RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2148
(1884 letters)
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 92.3 bits (230), Expect = 3e-22
Identities = 31/90 (34%), Positives = 42/90 (46%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLI 1802
P F + G+ ARF ++ V W K+G+ + R+K E +TL I
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 1803 IEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
+D G Y CVA N+AGEA AEL V
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 89.2 bits (222), Expect = 3e-21
Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 917 PEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVIL 976
P+F P D+ + E A F C +T DP TV WF +G+ L + R K + G L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTL 58
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
I++V D G YTC ATN GEA S +LTV
Sbjct: 59 TISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 86.5 bits (215), Expect = 4e-20
Identities = 31/90 (34%), Positives = 46/90 (51%)
Query: 1640 PVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIM 1699
P FT+K + E + ARF GDP PT+ WF++ P+ SS F++ L +
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 1700 RQVFMEDSGVFAVIAENRGGKAKCSANLVV 1729
V +D G + +A N G+A+ SA L V
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 77.3 bits (191), Expect = 6e-17
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 707 PVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVI 766
P FT +++ ++EGE+A F +T DP V WF +G+P+++ RF+ + G
Sbjct: 1 PKFTQKPKDVE-VQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT 57
Query: 767 LEISPVYPEDCGQYSCRAYNDYGEAVTSASMKV 799
L IS V P+D G+Y+C A N GEA SA + V
Sbjct: 58 LTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 69.6 bits (171), Expect = 3e-14
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 6 DPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTC 65
DP+ + WFK+G PL R + T++ G TL+I++++ DD YTC ATN GEA ++
Sbjct: 27 DPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASA 86
Query: 66 TLKI 69
L +
Sbjct: 87 ELTV 90
Score = 67.3 bits (165), Expect = 2e-13
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 1425 PRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVA 1484
P+F + K ++ E +S +F C + GDP+ V WF +G+PL +RF Y+ G
Sbjct: 1 PKFTQKPKDV-EVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT 57
Query: 1485 MNFGWVYPEDSGEYLCRATNLYGMDETRAILK 1516
+ V P+D G+Y C ATN G E A L
Sbjct: 58 LTISNVQPDDEGKYTCVATNSAGEAEASAELT 89
Score = 67.3 bits (165), Expect = 2e-13
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 1054 PVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFIS 1113
P FT + +D ++V E F C + DP + WF +G+P + R K Y+ G +
Sbjct: 1 PKFTQKPKD-VEVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT 57
Query: 1114 LDMDYVYARDSGEYICRATNKWGTAMTKAKVI 1145
L + V D G+Y C ATN G A A++
Sbjct: 58 LTISNVQPDDEGKYTCVATNSAGEAEASAELT 89
Score = 65.4 bits (160), Expect = 1e-12
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 315 QHLSNL--SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 372
Q ++ EGE A F ++ GD TV + +G+P+ +S R + + G L I
Sbjct: 5 QKPKDVEVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISN 62
Query: 373 TKIEDTGVYTCRATNKWGQAEISVNLE 399
+ +D G YTC ATN G+AE S L
Sbjct: 63 VQPDDEGKYTCVATNSAGEAEASAELT 89
Score = 61.5 bits (150), Expect = 2e-11
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 409 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 468
PKFT K +E +++G+SA F CT+T DP+ V WF +G+P+ +R K+ + G
Sbjct: 1 PKFTQKPKDVE-VQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT 57
Query: 469 MDIAYVQSHDSGEYVCRAWN 488
+ I+ VQ D G+Y C A N
Sbjct: 58 LTISNVQPDDEGKYTCVATN 77
Score = 60.3 bits (147), Expect = 5e-11
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 513 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYAR 572
+++V E F C + DP + WF +G+P + R K Y+ G +L + V
Sbjct: 9 DVEVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPD 66
Query: 573 DSGEYICRATNKWGTAMTKAKVI 595
D G+Y C ATN G A A++
Sbjct: 67 DEGKYTCVATNSAGEAEASAELT 89
Score = 57.7 bits (140), Expect = 5e-10
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 240 EWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLK 296
WF + +PL + +FK T++ G L I +D G YT ATNS G A S L
Sbjct: 33 SWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELT 89
Score = 57.3 bits (139), Expect = 7e-10
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
Query: 109 PVFISHLNDVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNGKPI 168
P F DVE +E E+ F C V G DP+ V WF +G+P+
