceeEEEEccccc
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF-----PI---------TSSPDFQIHTFSTKSILIMRQVFM 1704 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~-----~~---------~~~~~~~~~~~~~~~~L~i~~v~~ 1704 (1884)
.+.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|++. .+ ....++.+...+...+|.|.+++.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 3567777888899999999999999999999999998642 11 123467776666677999999999
Q ss_pred CCCeEEEEEEEeCCce-EEEEEEEEEEecccC----CCCCCCCCeEEeccCceEEcCCceEEEEEEEecCC--CcEEEEE
Q psy2148 1705 EDSGVFAVIAENRGGK-AKCSANLVVEEKRQG----GRGGVVPPSFLTTISSAVINVGQLARFDAKISATK--PLDVYWL 1777 (1884)
Q Consensus 1705 ~DsG~Y~C~a~n~~g~-~~~~~~l~V~~~~~~----~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~ 1777 (1884)
+|+|.|.|.+.|..+. ....+.|.|...+.. ......|+.+...+....+.+|++++|.|.+.|.| .+.|.|+
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~ 171 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV 171 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence 9999999999997554 233457777753210 00000233445556788999999999999999976 5899999
Q ss_pred eCC--Eec-----------------CCCCCeEEeec--CCeEEEEEccCCCCCCEEEEEEEEeCC---ee--EEEEEEEE
Q psy2148 1778 KNG--KKI-----------------IPDIRYKTLEE--DNLFTLLIIEAVVEDSGAYECVAMNNA---GE--ARCEAELV 1831 (1884)
Q Consensus 1778 k~~--~~l-----------------~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~---G~--~~~~~~l~ 1831 (1884)
|++ ..+ ....|+.+..+ .....|.|.++..+|+|.|+|.|.|.. +. ......|+
T Consensus 172 k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~ 251 (276)
T 3auv_A 172 RQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVT 251 (276)
T ss_dssp EECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEE
T ss_pred EcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEE
Confidence 963 211 12357766553 456789999999999999999999983 21 12336788
Q ss_pred EEec
Q psy2148 1832 VQSK 1835 (1884)
Q Consensus 1832 V~~~ 1835 (1884)
|...
T Consensus 252 V~~~ 255 (276)
T 3auv_A 252 VSSA 255 (276)
T ss_dssp EC--
T ss_pred Eccc
Confidence 7653
No 214
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.71 E-value=9.4e-17 Score=180.92 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=128.4
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCC-----CcEEEEeeCCEEcc---------C------CCcEEEEee---CCeEEEE
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDP-----SMTVEWFHNGKALS---------A------GSRIKTIND---FGFVILE 977 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P-----~~~v~W~~~g~~i~---------~------~~~~~~~~~---~~~~~L~ 977 (1884)
.++..+.+.+|+++.|.|.+. +.| .+.|.|+|++..+. . ..|+.+..+ .+...|.
T Consensus 6 ~p~~~v~~~~G~~v~L~C~~~--~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~ 83 (222)
T 3sbw_C 6 VPKDLYVVEYGSNMTIECKFP--VEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQ 83 (222)
T ss_dssp CSCSEEEEETTSCEEEEEECC--CCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEE
T ss_pred cCCccEEEEcCCcEEEEeEec--CCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEE
Confidence 345667899999999999997 444 34899999764331 1 234444332 2456899
Q ss_pred EccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCcee
Q psy2148 978 INDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFT 1057 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1057 (1884)
|.+++.+|+|.|+|.|.| .|..+..+.|.|..++.. |...
T Consensus 84 I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~---------------------------------------~~~~ 123 (222)
T 3sbw_C 84 ITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNK---------------------------------------INQR 123 (222)
T ss_dssp ESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCC---------------------------------------CEEE
T ss_pred EcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCC---------------------------------------CCce
Confidence 999999999999999999 677888889999854321 1111
Q ss_pred eecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEEC-CEeccCCCceEEEe--eCcEEEEEEcccCcCCcEEEEEEEEcC
Q psy2148 1058 SQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFN-GRPFATGSRVKTVY--DFGFISLDMDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1058 ~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~-~~~l~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
. ...+.+|+.+.|.|.+. |.|.+.|.|+++ |..+.......... ++....+.+..+..+|+|.|+|.|.|.
T Consensus 124 ~----~~~~~~g~~v~L~C~~~--g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~ 197 (222)
T 3sbw_C 124 I----LVVDPVTSEHELTCQAE--GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRL 197 (222)
T ss_dssp E----EEEETTTTEEEEEEEEE--EBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEET
T ss_pred e----eeeecCCCcEEEEEEec--CCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeC
Confidence 1 01456899999999997 688999999999 76665443321211 122222333345578999999999999
Q ss_pred CeeeEEEEEEEEeeccc
Q psy2148 1135 WGTAMTKAKVICKAKHD 1151 (1884)
Q Consensus 1135 ~G~~~~~~~l~v~~~~~ 1151 (1884)
.|.....+.|.|..+|.
T Consensus 198 ~g~~~~~~~l~v~~~p~ 214 (222)
T 3sbw_C 198 DPEENHTAELVIPELPL 214 (222)
T ss_dssp TTTEEEEEEEECCCC--
T ss_pred ccceeeEEEEEecCCcc
Confidence 99999999999876554
No 215
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.71 E-value=3e-17 Score=183.48 Aligned_cols=179 Identities=19% Similarity=0.272 Sum_probs=129.5
Q ss_pred eeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc------------cCCCcEEEEeeCCeEEEEEccCCC
Q psy2148 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL------------SAGSRIKTINDFGFVILEINDVYL 983 (1884)
Q Consensus 918 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~ 983 (1884)
.++..+.++.+.+|+++.|.|.+. +.|.+.|+|+|++ ..+ ....++.+...++.+.|.|.+++.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 80 (213)
T 3d9a_L 3 VLTQSPATLSVTPGNSVSLSCRAS--QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET 80 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred eEEeCCccEEEeCCCcEEEEEECC--CCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCCh
Confidence 355667889999999999999998 6677889999853 221 123577777677778999999999
Q ss_pred CCCeEEEEEEEcCCeeEEE-EEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCC
Q psy2148 984 RDSGLYTCKATNKHGEATT-SCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQD 1062 (1884)
Q Consensus 984 ~D~G~Y~C~a~N~~G~~~~-~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1062 (1884)
+|+|.|+|.|.|..|.... .+.|.|.... .+|.+......
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------------------~~p~v~~~~~~ 121 (213)
T 3d9a_L 81 EDFGMYFCQQSNSWPYTFGGGTKLEIKRAD---------------------------------------AAPTVSIFPPS 121 (213)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEECCCC---------------------------------------BCCEEEEECCC
T ss_pred hhCEEEEEeeecCCcceeCCCEEEEEecCC---------------------------------------CCceeEeECCC
Confidence 9999999999999876433 3477775321 23444433222
Q ss_pred CcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEE--E-eeCc----EEEEEEcccCcCCcEEEEEEEEcC
Q psy2148 1063 NLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKT--V-YDFG----FISLDMDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1063 ~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~--~-~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
..+.+|+.+.|.|.+.+ ..|.+ .|.|+|+|+.+..+..... . ..++ ...|.|.++..+|+|.|+|.|.|.
T Consensus 122 -~~~~~g~~~~l~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 199 (213)
T 3d9a_L 122 -SEQLTSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHK 199 (213)
T ss_dssp -HHHHHTTEEEEEEEEEE-EBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECT
T ss_pred -hhhcCCCcEEEEEEEee-ecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEc
Confidence 22337889999999973 24554 8999999999876511111 0 1111 248999999999999999999998
Q ss_pred CeeeE
Q psy2148 1135 WGTAM 1139 (1884)
Q Consensus 1135 ~G~~~ 1139 (1884)
.....
T Consensus 200 ~~~~~ 204 (213)
T 3d9a_L 200 TSTSP 204 (213)
T ss_dssp TCSSC
T ss_pred cCCCc
Confidence 77643
No 216
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=182.41 Aligned_cols=182 Identities=13% Similarity=0.114 Sum_probs=127.3
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCCc---EEEEeeCCEEccCCC------------------cEEEEe---eCCeEEE
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPSM---TVEWFHNGKALSAGS------------------RIKTIN---DFGFVIL 976 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~~---~v~W~~~g~~i~~~~------------------~~~~~~---~~~~~~L 976 (1884)
..+.+++|.+|++++|.|.+. +.|.+ .|+|+|++..+.... |+.... ..+..+|
T Consensus 4 ~~p~~vtv~~G~~v~L~C~v~--~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL 81 (218)
T 4frw_A 4 ETSDVVTVVLGQDAKLPCFYR--GDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSV 81 (218)
T ss_dssp ECCSEEEEETTSCEEECCEEC--CCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCE
T ss_pred eCCCeEEEEcCCCEEEEEEEE--cCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEE
Confidence 345678999999999999998 44544 489999876543221 121111 1123469
Q ss_pred EEccCCCCCCeEEEEEEEcCCeeEEE-EEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCc
Q psy2148 977 EINDVYLRDSGLYTCKATNKHGEATT-SCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055 (1884)
Q Consensus 977 ~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1055 (1884)
.|.+++.+|+|.|.|.+.|..+.... ...+.+..++ .
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~ 119 (218)
T 4frw_A 82 LLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP------------------------------------------L 119 (218)
T ss_dssp EESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC------------------------------------------C
T ss_pred EEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeec------------------------------------------c
Confidence 99999999999999999987665443 3344443221 1
Q ss_pred eeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEe-eCcEEEEEEcccCcCCcEEEEEEEEcC
Q psy2148 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVY-DFGFISLDMDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1056 ~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
..........+..|+.+.|.|.+. +.|.|.|.|+|++..+.......... ....+.|.|..+..+|+|.|+|.|+|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~c~~~--g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~ 197 (218)
T 4frw_A 120 PSLNPGPALEEGQGLTLAASCTAE--GSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHP 197 (218)
T ss_dssp CEEEECSCEETTCCSEEEEEEEEE--EBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred ceeeeeeeeeeeeccccceeeecc--CCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeC
Confidence 111222235667899999999997 78889999999998876543322110 012357999999999999999999999
Q ss_pred CeeeEEEEEEEEee
Q psy2148 1135 WGTAMTKAKVICKA 1148 (1884)
Q Consensus 1135 ~G~~~~~~~l~v~~ 1148 (1884)
.|..+..+.+.|..
T Consensus 198 ~g~~~~~~t~~v~V 211 (218)
T 4frw_A 198 GLLQDQRITHILHV 211 (218)
T ss_dssp TCSSCEEEEEECCE
T ss_pred CCCeEEEEEEEEEE
Confidence 99888777777653
No 217
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.71 E-value=3e-17 Score=183.10 Aligned_cols=181 Identities=17% Similarity=0.228 Sum_probs=130.9
Q ss_pred eeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEcc------------CCCcEEEEeeCCeEEEEEccCCC
Q psy2148 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKALS------------AGSRIKTINDFGFVILEINDVYL 983 (1884)
Q Consensus 918 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~I~~~~~ 983 (1884)
.+..++ .+.+.+|++++|.|.+. |.+.|.|+|+ |..+. ...|+.+....+.+.|.|.+++.
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 77 (211)
T 3tv3_L 3 ALTQPP-SASGSPGQSITISCTGT----SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQT 77 (211)
T ss_dssp CCBCCS-EEEECTTCEEEEEEECC----CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCG
T ss_pred eEEeCc-eEEEcCCCCEEEEEEEC----CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCCh
Confidence 344555 78899999999999985 7779999994 32221 34577766667778999999999
Q ss_pred CCCeEEEEEEEcCCe--eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecC
Q psy2148 984 RDSGLYTCKATNKHG--EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQ 1061 (1884)
Q Consensus 984 ~D~G~Y~C~a~N~~G--~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1061 (1884)
+|+|.|+|.|.|..| .....+.|.|...+. .+|.+.....
T Consensus 78 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------------~~P~v~~~~~ 119 (211)
T 3tv3_L 78 DDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPK--------------------------------------AAPSVTLFPP 119 (211)
T ss_dssp GGCEEEEEEEEETTTEEEECCCEEEEECCSCC--------------------------------------BCCEEEEECC
T ss_pred hHCEEEEEEEecCCCceeECCCceEEEeCCCC--------------------------------------cCCeeEecCC
Confidence 999999999999988 345566788863211 3455544333
Q ss_pred CCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceE--EEeeCc----EEEEEEcccCcCCcEEEEEEEEcCC
Q psy2148 1062 DNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVK--TVYDFG----FISLDMDYVYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1062 ~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~--~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 1135 (1884)
. ..+.+|+.++|.|.+.+...|.+.|.|+|||..+..+.... ....++ ...|.|..+..+|+|.|+|.|.|..
T Consensus 120 ~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~ 198 (211)
T 3tv3_L 120 S-SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG 198 (211)
T ss_dssp C-HHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred c-hhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence 3 23337999999999984323568999999999987532111 111122 2469999999999999999999999
Q ss_pred eeeEEEE
Q psy2148 1136 GTAMTKA 1142 (1884)
Q Consensus 1136 G~~~~~~ 1142 (1884)
|....++
T Consensus 199 ~~~~~~~ 205 (211)
T 3tv3_L 199 STVEKTV 205 (211)
T ss_dssp EEEEEEE
T ss_pred CCEEeec
Confidence 8766554
No 218
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.71 E-value=4.9e-17 Score=182.56 Aligned_cols=181 Identities=12% Similarity=0.139 Sum_probs=127.8
Q ss_pred ecCCceeecCCCeEEEEEEEeccC--CCeEEEEeC--CeecC-----------------CCCCeEEEEe--CceeEEEEc
Q psy2148 1644 KKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFPIT-----------------SSPDFQIHTF--STKSILIMR 1700 (1884)
Q Consensus 1644 ~~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~L~i~ 1700 (1884)
..+..+.+.+|++++|.|.+.|.| .+.+.|+|+ |..+. ...++.+... .+..+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (219)
T 1c1e_H 5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN 84 (219)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence 345667899999999999999875 789999997 33221 1245555543 345789999
Q ss_pred ccccCCCeEEEEEEEeCCce----EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EE
Q psy2148 1701 QVFMEDSGVFAVIAENRGGK----AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DV 1774 (1884)
Q Consensus 1701 ~v~~~DsG~Y~C~a~n~~g~----~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v 1774 (1884)
+++.+|+|.|.|.+.|..+. ....+.|.|...+. .+|.+...+....+.+|+.++|.|.+.| .|.| .|
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~------~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v 158 (219)
T 1c1e_H 85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKT------TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV 158 (219)
T ss_dssp SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCC------BCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEE
T ss_pred CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCC------CCCeEEEecCccccccCCeEEEEEEcccccCCCeEE
Confidence 99999999999999998642 22456788875221 3577765554455678999999999999 8999 99
Q ss_pred EEEeCCEecCCCCCeEEeecCC---eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2148 1775 YWLKNGKKIIPDIRYKTLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELV 1831 (1884)
Q Consensus 1775 ~W~k~~~~l~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 1831 (1884)
+|+|+|..+...........+. ...|.|... ..|.|.|+|.|.|..|.......|.
T Consensus 159 ~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 159 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp EEGGGTBCTTEEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEEEEECC
T ss_pred EEEeCCcccceEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccEEEecC
Confidence 9999998753211111111111 236888544 4466999999999999866555543
No 219
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.71 E-value=8.1e-18 Score=182.40 Aligned_cols=163 Identities=19% Similarity=0.292 Sum_probs=113.0
Q ss_pred eecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEcc-CCCCCCeEEEEEEEcCCeeEEEEEE
Q psy2148 927 TLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEIND-VYLRDSGLYTCKATNKHGEATTSCK 1005 (1884)
Q Consensus 927 ~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~-~~~~D~G~Y~C~a~N~~G~~~~~~~ 1005 (1884)
.+.+|+++.|.|.+. + |+ .|+|+|||..|..+. ++ +|.|.+ ++.+|+|.|+|.|.|..|..+..+.
T Consensus 10 v~~~G~~v~L~C~~~--~-~~-~i~W~k~g~~l~~~~-------~~--~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 76 (186)
T 1jbj_A 10 VSISGTSVELTCPLD--S-DE-NLKWEKNGQELPQKH-------DK--HLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK 76 (186)
T ss_dssp EEEETTEEEEECSSC--C-CT-TCEEEETTEEECSCC-------CS--EEEEESCCTTTSCEEEEEECSSCCCCCCEEEC
T ss_pred EEeCCcEEEEEEeCC--C-CC-ceEEEECCEECCCCC-------CC--EEEECCCCccccCEEEEEEEEeCCCcEEEEEE
Confidence 447799999999997 4 33 499999999997641 11 699999 9999999999999999998666666
Q ss_pred EEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeee------cCCCcCcCCCCcEEEEEEEe
Q psy2148 1006 LTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQ------LQDNLDVPEAGKVHFDCRLE 1079 (1884)
Q Consensus 1006 l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~v~~g~~~~l~C~v~ 1079 (1884)
+.|.........+... ... ....+|.+... +.....+.+|+++.|.|.+
T Consensus 77 ~~v~~~~~~~~~~~~~--------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~- 131 (186)
T 1jbj_A 77 ARVGSADDAKKDAAKK--------------------DDA----KKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL- 131 (186)
T ss_dssp CCCCSCCCCCCCCCCC--------------------CCC----SCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS-
T ss_pred EEEecccccccccccc--------------------ccc----ccCCccccccccccccccccceecCCCCeEEEEeeC-
Confidence 6654322111000000 000 00011111100 0011345599999999976
Q ss_pred eCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeee
Q psy2148 1080 PKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTA 1138 (1884)
Q Consensus 1080 ~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~ 1138 (1884)
|.|.|.|+|||+.+..... ....|.|.++..+|+|.|+|.|.|..|..
T Consensus 132 ----p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 132 ----TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp ----SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred ----CCCeEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 6788999999999875432 22369999999999999999999999976
No 220
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.71 E-value=8.5e-17 Score=179.81 Aligned_cols=173 Identities=20% Similarity=0.293 Sum_probs=128.8
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EE---c---------cCCCcEEEEeeCCeEEEEEccCC
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KA---L---------SAGSRIKTINDFGFVILEINDVY 982 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~---i---------~~~~~~~~~~~~~~~~L~I~~~~ 982 (1884)
|.++..+.++.+.+|++++|.|.+. +.|.+.|.|+|++ .. + ....|+.+...++.+.|.|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 79 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQAS--QSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLE 79 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCC
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEec--CCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCC
Confidence 5677778899999999999999998 5688899999942 11 1 11467877777778899999999
Q ss_pred CCCCeEEEEEEEcCCe---eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeee
Q psy2148 983 LRDSGLYTCKATNKHG---EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQ 1059 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G---~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1059 (1884)
.+|+|.|+|.|.|..| .....+.|.|...+ .+|.+...
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~---------------------------------------~~p~v~~~ 120 (213)
T 3nl4_L 80 CADAATYYCQSTYENPTYVSFGGGTEVGVKGDP---------------------------------------VAPTVLIF 120 (213)
T ss_dssp GGGCEEEEEEECCSSTTTCEECCCEEEEEECCC---------------------------------------BCCEEEEE
T ss_pred hHHCEEEEEecCCCCceeEEeCCCeEEEEeCCC---------------------------------------cCCeEEEe
Confidence 9999999999999877 44555677775411 34444433
Q ss_pred cCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEE---eeCc----EEEEEEcccCcCCcEEEEEEEE
Q psy2148 1060 LQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV---YDFG----FISLDMDYVYARDSGEYICRAT 1132 (1884)
Q Consensus 1060 ~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~---~~~~----~~~l~i~~~~~~d~G~Y~C~a~ 1132 (1884)
... ..+.+|+.++|.|.+.+ +.|.+.|.|+|+|..+..+...... ..++ ...|.|..+..+|+|.|+|.|.
T Consensus 121 ~~~-~~~~~g~~v~l~C~~~g-~~P~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 121 PPS-ADLVATGTVTIVCVANK-YFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp CCC-HHHHTTSEEEEEEEEEE-EBSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred CCc-hhhccCCcEeEEEEEec-ccCCcEEEEEeCCccCCCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 322 34557999999999983 2788999999999998754201100 0111 2469999999999999999999
No 221
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.71 E-value=5.8e-17 Score=180.55 Aligned_cols=176 Identities=15% Similarity=0.267 Sum_probs=126.3
Q ss_pred eeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEc------------cCCCcEEEEeeCCeEEEEEccCCCC
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKAL------------SAGSRIKTINDFGFVILEINDVYLR 984 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~ 984 (1884)
+.. +.++.+.+|++++|.|.+. +.|.+.|.|+|+ |..+ ....++.+...++.+.|.|.+++.+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 80 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKAS--ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEAD 80 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred EEC-CCcEEEcCCCCEEEEeeCC--CccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHH
Confidence 445 7888999999999999998 667778999994 3222 1235777766667779999999999
Q ss_pred CCeEEEEEEEcCCeeEEE-EEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCC
Q psy2148 985 DSGLYTCKATNKHGEATT-SCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDN 1063 (1884)
Q Consensus 985 D~G~Y~C~a~N~~G~~~~-~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 1063 (1884)
|+|.|+|.|.|..|.... .+.|.|.... .+|.+......
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------------------~~P~v~~~~~~- 120 (210)
T 1lk3_L 81 DTAIYFCQQSWNGPLTFGAGTKLELKRAD---------------------------------------AAPTVSIFPPS- 120 (210)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEECCCC---------------------------------------BCCEEEEECCC-
T ss_pred HCeEEEEEEEcCCCceeCCCEEEEEcCCC---------------------------------------cCCeEEEECCc-
Confidence 999999999998875432 3467775321 23444433322
Q ss_pred cCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceE--EE-eeCc----EEEEEEcccCcCCcEEEEEEEEcCC
Q psy2148 1064 LDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVK--TV-YDFG----FISLDMDYVYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1064 ~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~--~~-~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 1135 (1884)
..+.+|+.++|.|.+.+ ..|. +.|.|+|||+.+..+.... .. ..++ .+.|.|..+..+|+|.|+|.|.|..
T Consensus 121 ~~~~~g~~v~l~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 199 (210)
T 1lk3_L 121 TEQLATGGASVVCLMNN-FYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKT 199 (210)
T ss_dssp HHHHTTTEEEEEEEEEE-EBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred hhhccCCcEEEEEEEEe-EeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecC
Confidence 22347999999999984 2344 4899999999987651111 11 1122 2479999999999999999999987
Q ss_pred eee
Q psy2148 1136 GTA 1138 (1884)
Q Consensus 1136 G~~ 1138 (1884)
...
T Consensus 200 ~~~ 202 (210)
T 1lk3_L 200 SSS 202 (210)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
No 222
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.71 E-value=6.1e-17 Score=180.99 Aligned_cols=177 Identities=14% Similarity=0.139 Sum_probs=134.0
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC---ee-----------cCCCCCeEEEEeCceeEEEEcccccC
Q psy2148 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED---FP-----------ITSSPDFQIHTFSTKSILIMRQVFME 1705 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~---~~-----------~~~~~~~~~~~~~~~~~L~i~~v~~~ 1705 (1884)
|.+...+..+.+.+|+++.|.|.+.|.|.+.+.|+|.+ .+ .....++.+.......+|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE 81 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence 45666678889999999999999999999999999832 11 11245677776667789999999999
Q ss_pred CCeEEEEEEEeCCce-EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCC--cEEEEEeCCEe
Q psy2148 1706 DSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP--LDVYWLKNGKK 1782 (1884)
Q Consensus 1706 DsG~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~k~~~~ 1782 (1884)
|+|.|.|.|.|..+. ......|.|.... .+|.+...+....+..|+.++|.|.+.|.|+ +.|.|+|+|..
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~ 154 (213)
T 3r06_A 82 DIGSYYCQQYYNYPWTFGPGTKLEIKRAD-------AKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSE 154 (213)
T ss_dssp GCSEEEEEECSSSSCEECCCEEEEECCCC-------BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred cCEEEEEecccCCceEEcCCceEEEeccC-------CCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcc
Confidence 999999999987653 3345667774322 5888887777777778999999999998654 48999999999
Q ss_pred cCCCC--CeEEee--cCC---eEEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1783 IIPDI--RYKTLE--EDN---LFTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1783 l~~~~--~~~~~~--~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
+..+. ...... ++. ...|.|.....+|.|.|+|.|.|....
T Consensus 155 l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~ 202 (213)
T 3r06_A 155 KRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST 202 (213)
T ss_dssp ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred cCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence 86541 111111 111 236888888888999999999998754
No 223
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.70 E-value=6.8e-17 Score=183.44 Aligned_cols=180 Identities=16% Similarity=0.293 Sum_probs=129.0
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCC-cEEEEeeCCEEcc---------C----CCcEE----------EEeeCCeEEE
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPS-MTVEWFHNGKALS---------A----GSRIK----------TINDFGFVIL 976 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~-~~v~W~~~g~~i~---------~----~~~~~----------~~~~~~~~~L 976 (1884)
..+.++.+.+|+++.|.|.+. +.|. +.|.|+|++.... . ..++. +..+ + .|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~--~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~--~L 79 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPT--GTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-G--RL 79 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCB--SCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-C--CE
T ss_pred cCCCcEEEEcCCCEEEecccC--CCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-c--eE
Confidence 345678899999999999998 5664 8999998654321 1 11222 2222 2 39
Q ss_pred EEccCCCCCCeEEEEEEEcCC-eeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCc
Q psy2148 977 EINDVYLRDSGLYTCKATNKH-GEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055 (1884)
Q Consensus 977 ~I~~~~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1055 (1884)
.|.+++.+|+|.|+|.|.|.. |..+..+.|.|..+|. .|.
T Consensus 80 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~---------------------------------------~~~ 120 (231)
T 2pet_A 80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPE---------------------------------------ATE 120 (231)
T ss_dssp EESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC---------------------------------------CCE
T ss_pred EEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCC---------------------------------------CcE
Confidence 999999999999999999997 8888899999986543 233
Q ss_pred eeeecCCCcCcCCCCcE-EEEEEEeeCCCCCcEEEEEECCEeccCCC----ceEEEee-----Cc----EEEEEEcccCc
Q psy2148 1056 FTSQLQDNLDVPEAGKV-HFDCRLEPKSDPTMRIDWFFNGRPFATGS----RVKTVYD-----FG----FISLDMDYVYA 1121 (1884)
Q Consensus 1056 ~~~~~~~~~~v~~g~~~-~l~C~v~~~~~p~~~v~W~k~~~~l~~~~----~~~~~~~-----~~----~~~l~i~~~~~ 1121 (1884)
+.... ..+.+.+|+.+ .|.|.+. .+.|.+.|.|+|+|..+.... ++.+... .+ ...|.|.....
T Consensus 121 ~~~~~-~~~~~~~g~~~~~l~C~~~-~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~ 198 (231)
T 2pet_A 121 VSPNK-GTLSVMEDSAQEIATCNSR-NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKD 198 (231)
T ss_dssp EEECC-SSCCTTCCSEEEEEEEEEE-EEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGG
T ss_pred EecCC-cceeecCCCceEEEEEEeE-CcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchh
Confidence 33322 23667789988 9999993 278889999999999998665 4443321 11 25688876666
Q ss_pred CCcEEEEEEEEc-----CCee-eEEEEEEEE
Q psy2148 1122 RDSGEYICRATN-----KWGT-AMTKAKVIC 1146 (1884)
Q Consensus 1122 ~d~G~Y~C~a~n-----~~G~-~~~~~~l~v 1146 (1884)
+|+|.|+|.|.| ..|. .+..+.|.|
T Consensus 199 dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 199 DRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp GGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred hCCceEEEEEEcCCcccccccccccceEEEE
Confidence 679999999999 5565 444455543
No 224
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=182.53 Aligned_cols=186 Identities=15% Similarity=0.169 Sum_probs=138.6
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEecc--CCCeEEEEeCC--eec-----------------CCCCCeEEEEe--Cc
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--FPI-----------------TSSPDFQIHTF--ST 1693 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~ 1693 (1884)
..++.+...+..+.+.+|++++|.|.+.+. |.+.+.|+|.. ..+ ....++.+... ..
T Consensus 4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 83 (256)
T 3juy_B 4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN 83 (256)
T ss_dssp ---CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred ccceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence 346788888999999999999999999983 77899999742 110 11235666543 34
Q ss_pred eeEEEEcccccCCCeEEEEEEEeC------------CceEEEEEEEEEEecccCCC-----CCCCCCeEEeccCceEEcC
Q psy2148 1694 KSILIMRQVFMEDSGVFAVIAENR------------GGKAKCSANLVVEEKRQGGR-----GGVVPPSFLTTISSAVINV 1756 (1884)
Q Consensus 1694 ~~~L~i~~v~~~DsG~Y~C~a~n~------------~g~~~~~~~l~V~~~~~~~~-----~~~~~P~~~~~~~~~~~~~ 1756 (1884)
..+|.|.+++.+|+|.|.|.+.|. .+.......|.|...+.... ....+|.+...+....+.+
T Consensus 84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (256)
T 3juy_B 84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP 163 (256)
T ss_dssp EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECT
T ss_pred EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeC
Confidence 567999999999999999999986 34445566788875322100 0012567888888999999
Q ss_pred CceEEEEEEEecCCC-cEEEEEeC--CEecC------------CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCC
Q psy2148 1757 GQLARFDAKISATKP-LDVYWLKN--GKKII------------PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNA 1821 (1884)
Q Consensus 1757 G~~~~l~C~~~g~p~-p~v~W~k~--~~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~ 1821 (1884)
|++++|.|.+.+.|. +.|.|+|. +..+. ...|+.+...+..++|+|.+++.+|+|.|+|.|.|..
T Consensus 164 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 243 (256)
T 3juy_B 164 GERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS 243 (256)
T ss_dssp TSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred CCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence 999999999999886 89999983 32221 2457777667777899999999999999999999965
Q ss_pred e
Q psy2148 1822 G 1822 (1884)
Q Consensus 1822 G 1822 (1884)
+
T Consensus 244 ~ 244 (256)
T 3juy_B 244 S 244 (256)
T ss_dssp C
T ss_pred C
Confidence 4
No 225
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.70 E-value=6.6e-18 Score=188.65 Aligned_cols=172 Identities=14% Similarity=0.133 Sum_probs=129.2
Q ss_pred CCceeecCCCeEEEEEEEeccCCCeEEEEeCC--eecC------------CCCCeEEEEeCceeEEEEcccccCCCeEEE
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPIT------------SSPDFQIHTFSTKSILIMRQVFMEDSGVFA 1711 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~ 1711 (1884)
+..+.+.+|++++|.|.+.+.|.+.+.|+|++ ..+. ...++.+........|.|.+++.+|+|.|.
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 67788999999999999999998899999853 3221 135677766667789999999999999999
Q ss_pred EEEEeC-CceE--EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CC-cEEEEEeCCEecCCC
Q psy2148 1712 VIAENR-GGKA--KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LDVYWLKNGKKIIPD 1786 (1884)
Q Consensus 1712 C~a~n~-~g~~--~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~k~~~~l~~~ 1786 (1884)
|.|.|. .+.. .....|.|...+. .+|.+...+....+.+|+.++|.|.+.|. |. |.|+|+|+|..+..+
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~------~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~ 159 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPK------SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG 159 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCC------BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred EEEEcccCcccccCCceEEEEccCCC------CCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC
Confidence 999973 2222 2345677754322 47888765555556689999999999986 55 799999999998654
Q ss_pred CCeE-Eeec-CC---eEEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1787 IRYK-TLEE-DN---LFTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1787 ~~~~-~~~~-~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
.... ...+ ++ ...|.|.++..+|+|.|+|.|.|..+.
T Consensus 160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 160 VKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp CBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred eecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 3211 1111 11 235999999999999999999999876
No 226
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.70 E-value=1.1e-16 Score=179.88 Aligned_cols=183 Identities=17% Similarity=0.275 Sum_probs=125.7
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCC-CCcEEEEeeCC---EE------------c---cCCCcEEEEeeCCeEEEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTND-PSMTVEWFHNG---KA------------L---SAGSRIKTINDFGFVILE 977 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~-P~~~v~W~~~g---~~------------i---~~~~~~~~~~~~~~~~L~ 977 (1884)
|.++..+ .+.+.+|++++|.|.+. +. |.+.|.|+|.. .. . ....|+.+....+...|.
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~ 78 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLN--SQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLS 78 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEEC--GGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEE
T ss_pred CeEEeCC-cEEECCCCcEEEEEECC--CCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEE
Confidence 4566666 88999999999999998 55 78899999931 10 1 012467666666777899
Q ss_pred EccCCCCCCeEEEEEEEcCCe-----eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCC
Q psy2148 978 INDVYLRDSGLYTCKATNKHG-----EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPN 1052 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~~G-----~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1884)
|.+++.+|+|.|+|.|.|..| .....+.|.|...+. .
T Consensus 79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------------~ 120 (218)
T 3s96_B 79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPK--------------------------------------S 120 (218)
T ss_dssp ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC--------------------------------------B
T ss_pred EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCC--------------------------------------C
Confidence 999999999999999999876 333456788874321 2
Q ss_pred CCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceE--EEeeCc---EEEEEEcccCcCCcEE
Q psy2148 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVK--TVYDFG---FISLDMDYVYARDSGE 1126 (1884)
Q Consensus 1053 ~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~--~~~~~~---~~~l~i~~~~~~d~G~ 1126 (1884)
+|.+...... ..+..|+.++|.|.+.+ ..|.+ .|.|+|+|..+..+.... ...++. ...|.|.....+|+|.
T Consensus 121 ~P~~~~~~~~-~~~~~~~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~ 198 (218)
T 3s96_B 121 TPTLTVFPPS-SEELKENKATLVCLISN-FSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNS 198 (218)
T ss_dssp CCEEEEECCC-HHHHHTTEEEEEEEEEE-EBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSC
T ss_pred CceEEeeCCC-cccccCCcEEEEEEECc-ccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCe
Confidence 4444432222 33445789999999983 25666 899999999987632211 111111 1348888888889999
Q ss_pred EEEEEEcCCeeeEEEE
Q psy2148 1127 YICRATNKWGTAMTKA 1142 (1884)
Q Consensus 1127 Y~C~a~n~~G~~~~~~ 1142 (1884)
|+|.|.|..|....++
T Consensus 199 Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 199 FTCQVTHEGDTVEKSL 214 (218)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEEEeCCCcccccc
Confidence 9999999998766543
No 227
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.70 E-value=2e-16 Score=176.59 Aligned_cols=180 Identities=17% Similarity=0.244 Sum_probs=127.2
Q ss_pred eeeecCCceeecCCCeEEEEEEEeeCCCC---CcEEEEeeCC--EEc------------cCCCcEEEEeeCCeEEEEEcc
Q psy2148 918 EFLTTPTDLTLAESTLAHFECRLTPTNDP---SMTVEWFHNG--KAL------------SAGSRIKTINDFGFVILEIND 980 (1884)
Q Consensus 918 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~P---~~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~I~~ 980 (1884)
.++. +.++.+.+|++++|.|.+. +.| .+.|.|+|++ ..+ ....|+.+...++...|.|.+
T Consensus 3 ~v~~-p~~~~v~~G~~v~L~C~~~--~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 79 (212)
T 1q0x_L 3 VVTQ-ESALTTSPGETVTLTCRSS--TGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITG 79 (212)
T ss_dssp CEEE-CSEEEECTTCCEEEEEEES--SSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred eEEC-CCeEeecCCCCEEEEEEec--ccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECC
Confidence 3455 7888999999999999998 445 4789999962 222 224577766666777999999
Q ss_pred CCCCCCeEEEEEEEcCCeeEE-EEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeee
Q psy2148 981 VYLRDSGLYTCKATNKHGEAT-TSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQ 1059 (1884)
Q Consensus 981 ~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1059 (1884)
++.+|+|.|+|.|.|..|... ....|.|...+. .+|.+...
T Consensus 80 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~--------------------------------------~~P~v~~~ 121 (212)
T 1q0x_L 80 AQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPK--------------------------------------SSPTVTLF 121 (212)
T ss_dssp CCGGGCEEEEEEEECSSCEEECCCEEEEECCSCC--------------------------------------BCCEEEEE
T ss_pred CCccCCEEEEEEEecCchhhcCCCeEEEEecCCC--------------------------------------CCCeeEEe
Confidence 999999999999999877432 334666643211 24555443
Q ss_pred cCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceE--EEeeCc----EEEEEEcccCcCCcEEEEEEEE
Q psy2148 1060 LQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVK--TVYDFG----FISLDMDYVYARDSGEYICRAT 1132 (1884)
Q Consensus 1060 ~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~--~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~ 1132 (1884)
... ..+..|+.++|.|.+.+. .|. ..|.|+|||+.+..+.... ....++ ...|.|.....+|+|.|+|.|.
T Consensus 122 ~~~-~~~~~g~~v~L~C~~~g~-~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~ 199 (212)
T 1q0x_L 122 PPS-SEELSTAKATLVCTITDF-YPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVT 199 (212)
T ss_dssp CCC-HHHHTTTEEEEEEEEEEE-BSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEE
T ss_pred CCC-HHHccCCcEEEEEEEEEE-eCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEE
Confidence 332 233468899999999842 344 3899999999987652211 111222 2468999999999999999999
Q ss_pred cCCeeeEE
Q psy2148 1133 NKWGTAMT 1140 (1884)
Q Consensus 1133 n~~G~~~~ 1140 (1884)
|.......
T Consensus 200 n~~~~~~~ 207 (212)
T 1q0x_L 200 HEGHSSNK 207 (212)
T ss_dssp ETTEEEEE
T ss_pred eCCcceee
Confidence 99776443
No 228
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.70 E-value=1e-16 Score=184.36 Aligned_cols=195 Identities=16% Similarity=0.153 Sum_probs=140.1
Q ss_pred eeecCCceeecCCCeEEEEEEEeccC--CCeEEEEeC--Cee---c--------------CCCCCeEEEEeC--ceeEEE
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRE--DFP---I--------------TSSPDFQIHTFS--TKSILI 1698 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~--~~~---~--------------~~~~~~~~~~~~--~~~~L~ 1698 (1884)
++..+.++.+.+|++++|.|.+.|.+ .+.+.|+|. +.. + ....++.+.... +..+|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 44556778899999999999999854 789999992 211 1 112456655443 356799
Q ss_pred EcccccCCCeEEEEEEEeCCceE-EEEEEEEEEecccCCC-----CCCCCCeEEeccCceEEcCCceEEEEEEEecCCCc
Q psy2148 1699 MRQVFMEDSGVFAVIAENRGGKA-KCSANLVVEEKRQGGR-----GGVVPPSFLTTISSAVINVGQLARFDAKISATKPL 1772 (1884)
Q Consensus 1699 i~~v~~~DsG~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~-----~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p 1772 (1884)
|.+++.+|+|.|.|.+.|..+.. .....|.|........ ....+|.+...+....+.+|++++|.|.+.+.|.+
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~ 163 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR 163 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence 99999999999999999965554 3456777774200000 00136778888888999999999999999998887
Q ss_pred ----EEEEEeC--CEecC------------CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEE-EEEEEEEE
Q psy2148 1773 ----DVYWLKN--GKKII------------PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEAR-CEAELVVQ 1833 (1884)
Q Consensus 1773 ----~v~W~k~--~~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~ 1833 (1884)
.+.|+|+ +..+. ...|+.+...+..++|+|.+++.+|+|.|+|.|.|..+... .-..|.|.
T Consensus 164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~ 243 (253)
T 3uzq_A 164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK 243 (253)
T ss_dssp TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEc
Confidence 8999995 22221 12566666666778999999999999999999999765433 23578887
Q ss_pred ecC
Q psy2148 1834 SKK 1836 (1884)
Q Consensus 1834 ~~~ 1836 (1884)
+.+
T Consensus 244 ~~~ 246 (253)
T 3uzq_A 244 RPL 246 (253)
T ss_dssp CC-
T ss_pred CCC
Confidence 643
No 229
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.70 E-value=6e-17 Score=155.33 Aligned_cols=98 Identities=28% Similarity=0.449 Sum_probs=90.8
Q ss_pred cCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 913 LGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 913 ~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
...||.|+..++++++.+|+++.|.|.+. |.|.|.|+|+|||.+|..+.++.+..+++.++|.|.+++.+|+|.|+|+
T Consensus 10 ~~~pP~f~~~p~~~~v~~G~~~~l~C~~~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 87 (107)
T 3knb_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVL--GEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEE--EESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCCEEEeCCCcEEEeCCCcEEEEEEEE--EecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEE
Confidence 35689999999999999999999999998 6788899999999999999999998888889999999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeec
Q psy2148 993 ATNKHGEATTSCKLTVKGRQ 1012 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~ 1012 (1884)
|+|.+|..+.++.|.|..+|
T Consensus 88 a~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 88 ARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EEETTEEEEEEEEEEEEC--
T ss_pred EEECCCEEEEEEEEEEEcCC
Confidence 99999999999999998654
No 230
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.70 E-value=1.8e-16 Score=180.68 Aligned_cols=181 Identities=13% Similarity=0.089 Sum_probs=136.8
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--e------------ecCCCCCeEEEEeCceeEEEEccccc
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F------------PITSSPDFQIHTFSTKSILIMRQVFM 1704 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~------------~~~~~~~~~~~~~~~~~~L~i~~v~~ 1704 (1884)
.+.+...+..+.+.+|+++.|.|.+.+.|.+.+.|+|++ . ......++.+.......+|.|.+++.
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 103 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 103 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence 345666677889999999999999999999999999843 1 11224577777667788999999999
Q ss_pred CCCeEEEEEEEeCCce-EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CC-CcEEEEEeCCE
Q psy2148 1705 EDSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TK-PLDVYWLKNGK 1781 (1884)
Q Consensus 1705 ~DsG~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p-~p~v~W~k~~~ 1781 (1884)
+|+|.|.|.+.|..+. ......|.|.... .+|.+...+....+..|+.++|.|.+.| .| .|.|+|+|+|.
T Consensus 104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~ 176 (237)
T 3sob_L 104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTV-------AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNA 176 (237)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEECCC-------BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred hhCeEEEEeeccCCceEEcCcEEEEEecCC-------CCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCC
Confidence 9999999999987653 3344577776522 5788877666666667999999999998 55 58999999999
Q ss_pred ecCCCC--CeEEee-cCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEEE
Q psy2148 1782 KIIPDI--RYKTLE-EDN----LFTLLIIEAVVEDSGAYECVAMNNAGEARC 1826 (1884)
Q Consensus 1782 ~l~~~~--~~~~~~-~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~ 1826 (1884)
.+..+. ...... .++ ...|.|.....+|.|.|+|.|.|.......
T Consensus 177 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 228 (237)
T 3sob_L 177 LQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV 228 (237)
T ss_dssp ECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred CCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCce
Confidence 986531 011111 111 347899999999999999999999865443
No 231
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.70 E-value=2.5e-16 Score=184.07 Aligned_cols=192 Identities=14% Similarity=0.155 Sum_probs=139.7
Q ss_pred eeecCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--eec-----------------CCCCCeEEEEe--CceeEEE
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI-----------------TSSPDFQIHTF--STKSILI 1698 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~L~ 1698 (1884)
++..+....+.+|++++|.|.+.|.| .+.+.|+|++ ..+ ....++.+... ....+|.
T Consensus 29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 108 (282)
T 1qok_A 29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ 108 (282)
T ss_dssp EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence 34456678899999999999999885 6899999964 111 01245665543 3457899
Q ss_pred EcccccCCCeEEEEEEEeCCc---e--EEEEEEEEEEecccCC-----CCCCCCCeEEeccCceEEcCCceEEEEEEEec
Q psy2148 1699 MRQVFMEDSGVFAVIAENRGG---K--AKCSANLVVEEKRQGG-----RGGVVPPSFLTTISSAVINVGQLARFDAKISA 1768 (1884)
Q Consensus 1699 i~~v~~~DsG~Y~C~a~n~~g---~--~~~~~~l~V~~~~~~~-----~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g 1768 (1884)
|.+++.+|+|.|.|.+.|..| . ....+.|.|...+... .....+|.+...+....+.+|++++|.|.+.+
T Consensus 109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 188 (282)
T 1qok_A 109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS 188 (282)
T ss_dssp ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence 999999999999999999876 1 2234578887643100 00012566777788888999999999999999
Q ss_pred CCCcEEEEEe--CCEecC------------CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeE-EEEEEEEEE
Q psy2148 1769 TKPLDVYWLK--NGKKII------------PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEA-RCEAELVVQ 1833 (1884)
Q Consensus 1769 ~p~p~v~W~k--~~~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 1833 (1884)
.| +.|.|+| +|..+. ...|+.+...+...+|+|.++..+|+|.|+|.|.|..+.. .....|.|.
T Consensus 189 ~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 267 (282)
T 1qok_A 189 SV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267 (282)
T ss_dssp CC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence 99 8999999 565441 2457776656667799999999999999999999864422 234678886
Q ss_pred e
Q psy2148 1834 S 1834 (1884)
Q Consensus 1834 ~ 1834 (1884)
+
T Consensus 268 ~ 268 (282)
T 1qok_A 268 R 268 (282)
T ss_dssp -
T ss_pred c
Confidence 5
No 232
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.69 E-value=3e-17 Score=186.44 Aligned_cols=186 Identities=9% Similarity=0.041 Sum_probs=132.7
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCe-EEEEeCceeEEEEcccccCCCeEEEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDF-QIHTFSTKSILIMRQVFMEDSGVFAVIAE 1715 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~ 1715 (1884)
..+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+...... ..........|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 35677776665 67889999999999985 57899999999754211000 00011235679999999999999999998
Q ss_pred eCCc-----eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeE
Q psy2148 1716 NRGG-----KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYK 1790 (1884)
Q Consensus 1716 n~~g-----~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~ 1790 (1884)
|..+ ..+..+.|.|.+.. .+|.+...+. ..+.+|++++|.|.+.+.| +.+.|+|+|..+....+..
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~-------~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~ 153 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLY-------EKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAG 153 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSS-------CCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCB
T ss_pred ccCCCccccccCCCEEEecccCC-------CCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccc
Confidence 7421 23556788887532 3677776654 4678999999999998864 6999999998775433221
Q ss_pred Eee-cCCeEEEEEccCCCCCCEEEEEEEEeCCe-----eEEEEEEEEEEec
Q psy2148 1791 TLE-EDNLFTLLIIEAVVEDSGAYECVAMNNAG-----EARCEAELVVQSK 1835 (1884)
Q Consensus 1791 ~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V~~~ 1835 (1884)
... ......|.|.+++ |+|.|+|.|.|..+ ..+..+.|.|.+.
T Consensus 154 ~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~ 202 (257)
T 1b6u_A 154 PKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGN 202 (257)
T ss_dssp CCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCC
T ss_pred cccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEecc
Confidence 111 1235689999998 99999999998632 2345577888774
No 233
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.69 E-value=7e-17 Score=180.83 Aligned_cols=173 Identities=12% Similarity=0.054 Sum_probs=126.3
Q ss_pred CCceeecCCCeEEEEEEE-eccC-CCeEEEEeCC--eec------------CCCCCeEEEEeCceeEEEEcccccCCCeE
Q psy2148 1646 IQPCRAFEQDQARFEVEF-DGDP-LPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSGV 1709 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~-~g~p-~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~DsG~ 1709 (1884)
+..+.+.+|++++|.|.+ .+.+ .+.|.|+|++ ..+ ....++.+.......+|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 567889999999999996 4443 6899999954 211 11346766666677899999999999999
Q ss_pred EEEEEEeCCc--eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EEEEEeCCEecCC
Q psy2148 1710 FAVIAENRGG--KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLKNGKKIIP 1785 (1884)
Q Consensus 1710 Y~C~a~n~~g--~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~k~~~~l~~ 1785 (1884)
|.|.|.|..+ .......|.|.... .+|.+...+.......|+.++|.|.+.| .|.| .|+|+|+|+.+..
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~-------~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~ 159 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTV-------AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG 159 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCC-------BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCC-------CCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCC
Confidence 9999999876 22334567775322 4788776544433446899999999998 5665 8999999999865
Q ss_pred CCCe--EEee-cCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEE
Q psy2148 1786 DIRY--KTLE-EDN----LFTLLIIEAVVEDSGAYECVAMNNAGEAR 1825 (1884)
Q Consensus 1786 ~~~~--~~~~-~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 1825 (1884)
+... .... .++ ...|.|..+..+|+|.|+|.|.|......
T Consensus 160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 206 (216)
T 2xzc_L 160 NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 206 (216)
T ss_dssp SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred CeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence 5111 1111 112 23799999999999999999999986543
No 234
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.69 E-value=1.6e-17 Score=187.11 Aligned_cols=181 Identities=14% Similarity=0.275 Sum_probs=130.3
Q ss_pred CceeecCCCeEEEEEEEeccCC-----CeEEEEeCCeec-------------CCCCCeEEEE---eCceeEEEEcccccC
Q psy2148 1647 QPCRAFEQDQARFEVEFDGDPL-----PTIKWFREDFPI-------------TSSPDFQIHT---FSTKSILIMRQVFME 1705 (1884)
Q Consensus 1647 ~~~~v~~G~~~~l~C~~~g~p~-----~~i~W~~~~~~~-------------~~~~~~~~~~---~~~~~~L~i~~v~~~ 1705 (1884)
+.+.+.+|+++.|.|.+.+.|. +.+.|++++... ....+..+.. ..++.+|.|.+++.+
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 3567889999999999998864 789999987432 0112222111 012567999999999
Q ss_pred CCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEE-ecCCCcEEEEEe-CCEec
Q psy2148 1706 DSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLK-NGKKI 1783 (1884)
Q Consensus 1706 DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k-~~~~l 1783 (1884)
|+|.|.|.+.|. +.....+.|.|...+ .+|.+...+ ...+..|+.++|.|.+ .|.|.|.|.|++ ++..+
T Consensus 83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~-------~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~ 153 (222)
T 4i0k_A 83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPY-------SKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPL 153 (222)
T ss_dssp GCSCEEEEEEEC-CCCCCCCCCCCCBCC-------CCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred cCEEEEEEEEeC-CCceEEEEEEEEcCC-------CCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccC
Confidence 999999999986 444556677776532 356666544 4567889999999999 889999999999 45555
Q ss_pred CCCCCeEEe--ecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecC
Q psy2148 1784 IPDIRYKTL--EEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1784 ~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
......... .++....|.|.++..+|.|.|+|.|.|..|....++.|.|.++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 208 (222)
T 4i0k_A 154 TGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP 208 (222)
T ss_dssp CSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred CCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence 433322222 23334568999999999999999999999999999999998754
No 235
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.69 E-value=2.5e-16 Score=181.29 Aligned_cols=195 Identities=16% Similarity=0.227 Sum_probs=137.5
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--ee-------------cCCCCCeEEEE--eCceeEEEEccc
Q psy2148 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP-------------ITSSPDFQIHT--FSTKSILIMRQV 1702 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~-------------~~~~~~~~~~~--~~~~~~L~i~~v 1702 (1884)
..++..+..+.+.+|++++|.|.+.+.|.+.+.|+|.. .. .....++.+.. .....+|.|.++
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 83 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV 83 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence 35666777889999999999999999999999999832 11 01133555532 244568999999
Q ss_pred ccCCCeEEEEEEEeCCce----EEEEEEEEEEecccC----------CCCCCCCCeEEeccCceEEcCCceEEEEEEEec
Q psy2148 1703 FMEDSGVFAVIAENRGGK----AKCSANLVVEEKRQG----------GRGGVVPPSFLTTISSAVINVGQLARFDAKISA 1768 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~g~----~~~~~~l~V~~~~~~----------~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g 1768 (1884)
+.+|+|.|.|.+.|..+. ....+.|.|...... ......+|.+...+....+.+|++++|.|.+.+
T Consensus 84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 163 (256)
T 3tf7_C 84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN 163 (256)
T ss_dssp CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence 999999999999997542 233467788751000 000114778888888889999999999999998
Q ss_pred CCCcEEEEEeCC--Eec---C------------CCCCeEEee-cCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEE--EE
Q psy2148 1769 TKPLDVYWLKNG--KKI---I------------PDIRYKTLE-EDNLFTLLIIEAVVEDSGAYECVAMNNAGEARC--EA 1828 (1884)
Q Consensus 1769 ~p~p~v~W~k~~--~~l---~------------~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~--~~ 1828 (1884)
. .|.+.|+|+. ..+ . ...|+.+.. .....+|+|.+++.+|+|.|+|.|.|..|.... -.
T Consensus 164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt 242 (256)
T 3tf7_C 164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGS 242 (256)
T ss_dssp C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCE
T ss_pred C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCe
Confidence 7 7899999843 111 0 123444433 234568999999999999999999999875432 24
Q ss_pred EEEEEec
Q psy2148 1829 ELVVQSK 1835 (1884)
Q Consensus 1829 ~l~V~~~ 1835 (1884)
.|+|...
T Consensus 243 ~l~v~~~ 249 (256)
T 3tf7_C 243 KLTVLEL 249 (256)
T ss_dssp EEEEECG
T ss_pred EEEEEcc
Confidence 6777653
No 236
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.69 E-value=1.8e-16 Score=180.87 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=132.8
Q ss_pred eeeecCCceeecCCCeEEEEEEEeccC----CCeEEEEeCC--eec------------CCCCCeEEEEeCceeEEEEccc
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVEFDGDP----LPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQV 1702 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~~~g~p----~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~v 1702 (1884)
.+...+..+.+.+|++++|.|.+.|.| .+.|.|+|++ ..+ ....++.+...+...+|.|.++
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV 82 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence 355667788999999999999999998 7899999963 211 1234677766666778999999
Q ss_pred ccCCCeEEEEEEEeCCce-EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCC--cEEEEEeC
Q psy2148 1703 FMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP--LDVYWLKN 1779 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~k~ 1779 (1884)
+.+|+|.|.|.|.|..+. ....+.|.|...+... .++.+...+....+.+|++++|.|.+.|.|. +.|.|+|+
T Consensus 83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~----~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~ 158 (240)
T 1moe_A 83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGG----GGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ 158 (240)
T ss_dssp CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCC----CCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCC----CceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence 999999999999998654 4455678887532110 1344556677888999999999999999874 58999996
Q ss_pred --CEecC-----------------CCCCeEEeec--CCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1780 --GKKII-----------------PDIRYKTLEE--DNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1780 --~~~l~-----------------~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
+..+. ...++.+..+ .....|.|.+++.+|+|.|+|.|.+
T Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 159 RPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp CTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred CCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 22220 1346665543 4567999999999999999999985
No 237
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.69 E-value=2.5e-16 Score=181.49 Aligned_cols=191 Identities=16% Similarity=0.188 Sum_probs=138.5
Q ss_pred CCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--ee---c--------------CCCCCeEEEEe--CceeEEEEccc
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I--------------TSSPDFQIHTF--STKSILIMRQV 1702 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~---~--------------~~~~~~~~~~~--~~~~~L~i~~v 1702 (1884)
+....+.+|++++|.|.+.|.| .+.+.|+|.. .. + ....++.+... ....+|.|.++
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (256)
T 3umt_A 9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL 88 (256)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence 4456789999999999999876 6899999842 11 1 01245665544 34567999999
Q ss_pred ccCCCeEEEEEEEeC----CceEEEEEEEEEEecccCC------CCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCc
Q psy2148 1703 FMEDSGVFAVIAENR----GGKAKCSANLVVEEKRQGG------RGGVVPPSFLTTISSAVINVGQLARFDAKISATKPL 1772 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~----~g~~~~~~~l~V~~~~~~~------~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p 1772 (1884)
+.+|+|.|.|.+.|. .+.....+.|.|.+.+... .....+|.+...+....+.+|++++|.|.+.+.|.+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 168 (256)
T 3umt_A 89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS 168 (256)
T ss_dssp CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT
T ss_pred CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc
Confidence 999999999999987 4444556778887421000 000026788888888999999999999999999999
Q ss_pred EEEEEeC--CEecC------------CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEE-EEEEEEEEecC
Q psy2148 1773 DVYWLKN--GKKII------------PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEAR-CEAELVVQSKK 1836 (1884)
Q Consensus 1773 ~v~W~k~--~~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~~~ 1836 (1884)
.|.|+|+ +..+. ...|+.+...+..++|+|.++..+|+|.|+|.|.|..+... ....|+|.+.+
T Consensus 169 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 169 NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence 9999994 22221 23577776677778999999999999999999999765433 34788887643
No 238
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.69 E-value=2.4e-16 Score=181.15 Aligned_cols=180 Identities=15% Similarity=0.144 Sum_probs=130.1
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCe-----e---------cCCCCCeEEEEeCceeEEEEcccccC
Q psy2148 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF-----P---------ITSSPDFQIHTFSTKSILIMRQVFME 1705 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~-----~---------~~~~~~~~~~~~~~~~~L~i~~v~~~ 1705 (1884)
..+...+..+.+.+|++++|.|.+.+.|.+.+.|+|+.. . .....++.+.......+|.|.++..+
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 345666778889999999999999999999999999531 1 11235676666677779999999999
Q ss_pred CCeEEEEEEEeCCceE-EEEEEEEEEecccCC---------CCCCCCCeEEeccCceEEcCCceEEEEEEEecCC--CcE
Q psy2148 1706 DSGVFAVIAENRGGKA-KCSANLVVEEKRQGG---------RGGVVPPSFLTTISSAVINVGQLARFDAKISATK--PLD 1773 (1884)
Q Consensus 1706 DsG~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~---------~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~ 1773 (1884)
|+|.|.|.+.|..+.. .....|.|...+... .....+|.+...+....+.+|++++|.|.+.+.| .+.
T Consensus 85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 164 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSW 164 (250)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSE
T ss_pred hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCE
Confidence 9999999999876542 234567776421000 0000234455566778899999999999999877 789
Q ss_pred EEEEeC--CEecC-----------------CCCCeEEeec--CCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1774 VYWLKN--GKKII-----------------PDIRYKTLEE--DNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1774 v~W~k~--~~~l~-----------------~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
|.|+|+ +..+. ...|+.+..+ ...++|+|.++..+|+|.|+|.|.|
T Consensus 165 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 165 MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 999998 44331 1256666533 4567899999999999999999998
No 239
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.69 E-value=2e-16 Score=182.08 Aligned_cols=196 Identities=19% Similarity=0.219 Sum_probs=129.3
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEcc----------------CCCcEEEEee--CCeEEEEEccCC
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKALS----------------AGSRIKTIND--FGFVILEINDVY 982 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i~----------------~~~~~~~~~~--~~~~~L~I~~~~ 982 (1884)
+..+.+.+|++|+|.|.+.+.+.+.+.|.|+|+ |..+. ...|+.+..+ .+..+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ 86 (257)
T ss_dssp ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence 345689999999999999843224689999995 22110 1357776653 456789999999
Q ss_pred CCCCeEEEEEEEcCCe-------eE--EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCC
Q psy2148 983 LRDSGLYTCKATNKHG-------EA--TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNP 1053 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G-------~~--~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1884)
.+|+|.|+|.|.|..| .. ...+.|+|...+... |..+ ......+
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~--~~~~-------------------------~~~~~~~ 139 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGS--GGGG-------------------------SGGGGSD 139 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSS--CCSS-------------------------SCCCCCE
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccc--cccc-------------------------cCCCccc
Confidence 9999999999999865 11 234577886543100 0000 0000011
Q ss_pred CceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEE--CCEecc------------CCCceEEEeeCcEEEEEEccc
Q psy2148 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFF--NGRPFA------------TGSRVKTVYDFGFISLDMDYV 1119 (1884)
Q Consensus 1054 p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k--~~~~l~------------~~~~~~~~~~~~~~~l~i~~~ 1119 (1884)
+.+... ...+.+.+|++++|.|.+. +.|.+.+.|+| +|..+. ...++....+.....|.|.++
T Consensus 140 ~~~~~~-p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 216 (257)
T 1f3r_B 140 IKLTQS-PSLLSASVGDRVTLSCKGS--QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSL 216 (257)
T ss_dssp ECSCEE-TSEECCCTTCCEEEEEECS--SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSC
T ss_pred eEEEcc-CCEEEEcCCCCEEEEEEEC--CcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCC
Confidence 222222 2236788999999999997 67778999999 665431 124555554556678999999
Q ss_pred CcCCcEEEEEEEEcCCeeeEEEEEEEEee
Q psy2148 1120 YARDSGEYICRATNKWGTAMTKAKVICKA 1148 (1884)
Q Consensus 1120 ~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~ 1148 (1884)
..+|+|.|.|.|.|....-.....|.|..
T Consensus 217 ~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~ 245 (257)
T 1f3r_B 217 QPEDVATYFCYQYNNGYTFGAGTKLELKA 245 (257)
T ss_dssp CGGGCSEEEEEEESSSEEECCCCEECCSS
T ss_pred ChhhCEEEEEEEeCCCCeECCCEEEEEeC
Confidence 99999999999999751111234555543
No 240
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.69 E-value=3.4e-16 Score=178.37 Aligned_cols=184 Identities=13% Similarity=0.143 Sum_probs=130.3
Q ss_pred eeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--ee---c---------CCCCCeEEEEeCceeEEEEcccccCC
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---------TSSPDFQIHTFSTKSILIMRQVFMED 1706 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~L~i~~v~~~D 1706 (1884)
.++..+..+.+.+|++++|.|.+.|.|.+.+.|+|+. .. + ....++.+...+...+|.|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence 4566677889999999999999999999999999953 11 1 12346776666667899999999999
Q ss_pred CeEEEEEEEeCCce-EEEEEEEEEEecccCC---CCCCCCCeEEeccCceEEcCCceEEEEEEEecCC--CcEEEEEeCC
Q psy2148 1707 SGVFAVIAENRGGK-AKCSANLVVEEKRQGG---RGGVVPPSFLTTISSAVINVGQLARFDAKISATK--PLDVYWLKNG 1780 (1884)
Q Consensus 1707 sG~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~---~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~k~~ 1780 (1884)
+|.|.|.+.|..+. ....+.|.|...+... .+...++.+...+....+.+|++++|.|.+.|.| .+.|.|+|++
T Consensus 83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~ 162 (242)
T 2znx_A 83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKF 162 (242)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeC
Confidence 99999999997553 2234577776532100 0000123344444456799999999999999976 5789999953
Q ss_pred --EecC----------------CCCCeEEee--cCCeEEEEEccCCCCCCEEEEEEEEeC--CeeE
Q psy2148 1781 --KKII----------------PDIRYKTLE--EDNLFTLLIIEAVVEDSGAYECVAMNN--AGEA 1824 (1884)
Q Consensus 1781 --~~l~----------------~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~--~G~~ 1824 (1884)
..+. ...|+.+.. .+...+|+|.+++.+|+|.|+|.|.|. +|..
T Consensus 163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~fG~g 228 (242)
T 2znx_A 163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDGDYXGQG 228 (242)
T ss_dssp TTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTSSCBCCC
T ss_pred CCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCCcccCCC
Confidence 3220 145666654 345679999999999999999999984 4543
No 241
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.68 E-value=5.4e-16 Score=178.03 Aligned_cols=182 Identities=17% Similarity=0.244 Sum_probs=128.1
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEc-----------------cCCCcEEEEee--CCeEEEEEc
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKAL-----------------SAGSRIKTIND--FGFVILEIN 979 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i-----------------~~~~~~~~~~~--~~~~~L~I~ 979 (1884)
..+.++.+.+|++|+|.|.+.+.+.+.+.|.|+|+ +..+ ....|+.+..+ ++...|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS 84 (256)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence 34567899999999999999843223679999994 3222 11357766553 456789999
Q ss_pred cCCCCCCeEEEEEEEcCCee-----EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCC
Q psy2148 980 DVYLRDSGLYTCKATNKHGE-----ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~G~-----~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1054 (1884)
+++.+|+|.|+|.|.|..|. ....+.|.|... |
T Consensus 85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~------------------------------------------~ 122 (256)
T 1nqb_A 85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSD------------------------------------------I 122 (256)
T ss_dssp SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCC------------------------------------------C
T ss_pred cCChhhCEEEEEEEeeccCccceeEEcCceeeeeccc------------------------------------------c
Confidence 99999999999999998763 223456777532 2
Q ss_pred ceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-----EEEEEE--CCEecc------------CCCceEEEeeCcEEEEE
Q psy2148 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-----RIDWFF--NGRPFA------------TGSRVKTVYDFGFISLD 1115 (1884)
Q Consensus 1055 ~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-----~v~W~k--~~~~l~------------~~~~~~~~~~~~~~~l~ 1115 (1884)
.+.... ..+.+.+|++++|.|.+. +.|.+ .|.|+| +|..+. ...++..........|.
T Consensus 123 ~v~~~p-~~~~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~ 199 (256)
T 1nqb_A 123 ELTQTP-LSLPVSLGDQASISCRSS--QSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLK 199 (256)
T ss_dssp CEEEEC-SEEEECTTCCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred cEEecC-cEEEEecCCcEEEEeEec--CcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEE
Confidence 222222 235678999999999997 55554 899999 665441 12455555555667899
Q ss_pred EcccCcCCcEEEEEEEEcCCeeeEE-EEEEEEe
Q psy2148 1116 MDYVYARDSGEYICRATNKWGTAMT-KAKVICK 1147 (1884)
Q Consensus 1116 i~~~~~~d~G~Y~C~a~n~~G~~~~-~~~l~v~ 1147 (1884)
|.+++.+|+|.|+|.|.|..+.... ...|.|.
T Consensus 200 I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 200 ISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred ECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 9999999999999999986543322 3456665
No 242
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.68 E-value=5.3e-16 Score=178.96 Aligned_cols=197 Identities=14% Similarity=0.158 Sum_probs=139.0
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEecc--CCCeEEEEeCC--e---ec-------------CCCCCeEEEEe--CceeE
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--F---PI-------------TSSPDFQIHTF--STKSI 1696 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~i~W~~~~--~---~~-------------~~~~~~~~~~~--~~~~~ 1696 (1884)
+...+..+....+.+|++++|.|.+.|. |.+.+.|+|.. . .+ ....++.+... ....+
T Consensus 8 ~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (257)
T 3gkz_A 8 KEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVY 87 (257)
T ss_dssp -CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred ccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEE
Confidence 3445556677789999999999999984 47899999842 1 11 12245665543 34568
Q ss_pred EEEcccccCCCeEEEEEEEeC----CceEEEEEEEEEEecccC----CCCCCCCCeEEeccCceEEcCCceEEEEEEEec
Q psy2148 1697 LIMRQVFMEDSGVFAVIAENR----GGKAKCSANLVVEEKRQG----GRGGVVPPSFLTTISSAVINVGQLARFDAKISA 1768 (1884)
Q Consensus 1697 L~i~~v~~~DsG~Y~C~a~n~----~g~~~~~~~l~V~~~~~~----~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g 1768 (1884)
|.|.+++.+|+|.|.|.|.|. .+.....+.|.|.+.... ......+|.+...+....+.+|++++|.|.+.+
T Consensus 88 L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 167 (257)
T 3gkz_A 88 LQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASS 167 (257)
T ss_dssp EEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESS
T ss_pred EEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEcc
Confidence 999999999999999999997 222334567888753110 000013577787788899999999999999999
Q ss_pred CCCc-EEEEEeC--CEecC------------CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEE-EEEEEE
Q psy2148 1769 TKPL-DVYWLKN--GKKII------------PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARC-EAELVV 1832 (1884)
Q Consensus 1769 ~p~p-~v~W~k~--~~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~V 1832 (1884)
.|.+ .+.|+|+ +..+. ...|+.+...+..++|.|.++..+|+|.|+|.|.|....... -..|.|
T Consensus 168 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v 247 (257)
T 3gkz_A 168 SVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEI 247 (257)
T ss_dssp CCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred CccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEE
Confidence 8887 8999984 33221 125666666667789999999999999999999986543322 246777
Q ss_pred Eec
Q psy2148 1833 QSK 1835 (1884)
Q Consensus 1833 ~~~ 1835 (1884)
...
T Consensus 248 ~~~ 250 (257)
T 3gkz_A 248 KRA 250 (257)
T ss_dssp CCC
T ss_pred EeC
Confidence 653
No 243
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.68 E-value=6.8e-16 Score=168.35 Aligned_cols=162 Identities=15% Similarity=0.272 Sum_probs=115.6
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEcc---CC---------------CcEEEEeeCCeEEEEEccCCC
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALS---AG---------------SRIKTINDFGFVILEINDVYL 983 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~---~~---------------~~~~~~~~~~~~~L~I~~~~~ 983 (1884)
.+..+.+.+|++|+|.|.+.+ +.+.+.|.|+|+|..|. .+ .|+.+.. ...|+|.+++.
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~-~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~sL~I~~v~~ 79 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPA-GEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ---SYSLQLSNLKM 79 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCC-CSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECT---TCCEEECSCCG
T ss_pred CCeEEEEEecCeEEEeccCCC-cccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECC---CeEEEECCCCc
Confidence 455678999999999999873 24557999999987652 11 1333331 23699999999
Q ss_pred CCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCC
Q psy2148 984 RDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDN 1063 (1884)
Q Consensus 984 ~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 1063 (1884)
+|+|.|+|.|.|..|.....+.|.|..++. .|.+....
T Consensus 80 ~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~---------------------------------------~p~i~~~~--- 117 (193)
T 2if7_A 80 EDTGSYRAQISTKTSAKLSSYTLRILRQLR---------------------------------------NIQVTNHS--- 117 (193)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEEECCCE---------------------------------------EEEEEECC---
T ss_pred ccCceEEEEEEecCCCeEEEEEEEEEccCC---------------------------------------CCeEecCc---
Confidence 999999999999999877788899875432 12222211
Q ss_pred cCcCCCC-cEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcC-CcEEEEEEEEcCCeeeEEE
Q psy2148 1064 LDVPEAG-KVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYAR-DSGEYICRATNKWGTAMTK 1141 (1884)
Q Consensus 1064 ~~v~~g~-~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~G~~~~~ 1141 (1884)
.....|. .++|.|.+.+ +.|.+.|.|+|+|+.+..+. .|.|.....+ |+|.|+|.|.|..|..+..
T Consensus 118 ~~~~~g~~~v~L~C~~~g-~~p~p~i~W~~~g~~l~~~~-----------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~ 185 (193)
T 2if7_A 118 QLFQNMTCELHLTCSVED-ADDNVSFRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAVSNLSFS 185 (193)
T ss_dssp C---CSSEEEEEEEEEES-CCTTCEEEEEETTEEEESSS-----------EEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred eeecCCCceEEEEEEEec-CCCceEEEEEeCCEEcCCCC-----------eEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence 1123455 8999999982 35688999999998875432 2455433444 8999999999999988554
No 244
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.68 E-value=3.2e-16 Score=175.06 Aligned_cols=179 Identities=16% Similarity=0.209 Sum_probs=128.0
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC---EE-----------ccCCCcEEEEeeCCeEEEEEccCC
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG---KA-----------LSAGSRIKTINDFGFVILEINDVY 982 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g---~~-----------i~~~~~~~~~~~~~~~~L~I~~~~ 982 (1884)
|.+...+..+.+.+|++++|.|.+. +.|.+.|.|+|.+ .. .....|+.+...++.+.|.|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 79 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQAS--QDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLE 79 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeC--CCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCC
Confidence 5677778889999999999999998 5588899999832 11 113567777766677899999999
Q ss_pred CCCCeEEEEEEEcCCee-EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecC
Q psy2148 983 LRDSGLYTCKATNKHGE-ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQ 1061 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1061 (1884)
.+|+|.|+|.|.|..|. ......|.|.... .+|.+.....
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------------------~~p~v~~~~~ 120 (213)
T 3r06_A 80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRAD---------------------------------------AKPTVSIFPP 120 (213)
T ss_dssp GGGCSEEEEEECSSSSCEECCCEEEEECCCC---------------------------------------BCCEEEEECC
T ss_pred cccCEEEEEecccCCceEEcCCceEEEeccC---------------------------------------CCceeeeeCC
Confidence 99999999999998653 3334567773211 3455544333
Q ss_pred CCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCC-ceE-EEe-eCc----EEEEEEcccCcCCcEEEEEEEEcC
Q psy2148 1062 DNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGS-RVK-TVY-DFG----FISLDMDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1062 ~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~-~~~-~~~-~~~----~~~l~i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
. ..+..|+.++|.|.+.+...|.+.|.|+|+|..+..+. ... ... .++ ...|.|.....+|+|.|+|.|.|.
T Consensus 121 ~-~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~ 199 (213)
T 3r06_A 121 S-SEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHK 199 (213)
T ss_dssp C-HHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEET
T ss_pred C-ceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEec
Confidence 3 33446888999999984322246899999999987642 111 111 112 246888888888999999999998
Q ss_pred Cee
Q psy2148 1135 WGT 1137 (1884)
Q Consensus 1135 ~G~ 1137 (1884)
...
T Consensus 200 ~~~ 202 (213)
T 3r06_A 200 TST 202 (213)
T ss_dssp TCS
T ss_pred ccC
Confidence 644
No 245
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.68 E-value=9e-16 Score=175.96 Aligned_cols=200 Identities=16% Similarity=0.243 Sum_probs=132.3
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc-----------------cCCCcEEEEee--CCeEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL-----------------SAGSRIKTIND--FGFVI 975 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i-----------------~~~~~~~~~~~--~~~~~ 975 (1884)
+.+..+ ..+.+.+|++++|.|.+.+.+.+.+.|.|+|++ ..+ ....|+.+..+ ++..+
T Consensus 4 ~~v~~p-~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 82 (247)
T 2ghw_B 4 VQLVQS-GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY 82 (247)
T ss_dssp CEEEEE-CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEE
T ss_pred eEEEec-CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEE
Confidence 344444 568999999999999998422226789999942 111 12357776653 45678
Q ss_pred EEEccCCCCCCeEEEEEEEcCCee--EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCC
Q psy2148 976 LEINDVYLRDSGLYTCKATNKHGE--ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNP 1053 (1884)
Q Consensus 976 L~I~~~~~~D~G~Y~C~a~N~~G~--~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1884)
|.|.+++.+|+|.|+|.|.|..+. ....+.|.|...+... +..+ ......+
T Consensus 83 L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~--~~~~-------------------------~~~~~~~ 135 (247)
T 2ghw_B 83 LQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGS--GGGG-------------------------SGGGGSE 135 (247)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC---------------------------------------CC
T ss_pred EEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccc--cccc-------------------------cCCCCcc
Confidence 999999999999999999998443 2334577886542200 0000 0000123
Q ss_pred CceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEE--CCEecc------------CCCceEEEeeCcEEEEEEccc
Q psy2148 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFF--NGRPFA------------TGSRVKTVYDFGFISLDMDYV 1119 (1884)
Q Consensus 1054 p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k--~~~~l~------------~~~~~~~~~~~~~~~l~i~~~ 1119 (1884)
|.+..... .+.+.+|++++|.|.+. +.|.+.|.|+| +|..+. ...++....+....+|.|.++
T Consensus 136 ~~~~~~~~-~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 212 (247)
T 2ghw_B 136 TTLTQSPA-TLSLSPGERATLSCRAS--QSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRL 212 (247)
T ss_dssp CCEEEECS-EEEECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSC
T ss_pred eEEEccCC-EEEecCCCcEEEEEEeC--CCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcC
Confidence 44443332 36788999999999997 77778999999 665431 134555544556678999999
Q ss_pred CcCCcEEEEEEEEcCCeeeEE-EEEEEEe
Q psy2148 1120 YARDSGEYICRATNKWGTAMT-KAKVICK 1147 (1884)
Q Consensus 1120 ~~~d~G~Y~C~a~n~~G~~~~-~~~l~v~ 1147 (1884)
+.+|+|.|+|.|.|..+.... ...|.|.