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTV---------TG----------DPDPTVSWFKDGQPL 41
Query: 169 FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCQ 201
+R K+ + G + I+ VQ D G+Y C
Sbjct: 42 RSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCV 74
Score = 55.3 bits (134), Expect = 3e-09
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
V WF +G+ L R++ ++ G L I ++ G Y C ATN G A L
Sbjct: 32 VSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELT 89
Score = 46.1 bits (110), Expect = 6e-06
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 1563 PVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTI 1603
P F +P+ +VQEGE ARF VTG P P V W +G +
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPL 41
Score = 44.9 bits (107), Expect = 2e-05
Identities = 28/121 (23%), Positives = 36/121 (29%), Gaps = 49/121 (40%)
Query: 1265 PRFITEIESVTVQEAEPVRFETRV----EPRV-----------DPRLRVECSLSTAFFFP 1309
P+F + + V VQE E RF V +P V R +V T
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLT- 59
Query: 1310 FINISTAFLIFNFCLHAVIFSHPIFDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKA 1369
I V P+D+G+Y C A N GEA A
Sbjct: 60 ---------------------------------ISNVQPDDEGKYTCVATNSAGEAEASA 86
Query: 1370 T 1370
Sbjct: 87 E 87
Score = 41.9 bits (99), Expect = 2e-04
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 823 EISPVYPEDCGQYSCRAYNDYGEAVTSASMKV 854
IS V P+D G+Y+C A N GEA SA + V
Sbjct: 59 TISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
Score = 36.8 bits (86), Expect = 0.010
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1855 PTVAEPLKDQNVKEGSAVTLKCRITGKP 1882
P + KD V+EG + C +TG P
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDP 28
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot be
classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 62.1 bits (151), Expect = 1e-11
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 1750 SSAVINVGQLARFDAKISATKPLDVYWLKNG-KKIIPDIRYKTLEEDNLFTLLIIEAVVE 1808
S + G+ + S + P +V W K G K + R+ + TL I E
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 1809 DSGAYECVAMNNAGEARCEAELVV 1832
DSG Y C A N++G A L V
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLTV 85
Score = 61.8 bits (150), Expect = 2e-11
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG-KALSAGSRIKTINDFGFVILEINDV 981
P +T+ E C + P V W+ G K L+ R L I++V
Sbjct: 1 PPSVTVKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNV 58
Query: 982 YLRDSGLYTCKATNKHGEATTSCKLTV 1008
DSG YTC ATN G A++ LTV
Sbjct: 59 TPEDSGTYTCAATNSSGSASSGTTLTV 85
Score = 59.4 bits (144), Expect = 1e-10
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 6 DPNLKIEWFKNG-VPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVST 64
P ++ W+K G L+ R + TL+I+++ +DS YTC ATN G A S
Sbjct: 21 SPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSG 80
Query: 65 CTLKI 69
TL +
Sbjct: 81 TTLTV 85
Score = 57.5 bits (139), Expect = 5e-10
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDF-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI 1713
+ E G P P + W+++ + S F + + S L + V EDSG +
Sbjct: 10 ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69
Query: 1714 AENRGGKAKCSANLVV 1729
A N G A L V
Sbjct: 70 ATNSSGSASSGTTLTV 85
Score = 54.0 bits (130), Expect = 9e-09
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 720 REGENAHFEARLTPTDDPKLKVEWFWNG-KPMKTGSRFRTFCDFGFVILEISPVYPEDCG 778
+EGE+ + P +V W+ G K + RF L IS V PED G
Sbjct: 7 KEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSG 64
Query: 779 QYSCRAYNDYGEAVTSASMKV 799
Y+C A N G A + ++ V
Sbjct: 65 TYTCAATNSSGSASSGTTLTV 85
Score = 52.9 bits (127), Expect = 2e-08
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNG-KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 482
G+S C + P +V W+ G K + R + + I+ V DSG Y
Sbjct: 9 GESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66
Query: 483 VCRAWNN 489
C A N+
Sbjct: 67 TCAATNS 73
Score = 46.7 bits (111), Expect = 3e-06
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 336 GDQTMTVEFLYNG-KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 394
G V + G K + S R + L I ED+G YTC ATN G A
Sbjct: 20 GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASS 79
Query: 395 SVNLE 399
L
Sbjct: 80 GTTLT 84
Score = 44.8 bits (106), Expect = 1e-05
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 513 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG-RPFATGSRVKTVYDFGFISLDMDYVYA 571
++ V E V C P + W+ G + A R +L + V
Sbjct: 3 SVTVKEGESVTLSCEA--SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 572 RDSGEYICRATNKWGTAMTKAKVI 595
DSG Y C ATN G+A + +
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLT 84
Score = 44.8 bits (106), Expect = 1e-05
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 1063 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG-RPFATGSRVKTVYDFGFISLDMDYVYA 1121
++ V E V C P + W+ G + A R +L + V
Sbjct: 3 SVTVKEGESVTLSCEA--SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 1122 RDSGEYICRATNKWGTAMTKAKVI 1145
DSG Y C ATN G+A + +
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLT 84
Score = 44.4 bits (105), Expect = 2e-05
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNG-KPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYL 1499
+S C+ + G P +V W+ G K L RF+ + V PEDSG Y
Sbjct: 10 ESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYT 67
Query: 1500 CRATNLYGMDETRAILK 1516
C ATN G + L
Sbjct: 68 CAATNSSGSASSGTTLT 84
Score = 43.6 bits (103), Expect = 4e-05
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 20/86 (23%)
Query: 117 DVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNG-KPIFHKNRVK 175
V KE E+V C P +V W+ G K + R
Sbjct: 3 SVTVKEGESVTLSCEAS-------------------GSPPPEVTWYKQGGKLLAESGRFS 43
Query: 176 MVSDFGFVVMDIAYVQSHDSGEYVCQ 201
+ + I+ V DSG Y C
Sbjct: 44 VSRSGSTSTLTISNVTPEDSGTYTCA 69
Score = 40.6 bits (95), Expect = 4e-04
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 592 AKVICKV---LTVIVEWFYNG-KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
+ C+ V W+ G K L R+ L I E+SG Y C AT
Sbjct: 12 VTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAAT 71
Query: 648 NKYGSDVTKASLK 660
N GS + +L
Sbjct: 72 NSSGSASSGTTLT 84
Score = 39.0 bits (91), Expect = 0.001
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 237 PFTEWFVNN-KPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
P W+ K L +F + L I EDSG YT ATNS GSA++ TL
Sbjct: 24 PEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTL 83
Query: 296 K 296
Sbjct: 84 T 84
Score = 36.7 bits (85), Expect = 0.010
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 1339 VSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATIS 1372
+L I V PED G Y C A N G A + T++
Sbjct: 51 STLTISNVTPEDSGTYTCAATNSSGSASSGTTLT 84
Score = 34.4 bits (79), Expect = 0.071
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 824 ISPVYPEDCGQYSCRAYNDYGEAVTSASMKV 854
IS V PED G Y+C A N G A + ++ V
Sbjct: 55 ISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85
Score = 31.7 bits (72), Expect = 0.66
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 1569 PEAQKVQEGEPARF-CTRVTGYPRPRVMWLINGHTIVNEIVR 1609
P + V+EGE C +G P P V W G ++ E R
Sbjct: 1 PPSVTVKEGESVTLSC-EASGSPPPEVTWYKQGGKLLAESGR 41
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 62.1 bits (151), Expect = 1e-11
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 1750 SSAVINVGQLARFDAKISATKPLDVYWLKNG-KKIIPDIRYKTLEEDNLFTLLIIEAVVE 1808
S + G+ + S + P +V W K G K + R+ + TL I E
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 1809 DSGAYECVAMNNAGEARCEAELVV 1832
DSG Y C A N++G A L V
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLTV 85
Score = 61.8 bits (150), Expect = 2e-11
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNG-KALSAGSRIKTINDFGFVILEINDV 981
P +T+ E C + P V W+ G K L+ R L I++V
Sbjct: 1 PPSVTVKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNV 58
Query: 982 YLRDSGLYTCKATNKHGEATTSCKLTV 1008
DSG YTC ATN G A++ LTV
Sbjct: 59 TPEDSGTYTCAATNSSGSASSGTTLTV 85
Score = 59.4 bits (144), Expect = 1e-10
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 6 DPNLKIEWFKNG-VPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVST 64
P ++ W+K G L+ R + TL+I+++ +DS YTC ATN G A S
Sbjct: 21 SPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSG 80
Query: 65 CTLKI 69
TL +
Sbjct: 81 TTLTV 85
Score = 57.5 bits (139), Expect = 5e-10
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDF-PITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI 1713
+ E G P P + W+++ + S F + + S L + V EDSG +
Sbjct: 10 ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69
Query: 1714 AENRGGKAKCSANLVV 1729
A N G A L V
Sbjct: 70 ATNSSGSASSGTTLTV 85
Score = 54.0 bits (130), Expect = 9e-09
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 720 REGENAHFEARLTPTDDPKLKVEWFWNG-KPMKTGSRFRTFCDFGFVILEISPVYPEDCG 778
+EGE+ + P +V W+ G K + RF L IS V PED G
Sbjct: 7 KEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSG 64
Query: 779 QYSCRAYNDYGEAVTSASMKV 799
Y+C A N G A + ++ V
Sbjct: 65 TYTCAATNSSGSASSGTTLTV 85
Score = 52.9 bits (127), Expect = 2e-08
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNG-KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 482
G+S C + P +V W+ G K + R + + I+ V DSG Y