T Consensus 213 ~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 213 EPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 999999999999996543332 3456654
No 246
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=175.85 Aligned_cols=187 Identities=19% Similarity=0.230 Sum_probs=139.1
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCC--CcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAG--SRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
.+|.| ..+.++.+.+|+.+.|.|.+. +.|.|.|.|+|+|..|..+ .++.+...+....|.|.++..+|+|.|+|.
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~--g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 94 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEVF--AYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCT 94 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEEE--EESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEEe--ecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEE
Confidence 57888 567779999999999999998 6788899999999999776 567777766778999999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 993 ATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|.|..|..+..+.|.|..+|. +|..... ...+..+
T Consensus 95 a~n~~g~~~~~~~l~v~~~P~---------------------------------------~p~~~~~------~~~~~~~ 129 (215)
T 3mtr_A 95 AVNRIGQESLEFILVQADTPS---------------------------------------SPSIDQV------EPYSSTA 129 (215)
T ss_dssp EECSSCEEEEEEEEEECCCCC---------------------------------------CCEEEEE------EEETTEE
T ss_pred EEECCCceEEEEEEEECCCCC---------------------------------------CCcceEE------EEecceE
Confidence 999999999999999976543 2222111 1235678
Q ss_pred EEEEEEee--CCCCCc--EEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEee
Q psy2148 1073 HFDCRLEP--KSDPTM--RIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKA 1148 (1884)
Q Consensus 1073 ~l~C~v~~--~~~p~~--~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~ 1148 (1884)
.|.|.... .+.|.. .+.|.+++........+..........|.|.++...|.|.|+|.|.|.+|....+..+.+..
T Consensus 130 ~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T 209 (215)
T 3mtr_A 130 QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209 (215)
T ss_dssp EEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred EEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEe
Confidence 88887432 233433 47898887653221110000011114799999999999999999999999888777777664
Q ss_pred c
Q psy2148 1149 K 1149 (1884)
Q Consensus 1149 ~ 1149 (1884)
+
T Consensus 210 ~ 210 (215)
T 3mtr_A 210 Q 210 (215)
T ss_dssp C
T ss_pred c
Confidence 3
No 247
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.67 E-value=1.6e-16 Score=178.72 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=129.0
Q ss_pred cCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--ee---c----------------CCCCCeEEEEe--CceeEEEE
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I----------------TSSPDFQIHTF--STKSILIM 1699 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~---~----------------~~~~~~~~~~~--~~~~~L~i 1699 (1884)
.+..+.+.+|+++.|.|.+.|.| .+.+.|+|++ .. + ....++.+... ....+|.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (222)
T 1q9r_B 6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM 85 (222)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence 34567889999999999999876 7899999853 21 1 01245665543 34568999
Q ss_pred cccccCCCeEEEEEEEeCCc-----eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCc-
Q psy2148 1700 RQVFMEDSGVFAVIAENRGG-----KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL- 1772 (1884)
Q Consensus 1700 ~~v~~~DsG~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p- 1772 (1884)
.+++.+|+|.|.|.+.|..| .....+.|.|...+. .+|.+...+....+..|+.++|.|.+.|. |.|
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~------~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~ 159 (222)
T 1q9r_B 86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKT------TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPV 159 (222)
T ss_dssp CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCC------BCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCC
T ss_pred CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCC------CCCeEEEccccccccCCCcEEEEEEEccEECCCC
Confidence 99999999999999998764 222345777764221 46777665544456789999999999995 888
Q ss_pred EEEEEeCCEecCCCCCeEEeecCC---eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2148 1773 DVYWLKNGKKIIPDIRYKTLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELV 1831 (1884)
Q Consensus 1773 ~v~W~k~~~~l~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 1831 (1884)
.|+|+++|..+..........++. ...|.|.++..+| |.|+|.|.|..|.......|.
T Consensus 160 ~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~ 220 (222)
T 1q9r_B 160 TVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 220 (222)
T ss_dssp EEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred EEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence 999999998764321111111221 2368999999999 999999999999866555443
No 248
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.67 E-value=6.8e-16 Score=170.09 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=120.1
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEE-EEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIK-TINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
.+|.|...+. ..+.+|++++|.|.+. + |.+.+.|+|+|..+....+.. .........|.|.+++.+|+|.|+|.|
T Consensus 7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~--~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a 82 (201)
T 1nkr_A 7 RKPSLLAHPG-PLVKSEETVILQCWSD--V-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG 82 (201)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEES--S-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCeEEEEcC-CccCCCCcEEEEEecc--C-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeE
Confidence 4677777665 7889999999999996 3 667999999998764321110 111112347999999999999999999
Q ss_pred EcCC-----eeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCC
Q psy2148 994 TNKH-----GEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPE 1068 (1884)
Q Consensus 994 ~N~~-----G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 1068 (1884)
.|.. ...+..+.|.|.+.+ .+|.+..... ..+.+
T Consensus 83 ~~~~~~~~~~~~s~~~~l~V~~~~---------------------------------------~~p~i~~~p~--~~v~~ 121 (201)
T 1nkr_A 83 SVTHSPYQVSAPSDPLDIVIIGLY---------------------------------------EKPSLSAQPG--PTVLA 121 (201)
T ss_dssp EBTTBTTCCCCCCCCEEEEEECSS---------------------------------------CCCEEEEESC--SEECT
T ss_pred ecCCCCccccCCCCCEEEEeeccC---------------------------------------CCCceecCCC--CccCC
Confidence 8753 233456678886421 2344443332 35789
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeC-cEEEEEEcccCcCCcEEEEEEEEcCC
Q psy2148 1069 AGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDF-GFISLDMDYVYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1069 g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~ 1135 (1884)
|+.++|.|.+. + +.+.|.|+|+|..+...........+ ....|.|.+++ |+|.|+|.|.+..
T Consensus 122 G~~v~L~C~~~--~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 122 GENVTLSCSSR--S-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp TCEEEEEEEES--S-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred CCeEEEEEeCC--C-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 99999999986 3 56789999999887643221111111 14579999998 9999999999764
No 249
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.67 E-value=5e-16 Score=178.21 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=122.3
Q ss_pred ecCCceeecCCCeEEEEEEEeccCCCe-----EEEEeCCeecCCC--------C-------CeEEE---EeCceeEEEEc
Q psy2148 1644 KKIQPCRAFEQDQARFEVEFDGDPLPT-----IKWFREDFPITSS--------P-------DFQIH---TFSTKSILIMR 1700 (1884)
Q Consensus 1644 ~~~~~~~v~~G~~~~l~C~~~g~p~~~-----i~W~~~~~~~~~~--------~-------~~~~~---~~~~~~~L~i~ 1700 (1884)
..+..+.+.+|+++.|.|.+.|.|.+. |.|+|++...... . +..+. ....+.+|.|.
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 87 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP 87 (248)
T ss_dssp STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence 445667889999999999999998876 9999975322100 0 00000 01123459999
Q ss_pred ccccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EEEEEe
Q psy2148 1701 QVFMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLK 1778 (1884)
Q Consensus 1701 ~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~k 1778 (1884)
+++.+|+|.|.|.+.|..|.....+.|.|.. +|.+...+. ..+..|+.+.|.|.+.| .|.| .|+|+|
T Consensus 88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~----------~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k 156 (248)
T 3pv7_A 88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA----------SPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEK 156 (248)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEB----------CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEE
T ss_pred CCCHHHCeEEEEEEEeCCccceeEEEEEEec----------CCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEE
Confidence 9999999999999999998888899999984 677776554 34556888899999999 8998 999999
Q ss_pred CCEecCCCCC-------eEEee-cCC----eEEEEEccCCCCCCEEEEEEEEeCCee--EEEEEEEEE
Q psy2148 1779 NGKKIIPDIR-------YKTLE-EDN----LFTLLIIEAVVEDSGAYECVAMNNAGE--ARCEAELVV 1832 (1884)
Q Consensus 1779 ~~~~l~~~~~-------~~~~~-~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~--~~~~~~l~V 1832 (1884)
+|+.+..... ..... ..+ ...|.|.....+|.|.|+|.|.|..+. .+.++.|.|
T Consensus 157 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 157 QTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp ECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred CCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 9975532210 01111 111 247889999999999999999999986 556677777
No 250
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.67 E-value=4.5e-17 Score=179.10 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=110.4
Q ss_pred ecCCCeEEEEEEEeccCCCeEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy2148 1651 AFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 1730 (1884)
Q Consensus 1651 v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~ 1730 (1884)
+.+|++++|.|.+ |.+.|+|+|+|..+... .....+|.|.+++.+|+|.|+|.+.+.. . ..+.|.|.
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~-s--~~~~v~v~ 81 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNK-S--KPLQVYYR 81 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSC-C--CCEEEEEE
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCC-C--eeEEEEEE
Confidence 4689999999998 88999999999876421 1345679999999999999999975532 2 12444443
Q ss_pred e------ccc---------------CCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCC-C
Q psy2148 1731 E------KRQ---------------GGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDI-R 1788 (1884)
Q Consensus 1731 ~------~~~---------------~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~-~ 1788 (1884)
. ... ...+...+|.+...+ .....+|++++|.|. |.|.|.|+|+|+|..+.... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~ 158 (204)
T 1sy6_A 82 MGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDD 158 (204)
T ss_dssp C------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTC
T ss_pred EeccccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCC
Confidence 0 000 000000123333222 222238999999999 88999999999999986542 2
Q ss_pred eEEeecCCeEEEEEccC-CCCCCEEEEEEEEeCCee-EEEEEEEEE
Q psy2148 1789 YKTLEEDNLFTLLIIEA-VVEDSGAYECVAMNNAGE-ARCEAELVV 1832 (1884)
Q Consensus 1789 ~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~N~~G~-~~~~~~l~V 1832 (1884)
..+...++ .|.|.++ ..+|+|.|+|.|.|..|. ++..+.|.|
T Consensus 159 ~~~~~~~~--~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 159 KNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp TTEEEETT--EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred ceEecCCC--EEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 22222222 8999999 999999999999999996 245555554
No 251
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.67 E-value=2.8e-16 Score=173.64 Aligned_cols=174 Identities=13% Similarity=0.151 Sum_probs=121.4
Q ss_pred ceeecCCCeEEEEEEEeeC--CCCCcEEEEeeCCEEccC------------CCcEEEEeeCCeEEEEEccCCCCCCeEEE
Q psy2148 925 DLTLAESTLAHFECRLTPT--NDPSMTVEWFHNGKALSA------------GSRIKTINDFGFVILEINDVYLRDSGLYT 990 (1884)
Q Consensus 925 ~~~v~~G~~v~l~C~v~~~--~~P~~~v~W~~~g~~i~~------------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 990 (1884)
.+.+.+|++++|.|.+.+. +.|.+.+.|+|++..+.. ..|..+.. .+...|.|.+++.+|+|.|+
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~-~~~~~L~I~~v~~~D~G~Y~ 81 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYE 81 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEcc-CCCcEEEEecccchhCeEEE
Confidence 4688999999999998631 236789999999988721 12333211 22347999999999999999
Q ss_pred EEEEcCCeeE-----EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcC
Q psy2148 991 CKATNKHGEA-----TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLD 1065 (1884)
Q Consensus 991 C~a~N~~G~~-----~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 1065 (1884)
|.|.|..|.. +..+.|.|..++ ..|.+....
T Consensus 82 C~~~~~~g~~~~~~~~~~~~l~V~~~~---------------------------------------~~p~~~~~~----- 117 (201)
T 1dr9_A 82 CVVLKYEKDAFKREHLAEVTLSVKADF---------------------------------------PTPSISDFE----- 117 (201)
T ss_dssp EEEEECCTTSCEEEEEEEEEEEEECCC---------------------------------------CCCEEEEEE-----
T ss_pred EEEEcCCCCccccccccEEEEEEcCCC---------------------------------------CCCceEecc-----
Confidence 9999987653 456677776432 123332211
Q ss_pred cCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeC-cE-EEEEEcccCcCCcEEEEEEEEcCCeeeEEEEE
Q psy2148 1066 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDF-GF-ISLDMDYVYARDSGEYICRATNKWGTAMTKAK 1143 (1884)
Q Consensus 1066 v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~-~~-~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~ 1143 (1884)
...|+.+.|.|.+. .|.|.|.|.|+|+|+.+............ +. ....+..+..+|+|.|+|.|.|..|..+..+.
T Consensus 118 ~~~g~~~~l~C~~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~ 196 (201)
T 1dr9_A 118 IPTSNIRRIICSTS-GGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN 196 (201)
T ss_dssp CSSTTEEEEEEEEE-EESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred CCCCCeEEEEEecC-CccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence 23588999999995 27889999999999998865333222222 32 22234455678999999999999998877655
Q ss_pred E
Q psy2148 1144 V 1144 (1884)
Q Consensus 1144 l 1144 (1884)
+
T Consensus 197 ~ 197 (201)
T 1dr9_A 197 W 197 (201)
T ss_dssp E
T ss_pred c
Confidence 4
No 252
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.67 E-value=7.9e-16 Score=179.22 Aligned_cols=187 Identities=19% Similarity=0.264 Sum_probs=128.6
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCE-----Ec---------cCCCcEEEEeeCCeEEEEEcc
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGK-----AL---------SAGSRIKTINDFGFVILEIND 980 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~-----~i---------~~~~~~~~~~~~~~~~L~I~~ 980 (1884)
..+.|...+.++.+.+|++++|.|.+. +.|.+.|.|+|++. .+ ....|+.+...++..+|.|.+
T Consensus 11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~--~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 88 (276)
T 3auv_A 11 GDIQMTQSPSSLSASVGDRVTITCRAS--QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISS 88 (276)
T ss_dssp -CCCEEEECSEEECCTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred cceeEEeCCCeEEEcCCCCEEEEeEcC--CCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEcc
Confidence 356778888999999999999999998 66788999999641 22 124577776667777999999
Q ss_pred CCCCCCeEEEEEEEcCCee-EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeee
Q psy2148 981 VYLRDSGLYTCKATNKHGE-ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQ 1059 (1884)
Q Consensus 981 ~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1059 (1884)
++.+|+|.|.|.|.|..+. ....+.|.|...+....... .....|+.+...
T Consensus 89 v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~----------------------------~~~~~p~~~~~~ 140 (276)
T 3auv_A 89 LQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGR----------------------------SGGGGSEVQLVE 140 (276)
T ss_dssp CCGGGCEEEEEEECSSSSCCCCCCEEEEC---------------------------------------------CCEEEE
T ss_pred CChhhCEEEEEEEecCCcccccCCEEEEEecCCCcccccc----------------------------ccccCcceEEEC
Confidence 9999999999999998654 23345777765432100000 000012233333
Q ss_pred cCCCcCcCCCCcEEEEEEEeeCCCC--CcEEEEEECC--Eec-----------------cCCCceEEEee--CcEEEEEE
Q psy2148 1060 LQDNLDVPEAGKVHFDCRLEPKSDP--TMRIDWFFNG--RPF-----------------ATGSRVKTVYD--FGFISLDM 1116 (1884)
Q Consensus 1060 ~~~~~~v~~g~~~~l~C~v~~~~~p--~~~v~W~k~~--~~l-----------------~~~~~~~~~~~--~~~~~l~i 1116 (1884)
. ....+.+|++++|.|.+. +.| .+.|.|||++ ..+ ....++.+..+ .+...|.|
T Consensus 141 p-~~~~v~~G~~v~L~C~~~--g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 217 (276)
T 3auv_A 141 S-GGGLVQPGGSLRLSCAAS--GFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQM 217 (276)
T ss_dssp E-CCEEECTTCCEEEEEEEE--SSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred C-CceEecCCCeEEEEEEec--CccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEE
Confidence 3 347788999999999997 544 5899999963 221 11245555443 34568999
Q ss_pred cccCcCCcEEEEEEEEcC
Q psy2148 1117 DYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1117 ~~~~~~d~G~Y~C~a~n~ 1134 (1884)
.+++.+|+|.|.|.|.|.
T Consensus 218 ~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 218 NSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp CSCCGGGCEEEEEEEECS
T ss_pred CCCChhHCEEEEEEEEcC
Confidence 999999999999999998
No 253
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.67 E-value=3e-16 Score=150.44 Aligned_cols=95 Identities=28% Similarity=0.419 Sum_probs=90.6
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.||.|...+.+..+.+|++++|.|.+.|.|.|.|+|+|||..|..+.++.+..++..+.|.|.++..+|+|.|+|.|.|.
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 91 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA 91 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred CeeEEEEEEEEEEec
Q psy2148 1821 AGEARCEAELVVQSK 1835 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~~ 1835 (1884)
+|..+.++.|.|.++
T Consensus 92 ~G~~~~~~~l~V~~p 106 (107)
T 3knb_B 92 AGEAYAAAAVTVLEP 106 (107)
T ss_dssp TEEEEEEEEEEEEC-
T ss_pred CCEEEEEEEEEEEcC
Confidence 999999999999873
No 254
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.67 E-value=1.8e-16 Score=182.11 Aligned_cols=179 Identities=15% Similarity=0.124 Sum_probs=132.2
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccC-----CCeEEEEeCCe--ec------------CCCCCeEEEEeCceeEEEE
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDP-----LPTIKWFREDF--PI------------TSSPDFQIHTFSTKSILIM 1699 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p-----~~~i~W~~~~~--~~------------~~~~~~~~~~~~~~~~L~i 1699 (1884)
.+.+...+..+.+.+|++++|.|.+.|.| .+.|.|+|++. .+ ....++.+...+...+|.|
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 113 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI 113 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence 34566667888999999999999999988 68999999641 11 1134666666667779999
Q ss_pred cccccCCCeEEEEEEEeCCceE-EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EEEE
Q psy2148 1700 RQVFMEDSGVFAVIAENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYW 1776 (1884)
Q Consensus 1700 ~~v~~~DsG~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W 1776 (1884)
.+++.+|+|.|.|.+.|..+.. .....|.|.... .+|.+...+....+..|+.++|.|.+.| .|.+ .|+|
T Consensus 114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 186 (252)
T 3bkj_L 114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD-------AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKW 186 (252)
T ss_dssp SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC-------BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEE
T ss_pred CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC-------cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEE
Confidence 9999999999999999876532 233567775422 4687776555444557999999999998 5554 7999
Q ss_pred EeCCEecCCCCCe--EEe-ecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeE
Q psy2148 1777 LKNGKKIIPDIRY--KTL-EEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEA 1824 (1884)
Q Consensus 1777 ~k~~~~l~~~~~~--~~~-~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~ 1824 (1884)
+|+|+.+..+... ... ..++ ...|.|.++..+|+|.|+|.|.|.....
T Consensus 187 ~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 187 KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp EETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred EECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 9999988654111 111 1111 2369999999999999999999987653
No 255
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.67 E-value=3.7e-16 Score=175.33 Aligned_cols=182 Identities=15% Similarity=0.169 Sum_probs=122.3
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEcc-----------------CCCcEEEEee--CCeEEEEEcc
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKALS-----------------AGSRIKTIND--FGFVILEIND 980 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i~-----------------~~~~~~~~~~--~~~~~L~I~~ 980 (1884)
.+..+.+.+|++++|.|.+.+.+.+.+.|.|+|+ |..+. ...|+.+..+ .+...|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 3566789999999999999843224789999997 43321 1356666543 3466899999
Q ss_pred CCCCCCeEEEEEEEcCCee----EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCce
Q psy2148 981 VYLRDSGLYTCKATNKHGE----ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVF 1056 (1884)
Q Consensus 981 ~~~~D~G~Y~C~a~N~~G~----~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1056 (1884)
++.+|+|.|+|.|.|..|. ....+.|.|...+ +.+|.+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~~P~i 127 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK--------------------------------------TTPPSV 127 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC--------------------------------------CBCCEE
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCC--------------------------------------CCCCeE
Confidence 9999999999999998742 2234677776421 023444
Q ss_pred eeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeCc---EEEEEEcccCcCCcEEEEEEEE
Q psy2148 1057 TSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDFG---FISLDMDYVYARDSGEYICRAT 1132 (1884)
Q Consensus 1057 ~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~ 1132 (1884)
..... ...+.+|+.+.|.|.+.+ +.|.| .|.|+|+|..+...........+. ...|.|.. ...|.|.|+|.|.
T Consensus 128 ~~~~~-~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~d~g~Y~C~a~ 204 (219)
T 1c1e_H 128 YPLAP-GSAAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPS-SPRPSETVTCNVA 204 (219)
T ss_dssp EEECC-CSSSCCSSEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEES-SSTTTSCCEEEEE
T ss_pred EEecC-ccccccCCeEEEEEEccc-ccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEec-ccCCCCEEEEEEE
Confidence 33222 245678999999999982 27888 999999998753110000111111 23688844 4446699999999
Q ss_pred cCCeeeEEEEEE
Q psy2148 1133 NKWGTAMTKAKV 1144 (1884)
Q Consensus 1133 n~~G~~~~~~~l 1144 (1884)
|..|.......|
T Consensus 205 n~~~~~~~~~~i 216 (219)
T 1c1e_H 205 HPASSTKVDKKI 216 (219)
T ss_dssp EGGGTEEEEEEC
T ss_pred eCCCCccEEEec
Confidence 999876655444
No 256
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.67 E-value=2.1e-16 Score=168.77 Aligned_cols=157 Identities=13% Similarity=0.199 Sum_probs=118.4
Q ss_pred CCceeecCCCeEEEEEEEe--ccCCCeEEEEe--CCeec----------CCCCCeEEEEeCceeEEEEcccccCCCeEEE
Q psy2148 1646 IQPCRAFEQDQARFEVEFD--GDPLPTIKWFR--EDFPI----------TSSPDFQIHTFSTKSILIMRQVFMEDSGVFA 1711 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~--g~p~~~i~W~~--~~~~~----------~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~ 1711 (1884)
...+.+.+|+++.|.|... +.|.+.|.|+| ++..| ....++.+. .+++|.|.+++.+|+|.|+
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~---~ngsL~I~~v~~~DsG~Y~ 82 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF---KNGTLKIKHLKTDDQDIYK 82 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC---TTSCEEECSCCGGGCEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC---CCCCEEECCCChhhCEEEE
Confidence 3456788999999999543 35678999999 88766 234454443 3458999999999999999
Q ss_pred EEEEeCCceEE--EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCe
Q psy2148 1712 VIAENRGGKAK--CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRY 1789 (1884)
Q Consensus 1712 C~a~n~~g~~~--~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~ 1789 (1884)
|.|.|..|... ..+.|.|.+.. .+|.+... +..++|.|.+.+.|.|.+.|+++|..+ ..
T Consensus 83 c~~~n~~g~~~~~~~~~L~V~~~~-------~~P~i~~~--------~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~--- 143 (182)
T 1hnf_A 83 VSIYDTKGKNVLEKIFDLKIQERV-------SKPKISWT--------CINTTLTCEVMNGTDPELNLYQDGKHL-KL--- 143 (182)
T ss_dssp EEEEETTSCEEEEEEEEEEEECCC-------CCCEEEEE--------TTTTEEEEECSSCSSCEEEEEESSCEE-EE---
T ss_pred EEEEeCCCceeEEEEEEEEEcCcC-------CCCEEEEc--------cCcEEEEeEccCCCCCEEEEEECCEEC-CC---
Confidence 99999988754 56678887532 35666542 336899999999999999999999887 11
Q ss_pred EEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2148 1790 KTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELV 1831 (1884)
Q Consensus 1790 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 1831 (1884)
... .|.+.. ..+|.|.|+|.|.|.+|..+.+..+.
T Consensus 144 ----~~~--~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 144 ----SQR--VITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS 178 (182)
T ss_dssp ----ESS--CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred ----CCc--EEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence 111 333333 47899999999999999988877664
No 257
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.67 E-value=9.7e-16 Score=176.49 Aligned_cols=192 Identities=14% Similarity=0.197 Sum_probs=132.2
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc-----------------cCCCcEEEEe--eCCe
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL-----------------SAGSRIKTIN--DFGF 973 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i-----------------~~~~~~~~~~--~~~~ 973 (1884)
.+|.+...+.++++.+|++|+|.|.+.+...|.+.|.|+|.. ..+ ....|+.+.. ..+.
T Consensus 5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 84 (256)
T 3juy_B 5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT 84 (256)
T ss_dssp --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence 467888899999999999999999998533477899999832 111 1124777663 3456
Q ss_pred EEEEEccCCCCCCeEEEEEEEcC------------CeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhccc
Q psy2148 974 VILEINDVYLRDSGLYTCKATNK------------HGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRK 1041 (1884)
Q Consensus 974 ~~L~I~~~~~~D~G~Y~C~a~N~------------~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1884)
+.|.|.+++.+|+|.|.|.|.|. .+.....+.|.|...+.... +..
T Consensus 85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~-~~~--------------------- 142 (256)
T 3juy_B 85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSG-GGG--------------------- 142 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC-----------------------------
T ss_pred EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCccccc-ccc---------------------
Confidence 78999999999999999999997 44444566788865322100 000
Q ss_pred CcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEEC--CEecc------------CCCceEEE
Q psy2148 1042 DELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFN--GRPFA------------TGSRVKTV 1106 (1884)
Q Consensus 1042 ~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~--~~~l~------------~~~~~~~~ 1106 (1884)
......+|.+..... .+.+.+|++++|.|.+. +.|. +.+.|||. +..+. ...++...
T Consensus 143 -----~~~~~~~~~~~~~~~-~~~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 214 (256)
T 3juy_B 143 -----SGGGGSEIVLTQAPG-TLSLSPGERATFSCRSS--HSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGS 214 (256)
T ss_dssp --------CCCCCCEEEECS-EEEECTTSCEEEEEEES--SCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE
T ss_pred -----cCCCcceeEEEecCC-eEEEeCCCCEEEEEEEC--CCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEE
Confidence 000002344444433 37788999999999997 5554 88999983 32221 23455555
Q ss_pred eeCcEEEEEEcccCcCCcEEEEEEEEcCCe
Q psy2148 1107 YDFGFISLDMDYVYARDSGEYICRATNKWG 1136 (1884)
Q Consensus 1107 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G 1136 (1884)
.+....+|.|.+++.+|+|.|.|.|.|..+
T Consensus 215 ~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 215 GSGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp EETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred ccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 566677899999999999999999999654
No 258
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.67 E-value=5e-16 Score=177.26 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=127.0
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCC----CcEEEEeeC--CEEc------------cCCCcEEEEeeCCeEEEEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDP----SMTVEWFHN--GKAL------------SAGSRIKTINDFGFVILEI 978 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P----~~~v~W~~~--g~~i------------~~~~~~~~~~~~~~~~L~I 978 (1884)
..|...+.++.+.+|++|+|.|.+. +.| .+.|.|+|+ |..+ ....|+.+...++.++|.|
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 79 (240)
T 1moe_A 2 IVLTQSPASLAVSLGQRATMSCRAG--ESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLII 79 (240)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEES--SCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred CceEeeCCeEEecCCCCEEEEEeCC--CccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEE
Confidence 3466778889999999999999998 566 788999995 2211 1245777766677789999
Q ss_pred ccCCCCCCeEEEEEEEcCCee-EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCcee
Q psy2148 979 NDVYLRDSGLYTCKATNKHGE-ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFT 1057 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1057 (1884)
.+++.+|+|.|+|.|.|..|. ....+.|.|...+.. ..++.+.
T Consensus 80 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~------------------------------------~~~~~~~ 123 (240)
T 1moe_A 80 DPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSG------------------------------------GGGEVQL 123 (240)
T ss_dssp SSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCC------------------------------------CCCCCEE
T ss_pred cCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCC------------------------------------CCceEEE
Confidence 999999999999999998664 344567888643210 0122233
Q ss_pred eecCCCcCcCCCCcEEEEEEEeeCCCC--CcEEEEEEC--CEecc-----------------CCCceEEEee--CcEEEE
Q psy2148 1058 SQLQDNLDVPEAGKVHFDCRLEPKSDP--TMRIDWFFN--GRPFA-----------------TGSRVKTVYD--FGFISL 1114 (1884)
Q Consensus 1058 ~~~~~~~~v~~g~~~~l~C~v~~~~~p--~~~v~W~k~--~~~l~-----------------~~~~~~~~~~--~~~~~l 1114 (1884)
.... ...+.+|++++|.|.+. +.| .+.|.|+|+ |..+. ...++.+..+ .....|
T Consensus 124 ~~~~-~~~v~~G~~v~L~C~~~--g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 200 (240)
T 1moe_A 124 QQSG-AELVEPGASVKLSCTAS--GFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYL 200 (240)
T ss_dssp EECC-CEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred eCCC-ceEEeCCCcEEEEEEEc--CccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEE
Confidence 3322 36788999999999998 554 468999996 32221 1234444433 445789
Q ss_pred EEcccCcCCcEEEEEEEEcC
Q psy2148 1115 DMDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1115 ~i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
.|.+++.+|+|.|+|.|.+.
T Consensus 201 ~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 201 QLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp EECSCCGGGCEEEEEEECST
T ss_pred EECcCCHHHCEEEEEEEEec
Confidence 99999999999999999853
No 259
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.67 E-value=1.5e-16 Score=177.20 Aligned_cols=175 Identities=11% Similarity=0.132 Sum_probs=125.2
Q ss_pred cCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--eecC----------------CCCCeEEEEeC--ceeEEEEccc
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPIT----------------SSPDFQIHTFS--TKSILIMRQV 1702 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~~~----------------~~~~~~~~~~~--~~~~L~i~~v 1702 (1884)
.+..+.+.+|+++.|.|.+.|.| .+.+.|+|++ ..+. ...++.+.... +..+|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 85 (210)
T 3d9a_H 6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV 85 (210)
T ss_dssp EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence 35667899999999999999876 4899999863 2110 13466665432 3468999999
Q ss_pred ccCCCeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCc-EEEEEeCC
Q psy2148 1703 FMEDSGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKNG 1780 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~k~~ 1780 (1884)
+.+|+|.|.|.+.|.. .......|.|..... .+|.+...+....+..|+.++|.|.+.|. |.| .|+|++++
T Consensus 86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~------~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 158 (210)
T 3d9a_H 86 TTEDTATYYCANWDGD-YWGQGTLVTVSAAKT------TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 158 (210)
T ss_dssp CGGGCEEEEEEETTSS-CBCCCEEEEECCCCC------BCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CcccCEEEEEEEecCc-ccccceEEEeccCCC------CCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCC
Confidence 9999999999998863 222335677764221 46777765544557889999999999996 888 99999999
Q ss_pred EecCCCCCeEEeecC---CeEEEEEccCCCCCCEEEEEEEEeCCeeEEEE
Q psy2148 1781 KKIIPDIRYKTLEED---NLFTLLIIEAVVEDSGAYECVAMNNAGEARCE 1827 (1884)
Q Consensus 1781 ~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~ 1827 (1884)
..+.......+...+ ....|.|.++..+| |.|+|.|.|..|.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 159 LSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp BCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred cccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence 865321111111222 12369999998877 99999999999986544
No 260
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.67 E-value=4.8e-16 Score=173.90 Aligned_cols=174 Identities=16% Similarity=0.203 Sum_probs=123.9
Q ss_pred eecCCceeecCCCeEEEEEEEecc-------CCCeEEEEeCCee------c-----------CCCCCeEEEEe--CceeE
Q psy2148 1643 TKKIQPCRAFEQDQARFEVEFDGD-------PLPTIKWFREDFP------I-----------TSSPDFQIHTF--STKSI 1696 (1884)
Q Consensus 1643 ~~~~~~~~v~~G~~~~l~C~~~g~-------p~~~i~W~~~~~~------~-----------~~~~~~~~~~~--~~~~~ 1696 (1884)
+..+..+.+.+|+++.|.|.+.+. +.+.+.|+|++.. + ....++.+... ..+.+
T Consensus 4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s 83 (214)
T 2zg1_A 4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS 83 (214)
T ss_dssp EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence 445677889999999999999864 5789999998752 1 01123433221 23457
Q ss_pred EEEcccccCCCeEEEEEEEeCCceEE----EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC---
Q psy2148 1697 LIMRQVFMEDSGVFAVIAENRGGKAK----CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT--- 1769 (1884)
Q Consensus 1697 L~i~~v~~~DsG~Y~C~a~n~~g~~~----~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~--- 1769 (1884)
|.|.+++.+|+|.|.|.+.+..+... ..+.|.|...+ .+|.+.. +. .+.+|+.++|.|.+.|.
T Consensus 84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-------~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~ 153 (214)
T 2zg1_A 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI-------EKPDIHF-LE--PLESGRPTRLSCSLPGSCEA 153 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC-------CCCEEC---C--CCCTTCCEEEEEECTTCCSC
T ss_pred EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC-------CCCceec-Cc--cccCCCeEEEEEEeccCCCC
Confidence 99999999999999999999864432 36788888643 2566643 22 26789999999999874
Q ss_pred -CCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCee--EEEEEEEEE
Q psy2148 1770 -KPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGE--ARCEAELVV 1832 (1884)
Q Consensus 1770 -p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~--~~~~~~l~V 1832 (1884)
|.|.|+|+|++..+... +. .....|.|..+..+|.|.|+|.|.|..|. .+.++.|.|
T Consensus 154 ~p~p~v~W~~~~~~~~~~-~~-----~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 154 GPPLTFSWTGNALSPLDP-ET-----TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp SSCCEEEEESSTTSSSCS-SC-----CCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred CCCceEEEeCCCCccCCC-Cc-----eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 88999999998764322 11 12238999999999999999999998755 445555544
No 261
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.66 E-value=9.3e-16 Score=175.76 Aligned_cols=180 Identities=16% Similarity=0.165 Sum_probs=128.1
Q ss_pred eeeecCCceeecCCCeEEEEEEEeccC-----CCeEEEEeCC--ee---c---------CCCCCeEEEEeCceeEEEEcc
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVEFDGDP-----LPTIKWFRED--FP---I---------TSSPDFQIHTFSTKSILIMRQ 1701 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~~~g~p-----~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~L~i~~ 1701 (1884)
.+...+..+.+.+|++++|.|.+.+.| .+.+.|+|++ .. + ....++.+.......+|.|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 82 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR 82 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence 355667788999999999999999988 6899999853 21 1 013567766666677999999
Q ss_pred cccCCCeEEEEEEEeCCce-EEEEEEEEEEecccC---CCCCCCCCeEEeccCceEEcCCceEEEEEEEecCC--CcEEE
Q psy2148 1702 VFMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQG---GRGGVVPPSFLTTISSAVINVGQLARFDAKISATK--PLDVY 1775 (1884)
Q Consensus 1702 v~~~DsG~Y~C~a~n~~g~-~~~~~~l~V~~~~~~---~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~ 1775 (1884)
++.+|+|.|.|.+.|..+. ....+.|.|...+.. ..+...++.+...+....+.+|++++|.|.+.+.| .+.|.
T Consensus 83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~ 162 (247)
T 1svz_A 83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMH 162 (247)
T ss_dssp CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred CCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEE
Confidence 9999999999999998654 223467787653210 00000133344444556699999999999999975 56899
Q ss_pred EEeCC--Eec------C-----------CCCCeEEee--cCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1776 WLKNG--KKI------I-----------PDIRYKTLE--EDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1776 W~k~~--~~l------~-----------~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
|+|++ ..+ . ...|+.+.. ......|+|.+++.+|+|.|+|.|.|.
T Consensus 163 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 163 WVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 99963 211 0 135666654 345679999999999999999999996
No 262
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=173.25 Aligned_cols=186 Identities=20% Similarity=0.215 Sum_probs=141.2
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCC--CCeEEEEeCceeEEEEcccccCCCeEEEEEE
Q psy2148 1637 AKPPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS--PDFQIHTFSTKSILIMRQVFMEDSGVFAVIA 1714 (1884)
Q Consensus 1637 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a 1714 (1884)
..+|.| ..+..+.+.+|+.+.|.|.+.|.|.|.|.|+|+|..+... .++.+......+.|.|.++..+|+|.|.|.|
T Consensus 17 ~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 95 (215)
T 3mtr_A 17 MYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95 (215)
T ss_dssp CEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred ecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence 346777 4666789999999999999999999999999999998766 4567766677889999999999999999999
Q ss_pred EeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEe----cCCCc--EEEEEeCCEecCCCCC
Q psy2148 1715 ENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS----ATKPL--DVYWLKNGKKIIPDIR 1788 (1884)
Q Consensus 1715 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~----g~p~p--~v~W~k~~~~l~~~~~ 1788 (1884)
.|..|.....+.|.|...+. +|..... ...+..+.|.|... |.|.+ .|.|.+++........
T Consensus 96 ~n~~g~~~~~~~l~v~~~P~-------~p~~~~~-----~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~ 163 (215)
T 3mtr_A 96 VNRIGQESLEFILVQADTPS-------SPSIDQV-----EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKW 163 (215)
T ss_dssp ECSSCEEEEEEEEEECCCCC-------CCEEEEE-----EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEE
T ss_pred EECCCceEEEEEEEECCCCC-------CCcceEE-----EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccc
Confidence 99999999999999986542 4543321 23467789998742 33433 4889988754211111
Q ss_pred eEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEec
Q psy2148 1789 YKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1789 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 1835 (1884)
+.+........|.|.++...|.|.|+|.|.|.+|....+..+.|...
T Consensus 164 ~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~ 210 (215)
T 3mtr_A 164 YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210 (215)
T ss_dssp EEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred cccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEec
Confidence 11111111138999999999999999999999999888877777653
No 263
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.66 E-value=1.6e-16 Score=168.59 Aligned_cols=156 Identities=12% Similarity=0.111 Sum_probs=116.6
Q ss_pred CceeecCCCeEEEEEEEeccCCCeEEEEeCCeecCCC----------CCeEEEEeCceeEEEEcccccCCCeEEEEEEEe
Q psy2148 1647 QPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSS----------PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716 (1884)
Q Consensus 1647 ~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~~~~~~----------~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n 1716 (1884)
+.+.+.+|++|+|.|.+.+ |.+.|.|+|++..+... .+.++.....+++|.|.+++.+|+|.|.|.+.|
T Consensus 3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n 81 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81 (171)
T ss_dssp EEEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred cEEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence 3467889999999999854 89999999998643210 001222233557899999999999999999999
Q ss_pred CCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCC
Q psy2148 1717 RGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDN 1796 (1884)
Q Consensus 1717 ~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~ 1796 (1884)
..| ...+.|.|.+++ ..|.+...... ..|.|.+.|.|.|.++|+|+|..+....+.
T Consensus 82 ~~~--~~~~~L~V~~~~-------~~p~i~~~~~~--------~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~------- 137 (171)
T 1ccz_A 82 ITD--TMKFFLYVLEMV-------SKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRSLRQK------- 137 (171)
T ss_dssp CCS--CEEEEEEEECCC-------CCCEEEEETTT--------TEEEEECSSCSSCEEEEEETTEEEEEESSS-------
T ss_pred CCC--cEEEEEEEECcC-------CCCEEEEecCC--------cEEEEEeCCCCCcEEEEEECCEECcCCcce-------
Confidence 888 677888888643 34666543321 279999999999999999999987533221
Q ss_pred eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2148 1797 LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELV 1831 (1884)
Q Consensus 1797 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 1831 (1884)
.|.+. ..+|.|.|+|.|.|.+|..+.++.|.
T Consensus 138 --~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 138 --TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp --EEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred --EEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence 34444 36789999999999999988776654
No 264
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.6e-15 Score=173.09 Aligned_cols=175 Identities=12% Similarity=0.158 Sum_probs=125.1
Q ss_pred CCceeecCCCeEEEEEEEecc--CCCeEEEEeCC--eec------------CCCCCeEEEEeCceeEEEEcccccCCCeE
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSGV 1709 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~--p~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~DsG~ 1709 (1884)
+..+.+.+|++++|.|.+.+. |.+.+.|+|++ ..+ ....++.+...+...+|.|.+++.+|+|.
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~ 88 (256)
T 3ux9_B 9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD 88 (256)
T ss_dssp CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence 445789999999999999987 78999999853 111 12346777666677799999999999999
Q ss_pred EEEEEEeCCce---EEEEEEEEEEecccCCC-----------CCCCCCeEEeccCceEEcCCceEEEEEEEecCC--CcE
Q psy2148 1710 FAVIAENRGGK---AKCSANLVVEEKRQGGR-----------GGVVPPSFLTTISSAVINVGQLARFDAKISATK--PLD 1773 (1884)
Q Consensus 1710 Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~-----------~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~ 1773 (1884)
|.|.+.|..+. ....+.|.|...+.... ....++.+. .+....+.+|++++|.|.+.+.| .+.
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 167 (256)
T 3ux9_B 89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLV-ESGGGLVQPGGSLRLSCAASGFTFSSYA 167 (256)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEC----------------------CCEEE-EECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEE-cCCCeEEcCCCeEEEEEEEeCCcccccE
Confidence 99999997652 33446788875331100 000012333 34556689999999999999977 789
Q ss_pred EEEEeC--CEec------C-----------CCCCeEEeec--CCeEEEEEccCCCCCCEEEEEEEEeCC
Q psy2148 1774 VYWLKN--GKKI------I-----------PDIRYKTLEE--DNLFTLLIIEAVVEDSGAYECVAMNNA 1821 (1884)
Q Consensus 1774 v~W~k~--~~~l------~-----------~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~ 1821 (1884)
+.|+|+ +..+ . ...|+.+..+ ...++|+|.+++.+|+|.|+|.|.|..
T Consensus 168 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 168 MSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp EEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 999997 3222 1 1236666543 456789999999999999999999964
No 265
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.66 E-value=6.8e-16 Score=175.92 Aligned_cols=183 Identities=16% Similarity=0.214 Sum_probs=131.9
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--E------------EccCCCcEEEEeeCCeEEEEEccC
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--K------------ALSAGSRIKTINDFGFVILEINDV 981 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~------------~i~~~~~~~~~~~~~~~~L~I~~~ 981 (1884)
.+.+...+.++.+.+|++++|.|.+. +.|.+.|.|+|++ . ......|+.+...++...|.|.++
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 101 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRAS--QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSL 101 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecC--CCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCC
Confidence 46677778889999999999999998 5578899999932 1 112346777776667789999999
Q ss_pred CCCCCeEEEEEEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeec
Q psy2148 982 YLRDSGLYTCKATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQL 1060 (1884)
Q Consensus 982 ~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 1060 (1884)
+.+|+|.|+|.|.|..|.. ...+.|.|...+ .+|.+....
T Consensus 102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------------------~~p~v~~~~ 142 (237)
T 3sob_L 102 QPEDFATYYCQQSYTTPPTFGQGTKVEIKRTV---------------------------------------AAPSVFIFP 142 (237)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEECCC---------------------------------------BCCEEEEEC
T ss_pred ChhhCeEEEEeeccCCceEEcCcEEEEEecCC---------------------------------------CCCceEEeC
Confidence 9999999999999987632 334567775321 345444333
Q ss_pred CCCcCcCCCCcEEEEEEEeeCCCC-CcEEEEEECCEeccCCC-ceE-EE-eeCc----EEEEEEcccCcCCcEEEEEEEE
Q psy2148 1061 QDNLDVPEAGKVHFDCRLEPKSDP-TMRIDWFFNGRPFATGS-RVK-TV-YDFG----FISLDMDYVYARDSGEYICRAT 1132 (1884)
Q Consensus 1061 ~~~~~v~~g~~~~l~C~v~~~~~p-~~~v~W~k~~~~l~~~~-~~~-~~-~~~~----~~~l~i~~~~~~d~G~Y~C~a~ 1132 (1884)
.. ..+.+|+.++|.|.+.+ +.| .+.|.|+|+|..+..+. ... .. ..++ ...|.|.....+|+|.|+|.|.
T Consensus 143 ~~-~~~~~g~~v~l~C~~~~-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~ 220 (237)
T 3sob_L 143 PS-DEQLKSGTASVVCLLNN-FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVT 220 (237)
T ss_dssp CC-HHHHHHTEEEEEEEEEE-EBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEE
T ss_pred CC-hhhccCCceEEEEEEcc-cCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEe
Confidence 22 33346889999999984 245 68999999999987542 100 00 1112 3468899999999999999999
Q ss_pred cCCeeeEEE
Q psy2148 1133 NKWGTAMTK 1141 (1884)
Q Consensus 1133 n~~G~~~~~ 1141 (1884)
|........
T Consensus 221 n~~~~~~~~ 229 (237)
T 3sob_L 221 HQGLSSPVT 229 (237)
T ss_dssp CTTCSSCEE
T ss_pred eCCCCCcee
Confidence 997654433
No 266
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.66 E-value=5.2e-16 Score=165.67 Aligned_cols=159 Identities=14% Similarity=0.231 Sum_probs=117.9
Q ss_pred CceeecCCCeEEEEEEEeeCCCCCcEEEEee--CCEEc----------cCCCcEEEEeeCCeEEEEEccCCCCCCeEEEE
Q psy2148 924 TDLTLAESTLAHFECRLTPTNDPSMTVEWFH--NGKAL----------SAGSRIKTINDFGFVILEINDVYLRDSGLYTC 991 (1884)
Q Consensus 924 ~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~--~g~~i----------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 991 (1884)
..+.+.+|++|+|.|...+.+.|.+.|.|+| ++..| ..+.|+.+..++ .|.|.+++.+|+|.|+|
T Consensus 7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~Y~c 83 (182)
T 1hnf_A 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKV 83 (182)
T ss_dssp EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEEE
T ss_pred cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEEEEE
Confidence 3467789999999995432235677999999 99887 356777776444 69999999999999999
Q ss_pred EEEcCCeeEE--EEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCC
Q psy2148 992 KATNKHGEAT--TSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEA 1069 (1884)
Q Consensus 992 ~a~N~~G~~~--~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 1069 (1884)
.|.|..|... ..+.|.|..+. ..|.+.. .+
T Consensus 84 ~~~n~~g~~~~~~~~~L~V~~~~---------------------------------------~~P~i~~---------~~ 115 (182)
T 1hnf_A 84 SIYDTKGKNVLEKIFDLKIQERV---------------------------------------SKPKISW---------TC 115 (182)
T ss_dssp EEEETTSCEEEEEEEEEEEECCC---------------------------------------CCCEEEE---------ET
T ss_pred EEEeCCCceeEEEEEEEEEcCcC---------------------------------------CCCEEEE---------cc
Confidence 9999988764 45677776421 2344432 12
Q ss_pred CcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEE
Q psy2148 1070 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1070 ~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v 1146 (1884)
..+.|.|.+. +.|.+.|.|+++|+.+ .+ ... .|.+.. ..+|+|.|+|.|.|..|..++...+..
T Consensus 116 ~~v~L~C~~~--~~p~~~~~W~~~g~~l-~~-------~~~--~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~c 179 (182)
T 1hnf_A 116 INTTLTCEVM--NGTDPELNLYQDGKHL-KL-------SQR--VITHKW-TTSLSAKFKCTAGNKVSKESSVEPVSC 179 (182)
T ss_dssp TTTEEEEECS--SCSSCEEEEEESSCEE-EE-------ESS--CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred CcEEEEeEcc--CCCCCEEEEEECCEEC-CC-------CCc--EEEEec-ccCCCcEEEEEEEeCCCCcEEcceecC
Confidence 3689999997 6778999999999988 21 111 233322 478999999999999999988876643
No 267
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.65 E-value=1.3e-16 Score=179.62 Aligned_cols=184 Identities=18% Similarity=0.247 Sum_probs=126.4
Q ss_pred CceeecCCCeEEEEEEEeeCCCCC-----cEEEEeeCCEEc-------------cCCCcEEEEee---CCeEEEEEccCC
Q psy2148 924 TDLTLAESTLAHFECRLTPTNDPS-----MTVEWFHNGKAL-------------SAGSRIKTIND---FGFVILEINDVY 982 (1884)
Q Consensus 924 ~~~~v~~G~~v~l~C~v~~~~~P~-----~~v~W~~~g~~i-------------~~~~~~~~~~~---~~~~~L~I~~~~ 982 (1884)
+.+.+.+|++++|.|.+. +.|. +.|.|++++... ....|+.+..+ .+...|.|.+++
T Consensus 3 ~~v~~~~G~~v~L~C~~~--~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~ 80 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFS--PEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVR 80 (222)
T ss_dssp CCCCCCTTSCEEECCBCC--CCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCC
T ss_pred CCEEEECCCCeEEEEEec--CCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcc
Confidence 346788999999999998 4433 789999987443 12334443321 124479999999
Q ss_pred CCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCC
Q psy2148 983 LRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQD 1062 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1062 (1884)
.+|+|.|+|.|.|. +..+..+.|.|..++ .+|.+....
T Consensus 81 ~~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~---------------------------------------~~p~i~~~~-- 118 (222)
T 4i0k_A 81 VTDEGSYTCFVSIQ-DFDSAAVSLQVAAPY---------------------------------------SKPSMTLEP-- 118 (222)
T ss_dssp GGGCSCEEEEEEEC-CCCCCCCCCCCCBCC---------------------------------------CCCEEECCC--
T ss_pred cccCEEEEEEEEeC-CCceEEEEEEEEcCC---------------------------------------CCCcEEeCC--
Confidence 99999999999986 444555556655321 223333222
Q ss_pred CcCcCCCCcEEEEEEEeeCCCCCcEEEEEE-CCEeccCCCceEEEe--eCcEEEEEEcccCcCCcEEEEEEEEcCCeeeE
Q psy2148 1063 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFF-NGRPFATGSRVKTVY--DFGFISLDMDYVYARDSGEYICRATNKWGTAM 1139 (1884)
Q Consensus 1063 ~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k-~~~~l~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~ 1139 (1884)
...+.+|+.+.|.|.+.. +.|.+.|.|++ ++..+.......... ++....|.|.++..+|+|.|+|.|.|..|...
T Consensus 119 ~~~v~~G~~~~l~C~~~~-g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 197 (222)
T 4i0k_A 119 NKDLRPGNMVTITCSSYQ-GYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQD 197 (222)
T ss_dssp -----CCSEEEEEEEEEE-EBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEE
T ss_pred CceecCCceEEEEEeccc-ccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCc
Confidence 245678999999999942 78889999999 566665433322222 22345688999999999999999999999999
Q ss_pred EEEEEEEeecccc
Q psy2148 1140 TKAKVICKAKHDI 1152 (1884)
Q Consensus 1140 ~~~~l~v~~~~~~ 1152 (1884)
.++.|.|..+|..
T Consensus 198 ~~~~l~V~~~p~~ 210 (222)
T 4i0k_A 198 AHGSVTITGQPLT 210 (222)
T ss_dssp EEEEEECCC----
T ss_pred eEEEEEEeCCccc
Confidence 9999999877654
No 268
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.65 E-value=7.7e-17 Score=183.25 Aligned_cols=177 Identities=11% Similarity=0.102 Sum_probs=128.4
Q ss_pred CCceeecCCCeEEEEEEEeccCC-C-eEEEEeCC--eec------------CCCCCeEEEEeCceeEEEEcccccCCCeE
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDPL-P-TIKWFRED--FPI------------TSSPDFQIHTFSTKSILIMRQVFMEDSGV 1709 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p~-~-~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~v~~~DsG~ 1709 (1884)
+..+.+.+|++++|.|.+.|.+. + .+.|+|++ ..+ ....++.+.......+|.|.+++.+|+|.
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 105 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD 105 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence 66778999999999999998653 4 79999863 221 11346666666667799999999999999
Q ss_pred EEEEEEeCCce---EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CC-cEEEEEeCCEecC
Q psy2148 1710 FAVIAENRGGK---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LDVYWLKNGKKII 1784 (1884)
Q Consensus 1710 Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~k~~~~l~ 1784 (1884)
|.|.|.|..+. ....+.|.|...+. .+|.+...+.......|+.++|.|.+.|. |+ +.|+|+|||+.+.
T Consensus 106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~------~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~ 179 (234)
T 2j6e_L 106 YYCATWDDSLSAVIFGGGTKLTVLGQPK------AAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVK 179 (234)
T ss_dssp EEEEEEETTTTEEEECCCBCCCBCCCCC------CCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECC
T ss_pred EEEEEEcCCcceeEecCCEEEEEecCCC------CCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECC
Confidence 99999999872 23345666743221 46666654444444568999999999985 44 4899999999986
Q ss_pred CCCCeE-Ee--ecC---CeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEE
Q psy2148 1785 PDIRYK-TL--EED---NLFTLLIIEAVVEDSGAYECVAMNNAGEARCEA 1828 (1884)
Q Consensus 1785 ~~~~~~-~~--~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~ 1828 (1884)
.+.... .. .++ ....|.|.++..+|.|.|+|.|.|..+...+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 229 (234)
T 2j6e_L 180 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 229 (234)
T ss_dssp SSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred CCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence 542110 01 111 234799999999999999999999988755544
No 269
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.65 E-value=7.2e-16 Score=173.88 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=129.1
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.+|.|...+.. .+.+|++|+|.|.+. + +.+.+.|+|+|..+...... .........|.|.+++.+|+|.|+|.+.
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~--~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 80 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGN--Y-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYR 80 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECC--T-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeC--C-CCcEEEEEECCCcccccccc-ccCCcceeEEEecCCCcccCeEEEEEEe
Confidence 56888877776 899999999999986 3 45689999999876421000 0011234479999999999999999999
Q ss_pred cCCee--EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 995 NKHGE--ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 995 N~~G~--~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|..|. .+..+.|.|.+.. .+|.+.... ...+.+|+++
T Consensus 81 ~~~~~s~~S~~~~L~V~~~~---------------------------------------~~P~i~~~p--~~~v~~G~~v 119 (242)
T 1p6f_A 81 VGELWSEPSNLLDLVVTEMY---------------------------------------DTPTLSVHP--GPEVISGEKV 119 (242)
T ss_dssp ETTEECCCCCCEEEEEECCS---------------------------------------CCCEEEEES--CSEEETTCEE
T ss_pred cCCccccCCcceEEEeeccc---------------------------------------CCCceEccC--CCccCCCCcE
Confidence 87653 2455677776421 134443322 2457899999
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCC-e--eeEEEEEEEEeec
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKW-G--TAMTKAKVICKAK 1149 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-G--~~~~~~~l~v~~~ 1149 (1884)
+|.|.+. + +.+.|.|+|+|..+.. ..........|.|.+++.+|+|.|+|.|.|.. . ..+..+.|.|.+.
T Consensus 120 tL~C~~~--~-~~~~~~w~k~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 120 TFYCRLD--T-ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp EEEEECT--T-SCSEEEEEECSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred EEEEecC--C-CCCEEEEEECCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 9999985 3 3468999999987653 11223445689999999999999999999874 1 2344577777754
Q ss_pred c
Q psy2148 1150 H 1150 (1884)
Q Consensus 1150 ~ 1150 (1884)
.
T Consensus 193 ~ 193 (242)
T 1p6f_A 193 I 193 (242)
T ss_dssp -
T ss_pred C
Confidence 3
No 270
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.65 E-value=4.2e-16 Score=176.13 Aligned_cols=177 Identities=11% Similarity=0.118 Sum_probs=124.9
Q ss_pred CCceeecCCCeEEEEEEEeccCCCe---EEEEeCCeecCC----------------CCCeEE-------EEeCceeEEEE
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDPLPT---IKWFREDFPITS----------------SPDFQI-------HTFSTKSILIM 1699 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p~~~---i~W~~~~~~~~~----------------~~~~~~-------~~~~~~~~L~i 1699 (1884)
+..+.+..|++++|.|.+.+.|.+. |+|+|++..+.. ..+... .....+.+|.|
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 87 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence 3456788999999999999988764 899998743210 011111 11123467999
Q ss_pred cccccCCCeEEEEEEEeCCceEEEE-EEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEe-cCCCcEEEEE
Q psy2148 1700 RQVFMEDSGVFAVIAENRGGKAKCS-ANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKIS-ATKPLDVYWL 1777 (1884)
Q Consensus 1700 ~~v~~~DsG~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~ 1777 (1884)
.+++.+|+|.|.|.|.|..|..... ..+.+. .+|.+...+.......++.+.+.|.+. +.|++.+.|+
T Consensus 88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~ 157 (225)
T 4fmk_A 88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVI----------AQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWI 157 (225)
T ss_dssp CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE----------BCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEE
T ss_pred ccCCHHHCcceEEEEEeCCCcceeeeeeeeee----------cCCceeecccceeecceeeeeeeeeecCCCCCCEEEEE
Confidence 9999999999999999987765544 444454 466666666666777788888888764 5788999999
Q ss_pred eCCEecCCCCCeEEeecCC---eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2148 1778 KNGKKIIPDIRYKTLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1778 k~~~~l~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
+++..+..........++. ...|.|.++..+|+|.|+|.|+|.+|....++.++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l 215 (225)
T 4fmk_A 158 SSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL 215 (225)
T ss_dssp CSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred ECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence 9987654332222222222 236999999999999999999999987655544443
No 271
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.65 E-value=1.1e-15 Score=175.54 Aligned_cols=203 Identities=16% Similarity=0.207 Sum_probs=133.7
Q ss_pred eeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEc-----------------cCCCcEEEEee--CCeEEEE
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKAL-----------------SAGSRIKTIND--FGFVILE 977 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i-----------------~~~~~~~~~~~--~~~~~L~ 977 (1884)
++..+.++++.+|++|+|.|.+.+...+.+.|.|+|. +..+ ....|+.+..+ .+.++|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 4566778899999999999999843344779999992 2111 11346666543 3467899
Q ss_pred EccCCCCCCeEEEEEEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCce
Q psy2148 978 INDVYLRDSGLYTCKATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVF 1056 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1056 (1884)
|.+++.+|+|.|+|.|.|..+.. ...+.|.|...+.....+.. .....+|.+
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~---------------------------~~~~~~~~v 136 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGS---------------------------GGGGSELVM 136 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC------------------------------------CCE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCcccccccc---------------------------CCCcccceE
Confidence 99999999999999999976654 34567777642110000000 000023344
Q ss_pred eeecCCCcCcCCCCcEEEEEEEeeCCCCCc----EEEEEEC--CEecc------------CCCceEEEeeCcEEEEEEcc
Q psy2148 1057 TSQLQDNLDVPEAGKVHFDCRLEPKSDPTM----RIDWFFN--GRPFA------------TGSRVKTVYDFGFISLDMDY 1118 (1884)
Q Consensus 1057 ~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~----~v~W~k~--~~~l~------------~~~~~~~~~~~~~~~l~i~~ 1118 (1884)
..... .+.+.+|++++|.|.+. +.|.+ .+.|||+ +..+. ...++.........+|.|.+
T Consensus 137 ~~~p~-~~~v~~G~~v~L~C~~~--~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 213 (253)
T 3uzq_A 137 TQTPA-SLAVSLGQRATISCRAS--ENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINP 213 (253)
T ss_dssp EEECS-EEEECTTSCEEEEEEES--SCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred ECcCC-eEEEeCCCCEEEEEEec--CccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECC
Confidence 33333 36788999999999997 66665 8999995 32221 12455555556677899999
Q ss_pred cCcCCcEEEEEEEEcCCeeeEE-EEEEEEeeccc
Q psy2148 1119 VYARDSGEYICRATNKWGTAMT-KAKVICKAKHD 1151 (1884)
Q Consensus 1119 ~~~~d~G~Y~C~a~n~~G~~~~-~~~l~v~~~~~ 1151 (1884)
++.+|+|.|.|.|.|..+.... -..|.|...+.
T Consensus 214 v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~ 247 (253)
T 3uzq_A 214 VEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLE 247 (253)
T ss_dssp CCGGGCEEEEEEECSSSSCCBCCCEEEEECCC--
T ss_pred CCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCC
Confidence 9999999999999997654433 35677765443
No 272
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.65 E-value=7.1e-16 Score=173.43 Aligned_cols=186 Identities=9% Similarity=0.061 Sum_probs=126.7
Q ss_pred ecCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--ee---c---C-----------CCCCeEEEEe--CceeEEEEc
Q psy2148 1644 KKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I---T-----------SSPDFQIHTF--STKSILIMR 1700 (1884)
Q Consensus 1644 ~~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~---~---~-----------~~~~~~~~~~--~~~~~L~i~ 1700 (1884)
..+....+.+|++++|.|.+.|.| .+.+.|+|++ .. + . ...++.+... .+..+|.|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (227)
T 1mju_H 5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS 84 (227)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence 345677899999999999999887 6899999864 21 1 0 1246665543 356789999
Q ss_pred ccccCCCeEEEEEEEeCCce-EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCc-EEEEE
Q psy2148 1701 QVFMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWL 1777 (1884)
Q Consensus 1701 ~v~~~DsG~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~ 1777 (1884)
+++.+|+|.|.|.+.|..+. ....+.|.|...+. .+|.+........+..|+.++|.|.+.|. |.| .|.|+
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~------~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 158 (227)
T 1mju_H 85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKT------TAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWN 158 (227)
T ss_dssp SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCC------BCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEG
T ss_pred CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCC------CCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEe
Confidence 99999999999999986432 22345788874211 35666654434456789999999999985 777 99999
Q ss_pred eCCEecCCCCCeEEeecC---CeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecC
Q psy2148 1778 KNGKKIIPDIRYKTLEED---NLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1778 k~~~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
|++..+.......+...+ ....|.|..+..+| |.|+|.|.|..+.......+.+.++|
T Consensus 159 ~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p 219 (227)
T 1mju_H 159 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT 219 (227)
T ss_dssp GGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-
T ss_pred cCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCC
Confidence 999875311000011111 12379999998888 99999999998887777777665543
No 273
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.65 E-value=3.7e-16 Score=178.58 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=54.7
Q ss_pred eecCCCeEEEEEEEeeCCCCCc--EEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCee-----
Q psy2148 927 TLAESTLAHFECRLTPTNDPSM--TVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGE----- 999 (1884)
Q Consensus 927 ~v~~G~~v~l~C~v~~~~~P~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~----- 999 (1884)
.+.+|+.++|.|.+.+ +.|.. +|+|||++++|..... .......+|.+.....+|.+.|+|+|.|.++.
T Consensus 97 ~~~~G~~~~LtC~v~g-~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l 172 (291)
T 1mq8_A 97 WQPVGKNLTLRCQVEG-GAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172 (291)
T ss_dssp BCCSSCCCEEEEEECC-CBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCE
T ss_pred cccCCCCEEEEEEecC-ccCCCCcEEEEEECCEEeecccC---CCCCceEEEEeeeeeccCCceEEEEEEecCCccCCcc
Confidence 4778999999999995 45554 6999999988854321 11122346777777777778999999998662
Q ss_pred ---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEE
Q psy2148 1000 ---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDC 1076 (1884)
Q Consensus 1000 ---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C 1076 (1884)
.+....|.|..+|.. .+.+.. ...+.+|+.+.|.|
T Consensus 173 ~~~~s~~~~L~V~~~P~~--------------------------------------~~~~~~----p~~l~eG~~v~l~C 210 (291)
T 1mq8_A 173 FENTSAPYQLQTFVLPAT--------------------------------------PPQLVS----PRVLEVDTQGTVVC 210 (291)
T ss_dssp EEECCCCEECBC--------------------------------------------------------------------
T ss_pred ccccccceEEEEEecCCC--------------------------------------CceecC----CcCccCCCeEEEEE
Confidence 233456666533210 011111 12467899999999
Q ss_pred EEeeCCCCCc---EEEEEECCEeccCCCceEEEeeCcEEEEEEc-ccCc--CCcEEEEEEEEcCCeeeEEEEEEEEeecc
Q psy2148 1077 RLEPKSDPTM---RIDWFFNGRPFATGSRVKTVYDFGFISLDMD-YVYA--RDSGEYICRATNKWGTAMTKAKVICKAKH 1150 (1884)
Q Consensus 1077 ~v~~~~~p~~---~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~-~~~~--~d~G~Y~C~a~n~~G~~~~~~~l~v~~~~ 1150 (1884)
.+. |.|++ .|.|+++|+.+.... ..++........ .+.. ++.+.|+|.|.|.....++...|.|...|
T Consensus 211 ~~~--g~~P~~~~~v~w~~~g~~l~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~ 284 (291)
T 1mq8_A 211 SLD--GLFPVSEAQVHLALGDQRLNPTV----TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EcC--CCCCCcccEEEEEECCEecCcee----eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCC
Confidence 997 55333 699999999987531 112222122111 1123 34777889998865556677778887644
No 274
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.64 E-value=4.3e-16 Score=174.38 Aligned_cols=175 Identities=15% Similarity=0.169 Sum_probs=122.1
Q ss_pred CCceeecCCCeEEEEEEEeeCCC-CCcEEEEeeCC--EEc------------cCCCcEEEEeeCCeEEEEEccCCCCCCe
Q psy2148 923 PTDLTLAESTLAHFECRLTPTND-PSMTVEWFHNG--KAL------------SAGSRIKTINDFGFVILEINDVYLRDSG 987 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~-P~~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 987 (1884)
+.++.+.+|++++|.|.+.+ +. +.+.|.|+|++ ..+ ....|+.+...++.+.|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~v~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 85 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSS-SNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA 85 (216)
T ss_dssp CSEEEECTTCCEEEEEECCT-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCcEEecCCCeEEEEEEeec-CCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence 56788999999999999642 33 35789999953 221 1235777766667789999999999999
Q ss_pred EEEEEEEcCCe--eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcC
Q psy2148 988 LYTCKATNKHG--EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLD 1065 (1884)
Q Consensus 988 ~Y~C~a~N~~G--~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 1065 (1884)
.|+|.|.|..| .......|.|...+ .+|.+...... ..
T Consensus 86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~---------------------------------------~~P~v~~~~~~-~~ 125 (216)
T 2xzc_L 86 DYYCGTWDSSLNPVFGGGTKLEIKRTV---------------------------------------AAPSVFIFPPS-DE 125 (216)
T ss_dssp EEEEEEECTTSCEEEBCCEEEEECCCC---------------------------------------BCCEEEEECCC-HH
T ss_pred EEEEEEEeCCCcceECCCEEEEEcCCC---------------------------------------CCCceEEeCCC-hh
Confidence 99999999886 22334567774321 24444432222 12
Q ss_pred cCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceE--EE-eeCc----EEEEEEcccCcCCcEEEEEEEEcCCee
Q psy2148 1066 VPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVK--TV-YDFG----FISLDMDYVYARDSGEYICRATNKWGT 1137 (1884)
Q Consensus 1066 v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~--~~-~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~G~ 1137 (1884)
...|+.++|.|.+.+ +.|.+ .|.|+|+|+.+..+.... .. ..++ .+.|.|..+..+|+|.|+|.|.|....
T Consensus 126 ~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (216)
T 2xzc_L 126 QLKSGTASVVCLLNN-FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 204 (216)
T ss_dssp HHHTTEEEEEEEEEE-EBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred hccCCcEEEEEEEEe-EcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence 235889999999984 24554 899999999987651111 11 1122 237999999999999999999998765
Q ss_pred eE
Q psy2148 1138 AM 1139 (1884)
Q Consensus 1138 ~~ 1139 (1884)
..
T Consensus 205 ~~ 206 (216)
T 2xzc_L 205 SP 206 (216)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 275
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.64 E-value=2.3e-15 Score=175.71 Aligned_cols=199 Identities=17% Similarity=0.234 Sum_probs=131.6
Q ss_pred eeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc-----------------cCCCcEEEEee--CCeEEEE
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL-----------------SAGSRIKTIND--FGFVILE 977 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i-----------------~~~~~~~~~~~--~~~~~L~ 977 (1884)
++..+.++.+.+|++|+|.|.+.+...+.+.|.|+|++ ..+ ....|+.+..+ ++...|.
T Consensus 29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 108 (282)
T 1qok_A 29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ 108 (282)
T ss_dssp EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence 34567788999999999999998432236789999953 211 01356666543 3567899
Q ss_pred EccCCCCCCeEEEEEEEcCCe---e--EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCC
Q psy2148 978 INDVYLRDSGLYTCKATNKHG---E--ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPN 1052 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~~G---~--~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1884)
|.+++.+|+|.|.|.|.|..| . ....+.|+|...+......... ....
T Consensus 109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~---------------------------~~~~ 161 (282)
T 1qok_A 109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSG---------------------------GGGS 161 (282)
T ss_dssp ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC------------------------------------------
T ss_pred ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCC---------------------------CCcc
Confidence 999999999999999999976 1 1234578887543200000000 0002
Q ss_pred CCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEE--CCEecc------------CCCceEEEeeCcEEEEEEcc
Q psy2148 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFF--NGRPFA------------TGSRVKTVYDFGFISLDMDY 1118 (1884)
Q Consensus 1053 ~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k--~~~~l~------------~~~~~~~~~~~~~~~l~i~~ 1118 (1884)
++.+..... .+.+.+|++++|.|.+. +.| +.+.||| +|..+. ...++....+....+|.|.+
T Consensus 162 ~~~~~~~p~-~~~v~~G~~v~L~C~~~--~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 237 (282)
T 1qok_A 162 ENVLTQSPA-IMSASPGEKVTITCSAS--SSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISR 237 (282)
T ss_dssp CCCEEEECS-EEEECTTCCEEEEEEES--SCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred ceEEecCCC-EEEEcCCCcEEEEEEec--CCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEcc
Confidence 333333332 36788999999999997 666 7899999 665541 13455555555677899999
Q ss_pred cCcCCcEEEEEEEEcCCeeeE-EEEEEEEee
Q psy2148 1119 VYARDSGEYICRATNKWGTAM-TKAKVICKA 1148 (1884)
Q Consensus 1119 ~~~~d~G~Y~C~a~n~~G~~~-~~~~l~v~~ 1148 (1884)
+..+|+|.|.|.|.|..+... ....|.|..
T Consensus 238 v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 238 MEAEDAATYYCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp CCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred CChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence 999999999999998644322 235666653
No 276
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.64 E-value=7.1e-16 Score=175.14 Aligned_cols=221 Identities=10% Similarity=0.035 Sum_probs=117.7
Q ss_pred CCceeeccccccccCCCceEEEEEEEEEcCCCceEEEEeeCCEeeccccceE-EEeeCCeEEEEEcCCCCCCCEEEEEEE
Q psy2148 307 YPLFSLQFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRA 385 (1884)
Q Consensus 307 ~p~~~~~~~~~~~v~~g~~~~l~c~~~~~g~p~~~i~W~k~g~~i~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a 385 (1884)
+|.+...+ ...+.+|+.++|.|.. . .+.+.+.|+|+|..+....... .........|.|.+++.+|+|.|+|.+
T Consensus 7 kP~i~~~P--~~~V~~G~~VtL~C~~--~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 81 (257)
T 1b6u_A 7 KPSLLAHP--GPLVKSEETVILQCWS--D-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG 81 (257)
T ss_dssp CCEECCBS--CSEEESSCCEEEEEEE--S-SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred CCEEEEcC--CCEecCCCCEEEEEec--C-CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence 34444333 3458899999999986 3 3467999999987653211100 001123467999999999999999999
Q ss_pred EcCCe-----eeEEEEEEEEeecCCCCCCceEeccCCccCccCCCeEEEEEEEeeCCCCCCeEEEeeCCEEccccCcEEE
Q psy2148 386 TNKWG-----QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 460 (1884)
Q Consensus 386 ~n~~g-----~~~~~~~l~V~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~ 460 (1884)
.|..+ ..+..+.|.|... ..+|.+...+. ..+.+|++++|.|.+. +. ...+.|+|+|..+........
T Consensus 82 ~~~~~~~~~s~~S~~~~L~V~~~--~~~P~l~~~p~--~~V~~G~~vtL~C~~~--~~-~~~~~w~k~g~~~~~~~~~~~ 154 (257)
T 1b6u_A 82 SVTHSPYQLSAPSDPLDIVITGL--YEKPSLSAQPG--PTVLAGESVTLSCSSR--SS-YDMYHLSREGEAHERRFSAGP 154 (257)
T ss_dssp ECSSCTTSCCCCCCCEEEEEECS--SCCCEEECSSC--TTCBTTCEEEEEEECS--SC-CSEEEEEETTSSCEECCBCBC
T ss_pred eccCCCccccccCCCEEEecccC--CCCcceEccCC--CccCCCCEEEEEEeCC--CC-CcEEEEEECCcccCccccccc
Confidence 87532 2234566666532 24666665543 2478999999999986 33 468999999987654322111
Q ss_pred Eec-CCEEEEEEcccCCCCcEEEEEEEEeCce----ecC--CcceEEeecccCCCCCCCccccCCCCeEEEEEEEeeCCC
Q psy2148 461 VSD-FGFVVMDIAYVQSHDSGEYVCRAWNNFI----FIP--PFPIFIFHQIRLPSPSQDNLDVPEAGKVHFDCRLEPKSD 533 (1884)
Q Consensus 461 ~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~~----~~~--~~~~~~~~~~~~~~~~~~~~~v~~g~~~~L~C~~~~~~~ 533 (1884)
... .....|.|.+++ |+|.|+|.|.|... ... ...+.+...+......+.......|..+.|.|.+ +.
T Consensus 155 ~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~---~~ 229 (257)
T 1b6u_A 155 KVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA---EQ 229 (257)
T ss_dssp CSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-----------------------------
T ss_pred ccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE---cc
Confidence 111 123579999998 99999999997632 111 1222222222111111222345678999999987 66
Q ss_pred CccEEEEeeCC
Q psy2148 534 PTMRIDWFFNG 544 (1884)
Q Consensus 534 p~~~i~W~~~~ 544 (1884)
+.+.+.|...+
T Consensus 230 ~~~~~~~~~~~ 240 (257)
T 1b6u_A 230 KLISEEDLNLD 240 (257)
T ss_dssp -----------
T ss_pred hHHHHHHhhhh
Confidence 77789998754
No 277
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.64 E-value=5.3e-16 Score=180.69 Aligned_cols=185 Identities=18% Similarity=0.295 Sum_probs=125.7
Q ss_pred CeeeecCCceeecCCCeEEEEEEEee-CCCCCcEEEEeeCCEEccCC------------------CcEEEEee--CCeEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTP-TNDPSMTVEWFHNGKALSAG------------------SRIKTIND--FGFVI 975 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~-~~~P~~~v~W~~~g~~i~~~------------------~~~~~~~~--~~~~~ 975 (1884)
+.+...+.++.+.+|++++|.|.+.. .+.|.+.|.|+|++...... .|+.+..+ .+...
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 45666777899999999999999862 14577889999976533221 33333211 12247
Q ss_pred EEEccCCCCCCeEEEEEEEcCCeeE--EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCC
Q psy2148 976 LEINDVYLRDSGLYTCKATNKHGEA--TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNP 1053 (1884)
Q Consensus 976 L~I~~~~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1884)
|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|. +. .
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~---------------------------------------~ 124 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PE---------------------------------------E 124 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CC---------------------------------------C
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--cc---------------------------------------C
Confidence 9999999999999999999976654 344455553 11 1
Q ss_pred CceeeecCCCcCcCCCCcEEEEEEEee-CCCCCcEEEEEEC-CEeccCC---------------------CceEEEe--e
Q psy2148 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEP-KSDPTMRIDWFFN-GRPFATG---------------------SRVKTVY--D 1108 (1884)
Q Consensus 1054 p~~~~~~~~~~~v~~g~~~~l~C~v~~-~~~p~~~v~W~k~-~~~l~~~---------------------~~~~~~~--~ 1108 (1884)
|. ...+.+|+.+.|.|.+.+ .+.|.+.|.|+|+ +..+... .++.... .
T Consensus 125 p~-------~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 197 (268)
T 3mj6_A 125 PR-------DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDIS 197 (268)
T ss_dssp CS-------EEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGG
T ss_pred CC-------ccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCC
Confidence 11 245678999999999942 3778999999994 3222111 0111110 1
Q ss_pred CcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEEeec
Q psy2148 1109 FGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKAK 1149 (1884)
Q Consensus 1109 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v~~~ 1149 (1884)
.....|.|.++..+|+|.|+|.|.|..|.....+.|.|...
T Consensus 198 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~ 238 (268)
T 3mj6_A 198 RNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238 (268)
T ss_dssp GTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence 23457999999999999999999999999999999998543
No 278
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.64 E-value=1.4e-15 Score=170.08 Aligned_cols=173 Identities=13% Similarity=0.105 Sum_probs=125.2
Q ss_pred CCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--e---ecC--------------CCCCeEEEEe--CceeEEEEccc
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--F---PIT--------------SSPDFQIHTF--STKSILIMRQV 1702 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~---~~~--------------~~~~~~~~~~--~~~~~L~i~~v 1702 (1884)
+..+.+.+|++++|.|.+.+.| .+.+.|+|.. . .+. ...++.+... .+..+|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 4567899999999999999876 6889999853 1 110 1246666543 34568999999
Q ss_pred ccCCCeEEEEEEEeCCce---EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CC--cEEEE
Q psy2148 1703 FMEDSGVFAVIAENRGGK---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP--LDVYW 1776 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~--p~v~W 1776 (1884)
+.+|+|.|.|.+.|..+. ....+.|.|...+. .+|.+...+ ...+..|+.++|.|.+.|. |. +.|.|
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~------~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W 159 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESA------RNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTW 159 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCC------BCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEE
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecCCCC------CCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEE
Confidence 999999999999998653 22346788875321 467776554 4456789999999999986 76 79999
Q ss_pred EeCCEecCC-CCCeEEeecCC---eEEEEEccCCCCCCEEEEEEEEeCCeeEE
Q psy2148 1777 LKNGKKIIP-DIRYKTLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAGEAR 1825 (1884)
Q Consensus 1777 ~k~~~~l~~-~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 1825 (1884)
++++..+.. ........++. ...|.|.....+|.|.|+|.|.|..|...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 160 GKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp SCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred ecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 999976521 11111111121 12599999989999999999999998755
No 279
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.64 E-value=1.2e-15 Score=173.80 Aligned_cols=182 Identities=16% Similarity=0.230 Sum_probs=120.4
Q ss_pred eeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEc---------------cCCCcEEEEe-eCCeEEEEEc
Q psy2148 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKAL---------------SAGSRIKTIN-DFGFVILEIN 979 (1884)
Q Consensus 918 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i---------------~~~~~~~~~~-~~~~~~L~I~ 979 (1884)
.+...+.++.+.+|++|+|.|. . +.|.+.|.|+|+ +..+ ....|+.+.. ..+..+|.|.
T Consensus 2 ~v~q~p~~~~v~~G~~v~L~C~-~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~ 78 (238)
T 2p1y_A 2 AVTQSPRNKVAVTGGKVTLSCN-Q--TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILE 78 (238)
T ss_dssp CEEEECSEEEEETTCCEEEEEE-E--CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEES
T ss_pred cceECccceEEeCCCEEEEEee-c--CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEe
Confidence 3566778899999999999999 5 668889999995 2111 1134665553 2345589999
Q ss_pred cCCCCCCeEEEEEEEcCCeeE-----EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCC
Q psy2148 980 DVYLRDSGLYTCKATNKHGEA-----TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~G~~-----~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1054 (1884)
+++.+|+|.|+|.|.|..|.. ...+.|.|...+.... .+... ..+
T Consensus 79 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~---p~~~~---------------------------~~~ 128 (238)
T 2p1y_A 79 LATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAK---KDAAK---------------------------KDG 128 (238)
T ss_dssp SCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHH---HHHHH---------------------------HHT
T ss_pred cCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCc---CCccc---------------------------cee
Confidence 999999999999999987631 1235677764321000 00000 001
Q ss_pred ceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECC--Ee---c---------cCCCceEEEe--eCcEEEEEEcc
Q psy2148 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG--RP---F---------ATGSRVKTVY--DFGFISLDMDY 1118 (1884)
Q Consensus 1055 ~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~--~~---l---------~~~~~~~~~~--~~~~~~l~i~~ 1118 (1884)
.+..... .+.+.+|++++|.|.+. +.|.+.+.|+|++ .. + ..+.++.+.. ..+...|.|.+
T Consensus 129 ~v~~~p~-~~~v~~G~~v~L~C~~~--~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 205 (238)
T 2p1y_A 129 QVRQSPQ-SLTVWEGETAILNCSYE--NSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIAD 205 (238)
T ss_dssp CCEEECS-EEEEETTSCEEEEEECC--CTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETT
T ss_pred eEEccCc-eEEEeCCCeEEEEEEEe--cCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcC
Confidence 2222222 35678999999999997 7788899999964 11 1 1123444432 33457899999
Q ss_pred cCcCCcEEEEEEEEcCC
Q psy2148 1119 VYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1119 ~~~~d~G~Y~C~a~n~~ 1135 (1884)
++.+|+|.|+|.|.|..
T Consensus 206 v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 206 SQPGDSATYFCAAIDTN 222 (238)
T ss_dssp CCGGGCEEEEEEEEETT
T ss_pred CCHHHCEEEEEEEeeCC
Confidence 99999999999999984
No 280
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.64 E-value=4e-15 Score=166.86 Aligned_cols=177 Identities=13% Similarity=0.109 Sum_probs=124.9
Q ss_pred CCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--e---ec--------------CCCCCeEEEEeC--ceeEEEEccc
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--F---PI--------------TSSPDFQIHTFS--TKSILIMRQV 1702 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~---~~--------------~~~~~~~~~~~~--~~~~L~i~~v 1702 (1884)
+..+.+.+|++++|.|.+.+.+ .+.+.|+|.. . .+ ....++.+.... +..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 4567899999999999999876 4889999853 1 11 012466665432 3578999999
Q ss_pred ccCCCeEEEEEEEeCCc----e--EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCc-EE
Q psy2148 1703 FMEDSGVFAVIAENRGG----K--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DV 1774 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~g----~--~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v 1774 (1884)
+.+|+|.|.|.+.+..| . ....+.|.|...+. .+|.+........+..|+.++|.|.+.|. |.| .|
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~------~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v 160 (223)
T 1dee_B 87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSA------SAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITF 160 (223)
T ss_dssp CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCC------BCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEE
T ss_pred CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCC------CCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEE
Confidence 99999999999998753 1 22345788874211 36766643333346789999999999986 877 99
Q ss_pred EEEe-CCEecCCCCCe-EEeecCC---eEEEEEccCCC--CCCEEEEEEEEeCCeeEEEEE
Q psy2148 1775 YWLK-NGKKIIPDIRY-KTLEEDN---LFTLLIIEAVV--EDSGAYECVAMNNAGEARCEA 1828 (1884)
Q Consensus 1775 ~W~k-~~~~l~~~~~~-~~~~~~~---~~~L~i~~~~~--~d~G~Y~C~a~N~~G~~~~~~ 1828 (1884)
+|++ +|..+.....+ ....++. ...|+|..... +|.|.|+|.|.|..|......
T Consensus 161 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 161 SWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp EEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred EeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 9999 98887541000 0001111 23688888776 889999999999999876654
No 281
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.64 E-value=1.1e-16 Score=178.71 Aligned_cols=176 Identities=16% Similarity=0.231 Sum_probs=123.0
Q ss_pred eeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEcc------------CCCcEEEEeeCCeEEEEEccCCCC
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKALS------------AGSRIKTINDFGFVILEINDVYLR 984 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~I~~~~~~ 984 (1884)
+.. +..+.+.+|++++|.|.+. +.|.+.|.|+|+ |..+. ...|+.+...++...|.|.+++.+
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 79 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSGD--QLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPE 79 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEET--TGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGG
T ss_pred eEC-CCeEEEeCCCcEEEEEecC--CCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcc
Confidence 344 6788999999999999987 667778999984 33331 146777766667779999999999
Q ss_pred CCeEEEEEEEcC-CeeE--EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecC
Q psy2148 985 DSGLYTCKATNK-HGEA--TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQ 1061 (1884)
Q Consensus 985 D~G~Y~C~a~N~-~G~~--~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1061 (1884)
|+|.|+|.|.|. .+.. ...+.|.|...+. .+|.+.....
T Consensus 80 D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~--------------------------------------~~p~v~~~~~ 121 (212)
T 1nfd_E 80 DEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPK--------------------------------------SSPKVTVFPP 121 (212)
T ss_dssp GCSEEEEEEEETTTTEEEECCCEEEEEECCCC--------------------------------------BCCEEECCCC
T ss_pred cCEEEEEEEEcccCcccccCCceEEEEccCCC--------------------------------------CCCEEEeeCC
Confidence 999999999973 2221 2335677753211 2343332222
Q ss_pred CCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceEEE--eeCc---EEEEEEcccCcCCcEEEEEEEEcCC
Q psy2148 1062 DNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVKTV--YDFG---FISLDMDYVYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1062 ~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~~~--~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~ 1135 (1884)
. ..+.+|+.+.|.|.+.+. .|. +.|.|+|+|+.+..+...... ..++ ...|.|.++..+|+|.|+|.|.|..
T Consensus 122 ~-~~~~~g~~v~L~C~~~g~-~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 199 (212)
T 1nfd_E 122 S-PEELRTNKATLVCLVNDF-YPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEG 199 (212)
T ss_dssp C-HHHHHTTEECCCEEEEEE-BSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTT
T ss_pred c-hHhccCCceEEEEEEEee-ECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCC
Confidence 1 234578999999999842 244 799999999998765321110 1111 2359999999999999999999987
Q ss_pred ee
Q psy2148 1136 GT 1137 (1884)
Q Consensus 1136 G~ 1137 (1884)
+.
T Consensus 200 ~~ 201 (212)
T 1nfd_E 200 ET 201 (212)
T ss_dssp TT
T ss_pred ce
Confidence 65
No 282
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.64 E-value=7.2e-14 Score=187.51 Aligned_cols=169 Identities=18% Similarity=0.231 Sum_probs=119.7
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccC-CCCCCeEEEEEEEcCCeeEEEEEEEEE
Q psy2148 930 ESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDV-YLRDSGLYTCKATNKHGEATTSCKLTV 1008 (1884)
Q Consensus 930 ~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 1008 (1884)
.+..+.|.|.+. |.|.|.|.|.|+|.++..-.+ ..|.|..+ ....++.|.|.+.|..|..... .+.+
T Consensus 90 ~~g~l~v~c~~~--g~P~p~i~W~k~g~~~~~~~~---------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~ 157 (731)
T 2v5y_A 90 PPGLLNVYVKVN--NGPLGNPIWNISGDPTRTWNR---------AELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKV 157 (731)
T ss_dssp CSEEEEEEEEET--TCCCCSEEEEECCCCCSSCEE---------EEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEE
T ss_pred CcceEEEEEecC--CCCccceeEEEeCCcCCceeE---------EEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEe
Confidence 345899999998 788899999999988743211 14666655 3334589999999998875532 2222
Q ss_pred EeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEE
Q psy2148 1009 KGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRI 1088 (1884)
Q Consensus 1009 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v 1088 (1884)
...+ -..+|.|. .+. .+.+.+|+++.|.|.+. |.|.+.+
T Consensus 158 ~~~~-------------------------------------~~~~p~~~-~~~-~~~v~~G~~v~l~C~~~--g~P~p~i 196 (731)
T 2v5y_A 158 LGHP-------------------------------------CTRTPHFL-RIQ-NVEVNAGQFATFQCSAI--GRTVAGD 196 (731)
T ss_dssp ESSC-------------------------------------CSSSCEEC-CCC-CEEEETTSCEEEEEEEE--SCCCTTC
T ss_pred eecc-------------------------------------cccccccc-ccc-ceEEeCCCcEEEEEEeC--CCCCCce
Confidence 2110 01456665 333 47889999999999998 7888888
Q ss_pred E-EE--ECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCee-eEEEEEEEEeeccc
Q psy2148 1089 D-WF--FNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT-AMTKAKVICKAKHD 1151 (1884)
Q Consensus 1089 ~-W~--k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~-~~~~~~l~v~~~~~ 1151 (1884)
. |+ +||+.+.......+........|.|.++...|+|.|+|.|.|..|. .+..+.|.|..+|.
T Consensus 197 ~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~ 263 (731)
T 2v5y_A 197 RLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV 263 (731)
T ss_dssp EEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCC
T ss_pred eEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCC
Confidence 7 88 7888775432221111222468999999999999999999999998 67778888876554
No 283
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.64 E-value=8.8e-16 Score=145.36 Aligned_cols=94 Identities=24% Similarity=0.497 Sum_probs=86.3
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCC--cEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS--RIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
.||.|...+.++++.+|+.+.|.|.+. |.|.|.|+|+|||++|.... ++.+...++.++|.|.+++.+|+|.|+|.
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~--g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 81 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLS 81 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEE--EESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEE--EecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEE
Confidence 579999999999999999999999998 67889999999999997654 67888888888999999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEe
Q psy2148 993 ATNKHGEATTSCKLTVKG 1010 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~ 1010 (1884)
|+|.+|..+.++.|.|++
T Consensus 82 a~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 82 LGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCEEEEEEEEEEEE
Confidence 999999999999999973
No 284
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.64 E-value=1.1e-15 Score=171.51 Aligned_cols=176 Identities=11% Similarity=0.085 Sum_probs=127.0
Q ss_pred cCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--ee---c---CC-------------CCCeEEEEe--CceeEEEE
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I---TS-------------SPDFQIHTF--STKSILIM 1699 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~---~---~~-------------~~~~~~~~~--~~~~~L~i 1699 (1884)
.+..+.+.+|+++.|.|.+.+.| .+.+.|+|++ .. + .. ..++.+... .+..+|.|
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (220)
T 1pz5_B 6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence 35667899999999999999876 7899999863 11 1 00 246665543 23458999
Q ss_pred cccccCCCeEEEEEEEeCCceE-E--EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCc-EE
Q psy2148 1700 RQVFMEDSGVFAVIAENRGGKA-K--CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DV 1774 (1884)
Q Consensus 1700 ~~v~~~DsG~Y~C~a~n~~g~~-~--~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v 1774 (1884)
.+++.+|+|.|.|.+.|..+.. . ..+.|.|..... .+|.+...+....+.+|+.++|.|.+.|. |.| .|
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~------~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v 159 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATT------TAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTV 159 (220)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCC------BCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEE
T ss_pred ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCC------CCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEE
Confidence 9999999999999999976432 2 346777764221 46777765545557889999999999997 988 99
Q ss_pred EEEeCCEecC--CCCCeEEeecC---CeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2148 1775 YWLKNGKKII--PDIRYKTLEED---NLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAE 1829 (1884)
Q Consensus 1775 ~W~k~~~~l~--~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 1829 (1884)
+|++++..+. ...... ..+ ....|.|.++..+| |.|+|.|.|..|..++++.
T Consensus 160 ~W~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 160 KWNYGALSSGVRTVSSVL--QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp EEGGGTCCTTEEECCCEE--ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred EEecCCcccceEEcCCcc--cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence 9999987421 001000 111 12479999988877 9999999999998766654
No 285
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.64 E-value=1.1e-15 Score=144.63 Aligned_cols=94 Identities=23% Similarity=0.413 Sum_probs=87.8
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCC--CeEEeecCCeEEEEEccCCCCCCEEEEEEEE
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDI--RYKTLEEDNLFTLLIIEAVVEDSGAYECVAM 1818 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 1818 (1884)
.||.|...+.+..+.+|+.++|.|.+.|.|.|.|+|+|||+.|.... ++.+...++.++|.|.++..+|+|.|+|.|.
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 83 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence 68999999999999999999999999999999999999999997654 7888888888899999999999999999999
Q ss_pred eCCeeEEEEEEEEEEe
Q psy2148 1819 NNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1819 N~~G~~~~~~~l~V~~ 1834 (1884)
|.+|.+++++.|.|++
T Consensus 84 N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 84 NEFGSDSATVNIHIRS 99 (100)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred ECCCEEEEEEEEEEEE
Confidence 9999999999999975
No 286
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.64 E-value=2.8e-15 Score=172.86 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=129.5
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccC------CCeEEEEeC--Ceec------------CCCCCeEEEEeCceeEEE
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDP------LPTIKWFRE--DFPI------------TSSPDFQIHTFSTKSILI 1698 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p------~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~L~ 1698 (1884)
.+.+...+..+.+.+|++++|.|.+.+.| .+.+.|+|+ +..+ ....++.+.......+|.
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~ 84 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT 84 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence 35566778888999999999999999988 689999985 2211 013567766656678999
Q ss_pred EcccccCCCeEEEEEEEeCCce-EEEEEEEEEEecccC--------CCCCC-CCCeEEeccCceEEcCCceEEEEEEEec
Q psy2148 1699 MRQVFMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQG--------GRGGV-VPPSFLTTISSAVINVGQLARFDAKISA 1768 (1884)
Q Consensus 1699 i~~v~~~DsG~Y~C~a~n~~g~-~~~~~~l~V~~~~~~--------~~~~~-~~P~~~~~~~~~~~~~G~~~~l~C~~~g 1768 (1884)
|.+++.+|+|.|.|.+.|..+. ....+.|.|...+.. ..... .++.....+....+.+|++++|.|.+.+
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~ 164 (264)
T 2gjj_A 85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG 164 (264)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence 9999999999999999987553 233467888754210 00000 0122223334457899999999999999
Q ss_pred CCC--cEEEEEeCC--Ee---cC----C----------CCCeEEee--cCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1769 TKP--LDVYWLKNG--KK---II----P----------DIRYKTLE--EDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1769 ~p~--p~v~W~k~~--~~---l~----~----------~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.|. +.|.|+|++ .. +. . ..|+.+.. ......|+|.++..+|+|.|+|.|.|.
T Consensus 165 ~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 165 YSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp SCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 874 799999973 21 10 0 34555543 345679999999999999999999995
No 287
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.64 E-value=1.9e-15 Score=169.05 Aligned_cols=177 Identities=16% Similarity=0.264 Sum_probs=121.8
Q ss_pred eecCCceeecCCCeEEEEEEEeeC-----CCCCcEEEEeeCCEE------c-----------cCCCcEEEEee--CCeEE
Q psy2148 920 LTTPTDLTLAESTLAHFECRLTPT-----NDPSMTVEWFHNGKA------L-----------SAGSRIKTIND--FGFVI 975 (1884)
Q Consensus 920 ~~~~~~~~v~~G~~v~l~C~v~~~-----~~P~~~v~W~~~g~~------i-----------~~~~~~~~~~~--~~~~~ 975 (1884)
+..+.++.+.+|++++|.|.+.+. +.+.+.|.|+|++.. + ....|+.+..+ .+...
T Consensus 4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s 83 (214)
T 2zg1_A 4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS 83 (214)
T ss_dssp EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence 345678899999999999999832 125789999998753 1 11246655432 23457
Q ss_pred EEEccCCCCCCeEEEEEEEcCCeeEE----EEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCC
Q psy2148 976 LEINDVYLRDSGLYTCKATNKHGEAT----TSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKP 1051 (1884)
Q Consensus 976 L~I~~~~~~D~G~Y~C~a~N~~G~~~----~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1884)
|.|.+++.+|+|.|.|.|.|..+... ..+.|.|...+
T Consensus 84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------- 124 (214)
T 2zg1_A 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI--------------------------------------- 124 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC---------------------------------------
T ss_pred EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC---------------------------------------
Confidence 99999999999999999999864332 35778887532
Q ss_pred CCCceeeecCCCcCcCCCCcEEEEEEEeeC--CCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEE
Q psy2148 1052 NPPVFTSQLQDNLDVPEAGKVHFDCRLEPK--SDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYIC 1129 (1884)
Q Consensus 1052 ~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~--~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 1129 (1884)
.+|.+.. . ..+.+|+.++|.|.+.+. +.|.|.|.|+|++..+.... . .....|.|..+..+|+|.|+|
T Consensus 125 ~~p~i~~--~--~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~-~-----~~~~~L~i~~~~~~~~g~Y~C 194 (214)
T 2zg1_A 125 EKPDIHF--L--EPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE-T-----TRSSELTLTPRPEDHGTNLTC 194 (214)
T ss_dssp CCCEEC------CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSS-C-----CCSSEEEECCCTTCCSCEEEE
T ss_pred CCCceec--C--ccccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCCC-c-----eeEEEEEEecccHHcCcEEEE
Confidence 1233322 1 135689999999999731 24889999999997653221 1 223479999999999999999
Q ss_pred EEEcCCeeeEEEEEEE
Q psy2148 1130 RATNKWGTAMTKAKVI 1145 (1884)
Q Consensus 1130 ~a~n~~G~~~~~~~l~ 1145 (1884)
.|.|..|....+..+.
T Consensus 195 ~a~n~~~~~~~~~~v~ 210 (214)
T 2zg1_A 195 QMKRQGAQVTTERTVQ 210 (214)
T ss_dssp EEECC----CCEEEEE
T ss_pred EEEeCCCCcceEEEEE
Confidence 9999876544444443
No 288
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.64 E-value=1.3e-15 Score=174.52 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=129.5
Q ss_pred eeeecCCceeecCCCeEEEEEEEeccCCCeEEEEe----------------CCeecCCC---CCeEEEE-eCceeEEEEc
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR----------------EDFPITSS---PDFQIHT-FSTKSILIMR 1700 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~----------------~~~~~~~~---~~~~~~~-~~~~~~L~i~ 1700 (1884)
.++..+..+.+.+|+++.|.|.+.+.|.+.|.|+| ++...... .++.+.. .....+|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~ 82 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT 82 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence 35566778899999999999999999999999999 33322222 3555543 2456789999
Q ss_pred ccccCCCeEEEEEEEeCCc----eEEEEEEEEEEecccCCCCCCCCCeEE-eccCceEEcCCceEEEEEEEecCCCc--E
Q psy2148 1701 QVFMEDSGVFAVIAENRGG----KAKCSANLVVEEKRQGGRGGVVPPSFL-TTISSAVINVGQLARFDAKISATKPL--D 1773 (1884)
Q Consensus 1701 ~v~~~DsG~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~~P~~~-~~~~~~~~~~G~~~~l~C~~~g~p~p--~ 1773 (1884)
+++.+|+|.|.|.+.|..+ .......|.|...... ..+|.+. ..+....+..|+.++|.|.+.|.|++ .
T Consensus 83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~----~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~ 158 (246)
T 4dzb_B 83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKN----VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE 158 (246)
T ss_dssp SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGG----CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCc----ccCCceEeecCCchhccCCCcEEEEEEEccCcCCceE
Confidence 9999999999999988643 2334567888742111 1356654 34455556779999999999996654 8
Q ss_pred EEEEeCCEecCCCCCeEEee-------cCCe----EEEEEccCCCCC-CEEEEEEEEeCCeeEE
Q psy2148 1774 VYWLKNGKKIIPDIRYKTLE-------EDNL----FTLLIIEAVVED-SGAYECVAMNNAGEAR 1825 (1884)
Q Consensus 1774 v~W~k~~~~l~~~~~~~~~~-------~~~~----~~L~i~~~~~~d-~G~Y~C~a~N~~G~~~ 1825 (1884)
|+|+|+|..+....+..... .++. ..|.|.....+| .|.|+|.|.|......
T Consensus 159 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 159 LSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp EEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred EEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 99999999986543211100 1222 248889888888 9999999999876543
No 289
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.63 E-value=3.4e-15 Score=170.06 Aligned_cols=190 Identities=18% Similarity=0.239 Sum_probs=126.7
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EE---c---------cCCCcEEEEeeCCeEEEEEccCC
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KA---L---------SAGSRIKTINDFGFVILEINDVY 982 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~---i---------~~~~~~~~~~~~~~~~L~I~~~~ 982 (1884)
+.+...+.++.+.+|++|+|.|.+. +.|.+.|.|+|++ .. + ....|+.+...++..+|.|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 79 (242)
T 2znx_A 2 IVLTQSPATLSVTPGNSVSLSCRAS--QSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVE 79 (242)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred CcEEEcCCeEEEcCCCcEEEEEEeC--CCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCC
Confidence 3566778889999999999999998 6678899999953 11 1 12457777666667789999999
Q ss_pred CCCCeEEEEEEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecC
Q psy2148 983 LRDSGLYTCKATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQ 1061 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1061 (1884)
.+|+|.|.|.|.|..+.. ...+.|.|..++....... ....++.++....
T Consensus 80 ~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~ 130 (242)
T 2znx_A 80 TEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGS-----------------------------GGGGSDIQLQESG 130 (242)
T ss_dssp GGGCEEEEEEECSSSSCEECCCEEEEEC--------------------------------------------CCEEEEEC
T ss_pred hHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccc-----------------------------cccccceeeecCC
Confidence 999999999999986532 2345788875432100000 0001222333333
Q ss_pred CCcCcCCCCcEEEEEEEeeCCCCCcEEEEEEC--CEecc----------------CCCceEEEee--CcEEEEEEcccCc
Q psy2148 1062 DNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFN--GRPFA----------------TGSRVKTVYD--FGFISLDMDYVYA 1121 (1884)
Q Consensus 1062 ~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~--~~~l~----------------~~~~~~~~~~--~~~~~l~i~~~~~ 1121 (1884)
. ..+.+|++++|.|.+.+...+.+.+.|+|+ +..+. ...++.+..+ ....+|.|.+++.
T Consensus 131 ~-~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 209 (242)
T 2znx_A 131 P-SLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT 209 (242)
T ss_dssp C-SEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred c-ceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCc
Confidence 3 458899999999999832223578999995 33221 1234444432 3456899999999
Q ss_pred CCcEEEEEEEEcC--Ceee
Q psy2148 1122 RDSGEYICRATNK--WGTA 1138 (1884)
Q Consensus 1122 ~d~G~Y~C~a~n~--~G~~ 1138 (1884)
+|+|.|.|.|.|. +|..
T Consensus 210 ~D~G~Y~C~a~~~~~fG~g 228 (242)
T 2znx_A 210 EDTATYYCANXDGDYXGQG 228 (242)
T ss_dssp GGCEEEEEEETTSSCBCCC
T ss_pred CcCEEEEEeccCCcccCCC
Confidence 9999999999984 4544
No 290
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.63 E-value=3.3e-16 Score=178.02 Aligned_cols=182 Identities=17% Similarity=0.212 Sum_probs=124.2
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCc-EEEEeeCC--EEc------------cCCCcEEEEeeCCeEEEEEccC
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSM-TVEWFHNG--KAL------------SAGSRIKTINDFGFVILEINDV 981 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~-~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~ 981 (1884)
+.+.. +..+.+.+|++++|.|.+.+. .+.+ .|.|+|++ ..+ ....|+.+...++...|.|.++
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 98 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSS-NIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGL 98 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTT-TTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESC
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCC-CCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCC
Confidence 44455 778899999999999999842 2334 79999963 222 1235777666666778999999
Q ss_pred CCCCCeEEEEEEEcCCee---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceee
Q psy2148 982 YLRDSGLYTCKATNKHGE---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTS 1058 (1884)
Q Consensus 982 ~~~D~G~Y~C~a~N~~G~---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1058 (1884)
+.+|+|.|+|.|.|..|. ....+.|.|...+. .+|.+..
T Consensus 99 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------------~~p~v~~ 140 (234)
T 2j6e_L 99 RSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPK--------------------------------------AAPSVTL 140 (234)
T ss_dssp CSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCC--------------------------------------CCCCCCE
T ss_pred CHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCC--------------------------------------CCCcccc
Confidence 999999999999999873 22234555532110 2444433
Q ss_pred ecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceEE-E-eeC----cEEEEEEcccCcCCcEEEEEEE
Q psy2148 1059 QLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVKT-V-YDF----GFISLDMDYVYARDSGEYICRA 1131 (1884)
Q Consensus 1059 ~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~~-~-~~~----~~~~l~i~~~~~~d~G~Y~C~a 1131 (1884)
.... ..+.+|+.++|.|.+.+ ..|. +.|.|+|||+.+..+..... . ..+ ....|.|..+..+|+|.|+|.|
T Consensus 141 ~~~~-~~~~~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 218 (234)
T 2j6e_L 141 FPPS-SEELQANKATLVCLISD-FFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQV 218 (234)
T ss_dssp ECCC-HHHHTTSCCCEEECCCB-CSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEE
T ss_pred cCCC-hhHhcCCceEEEEEEEE-EcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEE
Confidence 2222 22335889999999973 2343 58999999999876521110 0 111 1357999999999999999999
Q ss_pred EcCCeeeEE
Q psy2148 1132 TNKWGTAMT 1140 (1884)
Q Consensus 1132 ~n~~G~~~~ 1140 (1884)
.|..+....
T Consensus 219 ~n~~~~~~~ 227 (234)
T 2j6e_L 219 THEGSTVEK 227 (234)
T ss_dssp EBTTBCCCE
T ss_pred EeCCCceEE
Confidence 999876443
No 291
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.63 E-value=1.9e-14 Score=154.20 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=119.3
Q ss_pred eeecCCCeEEEEEEEeccCCC--eEEEEeCCeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEEEEEE
Q psy2148 1649 CRAFEQDQARFEVEFDGDPLP--TIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCSAN 1726 (1884)
Q Consensus 1649 ~~v~~G~~~~l~C~~~g~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 1726 (1884)
+.+..|++++|.|.+ |.|.| .|+|++.+..+ . +.........|.|.+++.+|+|.|.|.|.|..|.....+.
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~--~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ 90 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---G--AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ 90 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---C--CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---C--cEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence 689999999999999 99988 99999976544 1 2223456778999999999999999999999998889999
Q ss_pred EEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CC----cEEEEEeCCEecCCCCC-e-EEe------e
Q psy2148 1727 LVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP----LDVYWLKNGKKIIPDIR-Y-KTL------E 1793 (1884)
Q Consensus 1727 l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~----p~v~W~k~~~~l~~~~~-~-~~~------~ 1793 (1884)
|+|.. +|........ .+..|+.+ |.|.+.|. |. ++|.|+||+.+|..... . .+. .
T Consensus 91 ltV~~----------~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~ 158 (210)
T 1gsm_A 91 LLVYA----------FPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQ 158 (210)
T ss_dssp EEEEB----------CCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCS
T ss_pred EEEEe----------cCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceeccccccc
Confidence 99994 6655543222 66778888 99999985 74 58999999999954421 0 110 0
Q ss_pred --cCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEE
Q psy2148 1794 --EDN----LFTLLIIEAVVEDSGAYECVAMNNAGEAR 1825 (1884)
Q Consensus 1794 --~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 1825 (1884)
... ..+|.+.....+|.+.|+|.|.|.+-...
T Consensus 159 ~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~ 196 (210)
T 1gsm_A 159 GDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLE 196 (210)
T ss_dssp SCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred CCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCc
Confidence 111 12455556666777899999999875443
No 292
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.63 E-value=2.6e-14 Score=153.23 Aligned_cols=165 Identities=14% Similarity=0.201 Sum_probs=117.4
Q ss_pred eeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEE
Q psy2148 926 LTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCK 1005 (1884)
Q Consensus 926 ~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 1005 (1884)
+.|.+|++++|+|.+ +.+.|.+.|+|++.+..+ .+... ..+...|.|.+++.+|+|.|.|.|.|..|..+..+.
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ 90 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS--DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ 90 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE--ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe--cCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence 689999999999999 434444499999976555 23222 234558999999999999999999999999989999
Q ss_pred EEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCC-
Q psy2148 1006 LTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDP- 1084 (1884)
Q Consensus 1006 l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p- 1084 (1884)
|+|..+|.. ..... ....+|+.+ |.|.+.+ ..|
T Consensus 91 ltV~~~P~~------------------------------------------~~i~~--~~~~~g~~~-l~C~a~g-~~P~ 124 (210)
T 1gsm_A 91 LLVYAFPNQ------------------------------------------LTVSP--AALVPGDPE-VACTAHK-VTPV 124 (210)
T ss_dssp EEEEBCCSE------------------------------------------EEEES--SSBCTTCCE-EEEEEEE-EBCC
T ss_pred EEEEecCCC------------------------------------------cEEcc--ceEEeCCce-EEEEeCC-CCCC
Confidence 999865432 22111 245678888 9999984 235
Q ss_pred ---CcEEEEEECCEeccCCCceE-EE---------eeCc----EEEEEEcccCcCCcEEEEEEEEcCCeeeEEEE
Q psy2148 1085 ---TMRIDWFFNGRPFATGSRVK-TV---------YDFG----FISLDMDYVYARDSGEYICRATNKWGTAMTKA 1142 (1884)
Q Consensus 1085 ---~~~v~W~k~~~~l~~~~~~~-~~---------~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~ 1142 (1884)
.++|.|||||++|....... .. .... ..+|.+.....+|.+.|+|.|.+.+-.....-
T Consensus 125 ~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~~~ 199 (210)
T 1gsm_A 125 DPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSH 199 (210)
T ss_dssp CTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEEEE
T ss_pred CCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCcccc
Confidence 46999999999996542111 11 0111 23466667777788999999999875554443
No 293
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.63 E-value=1.3e-15 Score=171.33 Aligned_cols=174 Identities=11% Similarity=0.089 Sum_probs=122.7
Q ss_pred cCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--eec-----------------CCCCCeEEEEe--CceeEEEEcc
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI-----------------TSSPDFQIHTF--STKSILIMRQ 1701 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~L~i~~ 1701 (1884)
.+..+.+.+|++++|.|.+.|.| .+.+.|+|+. ..+ ....++.+... ....+|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (225)
T 1op3_H 6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK 85 (225)
T ss_dssp EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence 34567899999999999999877 7899999853 211 01346666543 3467899999
Q ss_pred cccCCCeEEEEEEEeCCc-----e---EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCc
Q psy2148 1702 VFMEDSGVFAVIAENRGG-----K---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL 1772 (1884)
Q Consensus 1702 v~~~DsG~Y~C~a~n~~g-----~---~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p 1772 (1884)
++.+|+|.|.|.+.|..| . ....+.|.|...+. .+|.+........+..|+.++|.|.+.|. |.|
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~------~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p 159 (225)
T 1op3_H 86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST------KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP 159 (225)
T ss_dssp CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC------BCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSC
T ss_pred CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCC------cCCeEEEecccccccCCCcEEEEEEEEeEECCC
Confidence 999999999999999865 2 12346888875221 35666543322235789999999999986 777
Q ss_pred -EEEEEeCCEecCCCCCeEEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEE
Q psy2148 1773 -DVYWLKNGKKIIPDIRYKTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEAR 1825 (1884)
Q Consensus 1773 -~v~W~k~~~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 1825 (1884)
.|.|+|++..+.......+...++ ...|.|.++..+| |.|+|.|.|..+...
T Consensus 160 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 160 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp CEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred eEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence 999999997642110000111121 2368999998888 999999999877544
No 294
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.63 E-value=9.9e-16 Score=175.94 Aligned_cols=181 Identities=19% Similarity=0.240 Sum_probs=127.7
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCC-----CcEEEEeeCC--EEc------------cCCCcEEEEeeCCeEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDP-----SMTVEWFHNG--KAL------------SAGSRIKTINDFGFVI 975 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P-----~~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~ 975 (1884)
..+.+...+.++.+.+|++++|.|.+. +.| .+.|.|+|++ ..+ ....|+.+...++.+.
T Consensus 33 ~~~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 110 (252)
T 3bkj_L 33 SDVLMTQTPLSLPVNLGEQASISCRSS--QSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFT 110 (252)
T ss_dssp -CCCEEEECSEEEECTTSCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE
T ss_pred cccEEEeCCceEEEeCCCcEEEEEEcC--CCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEE
Confidence 346677778899999999999999998 555 5899999964 111 1135777766677789
Q ss_pred EEEccCCCCCCeEEEEEEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCC
Q psy2148 976 LEINDVYLRDSGLYTCKATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054 (1884)
Q Consensus 976 L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1054 (1884)
|.|.+++.+|+|.|+|.|.|..+.. .....|.|.... .+|
T Consensus 111 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------------------~~P 151 (252)
T 3bkj_L 111 LRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD---------------------------------------AAP 151 (252)
T ss_dssp EEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC---------------------------------------BCC
T ss_pred EEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC---------------------------------------cCc
Confidence 9999999999999999999986642 223467775311 234
Q ss_pred ceeeecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceEE--E-eeCc----EEEEEEcccCcCCcEE
Q psy2148 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVKT--V-YDFG----FISLDMDYVYARDSGE 1126 (1884)
Q Consensus 1055 ~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~~--~-~~~~----~~~l~i~~~~~~d~G~ 1126 (1884)
.+...... ..+.+|+.++|.|.+.+ ..|. +.|.|+|+|+.+..+..... . ..++ ...|.|..+..+|+|.
T Consensus 152 ~v~~~~~~-~~~~~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ 229 (252)
T 3bkj_L 152 TVSIFPPS-SEQLTSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS 229 (252)
T ss_dssp EEEEECCC-HHHHHHTEEEEEEEEEE-EBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCE
T ss_pred EEEEeCCC-hhhcCCCcEEEEEEEee-EeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCe
Confidence 44432222 22346889999999984 2454 48999999999875511110 0 1122 2469999999999999
Q ss_pred EEEEEEcCCeee
Q psy2148 1127 YICRATNKWGTA 1138 (1884)
Q Consensus 1127 Y~C~a~n~~G~~ 1138 (1884)
|+|.|.|.....
T Consensus 230 Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 230 YTCEATHKTSTS 241 (252)
T ss_dssp EEEEEECTTCSS
T ss_pred EEEEEEeCCCCC
Confidence 999999986653
No 295
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.63 E-value=3e-15 Score=171.94 Aligned_cols=192 Identities=16% Similarity=0.186 Sum_probs=125.9
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC-----EE---------ccCCCcEEEEeeCCeEEEEEccC
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG-----KA---------LSAGSRIKTINDFGFVILEINDV 981 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g-----~~---------i~~~~~~~~~~~~~~~~L~I~~~ 981 (1884)
.+.+...+.++.+.+|++++|.|.+. +.|.+.|.|+|+. .. .....|+.+...++.++|.|.++
T Consensus 4 ~~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 81 (250)
T 3esu_F 4 DIVLIQSTSSLSASLGDRVTISCRAS--QDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNL 81 (250)
T ss_dssp CCCEECSCSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred ceeEEecCCEEEeeCCCcEEEEEEec--ccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccC
Confidence 35567778889999999999999998 6777899999953 11 12245777766677789999999
Q ss_pred CCCCCeEEEEEEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeec
Q psy2148 982 YLRDSGLYTCKATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQL 1060 (1884)
Q Consensus 982 ~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 1060 (1884)
+.+|+|.|.|.|.|..+.. .....|.|...+.....- +..+.. .....++.+....
T Consensus 82 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~--~~~~~~---------------------~~~~~~~~~~~~~ 138 (250)
T 3esu_F 82 EQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGG--GSGGGG---------------------SGGGGSEVQLQQS 138 (250)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEC-----------------------------------------------CEEC
T ss_pred ChhhCEEEEEEEeeCCCceECCCEEEEEECCCCccccc--cccccc---------------------ccCcccceEEecC
Confidence 9999999999999986653 234567776532110000 000000 0000122222222
Q ss_pred CCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEEC--CEecc-----------------CCCceEEEee--CcEEEEEEccc
Q psy2148 1061 QDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFN--GRPFA-----------------TGSRVKTVYD--FGFISLDMDYV 1119 (1884)
Q Consensus 1061 ~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~--~~~l~-----------------~~~~~~~~~~--~~~~~l~i~~~ 1119 (1884)
. ...+.+|++++|.|.+.+...+.+.+.|||+ +..+. ...++.+..+ ....+|.|.++
T Consensus 139 ~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 217 (250)
T 3esu_F 139 G-PELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSL 217 (250)
T ss_dssp C-CEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred C-ceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCC
Confidence 2 3668899999999999732223789999997 44331 1134444433 44568999999
Q ss_pred CcCCcEEEEEEEEc
Q psy2148 1120 YARDSGEYICRATN 1133 (1884)
Q Consensus 1120 ~~~d~G~Y~C~a~n 1133 (1884)
+.+|+|.|.|.|.|
T Consensus 218 ~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 218 TSVDSAVYFCARSG 231 (250)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred CcccCEEEEEEEec
Confidence 99999999999997
No 296
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.63 E-value=4.8e-15 Score=170.69 Aligned_cols=199 Identities=15% Similarity=0.187 Sum_probs=130.4
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEE---c--------------cCCCcEEEEee--CCeEEEEEccC
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKA---L--------------SAGSRIKTIND--FGFVILEINDV 981 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~---i--------------~~~~~~~~~~~--~~~~~L~I~~~ 981 (1884)
+....+.+|++|+|.|.+.+...+.+.|.|||. +.. + ....|+.+..+ .+..+|.|.++
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (256)
T 3umt_A 9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL 88 (256)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence 455779999999999999843223679999983 221 1 12346666543 35678999999
Q ss_pred CCCCCeEEEEEEEcC----CeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCcee
Q psy2148 982 YLRDSGLYTCKATNK----HGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFT 1057 (1884)
Q Consensus 982 ~~~D~G~Y~C~a~N~----~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1057 (1884)
+.+|+|.|.|.|.|. .+.....+.|.|...+.-... . ........+|.+.
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~-~-------------------------~~~~~~~~~~~~~ 142 (256)
T 3umt_A 89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGG-G-------------------------GSGGGGSTDIQLT 142 (256)
T ss_dssp CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC-----------------------------------------CCCCEE
T ss_pred CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccC-c-------------------------ccCCCCccccEEE
Confidence 999999999999998 444455677888642110000 0 0000000244444
Q ss_pred eecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEEC--CEecc------------CCCceEEEeeCcEEEEEEcccCcCC
Q psy2148 1058 SQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFN--GRPFA------------TGSRVKTVYDFGFISLDMDYVYARD 1123 (1884)
Q Consensus 1058 ~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~--~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~d 1123 (1884)
.... .+.+.+|++++|.|.+. +.|.+.+.|||+ +..+. ...++.........+|.|.+++.+|
T Consensus 143 ~~p~-~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 219 (256)
T 3umt_A 143 QSPS-SLSASLGERVSITCRAS--QDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESED 219 (256)
T ss_dssp EECS-EEEECTTCCEEEEEEES--SCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred cCCC-eEEEECCCCEEEEEEEe--cCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhH
Confidence 4333 36788999999999997 677779999994 22221 1245555556667789999999999
Q ss_pred cEEEEEEEEcCCeeeEE-EEEEEEeecc
Q psy2148 1124 SGEYICRATNKWGTAMT-KAKVICKAKH 1150 (1884)
Q Consensus 1124 ~G~Y~C~a~n~~G~~~~-~~~l~v~~~~ 1150 (1884)
+|.|.|.|.|..+.... ...|.|..++
T Consensus 220 ~G~Y~C~~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 220 FVDYYCLQYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp CSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred CEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence 99999999997654433 3677776543
No 297
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.63 E-value=2.7e-15 Score=175.82 Aligned_cols=191 Identities=16% Similarity=0.173 Sum_probs=134.0
Q ss_pred cCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--eec-----------------CCCCCeEEEEe--CceeEEEEcc
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI-----------------TSSPDFQIHTF--STKSILIMRQ 1701 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~L~i~~ 1701 (1884)
.+..+.+.+|++++|.|.+.|.| .+.+.|+|++ ..+ ....++.+... ....+|+|.+
T Consensus 28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 107 (291)
T 2gki_A 28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS 107 (291)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence 35578899999999999999887 5899999953 111 01245555443 3457899999
Q ss_pred cccCCCeEEEEEEEeCC-c--e--EEEEEEEEEEecc-----cCCC-CCCCCCeEEeccCceEEcCCceEEEEEEEecCC
Q psy2148 1702 VFMEDSGVFAVIAENRG-G--K--AKCSANLVVEEKR-----QGGR-GGVVPPSFLTTISSAVINVGQLARFDAKISATK 1770 (1884)
Q Consensus 1702 v~~~DsG~Y~C~a~n~~-g--~--~~~~~~l~V~~~~-----~~~~-~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p 1770 (1884)
++.+|+|.|.|.+.|.. | . ....+.|.|.... .... ....++.+...+....+.+|++++|.|.+.+.|
T Consensus 108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 187 (291)
T 2gki_A 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL 187 (291)
T ss_dssp CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence 99999999999999874 2 1 1123567776410 0000 000245566667788899999999999999988
Q ss_pred Cc------EEEEEeCC--EecC------------CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEE-EEE
Q psy2148 1771 PL------DVYWLKNG--KKII------------PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARC-EAE 1829 (1884)
Q Consensus 1771 ~p------~v~W~k~~--~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~-~~~ 1829 (1884)
.+ .+.|+|++ ..+. ...|+.+...+...+|+|.+++.+|+|.|+|.|.|....... -..
T Consensus 188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~ 267 (291)
T 2gki_A 188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTK 267 (291)
T ss_dssp EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCEE
Confidence 76 89999963 2111 145777665666779999999999999999999996543332 346
Q ss_pred EEEEec
Q psy2148 1830 LVVQSK 1835 (1884)
Q Consensus 1830 l~V~~~ 1835 (1884)
|.|...
T Consensus 268 l~v~~~ 273 (291)
T 2gki_A 268 LEIKHH 273 (291)
T ss_dssp EEEECC
T ss_pred EEEEee
Confidence 777654
No 298
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.63 E-value=1.7e-15 Score=162.33 Aligned_cols=154 Identities=12% Similarity=0.135 Sum_probs=114.7
Q ss_pred CceeecCCCeEEEEEEEec-cCCCeEEEEeC-CeecC------------CC--CCeEEEEeCceeEEEEcccccCCCeEE
Q psy2148 1647 QPCRAFEQDQARFEVEFDG-DPLPTIKWFRE-DFPIT------------SS--PDFQIHTFSTKSILIMRQVFMEDSGVF 1710 (1884)
Q Consensus 1647 ~~~~v~~G~~~~l~C~~~g-~p~~~i~W~~~-~~~~~------------~~--~~~~~~~~~~~~~L~i~~v~~~DsG~Y 1710 (1884)
..+.+.+|++++|.|.+.+ .+.+.|.|+|+ +..+. .. .++.+ ...+++|.|.+++.+|+|.|
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y 84 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDY 84 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEE
Confidence 4678899999999999865 34789999994 32221 11 23332 24567899999999999999
Q ss_pred EEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEE-ecCCCcEEEEEeCCEecCCCCCe
Q psy2148 1711 AVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKI-SATKPLDVYWLKNGKKIIPDIRY 1789 (1884)
Q Consensus 1711 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~~~~l~~~~~~ 1789 (1884)
.|.+.+.. .....+.|.|.+++ ..|.+.. .+..++|.|.+ .| |.|.|+|+|++..+..
T Consensus 85 ~C~v~~~~-~~~~~~~L~V~~~~-------~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~---- 143 (180)
T 2dru_A 85 YMRMLHET-EDQWKITMEVYEMV-------SKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS---- 143 (180)
T ss_dssp EEEEESSS-EEEEEEEEEEECCC-------CCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE----
T ss_pred EEEEEcCC-eEEEEEEEEEECCC-------CCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC----
Confidence 99998876 66778889998643 3466543 24569999999 66 9999999999998751
Q ss_pred EEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2148 1790 KTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAEL 1830 (1884)
Q Consensus 1790 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 1830 (1884)
..+ .+|.+.. .+|+|.|+|.|.|..|..+.+..+
T Consensus 144 ---~~~--~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 144 ---LRQ--KTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp ---ESS--SEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred ---CCC--CEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 112 2566633 789999999999999988766544
No 299
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.62 E-value=3.5e-15 Score=170.90 Aligned_cols=186 Identities=17% Similarity=0.220 Sum_probs=124.4
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCC-----CcEEEEeeCC--EE---cc---------CCCcEEEEeeCCeEEEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDP-----SMTVEWFHNG--KA---LS---------AGSRIKTINDFGFVILE 977 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P-----~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~L~ 977 (1884)
+.+...+.++.+.+|++|+|.|.+. +.| .+.|.|+|++ .. +. ...|+.+...++...|.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~ 79 (247)
T 1svz_A 2 ILMTQTPLYLPVSLGDQASISCRSS--QTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLK 79 (247)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred CcEEecCCeEEecCCCCEEEEEeCC--CcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEE
Confidence 3466778889999999999999998 555 6899999942 21 11 24577776666777899
Q ss_pred EccCCCCCCeEEEEEEEcCCee-EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCce
Q psy2148 978 INDVYLRDSGLYTCKATNKHGE-ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVF 1056 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1056 (1884)
|.+++.+|+|.|.|.|.|..+. ....+.|.|..++.....+. ....++..
T Consensus 80 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~-----------------------------~~~~~~~~ 130 (247)
T 1svz_A 80 ISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGS-----------------------------GGGGSEVQ 130 (247)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC--------------------------------------------CCE
T ss_pred ECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCcccccccc-----------------------------ccccCceE
Confidence 9999999999999999998664 22346788865432000000 00012222
Q ss_pred eeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECC--Eec------c-----------CCCceEEEe--eCcEEEEE
Q psy2148 1057 TSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG--RPF------A-----------TGSRVKTVY--DFGFISLD 1115 (1884)
Q Consensus 1057 ~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~--~~l------~-----------~~~~~~~~~--~~~~~~l~ 1115 (1884)
...... ..+.+|++++|.|.+.+...|.+.+.|||++ ..+ . ...++.... ......|.
T Consensus 131 ~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 209 (247)
T 1svz_A 131 LQQSGP-ELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQ 209 (247)
T ss_dssp EEECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEE
T ss_pred EeCCCc-eeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEE
Confidence 222233 4588999999999998322235789999963 211 0 123444443 34467899
Q ss_pred EcccCcCCcEEEEEEEEcC
Q psy2148 1116 MDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1116 i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
|.+++.+|+|.|.|.|.|.
T Consensus 210 I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 210 INNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp ECSCCGGGCEEEEEEEEEG
T ss_pred ECCCChhHCEEEEEEEecc
Confidence 9999999999999999995
No 300
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.62 E-value=1.3e-15 Score=174.39 Aligned_cols=184 Identities=15% Similarity=0.230 Sum_probs=127.2
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEee----------------CCEEccCC---CcEEEEee-CCeEEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH----------------NGKALSAG---SRIKTIND-FGFVIL 976 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~----------------~g~~i~~~---~~~~~~~~-~~~~~L 976 (1884)
+.+...+..+.+.+|++++|.|.+. +.|.+.|.|+| ++..+... .|+.+..+ .+.+.|
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L 79 (246)
T 4dzb_B 2 AVVSQHPSWVISKSGTSVKIECRSL--DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL 79 (246)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEES--SSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEE
T ss_pred CccEECCcEEEEeCCCcEEEEeEec--CCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEE
Confidence 3466778889999999999999998 56888999999 44444333 56766543 456789
Q ss_pred EEccCCCCCCeEEEEEEEcCCe----eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCC
Q psy2148 977 EINDVYLRDSGLYTCKATNKHG----EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPN 1052 (1884)
Q Consensus 977 ~I~~~~~~D~G~Y~C~a~N~~G----~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1884)
.|.+++.+|+|.|.|.|.|..+ .....+.|.|...... ..
T Consensus 80 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~------------------------------------~~ 123 (246)
T 4dzb_B 80 TVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKN------------------------------------VF 123 (246)
T ss_dssp EECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGG------------------------------------CB
T ss_pred EECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCc------------------------------------cc
Confidence 9999999999999999998754 2334457777642110 02
Q ss_pred CCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEe-------eCcE----EEEEEcccCc
Q psy2148 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVY-------DFGF----ISLDMDYVYA 1121 (1884)
Q Consensus 1053 ~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~-------~~~~----~~l~i~~~~~ 1121 (1884)
+|.+.........+.+|+.++|.|.+.+...|...|.|+|||..+..+....... .++. ..|.|.....
T Consensus 124 ~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~ 203 (246)
T 4dzb_B 124 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW 203 (246)
T ss_dssp CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHH
T ss_pred CCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHh
Confidence 4444333333344567999999999984221223899999999987643221100 1222 3488888888
Q ss_pred CC-cEEEEEEEEcCCeee
Q psy2148 1122 RD-SGEYICRATNKWGTA 1138 (1884)
Q Consensus 1122 ~d-~G~Y~C~a~n~~G~~ 1138 (1884)
+| .|.|+|.|.|.....
T Consensus 204 ~d~~g~YtC~v~~~~~~~ 221 (246)
T 4dzb_B 204 QNPRNHFRCQVQFYGLSE 221 (246)
T ss_dssp TCTTCEEEEEEEECCBCT
T ss_pred ccCCCeEEEEEEecCCCC
Confidence 88 999999999986543
No 301
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.62 E-value=4.3e-15 Score=172.26 Aligned_cols=181 Identities=15% Similarity=0.174 Sum_probs=127.8
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccC-----CCeEEEEeCC--ee---cC---------CCCCeEEEEeCceeEEEE
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDP-----LPTIKWFRED--FP---IT---------SSPDFQIHTFSTKSILIM 1699 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p-----~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~L~i 1699 (1884)
.+.+...+..+.+.+|++++|.|.+.+.+ .+.+.|+|++ .. +. ...++.+...+...+|+|
T Consensus 15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I 94 (268)
T 1x9q_A 15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI 94 (268)
T ss_dssp CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence 45667777888999999999999999987 5899999853 21 10 235677666566779999
Q ss_pred cccccCCCeEEEEEEEeCCce-EEEEEEEEEEecccCCCCCCCCC--------------eEEeccCceEEcCCceEEEEE
Q psy2148 1700 RQVFMEDSGVFAVIAENRGGK-AKCSANLVVEEKRQGGRGGVVPP--------------SFLTTISSAVINVGQLARFDA 1764 (1884)
Q Consensus 1700 ~~v~~~DsG~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~P--------------~~~~~~~~~~~~~G~~~~l~C 1764 (1884)
.+++.+|+|.|.|.+.|..+. ......|.|...+... .+..|| .+...+....+.+|++++|.|
T Consensus 95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~-~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C 173 (268)
T 1x9q_A 95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDA-KKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC 173 (268)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEC-------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCC-CccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence 999999999999999987553 2234577776532200 000122 134455678899999999999
Q ss_pred EEecCCC--cEEEEEeCC--Eec-------------------CCCCCeEEeec--CCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1765 KISATKP--LDVYWLKNG--KKI-------------------IPDIRYKTLEE--DNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1765 ~~~g~p~--p~v~W~k~~--~~l-------------------~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.+.|.|. +.+.|+|++ ..+ ....|+.+..+ .....|.|.+++.+|+|.|+|.|.|
T Consensus 174 ~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~ 253 (268)
T 1x9q_A 174 VTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGAS 253 (268)
T ss_dssp EEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 9998764 799999862 221 12356666543 2457899999999999999999998
Q ss_pred C
Q psy2148 1820 N 1820 (1884)
Q Consensus 1820 ~ 1820 (1884)
.
T Consensus 254 ~ 254 (268)
T 1x9q_A 254 Y 254 (268)
T ss_dssp T
T ss_pred C
Confidence 5
No 302
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.62 E-value=1.2e-15 Score=169.83 Aligned_cols=177 Identities=15% Similarity=0.165 Sum_probs=119.7
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEEcc----------------CCCcEEEEee--CCeEEEEEccCC
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKALS----------------AGSRIKTIND--FGFVILEINDVY 982 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~i~----------------~~~~~~~~~~--~~~~~L~I~~~~ 982 (1884)
+.++.+.+|++++|.|.+.+...+.+.|.|+|+ |..+. ...|+.+..+ ++...|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 566789999999999999843223478999995 32211 2457776543 346789999999
Q ss_pred CCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCC
Q psy2148 983 LRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQD 1062 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 1062 (1884)
.+|+|.|+|.|.|.. .....+.|.|...+ +.+|.+.....
T Consensus 87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~--------------------------------------~~~P~v~~~~~- 126 (210)
T 3d9a_H 87 TEDTATYYCANWDGD-YWGQGTLVTVSAAK--------------------------------------TTPPSVYPLAP- 126 (210)
T ss_dssp GGGCEEEEEEETTSS-CBCCCEEEEECCCC--------------------------------------CBCCEEEEECC-
T ss_pred cccCEEEEEEEecCc-ccccceEEEeccCC--------------------------------------CCCCEEEEecC-
Confidence 999999999999964 11223567775311 12444433222
Q ss_pred CcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeC---cEEEEEEcccCcCCcEEEEEEEEcCCeee
Q psy2148 1063 NLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDF---GFISLDMDYVYARDSGEYICRATNKWGTA 1138 (1884)
Q Consensus 1063 ~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~ 1138 (1884)
...+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+..........++ ....|.|.....+| |.|+|.|.|..|..
T Consensus 127 ~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 204 (210)
T 3d9a_H 127 GSAAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST 204 (210)
T ss_dssp TTSCCCSSEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred CcccccCCcEEEEEEEee-EecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence 245678999999999983 33777 99999999865311110111111 13468999888877 99999999999976
Q ss_pred EEE
Q psy2148 1139 MTK 1141 (1884)
Q Consensus 1139 ~~~ 1141 (1884)
...
T Consensus 205 ~~~ 207 (210)
T 3d9a_H 205 KVD 207 (210)
T ss_dssp EEE
T ss_pred ccc
Confidence 544
No 303
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.62 E-value=1.4e-16 Score=180.96 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=108.5
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCCe--ec------------CCCCCeEEEEeCceeEEEEccccc
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDF--PI------------TSSPDFQIHTFSTKSILIMRQVFM 1704 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~~--~~------------~~~~~~~~~~~~~~~~L~i~~v~~ 1704 (1884)
.+.+...+..+.+.+|++++|.|.+.|.|.+.|.|+|++. .+ ....++.+...+...+|.|.+++.
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 102 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS 102 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence 3456666788889999999999999999888999998542 11 112344444444556899999999
Q ss_pred CCCeEEEEEEEeCCceE-EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCc-EEEEEeCCE
Q psy2148 1705 EDSGVFAVIAENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLKNGK 1781 (1884)
Q Consensus 1705 ~DsG~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~k~~~ 1781 (1884)
+|+|.|.|.+.|..+.. .....|.|.... .+|.+...+....+..|+.++|.|.+.|. |.+ .|+|+|+|+
T Consensus 103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~ 175 (233)
T 3bqu_C 103 EDVADYYCLQSDNLPYTFGGGTNLEIKRAD-------AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS 175 (233)
T ss_dssp CCCSEEEEEECSSSSCCBCCCCBC---CCC-------BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC--
T ss_pred HHCEEEEEEEecCCceeecCCEEEEEeCCC-------CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCe
Confidence 99999999999876532 223456776422 37877765554445579999999999985 444 799999999
Q ss_pred ecCCCCCeE--Eee-cC----CeEEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1782 KIIPDIRYK--TLE-ED----NLFTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1782 ~l~~~~~~~--~~~-~~----~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
.+..+.... ... .+ ....|.|..+..+|+|.|+|.|.|....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 176 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp ---CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred eCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 886541111 111 11 1237899999999999999999998654
No 304
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.62 E-value=3.5e-15 Score=171.56 Aligned_cols=203 Identities=14% Similarity=0.173 Sum_probs=127.4
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EE-------------ccCCCcEEEE--eeCCeEEEEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KA-------------LSAGSRIKTI--NDFGFVILEI 978 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~-------------i~~~~~~~~~--~~~~~~~L~I 978 (1884)
+..++..+.++.+.+|++|+|.|.+. +.|.+.|.|+|.. .. .....|+.+. ...+..+|.|
T Consensus 3 ~~~v~q~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I 80 (256)
T 3tf7_C 3 AQSVTQPDARVTVSEGASLQLRCKYS--YSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRK 80 (256)
T ss_dssp -CEEECSCSEEEEETTSCEEECCEEE--CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEE
T ss_pred ccEEEecCceEEecCCCeEEEEEEeC--CCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEE
Confidence 45677788899999999999999998 5688899999832 11 1123455553 3345678999
Q ss_pred ccCCCCCCeEEEEEEEcCCee----EEEEEEEEEEeeccccc-ccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCC
Q psy2148 979 NDVYLRDSGLYTCKATNKHGE----ATTSCKLTVKGRQGIDV-EPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNP 1053 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~~G~----~~~~~~l~V~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1884)
.+++.+|+|.|.|.|.|..|. ....+.|.|........ .+... ........+
T Consensus 81 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 137 (256)
T 3tf7_C 81 ASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGG-----------------------GGSGGGGSE 137 (256)
T ss_dssp SSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC--------------------------------------------
T ss_pred CCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCc-----------------------ccCCCCcCc
Confidence 999999999999999998652 22345777764100000 00000 000000123
Q ss_pred CceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECC--Eec---c------------CCCceEEEe-eCcEEEEE
Q psy2148 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG--RPF---A------------TGSRVKTVY-DFGFISLD 1115 (1884)
Q Consensus 1054 p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~--~~l---~------------~~~~~~~~~-~~~~~~l~ 1115 (1884)
|.+..... .+.+.+|++++|.|.+. +. .+.+.|||++ ..+ . ...++.... ......|.
T Consensus 138 ~~v~~~p~-~~~v~~G~~v~L~C~~~--~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~ 213 (256)
T 3tf7_C 138 AAVTQSPR-NKVTVTGENVTLSCRQT--NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLT 213 (256)
T ss_dssp CCEEESCS-EEEEETTCCEEECEEEC--SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEE
T ss_pred cEEEecCC-EEEEeCCCcEEEEEEcC--CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEE
Confidence 44443333 35677999999999997 44 5789999842 111 0 012222221 23345799
Q ss_pred EcccCcCCcEEEEEEEEcCCeeeEEE--EEEEEe
Q psy2148 1116 MDYVYARDSGEYICRATNKWGTAMTK--AKVICK 1147 (1884)
Q Consensus 1116 i~~~~~~d~G~Y~C~a~n~~G~~~~~--~~l~v~ 1147 (1884)
|.+++.+|+|.|.|.|.|..|....- ..|.|.
T Consensus 214 I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~ 247 (256)
T 3tf7_C 214 LESASPSQTSLYFCASSDAPGQLYFGEGSKLTVL 247 (256)
T ss_dssp ESSCCGGGCEEEEEEEEEETTEEEECCCEEEEEE
T ss_pred ECCCCHHHCEEEEEEecCCCCccEECCCeEEEEE
Confidence 99999999999999999987754322 455555
No 305
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.62 E-value=1.4e-15 Score=161.39 Aligned_cols=153 Identities=13% Similarity=0.173 Sum_probs=111.8
Q ss_pred ceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccC------------CCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 925 DLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA------------GSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 925 ~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~------------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
.+.+.+|++|+|.|.+. + |.+.|.|+|++..|.. ..|+.+....+ .|.|.+++.+|+|.|+|.
T Consensus 4 ~v~~~~G~~VtL~c~~~--~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~--sL~I~~v~~~DsG~Y~C~ 78 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSN--V-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG--SLTIYNLTSSDEDEYEME 78 (171)
T ss_dssp EEEEETTCCEEECCCCS--S-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTC--CEEECSCCGGGCEEEEEE
T ss_pred EEEEEcCCCEEEcCCCC--C-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCC--eEEECCCChhhCceEEEE
Confidence 46788999999999884 3 7889999999875421 12333322223 699999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcE
Q psy2148 993 ATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKV 1072 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 1072 (1884)
|.|..| +..+.|.|..++ ..|.+...... .
T Consensus 79 ~~n~~~--~~~~~L~V~~~~---------------------------------------~~p~i~~~~~~---------~ 108 (171)
T 1ccz_A 79 SPNITD--TMKFFLYVLEMV---------------------------------------SKPMIYWECSN---------A 108 (171)
T ss_dssp CTTCCS--CEEEEEEEECCC---------------------------------------CCCEEEEETTT---------T
T ss_pred EeCCCC--cEEEEEEEECcC---------------------------------------CCCEEEEecCC---------c
Confidence 999988 677888887542 12333322111 2
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEE
Q psy2148 1073 HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKVI 1145 (1884)
Q Consensus 1073 ~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~ 1145 (1884)
.|.|.+. +.|.|.|.|+|+|+.+....+. .|.+. ...|+|.|+|.|.|..|..++.+.|.
T Consensus 109 ~L~C~~~--~~p~p~i~W~~~~~~l~~~~~~---------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 109 TLTCEVL--EGTDVELKLYQGKEHLRSLRQK---------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp EEEEECS--SCSSCEEEEEETTEEEEEESSS---------EEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred EEEEEeC--CCCCcEEEEEECCEECcCCcce---------EEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence 7999997 6688999999999998643222 23333 37789999999999999988776553
No 306
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.62 E-value=9.1e-15 Score=168.54 Aligned_cols=202 Identities=19% Similarity=0.216 Sum_probs=130.7
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--E--E-c-------------cCCCcEEEEee--CCeEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--K--A-L-------------SAGSRIKTIND--FGFVI 975 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~--~-i-------------~~~~~~~~~~~--~~~~~ 975 (1884)
++..+..+.+..+.+|++|+|.|.+.+...|.+.|.|+|.. . . + ....|+.+..+ .+.+.
T Consensus 8 ~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (257)
T 3gkz_A 8 KEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVY 87 (257)
T ss_dssp -CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred ccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEE
Confidence 34445666778899999999999999643567899999932 1 1 1 12346666543 45678
Q ss_pred EEEccCCCCCCeEEEEEEEcC----CeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCC
Q psy2148 976 LEINDVYLRDSGLYTCKATNK----HGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKP 1051 (1884)
Q Consensus 976 L~I~~~~~~D~G~Y~C~a~N~----~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1884)
|.|.+++.+|+|.|+|.|.|. .+.....+.|.|..++.....+ .....
T Consensus 88 L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~----------------------------~~~~~ 139 (257)
T 3gkz_A 88 LQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGG----------------------------SGGGG 139 (257)
T ss_dssp EEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC-------------------------------------CTTCC
T ss_pred EEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccc----------------------------cCCCc
Confidence 999999999999999999997 2333445677876532100000 00000
Q ss_pred CCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEEC--CEecc------------CCCceEEEeeCcEEEEEE
Q psy2148 1052 NPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFN--GRPFA------------TGSRVKTVYDFGFISLDM 1116 (1884)
Q Consensus 1052 ~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~--~~~l~------------~~~~~~~~~~~~~~~l~i 1116 (1884)
.+|.+.... ..+.+.+|++++|.|.+. +.|.+ .+.|||+ +..+. ...++.........+|.|
T Consensus 140 ~~~~~~~~p-~~~~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 216 (257)
T 3gkz_A 140 SQIVLTQSP-AIMSASPGEKVTLTCSAS--SSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTI 216 (257)
T ss_dssp CCCCEECSC-SEEEECTTCCEEEEEEES--SCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred cceEEEcCC-ceEEEeCCCcEEEEEEEc--cCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEE
Confidence 122333222 236788999999999997 56666 8999994 33221 024555555556778999
Q ss_pred cccCcCCcEEEEEEEEcCCeeeEEE-EEEEEee
Q psy2148 1117 DYVYARDSGEYICRATNKWGTAMTK-AKVICKA 1148 (1884)
Q Consensus 1117 ~~~~~~d~G~Y~C~a~n~~G~~~~~-~~l~v~~ 1148 (1884)
.+++.+|+|.|.|.|.|........ ..|.|..
T Consensus 217 ~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 217 SSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred CCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 9999999999999999865433322 3555553
No 307
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.62 E-value=1.9e-15 Score=170.20 Aligned_cols=177 Identities=11% Similarity=0.127 Sum_probs=122.1
Q ss_pred CCceeecCCCeEEEEEEEeccCC----CeEEEEeCC--eecC----------------CCCCeEEEEe--CceeEEEEcc
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDPL----PTIKWFRED--FPIT----------------SSPDFQIHTF--STKSILIMRQ 1701 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p~----~~i~W~~~~--~~~~----------------~~~~~~~~~~--~~~~~L~i~~ 1701 (1884)
+..+.+.+|++++|.|.+.+.|. +.+.|+|++ ..+. ...++.+... ....+|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 56678999999999999999875 899999852 2110 1235555443 2357899999
Q ss_pred cccCCCeEEEEEEEeCCc------e---EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CC
Q psy2148 1702 VFMEDSGVFAVIAENRGG------K---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP 1771 (1884)
Q Consensus 1702 v~~~DsG~Y~C~a~n~~g------~---~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~ 1771 (1884)
++.+|+|.|.|.+.|..| . ....+.|.|...+. .+|.+...+....+..|+.++|.|.+.|. |.
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~------~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~ 160 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKT------TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE 160 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCC------BCCEEEEECC-----CCSEEEEEEEEEEEBSS
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCC------CCCEEEEecccccccCCCCEEEEEEEccEeCC
Confidence 999999999999999765 2 11336788874211 46777655444556789999999999985 88
Q ss_pred c-EEEEEeCCEecCCCCCeEEeecC---CeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2148 1772 L-DVYWLKNGKKIIPDIRYKTLEED---NLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAE 1829 (1884)
Q Consensus 1772 p-~v~W~k~~~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 1829 (1884)
| .|.|++++..+.......+...+ ....|.|..+..+| |.|+|.|.|..|.......