Sbjct: 9 GESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66
Query: 483 VCRAWNN 489
C A N+
Sbjct: 67 TCAATNS 73
Score = 46.7 bits (111), Expect = 3e-06
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 336 GDQTMTVEFLYNG-KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 394
G V + G K + S R + L I ED+G YTC ATN G A
Sbjct: 20 GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASS 79
Query: 395 SVNLE 399
L
Sbjct: 80 GTTLT 84
Score = 44.8 bits (106), Expect = 1e-05
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 513 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG-RPFATGSRVKTVYDFGFISLDMDYVYA 571
++ V E V C P + W+ G + A R +L + V
Sbjct: 3 SVTVKEGESVTLSCEA--SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 572 RDSGEYICRATNKWGTAMTKAKVI 595
DSG Y C ATN G+A + +
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLT 84
Score = 44.8 bits (106), Expect = 1e-05
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 1063 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNG-RPFATGSRVKTVYDFGFISLDMDYVYA 1121
++ V E V C P + W+ G + A R +L + V
Sbjct: 3 SVTVKEGESVTLSCEA--SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 1122 RDSGEYICRATNKWGTAMTKAKVI 1145
DSG Y C ATN G+A + +
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLT 84
Score = 44.4 bits (105), Expect = 2e-05
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNG-KPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYL 1499
+S C+ + G P +V W+ G K L RF+ + V PEDSG Y
Sbjct: 10 ESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYT 67
Query: 1500 CRATNLYGMDETRAILK 1516
C ATN G + L
Sbjct: 68 CAATNSSGSASSGTTLT 84
Score = 43.6 bits (103), Expect = 4e-05
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 20/86 (23%)
Query: 117 DVECKENENVHFDCRVEPSKDATMKIGKLLCTLTPVNDPELKVEWFHNG-KPIFHKNRVK 175
V KE E+V C P +V W+ G K + R
Sbjct: 3 SVTVKEGESVTLSCEAS-------------------GSPPPEVTWYKQGGKLLAESGRFS 43
Query: 176 MVSDFGFVVMDIAYVQSHDSGEYVCQ 201
+ + I+ V DSG Y C
Sbjct: 44 VSRSGSTSTLTISNVTPEDSGTYTCA 69
Score = 40.6 bits (95), Expect = 4e-04
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 592 AKVICKV---LTVIVEWFYNG-KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
+ C+ V W+ G K L R+ L I E+SG Y C AT
Sbjct: 12 VTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAAT 71
Query: 648 NKYGSDVTKASLK 660
N GS + +L
Sbjct: 72 NSSGSASSGTTLT 84
Score = 39.0 bits (91), Expect = 0.001
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 237 PFTEWFVNN-KPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
P W+ K L +F + L I EDSG YT ATNS GSA++ TL
Sbjct: 24 PEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTL 83
Query: 296 K 296
Sbjct: 84 T 84
Score = 36.7 bits (85), Expect = 0.010
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 1339 VSLDIDYVYPEDQGEYVCRAYNDHGEAFTKATIS 1372
+L I V PED G Y C A N G A + T++
Sbjct: 51 STLTISNVTPEDSGTYTCAATNSSGSASSGTTLT 84
Score = 34.4 bits (79), Expect = 0.071
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 824 ISPVYPEDCGQYSCRAYNDYGEAVTSASMKV 854
IS V PED G Y+C A N G A + ++ V
Sbjct: 55 ISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85
Score = 31.7 bits (72), Expect = 0.66
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 1569 PEAQKVQEGEPARF-CTRVTGYPRPRVMWLINGHTIVNEIVR 1609
P + V+EGE C +G P P V W G ++ E R
Sbjct: 1 PPSVTVKEGESVTLSC-EASGSPPPEVTWYKQGGKLLAESGR 41
>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and
similar proteins. Ig_Titin_like: immunoglobulin
(Ig)-like domain found in titin-like proteins. Titin
(also called connectin) is a fibrous sarcomeric protein
specifically found in vertebrate striated muscle. Titin
is gigantic, depending on isoform composition it ranges
from 2970 to 3700 kDa, and is of a length that spans half
a sarcomere. Titin largely consists of multiple repeats
of Ig-like and fibronectin type 3 (FN-III)-like domains.
Titin connects the ends of myosin thick filaments to Z
disks and extends along the thick filament to the H zone.
It appears to function similarly to an elastic band,
keeping the myosin filaments centered in the sarcomere
during muscle contraction or stretching. Within the
sarcomere, titin is also attached to or is associated
with myosin binding protein C (MyBP-C). MyBP-C appears to
contribute to the generation of passive tension by titin,
and similar to titin has repeated Ig-like and FN-III
domains. Also included in this group are worm twitchin
and insect projectin, thick filament proteins of
invertebrate muscle, which also have repeated Ig-like and
FN-III domains.