T Consensus 161 p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~ 221 (228)
T 3bae_H 161 PVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK 221 (228)
T ss_dssp CCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred CEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence 7 99999998764211111111111 12368999888866 9999999999997654443
No 308
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.62 E-value=2e-15 Score=170.47 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=119.2
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCCCc---EEEEeeCCEEccC----------------CCcEEEE-------eeCCeEE
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDPSM---TVEWFHNGKALSA----------------GSRIKTI-------NDFGFVI 975 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P~~---~v~W~~~g~~i~~----------------~~~~~~~-------~~~~~~~ 975 (1884)
.+.++++..|++|+|.|.+. +.|.+ .|+|+|++..+.. ..+.... ...+..+
T Consensus 7 vp~~V~~~~G~~v~L~C~~~--~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (225)
T 4fmk_A 7 VLPEVRGRLGGTVELPCHLL--PPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDAT 84 (225)
T ss_dssp CCSEEEEETTSCEEECCEEC--SSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCC
T ss_pred eCCEEEEecCCCEEEEEEEE--CCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEE
Confidence 34567889999999999998 44444 4899998754310 1122211 1123347
Q ss_pred EEEccCCCCCCeEEEEEEEcCCeeEEEE-EEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCC
Q psy2148 976 LEINDVYLRDSGLYTCKATNKHGEATTS-CKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054 (1884)
Q Consensus 976 L~I~~~~~~D~G~Y~C~a~N~~G~~~~~-~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1054 (1884)
|.|.+++.+|+|.|+|.|.|..|..... ..+.+..++
T Consensus 85 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 122 (225)
T 4fmk_A 85 LAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQP------------------------------------------ 122 (225)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC------------------------------------------
T ss_pred EEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCC------------------------------------------
Confidence 9999999999999999999987755443 344444322
Q ss_pred ceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCc---EEEEEEcccCcCCcEEEEEEE
Q psy2148 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFG---FISLDMDYVYARDSGEYICRA 1131 (1884)
Q Consensus 1055 ~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a 1131 (1884)
.+..... ......++.+.+.|.+.+ +.|.+.+.|++++..+..........++. .+.|.|..+..+|+|.|+|.|
T Consensus 123 ~~~~~~~-~~~~~~~~~~~~~c~~~~-~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a 200 (225)
T 4fmk_A 123 ENHAEAQ-EVTIGPQSVAVARCVSTG-GRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRV 200 (225)
T ss_dssp EEEEEEC-CBCCSSSCEEEEEEEEEE-EBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEE
T ss_pred ceeeccc-ceeecceeeeeeeeeecC-CCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEE
Confidence 2222222 244556778888887763 77889999999987655332221111111 246999999999999999999
Q ss_pred EcCCeeeEEEEEEEE
Q psy2148 1132 TNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1132 ~n~~G~~~~~~~l~v 1146 (1884)
+|..|....++.+.+
T Consensus 201 ~N~~~~~~~~~~v~l 215 (225)
T 4fmk_A 201 EHESFEEPILLPVTL 215 (225)
T ss_dssp ECTTCSSCEEEEEEC
T ss_pred EcCCCCeEEEEEEEE
Confidence 999987765555544
No 309
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.62 E-value=2.1e-16 Score=177.64 Aligned_cols=176 Identities=12% Similarity=0.100 Sum_probs=127.0
Q ss_pred CCceeecCCCeEEEEEEEec-cCCCe----EEEEeCCeecCC-------------CCCeEEEE-----eCceeEEEEccc
Q psy2148 1646 IQPCRAFEQDQARFEVEFDG-DPLPT----IKWFREDFPITS-------------SPDFQIHT-----FSTKSILIMRQV 1702 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g-~p~~~----i~W~~~~~~~~~-------------~~~~~~~~-----~~~~~~L~i~~v 1702 (1884)
+..+.+.+|+++.|.|.+.+ .+.+. |.|+|++..... ..++.+.. ...+.+|.|.++
T Consensus 6 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v 85 (221)
T 3eow_R 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGL 85 (221)
T ss_dssp CCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCS
T ss_pred CCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccC
Confidence 44567889999999999954 45444 999999752211 23333332 224678999999
Q ss_pred ccCCCeEEEEEEEeCC-ceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEE-EEEEEe-cCCCcEEEEEeC
Q psy2148 1703 FMEDSGVFAVIAENRG-GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLAR-FDAKIS-ATKPLDVYWLKN 1779 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~-l~C~~~-g~p~p~v~W~k~ 1779 (1884)
+.+|+|.|.|.+.|.. |.....+.|.|. .+|.+...+.... ..|+.+. |.|.+. |.|.|.|+|+|+
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~----------~~P~~~~~~~~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~ 154 (221)
T 3eow_R 86 RVEDEGSYTCLFVTFPQGSRSVDIWLRVL----------AKPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHSD 154 (221)
T ss_dssp SCCCCSCBEEEEEESSSCSCEEECCCCCC----------CCCEEEEEEECCC-CCSSSCCEEEEEEESCSSCCCEEEECS
T ss_pred ChHHCeEEEEEEEeCCCCceEEEEEEEEE----------ECCCceeecCCcc-cCCceEEEEEEECCCccCCCeeEEEeC
Confidence 9999999999999976 778888888887 4677765443333 6788884 999988 899999999998
Q ss_pred CEecCCCCCeEEeecC---CeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2148 1780 GKKIIPDIRYKTLEED---NLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1780 ~~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
+..............+ ....|.|.++..+|.|.|+|.|.|..+.....+.|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v~~ 210 (221)
T 3eow_R 155 LGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSL 210 (221)
T ss_dssp SSCCCCCEEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEECC
T ss_pred CCCCCccceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEEEE
Confidence 6543322111001111 2358999999999999999999999988665555543
No 310
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.62 E-value=3.1e-15 Score=171.50 Aligned_cols=183 Identities=11% Similarity=0.116 Sum_probs=126.0
Q ss_pred cCCceeecCCCeEEEEEEEec--cCCCeEEEEeCC--e---ec--------------CCCCCeEEEEe--CceeEEEEcc
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDG--DPLPTIKWFRED--F---PI--------------TSSPDFQIHTF--STKSILIMRQ 1701 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g--~p~~~i~W~~~~--~---~~--------------~~~~~~~~~~~--~~~~~L~i~~ 1701 (1884)
.+..+.+.+|++++|.|.+.+ .+.+.+.|+|.. . .+ ....++.+... .+..+|+|.+
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (253)
T 3liz_H 6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS 85 (253)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 345678999999999999987 346789999842 1 11 11246666544 3456799999
Q ss_pred cccCCCeEEEEEEEeC----CceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EEE
Q psy2148 1702 VFMEDSGVFAVIAENR----GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVY 1775 (1884)
Q Consensus 1702 v~~~DsG~Y~C~a~n~----~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~ 1775 (1884)
++.+|+|.|.|.+.|. .+.......|.|..... .+|.+........+..|+.++|.|.+.| .|.+ .|.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~------~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~ 159 (253)
T 3liz_H 86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKT------TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT 159 (253)
T ss_dssp CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCC------BCCEEEEECC------CCEEEEEEEEEEEBSSCCEEE
T ss_pred CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCC------CCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEE
Confidence 9999999999999886 23334456777763211 4787776555666778999999999998 7777 899
Q ss_pred EEeCCEecCCCCCeEEeecCC---eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1776 WLKNGKKIIPDIRYKTLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1776 W~k~~~~l~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
|++++..+...........+. ...|.|.....+| |.|+|.|.|..+.......|.+..
T Consensus 160 W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~~ 220 (253)
T 3liz_H 160 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPRD 220 (253)
T ss_dssp EGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC-
T ss_pred EEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCcc
Confidence 999997431110000111111 1379999999999 999999999999888777777653
No 311
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.61 E-value=9.9e-15 Score=168.21 Aligned_cols=188 Identities=18% Similarity=0.261 Sum_probs=121.2
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc------------cCCCcEEEEeeCCeEEEEEccCCCCCCeE
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL------------SAGSRIKTINDFGFVILEINDVYLRDSGL 988 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 988 (1884)
+..+.+.+|++|+|.|.+.+...|.+.|.|+|++ ..+ ....|+.+...++.+.|.|.+++.+|+|.
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~ 88 (256)
T 3ux9_B 9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD 88 (256)
T ss_dssp CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence 4467899999999999998432277899999942 111 12357777766777899999999999999
Q ss_pred EEEEEEcCCee---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcC
Q psy2148 989 YTCKATNKHGE---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLD 1065 (1884)
Q Consensus 989 Y~C~a~N~~G~---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 1065 (1884)
|.|.|.|..|. ....+.|.|...+..... .+.+.. ........++.+.. .. ...
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~--~~~~~~-------------------~~~~~~~~~~~~~~-~~-~~~ 145 (256)
T 3ux9_B 89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTIT--SYNVYY-------------------TKLSSSGSEVQLVE-SG-GGL 145 (256)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEC-------------------------------------------CCEEEE-EC-CEE
T ss_pred EEEEEEECCCCceEECCCEEEEEECCCCCcCc--cceeEE-------------------eecCCCccceeEEc-CC-CeE
Confidence 99999997653 334467888764421100 000000 00000001122222 22 245
Q ss_pred cCCCCcEEEEEEEeeCCCC--CcEEEEEEC--CEec------c-----------CCCceEEEee--CcEEEEEEcccCcC
Q psy2148 1066 VPEAGKVHFDCRLEPKSDP--TMRIDWFFN--GRPF------A-----------TGSRVKTVYD--FGFISLDMDYVYAR 1122 (1884)
Q Consensus 1066 v~~g~~~~l~C~v~~~~~p--~~~v~W~k~--~~~l------~-----------~~~~~~~~~~--~~~~~l~i~~~~~~ 1122 (1884)
+.+|++++|.|.+. +.+ .+.+.|||+ +..+ . ...++.+..+ .....|.|.+++.+
T Consensus 146 v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 223 (256)
T 3ux9_B 146 VQPGGSLRLSCAAS--GFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAE 223 (256)
T ss_dssp ECTTCCEEEEEEEE--SSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred EcCCCeEEEEEEEe--CCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChh
Confidence 88999999999997 444 789999996 3322 1 1125555443 34667999999999
Q ss_pred CcEEEEEEEEcCC
Q psy2148 1123 DSGEYICRATNKW 1135 (1884)
Q Consensus 1123 d~G~Y~C~a~n~~ 1135 (1884)
|+|.|.|.|.|..
T Consensus 224 DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 224 DTAVYYCARYIDF 236 (256)
T ss_dssp GCEEEEEEEEETT
T ss_pred hCEEEEEEEEcCC
Confidence 9999999999964
No 312
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.61 E-value=2.8e-15 Score=168.50 Aligned_cols=180 Identities=14% Similarity=0.180 Sum_probs=123.1
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EE---c----------------cCCCcEEEEee--CCeEEEEEc
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KA---L----------------SAGSRIKTIND--FGFVILEIN 979 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~---i----------------~~~~~~~~~~~--~~~~~L~I~ 979 (1884)
+.++.+.+|++++|.|.+.+...+.+.|.|+|++ .. + ....|+.+..+ .+...|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 4567899999999999998422236789999842 21 1 01356766544 346789999
Q ss_pred cCCCCCCeEEEEEEEcCCe-----eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCC
Q psy2148 980 DVYLRDSGLYTCKATNKHG-----EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~G-----~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1054 (1884)
+++.+|+|.|.|.|.|..| .....+.|.|...+ ..+|
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~~P 128 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK--------------------------------------TTPP 128 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC--------------------------------------CBCC
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC--------------------------------------CCCC
Confidence 9999999999999999765 22234577776321 0234
Q ss_pred ceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeCc----EEEEEEcccCcCCcEEEEE
Q psy2148 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDFG----FISLDMDYVYARDSGEYIC 1129 (1884)
Q Consensus 1055 ~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C 1129 (1884)
.+...... ..+.+|+.++|.|.+.+ ..|.+ .|.|+++|+.+... .......++ ...|.|..+..+| |.|+|
T Consensus 129 ~i~~~~~~-~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C 204 (222)
T 1q9r_B 129 SVYPLAPG-SAAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTC 204 (222)
T ss_dssp EEEEECCC-SCCCCSSEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEE
T ss_pred eEEEcccc-ccccCCCcEEEEEEEcc-EECCCCEEEEecCCeEcceE-eccccccCCcEEEEEEEEECchhcCC-CeEEE
Confidence 44332222 34568999999999983 24777 99999999876432 111111222 2368999998889 99999
Q ss_pred EEEcCCeeeEEEEEE
Q psy2148 1130 RATNKWGTAMTKAKV 1144 (1884)
Q Consensus 1130 ~a~n~~G~~~~~~~l 1144 (1884)
.|.|..|.......+
T Consensus 205 ~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 205 NVAHPASSTKVDKKI 219 (222)
T ss_dssp EEEEGGGTEEEEEEC
T ss_pred EEEccCCCCcEEEec
Confidence 999999976655444
No 313
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.61 E-value=1.2e-15 Score=177.37 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=89.3
Q ss_pred ceeEEEEcccccCCCeEEEEEEEeCC----ceEEEEEEEEEEecccCCCCCCCCCeEEe-ccCceEEcCCceEEEEEEEe
Q psy2148 1693 TKSILIMRQVFMEDSGVFAVIAENRG----GKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKIS 1767 (1884)
Q Consensus 1693 ~~~~L~i~~v~~~DsG~Y~C~a~n~~----g~~~~~~~l~V~~~~~~~~~~~~~P~~~~-~~~~~~~~~G~~~~l~C~~~ 1767 (1884)
...+|.|.+++.+|+|.|.|.+.+.. +.......|.|...... ..+|.+.. .+....+..|+.++|.|.+.
T Consensus 99 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~----~~~P~v~~~~~~~~~~~~g~~v~L~C~~~ 174 (270)
T 3qib_D 99 SPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKN----VFPPEVAVFEPSEAEISHTQKATLVCLAT 174 (270)
T ss_dssp SCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTT----CBCCEEEEEECCHHHHHHHSEEEEEEEEE
T ss_pred cEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccccc----ccCCceEEECCCccccccCCceEEEEEec
Confidence 45679999999999999999999642 23334567888752211 13666553 34444556699999999999
Q ss_pred c-CCCc-EEEEEeCCEecCCCCCeEE-------e-ecCC---eEEEEEccCCCCC-CEEEEEEEEeCCeeE
Q psy2148 1768 A-TKPL-DVYWLKNGKKIIPDIRYKT-------L-EEDN---LFTLLIIEAVVED-SGAYECVAMNNAGEA 1824 (1884)
Q Consensus 1768 g-~p~p-~v~W~k~~~~l~~~~~~~~-------~-~~~~---~~~L~i~~~~~~d-~G~Y~C~a~N~~G~~ 1824 (1884)
| .|.| .|+|+|+|..+..+.+... . .++. ...|.|.....+| .|.|+|.|.|.....
T Consensus 175 g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~ 245 (270)
T 3qib_D 175 GFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 245 (270)
T ss_dssp EEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred ceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence 8 7767 8999999999865321110 0 1111 1367888887777 999999999987643
No 314
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.61 E-value=8.5e-15 Score=165.10 Aligned_cols=184 Identities=13% Similarity=0.107 Sum_probs=123.2
Q ss_pred cCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--ee---c-------------CCCCCeEEEEe--CceeEEEEccc
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I-------------TSSPDFQIHTF--STKSILIMRQV 1702 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~---~-------------~~~~~~~~~~~--~~~~~L~i~~v 1702 (1884)
.+..+.+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ....++.+... ....+|.|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (232)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 34567889999999999999875 6889999853 21 1 01346666543 34568999999
Q ss_pred ccCCCeEEEEEEEeCC--c----eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCC-ceEEEEEEEecC-CCc-E
Q psy2148 1703 FMEDSGVFAVIAENRG--G----KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVG-QLARFDAKISAT-KPL-D 1773 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~--g----~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G-~~~~l~C~~~g~-p~p-~ 1773 (1884)
+.+|+|.|.|.+.+.. + .....+.|.|...+. .+|.+........+..| +.++|.|.+.|. |.| .
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~------~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~ 159 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSA------SAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSIT 159 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCC------BCCEEEEEECC------CCSEEEEEEEEEEBSSCCE
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCC------CCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeE
Confidence 9999999999998421 1 222345788875211 45766643333345678 999999999985 877 9
Q ss_pred EEEEe-CCEecCCCCCe-EEeecCC---eEEEEEccCCC--CCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1774 VYWLK-NGKKIIPDIRY-KTLEEDN---LFTLLIIEAVV--EDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1774 v~W~k-~~~~l~~~~~~-~~~~~~~---~~~L~i~~~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
|+|++ ||..+.....+ .....+. ...|.|..... +|.|.|+|.|.|..|.......|.|..
T Consensus 160 v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~ 227 (232)
T 1dn0_B 160 FSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA 227 (232)
T ss_dssp EEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred EEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence 99999 99887541000 0011111 23689988887 889999999999999887777776654
No 315
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.61 E-value=1.9e-15 Score=172.80 Aligned_cols=249 Identities=13% Similarity=0.103 Sum_probs=99.0
Q ss_pred ccCCCceEEEEEEEEEcCCCce-EEEEee--CCEee-ccccceEEEeeCCeEEEEEcCCCCCCCEEEEEEEEcCCeeeEE
Q psy2148 319 NLSEGEIAHFEASLIPVGDQTM-TVEFLY--NGKPI-EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 394 (1884)
Q Consensus 319 ~v~~g~~~~l~c~~~~~g~p~~-~i~W~k--~g~~i-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 394 (1884)
.+.+|++++|.|.. +.+.+ .+.|.- ....+ .. ......|.|.+++.+ |.|+|.+.......+.
T Consensus 10 ~V~~G~sv~l~Cs~---~c~~p~~~~~~t~l~~~~~~~~--------g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~ 76 (291)
T 1mq8_A 10 ILPRGGSVLVTCST---SCDQPKLLGIETPLPKKELLLP--------GNNRKVYELSNVQED--SQPMCYSNCPDGQSTA 76 (291)
T ss_dssp EECTTCEEEEEEEE---CCSSCSEEEEECSSCCCCCCCS--------CSSEEEEEEESCCSC--CCCEEEEECSSCEEEE
T ss_pred EEcCCCeEEEEEeC---CCCCCccceEEecCCCcccccC--------CCceEEEEEEecccC--CeEEEEEEcCCccEEE
Confidence 58899999999996 33333 488853 11111 11 112235788888754 4699999866545556
Q ss_pred EEEEEEeecCCCCCCceEeccCCccCccCCCeEEEEEEEeeCCCCCC--eEEEeeCCEEccccCcEEEEecCCEEEEEEc
Q psy2148 395 SVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL--KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIA 472 (1884)
Q Consensus 395 ~~~l~V~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~--~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~ 472 (1884)
.+.|.|.. +|...........+.+|+.++|.|.+.+ +.|.. +|+|||+++.+..... ..+....+|.+.
T Consensus 77 ~v~l~V~~-----~P~~v~I~~~~~~~~~G~~~~LtC~v~g-~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~ 147 (291)
T 1mq8_A 77 KTFLTVYW-----TPERVELAPLPSWQPVGKNLTLRCQVEG-GAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVL 147 (291)
T ss_dssp ECEEEECB-----CCSCCCBCCCCSBCCSSCCCEEEEEECC-CBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECC
T ss_pred EEEEEEec-----CCCCCEEecCCccccCCCCEEEEEEecC-ccCCCCcEEEEEECCEEeecccC---CCCCceEEEEee
Confidence 67777763 3332222222233789999999999985 45654 6899999988754321 112233467776
Q ss_pred ccCCCCcEEEEEEEEeCcee---------cCCcceEEeecccC-CCCCCCccccCCCCeEEEEEEEeeCCCC-ccEEEEe
Q psy2148 473 YVQSHDSGEYVCRAWNNFIF---------IPPFPIFIFHQIRL-PSPSQDNLDVPEAGKVHFDCRLEPKSDP-TMRIDWF 541 (1884)
Q Consensus 473 ~v~~~d~G~Y~C~a~n~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~v~~g~~~~L~C~~~~~~~p-~~~i~W~ 541 (1884)
....+|.+.|+|+|.|..+. .....+.+...+.. +... ....+.+|+.++|.|.+.+...+ .+.+.|+
T Consensus 148 ~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~-~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~ 226 (291)
T 1mq8_A 148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV-SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLA 226 (291)
T ss_dssp CSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------------
T ss_pred eeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceec-CCcCccCCCeEEEEEEcCCCCCCcccEEEEE
Confidence 66666677999999987552 11111222222111 1111 12357899999999999753222 2479999
Q ss_pred eCCeeecCCCceEEEeeCceEEEEEccc---cc--cccEEEEEEEEcCceeeeeeEEEEE
Q psy2148 542 FNGRPFATGSRVKTVYDFGFISLDMDYV---YA--RDSGEYICRATNKWGTAMTKAKVIC 596 (1884)
Q Consensus 542 ~~~~~l~~~~~~~~~~~~~~~~L~i~~~---~~--~d~G~Y~C~a~n~~g~~~~~~~l~c 596 (1884)
++|+.+..... .+++ .+.+... .+ ++++.|+|.|.|.....+..-+|.+
T Consensus 227 ~~g~~l~~~~~----~~g~--~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v 280 (291)
T 1mq8_A 227 LGDQRLNPTVT----YGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280 (291)
T ss_dssp ------------------------------------------------------------
T ss_pred ECCEecCceee----ecCC--eEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEE
Confidence 99998875321 1222 2222222 34 3467888999875544444444444
No 316
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.61 E-value=4.3e-16 Score=171.28 Aligned_cols=184 Identities=15% Similarity=0.208 Sum_probs=107.0
Q ss_pred ecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEE
Q psy2148 928 LAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLT 1007 (1884)
Q Consensus 928 v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 1007 (1884)
+.+|++++|.|.+ |.+.|+|+|||..|.... ....+|.|.+++.+|+|.|+|.|.|.. + ..+.|.
T Consensus 15 ~~~G~~v~L~C~~-----p~~~i~W~k~g~~l~~~~-------~~~~~L~i~~v~~~DsG~Y~C~~~~~~-s--~~~~v~ 79 (204)
T 1sy6_A 15 YQEDGSVLLTCDA-----EAKNITWFKDGKMIGFLT-------EDKKKWNLGSNAKDPRGMYQCKGSQNK-S--KPLQVY 79 (204)
T ss_dssp CCSSSEEEEEECS-----CSSEEEEEETTEEEEEEE-------SSCCCEEEEEGGGCCEEEEEEESSSSC-C--CCEEEE
T ss_pred ecCCCeEEEEEcC-----CCCEEEEEECCEECCCCC-------CCCCeEEeCCCCcCCCEEEEEEecCCC-C--eeEEEE
Confidence 4689999999986 667999999999885421 112369999999999999999986643 2 224444
Q ss_pred EEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcC-CCCcEEEEEEEeeCCCCCc
Q psy2148 1008 VKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVP-EAGKVHFDCRLEPKSDPTM 1086 (1884)
Q Consensus 1008 V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~-~g~~~~l~C~v~~~~~p~~ 1086 (1884)
|...+.....+.... ... .......... ......+|.+.. . ...+. +|++++|.|. +.|.+
T Consensus 80 v~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~-----~~~~~~~~~~~~-~--p~~v~~~G~~v~L~C~----g~p~p 141 (204)
T 1sy6_A 80 YRMGSADDAKKDAAK-KDD-----AKKDDAKKDG-----SDGNEEMGGITQ-T--PYKVSISGTTVILTCP----QYPGS 141 (204)
T ss_dssp EEC-----------------------------------------------C-C--CCEEEEETTEEEEECS----CCCSS
T ss_pred EEEeccccccccccc-ccc-----cccccccccc-----ccccccccceec-C--CceeeecCCcEEEEcC----CCCCC
Confidence 431000000000000 000 0000000000 000000111111 1 11233 8999999997 56778
Q ss_pred EEEEEECCEeccCCCc-eEEEeeCcEEEEEEccc-CcCCcEEEEEEEEcCCeee-EEEEEEEE
Q psy2148 1087 RIDWFFNGRPFATGSR-VKTVYDFGFISLDMDYV-YARDSGEYICRATNKWGTA-MTKAKVIC 1146 (1884)
Q Consensus 1087 ~v~W~k~~~~l~~~~~-~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~n~~G~~-~~~~~l~v 1146 (1884)
.|.|+|+|..+....+ ..+....+ .|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.+
T Consensus 142 ~i~W~k~~~~l~~~~~~~~~~~~~~--~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 142 EILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp CEEEEETTEEESCCTTCTTEEEETT--EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred ceEEEECCEECCCccCCceEecCCC--EEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 8999999999865321 11222233 7999999 9999999999999999963 44555544
No 317
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.61 E-value=1.6e-15 Score=169.36 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=121.6
Q ss_pred ecCCceeecCCCeEEEEEEEecc--CCCeEEEEeCC--e---ec-------------CCCCCeEEEEeCceeEEEEcccc
Q psy2148 1644 KKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--F---PI-------------TSSPDFQIHTFSTKSILIMRQVF 1703 (1884)
Q Consensus 1644 ~~~~~~~v~~G~~~~l~C~~~g~--p~~~i~W~~~~--~---~~-------------~~~~~~~~~~~~~~~~L~i~~v~ 1703 (1884)
..+..+.+.+|++++|.|.+.+. +.+.+.|+|.. . .+ ....++.+.......+|.|.+++
T Consensus 4 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (215)
T 3nl4_H 4 EESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPT 83 (215)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCC
T ss_pred EcCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCC
Confidence 34566789999999999999874 36899999742 1 11 11346666665666789999999
Q ss_pred cCCCeEEEEEEEeCCce----EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCC--cEEEEE
Q psy2148 1704 MEDSGVFAVIAENRGGK----AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKP--LDVYWL 1777 (1884)
Q Consensus 1704 ~~DsG~Y~C~a~n~~g~----~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~ 1777 (1884)
.+|+|.|.|.+.|..+. ......|.|..... .+|.+...+....+..|+.++|.|.+.|.|+ +.+.|+
T Consensus 84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~------~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~ 157 (215)
T 3nl4_H 84 TEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQP------KAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWN 157 (215)
T ss_dssp GGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCC------BCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEG
T ss_pred cccCEEEEEEEecCCCccceEEcCCEEEEEeCCCc------CCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEe
Confidence 99999999999998653 33445677763221 4677775555556678999999999998543 468899
Q ss_pred eCCEecCCCCCeEEeecCCeEEE-EEccCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2148 1778 KNGKKIIPDIRYKTLEEDNLFTL-LIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1778 k~~~~l~~~~~~~~~~~~~~~~L-~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
|+|..+...........++.+.+ ....+...| |.|+|.|.|..|.......|.+
T Consensus 158 ~~g~~~~~~~~~~~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~~~~~~l~~ 212 (215)
T 3nl4_H 158 SGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPATNTKVDKTVAP 212 (215)
T ss_dssp GGTBCTTEEECCCEECTTSCEEEEEEEEECC----CCEEEEEEGGGTEEEEEECCS
T ss_pred eCCEECCeEecCceECCCCCEEEEEEEEEeccC-CEEEEEEEeCCCCcceEEecCC
Confidence 99986543222112222232222 224566667 9999999999998776666543
No 318
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.61 E-value=1.9e-15 Score=173.44 Aligned_cols=179 Identities=13% Similarity=0.194 Sum_probs=116.0
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCCcE-----EEEeeCCEEccC--------CCcEEEEe----------eCCeEEEE
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPSMT-----VEWFHNGKALSA--------GSRIKTIN----------DFGFVILE 977 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~~~-----v~W~~~g~~i~~--------~~~~~~~~----------~~~~~~L~ 977 (1884)
..+..+.+.+|++++|.|.+. +.|.+. |.|+|++..... +.+..... ..+...|.
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~--g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~ 85 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNIF--YSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLR 85 (248)
T ss_dssp STTSEEEEETTSCEEECCEEE--ESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEE
T ss_pred eCCCCeEEeCCCCEEEeeEEe--cCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEE
Confidence 455677899999999999998 445554 999996432211 01100000 11234599
Q ss_pred EccCCCCCCeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCcee
Q psy2148 978 INDVYLRDSGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFT 1057 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1057 (1884)
|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+..
T Consensus 86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~----------------------------------------- 124 (248)
T 3pv7_A 86 LPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRL----------------------------------------- 124 (248)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEE-----------------------------------------
T ss_pred eCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEE-----------------------------------------
Confidence 999999999999999999999988899999986544321
Q ss_pred eecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCce--------EEEeeCc----EEEEEEcccCcCCc
Q psy2148 1058 SQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRV--------KTVYDFG----FISLDMDYVYARDS 1124 (1884)
Q Consensus 1058 ~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~--------~~~~~~~----~~~l~i~~~~~~d~ 1124 (1884)
... ..+..|+.+.|.|.+.+ +.|.+ .|.|+|+|+.+..+... .....++ ...|.|.....+|.
T Consensus 125 -~~~--~~~~~~~~~~L~C~~~g-~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~ 200 (248)
T 3pv7_A 125 -LLD--QVGMKENEDKYMCESSG-FYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPG 200 (248)
T ss_dssp -ECC----------CEEEEEEEE-EBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTT
T ss_pred -ecC--CccccCCCcEEEEEEcc-EECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCC
Confidence 111 22346788889999983 37887 99999999765432100 1111122 24688999999999
Q ss_pred EEEEEEEEcCCeee--EEEEEEEE
Q psy2148 1125 GEYICRATNKWGTA--MTKAKVIC 1146 (1884)
Q Consensus 1125 G~Y~C~a~n~~G~~--~~~~~l~v 1146 (1884)
|.|+|.|.|..+.. ..++.|.|
T Consensus 201 g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 201 TVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp CEEEEEEECTTCSSCEEEEECC--
T ss_pred CEEEEEEECCCCCCCcEEEEEEEE
Confidence 99999999999864 44555555
No 319
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.61 E-value=1.2e-13 Score=146.14 Aligned_cols=167 Identities=10% Similarity=0.188 Sum_probs=120.4
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCC---CcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDP---SMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P---~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
+.+...|....+..|+.++|+|.+.+ +.| +.+++|+|||.++..... .|.|..+...|+|.|+|.+
T Consensus 3 ~tVs~~P~~~~i~~GdsVTLTatVaG-GkP~pspyTYqWyKDG~~IsGaT~----------tLti~s~t~sdSG~YqCvV 71 (304)
T 3shs_A 3 FTVSIQSNKRCFLAGDGFTLTATVAG-DEPLPSNLTYTWTKDDQPHENNTA----------TLTVADATSENAGSYKVTV 71 (304)
T ss_dssp EEEEEEESCSSBCTTCCEEEEEEEEE-SSSCCCCEEEEEEETTEECSCCSS----------EEEESSCCGGGCEEEEEEE
T ss_pred cEEEeCCCCccccCCCCEEEEEEecC-CCCCCCCceEEEEECCccccCCcc----------eEEeeeccccCCeEEEEEE
Confidence 34455667778899999999999986 777 558999999998764322 5899999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEE
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVH 1073 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 1073 (1884)
+|..|....+..+.|...+. +.+....+..+.+..|..+.
T Consensus 72 TDa~Gcs~tSs~VtVT~~a~----------------------------------------l~i~it~P~s~~vssg~sVt 111 (304)
T 3shs_A 72 QDTDTMTSVESEVFLMEEAE----------------------------------------LIVNITEPQHFYVSSQTDVE 111 (304)
T ss_dssp EETTTCCEEECCCEEECBCC----------------------------------------EEEEESSCSEEEECSSCCEE
T ss_pred EECCCCeeeeeeEEEeccCc----------------------------------------eeEEecCCCceeccCCCeEE
Confidence 99988766665555553221 11111112223445678899
Q ss_pred EEEEE--eeCCCC-----CcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCee--eEEEEEE
Q psy2148 1074 FDCRL--EPKSDP-----TMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGT--AMTKAKV 1144 (1884)
Q Consensus 1074 l~C~v--~~~~~p-----~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~--~~~~~~l 1144 (1884)
|.+.+ .+ |.| ..+++|+|||..|... + .|++......++|.|+|++.|..|. .+.++.+
T Consensus 112 L~aTVt~SG-GtppA~~~~yTYQWyKngt~IsgA-q----------~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i 179 (304)
T 3shs_A 112 LHATVKFSG-GKTPADNYELHYSWSKGEDVIDTT-Q----------DITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179 (304)
T ss_dssp EEEEEEETT-SCCSSTTCCCEEEEEETTEEEESS-S----------EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEE
T ss_pred EEEEEeccC-CCCcccCCCceeEEeeCCeEccCc-c----------ccceeeEEecCCeEEEEEEEcCCCCcccccceEE
Confidence 99988 42 444 5799999999987532 1 4677788899999999999999773 3344444
Q ss_pred EE
Q psy2148 1145 IC 1146 (1884)
Q Consensus 1145 ~v 1146 (1884)
.+
T Consensus 180 ~~ 181 (304)
T 3shs_A 180 ML 181 (304)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 320
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.60 E-value=1.2e-14 Score=167.66 Aligned_cols=191 Identities=14% Similarity=0.216 Sum_probs=126.5
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCC------CcEEEEeeC--CEEc------------cCCCcEEEEeeCCeE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDP------SMTVEWFHN--GKAL------------SAGSRIKTINDFGFV 974 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P------~~~v~W~~~--g~~i------------~~~~~~~~~~~~~~~ 974 (1884)
..+.+...+.++.+.+|++|+|.|.+. +.| .+.|.|+|+ |..+ ....|+.+...++..
T Consensus 4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~--~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~ 81 (264)
T 2gjj_A 4 ADIVLTQTPSSLPVSVGEKVTMTCKSS--QTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDF 81 (264)
T ss_dssp CCCCEEEECSEEEEETTCCEEEEEEES--SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE
T ss_pred cccceEecCCeEEecCCCcEEEEeEcC--CcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEE
Confidence 456778888999999999999999998 555 678999994 3221 124677776666677
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCee-EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCC
Q psy2148 975 ILEINDVYLRDSGLYTCKATNKHGE-ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNP 1053 (1884)
Q Consensus 975 ~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1884)
.|.|.+++.+|+|.|.|.|.|..+. ....+.|.|..++..-....... ......+
T Consensus 82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~------------------------~~~~~~~ 137 (264)
T 2gjj_A 82 TLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGG------------------------GGSGGGG 137 (264)
T ss_dssp EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC------------------------------------------
T ss_pred EEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccc------------------------ccccccc
Confidence 9999999999999999999998653 22346788875431000000000 0000011
Q ss_pred Cce-eeecCCCcCcCCCCcEEEEEEEeeCCCC--CcEEEEEECC--Ee---cc----C----------CCceEEEe--eC
Q psy2148 1054 PVF-TSQLQDNLDVPEAGKVHFDCRLEPKSDP--TMRIDWFFNG--RP---FA----T----------GSRVKTVY--DF 1109 (1884)
Q Consensus 1054 p~~-~~~~~~~~~v~~g~~~~l~C~v~~~~~p--~~~v~W~k~~--~~---l~----~----------~~~~~~~~--~~ 1109 (1884)
|.+ ..... ...+.+|++++|.|.+. +.| .+.|.|||++ .. +. . ..++.+.. ..
T Consensus 138 ~~~~~~~~~-~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 214 (264)
T 2gjj_A 138 SEVQLQQSG-PEVVKTGASVKISCKAS--GYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSS 214 (264)
T ss_dssp -CCEEEECC-CEEECTTCCEEEEEEEE--SSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTT
T ss_pred CcEEEeCCC-CEEEcCCCcEEEEEEEe--CCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCC
Confidence 222 22222 24688999999999998 554 3789999963 21 21 0 23444332 23
Q ss_pred cEEEEEEcccCcCCcEEEEEEEEcC
Q psy2148 1110 GFISLDMDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1110 ~~~~l~i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
....|.|.+++.+|+|.|.|.|.|.
T Consensus 215 ~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 215 STAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CEEEEEECcCCcccCEEEEEEEecC
Confidence 4678999999999999999999995
No 321
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=174.16 Aligned_cols=197 Identities=15% Similarity=0.204 Sum_probs=122.9
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--ee---cC-C-------------CCCeEEE--EeCceeEE
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---IT-S-------------SPDFQIH--TFSTKSIL 1697 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~---~~-~-------------~~~~~~~--~~~~~~~L 1697 (1884)
+|.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|.. .. +. . ..++... ......+|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 456667778889999999999999999999999999831 11 00 0 0011111 12234579
Q ss_pred EEcccccCCCeEEEEEEEeCCc---eEEEEEEEEEEecccCCC-------CCCCCCeEEeccCceEEcCCceEEEEEEEe
Q psy2148 1698 IMRQVFMEDSGVFAVIAENRGG---KAKCSANLVVEEKRQGGR-------GGVVPPSFLTTISSAVINVGQLARFDAKIS 1767 (1884)
Q Consensus 1698 ~i~~v~~~DsG~Y~C~a~n~~g---~~~~~~~l~V~~~~~~~~-------~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~ 1767 (1884)
.|.+++.+|+|.|.|.+.|..+ .......|.|......+. +...+|.+...+....+.+|++++|.|.+.
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~ 161 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE 161 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence 9999999999999999999876 344557788875321100 001146778888889999999999999998
Q ss_pred cC-CCcEEEEEeCCE--ec------------CCCCCeEEe--ecCCeEEEEEccCCCCCCEEEEEEEEeCC---eeE--E
Q psy2148 1768 AT-KPLDVYWLKNGK--KI------------IPDIRYKTL--EEDNLFTLLIIEAVVEDSGAYECVAMNNA---GEA--R 1825 (1884)
Q Consensus 1768 g~-p~p~v~W~k~~~--~l------------~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~---G~~--~ 1825 (1884)
+. |.+.+.|+|++. .+ ....|+.+. .......|+|.+++.+|+|.|+|.|.+.. +.. -
T Consensus 162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~fg 241 (259)
T 3omz_A 162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFG 241 (259)
T ss_dssp CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESCSSTTCCCEEC
T ss_pred CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCccCCCCceEEC
Confidence 85 789999998541 11 012455554 22345689999999999999999998642 111 1
Q ss_pred EEEEEEEEec
Q psy2148 1826 CEAELVVQSK 1835 (1884)
Q Consensus 1826 ~~~~l~V~~~ 1835 (1884)
.-..|.|...
T Consensus 242 ~GT~l~v~~~ 251 (259)
T 3omz_A 242 KGTRVTVEPR 251 (259)
T ss_dssp CCEEEEEEC-
T ss_pred CCCEEEEeeC
Confidence 2246777754
No 322
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.60 E-value=8.4e-16 Score=172.70 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=124.1
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCCCc----EEEEeeCCEEc-------------cCCCcEEEEe-----eCCeEEEEEc
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDPSM----TVEWFHNGKAL-------------SAGSRIKTIN-----DFGFVILEIN 979 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P~~----~v~W~~~g~~i-------------~~~~~~~~~~-----~~~~~~L~I~ 979 (1884)
.+.++.+.+|++++|.|.+.+ +.|.+ .|.|+|++... ....|+.+.. ..+...|.|.
T Consensus 5 ~p~~v~~~~G~~v~L~C~~~~-~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~ 83 (221)
T 3eow_R 5 APTQVPGFLGDSVTLPCYLQV-PNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMF 83 (221)
T ss_dssp CCCCCCCCCSSCCEEECCCCC-CSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECC
T ss_pred CCCcEEEEeCCCEEEEeeecc-CCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEc
Confidence 345678899999999999963 33433 49999986532 1144555554 2234589999
Q ss_pred cCCCCCCeEEEEEEEcCC-eeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceee
Q psy2148 980 DVYLRDSGLYTCKATNKH-GEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTS 1058 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1058 (1884)
+++.+|+|.|+|.|.|.. |..+..+.|.|..+|. +..
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~------------------------------------------~~~ 121 (221)
T 3eow_R 84 GLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQ------------------------------------------NTA 121 (221)
T ss_dssp CSSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCE------------------------------------------EEE
T ss_pred cCChHHCeEEEEEEEeCCCCceEEEEEEEEEECCC------------------------------------------cee
Confidence 999999999999999987 7788888888875333 322
Q ss_pred ecCCCcCcCCCCcE-EEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeC---cEEEEEEcccCcCCcEEEEEEEEcC
Q psy2148 1059 QLQDNLDVPEAGKV-HFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDF---GFISLDMDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1059 ~~~~~~~v~~g~~~-~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
...... .+|+.+ .|.|.+. .+.|.+.|.|++++.............++ ....|.|..+..+|+|.|+|.|.|.
T Consensus 122 ~~~~~~--~~g~~~~~l~C~~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~ 198 (221)
T 3eow_R 122 EVQKVQ--LTGEPVPMARCVST-GGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHE 198 (221)
T ss_dssp EEECCC--CCSSSCCEEEEEEE-SCSSCCCEEEECSSSCCCCCEEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCS
T ss_pred ecCCcc--cCCceEEEEEEECC-CccCCCeeEEEeCCCCCCccceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECC
Confidence 222212 578888 5999986 47888999999986544322111101111 1357999999999999999999999
Q ss_pred CeeeEEEEEEE
Q psy2148 1135 WGTAMTKAKVI 1145 (1884)
Q Consensus 1135 ~G~~~~~~~l~ 1145 (1884)
.+.......|.
T Consensus 199 ~~~~~~~~~v~ 209 (221)
T 3eow_R 199 SFEKPQLLTVS 209 (221)
T ss_dssp CSSSCEEEEEC
T ss_pred CCCCCeEEEEE
Confidence 88765554443
No 323
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.60 E-value=1.5e-15 Score=168.12 Aligned_cols=176 Identities=12% Similarity=0.090 Sum_probs=118.1
Q ss_pred eeeecCCcee-ecCCCeEEEEEEEeccC----CCeEEEEeCCeecCCCCC-eEEEEe----CceeEEEEcccccCCCeEE
Q psy2148 1641 VFTKKIQPCR-AFEQDQARFEVEFDGDP----LPTIKWFREDFPITSSPD-FQIHTF----STKSILIMRQVFMEDSGVF 1710 (1884)
Q Consensus 1641 ~~~~~~~~~~-v~~G~~~~l~C~~~g~p----~~~i~W~~~~~~~~~~~~-~~~~~~----~~~~~L~i~~v~~~DsG~Y 1710 (1884)
.++..+.... +.+|++++|.|.+.|.| .+.|+|+|++..+..... ...... .....|.|.+++.+|+|.|
T Consensus 4 v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 83 (207)
T 2vol_A 4 VFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEF 83 (207)
T ss_dssp EEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCE
T ss_pred EEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEE
Confidence 4455555544 88999999999999985 349999999977643210 000000 1235799999999999999
Q ss_pred EEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCC-cEEEEEeCCEecCCCC-
Q psy2148 1711 AVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKP-LDVYWLKNGKKIIPDI- 1787 (1884)
Q Consensus 1711 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~-p~v~W~k~~~~l~~~~- 1787 (1884)
.|.|.|..|.......+.+... ...+|.+...+.......|+.++|.|.+.| .|. +.|+|+|||..+....
T Consensus 84 ~C~a~~~~~~~~~~~~v~~~~~------~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~ 157 (207)
T 2vol_A 84 KCRVNSAAFPAPIEKTISKTKG------RPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKN 157 (207)
T ss_dssp EEEEECTTCSSCEEEEECCCCC------CCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEE
T ss_pred EEEEEccCCCCceEEEeccCCC------CCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCccc
Confidence 9999999875322222221000 015788876554433446999999999998 455 4899999999885432
Q ss_pred -CeEEeecCC---eEEEEEccCCCCCCEEEEEEEEeCCe
Q psy2148 1788 -RYKTLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAG 1822 (1884)
Q Consensus 1788 -~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G 1822 (1884)
++....++. ...|.|.....+|.|.|+|.|.|...
T Consensus 158 ~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 158 TQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp CCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred CCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence 122222222 12466766666789999999999865
No 324
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.59 E-value=5.1e-15 Score=158.61 Aligned_cols=156 Identities=12% Similarity=0.214 Sum_probs=112.3
Q ss_pred CceeecCCCeEEEEEEEeeCCCCCcEEEEeeC-CEEcc------------CC--CcEEEEeeCCeEEEEEccCCCCCCeE
Q psy2148 924 TDLTLAESTLAHFECRLTPTNDPSMTVEWFHN-GKALS------------AG--SRIKTINDFGFVILEINDVYLRDSGL 988 (1884)
Q Consensus 924 ~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~-g~~i~------------~~--~~~~~~~~~~~~~L~I~~~~~~D~G~ 988 (1884)
..+.+.+|++|+|.|.+.+ +.+.+.|.|+|+ +..|. .. .|+.+.... ..|+|.+++.+|+|.
T Consensus 7 ~~v~v~~G~~vtL~c~~~~-~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~--~sL~I~~v~~~D~G~ 83 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHP-LASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN--GALRIYNVSKEDRGD 83 (180)
T ss_dssp CEEEEETTSCEEECCCSSC-CCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTT--CCEEECSCCGGGCEE
T ss_pred ceEEEEeCCCEEEeCCCCC-CCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCC--ccEEEcCCCHHHCeE
Confidence 4578899999999999853 345779999994 33221 11 455552222 369999999999999
Q ss_pred EEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCC
Q psy2148 989 YTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPE 1068 (1884)
Q Consensus 989 Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 1068 (1884)
|+|.+.+.. ..+..+.|.|..++ ..|.+.. .
T Consensus 84 Y~C~v~~~~-~~~~~~~L~V~~~~---------------------------------------~~P~i~~---------~ 114 (180)
T 2dru_A 84 YYMRMLHET-EDQWKITMEVYEMV---------------------------------------SKPMIYW---------E 114 (180)
T ss_dssp EEEEEESSS-EEEEEEEEEEECCC---------------------------------------CCCEEEE---------E
T ss_pred EEEEEEcCC-eEEEEEEEEEECCC---------------------------------------CCCEEEe---------c
Confidence 999998876 66778888887532 2333332 2
Q ss_pred CCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCeeeEEEEEE
Q psy2148 1069 AGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAKV 1144 (1884)
Q Consensus 1069 g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l 1144 (1884)
++.++|.|.+.. | |.+.|.|+|+|..+.. ..+ .+|.+.. .+|+|.|+|.|.|..|...+...+
T Consensus 115 ~~~v~L~C~~~~-g-p~p~i~W~~~~~~l~~-------~~~--~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 115 CSNATLTCEVLE-G-TDVELKLYQGKEHLRS-------LRQ--KTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp GGGTEEEEECSS-C-TTCEEEEEETTEEEEE-------ESS--SEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred CCCEEEEEEeCC-C-CCCEEEEEECCeECcC-------CCC--CEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 356999999942 5 8999999999998851 111 2455533 789999999999999988766544
No 325
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.59 E-value=6.3e-15 Score=164.51 Aligned_cols=185 Identities=14% Similarity=0.146 Sum_probs=117.8
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EE---c-------------cCCCcEEEEeeCCeEEEEEccCC
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KA---L-------------SAGSRIKTINDFGFVILEINDVY 982 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~---i-------------~~~~~~~~~~~~~~~~L~I~~~~ 982 (1884)
..+.++.+.+|++|+|.|.+.+...+.+.|.|||.. .. + ....|+.+...++.+.|.|.+++
T Consensus 4 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (215)
T 3nl4_H 4 EESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPT 83 (215)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCC
T ss_pred EcCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCC
Confidence 345678899999999999998533456789999832 11 1 12357777666677889999999
Q ss_pred CCCCeEEEEEEEcCCee----EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceee
Q psy2148 983 LRDSGLYTCKATNKHGE----ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTS 1058 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G~----~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1058 (1884)
.+|+|.|.|.+.|..+. ....+.|.|...+ ..+|.+..
T Consensus 84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~~P~i~~ 125 (215)
T 3nl4_H 84 TEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQ--------------------------------------PKAPSVFP 125 (215)
T ss_dssp GGGCEEEEEEEECSSSSCEEEECCCEEEEECSSC--------------------------------------CBCCEEEE
T ss_pred cccCEEEEEEEecCCCccceEEcCCEEEEEeCCC--------------------------------------cCCCEEEE
Confidence 99999999999998653 3334567775211 12444432
Q ss_pred ecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCcEEEE-EEcccCcCCcEEEEEEEEcCCee
Q psy2148 1059 QLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISL-DMDYVYARDSGEYICRATNKWGT 1137 (1884)
Q Consensus 1059 ~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~l-~i~~~~~~d~G~Y~C~a~n~~G~ 1137 (1884)
.... ..+.+|+.++|.|.+.+...+.+.+.|+|+|..+...........++...+ ....+...| |.|+|.|.|..|.
T Consensus 126 ~~~~-~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~ 203 (215)
T 3nl4_H 126 LAPC-CGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPATN 203 (215)
T ss_dssp ECCC-TTCCC--CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEECC----CCEEEEEEGGGT
T ss_pred ecCC-ccccCCCcEEEEEEEeeeeCCCeEEEEeeCCEECCeEecCceECCCCCEEEEEEEEEeccC-CEEEEEEEeCCCC
Confidence 2222 456689999999999853323567889999986542211111222232111 123455667 9999999999987
Q ss_pred eEEEEEEE
Q psy2148 1138 AMTKAKVI 1145 (1884)
Q Consensus 1138 ~~~~~~l~ 1145 (1884)
......|.
T Consensus 204 ~~~~~~l~ 211 (215)
T 3nl4_H 204 TKVDKTVA 211 (215)
T ss_dssp EEEEEECC
T ss_pred cceEEecC
Confidence 76665553
No 326
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.59 E-value=7.7e-16 Score=171.89 Aligned_cols=180 Identities=11% Similarity=0.040 Sum_probs=117.8
Q ss_pred CCCeeeecCCcee--ecCCCeEEEEEEEecc---CC-CeEEEEeCCeecCCCCCeEEEEe-----CceeEEEEcccccCC
Q psy2148 1638 KPPVFTKKIQPCR--AFEQDQARFEVEFDGD---PL-PTIKWFREDFPITSSPDFQIHTF-----STKSILIMRQVFMED 1706 (1884)
Q Consensus 1638 ~~p~~~~~~~~~~--v~~G~~~~l~C~~~g~---p~-~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D 1706 (1884)
.+|.+...+.... +.+|++++|.|.+.|. |. +.|+|+|++..+........... ...+.|.|.++..+|
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 87 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS 87 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence 3455544343333 7899999999999988 43 79999999987654321111000 123579999999999
Q ss_pred CeEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EEEEEeCCEecC
Q psy2148 1707 SGVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLKNGKKII 1784 (1884)
Q Consensus 1707 sG~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~k~~~~l~ 1784 (1884)
+|.|.|.|.|..+.......+.... ....+|.+...+.......|+.++|.|.+.| +|.+ .|+|+|+|..+.
T Consensus 88 ~g~Y~C~~~~~~~~~~~~~~v~~~~------~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~ 161 (218)
T 2rgs_A 88 GKEFKCKVNNKDLPSPIERTISKIK------GLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEE 161 (218)
T ss_dssp TCCEEEEEEETTCSSCEEEEECCCC------CCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred CCeEEEEEECCcCCCcceEEEeecC------CCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEecc
Confidence 9999999999877541222221100 0015788776554433346999999999999 6766 999999999885
Q ss_pred CCCC--eEEeecCCe---EEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1785 PDIR--YKTLEEDNL---FTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1785 ~~~~--~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
.... +....++.. ..|.|.....+|.|.|+|.|.|....
T Consensus 162 ~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 162 NYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp CEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred CceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 4321 111122221 24556555555799999999998754
No 327
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.59 E-value=3.5e-15 Score=165.08 Aligned_cols=178 Identities=14% Similarity=0.239 Sum_probs=113.4
Q ss_pred eeecCCcee-ecCCCeEEEEEEEeeCC-CC-CcEEEEeeCCEEccCCCcE-EEEeeC----CeEEEEEccCCCCCCeEEE
Q psy2148 919 FLTTPTDLT-LAESTLAHFECRLTPTN-DP-SMTVEWFHNGKALSAGSRI-KTINDF----GFVILEINDVYLRDSGLYT 990 (1884)
Q Consensus 919 ~~~~~~~~~-v~~G~~v~l~C~v~~~~-~P-~~~v~W~~~g~~i~~~~~~-~~~~~~----~~~~L~I~~~~~~D~G~Y~ 990 (1884)
++..+.... +.+|++++|.|.+.+.+ .| .+.|+|+|++..+...... .....+ ....|.|.+++.+|+|.|+
T Consensus 5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 84 (207)
T 2vol_A 5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFK 84 (207)
T ss_dssp EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEE
T ss_pred EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEE
Confidence 445556555 89999999999998532 13 4599999999887532100 000011 1247999999999999999
Q ss_pred EEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCC
Q psy2148 991 CKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAG 1070 (1884)
Q Consensus 991 C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 1070 (1884)
|.|.|..|.......+.+. .. ...+|.+........ ..+|+
T Consensus 85 C~a~~~~~~~~~~~~v~~~--~~------------------------------------~~~~P~v~~~~~~~~-~~~g~ 125 (207)
T 2vol_A 85 CRVNSAAFPAPIEKTISKT--KG------------------------------------RPKAPQVYTLPPPKE-QMAKD 125 (207)
T ss_dssp EEEECTTCSSCEEEEECCC--CC------------------------------------CCBCCEEEEECCCTG-GGSSS
T ss_pred EEEEccCCCCceEEEeccC--CC------------------------------------CCcCCeEEEeCCCHH-HhcCC
Confidence 9999998854222222110 00 013455443333222 23699
Q ss_pred cEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceE-EEeeCcE----EEEEEcccCcCCcEEEEEEEEcCCe
Q psy2148 1071 KVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVK-TVYDFGF----ISLDMDYVYARDSGEYICRATNKWG 1136 (1884)
Q Consensus 1071 ~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~-~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~G 1136 (1884)
.+.|.|.+.+ ..|. +.|.|+|||+.+....... ....++. ..|.|.....+|.|.|+|.|.|...
T Consensus 126 ~~~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 126 KVSLTCMITD-FFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp EEEEEEEEEE-EBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred ceEEEEEEee-EECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence 9999999984 2444 5899999999886432111 1122332 3466766666789999999999854
No 328
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.59 E-value=1.7e-14 Score=161.85 Aligned_cols=169 Identities=10% Similarity=0.129 Sum_probs=121.4
Q ss_pred cCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--ee---c---C-------------CCCCeEEEEe--CceeEEEE
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I---T-------------SSPDFQIHTF--STKSILIM 1699 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~---~---~-------------~~~~~~~~~~--~~~~~L~i 1699 (1884)
.+..+.+.+|++++|.|.+.+.+ .+.+.|+|.. .. + . ...++.+... ....+|.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 85 (221)
T 3m8o_H 6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM 85 (221)
T ss_dssp EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence 34567899999999999999844 6899999743 11 0 0 1245655543 34568999
Q ss_pred cccccCCCeEEEEEEEeCC--ceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCC--cEE
Q psy2148 1700 RQVFMEDSGVFAVIAENRG--GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKP--LDV 1774 (1884)
Q Consensus 1700 ~~v~~~DsG~Y~C~a~n~~--g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~--p~v 1774 (1884)
.+++.+|+|.|.|.+.|.. ........|.|..... .+|.+........ ..|+.++|.|.+.| .|. +.|
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~------~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v 158 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASP------TSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSV 158 (221)
T ss_dssp CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCC------BCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEE
T ss_pred CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCC------CCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEE
Confidence 9999999999999999864 2233445677763221 4677663322222 78999999999998 776 489
Q ss_pred EEEeCCEecC----------CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEE
Q psy2148 1775 YWLKNGKKII----------PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEAR 1825 (1884)
Q Consensus 1775 ~W~k~~~~l~----------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 1825 (1884)
.|+|+|..+. .+.+|.+. ..|.|.....+|.|.|+|.|.|..|...
T Consensus 159 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~-----s~L~i~~~~~~d~g~ytC~v~~~~~~~~ 214 (221)
T 3m8o_H 159 TWSESGQGVTARNFPPSQDASGDLYTTS-----SQLTLPATQCLAGKSVTCHVKHYTNPSQ 214 (221)
T ss_dssp EESCCSTTCEEEECCCEECSSSSCEEEE-----EEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred EEEECCEECceEEcCceeeCCCCcEEEE-----EEEEECHHHcCCCCeEEEEEEECCCCce
Confidence 9999998762 22333322 2699999999999999999999987643
No 329
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=173.56 Aligned_cols=192 Identities=15% Similarity=0.149 Sum_probs=132.0
Q ss_pred eeecCCceeecCCCeEEEEEEEecc--CCCeEEEEeCC--eecC-----------------CCCCeEEEEe--CceeEEE
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--FPIT-----------------SSPDFQIHTF--STKSILI 1698 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~i~W~~~~--~~~~-----------------~~~~~~~~~~--~~~~~L~ 1698 (1884)
+.. +..+.+.+|++++|.|.+.+. +.+.+.|+|.. ..+. ...++.+... ....+|.
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (280)
T 3fku_X 4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD 82 (280)
T ss_dssp EEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred EEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence 344 677889999999999999886 56899999843 1110 1135555532 3446899
Q ss_pred EcccccCCCeEEEEEEEeC---------CceEEEEEEEEEEe-cccC----CCCCCCCCeEEeccCceEEcCCceEEEEE
Q psy2148 1699 MRQVFMEDSGVFAVIAENR---------GGKAKCSANLVVEE-KRQG----GRGGVVPPSFLTTISSAVINVGQLARFDA 1764 (1884)
Q Consensus 1699 i~~v~~~DsG~Y~C~a~n~---------~g~~~~~~~l~V~~-~~~~----~~~~~~~P~~~~~~~~~~~~~G~~~~l~C 1764 (1884)
|.+++.+|+|.|.|.+.|. .........|.|.. .... ......+|.+...+. ..+.+|++++|.|
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C 161 (280)
T 3fku_X 83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTC 161 (280)
T ss_dssp ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEE
T ss_pred ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEE
Confidence 9999999999999999986 22233455677764 1000 000012555655555 8899999999999
Q ss_pred EEec-CC-CcEEEEEeC--CEecC------------CCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCee---EE
Q psy2148 1765 KISA-TK-PLDVYWLKN--GKKII------------PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGE---AR 1825 (1884)
Q Consensus 1765 ~~~g-~p-~p~v~W~k~--~~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~---~~ 1825 (1884)
.+.+ .+ .+.+.|+|. +..+. ...|+.+...+..+.|+|.+++.+|+|.|+|.|.|..+. ..
T Consensus 162 ~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g 241 (280)
T 3fku_X 162 TGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFG 241 (280)
T ss_dssp ECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEB
T ss_pred EecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEEC
Confidence 9998 44 478999983 22221 135777777777789999999999999999999998722 22
Q ss_pred EEEEEEEEec
Q psy2148 1826 CEAELVVQSK 1835 (1884)
Q Consensus 1826 ~~~~l~V~~~ 1835 (1884)
....|+|...
T Consensus 242 ~~t~l~V~~~ 251 (280)
T 3fku_X 242 GGTKLTVLGQ 251 (280)
T ss_dssp CCCEEEEC--
T ss_pred CCEEEEECCC
Confidence 3457888654
No 330
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.58 E-value=2.1e-14 Score=160.65 Aligned_cols=173 Identities=14% Similarity=0.197 Sum_probs=120.5
Q ss_pred CCceeecCCCeEEEEEEEeeCCCC--CcEEEEeeCC--EE---cc--------------CCCcEEEEee--CCeEEEEEc
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDP--SMTVEWFHNG--KA---LS--------------AGSRIKTIND--FGFVILEIN 979 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P--~~~v~W~~~g--~~---i~--------------~~~~~~~~~~--~~~~~L~I~ 979 (1884)
+..+.+.+|++|+|.|.+. +.| .+.|.|||.. .. +. ...|+.+..+ .+...|+|.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAAS--GFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMS 84 (220)
T ss_dssp ECCEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEEC
T ss_pred CCCeEecCCCcEEEEEEec--CccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEEC
Confidence 3568899999999999998 444 5789999842 21 10 1357776643 456789999
Q ss_pred cCCCCCCeEEEEEEEcCCee---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCce
Q psy2148 980 DVYLRDSGLYTCKATNKHGE---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVF 1056 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~G~---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1056 (1884)
+++.+|+|.|.|.+.|..+. ....+.|.|...+. .+|.+
T Consensus 85 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~--------------------------------------~~P~v 126 (220)
T 2fbj_H 85 KVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESA--------------------------------------RNPTI 126 (220)
T ss_dssp SCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCC--------------------------------------BCCEE
T ss_pred CCChhhCEEEEEEEeccccccceecCCEEEEecCCCC--------------------------------------CCCEE
Confidence 99999999999999997653 22345777764211 24444
Q ss_pred eeecCCCcCcCCCCcEEEEEEEeeCCCCC--cEEEEEECCEeccC-CCceEEEeeCc----EEEEEEcccCcCCcEEEEE
Q psy2148 1057 TSQLQDNLDVPEAGKVHFDCRLEPKSDPT--MRIDWFFNGRPFAT-GSRVKTVYDFG----FISLDMDYVYARDSGEYIC 1129 (1884)
Q Consensus 1057 ~~~~~~~~~v~~g~~~~l~C~v~~~~~p~--~~v~W~k~~~~l~~-~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C 1129 (1884)
.... ...+.+|+.++|.|.+.+ ..|. +.|.|+++|..+.. ..... ...++ ...|.|.....+|+|.|+|
T Consensus 127 ~~~~--~~~~~~g~~v~L~C~~~g-~~P~~~~~v~W~~~~~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~d~g~ytC 202 (220)
T 2fbj_H 127 YPLT--LPPALSSDPVIIGCLIHD-YFPSGTMNVTWGKSGKDITTVNFPPA-LASGGRYTMSNQLTLPAVECPEGESVKC 202 (220)
T ss_dssp EEEC--CCSSSCCSSEEEEEEEEE-EBSCCCEEEEESCCCSSCEEEECCCE-ECSSSCEEEEEEEEECGGGSCTTCEEEE
T ss_pred EEee--cccccCCCcEEEEEEEEe-EECCCcEEEEEecCCEecceEecCce-ECCCCCEEEEEEEEECHHHcCCCCeEEE
Confidence 3322 245678999999999983 3365 79999999987621 01111 11222 1358999888899999999
Q ss_pred EEEcCCeeeE
Q psy2148 1130 RATNKWGTAM 1139 (1884)
Q Consensus 1130 ~a~n~~G~~~ 1139 (1884)
.|.|..|...
T Consensus 203 ~v~n~~~~~~ 212 (220)
T 2fbj_H 203 SVQHDSNPVQ 212 (220)
T ss_dssp EEEETTSCCE
T ss_pred EEEcCCCceE
Confidence 9999998765
No 331
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.57 E-value=7e-15 Score=170.87 Aligned_cols=180 Identities=17% Similarity=0.235 Sum_probs=119.2
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEE------------ccCC---C-cEEEEe-eCCeEEEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKA------------LSAG---S-RIKTIN-DFGFVILE 977 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~------------i~~~---~-~~~~~~-~~~~~~L~ 977 (1884)
+.++..+..+.+.+|++++|.|.+. + +.+.|.|+|. |.. .... . |+.+.. ..+...|.
T Consensus 28 ~~v~~~p~~v~v~~G~~v~L~C~~~--~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~ 104 (270)
T 3qib_D 28 MKVIQTPRYLVKGQGQKAKMRCIPE--K-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLE 104 (270)
T ss_dssp CCCEEECSEEEEETTSCEEEEEECC--T-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEE
T ss_pred eeEEeCCCeEEEcCCCCEEEEEEec--C-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEE
Confidence 3455667778999999999999986 3 6679999992 211 1111 1 555543 24467899
Q ss_pred EccCCCCCCeEEEEEEEcCC----eeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCC
Q psy2148 978 INDVYLRDSGLYTCKATNKH----GEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNP 1053 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~~----G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1884)
|.+++.+|+|.|.|.+.|.. +.....+.|.|...... ..+
T Consensus 105 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~------------------------------------~~~ 148 (270)
T 3qib_D 105 IQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKN------------------------------------VFP 148 (270)
T ss_dssp ESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTT------------------------------------CBC
T ss_pred ECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccccc------------------------------------ccC
Confidence 99999999999999999743 23334457777642111 124
Q ss_pred CceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEE-------EeeCc----EEEEEEcccCc
Q psy2148 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKT-------VYDFG----FISLDMDYVYA 1121 (1884)
Q Consensus 1054 p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~-------~~~~~----~~~l~i~~~~~ 1121 (1884)
|.+.........+.+|+.++|.|.+.+ ..|.+ .|.|+|||+.+..+..... ...++ ...|.|.....
T Consensus 149 P~v~~~~~~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~ 227 (270)
T 3qib_D 149 PEVAVFEPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW 227 (270)
T ss_dssp CEEEEEECCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHH
T ss_pred CceEEECCCccccccCCceEEEEEecc-eeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHh
Confidence 444333222234556999999999984 25655 8999999999976422110 00122 24578888777
Q ss_pred CC-cEEEEEEEEcCCe
Q psy2148 1122 RD-SGEYICRATNKWG 1136 (1884)
Q Consensus 1122 ~d-~G~Y~C~a~n~~G 1136 (1884)
+| .|.|+|.|.|...
T Consensus 228 ~d~~g~YtC~v~~~~l 243 (270)
T 3qib_D 228 QNPRNHFRCQVQFYGL 243 (270)
T ss_dssp HSTTCEEEEEEEECCB
T ss_pred ccCCCeEEEEEEecCC
Confidence 77 9999999998754
No 332
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.57 E-value=2.7e-14 Score=163.29 Aligned_cols=180 Identities=16% Similarity=0.195 Sum_probs=125.6
Q ss_pred eeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--ee--------------cCCCCCeEEEE-eCceeEEEEccccc
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP--------------ITSSPDFQIHT-FSTKSILIMRQVFM 1704 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~--------------~~~~~~~~~~~-~~~~~~L~i~~v~~ 1704 (1884)
+...+..+.+.+|+++.|.|.+.+.|.+.+.|+|.. .. .....++.+.. .....+|.|.+++.
T Consensus 4 v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~ 83 (245)
T 3nfj_J 4 IHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLL 83 (245)
T ss_dssp EEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCCG
T ss_pred eeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCCh
Confidence 455677889999999999999999999999999922 10 01124555554 24567899999999
Q ss_pred CCCeEEEEEEEeCCc------eEEEEEEEEEEecccCCCCCCCCCeEEe-ccCceEEcCCceEEEEEEEec-CCCc-EEE
Q psy2148 1705 EDSGVFAVIAENRGG------KAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISA-TKPL-DVY 1775 (1884)
Q Consensus 1705 ~DsG~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~~~~~~~P~~~~-~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~ 1775 (1884)
+|+|.|.|.+.|..| .......|.|...... ..+|.+.. .+....+..|+.++|.|.+.| .|.+ .|+
T Consensus 84 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~----~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~ 159 (245)
T 3nfj_J 84 SDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNK----VFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELS 159 (245)
T ss_dssp GGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGG----CBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred hhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCC----CCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEE
Confidence 999999999999332 3334567888752111 13666654 333444556999999999999 4544 799
Q ss_pred EEeCCEecCCCCCeEEe--------ecCC---eEEEEEccCCCCC-CEEEEEEEEeCCeeEE
Q psy2148 1776 WLKNGKKIIPDIRYKTL--------EEDN---LFTLLIIEAVVED-SGAYECVAMNNAGEAR 1825 (1884)
Q Consensus 1776 W~k~~~~l~~~~~~~~~--------~~~~---~~~L~i~~~~~~d-~G~Y~C~a~N~~G~~~ 1825 (1884)
|+|+|..+......... .++. ...|.|.....+| .|.|+|.|.|..+...
T Consensus 160 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~~~ 221 (245)
T 3nfj_J 160 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp EEETTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCSS
T ss_pred EEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCCCc
Confidence 99999998654221100 1111 1378888887777 7799999999876543
No 333
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.57 E-value=2.7e-14 Score=140.10 Aligned_cols=103 Identities=22% Similarity=0.346 Sum_probs=94.9
Q ss_pred CCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1740 VVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1740 ~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
..||.|...+....+.+|+.++|.|.+.|.|.|.|+|+|++..+..+.++.+........|.|.++..+|+|.|+|.|.|
T Consensus 5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 84 (114)
T 2cqv_A 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 84 (114)
T ss_dssp CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence 36899999999999999999999999999999999999999999888899888777778999999999999999999999
Q ss_pred CCeeEEEEEEEEEEecCCCCCCC
Q psy2148 1820 NAGEARCEAELVVQSKKAPGKQA 1842 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~~~~~~~~~ 1842 (1884)
..|..+..+.|.|.++|.+|..|
T Consensus 85 ~~g~~~~~~~l~V~~~p~~P~~p 107 (114)
T 2cqv_A 85 KLGSRQAQVNLTVVDKPDPPAGT 107 (114)
T ss_dssp SSCEEECCEEEEEECSCSCCCCC
T ss_pred CCCcEEEEEEEEEECCCCCCCCC
Confidence 99999999999999987766544
No 334
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.57 E-value=2.4e-14 Score=160.50 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=120.2
Q ss_pred CCceeecCCCeEEEEEEEeeCCCC--CcEEEEeeCC--EE---c---c-------------CCCcEEEEee--CCeEEEE
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDP--SMTVEWFHNG--KA---L---S-------------AGSRIKTIND--FGFVILE 977 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P--~~~v~W~~~g--~~---i---~-------------~~~~~~~~~~--~~~~~L~ 977 (1884)
+..+.+.+|++++|.|.+. +.| .+.|.|+|++ .. + . ...|+.+..+ .+...|.
T Consensus 7 p~~~~~~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 84 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVAS--GFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQ 84 (220)
T ss_dssp ECCEEECTTCCEEEEEEEE--SSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred cCCEEEcCCCeEEEEEEEc--CCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEE
Confidence 5668899999999999998 444 6799999953 21 1 0 0357766543 3566899
Q ss_pred EccCCCCCCeEEEEEEEcCCeeE-E--EEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCC
Q psy2148 978 INDVYLRDSGLYTCKATNKHGEA-T--TSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~~G~~-~--~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1054 (1884)
|.+++.+|+|.|.|.|.|..|.. . ..+.|.|...+ +.+|
T Consensus 85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~~P 126 (220)
T 1pz5_B 85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT--------------------------------------TTAP 126 (220)
T ss_dssp ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--------------------------------------CBCC
T ss_pred EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC--------------------------------------CCCC
Confidence 99999999999999999986532 1 34677775311 1234
Q ss_pred ceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEecc--CCCceEEEeeC---cEEEEEEcccCcCCcEEEE
Q psy2148 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFA--TGSRVKTVYDF---GFISLDMDYVYARDSGEYI 1128 (1884)
Q Consensus 1055 ~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~--~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~ 1128 (1884)
.+...... ..+.+|+.++|.|.+.+ ..|.+ .|.|++++..+. ...... ..+ ....|.|.....+| |.|+
T Consensus 127 ~i~~~~~~-~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~~-g~Y~ 201 (220)
T 1pz5_B 127 SVYPLVPG-CSDTSGSSVTLGCLVKG-YFPEPVTVKWNYGALSSGVRTVSSVL--QSGFYSLSSLVTVPSSTWPS-QTVI 201 (220)
T ss_dssp EEEEECCC-SCCSCSSSEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEECCCEE--ETTEEEEEEEEEECGGGTTT-SCCE
T ss_pred eEEEcccc-cccCCCCcEEEEEEEEE-EeCCCeEEEEecCCcccceEEcCCcc--cCCeEEEEEEEEEcchhcCC-ceEE
Confidence 44332222 34678999999999983 33777 999999987421 000000 011 13468999888766 9999
Q ss_pred EEEEcCCeeeEEEEE
Q psy2148 1129 CRATNKWGTAMTKAK 1143 (1884)
Q Consensus 1129 C~a~n~~G~~~~~~~ 1143 (1884)
|.|.|..|..+.++.
T Consensus 202 C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 202 CNVAHPASKVDLIKE 216 (220)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEEECCccEeeeec
Confidence 999999997665543
No 335
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.57 E-value=1.8e-14 Score=164.91 Aligned_cols=179 Identities=9% Similarity=0.065 Sum_probs=123.9
Q ss_pred eecCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--eec------C-----------CCCCeEEEEe--CceeEEEE
Q psy2148 1643 TKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPI------T-----------SSPDFQIHTF--STKSILIM 1699 (1884)
Q Consensus 1643 ~~~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~~------~-----------~~~~~~~~~~--~~~~~L~i 1699 (1884)
+..+..+.+.+|++++|.|.+.+.| .+.+.|+|+. ..+ . ...++.+... ....+|.|
T Consensus 10 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 89 (261)
T 2xqy_G 10 LQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQL 89 (261)
T ss_dssp EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred EECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEE
Confidence 3445677899999999999999887 6899999863 211 0 1245665543 34578999
Q ss_pred cccccCCCeEEEEEEEeCCce---EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EE
Q psy2148 1700 RQVFMEDSGVFAVIAENRGGK---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DV 1774 (1884)
Q Consensus 1700 ~~v~~~DsG~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v 1774 (1884)
.+++.+|+|.|.|.+.|..+. ....+.|.|...+. .+|.+........+..|+.++|.|.+.| .|.| .|
T Consensus 90 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~------~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v 163 (261)
T 2xqy_G 90 SSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKT------TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTL 163 (261)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCC------BCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEE
T ss_pred cCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCC------CCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEE
Confidence 999999999999999986531 12345788874221 3576665443345678999999999998 4776 99
Q ss_pred EEEeCCEecCCCCCeEEeecC---CeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEE
Q psy2148 1775 YWLKNGKKIIPDIRYKTLEED---NLFTLLIIEAVVEDSGAYECVAMNNAGEARCEA 1828 (1884)
Q Consensus 1775 ~W~k~~~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~ 1828 (1884)
.|++++..+.......+...+ ....|.|..+..+| |.|+|.|.|.........
T Consensus 164 ~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~ 219 (261)
T 2xqy_G 164 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDK 219 (261)
T ss_dssp EEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred EEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEE
Confidence 999999865321110111111 12479999988888 999999999877644333
No 336
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.57 E-value=1.3e-14 Score=163.01 Aligned_cols=186 Identities=10% Similarity=0.119 Sum_probs=119.8
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCC--CcEEEEeeCC--EE---c---c-----------CCCcEEEEee--CCeEEEEE
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDP--SMTVEWFHNG--KA---L---S-----------AGSRIKTIND--FGFVILEI 978 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P--~~~v~W~~~g--~~---i---~-----------~~~~~~~~~~--~~~~~L~I 978 (1884)
.+..+.+.+|++|+|.|.+. +.| .+.|.|||++ .. + . ...|+.+..+ .+...|.|
T Consensus 6 qp~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (227)
T 1mju_H 6 QPGAELVKPGASVKLSCKAS--GYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL 83 (227)
T ss_dssp CCSEEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred CCCCeEEcCCCCEEEEEEec--CCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEE
Confidence 35677899999999999998 444 6789999953 22 1 1 1357766543 35678999
Q ss_pred ccCCCCCCeEEEEEEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCcee
Q psy2148 979 NDVYLRDSGLYTCKATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFT 1057 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1057 (1884)
.+++.+|+|.|.|.|.|..+.. ...+.|.|...+ +.+|.+.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~--------------------------------------~~~P~v~ 125 (227)
T 1mju_H 84 SSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK--------------------------------------TTAPSVY 125 (227)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSC--------------------------------------CBCCEEE
T ss_pred CCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCC--------------------------------------CCCCEEE
Confidence 9999999999999999974321 233577776311 0233333
Q ss_pred eecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeC---cEEEEEEcccCcCCcEEEEEEEEc
Q psy2148 1058 SQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDF---GFISLDMDYVYARDSGEYICRATN 1133 (1884)
Q Consensus 1058 ~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n 1133 (1884)
..... ..+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+...........+ ....|.|.....+| |.|+|.|.|
T Consensus 126 ~~~~~-~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n 202 (227)
T 1mju_H 126 PLAPV-CGDTSGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAH 202 (227)
T ss_dssp EECCC-C------CEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEE
T ss_pred EecCC-ccccCCCcEEEEEEeec-EeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEE
Confidence 22111 34568999999999983 23665 99999999875311000011111 12469999988888 999999999
Q ss_pred CCeeeEEEEEEEEeecc
Q psy2148 1134 KWGTAMTKAKVICKAKH 1150 (1884)
Q Consensus 1134 ~~G~~~~~~~l~v~~~~ 1150 (1884)
..+.......+.+..+|
T Consensus 203 ~~~~~~~~~~~~~~~~p 219 (227)
T 1mju_H 203 PASSTKVDKKIEPRGPT 219 (227)
T ss_dssp GGGTEEEEEECCCCCC-
T ss_pred CCCCcceEEEeCCCCCC
Confidence 88776666666555443
No 337
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.56 E-value=1.4e-14 Score=162.71 Aligned_cols=174 Identities=14% Similarity=0.218 Sum_probs=117.9
Q ss_pred CCceeecCCCeEEEEEEEeeCCCC--CcEEEEeeCC--EEc-----------------cCCCcEEEEee--CCeEEEEEc
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDP--SMTVEWFHNG--KAL-----------------SAGSRIKTIND--FGFVILEIN 979 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P--~~~v~W~~~g--~~i-----------------~~~~~~~~~~~--~~~~~L~I~ 979 (1884)
+..+.+.+|++|+|.|.+. +.| .+.|.|+|+. ..+ ....|+.+..+ .+...|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVS--NFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMH 84 (225)
T ss_dssp ECCEEEETTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred CCCeEecCCCCEEEEEEec--CcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEEC
Confidence 4567899999999999998 444 6789999852 211 12357766654 356789999
Q ss_pred cCCCCCCeEEEEEEEcCCe-----e---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCC
Q psy2148 980 DVYLRDSGLYTCKATNKHG-----E---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKP 1051 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~G-----~---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1051 (1884)
+++.+|+|.|.|.|.|..| . ....+.|.|...+.