Length = 74
Score = 59.1 bits (144), Expect = 8e-11
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 1658 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENR 1717
R EV G P PT+ W ++ P+ S QI T ++ + L+++ DSG + + +N
Sbjct: 3 RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNP 62
Query: 1718 GGKAKCSANLVV 1729
G+ + N+ V
Sbjct: 63 AGEKSATINVKV 74
Score = 39.5 bits (93), Expect = 8e-04
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 949 TVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
TV W +GK L R++ L I + DSG YT N GE + + + V
Sbjct: 15 TVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74
Score = 37.6 bits (88), Expect = 0.004
Identities = 20/64 (31%), Positives = 27/64 (42%)
Query: 1761 RFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820
R + IS V W K+GK + R + + +L+I A DSG Y N
Sbjct: 3 RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNP 62
Query: 1821 AGEA 1824
AGE
Sbjct: 63 AGEK 66
Score = 35.6 bits (83), Expect = 0.020
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 10 KIEWFKNGVPLSLGSR--IRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCTL 67
+ W K+G PL L R I +T +L I + DS YT N GE +T +
Sbjct: 15 TVTWSKDGKPLKLSGRVQIETTASS--TSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72
Query: 68 KI 69
K+
Sbjct: 73 KV 74
Score = 29.9 bits (68), Expect = 2.2
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 232 LKTLVPFT-------EWFVNNKPLPAGAKFK-TTHDFGYVALDIVGAYAEDSGIYTVKAT 283
++ VP + W + KPL + + T +L I A DSG YT+
Sbjct: 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTAS-STSLVIKNAERSDSGKYTLTLK 60
Query: 284 NSKGSAT 290
N G +
Sbjct: 61 NPAGEKS 67
>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of
human titin C terminus and similar proteins.
Ig5_Titin_like: domain similar to the M5, fifth
immunoglobulin (Ig)-like domain from the human titin C
terminus. Titin (also called connectin) is a fibrous
sarcomeric protein specifically found in vertebrate
striated muscle. Titin is gigantic; depending on isoform
composition it ranges from 2970 to 3700 kDa, and is of a
length that spans half a sarcomere. Titin largely
consists of multiple repeats of Ig-like and fibronectin
type 3 (FN-III)-like domains. Titin connects the ends of
myosin thick filaments to Z disks and extends along the
thick filament to the H zone, and appears to function
similar to an elastic band, keeping the myosin filaments
centered in the sarcomere during muscle contraction or
stretching.
Length = 92
Score = 58.9 bits (142), Expect = 2e-10
Identities = 30/82 (36%), Positives = 40/82 (48%)
Query: 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 1698
P K + E + ARF + DG+P PT+ W RE I SS QI + KS
Sbjct: 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFE 62
Query: 1699 MRQVFMEDSGVFAVIAENRGGK 1720
+ +V M D G + V+ EN GK
Sbjct: 63 ISKVQMSDEGNYTVVVENSEGK 84
Score = 40.8 bits (95), Expect = 5e-04
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 1566 VSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIVNEIVRKITATE 1615
+++P + V EGE ARF V G P P V W+ G IV+ +IT+TE
Sbjct: 7 LTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTE 56
Score = 39.3 bits (91), Expect = 0.001
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 920 LTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEIN 979
LT P LT++E A F C + +P+ TV W G+ + + R + + EI+
Sbjct: 7 LTKPRSLTVSEGESARFSCDV--DGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEIS 64
Query: 980 DVYLRDSGLYTCKATNKHGEATTSCKLT 1007
V + D G YT N G+ LT
Sbjct: 65 KVQMSDEGNYTVVVENSEGKQEAQFTLT 92
Score = 33.1 bits (75), Expect = 0.24
Identities = 22/90 (24%), Positives = 40/90 (44%)
Query: 1741 VPPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTL 1800
+P + LT S ++ G+ ARF + V W++ G+ I+ R++ + T
Sbjct: 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTF 61
Query: 1801 LIIEAVVEDSGAYECVAMNNAGEARCEAEL 1830
I + + D G Y V N+ G+ + L
Sbjct: 62 EISKVQMSDEGNYTVVVENSEGKQEAQFTL 91
>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type.
Length = 63
Score = 55.9 bits (135), Expect = 1e-09
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995
C +P + W +GK L +R L I V L DSGLYTC A N
Sbjct: 7 LTCPAE--GNPVPNITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYTCVAEN 60
Query: 996 KHG 998
G
Sbjct: 61 SAG 63
Score = 46.2 bits (110), Expect = 2e-06
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLG 59
+P I W K+G PL +R ++ TL+I S+ +DS +YTC A N G
Sbjct: 12 EGNPVPNITWLKDGKPLPESNRFVASGS----TLTIKSVSLEDSGLYTCVAENSAG 63
Score = 46.2 bits (110), Expect = 3e-06
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLC 1500
QS C PN + W +GKPLP NRF + V EDSG Y C
Sbjct: 3 QSVTLTCPAEGNPVPN--ITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYTC 56
Query: 1501 RATNLYG 1507
A N G
Sbjct: 57 VAENSAG 63
Score = 44.7 bits (106), Expect = 9e-06
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 1773 DVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAG 1822
++ WLK+GK + R TL I +EDSG Y CVA N+AG
Sbjct: 18 NITWLKDGKPLPESNR---FVASGS-TLTIKSVSLEDSGLYTCVAENSAG 63
Score = 43.2 bits (102), Expect = 3e-05
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 341 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 390
+ +L +GKP+ S+R + L I +ED+G+YTC A N G
Sbjct: 18 NITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYTCVAENSAG 63
Score = 41.2 bits (97), Expect = 1e-04
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 1664 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 1719
+G+P+P I W ++ P+ S ++ S L ++ V +EDSG++ +AEN G
Sbjct: 12 EGNPVPNITWLKDGKPLPES----NRFVASGSTLTIKSVSLEDSGLYTCVAENSAG 63
Score = 40.1 bits (94), Expect = 4e-04
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 522 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRA 581
V C E P I W +G+P +R +L + V DSG Y C A
Sbjct: 5 VTLTCPAEGNPVPN--ITWLKDGKPLPESNRF----VASGSTLTIKSVSLEDSGLYTCVA 58
Query: 582 TNKWG 586
N G
Sbjct: 59 ENSAG 63
Score = 40.1 bits (94), Expect = 4e-04
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 1072 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRA 1131
V C E P I W +G+P +R +L + V DSG Y C A
Sbjct: 5 VTLTCPAEGNPVPN--ITWLKDGKPLPESNRF----VASGSTLTIKSVSLEDSGLYTCVA 58
Query: 1132 TNKWG 1136
N G
Sbjct: 59 ENSAG 63
Score = 40.1 bits (94), Expect = 4e-04
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 483
G S C P + W +GKP+ NR + I V DSG Y
Sbjct: 2 GQSVTLTCPAEGNPVPN--ITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYT 55
Query: 484 CRAWNN 489
C A N+
Sbjct: 56 CVAENS 61
Score = 37.0 bits (86), Expect = 0.005
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
+ W +GK LP +R+ + I + E+SG+Y C A N G
Sbjct: 19 ITWLKDGKPLPESNRF-VASGSTLTIKSVS---LEDSGLYTCVAENSAG 63
Score = 36.2 bits (84), Expect = 0.008
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 721 EGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQY 780
EG++ P + W +GKP+ +RF L I V ED G Y
Sbjct: 1 EGQSVTLTCPAEGNPVPN--ITWLKDGKPLPESNRFV----ASGSTLTIKSVSLEDSGLY 54
Query: 781 SCRAYNDYG 789
+C A N G
Sbjct: 55 TCVAENSAG 63
Score = 34.7 bits (80), Expect = 0.026
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 241 WFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKG 287
W + KPLP +F + L I EDSG+YT A NS G
Sbjct: 21 WLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYTCVAENSAG 63
Score = 34.7 bits (80), Expect = 0.027
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 144 KLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCQ 201
L C P + W +GKP+ NR + I V DSG Y C
Sbjct: 6 TLTCPAEGNPVPN--ITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYTCV 57
Score = 30.1 bits (68), Expect = 1.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 1340 SLDIDYVYPEDQGEYVCRAYNDHG 1363
+L I V ED G Y C A N G
Sbjct: 40 TLTIKSVSLEDSGLYTCVAENSAG 63
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig) domain
found in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
this group are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as, T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as,
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 54.8 bits (131), Expect = 3e-09
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 934 AHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFV----ILEINDVYLRDSGLY 989
C + P T+ W NGK L + + + G L I++V L DSG Y
Sbjct: 1 VTLTCLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58
Query: 990 TCKATNKHGEATTS 1003
TC A+N G + S
Sbjct: 59 TCVASNSAGTVSAS 72
Score = 52.5 bits (125), Expect = 2e-08
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 6 DPNLKIEWFKNGVPLSLGSRIRSTFDFGLV----TLSINSLRADDSAIYTCKATNLLGEA 61
P I W KNG PL R G TL+I+++ +DS YTC A+N G
Sbjct: 10 PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTV 69
Query: 62 VSTCT 66
++ T
Sbjct: 70 SASVT 74
Score = 52.5 bits (125), Expect = 2e-08
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 1657 ARFEVEFDGDPLPTIKWFREDFPITSSPD----FQIHTFSTKSILIMRQVFMEDSGVFAV 1712
G P PTI W + P+ SS T S S L + V +EDSG +
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 1713 IAENRGGKAKCSAN 1726
+A N G S
Sbjct: 61 VASNSAGTVSASVT 74
Score = 50.6 bits (120), Expect = 1e-07