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~-------------------------------------- 126 (225)
T 1op3_H 85 KMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST-------------------------------------- 126 (225)
T ss_dssp SCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC--------------------------------------
T ss_pred CCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCC--------------------------------------
Confidence 9999999999999999875 2 12346788874210
Q ss_pred CCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeCc----EEEEEEcccCcCCcEE
Q psy2148 1052 NPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDFG----FISLDMDYVYARDSGE 1126 (1884)
Q Consensus 1052 ~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~ 1126 (1884)
.+|.+...... ..+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+...........++ ...|.|.....+| |.
T Consensus 127 ~~P~v~~~~~~-~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ 203 (225)
T 1op3_H 127 KGPSVFPLAPS-SKSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QT 203 (225)
T ss_dssp BCCEEEEECCC-TTCCCCCEEEEEEEEEE-EBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CC
T ss_pred cCCeEEEeccc-ccccCCCcEEEEEEEEe-EECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-Cc
Confidence 23433222111 23568999999999983 33665 999999997643110000111222 2468999988888 99
Q ss_pred EEEEEEcCCeeeE
Q psy2148 1127 YICRATNKWGTAM 1139 (1884)
Q Consensus 1127 Y~C~a~n~~G~~~ 1139 (1884)
|+|.|.|..+...
T Consensus 204 Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 204 YICNVNHKPSNTK 216 (225)
T ss_dssp CCEEEEEGGGTEE
T ss_pred EEEEEEcCCCCcc
Confidence 9999999876543
No 338
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.56 E-value=8.3e-14 Score=156.09 Aligned_cols=179 Identities=13% Similarity=0.217 Sum_probs=119.7
Q ss_pred CceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EE---c--------------cCCCcEEEEee--CCeEEEEEccCC
Q psy2148 924 TDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KA---L--------------SAGSRIKTIND--FGFVILEINDVY 982 (1884)
Q Consensus 924 ~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~---i--------------~~~~~~~~~~~--~~~~~L~I~~~~ 982 (1884)
.++.+.+|++|+|.|.+.+.....+.|.|||+. .. + ....|+.+..+ .+...|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (223)
T 1dee_B 8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR 87 (223)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence 578899999999999998422124689999843 11 1 01357776554 346789999999
Q ss_pred CCCCeEEEEEEEcCCe----e--EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCce
Q psy2148 983 LRDSGLYTCKATNKHG----E--ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVF 1056 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G----~--~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1056 (1884)
.+|+|.|.|.+.|..| . ....+.|+|...+ +.+|.+
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~--------------------------------------~~~P~i 129 (223)
T 1dee_B 88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS--------------------------------------ASAPTL 129 (223)
T ss_dssp GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC--------------------------------------CBCCEE
T ss_pred HHHCEEEEEEEeccccCcccceeecCcEEEEEccCC--------------------------------------CCCCEE
Confidence 9999999999999764 1 1223577776311 023443
Q ss_pred eeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEE-CCEeccCCCceEEEeeCc----EEEEEEcccCc--CCcEEEE
Q psy2148 1057 TSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFF-NGRPFATGSRVKTVYDFG----FISLDMDYVYA--RDSGEYI 1128 (1884)
Q Consensus 1057 ~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k-~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~--~d~G~Y~ 1128 (1884)
.... ....+.+|+.++|.|.+.+ ..|.+ .|.|++ ||+.+...........++ ...|.|..... +|.|.|+
T Consensus 130 ~~~~-~~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~ 207 (223)
T 1dee_B 130 FPLV-SCENSNPSSTVAVGCLAQD-FLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVV 207 (223)
T ss_dssp EEEE-CTTCCCSSSEEEEEEEEEE-EBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEE
T ss_pred EEec-CCcccCCCCcEEEEEEEEE-EeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEE
Confidence 3211 1234578999999999983 33666 999999 998875400000000112 24588877765 8899999
Q ss_pred EEEEcCCeeeEEEE
Q psy2148 1129 CRATNKWGTAMTKA 1142 (1884)
Q Consensus 1129 C~a~n~~G~~~~~~ 1142 (1884)
|.|.|..|......
T Consensus 208 C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 208 CKVQHPNGNKEKDV 221 (223)
T ss_dssp EEEECTTCCEEEEE
T ss_pred EEEEeCCCCCcccc
Confidence 99999999776544
No 339
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.56 E-value=3.4e-15 Score=166.60 Aligned_cols=183 Identities=15% Similarity=0.222 Sum_probs=115.2
Q ss_pred CCCeeeecCCcee--ecCCCeEEEEEEEeeCC--CCCcEEEEeeCCEEccCCCcEEE-EeeC----CeEEEEEccCCCCC
Q psy2148 915 KAPEFLTTPTDLT--LAESTLAHFECRLTPTN--DPSMTVEWFHNGKALSAGSRIKT-INDF----GFVILEINDVYLRD 985 (1884)
Q Consensus 915 ~~p~~~~~~~~~~--v~~G~~v~l~C~v~~~~--~P~~~v~W~~~g~~i~~~~~~~~-~~~~----~~~~L~I~~~~~~D 985 (1884)
.+|.+...+.... +.+|++++|.|.+.+.. .+.+.|+|+|+|..+........ ...+ ....|.|.+++.+|
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 87 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS 87 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence 4677665555544 89999999999998532 23479999999988764321111 1111 13479999999999
Q ss_pred CeEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcC
Q psy2148 986 SGLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLD 1065 (1884)
Q Consensus 986 ~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 1065 (1884)
+|.|+|.|.|..+.......+.. ... ...+|.+........
T Consensus 88 ~g~Y~C~~~~~~~~~~~~~~v~~--~~~------------------------------------~~~~P~v~~~~~~~~- 128 (218)
T 2rgs_A 88 GKEFKCKVNNKDLPSPIERTISK--IKG------------------------------------LVRAPQVYILPPPAE- 128 (218)
T ss_dssp TCCEEEEEEETTCSSCEEEEECC--CCC------------------------------------CCBCCEEEEECCCGG-
T ss_pred CCeEEEEEECCcCCCcceEEEee--cCC------------------------------------CCCCCEEEEECCChH-
Confidence 99999999998775311111110 000 013455543333322
Q ss_pred cCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEE-EeeCcE----EEEEEcccCcCCcEEEEEEEEcCCee
Q psy2148 1066 VPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKT-VYDFGF----ISLDMDYVYARDSGEYICRATNKWGT 1137 (1884)
Q Consensus 1066 v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~-~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~G~ 1137 (1884)
..+|+.++|.|.+.+ ..|.+ .|.|+|||..+........ ...++. ..|.|.....+|.|.|+|.|.|....
T Consensus 129 ~~~g~~~~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 129 QLSRKDVSLTCLVVG-FNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp GTTSSEEEEEEEEEE-EBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred HhcCCceEEEEEEEe-eeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 235999999999983 25654 9999999998854321111 122332 23556555555799999999998653
No 340
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.56 E-value=1.5e-14 Score=164.90 Aligned_cols=178 Identities=15% Similarity=0.176 Sum_probs=125.4
Q ss_pred eeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeC--------------Ceec---CCCCCeEEEEe-CceeEEEEccc
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--------------DFPI---TSSPDFQIHTF-STKSILIMRQV 1702 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~--------------~~~~---~~~~~~~~~~~-~~~~~L~i~~v 1702 (1884)
.++..+..+.+.+|+++.|.|.+.+ +.+.+.|+|. +... ....++.+... ....+|.|.++
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v 82 (240)
T 3q5y_A 4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL 82 (240)
T ss_dssp CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence 4556677889999999999999986 8889999992 2111 11245655542 34568999999
Q ss_pred ccCCCeEEEEEEEeC---CceEEEEEEEEEEecccCCCCCCCCCeEEe-ccCceEEcCCceEEEEEEEec-CCCc-EEEE
Q psy2148 1703 FMEDSGVFAVIAENR---GGKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISA-TKPL-DVYW 1776 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~-~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W 1776 (1884)
+.+|+|.|.|.+.+. .........|.|...... ..+|.+.. .+....+..|+.++|.|.+.| .|.| .|.|
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~----~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W 158 (240)
T 3q5y_A 83 ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRN----VTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSW 158 (240)
T ss_dssp CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGG----CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccC----CCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEE
Confidence 999999999999843 223344567777742110 14666653 444555667999999999998 6766 7999
Q ss_pred EeCCEecCCCCCeE---EeecCCeE----EEEEccCCCCC-CEEEEEEEEeCCee
Q psy2148 1777 LKNGKKIIPDIRYK---TLEEDNLF----TLLIIEAVVED-SGAYECVAMNNAGE 1823 (1884)
Q Consensus 1777 ~k~~~~l~~~~~~~---~~~~~~~~----~L~i~~~~~~d-~G~Y~C~a~N~~G~ 1823 (1884)
+|+|..+....+.. ....++.+ .|.|.....+| .|.|+|.|.|....
T Consensus 159 ~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~ 213 (240)
T 3q5y_A 159 WVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS 213 (240)
T ss_dssp EETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 99999986543221 12222322 48999998888 77999999998764
No 341
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.56 E-value=8.2e-16 Score=174.55 Aligned_cols=178 Identities=15% Similarity=0.237 Sum_probs=103.0
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc------------cCCCcEEEEeeCCeEEEEEccC
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL------------SAGSRIKTINDFGFVILEINDV 981 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~ 981 (1884)
.+.+...+.++.+.+|++++|.|.+. +.|.+.|.|+|++ ..+ ....|+.+...++.+.|.|.++
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 100 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITS--TDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENM 100 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEE--EEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC----
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecC--CcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCC
Confidence 46677778899999999999999998 4556689999953 211 1133554444445668999999
Q ss_pred CCCCCeEEEEEEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeec
Q psy2148 982 YLRDSGLYTCKATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQL 1060 (1884)
Q Consensus 982 ~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 1060 (1884)
+.+|+|.|+|.|.|..+.. .....|.|...+ .+|.+....
T Consensus 101 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------------------~~p~v~~~~ 141 (233)
T 3bqu_C 101 LSEDVADYYCLQSDNLPYTFGGGTNLEIKRAD---------------------------------------AAPTVSIFP 141 (233)
T ss_dssp -CCCCSEEEEEECSSSSCCBCCCCBC---CCC---------------------------------------BCCEEEEEC
T ss_pred CHHHCEEEEEEEecCCceeecCCEEEEEeCCC---------------------------------------CCCEEEEeC
Confidence 9999999999999987632 122355664311 244444322
Q ss_pred CCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceEE--E-eeCc----EEEEEEcccCcCCcEEEEEEEE
Q psy2148 1061 QDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVKT--V-YDFG----FISLDMDYVYARDSGEYICRAT 1132 (1884)
Q Consensus 1061 ~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~~--~-~~~~----~~~l~i~~~~~~d~G~Y~C~a~ 1132 (1884)
.. ..+.+|+.++|.|.+.+ ..|. +.|.|+|||+.+..+..... . ..++ ...|.|.....+|+|.|+|.|.
T Consensus 142 ~~-~~~~~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 219 (233)
T 3bqu_C 142 PS-SEQLTSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEAT 219 (233)
T ss_dssp CC-HHHHHTTEEEEEEEEEE-EBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEE
T ss_pred CC-HHhhcCCceEEEEEEcc-ccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEE
Confidence 22 22336899999999984 2344 37999999998875511111 1 1111 2468999999999999999999
Q ss_pred cCCe
Q psy2148 1133 NKWG 1136 (1884)
Q Consensus 1133 n~~G 1136 (1884)
|...
T Consensus 220 n~~~ 223 (233)
T 3bqu_C 220 HKTS 223 (233)
T ss_dssp EC--
T ss_pred eCCC
Confidence 9754
No 342
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.56 E-value=3.7e-14 Score=164.28 Aligned_cols=190 Identities=18% Similarity=0.266 Sum_probs=123.4
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCC-----CcEEEEeeCC--EE---cc---------CCCcEEEEeeCCeEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDP-----SMTVEWFHNG--KA---LS---------AGSRIKTINDFGFVI 975 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P-----~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~ 975 (1884)
..+.+...+.++.+.+|++++|.|.+. +.| .+.|.|+|++ .. +. ...|+.+...++...
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~ 91 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSS--QSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFT 91 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEec--CCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEE
Confidence 457778888999999999999999998 444 4789999853 21 11 245777766666778
Q ss_pred EEEccCCCCCCeEEEEEEEcCCee-EEEEEEEEEEeecccccccchhHh-HhcchhhHHHHHHhhcccCcCCCCCCCCCC
Q psy2148 976 LEINDVYLRDSGLYTCKATNKHGE-ATTSCKLTVKGRQGIDVEPQVSAI-FANATKNIQKLEEALYRKDELIPDEEKPNP 1053 (1884)
Q Consensus 976 L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1884)
|.|.+++.+|+|.|.|.|.|..+. ....+.|.|...+.. ..|..++. +. ....
T Consensus 92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~-~~p~~pp~~~~------------------------~~~~ 146 (268)
T 1x9q_A 92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADD-AKKDAAKKDDA------------------------KKDD 146 (268)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC-----------------------------------------------
T ss_pred EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccC-CCccccccccc------------------------cccc
Confidence 999999999999999999998653 223457777654320 00000000 00 0000
Q ss_pred C-----ceeeecCCCcCcCCCCcEEEEEEEeeCCCC--CcEEEEEEC--CEec-------------------cCCCceEE
Q psy2148 1054 P-----VFTSQLQDNLDVPEAGKVHFDCRLEPKSDP--TMRIDWFFN--GRPF-------------------ATGSRVKT 1105 (1884)
Q Consensus 1054 p-----~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p--~~~v~W~k~--~~~l-------------------~~~~~~~~ 1105 (1884)
| .++.... ...+.+|++++|.|.+. +.+ .+.+.|||+ +..+ ....++..
T Consensus 147 ~~~~~~v~~~~~~-~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~ 223 (268)
T 1x9q_A 147 AKKDGGVKLDETG-GGLVQPGGAMKLSCVTS--GFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTI 223 (268)
T ss_dssp --CGGGCEEEEEC-CEEECTTCCEEEEEEEE--SSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEE
T ss_pred cccccceEEECCC-ceEecCCCcEEEEEEec--CccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEE
Confidence 0 1222222 36788999999999997 444 478999985 3221 11245554
Q ss_pred Eee--CcEEEEEEcccCcCCcEEEEEEEEcC
Q psy2148 1106 VYD--FGFISLDMDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1106 ~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
..+ .....|.|.+++.+|+|.|.|.|.|.
T Consensus 224 ~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 224 SRDDSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 433 23568999999999999999999885
No 343
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.56 E-value=1.9e-14 Score=164.62 Aligned_cols=183 Identities=15% Similarity=0.249 Sum_probs=122.8
Q ss_pred eeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEE--------------ccCCCcEEEEe-eCCeEEEEEcc
Q psy2148 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKA--------------LSAGSRIKTIN-DFGFVILEIND 980 (1884)
Q Consensus 918 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~--------------i~~~~~~~~~~-~~~~~~L~I~~ 980 (1884)
.+...+..+.+.+|++|+|.|.+. +.|.+.|.|+|. +.. .....|+.+.. ..+.+.|.|.+
T Consensus 3 ~v~~~p~~v~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~ 80 (245)
T 3nfj_J 3 TIHQWPATLVQPVGSPLSLECTVE--GTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKK 80 (245)
T ss_dssp EEEEECSEEEEETTCCEEEEEEEE--SCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESS
T ss_pred eeeCCCceEEecCCCCEEEEEEec--CCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECC
Confidence 456677889999999999999998 668889999992 211 01124555544 34567899999
Q ss_pred CCCCCCeEEEEEEEcCCe------eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCC
Q psy2148 981 VYLRDSGLYTCKATNKHG------EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054 (1884)
Q Consensus 981 ~~~~D~G~Y~C~a~N~~G------~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1054 (1884)
++.+|+|.|.|.|.|..| .....+.|.|...... ..+|
T Consensus 81 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~------------------------------------~~~P 124 (245)
T 3nfj_J 81 LLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNK------------------------------------VFPP 124 (245)
T ss_dssp CCGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGG------------------------------------CBCC
T ss_pred CChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCC------------------------------------CCCC
Confidence 999999999999999332 2334457777642111 0244
Q ss_pred ceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEe-------eCc----EEEEEEcccCcCC
Q psy2148 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVY-------DFG----FISLDMDYVYARD 1123 (1884)
Q Consensus 1055 ~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~-------~~~----~~~l~i~~~~~~d 1123 (1884)
.+.........+.+|+.+.|.|.+.+...|.+.|.|+|||+.+..+....... .++ ...|.|.....+|
T Consensus 125 ~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d 204 (245)
T 3nfj_J 125 EVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQN 204 (245)
T ss_dssp EEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTC
T ss_pred ceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhcc
Confidence 44433322234556999999999984222344799999999987643211000 122 1468888887788
Q ss_pred -cEEEEEEEEcCCeee
Q psy2148 1124 -SGEYICRATNKWGTA 1138 (1884)
Q Consensus 1124 -~G~Y~C~a~n~~G~~ 1138 (1884)
.|.|+|.|.|.....
T Consensus 205 ~g~~YtC~v~~~~~~~ 220 (245)
T 3nfj_J 205 PRNHFRCQVQFYGLSE 220 (245)
T ss_dssp TTCEEEEEEEECCBCS
T ss_pred CCCeEEEEEEECCCCC
Confidence 679999999976543
No 344
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.55 E-value=9.1e-15 Score=166.41 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=108.3
Q ss_pred cCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--ee---c---C-----------CCCCeEEEEe--CceeEEEEcc
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FP---I---T-----------SSPDFQIHTF--STKSILIMRQ 1701 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~---~---~-----------~~~~~~~~~~--~~~~~L~i~~ 1701 (1884)
.+..+.+.+|++++|.|.+.|.+ .+.+.|+|.. .. + . ...++.+... ....+|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (257)
T 3bn9_D 6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS 85 (257)
T ss_dssp EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence 34567899999999999999876 6889999853 11 1 0 1245665543 3457899999
Q ss_pred cccCCCeEEEEEEEeCCc----------e---EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec
Q psy2148 1702 VFMEDSGVFAVIAENRGG----------K---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA 1768 (1884)
Q Consensus 1702 v~~~DsG~Y~C~a~n~~g----------~---~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g 1768 (1884)
++.+|+|.|.|.+.|..| . ......|.|...+. .+|.+........+..|+.++|.|.+.|
T Consensus 86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~------~~P~v~~~~p~~~~~~g~~v~L~C~~~g 159 (257)
T 3bn9_D 86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAST------KGPSVFPLAPSSKSTSGGTAALGCLVKD 159 (257)
T ss_dssp CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCC------BCCEECCCCC-----------CCCEEEE
T ss_pred CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCC------cCCcEEEecCcccccCCCcEEEEEEEee
Confidence 999999999999999765 1 11345788874221 3676654433344678999999999998
Q ss_pred C-CCc-EEEEEeCCEecCCCCCeEEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEEEE
Q psy2148 1769 T-KPL-DVYWLKNGKKIIPDIRYKTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEARCE 1827 (1884)
Q Consensus 1769 ~-p~p-~v~W~k~~~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~ 1827 (1884)
. |.| .|+|+|++..+.......+...++ ...|.|.++..+| |.|+|.|.|..+.....
T Consensus 160 ~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~ 223 (257)
T 3bn9_D 160 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 223 (257)
T ss_dssp EBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEE
T ss_pred EECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEE
Confidence 5 877 999999998643211101111222 2368888888778 99999999987654433
No 345
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.55 E-value=1.4e-14 Score=161.55 Aligned_cols=174 Identities=13% Similarity=0.163 Sum_probs=118.0
Q ss_pred CCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--eecC----------------CCCCeEEEEe--CceeEEEEcccc
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--FPIT----------------SSPDFQIHTF--STKSILIMRQVF 1703 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~~~~----------------~~~~~~~~~~--~~~~~L~i~~v~ 1703 (1884)
+..+.+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ...++.+... ....+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 5567889999999999999875 5889999863 2110 1235555443 235689999999
Q ss_pred cCCCeEEEEEEEeCCce---EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CCc-EEEEEe
Q psy2148 1704 MEDSGVFAVIAENRGGK---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KPL-DVYWLK 1778 (1884)
Q Consensus 1704 ~~DsG~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~k 1778 (1884)
.+|+|.|.|.+.|..+. ....+.|.|..... .+|.+...+....+..|+.++|.|.+.|. |.| .|+|++
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~------~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 160 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQT------TAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNS 160 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCC------BCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCC------CCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEcc
Confidence 99999999999987432 22346788874221 35666654433446789999999999986 888 999999
Q ss_pred CCEecCCCCCeEEeecCCeEEE--EEccCCCCCCEEEEEEEEeCCeeEEEE
Q psy2148 1779 NGKKIIPDIRYKTLEEDNLFTL--LIIEAVVEDSGAYECVAMNNAGEARCE 1827 (1884)
Q Consensus 1779 ~~~~l~~~~~~~~~~~~~~~~L--~i~~~~~~d~G~Y~C~a~N~~G~~~~~ 1827 (1884)
++..+........... +.+.+ .|.....+| |.|+|.|.|..|.....
T Consensus 161 ~g~~~~~~~~~~~~~~-g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~ 209 (215)
T 1c5d_H 161 GALSSDVHTFPAVLQS-GLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVD 209 (215)
T ss_dssp GTTCCSCCBCCCEEET-TEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred CCccCceEecCcccCC-CCEEEEEEEecccCCC-CeEEEEEEeCCCCccEE
Confidence 9876532211111122 33222 233444456 99999999999876543
No 346
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.55 E-value=1.3e-14 Score=166.04 Aligned_cols=179 Identities=15% Similarity=0.132 Sum_probs=125.8
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEe--------------CCeecCC----CCCeEEEEe-CceeEEEEc
Q psy2148 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFR--------------EDFPITS----SPDFQIHTF-STKSILIMR 1700 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~--------------~~~~~~~----~~~~~~~~~-~~~~~L~i~ 1700 (1884)
+.++..+..+.+.+|+++.|.| ..+.|.+.+.|+| ++..... ..++.+... ....+|.|.
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 81 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ 81 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence 4566677888999999999999 7788999999998 2221111 145655542 345689999
Q ss_pred ccccCCCeEEEEEEEeC----CceEEEEEEEEEEecccCCCCCCCCCeEE-eccCceEEcCCceEEEEEEEec-CCCc-E
Q psy2148 1701 QVFMEDSGVFAVIAENR----GGKAKCSANLVVEEKRQGGRGGVVPPSFL-TTISSAVINVGQLARFDAKISA-TKPL-D 1773 (1884)
Q Consensus 1701 ~v~~~DsG~Y~C~a~n~----~g~~~~~~~l~V~~~~~~~~~~~~~P~~~-~~~~~~~~~~G~~~~l~C~~~g-~p~p-~ 1773 (1884)
+++.+|+|.|.|.+.+. .+.......|.|...... ..+|.+. ..+....+..|+.++|.|.+.| .|.+ .
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~----~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~ 157 (245)
T 4ei6_B 82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKN----VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE 157 (245)
T ss_dssp SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGG----CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCC----CCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeE
Confidence 99999999999999853 334445567888742111 1356554 4445555667999999999998 5555 8
Q ss_pred EEEEeCCEecCCCCCeEEee-------cCCe----EEEEEccCCCCC-CEEEEEEEEeCCee
Q psy2148 1774 VYWLKNGKKIIPDIRYKTLE-------EDNL----FTLLIIEAVVED-SGAYECVAMNNAGE 1823 (1884)
Q Consensus 1774 v~W~k~~~~l~~~~~~~~~~-------~~~~----~~L~i~~~~~~d-~G~Y~C~a~N~~G~ 1823 (1884)
|.|+|+|..+..+.+..... .++. ..|.|.....+| .|.|+|.|.|....
T Consensus 158 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 158 LSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp EEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 99999999986543211100 1221 258888888778 99999999998654
No 347
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.55 E-value=3e-14 Score=162.26 Aligned_cols=180 Identities=14% Similarity=0.212 Sum_probs=123.4
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEee--------------CCEEcc---CCCcEEEEee-CCeEEEEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH--------------NGKALS---AGSRIKTIND-FGFVILEI 978 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~--------------~g~~i~---~~~~~~~~~~-~~~~~L~I 978 (1884)
+.++..+.++.+.+|++++|.|.+. + |.+.|.|+| ++.... ...|+.+..+ .+.+.|.|
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~~--~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I 79 (240)
T 3q5y_A 3 SGVVQSPRHIIKEKGGRSVLTCIPI--S-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNM 79 (240)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECC--T-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEE
T ss_pred cccccCcceeeecCCCcEEEEEEeC--C-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEE
Confidence 4566777889999999999999986 3 677999999 222221 1246666543 35678999
Q ss_pred ccCCCCCCeEEEEEEEcC---CeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCc
Q psy2148 979 NDVYLRDSGLYTCKATNK---HGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~---~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1055 (1884)
.+++.+|+|.|.|.|.+. .+.....+.|.|...... ..+|.
T Consensus 80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~------------------------------------~~~p~ 123 (240)
T 3q5y_A 80 SALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRN------------------------------------VTPPK 123 (240)
T ss_dssp CSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGG------------------------------------CBCCE
T ss_pred CcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccC------------------------------------CCCCe
Confidence 999999999999999832 223334457777632110 13444
Q ss_pred eeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceE---EEeeCcE----EEEEEcccCcCC-cEE
Q psy2148 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVK---TVYDFGF----ISLDMDYVYARD-SGE 1126 (1884)
Q Consensus 1056 ~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~---~~~~~~~----~~l~i~~~~~~d-~G~ 1126 (1884)
+.........+.+|+.++|.|.+.+ ..|.+ .|.|+|||+.+..+.... ....++. ..|.|.....+| .|.
T Consensus 124 ~~~~~~~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ 202 (240)
T 3q5y_A 124 VSLFEPSKAEIANKQKATLVCLARG-FFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNH 202 (240)
T ss_dssp EEEECCCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCE
T ss_pred eEEeCCchhhcccCCceEEEEEEee-EECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCE
Confidence 4433333344557899999999984 24555 799999999997653321 1222333 348999988888 779
Q ss_pred EEEEEEcCCe
Q psy2148 1127 YICRATNKWG 1136 (1884)
Q Consensus 1127 Y~C~a~n~~G 1136 (1884)
|+|.|.|...
T Consensus 203 YtC~v~~~~~ 212 (240)
T 3q5y_A 203 FRCQVQFHGL 212 (240)
T ss_dssp EEEEEEECCB
T ss_pred EEEEEEcCCC
Confidence 9999998754
No 348
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.55 E-value=3.3e-14 Score=165.43 Aligned_cols=200 Identities=12% Similarity=0.184 Sum_probs=127.5
Q ss_pred eeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc-----------------cCCCcEEEE--eeCCeEEE
Q psy2148 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL-----------------SAGSRIKTI--NDFGFVIL 976 (1884)
Q Consensus 918 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i-----------------~~~~~~~~~--~~~~~~~L 976 (1884)
.+.. +.++.+.+|++|+|.|.+.+...+.+.+.|+|.. ..+ ....|+.+. ...+.+.|
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (280)
T 3fku_X 3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYM 81 (280)
T ss_dssp CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEE
T ss_pred eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEE
Confidence 4455 7788999999999999998533366789999832 111 012466665 33456789
Q ss_pred EEccCCCCCCeEEEEEEEcC---------CeeEEEEEEEEEEe-ecccccccchhHhHhcchhhHHHHHHhhcccCcCCC
Q psy2148 977 EINDVYLRDSGLYTCKATNK---------HGEATTSCKLTVKG-RQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIP 1046 (1884)
Q Consensus 977 ~I~~~~~~D~G~Y~C~a~N~---------~G~~~~~~~l~V~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1884)
.|.+++.+|+|.|.|.|.|. .+.....+.|.|.. ++......
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~---------------------------- 133 (280)
T 3fku_X 82 DLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGG---------------------------- 133 (280)
T ss_dssp EECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC-------------------------------------
T ss_pred EECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCC----------------------------
Confidence 99999999999999999997 22233345677754 11000000
Q ss_pred CCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEEC--CEecc------------CCCceEEEeeCcEE
Q psy2148 1047 DEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFN--GRPFA------------TGSRVKTVYDFGFI 1112 (1884)
Q Consensus 1047 ~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~--~~~l~------------~~~~~~~~~~~~~~ 1112 (1884)
......+|.+... .. +.+.+|++++|.|.+.+...+.+.+.|||. +..+. ...++....+....
T Consensus 134 ~~~~~~~~~v~~~-p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~ 211 (280)
T 3fku_X 134 SGGGGIQPGLTQP-PS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTA 211 (280)
T ss_dssp -----CCCSBBCC-SE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEE
T ss_pred CCceEeeeEEEeC-Cc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEE
Confidence 0000012222222 22 678899999999999731222478999983 32221 12456665566677
Q ss_pred EEEEcccCcCCcEEEEEEEEcCCee---eEEEEEEEEee
Q psy2148 1113 SLDMDYVYARDSGEYICRATNKWGT---AMTKAKVICKA 1148 (1884)
Q Consensus 1113 ~l~i~~~~~~d~G~Y~C~a~n~~G~---~~~~~~l~v~~ 1148 (1884)
.|.|.+++.+|+|.|.|.+.|..+. ......|.|..
T Consensus 212 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~ 250 (280)
T 3fku_X 212 SLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLG 250 (280)
T ss_dssp EEEECSCCGGGCSEEEEEEEETTTTEEEEBCCCEEEEC-
T ss_pred EEEECCCCHHHCEEEEEEEecCCCCceEECCCEEEEECC
Confidence 8999999999999999999998622 12234666654
No 349
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.55 E-value=2.3e-14 Score=163.89 Aligned_cols=180 Identities=16% Similarity=0.283 Sum_probs=123.5
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEee--------------CCEEccCC----CcEEEEee-CCeEEEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH--------------NGKALSAG----SRIKTIND-FGFVILE 977 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~--------------~g~~i~~~----~~~~~~~~-~~~~~L~ 977 (1884)
+.++..+..+.+.+|++++|.| .. +.|.+.|.|+| ++..+... .|+.+..+ .+.+.|.
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~ 79 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DP--VSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLK 79 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-EC--CTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEE
T ss_pred cceEeCCceEEecCCCCEEEEE-Ec--CCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEE
Confidence 5667778889999999999999 44 66888999999 33322221 67776653 4567899
Q ss_pred EccCCCCCCeEEEEEEEcC----CeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCC
Q psy2148 978 INDVYLRDSGLYTCKATNK----HGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNP 1053 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~----~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1884)
|.+++.+|+|.|.|.|.|. .+.....+.|.|...... ..+
T Consensus 80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~------------------------------------~~~ 123 (245)
T 4ei6_B 80 IQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKN------------------------------------VFP 123 (245)
T ss_dssp ECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGG------------------------------------CBC
T ss_pred ECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCC------------------------------------CCC
Confidence 9999999999999999963 333444567777642110 023
Q ss_pred CceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEe-------eCcE----EEEEEcccCc
Q psy2148 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVY-------DFGF----ISLDMDYVYA 1121 (1884)
Q Consensus 1054 p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~-------~~~~----~~l~i~~~~~ 1121 (1884)
|.+.........+.+|+.++|.|.+.+ ..|.+ .|.|+|||+.+..+.+..... .++. ..|.|.....
T Consensus 124 p~~~~~~~~~~~~~~g~~v~l~C~~~g-~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~ 202 (245)
T 4ei6_B 124 PEVAVFEPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW 202 (245)
T ss_dssp CEEEEECCCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHH
T ss_pred ceEEEeCCCcccccCCCceEEEEEEee-EeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHh
Confidence 444333222244556999999999984 24544 899999999987643221100 1222 3488888888
Q ss_pred CC-cEEEEEEEEcCCe
Q psy2148 1122 RD-SGEYICRATNKWG 1136 (1884)
Q Consensus 1122 ~d-~G~Y~C~a~n~~G 1136 (1884)
+| .|.|+|.|.|...
T Consensus 203 ~d~~g~ytC~v~~~~l 218 (245)
T 4ei6_B 203 QNPRNHFRCQVQFYGL 218 (245)
T ss_dssp SCTTCEEEEEEEECCB
T ss_pred ccCCCeEEEEEEECCC
Confidence 88 9999999998744
No 350
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.54 E-value=5.2e-14 Score=164.89 Aligned_cols=196 Identities=17% Similarity=0.235 Sum_probs=124.5
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCC--CcEEEEeeCC--EEcc-----------------CCCcEEEEee--CCeEEEEE
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDP--SMTVEWFHNG--KALS-----------------AGSRIKTIND--FGFVILEI 978 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~I 978 (1884)
.+..+.+.+|++++|.|.+. +.| .+.|.|+|++ ..+. ...|+.+..+ ++..+|.|
T Consensus 28 ~p~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 105 (291)
T 2gki_A 28 QSGPELVKPGASVKMSCKAS--GYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMEL 105 (291)
T ss_dssp ECCCEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEE
T ss_pred cCCcEEecCCCCEEEEEecc--CCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEE
Confidence 35578999999999999998 444 5789999952 2110 1245554432 34678999
Q ss_pred ccCCCCCCeEEEEEEEcCC-ee----EEEEEEEEEEeecccccc-cchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCC
Q psy2148 979 NDVYLRDSGLYTCKATNKH-GE----ATTSCKLTVKGRQGIDVE-PQVSAIFANATKNIQKLEEALYRKDELIPDEEKPN 1052 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~~-G~----~~~~~~l~V~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1884)
.+++.+|+|.|.|.+.|.. |. ....+.|.|..+...... ...+ ....
T Consensus 106 ~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~---------------------------~~~~ 158 (291)
T 2gki_A 106 SSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSG---------------------------GGGS 158 (291)
T ss_dssp CSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC-------------------------------------------
T ss_pred CcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCC---------------------------CCCc
Confidence 9999999999999999975 21 112346777641000000 0000 0001
Q ss_pred CCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc------EEEEEEC--CEec---c---------CCCceEEEeeCcEE
Q psy2148 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM------RIDWFFN--GRPF---A---------TGSRVKTVYDFGFI 1112 (1884)
Q Consensus 1053 ~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~------~v~W~k~--~~~l---~---------~~~~~~~~~~~~~~ 1112 (1884)
++.+. .....+.+.+|++++|.|.+. +.|.+ .+.|||+ |..+ . ...++....+....
T Consensus 159 ~~~v~-~~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~ 235 (291)
T 2gki_A 159 DLVMS-QSPSSLAVSAGEKVTMSCKSS--QSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDF 235 (291)
T ss_dssp CCCEE-CSCSEEEEETTSCEEEEEEES--SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE
T ss_pred cceEE-cCCCEEEEcCCCcEEEEEEcC--CccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEE
Confidence 22222 222236688999999999997 55554 8999996 3221 1 13455554455667
Q ss_pred EEEEcccCcCCcEEEEEEEEcCCeeeEEE-EEEEEeec
Q psy2148 1113 SLDMDYVYARDSGEYICRATNKWGTAMTK-AKVICKAK 1149 (1884)
Q Consensus 1113 ~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~-~~l~v~~~ 1149 (1884)
.|.|.+++.+|+|.|.|.|.|........ ..|.|+..
T Consensus 236 ~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~ 273 (291)
T 2gki_A 236 TLTISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHH 273 (291)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred EEEECCCCHHHCEEEEEEEccCCceEEcCCEEEEEEee
Confidence 89999999999999999999975433332 35666543
No 351
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.54 E-value=3.9e-14 Score=138.95 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=92.0
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.||.|+..+.++.+.+|+.++|.|.+. +.|.+.|+|+|+|..+..+.++.+....+...|.|.+++.+|+|.|+|.|.
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~--g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 83 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE 83 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEE--SSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEE--cCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence 689999999999999999999999999 788899999999999998889988877777899999999999999999999
Q ss_pred cCCeeEEEEEEEEEEeeccccc
Q psy2148 995 NKHGEATTSCKLTVKGRQGIDV 1016 (1884)
Q Consensus 995 N~~G~~~~~~~l~V~~~~~~~~ 1016 (1884)
|..|..+..+.|.|.+.|..+.
T Consensus 84 N~~g~~~~~~~l~V~~~p~~P~ 105 (114)
T 2cqv_A 84 NKLGSRQAQVNLTVVDKPDPPA 105 (114)
T ss_dssp CSSCEEECCEEEEEECSCSCCC
T ss_pred ECCCcEEEEEEEEEECCCCCCC
Confidence 9999999999999998776543
No 352
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.54 E-value=3.2e-14 Score=160.22 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=117.5
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCC----cEEEEeeC--CEEcc----------------CCCcEEEEee--CCeEEEEE
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPS----MTVEWFHN--GKALS----------------AGSRIKTIND--FGFVILEI 978 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~----~~v~W~~~--g~~i~----------------~~~~~~~~~~--~~~~~L~I 978 (1884)
+..+.+.+|++++|.|.+. +.|. +.|.|+|+ |..+. ...|+.+..+ .+...|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 84 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFS--GFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI 84 (228)
T ss_dssp ECCSEECTTCCEEEEEEEE--SSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred CCceeecCCCeEEEEEEEe--CcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence 4668899999999999998 5554 78999984 22210 1346766543 24578999
Q ss_pred ccCCCCCCeEEEEEEEcCCe------e---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCC
Q psy2148 979 NDVYLRDSGLYTCKATNKHG------E---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEE 1049 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~~G------~---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1884)
.+++.+|+|.|.|.|.|..| . ....+.|.|...+
T Consensus 85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~------------------------------------- 127 (228)
T 3bae_H 85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK------------------------------------- 127 (228)
T ss_dssp CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC-------------------------------------
T ss_pred cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC-------------------------------------
Confidence 99999999999999999765 2 1123677776311
Q ss_pred CCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeC---cEEEEEEcccCcCCcE
Q psy2148 1050 KPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDF---GFISLDMDYVYARDSG 1125 (1884)
Q Consensus 1050 ~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G 1125 (1884)
+.+|.+...... ..+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+.......+...+ ....|.|.....+| |
T Consensus 128 -~~~P~i~~~~~~-~~~~~g~~~~l~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g 203 (228)
T 3bae_H 128 -TTAPSVYPLAPV-CGDTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-E 203 (228)
T ss_dssp -CBCCEEEEECC------CCSEEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-S
T ss_pred -CCCCEEEEeccc-ccccCCCCEEEEEEEcc-EeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-C
Confidence 023433322211 23568999999999983 33666 99999998764311111111111 13468999888766 9
Q ss_pred EEEEEEEcCCeeeEEEEE
Q psy2148 1126 EYICRATNKWGTAMTKAK 1143 (1884)
Q Consensus 1126 ~Y~C~a~n~~G~~~~~~~ 1143 (1884)
.|+|.|.|..|.......
T Consensus 204 ~YtC~~~n~~~~~~~~~~ 221 (228)
T 3bae_H 204 SITCNVAHPASSTKVDKK 221 (228)
T ss_dssp CCEEEEEEGGGTEEEEEE
T ss_pred cEEEEEEECCCCCCEEEE
Confidence 999999999987654433
No 353
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.53 E-value=9.6e-14 Score=157.88 Aligned_cols=192 Identities=17% Similarity=0.159 Sum_probs=125.0
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EE---cc--------------CCCcEEEEeeC--CeEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KA---LS--------------AGSRIKTINDF--GFVI 975 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~---i~--------------~~~~~~~~~~~--~~~~ 975 (1884)
+.+...+..+.+.+|++++|.|.+.+...+.+.|.|+|+. .. +. ...|+.+..+. +...
T Consensus 2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 81 (242)
T 1hxm_B 2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST 81 (242)
T ss_dssp CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence 4566778889999999999999998432366789999942 21 10 34577665443 4678
Q ss_pred EEEccCCCCCCeEEEEEEEcCCe-----e--EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCC
Q psy2148 976 LEINDVYLRDSGLYTCKATNKHG-----E--ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDE 1048 (1884)
Q Consensus 976 L~I~~~~~~D~G~Y~C~a~N~~G-----~--~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1884)
|.|.+++.+|+|.|.|.+.|..+ . ......|.|...+....
T Consensus 82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~-------------------------------- 129 (242)
T 1hxm_B 82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDAD-------------------------------- 129 (242)
T ss_dssp EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSC--------------------------------
T ss_pred EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCC--------------------------------
Confidence 99999999999999999998631 1 11245788875321000
Q ss_pred CCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCE-eccCCCceEEEeeCc----EEEEEEcccCcC
Q psy2148 1049 EKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGR-PFATGSRVKTVYDFG----FISLDMDYVYAR 1122 (1884)
Q Consensus 1049 ~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~-~l~~~~~~~~~~~~~----~~~l~i~~~~~~ 1122 (1884)
.+|...........+.+|+.++|.|.+.+ ..|. +.|.|+++|. .+...........++ ...|.|.....
T Consensus 130 ---~~p~~~v~~p~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~- 204 (242)
T 1hxm_B 130 ---VSPKPTIFLPSIAETKLQKAGTYLCLLEK-FFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL- 204 (242)
T ss_dssp ---CSCBCCCCCCCGGGGGSSSCEEEEEEEEE-ESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-
T ss_pred ---cCCCceEECCChhhcccCCCceEEEEEee-EECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-
Confidence 11211111112234567999999999983 3354 7999999997 564321000111222 24688887664
Q ss_pred CcEEEEEEEEcCCeeeEEEEEEEE
Q psy2148 1123 DSGEYICRATNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1123 d~G~Y~C~a~n~~G~~~~~~~l~v 1146 (1884)
| |.|+|.|.|..|.......+.+
T Consensus 205 ~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 205 D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred C-CEEEEEEEeCCCCCCceeEeec
Confidence 4 9999999999987755555544
No 354
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.53 E-value=3e-14 Score=165.44 Aligned_cols=180 Identities=15% Similarity=0.144 Sum_probs=124.7
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeC--Ceec------------CCC----CCeEEEEe-CceeEEEE
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRE--DFPI------------TSS----PDFQIHTF-STKSILIM 1699 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~--~~~~------------~~~----~~~~~~~~-~~~~~L~i 1699 (1884)
.+.++..+..+.+.+|++++|.|.+. .+.+.+.|+|. +..+ ... .++.+... ....+|.|
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 34566667788999999999999987 68899999992 2111 111 45555432 33578999
Q ss_pred cccccCCCeEEEEEEEeC--CceEEEEEEEEEEecccCCCCCCCCCeEEe-ccCceEEcCCceEEEEEEEecCCC-c-EE
Q psy2148 1700 RQVFMEDSGVFAVIAENR--GGKAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISATKP-L-DV 1774 (1884)
Q Consensus 1700 ~~v~~~DsG~Y~C~a~n~--~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~-~~~~~~~~~G~~~~l~C~~~g~p~-p-~v 1774 (1884)
.+++.+|+|.|.|.+.|. .+.......|.|...... ..+|.+.. .+....+..|+.++|.|.+.|.|+ | .|
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~----~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v 180 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKN----VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 180 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGG----CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCccc----ccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEE
Confidence 999999999999999983 344445567888752211 13666543 445555667999999999999554 4 89
Q ss_pred EEEeCCEecCCCCCeEE-------e-ecCC---eEEEEEccCCCCC-CEEEEEEEEeCCee
Q psy2148 1775 YWLKNGKKIIPDIRYKT-------L-EEDN---LFTLLIIEAVVED-SGAYECVAMNNAGE 1823 (1884)
Q Consensus 1775 ~W~k~~~~l~~~~~~~~-------~-~~~~---~~~L~i~~~~~~d-~G~Y~C~a~N~~G~ 1823 (1884)
+|+|+|+.+..+.+... . .++. ...|.|.....+| .|.|+|.|.|....
T Consensus 181 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 181 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp EEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 99999998865321110 0 0111 1367888887777 99999999998654
No 355
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.53 E-value=1.2e-13 Score=154.79 Aligned_cols=172 Identities=15% Similarity=0.216 Sum_probs=118.1
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc-------------------cCCCcEEEEee--CCeEEEEE
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL-------------------SAGSRIKTIND--FGFVILEI 978 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i-------------------~~~~~~~~~~~--~~~~~L~I 978 (1884)
.+..+.+.+|++|+|.|.+.+...+.+.|.|||.. ..+ ....|+.+..+ .+.+.|.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 85 (221)
T 3m8o_H 6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM 85 (221)
T ss_dssp EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence 34567899999999999998432346799999832 111 01356766544 45678999
Q ss_pred ccCCCCCCeEEEEEEEcCC--eeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCce
Q psy2148 979 NDVYLRDSGLYTCKATNKH--GEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVF 1056 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~~--G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1056 (1884)
.+++.+|+|.|.|.+.|.. ......+.|.|...+. .+|.+
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------------~~p~v 127 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASP--------------------------------------TSPKV 127 (221)
T ss_dssp CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCC--------------------------------------BCCEE
T ss_pred CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCC--------------------------------------CCCeE
Confidence 9999999999999999874 2223345677753111 23444
Q ss_pred eeecCCCcCcCCCCcEEEEEEEeeCCCCC--cEEEEEECCEecc----------CCCceEEEeeCcEEEEEEcccCcCCc
Q psy2148 1057 TSQLQDNLDVPEAGKVHFDCRLEPKSDPT--MRIDWFFNGRPFA----------TGSRVKTVYDFGFISLDMDYVYARDS 1124 (1884)
Q Consensus 1057 ~~~~~~~~~v~~g~~~~l~C~v~~~~~p~--~~v~W~k~~~~l~----------~~~~~~~~~~~~~~~l~i~~~~~~d~ 1124 (1884)
...... .. .+|+.++|.|.+.+ ..|. +.|.|+++|+.+. .+..+.+ ...|.|.....+|+
T Consensus 128 ~~~~~~-~~-~~g~~v~L~C~~~~-~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d~ 199 (221)
T 3m8o_H 128 FPLSLC-ST-QPDGNVVIACLVQG-FFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT-----SSQLTLPATQCLAG 199 (221)
T ss_dssp EEEECC-SC-CCTTEEEEEEEEEE-EBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEE-----EEEEEEEGGGSCTT
T ss_pred EEecCc-cc-ccCCCEEEEEEEEe-eECCCCEEEEEEECCEECceEEcCceeeCCCCcEEE-----EEEEEECHHHcCCC
Confidence 322222 22 68999999999984 2565 5899999998773 1222221 13599999999999
Q ss_pred EEEEEEEEcCCeeeE
Q psy2148 1125 GEYICRATNKWGTAM 1139 (1884)
Q Consensus 1125 G~Y~C~a~n~~G~~~ 1139 (1884)
|.|+|.|.|..|...
T Consensus 200 g~ytC~v~~~~~~~~ 214 (221)
T 3m8o_H 200 KSVTCHVKHYTNPSQ 214 (221)
T ss_dssp CEEEEEEEETTSCCE
T ss_pred CeEEEEEEECCCCce
Confidence 999999999986543
No 356
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.53 E-value=4.5e-13 Score=141.86 Aligned_cols=237 Identities=11% Similarity=0.212 Sum_probs=152.5
Q ss_pred cccCCCceEEEEEEEEEcCCC---ceEEEEeeCCEeeccccceEEEeeCCeEEEEEcCCCCCCCEEEEEEEEcCCeeeEE
Q psy2148 318 SNLSEGEIAHFEASLIPVGDQ---TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 394 (1884)
Q Consensus 318 ~~v~~g~~~~l~c~~~~~g~p---~~~i~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 394 (1884)
..+..|+.++|+|.+.. |.| +.+++|+|||..+.... ..|.|..+...|+|.|+|.+.+..|....
T Consensus 12 ~~i~~GdsVTLTatVaG-GkP~pspyTYqWyKDG~~IsGaT----------~tLti~s~t~sdSG~YqCvVTDa~Gcs~t 80 (304)
T 3shs_A 12 RCFLAGDGFTLTATVAG-DEPLPSNLTYTWTKDDQPHENNT----------ATLTVADATSENAGSYKVTVQDTDTMTSV 80 (304)
T ss_dssp SSBCTTCCEEEEEEEEE-SSSCCCCEEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEEETTTCCEE
T ss_pred ccccCCCCEEEEEEecC-CCCCCCCceEEEEECCccccCCc----------ceEEeeeccccCCeEEEEEEEECCCCeee
Confidence 45889999999999743 777 67999999998865432 26889999999999999999998887655
Q ss_pred EEEEEEeecCCCCCCceEeccCCccCccCCCeEEEEEEE--eeCCCC-----CCeEEEeeCCEEccccCcEEEEecCCEE
Q psy2148 395 SVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTL--TPVNDP-----ELKVEWFHNGKPIFHKNRVKMVSDFGFV 467 (1884)
Q Consensus 395 ~~~l~V~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~--~~~~~p-----~~~i~W~k~g~~l~~~~~~~~~~~~~~~ 467 (1884)
+..+.|... ..+.+....+....+..|..+.|.+.+ ++ |.| ..+++|+||+..+....
T Consensus 81 Ss~VtVT~~---a~l~i~it~P~s~~vssg~sVtL~aTVt~SG-GtppA~~~~yTYQWyKngt~IsgAq----------- 145 (304)
T 3shs_A 81 ESEVFLMEE---AELIVNITEPQHFYVSSQTDVELHATVKFSG-GKTPADNYELHYSWSKGEDVIDTTQ----------- 145 (304)
T ss_dssp ECCCEEECB---CCEEEEESSCSEEEECSSCCEEEEEEEEETT-SCCSSTTCCCEEEEEETTEEEESSS-----------
T ss_pred eeeEEEecc---CceeEEecCCCceeccCCCeEEEEEEEeccC-CCCcccCCCceeEEeeCCeEccCcc-----------
Confidence 555555421 122222222222224567899999988 43 344 57999999998775332
Q ss_pred EEEEcccCCCCcEEEEEEEEeCceec--CCcceEEeecccCCCCCCCccccCCCCeEEEEEEEee------CCCCc--cE
Q psy2148 468 VMDIAYVQSHDSGEYVCRAWNNFIFI--PPFPIFIFHQIRLPSPSQDNLDVPEAGKVHFDCRLEP------KSDPT--MR 537 (1884)
Q Consensus 468 ~L~i~~v~~~d~G~Y~C~a~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~L~C~~~~------~~~p~--~~ 537 (1884)
.|++......++|.|+|.+.|..+.. +....+.+....++........+..|+.+.|.-.+.. .+.|. ++
T Consensus 146 ~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (304)
T 3shs_A 146 DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIK 225 (304)
T ss_dssp EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEE
T ss_pred ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEE
Confidence 46777788899999999999986631 1111122222222222223456778888888766531 22333 45
Q ss_pred EEEeeC--Cee----ecCC-----CceEEEeeCceEEEEEccccccccEEEEEEEEc
Q psy2148 538 IDWFFN--GRP----FATG-----SRVKTVYDFGFISLDMDYVYARDSGEYICRATN 583 (1884)
Q Consensus 538 i~W~~~--~~~----l~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 583 (1884)
+.|+.. |.. +.+. ..+.+.. ++ +|.-..+..+|...|.|.|..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~ 279 (304)
T 3shs_A 226 YNWYLQREGQLSPTLIGSEVGEALEGFSITP-DG--HLFKESATYDDTAKFWCVAKL 279 (304)
T ss_dssp EEEEEECTTCCSCEEEESSSEECGGGEEECT-TS--CEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEeecCccCchhhhhhhhhhhccceeCC-Cc--ceeecccccccchheeeHHHH
Confidence 678863 221 1111 1122221 22 466678889999999999863
No 357
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.53 E-value=3.2e-14 Score=161.82 Aligned_cols=187 Identities=14% Similarity=0.215 Sum_probs=125.7
Q ss_pred eeeecCCceeecCCCeEEEEEEEecc--CCCeEEEEeCC--ee---cC--------------CCCCeEEEEeC--ceeEE
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--FP---IT--------------SSPDFQIHTFS--TKSIL 1697 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~--~~~~L 1697 (1884)
.+...+..+.+.+|++++|.|.+.+. +.+.+.|+|+. .. +. ...++.+.... ...+|
T Consensus 3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (242)
T 1hxm_B 3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL 82 (242)
T ss_dssp EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence 45556778899999999999999986 67899999853 21 10 23466655433 46789
Q ss_pred EEcccccCCCeEEEEEEEeCCc-----e--EEEEEEEEEEecccCCCCCCCCCeEEe-ccCceEEcCCceEEEEEEEecC
Q psy2148 1698 IMRQVFMEDSGVFAVIAENRGG-----K--AKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISAT 1769 (1884)
Q Consensus 1698 ~i~~v~~~DsG~Y~C~a~n~~g-----~--~~~~~~l~V~~~~~~~~~~~~~P~~~~-~~~~~~~~~G~~~~l~C~~~g~ 1769 (1884)
.|.+++.+|+|.|.|.+.+..+ . ......|.|...+... ..+|.... .+....+..|+.++|.|.+.|.
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~---~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~ 159 (242)
T 1hxm_B 83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDA---DVSPKPTIFLPSIAETKLQKAGTYLCLLEKF 159 (242)
T ss_dssp EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCS---CCSCBCCCCCCCGGGGGSSSCEEEEEEEEEE
T ss_pred EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCC---CcCCCceEECCChhhcccCCCceEEEEEeeE
Confidence 9999999999999999988631 1 1234678887532100 01232221 1333446679999999999985
Q ss_pred -CC-cEEEEEeCCE-ecCCCC-CeEEeecCC---eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2148 1770 -KP-LDVYWLKNGK-KIIPDI-RYKTLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1770 -p~-p~v~W~k~~~-~l~~~~-~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
|. +.|+|++++. .+.... ......++. ...|.|..... | |.|+|.|.|..+....+..|.+
T Consensus 160 ~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 160 FPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp SSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred ECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 65 7999999997 564321 000111221 23788887765 5 9999999999987755555555
No 358
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.53 E-value=5.7e-14 Score=134.99 Aligned_cols=97 Identities=32% Similarity=0.481 Sum_probs=89.8
Q ss_pred cCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 913 LGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 913 ~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
+..+|.|...+.+..+.+|+.+.|.|.+. +.|.|.|+|+|+|..+..+.++.+...++.++|.|.+++.+|+|.|+|.
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 82 (103)
T 3qp3_A 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82 (103)
T ss_dssp TCEEEEEEECCCCEEEETTCCEEEEEEEE--EESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCCCEEEeCCcceEEeCCCeEEEEEEEE--ecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEE
Confidence 34689999999999999999999999998 6788899999999999999999888888888999999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEee
Q psy2148 993 ATNKHGEATTSCKLTVKGR 1011 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~ 1011 (1884)
|.|..|..+..+.|.|.+.
T Consensus 83 a~N~~G~~~~~~~l~V~~~ 101 (103)
T 3qp3_A 83 CTNYKGEASDYATLDVTGG 101 (103)
T ss_dssp EEETTEEEEEEEEEEEECC
T ss_pred EEeCCCcEEEEEEEEEECC
Confidence 9999999999999999753
No 359
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.53 E-value=8.2e-14 Score=162.39 Aligned_cols=182 Identities=18% Similarity=0.170 Sum_probs=127.7
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--eec-------------C----CCCCeEEEEe-CceeEEE
Q psy2148 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FPI-------------T----SSPDFQIHTF-STKSILI 1698 (1884)
Q Consensus 1639 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~~-------------~----~~~~~~~~~~-~~~~~L~ 1698 (1884)
.+.+...+..+.+.+|+++.|.|.+.+.|.+.+.|+|++ ..+ . ...++.+... ....+|.
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~ 103 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT 103 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence 456777788899999999999999998899999999864 110 0 1245555542 4567899
Q ss_pred EcccccCCCeEEEEEEEeCCc------eEEEEEEEEEEecccCCCCCCCCCeEEec-cCceEEcCCceEEEEEEEecC-C
Q psy2148 1699 MRQVFMEDSGVFAVIAENRGG------KAKCSANLVVEEKRQGGRGGVVPPSFLTT-ISSAVINVGQLARFDAKISAT-K 1770 (1884)
Q Consensus 1699 i~~v~~~DsG~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~~~~~~~P~~~~~-~~~~~~~~G~~~~l~C~~~g~-p 1770 (1884)
|.+++.+|+|.|.|.+.|..| .....+.|.|...... ..+|.+... +....+..|+.++|.|.+.|. |
T Consensus 104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~----~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P 179 (279)
T 2wbj_D 104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKN----VFPPEVAVFEPSEAEISHTQKATLVCLATGFYP 179 (279)
T ss_dssp ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGG----CBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBS
T ss_pred EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCC----CCCCEEEEECCCcccccCCCceEEEEEEeeEcC
Confidence 999999999999999999422 1223457888753210 136777643 334445579999999999986 5
Q ss_pred C-cEEEEEeCCEecCCCCCeE---E---e-ecCC----eEEEEEccCCCC-CCEEEEEEEEeCCeeE
Q psy2148 1771 P-LDVYWLKNGKKIIPDIRYK---T---L-EEDN----LFTLLIIEAVVE-DSGAYECVAMNNAGEA 1824 (1884)
Q Consensus 1771 ~-p~v~W~k~~~~l~~~~~~~---~---~-~~~~----~~~L~i~~~~~~-d~G~Y~C~a~N~~G~~ 1824 (1884)
. +.|+|+|||+.+..+.... . . ..++ ...|.|...... |.|.|+|.|.|.....
T Consensus 180 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~ 246 (279)
T 2wbj_D 180 DHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 246 (279)
T ss_dssp SCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred CCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence 4 7999999999986542211 0 0 0122 125888877765 4789999999987653
No 360
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.52 E-value=1.9e-13 Score=153.97 Aligned_cols=185 Identities=15% Similarity=0.213 Sum_probs=117.9
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EE---c-------------cCCCcEEEEee--CCeEEEEEccCC
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KA---L-------------SAGSRIKTIND--FGFVILEINDVY 982 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~---i-------------~~~~~~~~~~~--~~~~~L~I~~~~ 982 (1884)
+..+.+.+|++++|.|.+.+.....+.|.|||.. .. + ....|+.+..+ ++.+.|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (232)
T 1dn0_B 7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT 86 (232)
T ss_dssp ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence 4567899999999999998422235789999842 21 1 01357776543 356789999999
Q ss_pred CCCCeEEEEEEE--cCCee----EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCce
Q psy2148 983 LRDSGLYTCKAT--NKHGE----ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVF 1056 (1884)
Q Consensus 983 ~~D~G~Y~C~a~--N~~G~----~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1056 (1884)
.+|+|.|.|.+. |..|. ....+.|.|...+ +.+|.+
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~--------------------------------------~~~P~v 128 (232)
T 1dn0_B 87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS--------------------------------------ASAPTL 128 (232)
T ss_dssp GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC--------------------------------------CBCCEE
T ss_pred cccCEEEEEEEecCCcCCchhhhcccceEEEEccCC--------------------------------------CCCCce
Confidence 999999999998 43121 2234578886421 023433
Q ss_pred eeecCCCcCcCCC-CcEEEEEEEeeCCCCCc-EEEEEE-CCEeccCCCceEEEeeCc----EEEEEEcccCc--CCcEEE
Q psy2148 1057 TSQLQDNLDVPEA-GKVHFDCRLEPKSDPTM-RIDWFF-NGRPFATGSRVKTVYDFG----FISLDMDYVYA--RDSGEY 1127 (1884)
Q Consensus 1057 ~~~~~~~~~v~~g-~~~~l~C~v~~~~~p~~-~v~W~k-~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~--~d~G~Y 1127 (1884)
...... ..+..| +.++|.|.+.+ ..|.+ .|.|++ ||+.+..........+++ ...|.|..... +|.|.|
T Consensus 129 ~~~~p~-~~~~~g~~~v~L~C~~~g-~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y 206 (232)
T 1dn0_B 129 FPLVSC-ENSPSDTSSVAVGCLAQD-FLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHV 206 (232)
T ss_dssp EEEECC-------CCSEEEEEEEEE-EBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEE
T ss_pred EEeccc-cccCCCCCcEEEEEEEEE-EeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeE
Confidence 321111 234578 99999999983 34665 999999 998875400000000112 24688988876 889999
Q ss_pred EEEEEcCCeeeEEEEEEEEe
Q psy2148 1128 ICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1128 ~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
+|.|.|..|.......+.|.
T Consensus 207 tC~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 207 VCKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp EEEEECTTCCEEEEEECCC-
T ss_pred EEEEEeCCCCcceeEecCCC
Confidence 99999999987666655543
No 361
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.52 E-value=1.8e-14 Score=162.11 Aligned_cols=177 Identities=11% Similarity=0.122 Sum_probs=119.0
Q ss_pred eeeecCCceeecCCCeEEEEEEEecc-CC-C-eEEEEeCCeec-CCCCCeEEEEeC----ceeEEEEcccccCCCeEEEE
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVEFDGD-PL-P-TIKWFREDFPI-TSSPDFQIHTFS----TKSILIMRQVFMEDSGVFAV 1712 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~-~i~W~~~~~~~-~~~~~~~~~~~~----~~~~L~i~~v~~~DsG~Y~C 1712 (1884)
.++..+....+.+|+.++|.|.+.|. |. | .|+|+++|..+ ...........+ ....|.|.++..+|+|.|.|
T Consensus 15 v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C 94 (231)
T 2w59_A 15 LYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTC 94 (231)
T ss_dssp EEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEE
T ss_pred EEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEE
Confidence 34466777778899999999999985 64 4 99999999877 322221111111 12469999999999999999
Q ss_pred EEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-C-CcEEEEEeCCEecCCCCCeE
Q psy2148 1713 IAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-K-PLDVYWLKNGKKIIPDIRYK 1790 (1884)
Q Consensus 1713 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p-~p~v~W~k~~~~l~~~~~~~ 1790 (1884)
.|.|..+... +.+.|..... ...+|.+...........|+.++|.|.+.|. | .+.|+|+|||..+..+....
T Consensus 95 ~~~~~~~~~~--~~~~v~~~~~----~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~ 168 (231)
T 2w59_A 95 TVQHEELPLP--LSKSVYRNTG----PTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVT 168 (231)
T ss_dssp EEECTTCSSC--EEEEECCCCS----CCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEE
T ss_pred EEEcCCCCCc--eEEEEecCCC----CCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCccccc
Confidence 9999876533 3344432100 0146766543322112335679999999995 5 37999999999986553111
Q ss_pred ---Ee---------ec-CC---eEEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1791 ---TL---------EE-DN---LFTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1791 ---~~---------~~-~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
.. .+ +. ...|.|.....+|.|.|+|.|.|....
T Consensus 169 ~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 169 TAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp CCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred CccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 11 12 22 246888888888899999999998764
No 362
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.52 E-value=6.6e-14 Score=162.46 Aligned_cols=181 Identities=14% Similarity=0.247 Sum_probs=122.4
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEee--CCEE------------ccCC----CcEEEEee-CCeEEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH--NGKA------------LSAG----SRIKTIND-FGFVIL 976 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~--~g~~------------i~~~----~~~~~~~~-~~~~~L 976 (1884)
.+.++..+..+.+.+|++++|.|.+. .+.+.|.|+| .+.. .... .|+.+..+ .+...|
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL 102 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPI---SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTL 102 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCB---TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeC---CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEE
Confidence 46677778889999999999999986 4667999999 2221 1111 56766542 346789
Q ss_pred EEccCCCCCCeEEEEEEEcC--CeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCC
Q psy2148 977 EINDVYLRDSGLYTCKATNK--HGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054 (1884)
Q Consensus 977 ~I~~~~~~D~G~Y~C~a~N~--~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1054 (1884)
.|.+++.+|+|.|+|.|.|. .+.......|.|....... .+|
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~------------------------------------~~P 146 (268)
T 3pl6_D 103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNV------------------------------------FPP 146 (268)
T ss_dssp EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGC------------------------------------BCC
T ss_pred EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccc------------------------------------cCC
Confidence 99999999999999999984 3444455677886422111 244
Q ss_pred ceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEE--E-----eeCc----EEEEEEcccCcC
Q psy2148 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKT--V-----YDFG----FISLDMDYVYAR 1122 (1884)
Q Consensus 1055 ~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~--~-----~~~~----~~~l~i~~~~~~ 1122 (1884)
.+.........+.+|+.++|.|.+.+ ..|.+ .|.|+|||+.+..+..... . ..++ ...|.|.....+
T Consensus 147 ~v~~~~~~~~~~~~g~~v~L~C~~~g-~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~ 225 (268)
T 3pl6_D 147 EVAVFEPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQ 225 (268)
T ss_dssp EEEEECCCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHS
T ss_pred ceEEeCCCcccccCCCceEEEEEECc-ccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhc
Confidence 44333223344556999999999983 23333 8999999999875422110 0 0111 235788887777
Q ss_pred C-cEEEEEEEEcCCe
Q psy2148 1123 D-SGEYICRATNKWG 1136 (1884)
Q Consensus 1123 d-~G~Y~C~a~n~~G 1136 (1884)
| +|.|+|.|.|...
T Consensus 226 d~~g~YtC~v~~~~l 240 (268)
T 3pl6_D 226 NPRNHFRCQVQFYGL 240 (268)
T ss_dssp CTTCEEEEEEEECCB
T ss_pred cCCCEEEEEEEcCCC
Confidence 7 9999999998754
No 363
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.51 E-value=8.2e-14 Score=129.42 Aligned_cols=89 Identities=25% Similarity=0.317 Sum_probs=80.2
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.+|.|+..++++++.+|++++|.|.+. + |++.|+|+|||.+|..+.++.+..+++.++|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~--~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~ 80 (93)
T 1waa_A 4 ALIEVEKPLYGVEVFVGETAHFEIELS--E-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 80 (93)
T ss_dssp CCCCEEECCCCEEEETTSCEEEEEEES--S-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEET
T ss_pred CCcEeeccCcceEEeCCCCEEEEEEEC--C-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEEC
Confidence 689999999999999999999999997 4 4468999999999999999999888888899999999999999999998
Q ss_pred cCCeeEEEEEEEEEEe
Q psy2148 995 NKHGEATTSCKLTVKG 1010 (1884)
Q Consensus 995 N~~G~~~~~~~l~V~~ 1010 (1884)
|. ..++.|+|.+
T Consensus 81 n~----~~sa~L~V~~ 92 (93)
T 1waa_A 81 NT----KSAANLKVKE 92 (93)
T ss_dssp TE----EEEEEEEEEC
T ss_pred CC----cEEEEEEEEc
Confidence 84 5678888864
No 364
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.51 E-value=2.7e-14 Score=164.69 Aligned_cols=189 Identities=17% Similarity=0.267 Sum_probs=108.8
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEE---ccC----C----------CcEEEE--eeCCeE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKA---LSA----G----------SRIKTI--NDFGFV 974 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~---i~~----~----------~~~~~~--~~~~~~ 974 (1884)
+|.+...+.++.+.+|++|+|.|.+. +.|.+.|.|+|. +.. +.. . .++... ...+..
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 79 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLA--EGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNL 79 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCC
T ss_pred ccccccCCceeEecCCCcEEEEEEEc--cCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeE
Confidence 46777888899999999999999998 567789999992 211 100 0 011111 122345
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCe---eEEEEEEEEEEeecccccc-cchhHhHhcchhhHHHHHHhhcccCcCCCCCCC
Q psy2148 975 ILEINDVYLRDSGLYTCKATNKHG---EATTSCKLTVKGRQGIDVE-PQVSAIFANATKNIQKLEEALYRKDELIPDEEK 1050 (1884)
Q Consensus 975 ~L~I~~~~~~D~G~Y~C~a~N~~G---~~~~~~~l~V~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1884)
.|.|.+++.+|+|.|.|.|.|..| .....+.|.|...+..+.. +..+ ...
T Consensus 80 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~--------------------------~~~ 133 (259)
T 3omz_A 80 RMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDA--------------------------AKK 133 (259)
T ss_dssp EEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-----------------------------------------
T ss_pred EEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCcccccccc--------------------------ccc
Confidence 799999999999999999999876 3445567888754221100 0000 000
Q ss_pred CCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECC--Eecc------------CCCceEEE--eeCcEEEE
Q psy2148 1051 PNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG--RPFA------------TGSRVKTV--YDFGFISL 1114 (1884)
Q Consensus 1051 ~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~--~~l~------------~~~~~~~~--~~~~~~~l 1114 (1884)
..+|.+.... ..+.+.+|++++|.|.+.+ ..|.+.+.|||++ ..+. ...++.+. .......|
T Consensus 134 ~~~~~v~~~p-~~~~v~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 211 (259)
T 3omz_A 134 DGAQKVTQAQ-SSVSMPVRKAVTLNCLYET-SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVAL 211 (259)
T ss_dssp ---CEEECCC-CCEEEETTCCEEECCEEEC-CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCE
T ss_pred cCCeeeEEeC-CEEEEcCCCCEEEEEECCC-ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEE
Confidence 0123333322 2367889999999998862 3478899999853 1110 01233332 11234569
Q ss_pred EEcccCcCCcEEEEEEEEcC
Q psy2148 1115 DMDYVYARDSGEYICRATNK 1134 (1884)
Q Consensus 1115 ~i~~~~~~d~G~Y~C~a~n~ 1134 (1884)
.|.+++.+|+|.|.|.|.+.
T Consensus 212 ~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 212 TISALQLEDSAKYFCALGES 231 (259)
T ss_dssp EESSCCGGGCSEEEEEEESC
T ss_pred EECCCChhHCEEEEEEEeCc
Confidence 99999999999999999853
No 365
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.50 E-value=2.9e-14 Score=160.49 Aligned_cols=182 Identities=13% Similarity=0.194 Sum_probs=119.1
Q ss_pred CCCeee-ecCCceeecCCCeEEEEEEEeeCCCCC--cEEEEeeCCEEc-cCCCcEEEEeeCC----eEEEEEccCCCCCC
Q psy2148 915 KAPEFL-TTPTDLTLAESTLAHFECRLTPTNDPS--MTVEWFHNGKAL-SAGSRIKTINDFG----FVILEINDVYLRDS 986 (1884)
Q Consensus 915 ~~p~~~-~~~~~~~v~~G~~v~l~C~v~~~~~P~--~~v~W~~~g~~i-~~~~~~~~~~~~~----~~~L~I~~~~~~D~ 986 (1884)
.+|.+. ..+....+.+|+.++|.|.+.+ ..|. ..|+|+++|..+ ...........++ .+.|.|.+++.+|+
T Consensus 11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g-~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~ 89 (231)
T 2w59_A 11 SPIQLYAIPPSPGELYISLDAKLRCLVVN-LPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSG 89 (231)
T ss_dssp -CCEEEEECCCHHHHHTSCCCEEEEEEEE-ESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CCCEEEEeCcChhhcccCCceEEEEEEeC-ccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCC
Confidence 456654 6677788899999999999985 2463 499999999887 4333222222222 24699999999999
Q ss_pred eEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCc
Q psy2148 987 GLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDV 1066 (1884)
Q Consensus 987 G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 1066 (1884)
|.|+|.|.|..+... +.+.|..... ...+|.+.........+
T Consensus 90 g~Y~C~~~~~~~~~~--~~~~v~~~~~------------------------------------~~~~P~v~v~~~~~~~~ 131 (231)
T 2w59_A 90 ERFTCTVQHEELPLP--LSKSVYRNTG------------------------------------PTTPPLIYPFAPHPEEL 131 (231)
T ss_dssp CCEEEEEECTTCSSC--EEEEECCCCS------------------------------------CCBCCEEEEECCCGGGG
T ss_pred CEEEEEEEcCCCCCc--eEEEEecCCC------------------------------------CCcCCEEEEeCCCHHHh
Confidence 999999999887532 3344431100 00234333222111122
Q ss_pred CCCCcEEEEEEEeeCCCC-CcEEEEEECCEeccCCCceE---EEe--------eC-c----EEEEEEcccCcCCcEEEEE
Q psy2148 1067 PEAGKVHFDCRLEPKSDP-TMRIDWFFNGRPFATGSRVK---TVY--------DF-G----FISLDMDYVYARDSGEYIC 1129 (1884)
Q Consensus 1067 ~~g~~~~l~C~v~~~~~p-~~~v~W~k~~~~l~~~~~~~---~~~--------~~-~----~~~l~i~~~~~~d~G~Y~C 1129 (1884)
.|+.++|.|.+.+. .| .+.|.|+|||+.+..+.... ... .+ + .+.|.|.....+|.|.|+|
T Consensus 132 -~~~~~~L~C~~~g~-~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC 209 (231)
T 2w59_A 132 -SLSRVTLSCLVRGF-RPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFAC 209 (231)
T ss_dssp -GSSEEEEEEEEEEE-BSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEE
T ss_pred -ccCceEEEEEEEec-cCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEE
Confidence 35679999999842 34 47999999999987654111 111 22 3 2468888888888999999
Q ss_pred EEEcCCee
Q psy2148 1130 RATNKWGT 1137 (1884)
Q Consensus 1130 ~a~n~~G~ 1137 (1884)
.|.|....