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 1765 KISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLF----TLLIIEAVVEDSGAYECVAMNN 1820
S P + WLKNGK + + + TL I +EDSG Y CVA N+
Sbjct: 6 LASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS 65
Query: 1821 AGEARCEAE 1829
AG
Sbjct: 66 AGTVSASVT 74
Score = 48.3 bits (114), Expect = 7e-07
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 734 TDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFV----ILEISPVYPEDCGQYSCRAYNDYG 789
+ P + W NGKP+ + R G L IS V ED G Y+C A N G
Sbjct: 8 SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67
Query: 790 EAVTSAS 796
S +
Sbjct: 68 TVSASVT 74
Score = 44.8 bits (105), Expect = 1e-05
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 336 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMV----VLEILGTKIEDTGVYTCRATNKWGQ 391
G T+ +L NGKP+ +S R + G L I +ED+G YTC A+N G
Sbjct: 9 GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68
Query: 392 AEISVN 397
SV
Sbjct: 69 VSASVT 74
Score = 44.0 bits (103), Expect = 2e-05
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 1444 KFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGW----VYPEDSGEYL 1499
C + G P + W NGKPLP G + + V EDSG Y
Sbjct: 2 TLTCLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59
Query: 1500 CRATNLYGMDETRA 1513
C A+N G
Sbjct: 60 CVASNSAGTVSASV 73
Score = 43.6 bits (102), Expect = 3e-05
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 427 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD----IAYVQSHDSGEY 482
C + P + W NGKP+ ++ S G I+ V DSG Y
Sbjct: 1 VTLTCLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58
Query: 483 VCRAWNN 489
C A N+
Sbjct: 59 TCVASNS 65
Score = 41.7 bits (97), Expect = 2e-04
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 522 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFI----SLDMDYVYARDSGEY 577
V C PT+ W NG+P + + G +L + V DSG Y
Sbjct: 1 VTLTCLASGPPPPTIT--WLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58
Query: 578 ICRATNKWGTAMTKAK 593
C A+N GT
Sbjct: 59 TCVASNSAGTVSASVT 74
Score = 41.7 bits (97), Expect = 2e-04
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 1072 VHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFI----SLDMDYVYARDSGEY 1127
V C PT+ W NG+P + + G +L + V DSG Y
Sbjct: 1 VTLTCLASGPPPPTIT--WLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58
Query: 1128 ICRATNKWGTAMTKAK 1143
C A+N GT
Sbjct: 59 TCVASNSAGTVSASVT 74
Score = 40.6 bits (94), Expect = 4e-04
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 144 KLLCTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD----IAYVQSHDSGEYV 199
L C + P + W NGKP+ ++ S G I+ V DSG Y
Sbjct: 2 TLTCLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59
Query: 200 CQWFVNNKPLPAGAKFK 216
C +N A
Sbjct: 60 CV--ASNSAGTVSASVT 74
Score = 39.8 bits (92), Expect = 7e-04
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 592 AKVICKVL---TVIVEWFYNGKKLPHGHRYRTFHDFGIV----ILDILYCYEENSGVYEC 644
+ C + W NGK LP R G L I E+SG Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 645 RATNKYGSDVTKAS 658
A+N G+ +
Sbjct: 61 VASNSAGTVSASVT 74
Score = 34.8 bits (79), Expect = 0.034
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 237 PFTEWFVNNKPLPAG----AKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTS 292
P W N KPLP+ + G L I EDSG YT A+NS G+ + S
Sbjct: 13 PTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSAS 72
Score = 33.2 bits (75), Expect = 0.15
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 1334 FDLGFVSLDIDYVYPEDQGEYVCRAYNDHGEAFTKAT 1370
G +L I V ED G Y C A N G T
Sbjct: 38 TSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSASVT 74
Score = 32.5 bits (73), Expect = 0.23
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 824 ISPVYPEDCGQYSCRAYNDYGEAVTSAS 851
IS V ED G Y+C A N G S +
Sbjct: 47 ISNVTLEDSGTYTCVASNSAGTVSASVT 74
>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig3_Robo: domain similar to the
third immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in the
development of the central nervous system (CNS), and are
receptors of Slit protein. Slit is a repellant secreted
by the neural cells in the midline. Slit acts through
Robo to prevent most neurons from crossing the midline
from either side. Three mammalian Robo homologs (robo1,
-2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural axons,
which cross the midline, express low levels of Robo;
longitudinal axons, which avoid the midline, express high
levels of Robo. robo1, -2, and -3 are expressed by
commissural neurons in the vertebrate spinal cord and
Slits 1, -2, -3 are expressed at the ventral midline.
Robo-3 is a divergent member of the Robo family which
instead of being a positive regulator of slit
responsiveness, antagonizes slit responsiveness in
precrossing axons. The Slit-Robo interaction is mediated
by the second leucine-rich repeat (LRR) domain of Slit
and the two N-terminal Ig domains of Robo, Ig1 and Ig2.
The primary Robo binding site for Slit2 has been shown by
surface plasmon resonance experiments and mutational
analysis to be is the Ig1 domain, while the Ig2 domain
has been proposed to harbor a weak secondary binding
site.