T Consensus 210 ~v~n~~l~ 217 (231)
T 2w59_A 210 MAVHEALP 217 (231)
T ss_dssp EEECTTST
T ss_pred EEEcCCCC
Confidence 99998653
No 366
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.50 E-value=1.3e-14 Score=160.68 Aligned_cols=176 Identities=10% Similarity=0.097 Sum_probs=108.5
Q ss_pred eeecCCcee-ecCCCeEEEEEEEeccC----CCeEEEEeCCeecCCCCCe-EEEEeCc----eeEEEEcccccCCCeEEE
Q psy2148 1642 FTKKIQPCR-AFEQDQARFEVEFDGDP----LPTIKWFREDFPITSSPDF-QIHTFST----KSILIMRQVFMEDSGVFA 1711 (1884)
Q Consensus 1642 ~~~~~~~~~-v~~G~~~~l~C~~~g~p----~~~i~W~~~~~~~~~~~~~-~~~~~~~----~~~L~i~~v~~~DsG~Y~ 1711 (1884)
++..+.... +.+|+++.|.|.+.|.| .+.|+|+|++..+...... .....++ ...|.|......|+|.|+
T Consensus 5 ~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~ 84 (207)
T 1l6x_A 5 FLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYK 84 (207)
T ss_dssp EEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEE
T ss_pred EEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEE
Confidence 344444333 37999999999999975 3499999999876543110 0111111 122444455556699999
Q ss_pred EEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCC-cEEEEEeCCEecCCCC--
Q psy2148 1712 VIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKP-LDVYWLKNGKKIIPDI-- 1787 (1884)
Q Consensus 1712 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~-p~v~W~k~~~~l~~~~-- 1787 (1884)
|.|.|..+.......+.+... ...+|.+...+.......|+.++|.|.+.| .|. +.|+|+|||..+....
T Consensus 85 C~a~n~~~~~~~~~~v~~~~~------~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~ 158 (207)
T 1l6x_A 85 CKVSNKALPAPIEKTISKAKG------QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTT 158 (207)
T ss_dssp EEEECTTSSSCEEEEECCCCS------CCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEEC
T ss_pred EEEEcCcCCcceEEEeccCCC------CCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCcccc
Confidence 999999876433333321000 015777765444332335667999999999 454 4999999999886432
Q ss_pred CeEEeecCCe---EEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1788 RYKTLEEDNL---FTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1788 ~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
++....++.. ..|.|.....+|.|.|+|.|.|....
T Consensus 159 ~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 159 PPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 1211222221 24556555556799999999998653
No 367
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.50 E-value=1.2e-13 Score=158.10 Aligned_cols=179 Identities=12% Similarity=0.145 Sum_probs=118.2
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCC--CcEEEEeeCC--EEcc-----------------CCCcEEEEee--CCeEEEE
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDP--SMTVEWFHNG--KALS-----------------AGSRIKTIND--FGFVILE 977 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~ 977 (1884)
..+..+.+.+|++|+|.|.+. +.| .+.|.|+|+. ..+. ...|+.+..+ .+...|.
T Consensus 11 ~~p~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 88 (261)
T 2xqy_G 11 QQPGAELVKPGASVKMSCKAS--GYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQ 88 (261)
T ss_dssp ECCSEEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred ECCCCEEEcCCCCEEEEEEeC--CcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEE
Confidence 345678899999999999998 444 5789999963 2210 1346766543 3567899
Q ss_pred EccCCCCCCeEEEEEEEcCCee---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCC
Q psy2148 978 INDVYLRDSGLYTCKATNKHGE---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPP 1054 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~~G~---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1054 (1884)
|.+++.+|+|.|.|.|.|..+. ....+.|.|...+ ..+|
T Consensus 89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--------------------------------------~~~P 130 (261)
T 2xqy_G 89 LSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK--------------------------------------TTAP 130 (261)
T ss_dssp ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--------------------------------------CBCC
T ss_pred EcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCC--------------------------------------CCCC
Confidence 9999999999999999997532 1123577776411 0234
Q ss_pred ceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeC---cEEEEEEcccCcCCcEEEEEE
Q psy2148 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDF---GFISLDMDYVYARDSGEYICR 1130 (1884)
Q Consensus 1055 ~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~ 1130 (1884)
.+...... ..+.+|+.++|.|.+.+ ..|.+ .|.|++++..+...........+ ....|.|.....+| |.|+|.
T Consensus 131 ~v~~~~p~-~~v~~g~~v~L~C~~~g-~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~ 207 (261)
T 2xqy_G 131 SVYPLAPV-CGDTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCN 207 (261)
T ss_dssp EEEEECCC-CC--CCSEEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEE
T ss_pred eEEEeCCC-ccccCCCcEEEEEEEEe-EeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEE
Confidence 33322211 34568999999999983 24655 99999999875321000011111 12469999888888 999999
Q ss_pred EEcCCeeeEEEE
Q psy2148 1131 ATNKWGTAMTKA 1142 (1884)
Q Consensus 1131 a~n~~G~~~~~~ 1142 (1884)
|.|.........
T Consensus 208 v~n~~~~~~~~~ 219 (261)
T 2xqy_G 208 VAHPASSTKVDK 219 (261)
T ss_dssp EEEGGGTEEEEE
T ss_pred EEECCCCccEEE
Confidence 999876544333
No 368
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.3e-14 Score=133.72 Aligned_cols=93 Identities=20% Similarity=0.303 Sum_probs=84.5
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.||.|...+.++++.+|+++.|.|.+ .|.+.|+|+|||.+|..+.++.+..++..++|.|.+++.+|+|.|+|.|.
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~v----~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 81 (100)
T 2yuz_A 6 SGLKILTPLTDQTVNLGKEICLKCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPD 81 (100)
T ss_dssp CCCCCSBCCCCEEEETTSCCCEEEEC----SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEES
T ss_pred CCCEEeccCCceEEcCCCCEEEEEEe----CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEc
Confidence 57899999999999999999999998 36678999999999999999999888888899999999999999999999
Q ss_pred cCCeeEEEEEEEEEEeecc
Q psy2148 995 NKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 995 N~~G~~~~~~~l~V~~~~~ 1013 (1884)
|. ..+.++.|.|.++|.
T Consensus 82 N~--~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 82 AY--NVTLPAKVHVISGPS 98 (100)
T ss_dssp SS--CCCEEEEEEEECCSC
T ss_pred CC--CeeEEEEEEEeCCCC
Confidence 98 567788999987653
No 369
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.49 E-value=2.7e-14 Score=160.93 Aligned_cols=179 Identities=11% Similarity=0.075 Sum_probs=117.6
Q ss_pred CCeeeecCCcee-ecCCCeEEEEEEEecc---CCC-eEEEEeCCeecCCCCCe-EEEEe----CceeEEEEcccccCCCe
Q psy2148 1639 PPVFTKKIQPCR-AFEQDQARFEVEFDGD---PLP-TIKWFREDFPITSSPDF-QIHTF----STKSILIMRQVFMEDSG 1708 (1884)
Q Consensus 1639 ~p~~~~~~~~~~-v~~G~~~~l~C~~~g~---p~~-~i~W~~~~~~~~~~~~~-~~~~~----~~~~~L~i~~v~~~DsG 1708 (1884)
|..++..+.... +.+|++++|.|.+.|. |.+ .|+|+|++..+...... ..... .....|.|.++..+|+|
T Consensus 16 P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g 95 (239)
T 1i1c_A 16 SSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGK 95 (239)
T ss_dssp -CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred CEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCC
Confidence 444555555554 7899999999999987 766 99999998765422100 00000 12357999999999999
Q ss_pred EEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCC-cEEEEEeCCEecCCC
Q psy2148 1709 VFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKP-LDVYWLKNGKKIIPD 1786 (1884)
Q Consensus 1709 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~-p~v~W~k~~~~l~~~ 1786 (1884)
.|.|.|.|..|.......+... . ....+|.+...+.......|+.++|.|.+.| +|. ..|+|+|||..+...
T Consensus 96 ~Y~C~~~~~~~~~~~~~~v~~~--~----~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~ 169 (239)
T 1i1c_A 96 TFKCKVNSGAFPAPIEKSISKP--E----GTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENY 169 (239)
T ss_dssp CEEEEEECSSSSSCEEEEECCC--S----SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE
T ss_pred eEEEEEecccCCCCcEEEEecC--C----CCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCc
Confidence 9999999998754222222110 0 0115788776555433345889999999998 555 489999999988543
Q ss_pred C--CeEEeecCCe---EEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1787 I--RYKTLEEDNL---FTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1787 ~--~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
. ++....++.. ..|.|.....+|.|.|+|.|.|....
T Consensus 170 ~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 170 KNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp EECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred eecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 2 2221222222 23555554445799999999998754
No 370
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.49 E-value=2.4e-13 Score=158.41 Aligned_cols=184 Identities=15% Similarity=0.241 Sum_probs=125.3
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc-----------------cCCCcEEEEee-CCeE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL-----------------SAGSRIKTIND-FGFV 974 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i-----------------~~~~~~~~~~~-~~~~ 974 (1884)
..+.+...+..+.+.+|++++|.|.+. +.|.+.|.|+|++ ..+ ....|+.+..+ .+..
T Consensus 23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 100 (279)
T 2wbj_D 23 GGAVVSQHPSWVISKSGTSVKIECRSL--DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLS 100 (279)
T ss_dssp CCCCEEEECSEEEEETTSCEEEEEEES--SSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEE
T ss_pred ccceEEeCCCeEEecCCCeEEEEEEeC--CCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEE
Confidence 356778888899999999999999997 6688899999963 111 01356766543 4567
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCe------eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCC
Q psy2148 975 ILEINDVYLRDSGLYTCKATNKHG------EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDE 1048 (1884)
Q Consensus 975 ~L~I~~~~~~D~G~Y~C~a~N~~G------~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1884)
.|.|.+++.+|+|.|+|.|.|..| .....+.|+|......
T Consensus 101 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~---------------------------------- 146 (279)
T 2wbj_D 101 TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKN---------------------------------- 146 (279)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGG----------------------------------
T ss_pred EEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCC----------------------------------
Confidence 899999999999999999999432 1123356777642110
Q ss_pred CCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceE---EE----eeCc----EEEEEE
Q psy2148 1049 EKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVK---TV----YDFG----FISLDM 1116 (1884)
Q Consensus 1049 ~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~---~~----~~~~----~~~l~i 1116 (1884)
..+|.+.........+.+|+.++|.|.+.+ ..|. +.|.|+|||+.+..+.... .. ..++ ...|.|
T Consensus 147 --~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i 223 (279)
T 2wbj_D 147 --VFPPEVAVFEPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRV 223 (279)
T ss_dssp --CBCCEEEEEECCHHHHHHHSCCEEEEEEEE-EBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEEC
T ss_pred --CCCCEEEEECCCcccccCCCceEEEEEEee-EcCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEE
Confidence 034544433222234557899999999983 2343 7999999999987653211 00 0222 235888
Q ss_pred cccCcC-CcEEEEEEEEcCCee
Q psy2148 1117 DYVYAR-DSGEYICRATNKWGT 1137 (1884)
Q Consensus 1117 ~~~~~~-d~G~Y~C~a~n~~G~ 1137 (1884)
...... |.|.|+|.|.|....
T Consensus 224 ~~~~~~d~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 224 SATFWQNPRNHFRCQVQFYGLS 245 (279)
T ss_dssp CSTTTTCTTCEEEEEEEECCBC
T ss_pred ChHHhccCCCEEEEEEEeCCCC
Confidence 877665 478899999997653
No 371
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.49 E-value=1.3e-13 Score=153.60 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=114.4
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEc----------------cCCCcEEEEee--CCeEEEEEccCC
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KAL----------------SAGSRIKTIND--FGFVILEINDVY 982 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i----------------~~~~~~~~~~~--~~~~~L~I~~~~ 982 (1884)
+.++.+.+|++++|.|.+.+...+.+.|.|+|+. ..+ ....|+.+..+ ++.+.|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 4667899999999999998432235789999852 221 01356766543 346789999999
Q ss_pred CCCCeEEEEEEEcCCee---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeee
Q psy2148 983 LRDSGLYTCKATNKHGE---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQ 1059 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G~---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1059 (1884)
.+|+|.|.|.+.|..|. ....+.|.|...+ +.+|.+...
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~--------------------------------------~~~P~i~~~ 128 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ--------------------------------------TTAPSVYPL 128 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSC--------------------------------------CBCCCEEEE
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCC--------------------------------------CCCCeEEec
Confidence 99999999999997532 1233577776311 123443322
Q ss_pred cCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeCcEEEE--EEcccCcCCcEEEEEEEEcCCe
Q psy2148 1060 LQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDFGFISL--DMDYVYARDSGEYICRATNKWG 1136 (1884)
Q Consensus 1060 ~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~~~~l--~i~~~~~~d~G~Y~C~a~n~~G 1136 (1884)
... ..+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+........ .+++...+ .+.....+| |.|+|.|.|..|
T Consensus 129 ~~~-~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~~~~~~-~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~ 204 (215)
T 1c5d_H 129 APG-CGDTTSSTVTLGCLVKG-YFPEPVTVTWNSGALSSDVHTFPAV-LQSGLYTLTSSVTSSTWPS-QTVTCNVAHPAS 204 (215)
T ss_dssp CCC-SSCCCCSSEEEEEEEEE-EBSSCCEEEEGGGTTCCSCCBCCCE-EETTEEEEEEEEEESSTTT-SCCEEEEEEGGG
T ss_pred cCC-hhhccCCcEEEEEEEee-eEcCCcEEEEccCCccCceEecCcc-cCCCCEEEEEEEecccCCC-CeEEEEEEeCCC
Confidence 212 34578999999999983 33766 9999999876532111111 12232221 123333356 999999999998
Q ss_pred eeEEEE
Q psy2148 1137 TAMTKA 1142 (1884)
Q Consensus 1137 ~~~~~~ 1142 (1884)
......
T Consensus 205 ~~~~~~ 210 (215)
T 1c5d_H 205 STKVDK 210 (215)
T ss_dssp TEEEEE
T ss_pred CccEEE
Confidence 765443
No 372
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.48 E-value=2.7e-13 Score=130.23 Aligned_cols=94 Identities=27% Similarity=0.405 Sum_probs=89.2
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.+|.|...+.+..+.+|+.+.|.|.+.|.|.|.|+|+|++..+..+.++.+...+....|.|.++..+|+|.|+|.|.|.
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 86 (103)
T 3qp3_A 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNY 86 (103)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeC
Confidence 57899999999999999999999999999999999999999999888998888888889999999999999999999999
Q ss_pred CeeEEEEEEEEEEe
Q psy2148 1821 AGEARCEAELVVQS 1834 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~ 1834 (1884)
.|..+.++.|.|.+
T Consensus 87 ~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 87 KGEASDYATLDVTG 100 (103)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred CCcEEEEEEEEEEC
Confidence 99999999999986
No 373
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.48 E-value=5.3e-13 Score=151.38 Aligned_cols=177 Identities=13% Similarity=0.226 Sum_probs=118.0
Q ss_pred eeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EE---c------------cCCCcEEEEee-CCeEEEEEcc
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KA---L------------SAGSRIKTIND-FGFVILEIND 980 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~---i------------~~~~~~~~~~~-~~~~~L~I~~ 980 (1884)
++..+.++.+.+|++|+|.|.+. .+.+.|.|+|++ .. + ....|+.+..+ .+...|.|.+
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~ 78 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT---NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILEL 78 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES---SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESS
T ss_pred cccCCCeeEEeCCCcEEEEEEeC---CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEec
Confidence 45567888999999999999985 256799999953 11 1 01356665432 4567899999
Q ss_pred CCCCCCeEEEEEEEcCCe-----eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCc
Q psy2148 981 VYLRDSGLYTCKATNKHG-----EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055 (1884)
Q Consensus 981 ~~~~D~G~Y~C~a~N~~G-----~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1055 (1884)
++.+|+|.|.|.+.|..+ .....+.|+|...... ..+|.
T Consensus 79 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~------------------------------------~~~P~ 122 (238)
T 1bec_A 79 ATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQ------------------------------------VTPPK 122 (238)
T ss_dssp CCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGG------------------------------------CBCCE
T ss_pred CCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCC------------------------------------CCCCc
Confidence 999999999999999742 1122346788642110 03455
Q ss_pred eeeecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceE---EEeeCcE----EEEEEcccCcCC-cEE
Q psy2148 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVK---TVYDFGF----ISLDMDYVYARD-SGE 1126 (1884)
Q Consensus 1056 ~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~---~~~~~~~----~~l~i~~~~~~d-~G~ 1126 (1884)
+.........+.+|+.++|.|.+.+ ..|. +.|.|+|||+.+..+.... ....++. ..|.|......| .|.
T Consensus 123 v~~~~~~~~~~~~g~~~~L~C~~~g-~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ 201 (238)
T 1bec_A 123 VSLFEPSKAEIANKQKATLVCLARG-FFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNH 201 (238)
T ss_dssp EEEECCCSTTCSSSCSCSEEEEEEE-EBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCE
T ss_pred eEEECCChHHcccCCceEEEEEEee-EeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCe
Confidence 5443333356678999999999983 2354 4999999999987653221 1223332 235555444434 688
Q ss_pred EEEEEEcCC
Q psy2148 1127 YICRATNKW 1135 (1884)
Q Consensus 1127 Y~C~a~n~~ 1135 (1884)
|+|.|.|..
T Consensus 202 ytC~v~~~~ 210 (238)
T 1bec_A 202 FRCQVQFHG 210 (238)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEcCC
Confidence 999999973
No 374
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.48 E-value=2.4e-13 Score=129.51 Aligned_cols=94 Identities=29% Similarity=0.408 Sum_probs=84.8
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEE-eeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI-NDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
.||.|...+.+..+.+|+.+.|.|.+. |.|.+.|+|+|+|..+....++.+. ..++.++|.|.+++.+|+|.|+|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA 81 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEE--EESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEE--EeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEE
Confidence 579999999999999999999999998 6788899999999999888777654 3566778999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEe
Q psy2148 994 TNKHGEATTSCKLTVKG 1010 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~ 1010 (1884)
.|..|..+..+.|.|.+
T Consensus 82 ~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 82 INIAGETSSHAFLLVQA 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCcEEEEEEEEEec
Confidence 99999999999999974
No 375
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.48 E-value=9.8e-14 Score=153.49 Aligned_cols=180 Identities=16% Similarity=0.289 Sum_probs=105.5
Q ss_pred Ceeee-cCCcee-ecCCCeEEEEEEEeeCCC--CCcEEEEeeCCEEccCCCc-EEEEeeCCe----EEEEEccCCCCCCe
Q psy2148 917 PEFLT-TPTDLT-LAESTLAHFECRLTPTND--PSMTVEWFHNGKALSAGSR-IKTINDFGF----VILEINDVYLRDSG 987 (1884)
Q Consensus 917 p~~~~-~~~~~~-v~~G~~v~l~C~v~~~~~--P~~~v~W~~~g~~i~~~~~-~~~~~~~~~----~~L~I~~~~~~D~G 987 (1884)
|.+.. ++.... +.+|++++|.|.+.+... |.+.|+|+|+|.++..... ......++. ..|.|...+.+|+|
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g 81 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK 81 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence 44443 333333 379999999999985321 2459999999988865321 111112222 12444444445599
Q ss_pred EEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcC
Q psy2148 988 LYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVP 1067 (1884)
Q Consensus 988 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 1067 (1884)
.|+|.|.|..|.......+... .. ...+|.+.........+
T Consensus 82 ~Y~C~a~n~~~~~~~~~~v~~~--~~------------------------------------~~~~P~v~~~~~~~~~~- 122 (207)
T 1l6x_A 82 EYKCKVSNKALPAPIEKTISKA--KG------------------------------------QPREPQVYTLPPSRDEL- 122 (207)
T ss_dssp CEEEEEECTTSSSCEEEEECCC--CS------------------------------------CCBCCEEEEECCCGGGG-
T ss_pred eEEEEEEcCcCCcceEEEeccC--CC------------------------------------CCcCCEEEEECCChHHh-
Confidence 9999999998864333222110 00 01344443332222223
Q ss_pred CCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceEE-EeeCcE----EEEEEcccCcCCcEEEEEEEEcCCe
Q psy2148 1068 EAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVKT-VYDFGF----ISLDMDYVYARDSGEYICRATNKWG 1136 (1884)
Q Consensus 1068 ~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~~-~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~G 1136 (1884)
.|+.+.|.|.+.+ ..|. +.|.|+|||..+........ ...++. ..|.|.....+|.|.|+|.|.|...
T Consensus 123 ~~~~~~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 123 TKNQVSLTCLVKG-FYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp GSSEEEEEEEEEE-EBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred cCCcEEEEEEEeC-eECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence 4666999999984 2343 59999999998864321111 122332 2355665555689999999999754
No 376
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.47 E-value=2.7e-13 Score=129.15 Aligned_cols=95 Identities=37% Similarity=0.630 Sum_probs=88.0
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
..+|.|...+.+..+.+|+.+.|.|.+. +.|.+.|.|+|+|..+..+.++.+..+++.++|.|.++..+|+|.|+|.|
T Consensus 4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 81 (99)
T 3puc_A 4 SSKPVIVTGLQDTTVSSDSVAKFAVKAT--GEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTV 81 (99)
T ss_dssp CEEEEEEECCCCEEEESSSCEEEEEEEE--EESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCCEEEecCccEEEeCCCcEEEEEEEE--ecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEE
Confidence 3578999999999999999999999998 67888999999999999999999888888889999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEe
Q psy2148 994 TNKHGEATTSCKLTVKG 1010 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~ 1010 (1884)
.|..|..+..+.|.|.+
T Consensus 82 ~n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 82 KNSAGSVSSSCKLTIKA 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EeCCCcEeEEEEEEEEe
Confidence 99999999999999863
No 377
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.47 E-value=6.9e-14 Score=157.65 Aligned_cols=181 Identities=14% Similarity=0.225 Sum_probs=112.4
Q ss_pred CCeeeecCCcee-ecCCCeEEEEEEEeeCC-CCCc-EEEEeeCCEEccCCCcE-EEEeeC----CeEEEEEccCCCCCCe
Q psy2148 916 APEFLTTPTDLT-LAESTLAHFECRLTPTN-DPSM-TVEWFHNGKALSAGSRI-KTINDF----GFVILEINDVYLRDSG 987 (1884)
Q Consensus 916 ~p~~~~~~~~~~-v~~G~~v~l~C~v~~~~-~P~~-~v~W~~~g~~i~~~~~~-~~~~~~----~~~~L~I~~~~~~D~G 987 (1884)
|..++.++.... +.+|++++|.|.+.+.. .|.+ .|+|+|++..+...... .....+ ....|.|.+++.+|+|
T Consensus 16 P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g 95 (239)
T 1i1c_A 16 SSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGK 95 (239)
T ss_dssp -CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred CEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCC
Confidence 344455555444 88999999999998531 1655 89999998776532110 001111 2347999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcC
Q psy2148 988 LYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVP 1067 (1884)
Q Consensus 988 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 1067 (1884)
.|+|.|.|..|....... |..... ...+|.+........ ..
T Consensus 96 ~Y~C~~~~~~~~~~~~~~--v~~~~~------------------------------------~~~~P~v~v~~~~~~-~~ 136 (239)
T 1i1c_A 96 TFKCKVNSGAFPAPIEKS--ISKPEG------------------------------------TPRGPQVYTMAPPKE-EM 136 (239)
T ss_dssp CEEEEEECSSSSSCEEEE--ECCCSS------------------------------------CCBCCEEEEECCCGG-GG
T ss_pred eEEEEEecccCCCCcEEE--EecCCC------------------------------------CCcCCEEEEECCChH-Hh
Confidence 999999999886422222 211000 013455444333322 23
Q ss_pred CCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceE-EEeeCcE----EEEEEcccCcCCcEEEEEEEEcCCe
Q psy2148 1068 EAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVK-TVYDFGF----ISLDMDYVYARDSGEYICRATNKWG 1136 (1884)
Q Consensus 1068 ~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~-~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~G 1136 (1884)
.|+.++|.|.+.+ ..|. +.|.|+|||+.+....... ....++. ..|.|.....+|.|.|+|.|.|..-
T Consensus 137 ~g~~~~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l 210 (239)
T 1i1c_A 137 TQSQVSITCMVKG-FYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL 210 (239)
T ss_dssp GSSEEEEEEEEEE-EBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred cCCcEEEEEEEee-eECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence 4889999999984 2444 5899999999986432111 1122332 2355555444579999999999864
No 378
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.47 E-value=1.8e-13 Score=154.98 Aligned_cols=182 Identities=10% Similarity=0.097 Sum_probs=122.8
Q ss_pred cCCceeecCCCeEEEEEEEeccCC----CeEEEEeCC--e---ec---C----------------CCCCeEEEEe--Cce
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDPL----PTIKWFRED--F---PI---T----------------SSPDFQIHTF--STK 1694 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p~----~~i~W~~~~--~---~~---~----------------~~~~~~~~~~--~~~ 1694 (1884)
.+..+.+.+|++++|.|.+.+.+. ..+.|+|.. . .+ . ...++.+... .+.
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 85 (239)
T 3tv3_H 6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL 85 (239)
T ss_dssp EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence 345678999999999999998763 489999842 1 11 0 1234544433 345
Q ss_pred eEEEEcccccCCCeEEEEEEEeCCc-------------eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEE
Q psy2148 1695 SILIMRQVFMEDSGVFAVIAENRGG-------------KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLAR 1761 (1884)
Q Consensus 1695 ~~L~i~~v~~~DsG~Y~C~a~n~~g-------------~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~ 1761 (1884)
.+|.|.+++.+|+|.|.|.+.+..+ .......|.|..... .+|.+...+....+..|+.++
T Consensus 86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~------~~P~v~~~~~~~~~~~g~~v~ 159 (239)
T 3tv3_H 86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAST------KGPSVFPLAPSSKSTSGGTAA 159 (239)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCC------BCCEEEEECCCCCC--TTEEE
T ss_pred EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCC------cCCEEEEECCChhhccCCcEE
Confidence 6799999999999999999987532 112234667753221 467777655555666799999
Q ss_pred EEEEEec-CCCc-EEEEEeCCEecCCCCCeEEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1762 FDAKISA-TKPL-DVYWLKNGKKIIPDIRYKTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1762 l~C~~~g-~p~p-~v~W~k~~~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
|.|.+.| .|.+ .|.|++++..+...........++ ...|+|.....+| |.|+|.|.|..+.......|.|.
T Consensus 160 l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 236 (239)
T 3tv3_H 160 LGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 236 (239)
T ss_dssp EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence 9999998 5644 589999997542111111111111 2368899988888 99999999999887776666553
No 379
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.47 E-value=2.2e-13 Score=132.03 Aligned_cols=98 Identities=28% Similarity=0.449 Sum_probs=89.0
Q ss_pred cCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 913 LGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 913 ~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
...||.|...+.++.+.+|+.+.|.|.+. +.|.+.|.|+|+|..+..+.++.+..+++.+.|.|.+++.+|+|.|+|.
T Consensus 10 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 87 (107)
T 3irg_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVL--GEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEE--EESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCCeeEcCCccEEEeCCCeEEEEEEEe--ecCCCEEEEEECCeECCCCCcEEEEeCCCEEEEEEccCCHHhCEEEEEE
Confidence 34689999999999999999999999998 6688899999999999999999888888888999999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeec
Q psy2148 993 ATNKHGEATTSCKLTVKGRQ 1012 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~ 1012 (1884)
|.|..|..+..+.|.|.++|
T Consensus 88 a~n~~g~~~~~~~l~V~~~P 107 (107)
T 3irg_B 88 ARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EEETTEEEEEEEEEEEEC--
T ss_pred EEcCCCcEEEEEEEEEEcCC
Confidence 99999999999999998653
No 380
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.46 E-value=7.2e-14 Score=126.30 Aligned_cols=82 Identities=18% Similarity=0.331 Sum_probs=72.6
Q ss_pred cCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCeeEE
Q psy2148 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEAT 1001 (1884)
Q Consensus 922 ~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 1001 (1884)
.+.++.+.+|+.++|.|.+. + |.|.|+|+|||.+|..+.++.+..+++.++|.|.+++.+|+|.|+|.|.| .+
T Consensus 2 ~lt~v~~~~G~~v~l~C~vs--~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~ 74 (84)
T 2lu7_A 2 HMTRVRSTPGGDLELVVHLS--G-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DS 74 (84)
T ss_dssp -CCCEEECTTSCEEEECCCS--C-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TC
T ss_pred CCeEEEEecCCCEEEEEEEC--C-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EE
Confidence 35788999999999999986 5 77789999999999999999999998889999999999999999999955 46
Q ss_pred EEEEEEEEe
Q psy2148 1002 TSCKLTVKG 1010 (1884)
Q Consensus 1002 ~~~~l~V~~ 1010 (1884)
.++.|+|.+
T Consensus 75 ~~a~l~V~e 83 (84)
T 2lu7_A 75 RIFLVSVEE 83 (84)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEEC
Confidence 678888864
No 381
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.46 E-value=3.7e-13 Score=154.11 Aligned_cols=184 Identities=11% Similarity=0.148 Sum_probs=120.2
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--E---Ec--------------cCCCcEEEEee--CCeEEEEEccC
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--K---AL--------------SAGSRIKTIND--FGFVILEINDV 981 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~---~i--------------~~~~~~~~~~~--~~~~~L~I~~~ 981 (1884)
+..+.+.+|++++|.|.+.+...+...+.|||.. . .+ ....|+.+..+ .+.+.|+|.++
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (253)
T 3liz_H 7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL 86 (253)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 4568899999999999998433446689999832 1 11 11246666543 35678999999
Q ss_pred CCCCCeEEEEEEEcC----CeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCcee
Q psy2148 982 YLRDSGLYTCKATNK----HGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFT 1057 (1884)
Q Consensus 982 ~~~D~G~Y~C~a~N~----~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1057 (1884)
+.+|+|.|.|.+.|. .+.....+.|.|.... ..+|.+.
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~~P~i~ 128 (253)
T 3liz_H 87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK--------------------------------------TTPPSVY 128 (253)
T ss_dssp CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC--------------------------------------CBCCEEE
T ss_pred ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC--------------------------------------CCCCeEE
Confidence 999999999999986 2333344577775211 0234443
Q ss_pred eecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeC---cEEEEEEcccCcCCcEEEEEEEEc
Q psy2148 1058 SQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDF---GFISLDMDYVYARDSGEYICRATN 1133 (1884)
Q Consensus 1058 ~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n 1133 (1884)
.... ...+..|+.++|.|.+.+ ..|.+ .|.|+++|..+...........+ ....|.|.....+| |.|+|.|.|
T Consensus 129 ~~~~-~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~ 205 (253)
T 3liz_H 129 PLAP-GSAAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAH 205 (253)
T ss_dssp EECC-------CCEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEE
T ss_pred EecC-CcccCCCCcEEEEEEEee-EeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEE
Confidence 2222 234567999999999984 25655 89999999743210000000111 12469999999999 999999999
Q ss_pred CCeeeEEEEEEEEe
Q psy2148 1134 KWGTAMTKAKVICK 1147 (1884)
Q Consensus 1134 ~~G~~~~~~~l~v~ 1147 (1884)
..+.......+.+.
T Consensus 206 ~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 206 PASSTKVDKKIVPR 219 (253)
T ss_dssp GGGTEEEEEECCCC
T ss_pred CCCCcceEEEecCc
Confidence 99987777766654
No 382
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.46 E-value=1.2e-13 Score=157.24 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=101.9
Q ss_pred CCceeecCCCeEEEEEEEeeCCCC--CcEEEEeeCC--EEc-----------------cCCCcEEEEee--CCeEEEEEc
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDP--SMTVEWFHNG--KAL-----------------SAGSRIKTIND--FGFVILEIN 979 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P--~~~v~W~~~g--~~i-----------------~~~~~~~~~~~--~~~~~L~I~ 979 (1884)
+..+.+.+|++|+|.|.+. +.| .+.|.|||.. ..+ ....|+.+..+ .+...|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (257)
T 3bn9_D 7 SGGGLVKPGGSLRLSCAAS--GFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMS 84 (257)
T ss_dssp ECCEEECTTCEEEEEEEEE--SSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEE
T ss_pred cCCEEEcCCCcEEEEEEec--cccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEEC
Confidence 4567899999999999998 444 5789999953 211 01356766554 456789999
Q ss_pred cCCCCCCeEEEEEEEcCCe----------e---EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCC
Q psy2148 980 DVYLRDSGLYTCKATNKHG----------E---ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIP 1046 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~G----------~---~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1884)
+++.+|+|.|.|.+.|..| . ....+.|.|...+.
T Consensus 85 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~--------------------------------- 131 (257)
T 3bn9_D 85 SLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAST--------------------------------- 131 (257)
T ss_dssp SCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCC---------------------------------
T ss_pred CCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCC---------------------------------
Confidence 9999999999999999865 1 11235777764110
Q ss_pred CCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCc-EEEEEECCEeccCCCceEEEeeCc----EEEEEEcccCc
Q psy2148 1047 DEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTM-RIDWFFNGRPFATGSRVKTVYDFG----FISLDMDYVYA 1121 (1884)
Q Consensus 1047 ~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~-~v~W~k~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~ 1121 (1884)
.+|.+..... ...+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+...........++ ...|.|.....
T Consensus 132 -----~~P~v~~~~p-~~~~~~g~~v~L~C~~~g-~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~ 204 (257)
T 3bn9_D 132 -----KGPSVFPLAP-SSKSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL 204 (257)
T ss_dssp -----BCCEECCCCC------------CCCEEEE-EBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC----
T ss_pred -----cCCcEEEecC-cccccCCCcEEEEEEEee-EECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEccccc
Confidence 2333322111 123467999999999983 34666 999999998753210000111222 24588888877
Q ss_pred CCcEEEEEEEEcCCeeeE
Q psy2148 1122 RDSGEYICRATNKWGTAM 1139 (1884)
Q Consensus 1122 ~d~G~Y~C~a~n~~G~~~ 1139 (1884)
+| |.|+|.|.|..+...
T Consensus 205 ~~-g~YtC~v~n~~~~~~ 221 (257)
T 3bn9_D 205 GT-QTYICNVNHKPSNTK 221 (257)
T ss_dssp ----CEEEEEEEGGGTEE
T ss_pred CC-CeEEEEEEecCCCcC
Confidence 78 999999999765443
No 383
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.46 E-value=5.3e-13 Score=127.07 Aligned_cols=94 Identities=32% Similarity=0.406 Sum_probs=85.8
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEe-ecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTL-EEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.+|.|...+.+..+.+|+.++|.|.+.|.|.|.|.|+|+|..+..+.++.+. ..++...|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 83 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence 5789999999999999999999999999999999999999999888776654 356677999999999999999999999
Q ss_pred CCeeEEEEEEEEEEe
Q psy2148 1820 NAGEARCEAELVVQS 1834 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~ 1834 (1884)
..|....++.|.|.+
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 84 IAGETSSHAFLLVQA 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEec
Confidence 999999999999975
No 384
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=127.33 Aligned_cols=87 Identities=14% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCeeeecCCcee--ecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 915 KAPEFLTTPTDLT--LAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 915 ~~p~~~~~~~~~~--v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
.||.|+.++.+.. +.+|+.+.|+|.+. + |.+.|+|+|||++|..+.++.+..+++.++|.|.+++.+|+|.|+|.
T Consensus 3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~--~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~ 79 (91)
T 2lvc_A 3 MPVHIVDPREHVFVHAITSECVMLACEVD--R-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCV 79 (91)
T ss_dssp CCCCCCBCCSCEEEECCTTCCEEEEEECS--C-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred CCcEEeccCCCeEEEEECCCcEEEEEEEC--C-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEE
Confidence 5777888777754 46899999999986 4 77789999999999999999999999999999999999999999999
Q ss_pred EEcCCeeEEEEEEEEE
Q psy2148 993 ATNKHGEATTSCKLTV 1008 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V 1008 (1884)
|.| .+.++.|+|
T Consensus 80 a~n----~~~~~~ltV 91 (91)
T 2lvc_A 80 AGD----ECAYFTVTI 91 (91)
T ss_dssp CSS----CEEEEEEEC
T ss_pred Ecc----eEEEEEEEC
Confidence 966 466677765
No 385
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.45 E-value=3e-13 Score=126.83 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=79.2
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
+|.|...+.++.+.+|+.+.|.|.+. |.|.|.|+|+|+| ..+....++ ....+...|.|.+++.+|+|.|+|.|
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~--g~P~p~i~W~k~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~D~G~Y~C~a 77 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLV--DAKSSTTSIFFPSAKRADSGNYKLKV 77 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEE--CCSSCEEEEECSTTTCBCSTTSEE--EEETTEEEEECTTBCGGGCEEEEEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEE--EcCCCEEEEEECCCCcccCCcEEE--EecCCEEEEEECCCChhcCEEEEEEE
Confidence 68898888999999999999999999 7899999999999 888766433 34455678999999999999999999
Q ss_pred EcCCeeEEEEEEEEEE
Q psy2148 994 TNKHGEATTSCKLTVK 1009 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~ 1009 (1884)
.|..|..+..+.|.|+
T Consensus 78 ~N~~G~~~~~~~l~V~ 93 (93)
T 1wit_A 78 KNELGEDEAIFEVIVQ 93 (93)
T ss_dssp EETTEEEEEEEEEEEC
T ss_pred EcCCCeEEEEEEEEEC
Confidence 9999999999998873
No 386
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.45 E-value=1.3e-13 Score=154.35 Aligned_cols=203 Identities=15% Similarity=0.215 Sum_probs=111.0
Q ss_pred eEEEEEEEcCCeeEEEEEEEEEEeeeccccCCCceeeccccccc-cCCCceEEEEEEEEEcCC--C-ceEEEEeeCCEee
Q psy2148 276 GIYTVKATNSKGSATTSGTLKCLERLFVNHNYPLFSLQFQHLSN-LSEGEIAHFEASLIPVGD--Q-TMTVEFLYNGKPI 351 (1884)
Q Consensus 276 G~Y~C~a~n~~g~~~~~~~l~V~~~l~v~~~~p~~~~~~~~~~~-v~~g~~~~l~c~~~~~g~--p-~~~i~W~k~g~~i 351 (1884)
|.|.|...|..+....... ..+|.+.+.++.... +..|+.++|.|.+.. .. | .++|+|+|||+++
T Consensus 1 ~~~~~~~~~~~~~c~~~~~----------~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g-~~p~P~~i~v~W~k~g~~l 69 (240)
T 4acp_A 1 GTKSCDKTHTCPPCPAPEL----------LGGPSVFLFPPKPKDTLMISRTPEVTCVVVD-VSHEDPEVKFNWYVDGVEV 69 (240)
T ss_dssp --------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEES-CCC--CCCEEEEEETTEEE
T ss_pred CceeeeeeecCCCCCcccc----------CCCCEEEEECcChHHhcccCCCcEEEEEEec-cccCCCccEEEEEECCccc
Confidence 7899999998764211110 123444444444444 678999999999743 23 3 4689999999998
Q ss_pred ccccceEE-EeeCC----eEEEEEcCCCCCCCEEEEEEEEcCCeeeEEEEEEEEeecCCCCCCceEeccCCccCccCCCe
Q psy2148 352 EASHRIRT-VHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 426 (1884)
Q Consensus 352 ~~~~~~~~-~~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~p~~~~~~~~~~~v~~G~~ 426 (1884)
........ ...++ ...|.|.....+|.|.|+|.|.|..+.......+... .....+|.+.........+ +|+.
T Consensus 70 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~-~~~~~~P~V~v~~~~~~~~-~g~~ 147 (240)
T 4acp_A 70 HNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA-KGQPREPQVYTLPPSRDEL-TKNQ 147 (240)
T ss_dssp CCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCC-CSCCBCCEEEEECCCGGGG-GSSE
T ss_pred CCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCcccccccccc-CCCCCCCEEEEECCChHHh-cCCc
Confidence 54321111 11122 2458887777778999999999987743333333211 1123677777655544333 4999
Q ss_pred EEEEEEEeeCCCCCCeEEEeeCCEEccccCc--EEEEecCCE---EEEEEcccCCCCcEEEEEEEEeCce
Q psy2148 427 AHFECTLTPVNDPELKVEWFHNGKPIFHKNR--VKMVSDFGF---VVMDIAYVQSHDSGEYVCRAWNNFI 491 (1884)
Q Consensus 427 v~L~C~~~~~~~p~~~i~W~k~g~~l~~~~~--~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~~ 491 (1884)
++|.|.+.++..+...++|+|+|..+..... .....++.. ..|.|.....+|.|.|+|+|.+...
T Consensus 148 ~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 148 VSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp EEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred eEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 9999999964333468999999998753211 111222222 3466665555678999999998753
No 387
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.45 E-value=6.8e-13 Score=126.36 Aligned_cols=94 Identities=27% Similarity=0.470 Sum_probs=88.6
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.+|.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|+|..+..+.++.+..++..+.|.|.++..+|+|.|+|.|.|.
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 84 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS 84 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence 47889999999999999999999999999999999999999999889999888888889999999999999999999999
Q ss_pred CeeEEEEEEEEEEe
Q psy2148 1821 AGEARCEAELVVQS 1834 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~ 1834 (1884)
.|....++.|.|..
T Consensus 85 ~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 85 AGSVSSSCKLTIKA 98 (99)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred CCcEeEEEEEEEEe
Confidence 99999999999874
No 388
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.44 E-value=9.5e-13 Score=149.27 Aligned_cols=177 Identities=16% Similarity=0.201 Sum_probs=119.3
Q ss_pred eeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--ee---c------------CCCCCeEEEEe-CceeEEEEcccc
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I------------TSSPDFQIHTF-STKSILIMRQVF 1703 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~---~------------~~~~~~~~~~~-~~~~~L~i~~v~ 1703 (1884)
++..+..+.+.+|+++.|.|.+. .+.+.+.|+|++ .. + ....++.+... ....+|.|.+++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 80 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence 34556778899999999999995 468899999864 11 1 01345555432 345789999999
Q ss_pred cCCCeEEEEEEEeCCc-----eEEEEEEEEEEecccCCCCCCCCCeEEe-ccCceEEcCCceEEEEEEEecC-CCc-EEE
Q psy2148 1704 MEDSGVFAVIAENRGG-----KAKCSANLVVEEKRQGGRGGVVPPSFLT-TISSAVINVGQLARFDAKISAT-KPL-DVY 1775 (1884)
Q Consensus 1704 ~~DsG~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~P~~~~-~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~ 1775 (1884)
.+|+|.|.|.+.|..+ .......|.|...... ..+|.+.. .+....+..|+.++|.|.+.|. |.+ .|.
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~----~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~ 156 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQ----VTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELS 156 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGG----CBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEE
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCC----CCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEE
Confidence 9999999999998742 1123356888753210 13677664 3444556689999999999985 755 999
Q ss_pred EEeCCEecCCCCCeE---EeecCCeE----EEEEccCCCCC-CEEEEEEEEeCCee
Q psy2148 1776 WLKNGKKIIPDIRYK---TLEEDNLF----TLLIIEAVVED-SGAYECVAMNNAGE 1823 (1884)
Q Consensus 1776 W~k~~~~l~~~~~~~---~~~~~~~~----~L~i~~~~~~d-~G~Y~C~a~N~~G~ 1823 (1884)
|+|||..+..+.+.. ....++.+ .|.|......| .|.|+|.|.|....
T Consensus 157 W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 212 (238)
T 1bec_A 157 WWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLS 212 (238)
T ss_dssp EEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCC
T ss_pred EEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCC
Confidence 999999986553211 11222222 34444444333 67999999998543
No 389
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.44 E-value=5.2e-13 Score=129.34 Aligned_cols=95 Identities=28% Similarity=0.419 Sum_probs=89.1
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.+|.|...+....+.+|+.++|.|.+.|.|.|.|.|+|++..+..+.++.+..++..+.|.|.++..+|+|.|+|.|.|.
T Consensus 12 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 91 (107)
T 3irg_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA 91 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEEeCCCEEEEEEccCCHHhCEEEEEEEEcC
Confidence 58999999999999999999999999999999999999999999888998888888889999999999999999999999
Q ss_pred CeeEEEEEEEEEEec
Q psy2148 1821 AGEARCEAELVVQSK 1835 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~~ 1835 (1884)
.|....++.|.|.++
T Consensus 92 ~g~~~~~~~l~V~~~ 106 (107)
T 3irg_B 92 AGEAYAAAAVTVLEP 106 (107)
T ss_dssp TEEEEEEEEEEEEC-
T ss_pred CCcEEEEEEEEEEcC
Confidence 999999999999873
No 390
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.44 E-value=4.6e-13 Score=151.27 Aligned_cols=181 Identities=12% Similarity=0.145 Sum_probs=118.1
Q ss_pred CCceeecCCCeEEEEEEEeccC--CCeE--EEEeCC--e---ec-----C-----------CCCCeEEEEe--CceeEEE
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGDP--LPTI--KWFRED--F---PI-----T-----------SSPDFQIHTF--STKSILI 1698 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~p--~~~i--~W~~~~--~---~~-----~-----------~~~~~~~~~~--~~~~~L~ 1698 (1884)
+..+.+.+|++++|.|.+.+.+ ...+ .|+|.. . .+ . ...++.+... .+..+|.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 86 (232)
T 3qhz_H 7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT 86 (232)
T ss_dssp ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence 4456789999999999998643 2445 999842 1 11 0 1135655543 2456899
Q ss_pred EcccccCCCeEEEEEEEeCC--------ceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-
Q psy2148 1699 MRQVFMEDSGVFAVIAENRG--------GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT- 1769 (1884)
Q Consensus 1699 i~~v~~~DsG~Y~C~a~n~~--------g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~- 1769 (1884)
|.+++.+|+|.|.|.+.+.. ........|.|.... ..+|.+...+....+..|+.++|.|.+.|.
T Consensus 87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~------~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~ 160 (232)
T 3qhz_H 87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYF 160 (232)
T ss_dssp ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC------CBCCEEEEECC-------CEEEEEEEEEEEB
T ss_pred ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC------CCCCEEEEecccccccCCCcEEEEEEEeeEe
Confidence 99999999999999998763 223344567776322 147777755555566789999999999984
Q ss_pred C-CcEEEEEeCCEecCCCCCeEEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1770 K-PLDVYWLKNGKKIIPDIRYKTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1770 p-~p~v~W~k~~~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
| ...+.|+++|..+...........++ ...|.|......| |.|+|.|.|..+.......|.+.
T Consensus 161 P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~ 228 (232)
T 3qhz_H 161 PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 228 (232)
T ss_dssp SSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred CCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence 4 34688999997542111100111111 1378899988888 99999999999887777766653
No 391
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.44 E-value=6.5e-13 Score=130.10 Aligned_cols=99 Identities=30% Similarity=0.483 Sum_probs=87.6
Q ss_pred cCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccC-CCcEEEEeeC-CeEEEEEccCCCCCCeEEE
Q psy2148 913 LGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA-GSRIKTINDF-GFVILEINDVYLRDSGLYT 990 (1884)
Q Consensus 913 ~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~-~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~ 990 (1884)
...+|.|+..+.++.+.+|+++.|.|.+. +.|.+.|.|+|+|..+.. ..++.+..++ +.++|.|.+++.+|+|.|+
T Consensus 12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~--g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 89 (116)
T 2kkq_A 12 HKRAPMFIYKPQSKKVLEGDSVKLECQIS--AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYT 89 (116)
T ss_dssp CCBCCCBSSCCCCEEEETTEEEEEEEEBC--CBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEE
T ss_pred CCCCCeEEeCCCcEEEeCCCcEEEEEEEe--ccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEE
Confidence 45689999999999999999999999998 778889999999999975 5677766543 5668999999999999999
Q ss_pred EEEEcCCeeEEEEEEEEEEeecc
Q psy2148 991 CKATNKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 991 C~a~N~~G~~~~~~~l~V~~~~~ 1013 (1884)
|.|.|..|..+..+.|.|..+|.
T Consensus 90 C~a~N~~G~~~~~~~l~V~~~p~ 112 (116)
T 2kkq_A 90 VSAVNEAGVTTCNTRLDVTARPN 112 (116)
T ss_dssp EEEEETTEEEEEEEEEEEECCSC
T ss_pred EEEEcCCCeEEEEEEEEEeCCCC
Confidence 99999999999999999987664
No 392
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.44 E-value=7.7e-13 Score=150.15 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=120.8
Q ss_pred ecCCceeecCCCeEEEEEEEec--cCCCeEEEEeCC--e---ec--------------CCCCCeEEEEe--CceeEEEEc
Q psy2148 1644 KKIQPCRAFEQDQARFEVEFDG--DPLPTIKWFRED--F---PI--------------TSSPDFQIHTF--STKSILIMR 1700 (1884)
Q Consensus 1644 ~~~~~~~v~~G~~~~l~C~~~g--~p~~~i~W~~~~--~---~~--------------~~~~~~~~~~~--~~~~~L~i~ 1700 (1884)
..+..+.+.+|++++|.|.+.+ .+...+.|+|.. . .+ ....|+.+... .+..+|+|.
T Consensus 4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 83 (248)
T 3u2s_H 4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN 83 (248)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 3456778999999999999986 345789999742 1 11 01245665543 345679999
Q ss_pred ccccCCCeEEEEEEEeCC----------------------ceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCc
Q psy2148 1701 QVFMEDSGVFAVIAENRG----------------------GKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQ 1758 (1884)
Q Consensus 1701 ~v~~~DsG~Y~C~a~n~~----------------------g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~ 1758 (1884)
+++.+|+|.|.|.+.+.. ........|.|..... .+|.+...+....+..|+
T Consensus 84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~------~~P~v~~~~~~~~~~~g~ 157 (248)
T 3u2s_H 84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAST------KGPSVFPLAPSSKSTSGG 157 (248)
T ss_dssp SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCC------BCCEEEEECCC------C
T ss_pred CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCC------CCCEEEEeCCCccccCCC
Confidence 999999999999998742 1122235677763221 467777665666667899
Q ss_pred eEEEEEEEec-CC-CcEEEEEeCCEecCCCCCeEEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2148 1759 LARFDAKISA-TK-PLDVYWLKNGKKIIPDIRYKTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1759 ~~~l~C~~~g-~p-~p~v~W~k~~~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
.++|.|.+.| .| .+.++|+++|..+...........++ ...|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 158 ~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 158 TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp EEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred cEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 9999999988 55 46799999987532111000111111 2368888888888 9999999999988777666655
Q ss_pred E
Q psy2148 1833 Q 1833 (1884)
Q Consensus 1833 ~ 1833 (1884)
.
T Consensus 237 ~ 237 (248)
T 3u2s_H 237 K 237 (248)
T ss_dssp -
T ss_pred C
Confidence 4
No 393
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.44 E-value=5.3e-13 Score=127.06 Aligned_cols=94 Identities=27% Similarity=0.472 Sum_probs=83.5
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCC-cEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS-RIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
.||.|...+.+..+.+|+.+.|.|.+. +.|.|.|.|+|+|..+..+. ++....+++.++|.|.+++.+|+|.|+|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 81 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKA 81 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEE--EESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEE--EcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence 578999999999999999999999998 67888999999999997654 455555667778999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEe
Q psy2148 994 TNKHGEATTSCKLTVKG 1010 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~ 1010 (1884)
.|..|..+..+.|.|.+
T Consensus 82 ~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 82 VNEYGARQCEARLEVRG 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCceeEEEEEEEEC
Confidence 99999999999999974
No 394
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=158.13 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=118.4
Q ss_pred eecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--ee---c---CC---------CC-CeEEEEeCceeEEEEccccc
Q psy2148 1643 TKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I---TS---------SP-DFQIHTFSTKSILIMRQVFM 1704 (1884)
Q Consensus 1643 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~---~---~~---------~~-~~~~~~~~~~~~L~i~~v~~ 1704 (1884)
+..+..+.+.+|++++|.|.+.+.+.+.+.|+|.. .. + .. .. ++.+....... |.|.+++.
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~ 83 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANM 83 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESC
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCCh
Confidence 34466788999999999999999999999999832 11 0 00 01 33333333333 99999999
Q ss_pred CCCeEEEEEEEeCCc------eEEEEEEEEEEecccCCCCCCCCCeEEecc-CceEEcCCceEEEEEEEec-CCCc-EEE
Q psy2148 1705 EDSGVFAVIAENRGG------KAKCSANLVVEEKRQGGRGGVVPPSFLTTI-SSAVINVGQLARFDAKISA-TKPL-DVY 1775 (1884)
Q Consensus 1705 ~DsG~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~-~~~~~~~G~~~~l~C~~~g-~p~p-~v~ 1775 (1884)
+|+|.|.|.+.+..+ .......|.|...... ..+|.+...+ ....+..|+.++|.|.+.| .|.+ .|+
T Consensus 84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~----~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~ 159 (253)
T 3to4_D 84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKN----VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 159 (253)
T ss_dssp SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTT----CBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCC----CCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEE
Confidence 999999999987644 2223457777642211 1467665433 3334445789999999999 7777 899
Q ss_pred EEeCCEecCCCCCeEEe--------ecCC---eEEEEEccCCCCC-CEEEEEEEEeCCe
Q psy2148 1776 WLKNGKKIIPDIRYKTL--------EEDN---LFTLLIIEAVVED-SGAYECVAMNNAG 1822 (1884)
Q Consensus 1776 W~k~~~~l~~~~~~~~~--------~~~~---~~~L~i~~~~~~d-~G~Y~C~a~N~~G 1822 (1884)
|+|+|..+......... .++. ...|.|.....+| .|.|+|.|.|..-
T Consensus 160 W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l 218 (253)
T 3to4_D 160 WWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 218 (253)
T ss_dssp EEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred EEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence 99999998653221100 1121 1378888887777 7799999999753
No 395
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.43 E-value=6.8e-13 Score=126.34 Aligned_cols=94 Identities=31% Similarity=0.546 Sum_probs=84.8
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCC-eEEeecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIR-YKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.||.|...+....+.+|+.++|.|.+.|.|.|.|.|+|++..+....+ +.+..+++.+.|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 83 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence 578999989999999999999999999999999999999999977654 5555566677999999999999999999999
Q ss_pred CCeeEEEEEEEEEEe
Q psy2148 1820 NAGEARCEAELVVQS 1834 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~ 1834 (1884)
..|....++.|.|.+
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 84 EYGARQCEARLEVRG 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCceeEEEEEEEEC
Confidence 999999999999975
No 396
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.43 E-value=5.1e-13 Score=125.20 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=79.3
Q ss_pred CCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCC--EecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1742 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNG--KKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1742 ~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~--~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
+|.|...+....+.+|+.+.|.|.+.|.|.|.|+|+|++ ..+.... .+........|.|.++..+|+|.|+|.|.|
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 79 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLKVKN 79 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence 688887788899999999999999999999999999999 8886553 333445567999999999999999999999
Q ss_pred CCeeEEEEEEEEEE
Q psy2148 1820 NAGEARCEAELVVQ 1833 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~ 1833 (1884)
..|..+.++.|.|+
T Consensus 80 ~~G~~~~~~~l~V~ 93 (93)
T 1wit_A 80 ELGEDEAIFEVIVQ 93 (93)
T ss_dssp TTEEEEEEEEEEEC
T ss_pred CCCeEEEEEEEEEC
Confidence 99999999999884
No 397
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.42 E-value=7.2e-13 Score=122.99 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=80.9
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.+|.|...+.+..+.+|++++|.|.+.+ |.|.|+|+|||.+|..+.++.+..++..+.|.|.++..+|+|.|+|.|.|.
T Consensus 4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~ 82 (93)
T 1waa_A 4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT 82 (93)
T ss_dssp CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence 4899999999999999999999999987 458899999999999999999988888889999999999999999999884
Q ss_pred CeeEEEEEEEEEEe
Q psy2148 1821 AGEARCEAELVVQS 1834 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~ 1834 (1884)
..++.|+|.+
T Consensus 83 ----~~sa~L~V~~ 92 (93)
T 1waa_A 83 ----KSAANLKVKE 92 (93)
T ss_dssp ----EEEEEEEEEC
T ss_pred ----cEEEEEEEEc
Confidence 4678888875
No 398
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.42 E-value=1.7e-12 Score=122.88 Aligned_cols=91 Identities=25% Similarity=0.427 Sum_probs=82.8
Q ss_pred eeeecCCceeecCCCeEEEEEEEeeCCC-CCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcC
Q psy2148 918 EFLTTPTDLTLAESTLAHFECRLTPTND-PSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNK 996 (1884)
Q Consensus 918 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~-P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 996 (1884)
.+...+.++.+.+|+++.|.|.+. +. |.+.|.|+|++..+..+.++.+...++.+.|.|.+++.+|+|.|+|.|.|.
T Consensus 3 ~v~~~~~~~~v~~G~~v~l~C~~~--g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (97)
T 2bk8_A 3 MVSGQIMHAVGEEGGHVKYVCKIE--NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVND 80 (97)
T ss_dssp CEECCCCCEEECTTCCEEEEEEEE--SCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred ceeccCcCEEEcCCCcEEEEEEEe--ccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECC
Confidence 455677889999999999999998 65 888999999999999999998877788889999999999999999999999
Q ss_pred CeeEEEEEEEEEEe
Q psy2148 997 HGEATTSCKLTVKG 1010 (1884)
Q Consensus 997 ~G~~~~~~~l~V~~ 1010 (1884)
.|..+..+.|.|.+
T Consensus 81 ~g~~~~~~~l~V~~ 94 (97)
T 2bk8_A 81 YGEDSSYAELFVKG 94 (97)
T ss_dssp SCEEEEEEEEEETT
T ss_pred CCeEeEEEEEEEEe
Confidence 99999999999863
No 399
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.3e-13 Score=128.67 Aligned_cols=92 Identities=23% Similarity=0.349 Sum_probs=84.9
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.||.|...+.+..+.+|++++|.|.+ .|.|.|+|+|||..|..+.++.+..++..+.|.|.++..+|+|.|+|.|.|.
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 83 (100)
T 2yuz_A 6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY 83 (100)
T ss_dssp CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence 47889999999999999999999999 8899999999999999999999988888889999999999999999999998
Q ss_pred CeeEEEEEEEEEEecC
Q psy2148 1821 AGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~~~ 1836 (1884)
..+.++.|.|.++|
T Consensus 84 --~~~~~a~L~V~~~P 97 (100)
T 2yuz_A 84 --NVTLPAKVHVISGP 97 (100)
T ss_dssp --CCCEEEEEEEECCS
T ss_pred --CeeEEEEEEEeCCC
Confidence 56788999998743
No 400
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.42 E-value=5e-13 Score=127.54 Aligned_cols=95 Identities=36% Similarity=0.556 Sum_probs=84.2
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeE-EeecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYK-TLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.||.|...+....+.+|+.++|.|.+.|.|.|.|.|+|+|..+....+.. ....++.+.|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 83 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN 83 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence 57888888889999999999999999999999999999999998775433 33455667999999999999999999999
Q ss_pred CCeeEEEEEEEEEEec
Q psy2148 1820 NAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~~ 1835 (1884)
..|..+.++.|.|.++
T Consensus 84 ~~g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 84 RAGEATFTVQLDVLAK 99 (100)
T ss_dssp TTEEEEEEEEEEEECC
T ss_pred CCCeEEEEEEEEEEec
Confidence 9999999999999864
No 401
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.41 E-value=3e-13 Score=177.00 Aligned_cols=165 Identities=16% Similarity=0.200 Sum_probs=122.7
Q ss_pred CceeecCCCeEEEEEEE-eccCCCeEEEEeCCeecCC------------CCCeEEEEeCceeEEEEcccccCCCeEEEEE
Q psy2148 1647 QPCRAFEQDQARFEVEF-DGDPLPTIKWFREDFPITS------------SPDFQIHTFSTKSILIMRQVFMEDSGVFAVI 1713 (1884)
Q Consensus 1647 ~~~~v~~G~~~~l~C~~-~g~p~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~ 1713 (1884)
....+.+|++++|.|.+ .|.|.+.|+|+|++..+.. ..+..+ ..+++|.|.+++.+|+|.|+|.
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~L~i~~v~~~D~G~Y~C~ 450 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV---LPNGSLFLPAVGIQDEGIFRCQ 450 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE---CTTSCEEESSCCGGGCEEEEEE
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE---cCCceEEEeccccccCeEEEEE
Confidence 34678899999999999 8899999999998763211 112222 2334799999999999999999
Q ss_pred EEeCCceE-EEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCce-EEEEEEEec-CCCcEEEEEeCCEecCCCC-Ce
Q psy2148 1714 AENRGGKA-KCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQL-ARFDAKISA-TKPLDVYWLKNGKKIIPDI-RY 1789 (1884)
Q Consensus 1714 a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~-~~l~C~~~g-~p~p~v~W~k~~~~l~~~~-~~ 1789 (1884)
+.|..|.. ...+.|.|..++ .+|.+.... ..+..|+. +.|.|.+.| .|.|.|+|+|||+.|.... ++
T Consensus 451 ~~n~~~~~~~~~~~l~V~~~~-------~~p~i~~~~--~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~ 521 (581)
T 3o3u_N 451 AMNRNGKETKSNYRVRVYQIP-------GKPEIVDSA--SELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGV 521 (581)
T ss_dssp EECTTSCEEEEEEEEEEEBCC-------CCCEEESCC--SEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTE
T ss_pred EEcCCCceeEEEEEEEEEcCC-------CCCEEEcCC--cccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeE
Confidence 99999887 788999998644 356555433 23555554 467999998 6999999999999997543 33
Q ss_pred EEee------cCC----eEEEEEccCCC-CCCEEEEEEEEeCCee
Q psy2148 1790 KTLE------EDN----LFTLLIIEAVV-EDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1790 ~~~~------~~~----~~~L~i~~~~~-~d~G~Y~C~a~N~~G~ 1823 (1884)
.+.. +.+ .++|+|.++.+ ++.|.|+|.|+|..+.
T Consensus 522 ~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 522 SVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred EEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 3211 111 34799999984 4588999999999753
No 402
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.41 E-value=8.5e-13 Score=151.10 Aligned_cols=179 Identities=15% Similarity=0.168 Sum_probs=121.3
Q ss_pred eeeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--ee---c------------CCCCCeEEEEe-CceeEEEEccc
Q psy2148 1641 VFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--FP---I------------TSSPDFQIHTF-STKSILIMRQV 1702 (1884)
Q Consensus 1641 ~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~~---~------------~~~~~~~~~~~-~~~~~L~i~~v 1702 (1884)
.++..+..+.+.+|++++|.|.+. .+.+.+.|+|+. .. + ....++.+... ....+|.|.++
T Consensus 5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v 83 (252)
T 1oga_E 5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA 83 (252)
T ss_dssp CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence 455667788999999999999986 468899999853 11 1 01234444321 34568999999
Q ss_pred ccCCCeEEEEEEEeCC---ceEEEEEEEEEEecccCCCCCCCCCeEEec-cCceEEcCCceEEEEEEEecC-CC-cEEEE
Q psy2148 1703 FMEDSGVFAVIAENRG---GKAKCSANLVVEEKRQGGRGGVVPPSFLTT-ISSAVINVGQLARFDAKISAT-KP-LDVYW 1776 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~---g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~-~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W 1776 (1884)
+.+|+|.|.|.+.|.. ........|.|...... ..+|.+... +....+..|+.++|.|.+.|. |. +.|.|
T Consensus 84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~----~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W 159 (252)
T 1oga_E 84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKN----VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 159 (252)
T ss_dssp CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGG----CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred ChhhCEEEEEEEecCCccceeECCCEEEEEecccCC----CCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEE
Confidence 9999999999999862 22223356777742110 147777653 444455679999999999985 75 49999
Q ss_pred EeCCEecCCCCCeE---E---e-ecCC----eEEEEEccCCCC-CCEEEEEEEEeCCeeE
Q psy2148 1777 LKNGKKIIPDIRYK---T---L-EEDN----LFTLLIIEAVVE-DSGAYECVAMNNAGEA 1824 (1884)
Q Consensus 1777 ~k~~~~l~~~~~~~---~---~-~~~~----~~~L~i~~~~~~-d~G~Y~C~a~N~~G~~ 1824 (1884)
+|||..+..+.... . . ..++ ...|.|...... |.|.|+|.|.|..+..
T Consensus 160 ~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 219 (252)
T 1oga_E 160 WVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 219 (252)
T ss_dssp EETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 99999886543211 0 0 1122 125788776653 6789999999987653
No 403
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=127.73 Aligned_cols=98 Identities=26% Similarity=0.432 Sum_probs=87.9
Q ss_pred CCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCC-CCCeEEeecC-CeEEEEEccCCCCCCEEEEEEE
Q psy2148 1740 VVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIP-DIRYKTLEED-NLFTLLIIEAVVEDSGAYECVA 1817 (1884)
Q Consensus 1740 ~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~-~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a 1817 (1884)
..+|.|...+.+..+.+|++++|.|.+.|.|.|.|.|+|++..+.. ..++.+..++ +.++|.|.++..+|+|.|+|.|
T Consensus 13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 92 (116)
T 2kkq_A 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA 92 (116)
T ss_dssp CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence 3689999999999999999999999999999999999999999875 4677776554 4568999999999999999999
Q ss_pred EeCCeeEEEEEEEEEEecCC
Q psy2148 1818 MNNAGEARCEAELVVQSKKA 1837 (1884)
Q Consensus 1818 ~N~~G~~~~~~~l~V~~~~~ 1837 (1884)
.|..|..+..+.|.|..+|.
T Consensus 93 ~N~~G~~~~~~~l~V~~~p~ 112 (116)
T 2kkq_A 93 VNEAGVTTCNTRLDVTARPN 112 (116)
T ss_dssp EETTEEEEEEEEEEEECCSC
T ss_pred EcCCCeEEEEEEEEEeCCCC
Confidence 99999999999999998653
No 404
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.41 E-value=7.7e-13 Score=126.24 Aligned_cols=95 Identities=26% Similarity=0.562 Sum_probs=82.7
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEE-EEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIK-TINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
.||.|...+.++.+.+|++++|.|.+. +.|.+.|.|+|+|..+....+.. ....++.+.|.|.+++.+|+|.|+|.|
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA 81 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECE--EESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEE--eeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence 578888888999999999999999998 67888999999999998776433 334456678999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEee
Q psy2148 994 TNKHGEATTSCKLTVKGR 1011 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~ 1011 (1884)
.|..|..+..+.|.|.+.
T Consensus 82 ~n~~g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 82 KNRAGEATFTVQLDVLAK 99 (100)
T ss_dssp EETTEEEEEEEEEEEECC
T ss_pred EcCCCeEEEEEEEEEEec
Confidence 999999999999999753
No 405
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.4e-13 Score=129.79 Aligned_cols=98 Identities=27% Similarity=0.440 Sum_probs=86.8
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccC-CCcEEEEee-CCeEEEEEccCCCCCCeEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA-GSRIKTIND-FGFVILEINDVYLRDSGLYTC 991 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~-~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C 991 (1884)
..+|.|...+.++.+.+|+.++|.|.+. +.|.+.|.|+|+|..+.. ..++.+... ++.+.|.|.+++.+|+|.|+|
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm2_A 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI 83 (110)
T ss_dssp SCCCCBSSCCCCEEEETTCCEEEEEEBC--CSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEE
T ss_pred CCCCEEEecCcCeEEeCCCeEEEEEEEE--ecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEE
Confidence 3689999999999999999999999998 778899999999999976 567776654 566789999999999999999
Q ss_pred EEEcCCeeEEEEEEEEEEeecc
Q psy2148 992 KATNKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 992 ~a~N~~G~~~~~~~l~V~~~~~ 1013 (1884)
.|.|..|..+..+.|.|...+.
T Consensus 84 ~a~N~~g~~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 84 MAANPQGRISCTGRLMVQAVNS 105 (110)
T ss_dssp EEECTTCCEEECCCEEEECCSC
T ss_pred EEEECCCeEEEEEEEEEECCCC
Confidence 9999999999999999987654
No 406
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.41 E-value=2.3e-12 Score=145.08 Aligned_cols=180 Identities=11% Similarity=0.150 Sum_probs=123.7
Q ss_pred CCceeecCCCeEEEEEEEec--cCCCeEEEEeCC--e---ec---C-----------CCCCeEEEEeC--ceeEEEEccc
Q psy2148 1646 IQPCRAFEQDQARFEVEFDG--DPLPTIKWFRED--F---PI---T-----------SSPDFQIHTFS--TKSILIMRQV 1702 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g--~p~~~i~W~~~~--~---~~---~-----------~~~~~~~~~~~--~~~~L~i~~v 1702 (1884)
+..+.+.+|++++|.|.+.+ .+...+.|+|.. . .+ . ...++.+.... ...+|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (230)
T 3n9g_H 7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL 86 (230)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence 34578999999999999986 345789999742 1 11 0 12456655443 3467999999
Q ss_pred ccCCCeEEEEEEEeCC-----ce---EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CC-Cc
Q psy2148 1703 FMEDSGVFAVIAENRG-----GK---AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TK-PL 1772 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~-----g~---~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p-~p 1772 (1884)
+.+|+|.|.|.+.+.. +. ......|.|...+. .+|.+........+..|+.++|.|.+.+ .| .+
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~------~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~ 160 (230)
T 3n9g_H 87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAST------KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 160 (230)
T ss_dssp CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCC------BCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCC
T ss_pred ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCC------CCCEEEecCCCccccCCCCEEEEEEEEeEECCCE
Confidence 9999999999998864 11 12345677763221 4677775555555678999999999988 45 45
Q ss_pred EEEEEeCCEecCCCCCe--EEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1773 DVYWLKNGKKIIPDIRY--KTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1773 ~v~W~k~~~~l~~~~~~--~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
.|.| ++..+...... .....++ ...|.|.....+| |.|+|.|.|..+.......|.|.+
T Consensus 161 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~ 225 (230)
T 3n9g_H 161 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS 225 (230)
T ss_dssp EEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred EEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence 7999 66555321100 0111111 2379999999999 999999999998877777777654
No 407
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=8.4e-13 Score=130.23 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=83.5
Q ss_pred CCCCeeee---cCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEE
Q psy2148 914 GKAPEFLT---TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYT 990 (1884)
Q Consensus 914 ~~~p~~~~---~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 990 (1884)
..+|.|.. ....+.+.+|+.+.|.|.+. |.|.|.|+|+|+|..+. ..++.+...++...|.|.+++.+|+|.|+
T Consensus 19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~--g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 95 (118)
T 2e7c_A 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ--GKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYE 95 (118)
T ss_dssp SEEEEECCCTTTSSCEEEESSSCEEEEEEEE--EESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEE
T ss_pred ccCCeEecCcccCCCEEEECCCEEEEEEEEc--cCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEE
Confidence 45788864 35678999999999999998 67888999999999997 46666766677778999999999999999
Q ss_pred EEEEcCCeeEEEEEEEEEEeec
Q psy2148 991 CKATNKHGEATTSCKLTVKGRQ 1012 (1884)
Q Consensus 991 C~a~N~~G~~~~~~~l~V~~~~ 1012 (1884)
|.|.|..|..+..+.|.|.++|
T Consensus 96 C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 96 LSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp EEEECSSCEECCEEEEEEECCC
T ss_pred EEEEeCCCeEEEEEEEEEEcCC
Confidence 9999999999999999998765
No 408
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.40 E-value=1.6e-12 Score=147.19 Aligned_cols=183 Identities=15% Similarity=0.191 Sum_probs=117.0
Q ss_pred CCceeecCCCeEEEEEEEeeCCCC--CcEEEEeeCC--E---Ec---c----------------CCCcEEEEee--CCeE
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDP--SMTVEWFHNG--K---AL---S----------------AGSRIKTIND--FGFV 974 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P--~~~v~W~~~g--~---~i---~----------------~~~~~~~~~~--~~~~ 974 (1884)
+..+.+.+|++|+|.|.+.+...+ ...+.|||.. . .+ . ...|+.+..+ .+.+
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 86 (239)
T 3tv3_H 7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV 86 (239)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence 456789999999999999843222 4589999832 1 11 1 1246665543 4567
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCe-------------eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhccc
Q psy2148 975 ILEINDVYLRDSGLYTCKATNKHG-------------EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRK 1041 (1884)
Q Consensus 975 ~L~I~~~~~~D~G~Y~C~a~N~~G-------------~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1884)
.|.|.+++.+|+|.|.|.+.|..| .......|.|...+
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~----------------------------- 137 (239)
T 3tv3_H 87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAS----------------------------- 137 (239)
T ss_dssp EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCC-----------------------------
T ss_pred EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCC-----------------------------
Confidence 899999999999999999987632 11122356664211
Q ss_pred CcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCC-CcEEEEEECCEeccCCCceEEEeeCc----EEEEEE
Q psy2148 1042 DELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDP-TMRIDWFFNGRPFATGSRVKTVYDFG----FISLDM 1116 (1884)
Q Consensus 1042 ~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p-~~~v~W~k~~~~l~~~~~~~~~~~~~----~~~l~i 1116 (1884)
+.+|.+...... ..+..|+.++|.|.+.+. .| ...+.|+++|..+...........++ ...|.|
T Consensus 138 ---------~~~P~v~~~~~~-~~~~~g~~v~l~C~~~~~-~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i 206 (239)
T 3tv3_H 138 ---------TKGPSVFPLAPS-SKSTSGGTAALGCLVKDY-FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV 206 (239)
T ss_dssp ---------CBCCEEEEECCC-CCC--TTEEEEEEEEEEE-BSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEE
T ss_pred ---------CcCCEEEEECCC-hhhccCCcEEEEEEEeeE-eCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEE
Confidence 134444322222 445679999999999852 34 34689999997542111101111122 246889
Q ss_pred cccCcCCcEEEEEEEEcCCeeeEEEEEEEE
Q psy2148 1117 DYVYARDSGEYICRATNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1117 ~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v 1146 (1884)
.....+| |.|+|.|.|..+.......|.+
T Consensus 207 ~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 207 PSSSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp EGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred chhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 9888888 9999999999887666665543
No 409
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.40 E-value=3.8e-13 Score=151.31 Aligned_cols=178 Identities=16% Similarity=0.224 Sum_probs=116.4
Q ss_pred eeecCCceeecCCCeEEEEEEEecc--CCCeEEEEeCC--ee---cC-------------CCCCeEEEEeC--ceeEEEE
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--FP---IT-------------SSPDFQIHTFS--TKSILIM 1699 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~--p~~~i~W~~~~--~~---~~-------------~~~~~~~~~~~--~~~~L~i 1699 (1884)
+...+..+.+.+|++++|.|.+.+. +.+.+.|+|.. .. +. ...++.+.... +..+|.|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 3445677889999999999999875 67899999853 11 10 12344444322 4568999
Q ss_pred cccccCCCeEEEEEEEeC--Cc--eEEEEEEEEEEecccCCCCCC--CCCeEEeccCceEEcCCceEEEEEEEecC-CC-
Q psy2148 1700 RQVFMEDSGVFAVIAENR--GG--KAKCSANLVVEEKRQGGRGGV--VPPSFLTTISSAVINVGQLARFDAKISAT-KP- 1771 (1884)
Q Consensus 1700 ~~v~~~DsG~Y~C~a~n~--~g--~~~~~~~l~V~~~~~~~~~~~--~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~- 1771 (1884)
.+++.+|+|.|.|.+.+. .. .......|.|...... .... ..|.+.. +....+..|+.++|.|.+.|. |.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~-l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~ 161 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKR-LDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDV 161 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTT-CCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCC
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEeccccc-CcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCC
Confidence 999999999999999884 11 1223457888731100 0000 1223332 444455679999999999985 75
Q ss_pred cEEEEEe-CCEecCCCCCeEEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1772 LDVYWLK-NGKKIIPDIRYKTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1772 p~v~W~k-~~~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
+.|+|++ +|..+..+....+...++ ...|.|..... | |.|+|.|.|..+.
T Consensus 162 ~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~ 216 (230)
T 1ypz_F 162 IRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK 216 (230)
T ss_dssp CEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred eEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence 5999999 887775331111112222 23688988776 4 9999999999875
No 410
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=124.57 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=80.2
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCC----------cEEEEeeCCeEEEEEccCCCC
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS----------RIKTINDFGFVILEINDVYLR 984 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~----------~~~~~~~~~~~~L~I~~~~~~ 984 (1884)
.+|.|+..+++..+.+|+.+.|+|.++ + .+.++|+|||++|..+. ++.+..++..++|.|.+++.+
T Consensus 7 p~~~~~~~l~d~~v~eG~~a~f~C~vs--~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~ 82 (112)
T 2e6q_A 7 GTARLVAGLEDVQVYDGEDAVFSLDLS--T--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ 82 (112)
T ss_dssp SCCCEEECCCCEEEETTCEEEEEEEES--S--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCST
T ss_pred CCcEEecCCCCeEEcCCCcEEEEEEEC--C--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHH
Confidence 468899999999999999999999998 4 55799999999999887 999988888899999999999
Q ss_pred CCeEEEEEEEcCCeeEEEEEEEEEEeecc
Q psy2148 985 DSGLYTCKATNKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 985 D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 1013 (1884)
|+|.|+|...+ ....++.|+|.++|.
T Consensus 83 D~G~Y~~~~~~---~~~ssA~L~V~~~p~ 108 (112)
T 2e6q_A 83 DSGALVGFSCP---GVQDSAALTIQESSG 108 (112)
T ss_dssp TCSEEEEEEET---TEEEEEEEEEECSSC
T ss_pred HCccEEEEEEC---CeeEEEEEEEeCCCc
Confidence 99999774333 456789999997664
No 411
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.40 E-value=1.2e-12 Score=125.00 Aligned_cols=94 Identities=24% Similarity=0.493 Sum_probs=84.3
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEcc--CCCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALS--AGSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
.||.|...+.++.+.+|+.+.|.|.+. +.|.|.|.|+|+|..+. ...++.+...++..+|.|.+++.+|+|.|+|.
T Consensus 4 ~pP~i~~~~~~~~~~~G~~~~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 81 (100)
T 3irg_A 4 IPPKIEALPSDISIDEGKVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLS 81 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEE--EESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeeecCCCcEEEcCCCcEEEEEEEE--EcCCCceEEEECCEEeecCCCCEEEEEecCCEEEEEEeecCcccCEEEEEE
Confidence 578888888999999999999999998 66888999999999996 45678887777778999999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEe
Q psy2148 993 ATNKHGEATTSCKLTVKG 1010 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~ 1010 (1884)
|.|..|..+..+.|.|.+
T Consensus 82 a~n~~g~~~~~~~l~V~~ 99 (100)
T 3irg_A 82 LGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEeCCCcEEEEEEEEEEe
Confidence 999999999999999863
No 412
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.39 E-value=1.5e-12 Score=124.43 Aligned_cols=94 Identities=23% Similarity=0.407 Sum_probs=85.8
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCC--CCCeEEeecCCeEEEEEccCCCCCCEEEEEEEE
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIP--DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAM 1818 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 1818 (1884)
.||.|...+....+.+|+.+.|.|.+.|.|.|.|.|+|++..+.. ..++.+...+....|.|.++..+|+|.|+|.|.
T Consensus 4 ~pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 83 (100)
T 3irg_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEecCCEEEEEEeecCcccCEEEEEEEE
Confidence 578888888899999999999999999999999999999999863 457888877777899999999999999999999
Q ss_pred eCCeeEEEEEEEEEEe
Q psy2148 1819 NNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1819 N~~G~~~~~~~l~V~~ 1834 (1884)
|..|..+..+.|.|.+
T Consensus 84 n~~g~~~~~~~l~V~~ 99 (100)
T 3irg_A 84 NEFGSDSATVNIHIRS 99 (100)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred eCCCcEEEEEEEEEEe
Confidence 9999999999999874
No 413
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=6.2e-13 Score=131.25 Aligned_cols=110 Identities=25% Similarity=0.345 Sum_probs=93.9
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCC-CCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIP-DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.||.|...+.+..+.+|+.++|.|.+.|.|.|.|.|+|+|..+.. ..++.+..++ .|.|.++..+|+|.|+|.|.|
T Consensus 7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n 83 (118)
T 2eo9_A 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIAST 83 (118)
T ss_dssp CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEEC
T ss_pred CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEEc
Confidence 689999889999999999999999999999999999999999865 4567666555 899999999999999999999
Q ss_pred CCeeEEEEEEEEEEecCCCCCCCCCCCCcccCCCCCeeeccCcceeccCCC
Q psy2148 1820 NAGEARCEAELVVQSKKAPGKQAPAPGAAVAQDEAPTVAEPLKDQNVKEGS 1870 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~ 1870 (1884)
..|....++.|.|.+.+. |.+...+.+..+.+|.
T Consensus 84 ~~g~~~~~~~l~V~~~~~-----------------p~~~~~~~~~~~~~G~ 117 (118)
T 2eo9_A 84 PSGEATWSAYIEVQEFGV-----------------PVQPPRPTDPNLIPSA 117 (118)
T ss_dssp SSCEEEEECCEEEECCSC-----------------CCCCCCCCCCCCCCCC
T ss_pred CCCcEEEEEEEEEEeCCC-----------------CccCCCCCCCccCCCC
Confidence 999999999999997542 4455556666666664
No 414
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.39 E-value=4.8e-13 Score=149.86 Aligned_cols=179 Identities=11% Similarity=0.074 Sum_probs=116.0
Q ss_pred CCCeeeecCCcee-ecCCCeEEEEEEEeccC----CCeEEEEeCCeecCCCCCeEEEE--e---CceeEEEEcccccCCC
Q psy2148 1638 KPPVFTKKIQPCR-AFEQDQARFEVEFDGDP----LPTIKWFREDFPITSSPDFQIHT--F---STKSILIMRQVFMEDS 1707 (1884)
Q Consensus 1638 ~~p~~~~~~~~~~-v~~G~~~~l~C~~~g~p----~~~i~W~~~~~~~~~~~~~~~~~--~---~~~~~L~i~~v~~~Ds 1707 (1884)
.|..++..+.... +..|+.+.|.|.+.|.+ ...|+|+|+|..+.......... . ...+.|.|.....+|.
T Consensus 22 ~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~ 101 (240)
T 4acp_A 22 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG 101 (240)
T ss_dssp -CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHT
T ss_pred CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCC
Confidence 4556666666666 66799999999999964 34899999999875431110000 0 1124699998888899
Q ss_pred eEEEEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-EEEEEeCCEecCC
Q psy2148 1708 GVFAVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-DVYWLKNGKKIIP 1785 (1884)
Q Consensus 1708 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~k~~~~l~~ 1785 (1884)
|.|.|.|.|..+.......+..... ...+|.+...+.......|+.++|.|.+.| +|.+ .|.|+|||..+..
T Consensus 102 ~~YtC~v~h~~~~~~~~~~i~~~~~------~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~ 175 (240)
T 4acp_A 102 KEYKCKVSNKALPAPIEKTISKAKG------QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN 175 (240)
T ss_dssp CCEEEEEECC----CEEEEECCCCS------CCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSS
T ss_pred CEEEEEEEcCCCCccccccccccCC------CCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCC
Confidence 9999999998764322222221000 015788876655544445999999999999 6664 8999999998753
Q ss_pred CC--CeEEeecCC---eEEEEEccCCCCCCEEEEEEEEeCCe
Q psy2148 1786 DI--RYKTLEEDN---LFTLLIIEAVVEDSGAYECVAMNNAG 1822 (1884)
Q Consensus 1786 ~~--~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G 1822 (1884)
.. ......++. ...|.|......|.|.|+|.|.|..-
T Consensus 176 ~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 176 YKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp EEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred cCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 21 111111222 23566666655678999999999863
No 415
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.39 E-value=3.7e-13 Score=129.29 Aligned_cols=94 Identities=29% Similarity=0.467 Sum_probs=86.9
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
..+|.|+..+.++.+.+|+++.|.|.+. |.|.|.|.|+|+|..+..+.++.+.......+|.|.+++.+|+|.|+|.|
T Consensus 12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~--g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 89 (106)
T 1nct_A 12 TLAARILTKPRSMTVYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVV 89 (106)
T ss_dssp SCCCEEEECCCCEEESSSSCEECCEEEE--CSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECC
T ss_pred CCCCEEEECCCCEEEeCCCcEEEEEEEE--EcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEE
Confidence 4689999999999999999999999998 77888999999999999888998887767779999999999999999999
Q ss_pred EcCCeeEEEEEEEEEE
Q psy2148 994 TNKHGEATTSCKLTVK 1009 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~ 1009 (1884)
.|..|..+..+.|.|.
T Consensus 90 ~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 90 ENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp BCSSCBCCEEEEEEEC
T ss_pred EeCCCeEEEEEEEEEE
Confidence 9999999999999885
No 416
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.3e-13 Score=128.88 Aligned_cols=98 Identities=26% Similarity=0.491 Sum_probs=87.4
Q ss_pred CCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCC-CCCeEEeec-CCeEEEEEccCCCCCCEEEEEEE
Q psy2148 1740 VVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIP-DIRYKTLEE-DNLFTLLIIEAVVEDSGAYECVA 1817 (1884)
Q Consensus 1740 ~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~-~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a 1817 (1884)
..+|.|...+....+.+|+.++|.|.+.|.|.|.|.|+|++..+.. ..++.+... .+.+.|.|.++..+|+|.|+|.|
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 85 (110)
T 2dm2_A 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA 85 (110)
T ss_dssp SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence 3689999888999999999999999999999999999999999876 467776654 45568999999999999999999
Q ss_pred EeCCeeEEEEEEEEEEecCC
Q psy2148 1818 MNNAGEARCEAELVVQSKKA 1837 (1884)
Q Consensus 1818 ~N~~G~~~~~~~l~V~~~~~ 1837 (1884)
.|..|..+..+.|.|.+.+.
T Consensus 86 ~N~~g~~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 86 ANPQGRISCTGRLMVQAVNS 105 (110)
T ss_dssp ECTTCCEEECCCEEEECCSC
T ss_pred EECCCeEEEEEEEEEECCCC
Confidence 99999999999999998654
No 417
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.39 E-value=5.4e-13 Score=128.98 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=77.0
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeC-CCCCcEEEEeeCCE-Ecc--CCCcEEEEee--C----CeEEEEEccCCCCCC
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPT-NDPSMTVEWFHNGK-ALS--AGSRIKTIND--F----GFVILEINDVYLRDS 986 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~-~~P~~~v~W~~~g~-~i~--~~~~~~~~~~--~----~~~~L~I~~~~~~D~ 986 (1884)
|.|+..|+++++.+|++++|.|.+.+. +.|.|.|+|||++. ++. .+.++.+... . ..+.|.|.+++.+|+
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 678889999999999999999999843 24899999999752 121 2455555321 1 246899999999999
Q ss_pred eEEEEEEEcCCeeEEEEEEEEEEe
Q psy2148 987 GLYTCKATNKHGEATTSCKLTVKG 1010 (1884)
Q Consensus 987 G~Y~C~a~N~~G~~~~~~~l~V~~ 1010 (1884)
|+|+|.|+|..|..++.+.|+|..
T Consensus 88 G~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 88 GNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp EEEEEEEECSSCEEEECCEEEEEC
T ss_pred EEEEEEEEeCCCcEEEEEEEEEEe
Confidence 999999999999999999999998
No 418
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.38 E-value=1.6e-12 Score=146.79 Aligned_cols=184 Identities=14% Similarity=0.200 Sum_probs=113.9
Q ss_pred CCceeecCCCeEEEEEEEeeCC--CCCcEEEEeeCC--E---Ec-----c-----------CCCcEEEEee--CCeEEEE
Q psy2148 923 PTDLTLAESTLAHFECRLTPTN--DPSMTVEWFHNG--K---AL-----S-----------AGSRIKTIND--FGFVILE 977 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~--~P~~~v~W~~~g--~---~i-----~-----------~~~~~~~~~~--~~~~~L~ 977 (1884)
+..+.+.+|++|+|.|.+.+.. .+...|.|||.. . .+ . ...|+.+..+ .+.+.|.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 86 (232)
T 3qhz_H 7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT 86 (232)
T ss_dssp ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence 3457899999999999997421 233445999832 1 11 0 1246666544 3667899
Q ss_pred EccCCCCCCeEEEEEEEcCCe--------eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCC
Q psy2148 978 INDVYLRDSGLYTCKATNKHG--------EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEE 1049 (1884)
Q Consensus 978 I~~~~~~D~G~Y~C~a~N~~G--------~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1884)
|.+++.+|+|.|.|.+.|..| .......|.|...+
T Consensus 87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~------------------------------------- 129 (232)
T 3qhz_H 87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS------------------------------------- 129 (232)
T ss_dssp ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC-------------------------------------
T ss_pred ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC-------------------------------------
Confidence 999999999999999998632 22233466665211
Q ss_pred CCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCCCcEEEEEECCEeccCCCceEEEeeCc----EEEEEEcccCcCCcE
Q psy2148 1050 KPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFG----FISLDMDYVYARDSG 1125 (1884)
Q Consensus 1050 ~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~~d~G 1125 (1884)
..+|.+..... ...+..|+.++|.|.+.+...+...+.|+++|..+...........++ .+.|.|.....+| |
T Consensus 130 -~~~P~v~~~~~-~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g 206 (232)
T 3qhz_H 130 -TKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-Q 206 (232)
T ss_dssp -CBCCEEEEECC--------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-C
T ss_pred -CCCCEEEEecc-cccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-C
Confidence 12344432222 234567999999999985322255789999997542111000111122 2468899888888 9
Q ss_pred EEEEEEEcCCeeeEEEEEEEE
Q psy2148 1126 EYICRATNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1126 ~Y~C~a~n~~G~~~~~~~l~v 1146 (1884)
.|+|.|.|..+.......|.+
T Consensus 207 ~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 207 TYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp CCEEEEEEGGGTEEEEEECCC
T ss_pred EEEEEEEeCCCCccEEEEeCC
Confidence 999999999887776666543
No 419
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.38 E-value=4.6e-13 Score=128.63 Aligned_cols=95 Identities=24% Similarity=0.351 Sum_probs=88.7
Q ss_pred CCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEE
Q psy2148 1739 GVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAM 1818 (1884)
Q Consensus 1739 ~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 1818 (1884)
...+|.|...+.+..+.+|+++.|.|.+.|.|.|.|.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.
T Consensus 11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 90 (106)
T 1nct_A 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE 90 (106)
T ss_dssp SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence 34789999999999999999999999999999999999999999988889888877777899999999999999999999
Q ss_pred eCCeeEEEEEEEEEE
Q psy2148 1819 NNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1819 N~~G~~~~~~~l~V~ 1833 (1884)
|..|..+.++.|.|+
T Consensus 91 N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 91 NSEGKQEAEFTLTIQ 105 (106)
T ss_dssp CSSCBCCEEEEEEEC
T ss_pred eCCCeEEEEEEEEEE
Confidence 999999999999985
No 420
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.38 E-value=2e-12 Score=148.12 Aligned_cols=188 Identities=10% Similarity=0.055 Sum_probs=114.7
Q ss_pred EeecceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccceEEEeeccceee----e-eeeeeeeeceEEEE
Q psy2148 1268 ITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTAFLIFNFCLHAV----I-FSHPIFDLGFVSLD 1342 (1884)
Q Consensus 1268 ~~~~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~L~ 1342 (1884)
...+..+.+.+|+.++|.|.+.+ .+...+.|+|......+.... ...+...... . +.......... |.
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~--~~~~~v~W~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~ 77 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKN--SQYPWMSWYQQDLQKQLQWLF----TLRSPGDKEVKSLPGADYLATRVTDTE-LR 77 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSC--TTCCCEEEEEEETTCCEEEEE----EECSTTCEEEEEETTEEEEEECCSSSC-CE
T ss_pred EeCCCeEEEeCCCcEEEEEEeCC--CCcceEEEEEECCCCCcEEEE----EECCCcceecCCccCCcEEEEeCCCCe-EE
Confidence 44467889999999999999774 467789999843211111000 0000000000 0 11111222222 99
Q ss_pred EeeecccCceEEEEEEEcccc------ceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCcc
Q psy2148 1343 IDYVYPEDQGEYVCRAYNDHG------EAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDL 1416 (1884)
Q Consensus 1343 I~~~~~~d~G~Y~C~a~n~~g------~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1416 (1884)
|.+++.+|+|.|.|.+.+..+ .....+.|.|.....
T Consensus 78 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~-------------------------------------- 119 (253)
T 3to4_D 78 LQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK-------------------------------------- 119 (253)
T ss_dssp EEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCST--------------------------------------
T ss_pred EccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCC--------------------------------------
Confidence 999999999999999987543 122234566643211
Q ss_pred CCcccCCCCeEEEccCCccccccccceEEEEEEeeCC-CCCC-eEEEeecCeecCCCCCceeee-------eCce----E
Q psy2148 1417 YEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVG-DPNM-KVEWFLNGKPLPHKNRFNPIY-------DFGY----V 1483 (1884)
Q Consensus 1417 ~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g-~p~~-~i~W~~~~~~l~~~~~~~~~~-------~~~~----~ 1483 (1884)
...+|.+.........+..|+.++|.|.+. | .|.+ .|+|+++|..+..+....... .++. .
T Consensus 120 ----~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~--g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s 193 (253)
T 3to4_D 120 ----NVFPPEVAVFEPSEAEISHTQKATLVCLAT--GFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSS 193 (253)
T ss_dssp ----TCBCCEEEEEECCHHHHHHHSEEEEEEEEE--EEBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEE
T ss_pred ----CCCCCeEEEeCCChhhcccCCceEEEEEEc--eEECCcEEEEEEECCEECCCceecccccccccccCCCCCEEEEE
Confidence 123566554444434456778999999997 5 6766 899999999986543211110 2332 3
Q ss_pred EEEEeeeccCC-CeEEEEEEEecC
Q psy2148 1484 AMNFGWVYPED-SGEYLCRATNLY 1506 (1884)
Q Consensus 1484 ~L~i~~~~~~d-~G~Y~c~a~n~~ 1506 (1884)
.|.|.....+| .|.|+|.|.|..
T Consensus 194 ~l~i~~~~~~d~~~~ytC~v~h~~ 217 (253)
T 3to4_D 194 RLRVSATFWQNPRNHFRCQVQFYG 217 (253)
T ss_dssp EEEEEHHHHTCTTCEEEEEEEECC
T ss_pred EEEECHHHhccCCCEEEEEEEeCC
Confidence 67788777777 779999999974
No 421
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.38 E-value=5.7e-13 Score=128.79 Aligned_cols=93 Identities=22% Similarity=0.319 Sum_probs=77.2
Q ss_pred CCeEEeccCceEEcCCceEEEEEEEecC---CCcEEEEEeCCEe-c--CCCCCeEEeec--C----CeEEEEEccCCCCC
Q psy2148 1742 PPSFLTTISSAVINVGQLARFDAKISAT---KPLDVYWLKNGKK-I--IPDIRYKTLEE--D----NLFTLLIIEAVVED 1809 (1884)
Q Consensus 1742 ~P~~~~~~~~~~~~~G~~~~l~C~~~g~---p~p~v~W~k~~~~-l--~~~~~~~~~~~--~----~~~~L~i~~~~~~d 1809 (1884)
-|.|...|++..+.+|++++|.|.+.|. |.|.|.|||++.. + ....++.+... . ..+.|+|.++...|
T Consensus 7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 86 (126)
T 2dav_A 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF 86 (126)
T ss_dssp SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence 4678889999999999999999999885 8999999997521 1 12345555321 1 24799999999999
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1810 SGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1810 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
+|.|+|+|+|..|..+++++|+|..
T Consensus 87 aG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 87 AGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 9999999999999999999999998
No 422
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.38 E-value=3.3e-12 Score=120.85 Aligned_cols=90 Identities=26% Similarity=0.378 Sum_probs=82.7
Q ss_pred EEeccCceEEcCCceEEEEEEEecC-CCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1745 FLTTISSAVINVGQLARFDAKISAT-KPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1745 ~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
+...+.+..+.+|+.++|.|.+.|. |.|.|.|+|++..+..+.++.+...++...|.|.++..+|+|.|+|.|.|..|.
T Consensus 4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 83 (97)
T 2bk8_A 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE 83 (97)
T ss_dssp EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence 4556678899999999999999997 999999999999999888998877777889999999999999999999999999
Q ss_pred EEEEEEEEEEe
Q psy2148 1824 ARCEAELVVQS 1834 (1884)
Q Consensus 1824 ~~~~~~l~V~~ 1834 (1884)
...++.|.|.+
T Consensus 84 ~~~~~~l~V~~ 94 (97)
T 2bk8_A 84 DSSYAELFVKG 94 (97)
T ss_dssp EEEEEEEEETT
T ss_pred EeEEEEEEEEe
Confidence 99999999975
No 423
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=7.3e-13 Score=126.50 Aligned_cols=93 Identities=22% Similarity=0.318 Sum_probs=82.5
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCC-CcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDP-SMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P-~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
.||.|+..++++++.+|++++|.|.+. +.| ++.+.|+|||.+|..+.++.+..++..++|.|.+++.+|+|.|+|.|
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~--~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 84 (104)
T 2eny_A 7 GHVGITKRLKTMEVLEGESCSFECVLS--HESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV 84 (104)
T ss_dssp CCCCCSBCCCCEEEESSCCEEEEEECS--SCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE
T ss_pred CCCEEEecCCCcEEcCCCcEEEEEEEc--CCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE
Confidence 567889999999999999999999998 445 34799999999999999999988888889999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecc
Q psy2148 994 TNKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~ 1013 (1884)
. ..+.++.|+|.++|.
T Consensus 85 ~----~~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 85 R----GLTSKASLIVRERSG 100 (104)
T ss_dssp T----TEEEEECEEEECCCS
T ss_pred C----CeeEEEEEEEeCCCc
Confidence 4 467889999998764
No 424
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.37 E-value=6.9e-13 Score=119.85 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=72.9
Q ss_pred cCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCeeEEEEE
Q psy2148 1749 ISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEA 1828 (1884)
Q Consensus 1749 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~ 1828 (1884)
+.+..+.+|+.++|.|.+.| |.|.|+|+|||.+|..+.++.+..+++.+.|.|.++..+|+|.|+|.|.| .+.++
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a 77 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIF 77 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEE
T ss_pred CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEE
Confidence 46788999999999999976 88999999999999999999999988889999999999999999999855 45678
Q ss_pred EEEEEe
Q psy2148 1829 ELVVQS 1834 (1884)
Q Consensus 1829 ~l~V~~ 1834 (1884)
.|+|.+
T Consensus 78 ~l~V~e 83 (84)
T 2lu7_A 78 LVSVEE 83 (84)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 888875
No 425
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.4e-12 Score=126.94 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=83.6
Q ss_pred CCCeEEe---ccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEE
Q psy2148 1741 VPPSFLT---TISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVA 1817 (1884)
Q Consensus 1741 ~~P~~~~---~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 1817 (1884)
.+|.|.. .+....+.+|+.+.|.|.+.|.|.|.|+|+|+|..+. ..++.+...+....|.|.++..+|+|.|+|.|
T Consensus 20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 98 (118)
T 2e7c_A 20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSV 98 (118)
T ss_dssp EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence 3677753 3567889999999999999999999999999999996 56777777777778999999999999999999
Q ss_pred EeCCeeEEEEEEEEEEecC
Q psy2148 1818 MNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1818 ~N~~G~~~~~~~l~V~~~~ 1836 (1884)
.|..|..+.++.|.|.++|
T Consensus 99 ~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 99 QIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp ECSSCEECCEEEEEEECCC
T ss_pred EeCCCeEEEEEEEEEEcCC
Confidence 9999999999999998753
No 426
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.37 E-value=1.1e-12 Score=150.25 Aligned_cols=181 Identities=12% Similarity=0.224 Sum_probs=118.1
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--E--E-c------------cCCCcEEEEee-CCeEEEEE
Q psy2148 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--K--A-L------------SAGSRIKTIND-FGFVILEI 978 (1884)
Q Consensus 917 p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~--~-i------------~~~~~~~~~~~-~~~~~L~I 978 (1884)
+.++..+..+.+.+|++++|.|.+. .+.+.|.|+|+. . . + ....|+.+..+ .+...|.|
T Consensus 4 ~~v~q~p~~v~v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I 80 (252)
T 1oga_E 4 GGITQSPKYLFRKEGQNVTLSCEQN---LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTV 80 (252)
T ss_dssp -CEECSCSEEEEETTCCEEECCEEC---SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEE
T ss_pred ccceEcCCeEEEcCCCcEEEEEEeC---CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEE
Confidence 4566777889999999999999985 246799999952 1 1 1 02356665432 34457999
Q ss_pred ccCCCCCCeEEEEEEEcCC---eeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCc
Q psy2148 979 NDVYLRDSGLYTCKATNKH---GEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPV 1055 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~~---G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1055 (1884)
.+++.+|+|.|.|.+.|.. ........|+|...... ..+|.
T Consensus 81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~------------------------------------~~~P~ 124 (252)
T 1oga_E 81 TSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKN------------------------------------VFPPE 124 (252)
T ss_dssp CSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGG------------------------------------CBCCE
T ss_pred CcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCC------------------------------------CCCCe
Confidence 9999999999999999962 11222346777642110 03454
Q ss_pred eeeecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceE--EE-----eeCc----EEEEEEcccCcC-
Q psy2148 1056 FTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVK--TV-----YDFG----FISLDMDYVYAR- 1122 (1884)
Q Consensus 1056 ~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~--~~-----~~~~----~~~l~i~~~~~~- 1122 (1884)
+.........+.+|+.++|.|.+.+ ..|. +.|.|+|||+.+..+.... .. ..++ .+.|.|......
T Consensus 125 v~~~~~~~~~~~~g~~~~L~C~~~g-~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d 203 (252)
T 1oga_E 125 VAVFEPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQN 203 (252)
T ss_dssp EEEECCCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTC
T ss_pred EEEECCChhhhccCCceEEEEEEee-EcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhcc
Confidence 4433222234457899999999983 2454 5999999999987653211 00 1222 234777766553
Q ss_pred CcEEEEEEEEcCCee
Q psy2148 1123 DSGEYICRATNKWGT 1137 (1884)
Q Consensus 1123 d~G~Y~C~a~n~~G~ 1137 (1884)
|.|.|+|.|.|....
T Consensus 204 ~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 204 PRNHFRCQVQFYGLS 218 (252)
T ss_dssp TTCEEEEEEEECCBC
T ss_pred CCCEEEEEEEcCCCC
Confidence 678999999997553
No 427
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.37 E-value=5.2e-13 Score=122.85 Aligned_cols=87 Identities=14% Similarity=0.249 Sum_probs=74.2
Q ss_pred CCCeEEeccCceEE--cCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEE
Q psy2148 1741 VPPSFLTTISSAVI--NVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAM 1818 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~--~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 1818 (1884)
.||.|...+.+..+ .+|+.+.|.|.+.+ |.|.|+|+|||++|..+.++.+..+++.+.|.|.++..+|+|.|+|.|.
T Consensus 3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 81 (91)
T 2lvc_A 3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG 81 (91)
T ss_dssp CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence 57777766666554 57999999999966 8889999999999999999999999999999999999999999999997
Q ss_pred eCCeeEEEEEEEEE
Q psy2148 1819 NNAGEARCEAELVV 1832 (1884)
Q Consensus 1819 N~~G~~~~~~~l~V 1832 (1884)
|. +.+++|+|
T Consensus 82 n~----~~~~~ltV 91 (91)
T 2lvc_A 82 DE----CAYFTVTI 91 (91)
T ss_dssp SC----EEEEEEEC
T ss_pred ce----EEEEEEEC
Confidence 64 55666654
No 428
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.37 E-value=2.5e-12 Score=133.73 Aligned_cols=103 Identities=29% Similarity=0.442 Sum_probs=88.3
Q ss_pred ccCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEee-CCeEEEEEccCCCCCCeEEE
Q psy2148 912 DLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIND-FGFVILEINDVYLRDSGLYT 990 (1884)
Q Consensus 912 ~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~ 990 (1884)
....+|.|...+.++.+.+|+.++|.|.+. +.|.+.|+|+|+|..+..+.++.+... ++.+.|.|.+++.+|+|.|+
T Consensus 37 ~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 114 (154)
T 1fhg_A 37 KPHVKPYFTKTILDMEVVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114 (154)
T ss_dssp CCCEEEEEEECCCCEEEETTSCEEEEEEEE--EESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEE
T ss_pred cCCCCCeEEccCCcEEEeCCCeEEEEEEEE--EecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEE
Confidence 345689999999999999999999999998 678889999999999998888877643 45678999999999999999
Q ss_pred EEEEcCCeeEEEEEEEEEEeeccccc
Q psy2148 991 CKATNKHGEATTSCKLTVKGRQGIDV 1016 (1884)
Q Consensus 991 C~a~N~~G~~~~~~~l~V~~~~~~~~ 1016 (1884)
|.|.|..|..+..+.|.|..+|.+..
T Consensus 115 C~a~N~~G~~~~~~~l~V~~~p~~~~ 140 (154)
T 1fhg_A 115 CKAVNSLGEATCTAELLVETMGKEGE 140 (154)
T ss_dssp EEEEETTEEEEEEEEEEEECC-----
T ss_pred EEEEECCCeEEEEEEEEEeCcCcCCC
Confidence 99999999999999999998776543
No 429
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=124.04 Aligned_cols=92 Identities=29% Similarity=0.406 Sum_probs=82.5
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCC-CCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIP-DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.||.|...+....+.+|+.++|.|.+.|.|.|.|.|+|++..+.. ..++.+..++ .|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~n 83 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYTCVATS 83 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTC---CEEEESCCTTTCCEEEEEEEC
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCC---EEEEccCCcccCEEEEEEEEc
Confidence 689999999999999999999999999999999999999998874 4556554444 799999999999999999999
Q ss_pred CCeeEEEEEEEEEEec
Q psy2148 1820 NAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~~ 1835 (1884)
..|..+.++.|.|.++
T Consensus 84 ~~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 84 SSGETSWSAVLDVTES 99 (100)
T ss_dssp SSCCCBCCEEEEEESC
T ss_pred CCCCEEEEEEEEEecC
Confidence 9999999999999873
No 430
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.36 E-value=3.1e-12 Score=123.44 Aligned_cols=93 Identities=20% Similarity=0.168 Sum_probs=75.5
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeC-------CeEEEEEccCCCCCCe
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF-------GFVILEINDVYLRDSG 987 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G 987 (1884)
.||.| .+.. ...+..+.|.|.+. |.|.|.|+|+|||++|..+.++.+.... ....|.|.++..+|+|
T Consensus 3 ~pP~I--~l~~--~~~~~~~~l~c~v~--G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 76 (126)
T 1he7_A 3 MPASV--QLHT--AVEMHHWCIPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76 (126)
T ss_dssp CCCCC--CCCC--CCCCCEEEEEEEEC--CSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCE
T ss_pred CCCEE--EccC--CccCccEEEEEEEe--eeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCE
Confidence 56775 2222 33678999999998 8899999999999999988775443211 2357999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEEEEEeecc
Q psy2148 988 LYTCKATNKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 988 ~Y~C~a~N~~G~~~~~~~l~V~~~~~ 1013 (1884)
.|+|.|+|.+|..+.++.|.|...|.
T Consensus 77 ~YtC~A~N~~G~~~~t~~l~v~~~P~ 102 (126)
T 1he7_A 77 NYTLLAANPFGQASASIMAAFMDNPF 102 (126)
T ss_dssp EEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred EEEEEEEECCCeEEEEEEEEEEcCCC
Confidence 99999999999999999999987664
No 431
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.36 E-value=1.1e-12 Score=171.54 Aligned_cols=169 Identities=18% Similarity=0.321 Sum_probs=119.9
Q ss_pred CceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccC------------CCcEEEEeeCCeEEEEEccCCCCCCeEEEE
Q psy2148 924 TDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA------------GSRIKTINDFGFVILEINDVYLRDSGLYTC 991 (1884)
Q Consensus 924 ~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~------------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 991 (1884)
.+..+.+|++++|.|.+.. +.|.+.|+|+|++..+.. ..+..+..++ +|.|.+++.+|+|.|+|
T Consensus 374 ~~~~~~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~G~Y~C 449 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAP-KKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG---SLFLPAVGIQDEGIFRC 449 (581)
T ss_dssp EEEEEETTSCEEECCTTCC-SSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS---CEEESSCCGGGCEEEEE
T ss_pred cccceecCCcEEEeeeecC-CCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc---eEEEeccccccCeEEEE
Confidence 4478899999999999832 678889999998763311 2244443332 69999999999999999
Q ss_pred EEEcCCeeE-EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCC
Q psy2148 992 KATNKHGEA-TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAG 1070 (1884)
Q Consensus 992 ~a~N~~G~~-~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 1070 (1884)
.|.|..|.. +..+.|.|..+|. .|.+.... ..+.+|+
T Consensus 450 ~~~n~~~~~~~~~~~l~V~~~~~---------------------------------------~p~i~~~~---~~~~~~~ 487 (581)
T 3o3u_N 450 QAMNRNGKETKSNYRVRVYQIPG---------------------------------------KPEIVDSA---SELTAGV 487 (581)
T ss_dssp EEECTTSCEEEEEEEEEEEBCCC---------------------------------------CCEEESCC---SEECTTS
T ss_pred EEEcCCCceeEEEEEEEEEcCCC---------------------------------------CCEEEcCC---cccccCC
Confidence 999999987 7888999986443 22222111 1234555
Q ss_pred c-EEEEEEEeeCCCCCcEEEEEECCEeccCCC-ceEEEe------eCc----EEEEEEcccC-cCCcEEEEEEEEcCCee
Q psy2148 1071 K-VHFDCRLEPKSDPTMRIDWFFNGRPFATGS-RVKTVY------DFG----FISLDMDYVY-ARDSGEYICRATNKWGT 1137 (1884)
Q Consensus 1071 ~-~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~-~~~~~~------~~~----~~~l~i~~~~-~~d~G~Y~C~a~n~~G~ 1137 (1884)
. +.|.|.+.+ +.|.+.|+|+|||+.+.... ++.+.. +.| .++|.|..+. .++.|.|+|.|+|..+.
T Consensus 488 ~~~~l~C~~~~-~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 488 PNKVGTCVSEG-SYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp CEEEEEEEEEE-EBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred ceeEEEEECCC-CCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 4 467999973 36889999999999987543 222211 111 3569999988 55589999999999764
Q ss_pred eE
Q psy2148 1138 AM 1139 (1884)
Q Consensus 1138 ~~ 1139 (1884)
..
T Consensus 567 ~~ 568 (581)
T 3o3u_N 567 HR 568 (581)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 432
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.36 E-value=3.6e-12 Score=144.61 Aligned_cols=185 Identities=14% Similarity=0.197 Sum_probs=115.9
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeC--CEE---c--------------cCCCcEEEEee--CCeEEEEEc
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHN--GKA---L--------------SAGSRIKTIND--FGFVILEIN 979 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~--g~~---i--------------~~~~~~~~~~~--~~~~~L~I~ 979 (1884)
..+..+.+.+|++|+|.|.+.+...+...+.|||. +.. + ....|+.+..+ .+.+.|+|.
T Consensus 4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 83 (248)
T 3u2s_H 4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN 83 (248)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 34567889999999999999842234568999983 211 1 11356666543 456789999
Q ss_pred cCCCCCCeEEEEEEEcCCe----------------------eEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHh
Q psy2148 980 DVYLRDSGLYTCKATNKHG----------------------EATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEA 1037 (1884)
Q Consensus 980 ~~~~~D~G~Y~C~a~N~~G----------------------~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 1037 (1884)
+++.+|+|.|.|.+.|..+ .......|+|...+
T Consensus 84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~------------------------- 138 (248)
T 3u2s_H 84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS------------------------- 138 (248)
T ss_dssp SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC-------------------------
T ss_pred CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccC-------------------------
Confidence 9999999999999987421 11123466665211
Q ss_pred hcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEeeCCCC-CcEEEEEECCEeccCCCceEEEeeCc----EE
Q psy2148 1038 LYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDP-TMRIDWFFNGRPFATGSRVKTVYDFG----FI 1112 (1884)
Q Consensus 1038 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p-~~~v~W~k~~~~l~~~~~~~~~~~~~----~~ 1112 (1884)
+.+|.+...... ..+..|+.++|.|.+.+. .| .+.+.|+++|..+...........++ .+
T Consensus 139 -------------~~~P~v~~~~~~-~~~~~g~~~~L~C~~~~~-~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s 203 (248)
T 3u2s_H 139 -------------TKGPSVFPLAPS-SKSTSGGTAALGCLVKDY-FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSS 203 (248)
T ss_dssp -------------CBCCEEEEECCC-------CEEEEEEEEEEE-BSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEE
T ss_pred -------------CCCCEEEEeCCC-ccccCCCcEEEEEEEeeE-ECCCeEEEEeECCccCceeecCceECCCCCEEEEE
Confidence 123443322222 344579999999999852 35 57899999987542110000111122 24
Q ss_pred EEEEcccCcCCcEEEEEEEEcCCeeeEEEEEEEE
Q psy2148 1113 SLDMDYVYARDSGEYICRATNKWGTAMTKAKVIC 1146 (1884)
Q Consensus 1113 ~l~i~~~~~~d~G~Y~C~a~n~~G~~~~~~~l~v 1146 (1884)
.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus 204 ~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 204 VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp EEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred EEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 68888888888 9999999999887666555543
No 433
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.36 E-value=2.2e-12 Score=123.54 Aligned_cols=91 Identities=24% Similarity=0.345 Sum_probs=80.5
Q ss_pred CCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCC--cEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS--RIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 916 ~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
|+.|...+.++.+.+|++++|.|.+. + |.+.|+|+|+|..|..+. ++.+..++....|.|.+++.+|+|.|+|.|
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~~~--~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 83 (103)
T 1x44_A 7 GIMVTKQLEDTTAYCGERVELECEVS--E-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMT 83 (103)
T ss_dssp SCCCSBCCCCEEEETTEEEEEEEECS--S-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEE
T ss_pred CceeeccCCCEEEECCCCEEEEEEec--C-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEE
Confidence 44588889999999999999999997 5 668999999999998887 778888888889999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecc
Q psy2148 994 TNKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~ 1013 (1884)
.| .+..+.|.|..+|.
T Consensus 84 ~n----~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 84 TG----GQSSAKLSVDLKSG 99 (103)
T ss_dssp TT----EEEEEEEEEECCCS
T ss_pred CC----CcEEEEEEEeCCCC
Confidence 88 57788999987654
No 434
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=127.93 Aligned_cols=99 Identities=34% Similarity=0.611 Sum_probs=86.8
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEE-eeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI-NDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
..+|.|+..+.++.+.+|+.++|.|.+. +.|.+.|.|+|+|..+....+..+. ...+..+|.|.+++.+|+|.|+|.
T Consensus 7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 84 (110)
T 2dm3_A 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCI 84 (110)
T ss_dssp CCCCEEEECCCEEEEESSSCBCCEEEEE--CSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEE
T ss_pred CCCCcEEeCCCcEEEeCCCEEEEEEEEE--EcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEE
Confidence 4689999999999999999999999998 7788899999999999877655443 344567899999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeeccc
Q psy2148 993 ATNKHGEATTSCKLTVKGRQGI 1014 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~~~ 1014 (1884)
|.|..|..+..+.|.|..+|..
T Consensus 85 a~n~~g~~~~~~~l~V~~~p~~ 106 (110)
T 2dm3_A 85 ATNRAGQNSFSLELVVAAKESG 106 (110)
T ss_dssp EECSSCEEEECCEEEEECCCCS
T ss_pred EECCCCEEEEEEEEEEeCCCCC
Confidence 9999999999999999876653
No 435
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.36 E-value=2.2e-12 Score=134.17 Aligned_cols=97 Identities=31% Similarity=0.514 Sum_probs=87.2
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeec-CCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE-DNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.+|.|...+.+..+..|+.++|.|.+.|.|.|.|+|+|++..+....++.+... .+...|.|.++...|+|.|+|.|.|
T Consensus 40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 119 (154)
T 1fhg_A 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 119 (154)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEE
Confidence 578999999999999999999999999999999999999999988888877643 4467999999999999999999999
Q ss_pred CCeeEEEEEEEEEEecCC
Q psy2148 1820 NAGEARCEAELVVQSKKA 1837 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~~~~ 1837 (1884)
..|....++.|.|...+.
T Consensus 120 ~~G~~~~~~~l~V~~~p~ 137 (154)
T 1fhg_A 120 SLGEATCTAELLVETMGK 137 (154)
T ss_dssp TTEEEEEEEEEEEECC--
T ss_pred CCCeEEEEEEEEEeCcCc
Confidence 999999999999997543
No 436
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.36 E-value=3.7e-12 Score=122.90 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=77.1
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeec-------CCeEEEEEccCCCCCCEEE
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEE-------DNLFTLLIIEAVVEDSGAY 1813 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y 1813 (1884)
.||.| .... ...+..+.|.|.+.|.|.|.|+|+|||++|..+.++.+... .....|.|.++...|+|.|
T Consensus 3 ~pP~I-~l~~---~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 78 (126)
T 1he7_A 3 MPASV-QLHT---AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 78 (126)
T ss_dssp CCCCC-CCCC---CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEE
T ss_pred CCCEE-EccC---CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEE
Confidence 57776 2222 34678899999999999999999999999988877543321 1245899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEEecCCC
Q psy2148 1814 ECVAMNNAGEARCEAELVVQSKKAP 1838 (1884)
Q Consensus 1814 ~C~a~N~~G~~~~~~~l~V~~~~~~ 1838 (1884)
+|.|.|.+|.+.+++.|.|...|.+
T Consensus 79 tC~A~N~~G~~~~t~~l~v~~~P~~ 103 (126)
T 1he7_A 79 TLLAANPFGQASASIMAAFMDNPFE 103 (126)
T ss_dssp EEEEEETTEEEEEEEEECCCSCTTS
T ss_pred EEEEEECCCeEEEEEEEEEEcCCCC
Confidence 9999999999999999999987653
No 437
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.35 E-value=5.5e-12 Score=138.78 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=111.5
Q ss_pred eeecCCceeecCCCeEEEEEEEeccCCCeEEEEeCC--e---ec-------CCCCCeEEEEe---CceeEEEEcccccCC
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFRED--F---PI-------TSSPDFQIHTF---STKSILIMRQVFMED 1706 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~~--~---~~-------~~~~~~~~~~~---~~~~~L~i~~v~~~D 1706 (1884)
+...+..+.+.+|++++|.|.+.+.+ +.+.|+|.. . .+ ....++.+... ....+|.|.+++.+|
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D 82 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED 82 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence 44556778899999999999998764 589999853 1 11 02346666554 455789999999999
Q ss_pred CeEEEEEEEeCCc---------e--EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-CC-cE
Q psy2148 1707 SGVFAVIAENRGG---------K--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-KP-LD 1773 (1884)
Q Consensus 1707 sG~Y~C~a~n~~g---------~--~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~ 1773 (1884)
+|.|.|.+.+..+ . ......|.|...... ..+|.+.... + .++|.|.+.|. |. +.
T Consensus 83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~----~~~P~v~~~~-------~-~~~l~C~~~g~~P~~~~ 150 (207)
T 1ypz_E 83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQP----PAKPSVFIMK-------N-GTNVACLVKDFYPKEVT 150 (207)
T ss_dssp CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCC----CCCCEEEEEE-------E-TTEEEEEEEEESSSCCE
T ss_pred CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCC----CCCCeEEEeC-------C-CCeEEEEEeeEeCCCeE
Confidence 9999999998642 1 123467888753211 1355554321 1 26999999884 54 79
Q ss_pred EEEEeCCEecCCCCCeEEeecCCeEEEEEccCCC-CCCEEEEEEEEeCCeeE
Q psy2148 1774 VYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVV-EDSGAYECVAMNNAGEA 1824 (1884)
Q Consensus 1774 v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~G~~ 1824 (1884)
|+|+++ ..+...........++.+.+. .... +|.|.|+|.|.|..+..
T Consensus 151 v~W~~~-~~l~~~~~~~~~~~~g~y~~~--~~~~~~~~~~ytC~v~~~~~~~ 199 (207)
T 1ypz_E 151 ISLRSS-KKIVEFDPAIVISPSGKYSAV--KLGQYGDSNSVTCSVQHNSETV 199 (207)
T ss_dssp EEEECS-SEEEECCCEEEECTTSSEEEE--ECEEESSTTTCEEEEEETTEEE
T ss_pred EEEecC-CcccCCccceEEcCCCcEEEE--EeecccCCCcEEEEEEECCccE
Confidence 999999 766533222122333433333 3333 67899999999998754
No 438
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.35 E-value=2.6e-12 Score=156.12 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=119.7
Q ss_pred eeeecCCcee-ecCCCeEEEEEEEecc-CC---CeEEEEeCCeecCCCCC-----eEEEEeCceeEEEEcccccCCCeEE
Q psy2148 1641 VFTKKIQPCR-AFEQDQARFEVEFDGD-PL---PTIKWFREDFPITSSPD-----FQIHTFSTKSILIMRQVFMEDSGVF 1710 (1884)
Q Consensus 1641 ~~~~~~~~~~-v~~G~~~~l~C~~~g~-p~---~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~L~i~~v~~~DsG~Y 1710 (1884)
.++..+.... +.+|++++|.|.+.|. |. ..|+|+|++..+..... +..........|.|..+..+|+|.|
T Consensus 169 v~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y 248 (376)
T 2aty_A 169 VFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEF 248 (376)
T ss_pred EEEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEE
Confidence 3444555444 7899999999999988 33 37999999966532211 1000111234799999999999999
Q ss_pred EEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecC-C-CcEEEEEeCCEecCCCCC
Q psy2148 1711 AVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISAT-K-PLDVYWLKNGKKIIPDIR 1788 (1884)
Q Consensus 1711 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~-p-~p~v~W~k~~~~l~~~~~ 1788 (1884)
.|.+.+..+.......+.+... ...+|.+...+.......|+.++|.|.+.|. | .+.|+|+|||+++.....
T Consensus 249 ~C~~~~~~~~~~~~~~v~~~~~------~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~ 322 (376)
T 2aty_A 249 KCRVNSAAFPAPIEKTISKTKG------RPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKN 322 (376)
T ss_pred EEEEecCCCCCceEEEEcCCCC------CCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEe
Confidence 9999998764333333322100 0158888877777666679999999999995 4 468999999998854322
Q ss_pred eEE--eecCC---eEEEEEccCCCCCCEEEEEEEEeCCe
Q psy2148 1789 YKT--LEEDN---LFTLLIIEAVVEDSGAYECVAMNNAG 1822 (1884)
Q Consensus 1789 ~~~--~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G 1822 (1884)
... ..++. ...|.|.....+|.|.|+|.|.|..-
T Consensus 323 ~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 323 TQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred CCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 211 12222 23577777777789999999999764
No 439
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.35 E-value=2e-12 Score=145.40 Aligned_cols=182 Identities=17% Similarity=0.212 Sum_probs=115.2
Q ss_pred eeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--EE---c------------c-CCCcEEEEeeC--CeEEEEE
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--KA---L------------S-AGSRIKTINDF--GFVILEI 978 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~~---i------------~-~~~~~~~~~~~--~~~~L~I 978 (1884)
+...+..+.+.+|++++|.|.+.+...+.+.|.|||.. .. | . ...|+.+..+. +.+.|.|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 45567788999999999999998321255689999842 21 1 0 24566665432 5678999
Q ss_pred ccCCCCCCeEEEEEEEcC--Ce--eEEEEEEEEEEeec-ccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCC
Q psy2148 979 NDVYLRDSGLYTCKATNK--HG--EATTSCKLTVKGRQ-GIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNP 1053 (1884)
Q Consensus 979 ~~~~~~D~G~Y~C~a~N~--~G--~~~~~~~l~V~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1884)
.+++.+|+|.|.|.+.|. .. .......|.|.... ... ...+
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~----------------------------------~~~~ 129 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLD----------------------------------ADIS 129 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCC----------------------------------SCCS
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCc----------------------------------ccCC
Confidence 999999999999999985 11 11223577776210 000 0011
Q ss_pred CceeeecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEE-CCEeccCCCceEEEeeCc----EEEEEEcccCcCCcEEE
Q psy2148 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFF-NGRPFATGSRVKTVYDFG----FISLDMDYVYARDSGEY 1127 (1884)
Q Consensus 1054 p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k-~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y 1127 (1884)
|...........+.+|+.++|.|.+.+ ..|. +.|.|++ ||+.+..+........++ ...|.|..... | |.|
T Consensus 130 p~~~v~~p~~~~v~~g~~~~L~C~~~g-~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~y 206 (230)
T 1ypz_F 130 PKPTIFLPSVAETNLHKTGTYLCLLEA-FFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEH 206 (230)
T ss_dssp CCCCEECCCHHHHHHHSCEEEEEEEEE-ESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCE
T ss_pred CCceEECCCchhhccCCcceEEEEEee-ecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEE
Confidence 111111111233456889999999983 3464 6999999 888775432111112233 24688887765 4 999
Q ss_pred EEEEEcCCee
Q psy2148 1128 ICRATNKWGT 1137 (1884)
Q Consensus 1128 ~C~a~n~~G~ 1137 (1884)
+|.|.|..+.
T Consensus 207 tC~v~~~~~~ 216 (230)
T 1ypz_F 207 RCIVKHENNK 216 (230)
T ss_dssp EEEEECSSCT
T ss_pred EEEEEECCCC
Confidence 9999998764
No 440
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=124.01 Aligned_cols=93 Identities=30% Similarity=0.518 Sum_probs=81.0
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccC-CCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA-GSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
..||.|...+.+..+.+|+.+.|.|.+. +.|.+.|.|+|+|..+.. ..++.+..++ +|.|.+++.+|+|.|+|.
T Consensus 6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~ 80 (100)
T 2edj_A 6 SGPPIILQGPANQTLAVDGTALLKCKAT--GDPLPVISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYTCV 80 (100)
T ss_dssp CSSCEEEECCCCEEEESSSEEEECCEEE--CSSCCEEEEEESSSEESSSCSSCEECTTC---CEEEESCCTTTCCEEEEE
T ss_pred CCCCEEEeCcCCEEEcCCCcEEEEEEEE--EcCCCEEEEEECCEECCCCCCCEEEcCCC---EEEEccCCcccCEEEEEE
Confidence 4689999999999999999999999998 778889999999999873 4555544333 699999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEee
Q psy2148 993 ATNKHGEATTSCKLTVKGR 1011 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~ 1011 (1884)
|.|..|..+..+.|.|.++
T Consensus 81 a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 81 ATSSSGETSWSAVLDVTES 99 (100)
T ss_dssp EECSSCCCBCCEEEEEESC
T ss_pred EEcCCCCEEEEEEEEEecC
Confidence 9999999999999999754
No 441
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.35 E-value=3.3e-12 Score=140.50 Aligned_cols=170 Identities=22% Similarity=0.312 Sum_probs=111.2
Q ss_pred eeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--E---Ec-------cCCCcEEEEee---CCeEEEEEccCCC
Q psy2148 919 FLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--K---AL-------SAGSRIKTIND---FGFVILEINDVYL 983 (1884)
Q Consensus 919 ~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~---~i-------~~~~~~~~~~~---~~~~~L~I~~~~~ 983 (1884)
+...+..+.+.+|++|+|.|.+.+ .+ +.|.|+|.. . .+ ....|+.+..+ .+...|.|.+++.
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~--~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~ 80 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTT--TM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQL 80 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESS--CC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred cEECCCeEEEccCCcEEEEEEEeC--CC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence 456677889999999999999983 33 479999843 2 11 13457776654 5667899999999
Q ss_pred CCCeEEEEEEEcCCe---------e--EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCC
Q psy2148 984 RDSGLYTCKATNKHG---------E--ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPN 1052 (1884)
Q Consensus 984 ~D~G~Y~C~a~N~~G---------~--~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1884)
+|+|.|.|.+.|..| . ......|+|...... +.
T Consensus 81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~------------------------------------~~ 124 (207)
T 1ypz_E 81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQP------------------------------------PA 124 (207)
T ss_dssp GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCC------------------------------------CC
T ss_pred HHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCC------------------------------------CC
Confidence 999999999998743 1 112357888642111 12
Q ss_pred CCceeeecCCCcCcCCCCcEEEEEEEeeCCCCC-cEEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEE
Q psy2148 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPT-MRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRA 1131 (1884)
Q Consensus 1053 ~p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p~-~~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 1131 (1884)
+|.+... . ..+.|.|.+.+ ..|. +.|.|+++ +.+..+........++...+. .....+|.|.|+|.|
T Consensus 125 ~P~v~~~--------~-~~~~l~C~~~g-~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~-~~~~~~~~~~ytC~v 192 (207)
T 1ypz_E 125 KPSVFIM--------K-NGTNVACLVKD-FYPKEVTISLRSS-KKIVEFDPAIVISPSGKYSAV-KLGQYGDSNSVTCSV 192 (207)
T ss_dssp CCEEEEE--------E-ETTEEEEEEEE-ESSSCCEEEEECS-SEEEECCCEEEECTTSSEEEE-ECEEESSTTTCEEEE
T ss_pred CCeEEEe--------C-CCCeEEEEEee-EeCCCeEEEEecC-CcccCCccceEEcCCCcEEEE-EeecccCCCcEEEEE
Confidence 3433221 1 12689999984 3454 79999999 776544222222334433332 223336789999999
Q ss_pred EcCCeeeE
Q psy2148 1132 TNKWGTAM 1139 (1884)
Q Consensus 1132 ~n~~G~~~ 1139 (1884)
.|..+..+
T Consensus 193 ~~~~~~~~ 200 (207)
T 1ypz_E 193 QHNSETVH 200 (207)
T ss_dssp EETTEEEE
T ss_pred EECCccEe
Confidence 99987654
No 442
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.35 E-value=2.7e-12 Score=147.04 Aligned_cols=176 Identities=11% Similarity=0.156 Sum_probs=114.4
Q ss_pred CceeecCCCeEEEEEEEeccC--CCeEEEEeCC--e---ec-------------CCCCCeEEEEeC--ceeEEEEccccc
Q psy2148 1647 QPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--F---PI-------------TSSPDFQIHTFS--TKSILIMRQVFM 1704 (1884)
Q Consensus 1647 ~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~---~~-------------~~~~~~~~~~~~--~~~~L~i~~v~~ 1704 (1884)
..+.+.+|++++|.|.+.+.+ ...+.|+|.. . .+ ....++.+.... ...+|.|.+++.
T Consensus 8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 87 (263)
T 3iu4_H 8 GPGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQT 87 (263)
T ss_dssp CCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCG
T ss_pred CCEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCH
Confidence 457789999999999998643 5789999742 1 11 012456654433 456799999999
Q ss_pred CCCeEEEEEEEeCCc--------eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCC-cEE
Q psy2148 1705 EDSGVFAVIAENRGG--------KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKP-LDV 1774 (1884)
Q Consensus 1705 ~DsG~Y~C~a~n~~g--------~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~-p~v 1774 (1884)
+|+|.|.|.+.+..+ .......|.|..... .+|.+........+..|+.++|.|.+.| .|. +.|
T Consensus 88 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~------~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v 161 (263)
T 3iu4_H 88 DDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAAST------KGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTV 161 (263)
T ss_dssp GGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCC------BCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEE
T ss_pred HHCEEEEEEEEeCCCCccccccceeCCceEEEEecccC------CCCEEEEccCccccccCCcEEEEEEEEeEeCCceEE
Confidence 999999999988641 111234677753221 4677775444455668999999999988 453 689
Q ss_pred EEEeCCEecCCCC---CeEEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2148 1775 YWLKNGKKIIPDI---RYKTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832 (1884)
Q Consensus 1775 ~W~k~~~~l~~~~---~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 1832 (1884)
+| ++..+.... ... ...++ ...|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 162 ~W--~~~~~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 222 (263)
T 3iu4_H 162 SW--NSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 222 (263)
T ss_dssp EE--GGGTBCTTEEECCCE-ECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EE--CCcccCCceeecCce-ECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCCcceeEEEcC
Confidence 99 544432210 111 11111 2378898888888 9999999999987665555553
No 443
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.35 E-value=1.2e-12 Score=127.08 Aligned_cols=97 Identities=25% Similarity=0.372 Sum_probs=74.7
Q ss_pred cCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 913 LGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 913 ~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
...+|.|...+.+..+.+|+.+.|.|.+. +.|.+.|.|+|+|..+....++.+....+ +|.|.+++.+|+|.|+|.
T Consensus 7 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p~i~W~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~ 82 (108)
T 3kvq_A 7 ERVAPTITGNLENQTTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQ 82 (108)
T ss_dssp ----CCCBSCCCCEEEETTCCEEEECBCC------CCEEEEESSSBCCCBTTEEEETTTT--EEEECSCCGGGCEEEEEE
T ss_pred ccCCCceecCCCCeEEeCCCeEEEEEECc--CcCCCeEEEEECCeEcccCCCeEEeCCCc--EEEEeecCcccCEEEEEE
Confidence 45689999999999999999999999998 77888999999999998877776654433 799999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeecc
Q psy2148 993 ATNKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~~ 1013 (1884)
|.|..|..+..+.|.|.+++.
T Consensus 83 a~n~~g~~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 83 ACSVLGCAKVEAFFIIEGAQE 103 (108)
T ss_dssp EC----CEEEEEEEEEEC---
T ss_pred EEeCCCceEEEEEEEEeCCCc
Confidence 999999999999999987654
No 444
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.35 E-value=3.2e-12 Score=121.89 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=75.0
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEE--EeeC---CeEEEEEccCCCCCCeEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKT--INDF---GFVILEINDVYLRDSGLY 989 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~--~~~~---~~~~L~I~~~~~~D~G~Y 989 (1884)
.||.+..... ...|+.+.|.|.+. |.|.|.|+|+|+|..|..+.++.. ...+ ...+|.|.+++.+|+|.|
T Consensus 3 ~pP~i~~~~~---~~~~~~~~~~c~v~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (103)
T 1wwb_X 3 FAPTITFLES---PTSDHHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 77 (103)
T ss_dssp CCCCCCCCCC---CCCCCEEEEEEEEE--CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred CCCEEEeccC---ceECcEEEEEEEEE--EeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEE
Confidence 5677643222 34688999999999 789999999999999988766422 2111 134599999999999999
Q ss_pred EEEEEcCCeeEEEEEEEEEEeecc
Q psy2148 990 TCKATNKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 990 ~C~a~N~~G~~~~~~~l~V~~~~~ 1013 (1884)
+|.|+|.+|..+.++.|.|.+.|.
T Consensus 78 ~C~A~N~~G~~~~~~~l~V~~~P~ 101 (103)
T 1wwb_X 78 TLIAKNEYGKDEKQISAHFMGWPG 101 (103)
T ss_dssp EEEEECSSCEEEEEEEECCSCCCC
T ss_pred EEEEEeCCCcEeEEEEEEECCCCC
Confidence 999999999999999999987664
No 445
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.34 E-value=7.3e-12 Score=140.30 Aligned_cols=176 Identities=12% Similarity=0.124 Sum_probs=116.9
Q ss_pred CCceeecCCCeEEEEEEEecc--CCCeEEEEeCC--e---ec--------------CCCCCeEEEEeC--ceeEEEEccc
Q psy2148 1646 IQPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--F---PI--------------TSSPDFQIHTFS--TKSILIMRQV 1702 (1884)
Q Consensus 1646 ~~~~~v~~G~~~~l~C~~~g~--p~~~i~W~~~~--~---~~--------------~~~~~~~~~~~~--~~~~L~i~~v 1702 (1884)
+..+.+.+|++++|.|.+.+. +...+.|+|.. . .+ ....|+.+.... ...+|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (226)
T 3mlr_H 7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL 86 (226)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence 345789999999999999763 45789999842 1 11 012456655433 4567999999
Q ss_pred ccCCCeEEEEEEEeCCc-------e--EEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CC-C
Q psy2148 1703 FMEDSGVFAVIAENRGG-------K--AKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TK-P 1771 (1884)
Q Consensus 1703 ~~~DsG~Y~C~a~n~~g-------~--~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p-~ 1771 (1884)
+.+|+|.|.|.+.+..+ . ......|.|..... .+|.+...+....+..|+.++|.|.+.+ .| .
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~------~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~ 160 (226)
T 3mlr_H 87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTT------KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP 160 (226)
T ss_dssp CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCC------BCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSC
T ss_pred CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCC------CCCcEEEecCcccccCCCCEEEEEEEEEEECCC
Confidence 99999999999977531 0 11224667754221 4677775555555678999999999988 45 4
Q ss_pred cEEEEEeCCEecCCCCC--eEEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2148 1772 LDVYWLKNGKKIIPDIR--YKTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAEL 1830 (1884)
Q Consensus 1772 p~v~W~k~~~~l~~~~~--~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 1830 (1884)
+.|.| ++..+..+.. ......++ ...|.|.....+| |.|+|.|.|..+.......|
T Consensus 161 ~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~ 222 (226)
T 3mlr_H 161 VTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 222 (226)
T ss_dssp CEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred eEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence 68999 4443321100 00111111 2378999998889 99999999998876544443
No 446
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=127.39 Aligned_cols=97 Identities=34% Similarity=0.597 Sum_probs=86.9
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEe-ecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTL-EEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.+|.|...+....+.+|+.++|.|.+.|.|.|.|.|+|++..+....+..+. ...+...|.|.++..+|+|.|+|.|.|
T Consensus 8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 87 (110)
T 2dm3_A 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN 87 (110)
T ss_dssp CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999877665443 344567999999999999999999999
Q ss_pred CCeeEEEEEEEEEEecCC
Q psy2148 1820 NAGEARCEAELVVQSKKA 1837 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~~~~ 1837 (1884)
..|..+.++.|.|..++.
T Consensus 88 ~~g~~~~~~~l~V~~~p~ 105 (110)
T 2dm3_A 88 RAGQNSFSLELVVAAKES 105 (110)
T ss_dssp SSCEEEECCEEEEECCCC
T ss_pred CCCEEEEEEEEEEeCCCC
Confidence 999999999999998654
No 447
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.34 E-value=1.2e-12 Score=127.12 Aligned_cols=94 Identities=21% Similarity=0.428 Sum_probs=75.0
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.+|.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+....++.+...+. .|.|.++..+|+|.|+|.|.|.
T Consensus 9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~n~ 86 (108)
T 3kvq_A 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSV 86 (108)
T ss_dssp --CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTT--EEEECSCCGGGCEEEEEEEC--
T ss_pred CCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCc--EEEEeecCcccCEEEEEEEEeC
Confidence 58889888899999999999999999999999999999999998877776654443 8999999999999999999999
Q ss_pred CeeEEEEEEEEEEecC
Q psy2148 1821 AGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~~~ 1836 (1884)
.|....++.|.|.+.+
T Consensus 87 ~g~~~~~~~l~V~~~~ 102 (108)
T 3kvq_A 87 LGCAKVEAFFIIEGAQ 102 (108)
T ss_dssp --CEEEEEEEEEEC--
T ss_pred CCceEEEEEEEEeCCC
Confidence 9999999999999754
No 448
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.34 E-value=2e-12 Score=129.65 Aligned_cols=87 Identities=23% Similarity=0.277 Sum_probs=77.3
Q ss_pred ccCceEEcCCceEEEEEEEecCCCcEEEEEeCC----------------------------Eec-CCCCCeEEeecCCeE
Q psy2148 1748 TISSAVINVGQLARFDAKISATKPLDVYWLKNG----------------------------KKI-IPDIRYKTLEEDNLF 1798 (1884)
Q Consensus 1748 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~----------------------------~~l-~~~~~~~~~~~~~~~ 1798 (1884)
.+.+..+.+|++++|.|.+.|.|.|.|+|+|++ ..+ ....++.+...+..+
T Consensus 24 ~p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~~~~s 103 (139)
T 1gxe_A 24 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS 103 (139)
T ss_dssp CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred CCCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeCCCEE
Confidence 357889999999999999999999999999999 555 355677777777778
Q ss_pred EEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1799 TLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1799 ~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
.|.|.++..+|+|.|+|.|.|.+|.+..++.|.|.+
T Consensus 104 ~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~d 139 (139)
T 1gxe_A 104 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139 (139)
T ss_dssp EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred EEEECCCCcccCEEEEEEEEeCCceEEEEEEEEEEC
Confidence 999999999999999999999999999999999863
No 449
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=123.83 Aligned_cols=94 Identities=19% Similarity=0.394 Sum_probs=84.1
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
..||.|...+.++.+.+|++++|.|.+. + |.+.|.|+|+|..+..+.++.+..++..+.|.|.+++.+|+|.|+|.|
T Consensus 6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~--~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (103)
T 2edf_A 6 SGPAAIIKPLEDQWVAPGEDVELRCELS--R-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEV 82 (103)
T ss_dssp CCCCCEEECCCCEEECTTSCEEECCEES--S-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEEC
T ss_pred CCCcEEEecCCccEEcCCCCEEEEEEEe--C-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEE
Confidence 3688999999999999999999999998 5 677899999999999989999988888889999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeeccc
Q psy2148 994 TNKHGEATTSCKLTVKGRQGI 1014 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~ 1014 (1884)
.| .+..+.|.|..+|..
T Consensus 83 ~n----~~~~~~l~V~~~p~~ 99 (103)
T 2edf_A 83 EA----SKSTASLHVEEKASG 99 (103)
T ss_dssp SS----CEEEEEEEECCCSSS
T ss_pred cc----CCcEEEEEEeCCCCC
Confidence 99 367889999876653
No 450
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.33 E-value=1.9e-12 Score=129.75 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=75.5
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC----------------------------EEc-cCCCcEEEEeeCCe
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG----------------------------KAL-SAGSRIKTINDFGF 973 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g----------------------------~~i-~~~~~~~~~~~~~~ 973 (1884)
+.++++.+|++++|.|.+. |.|.|.|+|+|+| ..| ....++.+...+..
T Consensus 25 p~~~~v~~G~~v~L~C~~~--G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~~~~ 102 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPIS--GDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDR 102 (139)
T ss_dssp CCEEEESSSSCCCCEEECC--SBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTE
T ss_pred CCCEEEeCCCeEEEEEEEE--EcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeCCCE
Confidence 5678999999999999998 7899999999999 555 35567777777777
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCeeEEEEEEEEEE
Q psy2148 974 VILEINDVYLRDSGLYTCKATNKHGEATTSCKLTVK 1009 (1884)
Q Consensus 974 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 1009 (1884)
+.|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 103 s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 103 SIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp EEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 899999999999999999999999999999999885
No 451
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.32 E-value=3.9e-12 Score=119.55 Aligned_cols=87 Identities=25% Similarity=0.454 Sum_probs=77.9
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.||.|...+.++.+.+|+++.|.|.+. +.| +.|.|+|+|..+..+.++.+. ++ .|.|.+++.+|+|.|+|.|.
T Consensus 8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~--g~p-p~i~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~ 80 (95)
T 2ckn_A 8 QPWGVPVEVESLLVHPGDLLQLRCRLR--DDV-QSINWLRDGVQLVESNRTRIT--GE--EVEVRDSIPADSGLYACVTS 80 (95)
T ss_dssp CSCCBTTBBCCEEECTTSCEEEECCEE--SSC-CEEEEEBTTBCCCCCSSEEEC--SS--EEEESSCCGGGSEEEEEEEE
T ss_pred CCCEEEcCcceEEEcCCCeEEEEEECC--CCC-CceEEEECCEecCCCCCEEEe--CC--EEEECCCChHHCEEEEEEec
Confidence 678888889999999999999999998 556 699999999999888887664 22 79999999999999999999
Q ss_pred cCCeeEEEEEEEEE
Q psy2148 995 NKHGEATTSCKLTV 1008 (1884)
Q Consensus 995 N~~G~~~~~~~l~V 1008 (1884)
|..|..+..+.|.|
T Consensus 81 n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 81 SPSGSDTTYFSVNV 94 (95)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred cCCCcEEEEEEEEE
Confidence 99999999988887
No 452
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.32 E-value=9.8e-12 Score=142.50 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=117.8
Q ss_pred CceeecCCCeEEEEEEEecc--CCCeEEEEeCC--e---ec--------------CCCCCeEEEEeC--ceeEEEEcccc
Q psy2148 1647 QPCRAFEQDQARFEVEFDGD--PLPTIKWFRED--F---PI--------------TSSPDFQIHTFS--TKSILIMRQVF 1703 (1884)
Q Consensus 1647 ~~~~v~~G~~~~l~C~~~g~--p~~~i~W~~~~--~---~~--------------~~~~~~~~~~~~--~~~~L~i~~v~ 1703 (1884)
..+.+.+|++++|.|.+.+. ....+.|+|.. . .+ ....|+.+.... +..+|.|.+++
T Consensus 31 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 110 (256)
T 3sob_H 31 GGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR 110 (256)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence 45678999999999999863 35789999742 1 11 012456555443 44579999999
Q ss_pred cCCCeEEEEEEEeCCc-----------eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CC-
Q psy2148 1704 MEDSGVFAVIAENRGG-----------KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TK- 1770 (1884)
Q Consensus 1704 ~~DsG~Y~C~a~n~~g-----------~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p- 1770 (1884)
.+|+|.|.|.+.+..| .......|.|..... .+|.+........+..|+.++|.|.+.+ .|
T Consensus 111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~------~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~ 184 (256)
T 3sob_H 111 AEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAST------KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE 184 (256)
T ss_dssp GGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCC------BCCEEEEECCC-----TTEEEEEEEEEEEBSS
T ss_pred cccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCC------CCCEEEEECCCcccccCCcEEEEEEEEEEECC
Confidence 9999999999987531 122334677764221 4677775555556778999999999988 55
Q ss_pred CcEEEEEeCCEecCCCCC--eEEeecCC----eEEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1771 PLDVYWLKNGKKIIPDIR--YKTLEEDN----LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1771 ~p~v~W~k~~~~l~~~~~--~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
.+.+.| ++..+..+.. ......++ ...|.|.....+| |.|+|.|.|..+.......|.|.+
T Consensus 185 ~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~~ 251 (256)
T 3sob_H 185 PVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKS 251 (256)
T ss_dssp CCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC-
T ss_pred CeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecccC
Confidence 457999 5554432110 00111111 2378999999999 999999999998877777666553
No 453
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.2e-12 Score=122.69 Aligned_cols=92 Identities=27% Similarity=0.475 Sum_probs=79.7
Q ss_pred cCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 913 LGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 913 ~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
+..||.|...+.+..+.+|+++.|.|.+. +.|.|.|.|+|+|..+...... ...+...|.|.+++.+|+|.|+|.
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~ 82 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVR--GTPVPRITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCL 82 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEE--EESCCCCEEEESSSBCSSCCCE---EETTEEEEEECSCCTTCCBCEEEE
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEe--eeCCCeEEEEECCEECcccceE---eeCCeEEEEECCCChhhCEEEEEE
Confidence 34689999999999999999999999998 6688899999999998766543 233456899999999999999999
Q ss_pred EEcCCeeEEEEEEEEEE
Q psy2148 993 ATNKHGEATTSCKLTVK 1009 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~ 1009 (1884)
|.|..|..+..+.|.|+
T Consensus 83 a~N~~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 83 AENALGQVSCSAWVTVH 99 (99)
T ss_dssp EECSSCEEEEECCEEEC
T ss_pred EEECCCeEEEEEEEEEC
Confidence 99999999998888873
No 454
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.32 E-value=4.4e-13 Score=148.95 Aligned_cols=173 Identities=13% Similarity=0.115 Sum_probs=113.5
Q ss_pred CeeeecCCceeecCCCeEEEEEEEeccCC---CeEEEEeCCeecCCCC------CeEEEEeCceeEEEEcccccCCCeEE
Q psy2148 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPL---PTIKWFREDFPITSSP------DFQIHTFSTKSILIMRQVFMEDSGVF 1710 (1884)
Q Consensus 1640 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~---~~i~W~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~DsG~Y 1710 (1884)
..++..+....+.+|++++|.|.+.|.+. +.|+| ++..+.... ++.- .......|.|.++..+|+|.|
T Consensus 5 ~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g-~~~~~~~L~I~~~~~~D~g~Y 81 (214)
T 1ow0_A 5 RLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCG-CYSVSSVLPGCAEPWNHGKTF 81 (214)
T ss_dssp CCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTT-CCCEEEECTTTHHHHHHTCEE
T ss_pred EEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCC-cEEEEEEEEEeHHHcCCCCeE
Confidence 34456677888899999999999999864 69999 444332110 0000 001345799999999999999
Q ss_pred EEEEEeCCceEEEEEEEEEEecccCCCCCCCCCeEEecc-CceEEcCCceEEEEEEEecC-CC-cEEEEEeCCEecCCCC
Q psy2148 1711 AVIAENRGGKAKCSANLVVEEKRQGGRGGVVPPSFLTTI-SSAVINVGQLARFDAKISAT-KP-LDVYWLKNGKKIIPDI 1787 (1884)
Q Consensus 1711 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~-~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~k~~~~l~~~~ 1787 (1884)
.|.|.|..+.......+.+... ..+|.+...+ ....+..|+.++|.|.+.|. |. +.|+|+|||..+..+.
T Consensus 82 ~C~~~~~~~~~~~~~~i~~~~~-------~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~ 154 (214)
T 1ow0_A 82 TCTAAYPESKTPLTATLSKSGN-------TFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREK 154 (214)
T ss_dssp EEEECCSSCSSCEEEEEECCSS-------CCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGG
T ss_pred EEEEecCCCCCceeEeeccCCC-------CCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCc
Confidence 9999998764333333332111 1578775443 33346789999999999994 54 5999999999986552
Q ss_pred C----eEEe---ecCC---eEEEEEccCCCCCCEEEEEEEEeCCe
Q psy2148 1788 R----YKTL---EEDN---LFTLLIIEAVVEDSGAYECVAMNNAG 1822 (1884)
Q Consensus 1788 ~----~~~~---~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G 1822 (1884)
. .... .++. ...|.|.....+|.|.|+|.|.|...
T Consensus 155 ~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l 199 (214)
T 1ow0_A 155 YLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 199 (214)
T ss_dssp SEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred eeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence 1 1222 2222 12344554444568999999999864
No 455
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.2e-13 Score=125.87 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=77.5
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCC-CCCcEEEEeeCCE-EccC--CCcEEEEee--C----CeEEEEEccCCCC
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTN-DPSMTVEWFHNGK-ALSA--GSRIKTIND--F----GFVILEINDVYLR 984 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~-~P~~~v~W~~~g~-~i~~--~~~~~~~~~--~----~~~~L~I~~~~~~ 984 (1884)
..+.|+..|.+++|.+|+.++|.|.+.+.+ .|.|.|+|||++. .+.. +.++.+... + ..+.|.|.++..+
T Consensus 11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 90 (118)
T 2edn_A 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG 90 (118)
T ss_dssp CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence 457788889999999999999999998432 4889999999752 2322 345554321 1 2468999999999
Q ss_pred CCeEEEEEEEcCCeeEEEEEEEEEEee
Q psy2148 985 DSGLYTCKATNKHGEATTSCKLTVKGR 1011 (1884)
Q Consensus 985 D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 1011 (1884)
|+|.|+|.|+|..|..++.+.|+|+.+
T Consensus 91 D~G~Y~Cevsn~~g~~s~~~~L~V~~~ 117 (118)
T 2edn_A 91 DRGYYRLEVKAKDTCDSCGFNIDVEAP 117 (118)
T ss_dssp TCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred hCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence 999999999999999999999999853
No 456
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.32 E-value=7.8e-12 Score=118.89 Aligned_cols=91 Identities=22% Similarity=0.368 Sum_probs=82.5
Q ss_pred CCCeeeecCCc-eeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTD-LTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~-~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
.+|.|...+.+ ..+.+|++++|.|.+. .|.+.|+|+|+|..|..+.++.+..++..+.|.|.+++.+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~---~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA---DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA 82 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES---CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec---CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE
Confidence 58999998887 6899999999999996 3778999999999999888999988888889999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeec
Q psy2148 994 TNKHGEATTSCKLTVKGRQ 1012 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~ 1012 (1884)
|..+.++.|.|.++|
T Consensus 83 ----g~~~~~~~l~V~~~P 97 (100)
T 2yuv_A 83 ----GDEKCSTELFVRSGP 97 (100)
T ss_dssp ----TTEEEEEEEEECCSC
T ss_pred ----CCceEEEEEEEecCC
Confidence 778889999998765
No 457
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.31 E-value=5.7e-12 Score=120.11 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=75.1
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEE--eecC---CeEEEEEccCCCCCCEEEEE
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKT--LEED---NLFTLLIIEAVVEDSGAYEC 1815 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~--~~~~---~~~~L~i~~~~~~d~G~Y~C 1815 (1884)
.||.+..... ...|+.+.|.|.+.|.|.|.|+|+|+|..+..+.++.. ...+ ....|.|.++..+|+|.|+|
T Consensus 3 ~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 79 (103)
T 1wwb_X 3 FAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL 79 (103)
T ss_dssp CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred CCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEE
Confidence 5777653222 34688999999999999999999999999988766422 1111 13369999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEecC
Q psy2148 1816 VAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1816 ~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
.|.|..|.++.++.|.|.++|
T Consensus 80 ~A~N~~G~~~~~~~l~V~~~P 100 (103)
T 1wwb_X 80 IAKNEYGKDEKQISAHFMGWP 100 (103)
T ss_dssp EEECSSCEEEEEEEECCSCCC
T ss_pred EEEeCCCcEeEEEEEEECCCC
Confidence 999999999999999998754
No 458
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3.7e-12 Score=122.31 Aligned_cols=93 Identities=20% Similarity=0.365 Sum_probs=80.7
Q ss_pred CCCeeeecCCc---eeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEE
Q psy2148 915 KAPEFLTTPTD---LTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTC 991 (1884)
Q Consensus 915 ~~p~~~~~~~~---~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 991 (1884)
.+|.++..+.+ +++.+|++++|.|.+. +.|.+ |.|+|+|..+..+.++.+..++..+.|.|.+++.+|+|.|+|
T Consensus 6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~--~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 82 (104)
T 2e6p_A 6 SGPVHILSPQDKVSLTFTTSERVVLTCELS--RVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFEC 82 (104)
T ss_dssp SSSCCCCBCCSCEEEEEESSSCEECCEECS--STTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEE
T ss_pred CCCCEEECCCCCccEEEeCCCcEEEEEEec--CCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEE
Confidence 56777777776 8999999999999998 66777 999999999998889988888888899999999999999999
Q ss_pred EEEcCCeeEEEEEEEEEEeeccc
Q psy2148 992 KATNKHGEATTSCKLTVKGRQGI 1014 (1884)
Q Consensus 992 ~a~N~~G~~~~~~~l~V~~~~~~ 1014 (1884)
.|.|..+ .+.|.|..+|.+
T Consensus 83 ~a~n~~~----~~~l~V~~~P~p 101 (104)
T 2e6p_A 83 RTEGVSA----FFGVTVQDPSGP 101 (104)
T ss_dssp ECSSCCC----CEEEEEECCCCS
T ss_pred EECCceE----EEEEEEcCCCCC
Confidence 9999754 678888876653
No 459
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.31 E-value=7.6e-13 Score=146.98 Aligned_cols=177 Identities=13% Similarity=0.131 Sum_probs=111.8
Q ss_pred CCee-eecCCceeecCCCeEEEEEEEeeCCCCC---cEEEEeeCCEEccCCCcE-EE-EeeC---CeEEEEEccCCCCCC
Q psy2148 916 APEF-LTTPTDLTLAESTLAHFECRLTPTNDPS---MTVEWFHNGKALSAGSRI-KT-INDF---GFVILEINDVYLRDS 986 (1884)
Q Consensus 916 ~p~~-~~~~~~~~v~~G~~v~l~C~v~~~~~P~---~~v~W~~~g~~i~~~~~~-~~-~~~~---~~~~L~I~~~~~~D~ 986 (1884)
+|.+ +..+....+.+|++++|.|.+. +.++ +.|+| ++..+...... .. ...+ ....|.|.+++.+|+
T Consensus 3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~--g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~ 78 (214)
T 1ow0_A 3 HPRLSLHRPALEDLLLGSEANLTCTLT--GLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHG 78 (214)
T ss_dssp CCCCEEECCCHHHHHHCSSCCCEEEET--TCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHT
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEe--eeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCC
Confidence 3444 4567888899999999999998 4432 68999 44444321000 00 0001 234799999999999
Q ss_pred eEEEEEEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCc
Q psy2148 987 GLYTCKATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDV 1066 (1884)
Q Consensus 987 G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 1066 (1884)
|.|+|.|.|..+.......|.+.. ...+|.+.........+
T Consensus 79 g~Y~C~~~~~~~~~~~~~~i~~~~---------------------------------------~~~~P~v~~~~~~~~~~ 119 (214)
T 1ow0_A 79 KTFTCTAAYPESKTPLTATLSKSG---------------------------------------NTFRPEVHLLPPPSEEL 119 (214)
T ss_dssp CEEEEEECCSSCSSCEEEEEECCS---------------------------------------SCCCCEEEEECCCTTTT
T ss_pred CeEEEEEecCCCCCceeEeeccCC---------------------------------------CCCCCEEEecCCCHHHh
Confidence 999999999876533333332100 01355554333333456
Q ss_pred CCCCcEEEEEEEeeCCCC-CcEEEEEECCEeccCCCceE---EEe---eCcE----EEEEEcccCcCCcEEEEEEEEcCC
Q psy2148 1067 PEAGKVHFDCRLEPKSDP-TMRIDWFFNGRPFATGSRVK---TVY---DFGF----ISLDMDYVYARDSGEYICRATNKW 1135 (1884)
Q Consensus 1067 ~~g~~~~l~C~v~~~~~p-~~~v~W~k~~~~l~~~~~~~---~~~---~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~ 1135 (1884)
..|+.++|.|.+.+ ..| .+.|.|+|||+.+..+.... ... .++. ..|.|.....+|.|.|+|.|.|..
T Consensus 120 ~~g~~~~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~ 198 (214)
T 1ow0_A 120 ALNELVTLTCLARG-FSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA 198 (214)
T ss_dssp TSSSEEEEEEEEEE-ESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred ccCCceEEEEEEee-eECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCC
Confidence 78999999999984 244 36999999999987652111 222 3332 235555444456899999999975
Q ss_pred e
Q psy2148 1136 G 1136 (1884)
Q Consensus 1136 G 1136 (1884)
-
T Consensus 199 l 199 (214)
T 1ow0_A 199 L 199 (214)
T ss_dssp C
T ss_pred C
Confidence 3
No 460
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.31 E-value=6.6e-12 Score=122.69 Aligned_cols=91 Identities=26% Similarity=0.398 Sum_probs=82.1
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.||.|...+.+..+.+|+++.|.|.+. +. |.|+|+|+|..|..+.++.+..+++.+.|.|.+++.+|+|.|+|.|
T Consensus 18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~--~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a- 92 (113)
T 2edh_A 18 LPIKFTEGLRNEEATEGATAVLRCELS--KM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC- 92 (113)
T ss_dssp SCCCEEECCCCCEECTTSCEEEEEEES--SC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE-
T ss_pred CCCcccccCCceEEeCCCeEEEEEEEC--CC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe-
Confidence 467898999999999999999999997 43 5799999999999999999988888889999999999999999999
Q ss_pred cCCeeEEEEEEEEEEeecc
Q psy2148 995 NKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 995 N~~G~~~~~~~l~V~~~~~ 1013 (1884)
|..+..+.|.|..+|.
T Consensus 93 ---~~~~~~~~l~V~~~p~ 108 (113)
T 2edh_A 93 ---GKERTSAMLTVRAMPS 108 (113)
T ss_dssp ---TTEEEEEEEEECCCCC
T ss_pred ---CCCCEEEEEEEeCCCC
Confidence 7788899999987664
No 461
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.31 E-value=2.4e-11 Score=136.70 Aligned_cols=182 Identities=14% Similarity=0.240 Sum_probs=119.0
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCC--E---Ec--------------cCCCcEEEEee--CCeEEEEEccC
Q psy2148 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG--K---AL--------------SAGSRIKTIND--FGFVILEINDV 981 (1884)
Q Consensus 923 ~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g--~---~i--------------~~~~~~~~~~~--~~~~~L~I~~~ 981 (1884)
+..+.+.+|++|+|.|.+.+...+...+.|||.. . .+ ....|+.+..+ .+.+.|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (230)
T 3n9g_H 7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL 86 (230)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence 3467899999999999997422345689999831 1 11 01246666544 35678999999
Q ss_pred CCCCCeEEEEEEEcCC-----eeE---EEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCC
Q psy2148 982 YLRDSGLYTCKATNKH-----GEA---TTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNP 1053 (1884)
Q Consensus 982 ~~~D~G~Y~C~a~N~~-----G~~---~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1884)
+.+|+|.|.|.+.+.. +.. ...+.|.|...+. .+
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------------~~ 128 (230)
T 3n9g_H 87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAST--------------------------------------KG 128 (230)
T ss_dssp CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCC--------------------------------------BC
T ss_pred ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCC--------------------------------------CC
Confidence 9999999999999864 111 1234677753111 23
Q ss_pred CceeeecCCCcCcCCCCcEEEEEEEeeCCCC-CcEEEEEECCEeccCCCce--EEEeeCc----EEEEEEcccCcCCcEE
Q psy2148 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDP-TMRIDWFFNGRPFATGSRV--KTVYDFG----FISLDMDYVYARDSGE 1126 (1884)
Q Consensus 1054 p~~~~~~~~~~~v~~g~~~~l~C~v~~~~~p-~~~v~W~k~~~~l~~~~~~--~~~~~~~----~~~l~i~~~~~~d~G~ 1126 (1884)
|.+.... ....+.+|+.++|.|.+.+. .| .+.+.| +|..+..+... .....++ .+.|.|.....+| |.
T Consensus 129 P~v~~~~-~~~~~~~g~~v~L~C~~~~~-~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ 203 (230)
T 3n9g_H 129 PSVFPLA-PSSKSTSGGTAALGCLVKDY-FPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QT 203 (230)
T ss_dssp CEEEEEC-CCCCCCTTCEEEEEEEEEEE-BSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BC
T ss_pred CEEEecC-CCccccCCCCEEEEEEEEeE-ECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-Ce
Confidence 4433222 22345689999999999853 34 567999 66655432110 0111122 2468999999899 99
Q ss_pred EEEEEEcCCeeeEEEEEEEEe
Q psy2148 1127 YICRATNKWGTAMTKAKVICK 1147 (1884)
Q Consensus 1127 Y~C~a~n~~G~~~~~~~l~v~ 1147 (1884)
|+|.|.|..+.......+.|.
T Consensus 204 ytC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 204 YICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp CEEEEEEGGGTEEEEEECCCC
T ss_pred EEEEEEECCCCcceEEEccCC
Confidence 999999998877766666554
No 462
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9.9e-13 Score=125.44 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=79.8
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCC----cEEEEeeCCeEEEEEccCCCCCCeEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGS----RIKTINDFGFVILEINDVYLRDSGLYT 990 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 990 (1884)
.||.|...+.++.+.+|++++|.|.+. +.| +.|+|+|||..|..+. ++.+..+++.+.|.|.++..+|+|.|+
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~--~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 83 (101)
T 2edk_A 7 GPVLIVTPLEDQQVFVGDRVEMAVEVS--EEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQ 83 (101)
T ss_dssp CCCCEEECCCCEEEESSCCCBCCEEES--CSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEE
T ss_pred CCCEEEecCCceEEcCCCCEEEEEEEe--CCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEE
Confidence 678999999999999999999999998 566 8999999999998776 778888888889999999999999999
Q ss_pred EEEEcCCeeEEEEEEEEEEeec
Q psy2148 991 CKATNKHGEATTSCKLTVKGRQ 1012 (1884)
Q Consensus 991 C~a~N~~G~~~~~~~l~V~~~~ 1012 (1884)
|.|.| .+.++.|+|.++|
T Consensus 84 C~a~n----~~~~~~l~V~~~P 101 (101)
T 2edk_A 84 VITNG----GQCEAELIVEEKQ 101 (101)
T ss_dssp EECSS----CEECCBEEEECCC
T ss_pred EEEcC----CcEEEEEEEeCCC
Confidence 99987 3556788887643
No 463
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.7e-12 Score=125.69 Aligned_cols=96 Identities=31% Similarity=0.424 Sum_probs=83.9
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccC-CCcEEEEeeCCeEEEEEccCCCCCCeEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA-GSRIKTINDFGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
..||.|...+.++.+.+|+++.|.|.+. +.|.+.|.|+|+|..+.. ..++.+..++ +|.|.+++.+|+|.|+|.
T Consensus 6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~--g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~ 80 (118)
T 2eo9_A 6 SGPPVIRQGPVNQTVAVDGTFVLSCVAT--GSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCI 80 (118)
T ss_dssp CCSCCCSBCCCCEEEETTCEEEEECBCC--CSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEE
T ss_pred CCCCEEEcCCCCEEEcCCCeEEEEEEEE--ecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEE
Confidence 4689999999999999999999999998 778899999999999864 5566655433 699999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeeccc
Q psy2148 993 ATNKHGEATTSCKLTVKGRQGI 1014 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~~~ 1014 (1884)
|.|..|..+..+.|.|.+++.+
T Consensus 81 a~n~~g~~~~~~~l~V~~~~~p 102 (118)
T 2eo9_A 81 ASTPSGEATWSAYIEVQEFGVP 102 (118)
T ss_dssp EECSSCEEEEECCEEEECCSCC
T ss_pred EEcCCCcEEEEEEEEEEeCCCC
Confidence 9999999999999999876543
No 464
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.30 E-value=6.4e-12 Score=118.07 Aligned_cols=87 Identities=18% Similarity=0.414 Sum_probs=79.1
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.||.|...+....+.+|+.++|.|.+.|.| |.|.|+|+|..+..+.++.+. .+ .|.|.++..+|+|.|+|.|.|.
T Consensus 8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~-~~---~L~i~~~~~~D~G~Y~C~a~n~ 82 (95)
T 2ckn_A 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT-GE---EVEVRDSIPADSGLYACVTSSP 82 (95)
T ss_dssp CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC-SS---EEEESSCCGGGSEEEEEEEEET
T ss_pred CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe-CC---EEEECCCChHHCEEEEEEeccC
Confidence 578888888999999999999999999998 899999999999888887664 22 8999999999999999999999
Q ss_pred CeeEEEEEEEEE
Q psy2148 1821 AGEARCEAELVV 1832 (1884)
Q Consensus 1821 ~G~~~~~~~l~V 1832 (1884)
.|..+.++.|.|
T Consensus 83 ~g~~~~~~~l~V 94 (95)
T 2ckn_A 83 SGSDTTYFSVNV 94 (95)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCcEEEEEEEEE
Confidence 999999999887
No 465
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.30 E-value=6.2e-12 Score=120.37 Aligned_cols=92 Identities=24% Similarity=0.404 Sum_probs=81.4
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCC--CeEEeecCCeEEEEEccCCCCCCEEEEEEEE
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDI--RYKTLEEDNLFTLLIIEAVVEDSGAYECVAM 1818 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 1818 (1884)
.|+.|...+.+..+.+|++++|.|.+.+ |.|.|.|+|++..+..+. +|.+..++....|.|.++..+|+|.|+|.|.
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 84 (103)
T 1x44_A 6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTT 84 (103)
T ss_dssp SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEEC
Confidence 3555888888999999999999999988 779999999999998887 7788888888899999999999999999998
Q ss_pred eCCeeEEEEEEEEEEecCC
Q psy2148 1819 NNAGEARCEAELVVQSKKA 1837 (1884)
Q Consensus 1819 N~~G~~~~~~~l~V~~~~~ 1837 (1884)
| ...++.|.|.+++.
T Consensus 85 n----~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 85 G----GQSSAKLSVDLKSG 99 (103)
T ss_dssp T----EEEEEEEEEECCCS
T ss_pred C----CcEEEEEEEeCCCC
Confidence 8 57788999988653
No 466
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.29 E-value=4.6e-12 Score=123.81 Aligned_cols=104 Identities=26% Similarity=0.374 Sum_probs=90.9
Q ss_pred CceEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCe
Q psy2148 1718 GGKAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNL 1797 (1884)
Q Consensus 1718 ~g~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~ 1797 (1884)
.|....++.|.|.. .||.|...+.+..+.+|++++|.|.+.+. |.++|+|++..+..+.++.+..++..
T Consensus 4 ~g~~~~~~~l~V~~---------~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~ 72 (113)
T 2edh_A 4 GSSGRTSAMLTVRA---------LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGAR 72 (113)
T ss_dssp CCCCCCCCCCCCCC---------SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTE
T ss_pred CCCCcEEEEEEEEc---------CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCE
Confidence 35555667777774 47899998999999999999999999875 68999999999998999999888888
Q ss_pred EEEEEccCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecC
Q psy2148 1798 FTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1798 ~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
+.|.|.++..+|+|.|+|.| |....++.|.|.+.|
T Consensus 73 ~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~p 107 (113)
T 2edh_A 73 CELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMP 107 (113)
T ss_dssp EEEEECSCCSTTCEEEEEEE----TTEEEEEEEEECCCC
T ss_pred EEEEECCCChhhCEEEEEEe----CCCCEEEEEEEeCCC
Confidence 89999999999999999999 778889999998743
No 467
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-11 Score=149.01 Aligned_cols=178 Identities=12% Similarity=0.246 Sum_probs=113.5
Q ss_pred eecCCcee-ecCCCeEEEEEEEeeCC-CC-CcEEEEeeCCEEccCCCcE--EEEeeC---CeEEEEEccCCCCCCeEEEE
Q psy2148 920 LTTPTDLT-LAESTLAHFECRLTPTN-DP-SMTVEWFHNGKALSAGSRI--KTINDF---GFVILEINDVYLRDSGLYTC 991 (1884)
Q Consensus 920 ~~~~~~~~-v~~G~~v~l~C~v~~~~-~P-~~~v~W~~~g~~i~~~~~~--~~~~~~---~~~~L~I~~~~~~D~G~Y~C 991 (1884)
+..+.... +..|++++|.|.+.+.. .| ...|+|+|++.++...... .....+ ..+.|.|.+++.+|+|.|+|
T Consensus 171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C 250 (376)
T 2aty_A 171 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKC 250 (376)
T ss_pred EeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEE
Confidence 44555455 78999999999998531 13 2479999999776422110 001111 23479999999999999999
Q ss_pred EEEcCCeeEEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCc
Q psy2148 992 KATNKHGEATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGK 1071 (1884)
Q Consensus 992 ~a~N~~G~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~ 1071 (1884)
.|.|..+.......+.+. .. ...+|.+...... ....+|+.
T Consensus 251 ~~~~~~~~~~~~~~v~~~--~~------------------------------------~~~~P~v~v~~~~-~~~~~g~~ 291 (376)
T 2aty_A 251 RVNSAAFPAPIEKTISKT--KG------------------------------------RPKAPQLYTIPPP-KEQMAKDK 291 (376)
T ss_pred EEecCCCCCceEEEEcCC--CC------------------------------------CCcCCeEEeeCCC-HHHhcCCc
Confidence 999987754333333210 00 0134555443333 33446899
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEeccCCCceEE-EeeCc----EEEEEEcccCcCCcEEEEEEEEcCCe
Q psy2148 1072 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKT-VYDFG----FISLDMDYVYARDSGEYICRATNKWG 1136 (1884)
Q Consensus 1072 ~~l~C~v~~~~~p~~~v~W~k~~~~l~~~~~~~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~G 1136 (1884)
++|.|.+.+...|.+.|+|+|||+.+........ ...++ ...|.|.....+|.|.|+|.|.|..-
T Consensus 292 ~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 292 VSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred eEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 9999999843224678999999998854322111 12222 24577777777789999999998743
No 468
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.29 E-value=1.5e-11 Score=118.83 Aligned_cols=93 Identities=22% Similarity=0.317 Sum_probs=75.2
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCC---cEEEEeeCCEEc-c--CCCcEEEEee------CCeEEEEEccCC
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPS---MTVEWFHNGKAL-S--AGSRIKTIND------FGFVILEINDVY 982 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~---~~v~W~~~g~~i-~--~~~~~~~~~~------~~~~~L~I~~~~ 982 (1884)
..|.|+..+.++++.+|++++|.|.+. |.|. |.|+|+|++... . .+.++.+... .+...|.|.+++
T Consensus 3 p~p~f~~~p~~~~v~~G~~v~L~C~~~--g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 80 (108)
T 3cx2_A 3 PIGLFVMRPQDGEVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ 80 (108)
T ss_dssp CCCSCSBCCCCEEEETTCCEEEEEEEE--CC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCC
T ss_pred CccEEEeCCCcEEEeCCCCEEEEEEEC--CCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCC
Confidence 358888999999999999999999999 6677 899999987322 1 1235544321 124589999999
Q ss_pred CCCCeEEEEEEEcCCeeEEEEEEEEEE
Q psy2148 983 LRDSGLYTCKATNKHGEATTSCKLTVK 1009 (1884)
Q Consensus 983 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 1009 (1884)
.+|+|.|+|.|.|..|..++.+.|.|.
T Consensus 81 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 81 PAFTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CccCEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999999986
No 469
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.6e-12 Score=120.80 Aligned_cols=92 Identities=24% Similarity=0.422 Sum_probs=84.3
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.||.|...+.+..+.+|++++|.|.+.+ |.+.|.|+|++..+..+.++.+..++..+.|.|.++..+|+|.|+|.|.|
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n- 84 (103)
T 2edf_A 7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA- 84 (103)
T ss_dssp CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS-
T ss_pred CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc-
Confidence 6899999999999999999999999998 88899999999999888899988888888999999999999999999999
Q ss_pred CeeEEEEEEEEEEecCC
Q psy2148 1821 AGEARCEAELVVQSKKA 1837 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~~~~ 1837 (1884)
...++.|.|.++|.
T Consensus 85 ---~~~~~~l~V~~~p~ 98 (103)
T 2edf_A 85 ---SKSTASLHVEEKAS 98 (103)
T ss_dssp ---CEEEEEEEECCCSS
T ss_pred ---CCcEEEEEEeCCCC
Confidence 47788999987653
No 470
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=3.4e-12 Score=121.36 Aligned_cols=90 Identities=30% Similarity=0.458 Sum_probs=79.7
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.||.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|+|..+....... ......|.|.++..+|+|.|+|.|.|.
T Consensus 10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 86 (99)
T 2yr3_A 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC---EAGVAELHIQDALPEDHGTYTCLAENA 86 (99)
T ss_dssp EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE---ETTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe---eCCeEEEEECCCChhhCEEEEEEEEEC
Confidence 58899999999999999999999999999999999999999887654432 234568999999999999999999999
Q ss_pred CeeEEEEEEEEEE
Q psy2148 1821 AGEARCEAELVVQ 1833 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~ 1833 (1884)
.|..+.++.|.|+
T Consensus 87 ~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 87 LGQVSCSAWVTVH 99 (99)
T ss_dssp SCEEEEECCEEEC
T ss_pred CCeEEEEEEEEEC
Confidence 9999999988874
No 471
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=3.5e-12 Score=122.91 Aligned_cols=92 Identities=27% Similarity=0.380 Sum_probs=81.7
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
..+|.|...+.++++.+|+++.|.|.+. +.|.+ |.|+|+|..+..+.++.+..++..+.|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~--~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (106)
T 2dlt_A 6 SGQLEVLQDIADLTVKAAEQAVFKCEVS--DEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVP 82 (106)
T ss_dssp CCCCCEEECCCCEEEESSCCEECCCEES--CSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEE
T ss_pred CCCCEEecCCCCeEEeCCCeEEEEEEEc--CCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEE
Confidence 3689999999999999999999999998 66666 99999999999989999888888889999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEe
Q psy2148 994 TNKHGEATTSCKLTVKG 1010 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~ 1010 (1884)
.|. ..+..+.|.|..
T Consensus 83 ~n~--~~~~~~~l~V~~ 97 (106)
T 2dlt_A 83 DGY--ALSLSAKLNFLE 97 (106)
T ss_dssp ETS--CCCCCBCEEEEC
T ss_pred ccC--CceEEEEEEEEE
Confidence 998 455667777763
No 472
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.28 E-value=5.3e-11 Score=124.42 Aligned_cols=160 Identities=13% Similarity=0.142 Sum_probs=106.5
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCCcEEEEee-CCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEEcCCee
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFH-NGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGE 999 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~-~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 999 (1884)
..+++..|.+|+++.|+|.++. ..|. .+.|.- .++.+. .....+...|.|.+++. | |.|.|.+.+....
T Consensus 4 v~P~~~~V~~G~Sv~l~Cs~~c-~~p~-~~~~~t~l~~~~~------~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~ 73 (185)
T 1iam_A 4 VSPSKVILPRGGSVLVTCSTSC-DQPK-LLGIETPLPKKEL------LLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQ 73 (185)
T ss_dssp EESSEEEEETTEEEEEEEEECS-SSCS-EEEEECSSCEEEE------CSSSSSEEEEEEEEECS-C-BCCEEEEECSSCE
T ss_pred EECCCcEEeCCCCEEEEEEccC-CCCc-cceEEeeCCCccE------eccCCceeEEEEEecCc-C-CEEEEEEECCCCc
Confidence 4456778999999999999973 2332 467753 111111 01112344689999984 4 9999999877667
Q ss_pred EEEEEEEEEEeecccccccchhHhHhcchhhHHHHHHhhcccCcCCCCCCCCCCCceeeecCCCcCcCCCCcEEEEEEEe
Q psy2148 1000 ATTSCKLTVKGRQGIDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQLQDNLDVPEAGKVHFDCRLE 1079 (1884)
Q Consensus 1000 ~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~v~ 1079 (1884)
.+..+.|+|..+|..+ ..... ...+.+|+.++|.|.+.
T Consensus 74 ~~~~~~l~V~~~P~~v-----------------------------------------~i~~~-~~~~~~G~~~tL~C~v~ 111 (185)
T 1iam_A 74 STAKTFLTVYWTPERV-----------------------------------------ELAPL-PSWQPVGKQLTLRCQVE 111 (185)
T ss_dssp EEEECEEEEEBCCSEE-----------------------------------------EECCC-CSEECTTSEEEEEEEEE
T ss_pred eEEEEEEEEeCCCCCC-----------------------------------------EEccC-CccccCCCcEEEEEEcC
Confidence 7888899998654321 11111 13367999999999998
Q ss_pred eCCCCCc--EEEEEECCEeccCCCceEEEeeCcEEEEEEcccCcCCcEEEEEEEEcCCe
Q psy2148 1080 PKSDPTM--RIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWG 1136 (1884)
Q Consensus 1080 ~~~~p~~--~v~W~k~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~G 1136 (1884)
+ +.|.. .|+|||+++.+.... ...+....+|.+.....+|...|+|+|.|.++
T Consensus 112 g-~~P~~~l~i~w~kg~~~l~~~~---~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 112 G-GAPRAQLTVVLLRGEKELKREP---AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp C-CBCGGGEEEEEEETTEEEEEEE---CCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred C-ccCCCCcEEEEEeCCEEccccc---CCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence 3 45653 589999999986421 11123334677775555566699999999877
No 473
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.28 E-value=1.2e-11 Score=116.07 Aligned_cols=88 Identities=23% Similarity=0.347 Sum_probs=79.3
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.+|.|...+.++.+.+|+++.|.|.+ +.|.+.|.|+|+|..|..+.++.+..++..++|.|.+++.+|+|.|+|.|
T Consensus 7 ~~~~~~~~~~~~~v~~G~~v~l~C~~---~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a- 82 (95)
T 2k1m_A 7 PVSAFSKKPRSVEVAAGSPAVFEAET---ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA- 82 (95)
T ss_dssp CCCCCSBCCCCEEEETTSCEEEEEEC---SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE-
T ss_pred CCCeeEeCCCcEEEeCCCcEEEEEEe---CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE-
Confidence 45788888999999999999999999 45778999999999999888999888888889999999999999999999
Q ss_pred cCCeeEEEEEEEEEE
Q psy2148 995 NKHGEATTSCKLTVK 1009 (1884)
Q Consensus 995 N~~G~~~~~~~l~V~ 1009 (1884)
|..+..+.|.|.
T Consensus 83 ---g~~~~~~~l~V~ 94 (95)
T 2k1m_A 83 ---GSSKVKFDLKVI 94 (95)
T ss_dssp ---TTEEEEEEEEEE
T ss_pred ---CCceEEEEEEEe
Confidence 667788888885
No 474
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.27 E-value=2.1e-11 Score=115.94 Aligned_cols=90 Identities=27% Similarity=0.479 Sum_probs=82.3
Q ss_pred CCCeEEeccCc-eEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISS-AVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~-~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.+|.|...+.+ ..+.+|++++|.|.+. .|.|.|.|+|+|..+..+.++.+..++....|.|.++..+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-- 82 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA-- 82 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence 58999988887 6888999999999998 7999999999999999888999988888889999999999999999999
Q ss_pred CCeeEEEEEEEEEEec
Q psy2148 1820 NAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~~ 1835 (1884)
|....++.|.|.++
T Consensus 83 --g~~~~~~~l~V~~~ 96 (100)
T 2yuv_A 83 --GDEKCSTELFVRSG 96 (100)
T ss_dssp --TTEEEEEEEEECCS
T ss_pred --CCceEEEEEEEecC
Confidence 77888999999874
No 475
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=7.7e-12 Score=120.09 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=81.3
Q ss_pred CCCeEEeccCc---eEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEE
Q psy2148 1741 VPPSFLTTISS---AVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVA 1817 (1884)
Q Consensus 1741 ~~P~~~~~~~~---~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 1817 (1884)
.+|.+...+.. ..+.+|++++|.|.+.|.|.| |.|+|++..+..+.++.+..++....|.|.++..+|+|.|+|.|
T Consensus 6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 84 (104)
T 2e6p_A 6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT 84 (104)
T ss_dssp SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence 46777777777 789999999999999999999 99999999999888998888888889999999999999999999
Q ss_pred EeCCeeEEEEEEEEEEecCC
Q psy2148 1818 MNNAGEARCEAELVVQSKKA 1837 (1884)
Q Consensus 1818 ~N~~G~~~~~~~l~V~~~~~ 1837 (1884)
.|..+ .+.|.|.++|.
T Consensus 85 ~n~~~----~~~l~V~~~P~ 100 (104)
T 2e6p_A 85 EGVSA----FFGVTVQDPSG 100 (104)
T ss_dssp SSCCC----CEEEEEECCCC
T ss_pred CCceE----EEEEEEcCCCC
Confidence 99754 67888887553
No 476
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=5.2e-12 Score=120.54 Aligned_cols=92 Identities=16% Similarity=0.285 Sum_probs=82.5
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCC-cEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKP-LDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.||.|...+.+..+.+|++++|.|.+.+.|. +.+.|+|||..+..+.++.+..++..+.|.|.++..+|+|.|+|.|.|
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 86 (104)
T 2eny_A 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG 86 (104)
T ss_dssp CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC
Confidence 4678888889999999999999999999875 489999999999988999998888888999999999999999999854
Q ss_pred CCeeEEEEEEEEEEecC
Q psy2148 1820 NAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~~~ 1836 (1884)
...++.|.|.++|
T Consensus 87 ----~~~~a~L~V~~~p 99 (104)
T 2eny_A 87 ----LTSKASLIVRERS 99 (104)
T ss_dssp ----EEEEECEEEECCC
T ss_pred ----eeEEEEEEEeCCC
Confidence 5688999999854
No 477
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.26 E-value=1.4e-11 Score=117.29 Aligned_cols=91 Identities=23% Similarity=0.326 Sum_probs=78.8
Q ss_pred ccCCCCeeeecCCc-eeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCC-CcEEEEeeCCeEEEEEccCCCCCCeEE
Q psy2148 912 DLGKAPEFLTTPTD-LTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAG-SRIKTINDFGFVILEINDVYLRDSGLY 989 (1884)
Q Consensus 912 ~~~~~p~~~~~~~~-~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y 989 (1884)
....+|.|+..+.+ ..+.+|+++.|.|.+ +.|.+.|+|+|+|..|..+ .++.+..+++.+.|.|.+++.+|+|.|
T Consensus 11 ~~~~~p~f~~~~~~~~~v~~G~~v~L~C~~---~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 87 (104)
T 1pd6_A 11 DEKKSTAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAY 87 (104)
T ss_dssp CCSTTSSCSEECCSEEEEETTSCEEEEEEC---SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEE
T ss_pred CccCCCEEEEcCCCcEEEecCCCEEEEEEE---cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEE
Confidence 34578999988887 889999999999999 3577789999999999887 788888788888999999999999999
Q ss_pred EEEEEcCCeeEEEEEEEEEE
Q psy2148 990 TCKATNKHGEATTSCKLTVK 1009 (1884)
Q Consensus 990 ~C~a~N~~G~~~~~~~l~V~ 1009 (1884)
+|.| |..+.++.|+|.
T Consensus 88 ~C~a----~~~~~~~~l~V~ 103 (104)
T 1pd6_A 88 QCVV----GGEKCSTELFVK 103 (104)
T ss_dssp EEEE----TTEEECCEEEEE
T ss_pred EEEE----CCCcEEEEEEEe
Confidence 9999 446677788875
No 478
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.25 E-value=1.9e-11 Score=117.95 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=75.9
Q ss_pred CCeEEeccCceEEcCCceEEEEEEEecCCC---cEEEEEeCCEecC---CCCCeEEeec------CCeEEEEEccCCCCC
Q psy2148 1742 PPSFLTTISSAVINVGQLARFDAKISATKP---LDVYWLKNGKKII---PDIRYKTLEE------DNLFTLLIIEAVVED 1809 (1884)
Q Consensus 1742 ~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~---p~v~W~k~~~~l~---~~~~~~~~~~------~~~~~L~i~~~~~~d 1809 (1884)
.|.|...|.+..+.+|++++|.|.+.|.|. |.|+|+|++.... ...++.+... .....|.|.+++.+|
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 688888899999999999999999999998 9999999873221 1235554321 124689999999999
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEE
Q psy2148 1810 SGAYECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1810 ~G~Y~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
+|.|+|.|.|..|..+++++|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999986
No 479
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.4e-11 Score=118.82 Aligned_cols=98 Identities=18% Similarity=0.308 Sum_probs=81.9
Q ss_pred CCCCeeeecCCc---eeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEE
Q psy2148 914 GKAPEFLTTPTD---LTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYT 990 (1884)
Q Consensus 914 ~~~p~~~~~~~~---~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 990 (1884)
..||.++..+.+ +.+.+|+.+.|.|.+. .|.+.+.|+|+|..+..+.++.+..++...+|.|.+++.+|+|.|+
T Consensus 8 ~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~---~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 84 (113)
T 2cpc_A 8 TDVSSWIVYPSGKVYVAAVRLERVVLTCELC---RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYL 84 (113)
T ss_dssp CSCSCSEEESCSCEEEEEETTCCEEEEEEES---CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEE
T ss_pred ccCCcEEEccCCceeEEEEcCCeEEEEEEec---CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEE
Confidence 346666655555 7888999999999994 5778999999999999888988887777789999999999999999
Q ss_pred EEEEcCCeeEEEEEEEEEEeeccccccc
Q psy2148 991 CKATNKHGEATTSCKLTVKGRQGIDVEP 1018 (1884)
Q Consensus 991 C~a~N~~G~~~~~~~l~V~~~~~~~~~p 1018 (1884)
|.|.| .+..+.|.|..+|.+...|
T Consensus 85 C~a~n----~~~~~~l~V~~~p~~~~~p 108 (113)
T 2cpc_A 85 CEIDD----ESASFTVTVTEPPVRIIYS 108 (113)
T ss_dssp EESSS----CEEEEEEEEECCCCCCCCC
T ss_pred EEEec----CcEEEEEEEecCCchhccC
Confidence 99998 5678899999887655443
No 480
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.5e-12 Score=124.12 Aligned_cols=98 Identities=22% Similarity=0.391 Sum_probs=84.7
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEE-eeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTI-NDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
.|+.|...+.++++.+|++++|.|.+. +.|.|.|+|+|||..|..+.++.+. .+++.+.|.|.+++.+|+|.|+|.+
T Consensus 12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 89 (115)
T 2cr6_A 12 RRVHIIEDLEDVDVQEGSSATFRCRIS--PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA 89 (115)
T ss_dssp SCCEEEECCCEEEEETTSCEECCCEEE--STTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE
T ss_pred CCCeEeccCccEEEeCCCcEEEEEEEc--CCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE
Confidence 356888999999999999999999998 7788899999999999988887776 3456678999999999999999995
Q ss_pred EcCCeeEEEEEEEEEEeeccccccc
Q psy2148 994 TNKHGEATTSCKLTVKGRQGIDVEP 1018 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~~~~~p 1018 (1884)
|..+..+.|.|..+|.+...|
T Consensus 90 ----g~~~~~~~L~V~~~p~~~~~~ 110 (115)
T 2cr6_A 90 ----GDQRASAALRVTEKPSVFSRS 110 (115)
T ss_dssp ----TTEECCEEEEEECCSSCCSSS
T ss_pred ----CCeeEEEEEEEECCCceeccC
Confidence 778888999999888765443
No 481
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7e-12 Score=119.78 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=77.3
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecC---CCcEEEEEeCCE-ecCC--CCCeEEeec--C----CeEEEEEccCCCC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISAT---KPLDVYWLKNGK-KIIP--DIRYKTLEE--D----NLFTLLIIEAVVE 1808 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~---p~p~v~W~k~~~-~l~~--~~~~~~~~~--~----~~~~L~i~~~~~~ 1808 (1884)
..+.|...|.+..+.+|++++|.|.+.|. |.|.|+|||++. .+.. ..++.+... . ..+.|+|.++...
T Consensus 11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 90 (118)
T 2edn_A 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG 90 (118)
T ss_dssp CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence 35678888999999999999999999985 789999999752 2221 345554321 1 2579999999999
Q ss_pred CCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2148 1809 DSGAYECVAMNNAGEARCEAELVVQS 1834 (1884)
Q Consensus 1809 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 1834 (1884)
|+|.|+|+|+|..|..++.++|+|.+
T Consensus 91 D~G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 91 DRGYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp TCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred hCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence 99999999999999999999999986
No 482
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=117.60 Aligned_cols=92 Identities=29% Similarity=0.425 Sum_probs=83.2
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.||.|...+.++.+.+|++++|.|.+ +.|.+.|+|+|++..|..+.++.+..+++.+.|.|.+++.+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~---~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~-- 81 (103)
T 2dku_A 7 GANCFTEELTNLQVEEKGTAVFTCKT---EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD-- 81 (103)
T ss_dssp CCCCCSSCCCCEEEETTSEEEEEEEC---SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE--
T ss_pred CCCEeEecCCcEEEeCCCcEEEEEEe---CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE--
Confidence 57899999999999999999999994 5678899999999999999999988888888999999999999999998
Q ss_pred cCCeeEEEEEEEEEEeecc
Q psy2148 995 NKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 995 N~~G~~~~~~~l~V~~~~~ 1013 (1884)
.|..+..+.|.|.+.|.
T Consensus 82 --~g~~~~~~~l~V~~~p~ 98 (103)
T 2dku_A 82 --IGQAQSRAQLLVQGRRS 98 (103)
T ss_dssp --CSSCBCCEEEEEECSCC
T ss_pred --eCCceEEEEEEEeCccC
Confidence 57888889999987664
No 483
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.24 E-value=1.1e-10 Score=122.06 Aligned_cols=157 Identities=10% Similarity=0.025 Sum_probs=108.2
Q ss_pred cCCceeecCCCeEEEEEEEeccCCCe-EEEEeC-CeecCCCCCeEEEEeCceeEEEEcccccCCCeEEEEEEEeCCceEE
Q psy2148 1645 KIQPCRAFEQDQARFEVEFDGDPLPT-IKWFRE-DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAK 1722 (1884)
Q Consensus 1645 ~~~~~~v~~G~~~~l~C~~~g~p~~~-i~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~DsG~Y~C~a~n~~g~~~ 1722 (1884)
.+....|.+|+++.|.|.+. .+.|. +.|... ++.... ........|.|.++.. | |.|.|.+.+......
T Consensus 5 ~P~~~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~------~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~ 75 (185)
T 1iam_A 5 SPSKVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELL------LPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQST 75 (185)
T ss_dssp ESSEEEEETTEEEEEEEEEC-SSSCSEEEEECSSCEEEEC------SSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEE
T ss_pred ECCCcEEeCCCCEEEEEEcc-CCCCccceEEeeCCCccEe------ccCCceeEEEEEecCc-C-CEEEEEEECCCCceE
Confidence 34567799999999999997 45555 677531 111110 0012335699999973 4 999999866555677
Q ss_pred EEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc--EEEEEeCCEecCCCCCeEEeecCCeEE
Q psy2148 1723 CSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL--DVYWLKNGKKIIPDIRYKTLEEDNLFT 1799 (1884)
Q Consensus 1723 ~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p--~v~W~k~~~~l~~~~~~~~~~~~~~~~ 1799 (1884)
..+.|+|... |......+....+.+|+.++|.|.+.| .|.+ .|+|+|+++++.... ...+....+
T Consensus 76 ~~~~l~V~~~---------P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~---~~~~~~~~t 143 (185)
T 1iam_A 76 AKTFLTVYWT---------PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP---AVGEPAEVT 143 (185)
T ss_dssp EECEEEEEBC---------CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE---CCTTTEEEE
T ss_pred EEEEEEEeCC---------CCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc---CCCccccEE
Confidence 8889999852 333445555567999999999999998 5553 599999999985422 111223346
Q ss_pred EEEccCCCCCCEEEEEEEEeCCe
Q psy2148 1800 LLIIEAVVEDSGAYECVAMNNAG 1822 (1884)
Q Consensus 1800 L~i~~~~~~d~G~Y~C~a~N~~G 1822 (1884)
|++.....+|...|+|.|.|.++
T Consensus 144 l~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 144 TTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp EEEECCSSCSSCEEEEEEEEECG
T ss_pred EEEeceeccCCCeEEEEEEecCc
Confidence 77775555555599999999987
No 484
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.1e-11 Score=114.71 Aligned_cols=91 Identities=19% Similarity=0.290 Sum_probs=80.0
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCC----------CeEEeecCCeEEEEEccCCCCCC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDI----------RYKTLEEDNLFTLLIIEAVVEDS 1810 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~----------~~~~~~~~~~~~L~i~~~~~~d~ 1810 (1884)
.+|.|...+.+..+.+|+.+.|.|.+.+ .|.+.|+|||++|..+. ++.+..++..++|+|.++..+|+
T Consensus 7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~ 84 (112)
T 2e6q_A 7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS 84 (112)
T ss_dssp SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence 3688999999999999999999999998 67899999999999887 89988888889999999999999
Q ss_pred EEEEEEEEeCCeeEEEEEEEEEEecC
Q psy2148 1811 GAYECVAMNNAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1811 G~Y~C~a~N~~G~~~~~~~l~V~~~~ 1836 (1884)
|.|+|...+ ....++.|+|.+.|
T Consensus 85 G~Y~~~~~~---~~~ssA~L~V~~~p 107 (112)
T 2e6q_A 85 GALVGFSCP---GVQDSAALTIQESS 107 (112)
T ss_dssp SEEEEEEET---TEEEEEEEEEECSS
T ss_pred ccEEEEEEC---CeeEEEEEEEeCCC
Confidence 999774433 35678999999853
No 485
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.8e-12 Score=121.31 Aligned_cols=90 Identities=28% Similarity=0.536 Sum_probs=80.8
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCC----CeEEeecCCeEEEEEccCCCCCCEEEEEE
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDI----RYKTLEEDNLFTLLIIEAVVEDSGAYECV 1816 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 1816 (1884)
.||.|...+.+..+.+|++++|.|.+.+.| |.+.|+|+|..+..+. ++.+..++....|.|.++..+|+|.|+|.
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 85 (101)
T 2edk_A 7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVI 85 (101)
T ss_dssp CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEE
T ss_pred CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEE
Confidence 578999999999999999999999999998 9999999999998776 77888888888999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEec
Q psy2148 1817 AMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1817 a~N~~G~~~~~~~l~V~~~ 1835 (1884)
|.| ...++.|.|.++
T Consensus 86 a~n----~~~~~~l~V~~~ 100 (101)
T 2edk_A 86 TNG----GQCEAELIVEEK 100 (101)
T ss_dssp CSS----CEECCBEEEECC
T ss_pred EcC----CcEEEEEEEeCC
Confidence 988 456678888763
No 486
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.23 E-value=1.1e-11 Score=118.62 Aligned_cols=92 Identities=26% Similarity=0.435 Sum_probs=83.1
Q ss_pred CCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEEE
Q psy2148 915 KAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT 994 (1884)
Q Consensus 915 ~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 994 (1884)
.||.|...+.++.+.+|++++|.|.+. +.|.+ |+|+|++..+..+.++.+..++..+.|.|.+++.+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~--~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~-- 81 (103)
T 2e7b_A 7 GPVRFQEALKDLEVLEGGAATLRCVLS--SVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS-- 81 (103)
T ss_dssp CCCCCTBCCCCEEEESSSCEEEEEECS--SCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE--
T ss_pred CCCEEEecCccEEEECCCcEEEEEEEe--CCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE--
Confidence 688999999999999999999999998 66777 9999999999988899998888888999999999999999998
Q ss_pred cCCeeEEEEEEEEEEeecc
Q psy2148 995 NKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 995 N~~G~~~~~~~l~V~~~~~ 1013 (1884)
+|..+..+.|.|..+|.
T Consensus 82 --~g~~~~~~~l~V~~~p~ 98 (103)
T 2e7b_A 82 --FGDQTTSATLTVTALPS 98 (103)
T ss_dssp --CSSCBCCBCEEEECCCC
T ss_pred --ECCcEEEEEEEEEeccc
Confidence 47778888999987664
No 487
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=1.2e-11 Score=119.02 Aligned_cols=91 Identities=23% Similarity=0.298 Sum_probs=83.2
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.+|.|...+.+..+.+|++++|.|.+.+.|.+ ++|+|+|..+..+.++.+..++....|.|.++..+|+|.|+|.|.|.
T Consensus 7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 85 (106)
T 2dlt_A 7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY 85 (106)
T ss_dssp CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC
Confidence 58999999999999999999999999999888 99999999999889999888888889999999999999999999998
Q ss_pred CeeEEEEEEEEEEe
Q psy2148 1821 AGEARCEAELVVQS 1834 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~ 1834 (1884)
..+.++.|.|.+
T Consensus 86 --~~~~~~~l~V~~ 97 (106)
T 2dlt_A 86 --ALSLSAKLNFLE 97 (106)
T ss_dssp --CCCCCBCEEEEC
T ss_pred --CceEEEEEEEEE
Confidence 555677788875
No 488
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.23 E-value=1.8e-11 Score=116.65 Aligned_cols=90 Identities=28% Similarity=0.471 Sum_probs=74.1
Q ss_pred CCCeeeecC----CceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCc---EEEEeeCCeEEEEEccCCCCCCe
Q psy2148 915 KAPEFLTTP----TDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSR---IKTINDFGFVILEINDVYLRDSG 987 (1884)
Q Consensus 915 ~~p~~~~~~----~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~---~~~~~~~~~~~L~I~~~~~~D~G 987 (1884)
.||.|+..+ +.+.+.+|+.+.|.|.+. +.|.+.|.|+|+|..+....+ +..... ..+|.|.+++.+|+|
T Consensus 3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G 78 (100)
T 3caf_A 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ--HWSLIMESVVPSDKG 78 (100)
T ss_dssp EEEEESCTTTTSCCEEEECTTCCEEEECCEE--EESCCEEEEEETTEECCGGGSTTCCEEEGG--GTEEEECSCCGGGCE
T ss_pred CCCEeEcCccccccEEEecCCCEEEEEEEcc--ccCCCEEEEEECCEEcccccccccEEEecC--eEEEEEccCCcCCCE
Confidence 467777544 467899999999999998 678889999999999976544 233322 237999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEEEE
Q psy2148 988 LYTCKATNKHGEATTSCKLTV 1008 (1884)
Q Consensus 988 ~Y~C~a~N~~G~~~~~~~l~V 1008 (1884)
.|+|.|.|..|..+..+.|.|
T Consensus 79 ~Y~C~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 79 NYTCVVENEYGSINHTYHLDV 99 (100)
T ss_dssp EEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEeCCCEEEEEEEEEE
Confidence 999999999999999888887
No 489
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.22 E-value=9.5e-11 Score=130.34 Aligned_cols=168 Identities=15% Similarity=0.141 Sum_probs=110.3
Q ss_pred eeecCCceeecCCCeEEEEEEEeccC--CCeEEEEeCC--e---ecC---------CCCCeEEEEe--CceeEEEEcccc
Q psy2148 1642 FTKKIQPCRAFEQDQARFEVEFDGDP--LPTIKWFRED--F---PIT---------SSPDFQIHTF--STKSILIMRQVF 1703 (1884)
Q Consensus 1642 ~~~~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~~--~---~~~---------~~~~~~~~~~--~~~~~L~i~~v~ 1703 (1884)
+...+..+.+.+|++++|.|.+.|.+ .+.+.|+|.. . .+. ...++.+... ....+|.|.+++
T Consensus 4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 83 (229)
T 1hxm_A 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (229)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence 34556778899999999999998754 4789999853 1 110 1356666543 455789999999
Q ss_pred cCCCeEEEEEEEeCC------c--eEEEEEEEEEEecccCCCCCCCCCeEEeccCceEEcCCceEEEEEEEec-CCCc-E
Q psy2148 1704 MEDSGVFAVIAENRG------G--KAKCSANLVVEEKRQGGRGGVVPPSFLTTISSAVINVGQLARFDAKISA-TKPL-D 1773 (1884)
Q Consensus 1704 ~~DsG~Y~C~a~n~~------g--~~~~~~~l~V~~~~~~~~~~~~~P~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~ 1773 (1884)
.+|+|.|.|.+.+.. + .......|.|...... ..+|.+.... ..++|.|.+.| +|.+ .
T Consensus 84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~----~~~P~v~~~~--------~~~~L~C~~~g~~P~~i~ 151 (229)
T 1hxm_A 84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQP----HTKPSVFVMK--------NGTNVACLVKEFYPKDIR 151 (229)
T ss_dssp GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCC----CBCCEEEEEE--------ETTEEEEEEESCBSSCCE
T ss_pred HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCC----CcCCcEEEcC--------CCCeEEEEEEEEeCCCEE
Confidence 999999999998863 1 1223357888742211 1356655422 12489999998 4654 8
Q ss_pred EEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeCCee
Q psy2148 1774 VYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGE 1823 (1884)
Q Consensus 1774 v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 1823 (1884)
|+|+++ +.+...........++.+.+. .....+|.|.|+|.|.|..+.
T Consensus 152 v~W~~~-~~~~~~~~~~~~~~dg~y~~~-~~~~~~~~~~ytC~V~h~~~~ 199 (229)
T 1hxm_A 152 INLVSS-KKITEFDPAIVISPSGKYNAV-KLGKYEDSNSVTCSVQHDNKT 199 (229)
T ss_dssp EEEECS-SEEEECCCEEEECTTSSEEEE-EEEEETTTTTCEEEEEETTEE
T ss_pred EEEecC-CEEecCccceEECCCCcEEEE-ECcccCCCCcEEEEEEeCCCC
Confidence 999999 766543222222333433333 222236789999999999764
No 490
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3.4e-12 Score=125.04 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=81.2
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEe-ecCCeEEEEEccCCCCCCEEEEEEEEe
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTL-EEDNLFTLLIIEAVVEDSGAYECVAMN 1819 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N 1819 (1884)
.|+.|...+.+..+.+|++++|.|.+.|.|.|.|+|+|+|..+..+.++.+. .+++.+.|.|.++..+|+|.|+|.
T Consensus 12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--- 88 (115)
T 2cr6_A 12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE--- 88 (115)
T ss_dssp SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEE---
T ss_pred CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEE---
Confidence 3568888899999999999999999999999999999999999888887765 346667899999999999999999
Q ss_pred CCeeEEEEEEEEEEecC
Q psy2148 1820 NAGEARCEAELVVQSKK 1836 (1884)
Q Consensus 1820 ~~G~~~~~~~l~V~~~~ 1836 (1884)
+|....++.|.|.++|
T Consensus 89 -~g~~~~~~~L~V~~~p 104 (115)
T 2cr6_A 89 -AGDQRASAALRVTEKP 104 (115)
T ss_dssp -ETTEECCEEEEEECCS
T ss_pred -ECCeeEEEEEEEECCC
Confidence 4778888999999743
No 491
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.22 E-value=2.4e-11 Score=114.08 Aligned_cols=89 Identities=25% Similarity=0.380 Sum_probs=80.5
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
..|.|...+.+..+.+|+++.|.|.+ +.|.+.|.|+|+|..+..+.++.+..++....|.|.++..+|+|.|+|.|
T Consensus 7 ~~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a--- 82 (95)
T 2k1m_A 7 PVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA--- 82 (95)
T ss_dssp CCCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE---
T ss_pred CCCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE---
Confidence 45778888899999999999999999 88899999999999999888999888888889999999999999999999
Q ss_pred CeeEEEEEEEEEEe
Q psy2148 1821 AGEARCEAELVVQS 1834 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~ 1834 (1884)
|....++.|.|.+
T Consensus 83 -g~~~~~~~l~V~e 95 (95)
T 2k1m_A 83 -GSSKVKFDLKVIE 95 (95)
T ss_dssp -TTEEEEEEEEEEC
T ss_pred -CCceEEEEEEEeC
Confidence 6677888888863
No 492
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.22 E-value=2.1e-11 Score=116.09 Aligned_cols=91 Identities=25% Similarity=0.419 Sum_probs=75.5
Q ss_pred CCCeEEecc----CceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCC---eEEeecCCeEEEEEccCCCCCCEEE
Q psy2148 1741 VPPSFLTTI----SSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIR---YKTLEEDNLFTLLIIEAVVEDSGAY 1813 (1884)
Q Consensus 1741 ~~P~~~~~~----~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y 1813 (1884)
.||.|...+ ....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+ +..... ...|.|.++..+|+|.|
T Consensus 3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y 80 (100)
T 3caf_A 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ--HWSLIMESVVPSDKGNY 80 (100)
T ss_dssp EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGG--GTEEEECSCCGGGCEEE
T ss_pred CCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecC--eEEEEEccCCcCCCEEE
Confidence 367777544 467788999999999999999999999999999876543 333322 23899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEE
Q psy2148 1814 ECVAMNNAGEARCEAELVVQ 1833 (1884)
Q Consensus 1814 ~C~a~N~~G~~~~~~~l~V~ 1833 (1884)
+|.|.|..|....++.|.|.
T Consensus 81 ~C~a~N~~g~~~~~~~l~Vv 100 (100)
T 3caf_A 81 TCVVENEYGSINHTYHLDVV 100 (100)
T ss_dssp EEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEeCCCEEEEEEEEEEC
Confidence 99999999999999999873
No 493
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.21 E-value=2.2e-11 Score=117.85 Aligned_cols=89 Identities=24% Similarity=0.381 Sum_probs=80.1
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcEEEEEeCCEecCCCCCeEEeecCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 1820 (1884)
.||.|...+.+..+.+|++++|.|.+.+. |.|.|+|++..+..+.++.+..++..+.|.|.++..+|+|.|+|.|.|
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n- 83 (108)
T 2dm7_A 7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ- 83 (108)
T ss_dssp CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT-
T ss_pred CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC-
Confidence 68999888899999999999999999876 689999999999988999988888888999999999999999999954
Q ss_pred CeeEEEEEEEEEEec
Q psy2148 1821 AGEARCEAELVVQSK 1835 (1884)
Q Consensus 1821 ~G~~~~~~~l~V~~~ 1835 (1884)
...++.|.|...
T Consensus 84 ---~~~~~~l~V~~~ 95 (108)
T 2dm7_A 84 ---ERTSATLTVRAL 95 (108)
T ss_dssp ---EEEEEECEEECC
T ss_pred ---CEEEEEEEEecC
Confidence 577888999874
No 494
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.21 E-value=5e-12 Score=125.55 Aligned_cols=100 Identities=17% Similarity=0.295 Sum_probs=84.4
Q ss_pred cccccCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcE-EEEeeCCEEccC--CCcEEEE--eeCC--eEEEEEccC
Q psy2148 909 IEEDLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMT-VEWFHNGKALSA--GSRIKTI--NDFG--FVILEINDV 981 (1884)
Q Consensus 909 ~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~-v~W~~~g~~i~~--~~~~~~~--~~~~--~~~L~I~~~ 981 (1884)
+.+.+..||.|.. +....+.+|+.+.|.|.+. +.|.|. |+|+++|..|.. ..++.+. ..++ .++|.|.++
T Consensus 7 ~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~--g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v 83 (122)
T 2cry_A 7 GTLTVNGPPIISS-TQTQHALHGEKGQIKCFIR--STPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI 83 (122)
T ss_dssp CCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEEC--CSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTC
T ss_pred EEEEEecCCCccC-CCeEEEecCCCEEEEEEEe--ecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCC
Confidence 3455668999988 8889999999999999998 778876 999999999975 4667663 2222 568999999
Q ss_pred CCCCC-eEEEEEEEcCCeeEEEEEEEEEEee
Q psy2148 982 YLRDS-GLYTCKATNKHGEATTSCKLTVKGR 1011 (1884)
Q Consensus 982 ~~~D~-G~Y~C~a~N~~G~~~~~~~l~V~~~ 1011 (1884)
+.+|+ |.|+|.|.|.+|..+..+.|.|.++
T Consensus 84 ~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~ 114 (122)
T 2cry_A 84 VRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 114 (122)
T ss_dssp CHHHHHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred ChhhCCceEEEEEECCCCeEEEEEEEEECCC
Confidence 99999 9999999999999999999998754
No 495
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.21 E-value=1e-12 Score=130.60 Aligned_cols=94 Identities=23% Similarity=0.294 Sum_probs=82.0
Q ss_pred CCCeEEeccCceEEcCCceEEEEEEEecCCCcE-EEEEeCCEecCC--CCCeEEe--ecCC--eEEEEEccCCCCCC-EE
Q psy2148 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLD-VYWLKNGKKIIP--DIRYKTL--EEDN--LFTLLIIEAVVEDS-GA 1812 (1884)
Q Consensus 1741 ~~P~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~k~~~~l~~--~~~~~~~--~~~~--~~~L~i~~~~~~d~-G~ 1812 (1884)
.||.|.. +....+.+|+.+.|.|.+.|.|.|. |.|+|++..+.. ..++.+. ..+. ...|.|.++..+|. |.
T Consensus 13 ~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~ 91 (122)
T 2cry_A 13 GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI 91 (122)
T ss_dssp SSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSC
T ss_pred cCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCce
Confidence 5888988 8888999999999999999999997 999999999875 4677663 2222 56899999999998 99
Q ss_pred EEEEEEeCCeeEEEEEEEEEEec
Q psy2148 1813 YECVAMNNAGEARCEAELVVQSK 1835 (1884)
Q Consensus 1813 Y~C~a~N~~G~~~~~~~l~V~~~ 1835 (1884)
|+|.|.|..|.....+.|.|.+.
T Consensus 92 Y~C~a~N~~G~~~~~~~l~V~~~ 114 (122)
T 2cry_A 92 YNCTAWNSFGSDTEIIRLKEQGS 114 (122)
T ss_dssp EEEEEECSSCEEEEEECCCCSCS
T ss_pred EEEEEECCCCeEEEEEEEEECCC
Confidence 99999999999999999999863
No 496
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.20 E-value=1.9e-10 Score=131.70 Aligned_cols=198 Identities=10% Similarity=0.008 Sum_probs=113.7
Q ss_pred cceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccc-----eEEEeeccceeeeeeeeeeeeceEEEEEee
Q psy2148 1271 IESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINIST-----AFLIFNFCLHAVIFSHPIFDLGFVSLDIDY 1345 (1884)
Q Consensus 1271 ~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 1345 (1884)
+..+.+.+|++++|.|.+.+.......+.|++............. ..........|..... ....+..+|+|.+
T Consensus 30 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~~sL~I~~ 108 (256)
T 3sob_H 30 SGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISA-DTSKNTAYLQMNS 108 (256)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEE-EGGGTEEEEEECS
T ss_pred cCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEE-eCCCCEEEEEECC
Confidence 445789999999999999753334578999975421111100000 0000000011211111 1234567899999
Q ss_pred ecccCceEEEEEEEcccc-----------ceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCC
Q psy2148 1346 VYPEDQGEYVCRAYNDHG-----------EAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTED 1414 (1884)
Q Consensus 1346 ~~~~d~G~Y~C~a~n~~g-----------~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1414 (1884)
++.+|+|.|.|.+.+..| .......|.|...+
T Consensus 109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~------------------------------------- 151 (256)
T 3sob_H 109 LRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAS------------------------------------- 151 (256)
T ss_dssp CCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSC-------------------------------------
T ss_pred CCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCC-------------------------------------
Confidence 999999999999987431 12222456554211
Q ss_pred ccCCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCC-CCeEEEeecCeecCCCCCc--eeeeeCc----eEEEEE
Q psy2148 1415 DLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDP-NMKVEWFLNGKPLPHKNRF--NPIYDFG----YVAMNF 1487 (1884)
Q Consensus 1415 ~~~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p-~~~i~W~~~~~~l~~~~~~--~~~~~~~----~~~L~i 1487 (1884)
..+|.+...... ..+.+|+.++|.|.+. ...| ++.+.| ++..+..+... .....++ ...|.|
T Consensus 152 -------~~~P~i~~~~~~-~~~~~g~~v~L~C~~~-~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i 220 (256)
T 3sob_H 152 -------TKGPSVFPLAPS-SKSTSGGTAALGCLVK-DYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTV 220 (256)
T ss_dssp -------CBCCEEEEECCC------TTEEEEEEEEE-EEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEE
T ss_pred -------CCCCEEEEECCC-cccccCCcEEEEEEEE-EEECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEE
Confidence 124554432222 2356899999999997 3356 467999 66555332100 0111222 246888
Q ss_pred eeeccCCCeEEEEEEEecCcceEEEEEEEEe
Q psy2148 1488 GWVYPEDSGEYLCRATNLYGMDETRAILKTT 1518 (1884)
Q Consensus 1488 ~~~~~~d~G~Y~c~a~n~~G~~~~~~~l~V~ 1518 (1884)
.....+| |.|+|.+.|..+.......|.+.
T Consensus 221 ~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~ 250 (256)
T 3sob_H 221 PSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 250 (256)
T ss_dssp EGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred CHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence 9888889 99999999998776666666553
No 497
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.20 E-value=6e-11 Score=116.83 Aligned_cols=97 Identities=21% Similarity=0.199 Sum_probs=77.2
Q ss_pred ccCCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeC----CeEEEEEccCCCCCCe
Q psy2148 912 DLGKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDF----GFVILEINDVYLRDSG 987 (1884)
Q Consensus 912 ~~~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~----~~~~L~I~~~~~~D~G 987 (1884)
.+..||.|.... +..+ .+...|.|.+. |.|.|.++|+|+|..+..+.++.+.... ....|.|.+++.+|+|
T Consensus 4 ~V~~pP~i~~~~-~~~~--~~~~~l~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 78 (118)
T 1wwc_A 4 TVYYPPRVVSLE-EPEL--RLEHCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG 78 (118)
T ss_dssp CCCCCCCCCCCC-CCCC--CCEEEEEEEEE--CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred EEecCCceeccC-CCee--ccceEEEEEee--eeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCE
Confidence 345678876552 2222 26678999999 7899999999999999888766554322 3458999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEEEEEeecc
Q psy2148 988 LYTCKATNKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 988 ~Y~C~a~N~~G~~~~~~~l~V~~~~~ 1013 (1884)
.|+|.|.|..|..+.++.|.|...|.
T Consensus 79 ~Y~C~a~N~~G~~~~~~~l~v~~~P~ 104 (118)
T 1wwc_A 79 NYTLIAKNPLGTANQTINGHFLKEPF 104 (118)
T ss_dssp EEEEEEEETTEEEEEEEEECCSCCCC
T ss_pred EEEEEEECCCCeEeeEEEEEEccCCC
Confidence 99999999999999999999887664
No 498
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.20 E-value=7.7e-11 Score=117.07 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=73.5
Q ss_pred ecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEcc-----CCCcEEEEee---CCeEEEEEccCCCCCCeEEEEE
Q psy2148 921 TTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALS-----AGSRIKTIND---FGFVILEINDVYLRDSGLYTCK 992 (1884)
Q Consensus 921 ~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~-----~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~ 992 (1884)
.++..+.+.+|+++.|.|.+.+.+.|.+.|.|+|+|..+. ...+...... ....+|.|.+++.+|+|.|+|.
T Consensus 13 ~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 92 (122)
T 3s35_X 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA 92 (122)
T ss_dssp ESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEE
T ss_pred cCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEE
Confidence 3445568999999999999996556778999999988543 1111111111 1344799999999999999999
Q ss_pred EEcCCeeEEEEEEEEEEeeccccccc
Q psy2148 993 ATNKHGEATTSCKLTVKGRQGIDVEP 1018 (1884)
Q Consensus 993 a~N~~G~~~~~~~l~V~~~~~~~~~p 1018 (1884)
|.|..|..+..+.|.|.++|.+.+.|
T Consensus 93 a~n~~g~~~~~~~l~V~~~p~i~~~p 118 (122)
T 3s35_X 93 ASSGLMTKKNSTFVRVHEKPFVAFGS 118 (122)
T ss_dssp EECSSCEEEEEEEEEEEEEECC----
T ss_pred EccCCCceEEEEEEEEeccCeEEeec
Confidence 99999999999999999988776544
No 499
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.20 E-value=1.6e-10 Score=129.38 Aligned_cols=195 Identities=10% Similarity=-0.007 Sum_probs=111.9
Q ss_pred cceeeeecCCcEEEEEEEeecCCCcceEEEecccccccccccccce----EEEee-ccceeeeeeeeeeeeceEEEEEee
Q psy2148 1271 IESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINISTA----FLIFN-FCLHAVIFSHPIFDLGFVSLDIDY 1345 (1884)
Q Consensus 1271 ~~~~~v~~g~~v~l~c~v~~~~~p~~~~~W~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~ 1345 (1884)
+..+.+.+|+.++|.|.+.+...+...+.|++....-.+....... ..... ....|.... .....+..+|+|.+
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~~~~~~sL~I~~ 85 (226)
T 3mlr_H 7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMS-VDKSISTAYLQWTT 85 (226)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEE-EEGGGTEEEEEESS
T ss_pred CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEE-ecCCCCEEEEEECC
Confidence 4467899999999999997533345789999854211111000000 00000 001121111 11223567899999
Q ss_pred ecccCceEEEEEEEcccc---------ceeeeEEEEEeecCceeecccCCcchhhhHHHHHHHHhhhcccccccccCCcc
Q psy2148 1346 VYPEDQGEYVCRAYNDHG---------EAFTKATISCKKIPTIQLQNQVPKGMLKTEALIQMEAAIKKYTSEIYLTEDDL 1416 (1884)
Q Consensus 1346 ~~~~d~G~Y~C~a~n~~g---------~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1416 (1884)
++.+|+|.|.|.+.+..+ .......|.|...+
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~--------------------------------------- 126 (226)
T 3mlr_H 86 LQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT--------------------------------------- 126 (226)
T ss_dssp CCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC---------------------------------------
T ss_pred CCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC---------------------------------------
Confidence 999999999999986531 01122345553221
Q ss_pred CCcccCCCCeEEEccCCccccccccceEEEEEEeeCCCC-CCeEEEeecCeecCCCCCc--eeeeeCc----eEEEEEee
Q psy2148 1417 YEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDP-NMKVEWFLNGKPLPHKNRF--NPIYDFG----YVAMNFGW 1489 (1884)
Q Consensus 1417 ~~~~~~~pP~~~~~~~~~~~v~~g~~~~l~C~~~~~g~p-~~~i~W~~~~~~l~~~~~~--~~~~~~~----~~~L~i~~ 1489 (1884)
..+|.+....... .+.+|+.++|.|.+. ...| .+.+.| ++..+..+... .....++ ...|.|..
T Consensus 127 -----~~~P~i~~~~~~~-~~~~g~~~~l~C~~~-~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~ 197 (226)
T 3mlr_H 127 -----TKGPSVFPLAPSS-KSTSGGTAALGCLVK-DYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPS 197 (226)
T ss_dssp -----CBCCEEEEEEEEE-CSTTSSEEEEEEEEE-EEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEG
T ss_pred -----CCCCcEEEecCcc-cccCCCCEEEEEEEE-EEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECH
Confidence 1245554322221 246899999999997 3356 478999 55444321100 0111222 24688888
Q ss_pred eccCCCeEEEEEEEecCcceEEEEEE
Q psy2148 1490 VYPEDSGEYLCRATNLYGMDETRAIL 1515 (1884)
Q Consensus 1490 ~~~~d~G~Y~c~a~n~~G~~~~~~~l 1515 (1884)
...+| |.|+|.|.|..+.......|
T Consensus 198 ~~~~~-~~ytC~v~h~~~~~~~~~~~ 222 (226)
T 3mlr_H 198 SSLGT-QTYICNVNHKPSNTKVDKKV 222 (226)
T ss_dssp GGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred hHcCC-CeEEEEEEECCCCcCeEEEc
Confidence 88889 99999999998765444433
No 500
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.20 E-value=3.8e-11 Score=116.20 Aligned_cols=92 Identities=26% Similarity=0.403 Sum_probs=81.1
Q ss_pred CCCCeeeecCCceeecCCCeEEEEEEEeeCCCCCcEEEEeeCCEEccCCCcEEEEeeCCeEEEEEccCCCCCCeEEEEEE
Q psy2148 914 GKAPEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993 (1884)
Q Consensus 914 ~~~p~~~~~~~~~~v~~G~~v~l~C~v~~~~~P~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 993 (1884)
..||.|...+.++.+.+|++++|.|.+. +. |.|+|+|+|..+..+.++.+..++..+.|.|.+++.+|+|.|+|.|
T Consensus 6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~--~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 81 (108)
T 2dm7_A 6 SGPARFTQDLKTKEASEGATATLQCELS--KV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC 81 (108)
T ss_dssp CCCCCBCSCCBCCEEETTSCEEEEEEBS--SS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEE
T ss_pred CCCCeeeecCCcEEEeCCCcEEEEEEeC--CC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence 3689999989999999999999999997 43 5799999999999989999888888889999999999999999999
Q ss_pred EcCCeeEEEEEEEEEEeecc
Q psy2148 994 TNKHGEATTSCKLTVKGRQG 1013 (1884)
Q Consensus 994 ~N~~G~~~~~~~l~V~~~~~ 1013 (1884)
.| .+..+.|.|..+|.
T Consensus 82 ~n----~~~~~~l~V~~~p~ 97 (108)
T 2dm7_A 82 GQ----ERTSATLTVRALPA 97 (108)
T ss_dssp TT----EEEEEECEEECCCS
T ss_pred cC----CEEEEEEEEecCCH
Confidence 44 67788999987554
Done!