Length = 69
Score = 52.4 bits (126), Expect = 2e-08
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 1657 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716
F+ E GDP+PT+ W +ED + P + KS+ I R V D G + AEN
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGEL---PKGRAEILDDKSLKI-RNVTAGDEGSYTCEAEN 56
Query: 1717 RGGKAKCSANLVV 1729
GK + SA+L V
Sbjct: 57 MVGKIEASASLTV 69
Score = 38.2 bits (89), Expect = 0.002
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 934 AHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993
F+C + DP TV W L G R + ++D L+I +V D G YTC+A
Sbjct: 1 VEFQCEVG--GDPVPTVLWRKEDGELPKG-RAEILDDKS---LKIRNVTAGDEGSYTCEA 54
Query: 994 TNKHGEATTSCKLTV 1008
N G+ S LTV
Sbjct: 55 ENMVGKIEASASLTV 69
Score = 37.8 bits (88), Expect = 0.003
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 1760 ARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819
F ++ V W K ++ P R + L++ +L I D G+Y C A N
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGEL-PKGRAEILDDK---SLKIRNVTAGDEGSYTCEAEN 56
Query: 1820 NAGEARCEAELVV 1832
G+ A L V
Sbjct: 57 MVGKIEASASLTV 69
Score = 34.7 bits (80), Expect = 0.037
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 368 LEILGTKIEDTGVYTCRATNKWGQAEISVNL 398
L+I D G YTC A N G+ E S +L
Sbjct: 37 LKIRNVTAGDEGSYTCEAENMVGKIEASASL 67
Score = 34.3 bits (79), Expect = 0.049
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 1340 SLDIDYVYPEDQGEYVCRAYNDHGEAFTKATI 1371
SL I V D+G Y C A N G+ A++
Sbjct: 36 SLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67
Score = 34.3 bits (79), Expect = 0.049
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 563 SLDMDYVYARDSGEYICRATNKWGTAMTKAKVICKVLTV 601
SL + V A D G Y C A N G A LTV
Sbjct: 36 SLKIRNVTAGDEGSYTCEAENMVGKIEASA-----SLTV 69
Score = 33.9 bits (78), Expect = 0.066
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 1113 SLDMDYVYARDSGEYICRATNKWGTAMTKAKVI 1145
SL + V A D G Y C A N G A +
Sbjct: 36 SLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68
Score = 33.1 bits (76), Expect = 0.10
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 736 DPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSA 795
DP V W + G R D L+I V D G Y+C A N G+ SA
Sbjct: 10 DPVPTVLWRKEDGELPKG-RAEILDDKS---LKIRNVTAGDEGSYTCEAENMVGKIEASA 65
Query: 796 SMKV 799
S+ V
Sbjct: 66 SLTV 69
Score = 32.0 bits (73), Expect = 0.29
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 2 EPRADPNLKIEWFKNGVPLSLG-SRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGE 60
E DP + W K L G + I +L I ++ A D YTC+A N++G+
Sbjct: 6 EVGGDPVPTVLWRKEDGELPKGRAEILDDK-----SLKIRNVTAGDEGSYTCEAENMVGK 60
Query: 61 AVSTCTLKI 69
++ +L +
Sbjct: 61 IEASASLTV 69
Score = 31.6 bits (72), Expect = 0.46
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 1445 FECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATN 1504
F+C++ GDP V W LP K R + D N V D G Y C A N
Sbjct: 3 FQCEVG--GDPVPTVLWRKEDGELP-KGRAEILDDKSLKIRN---VTAGDEGSYTCEAEN 56
Query: 1505 LYGMDETRAIL 1515
+ G E A L
Sbjct: 57 MVGKIEASASL 67
Score = 30.1 bits (68), Expect = 1.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 823 EISPVYPEDCGQYSCRAYNDYGEAVTSASMKV 854
+I V D G Y+C A N G+ SAS+ V
Sbjct: 38 KIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69
Score = 29.3 bits (66), Expect = 2.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 272 AEDSGIYTVKATNSKGSATTSGTL 295
A D G YT +A N G S +L
Sbjct: 44 AGDEGSYTCEAENMVGKIEASASL 67
>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig4_Neogenin: fourth
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of vertebrate
embryos in the growing nerve cells. It is also expressed
in other embryonic tissues, and may play a general role
in developmental processes such as cell migration,
cell-cell recognition, and tissue growth regulation.
Included in this group is the tumor suppressor protein
DCC, which is deleted in colorectal carcinoma . DCC and
neogenin each have four Ig-like domains followed by six
fibronectin type III domains, a transmembrane domain, and
an intracellular domain.
Length = 71
Score = 51.5 bits (123), Expect = 4e-08
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 1762 FDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNA 1821
F+ +++ V W+KNG +IP +K ++E NL L ++++ D G Y+C+A N+
Sbjct: 4 FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKS---DEGFYQCIAENDV 60
Query: 1822 GEARCEAELVV 1832
G + A+L++
Sbjct: 61 GNVQAGAQLII 71
Score = 41.1 bits (96), Expect = 2e-04
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1659 FEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRG 1718
FE E G P PT+KW + + S F+I +L + + D G + IAEN
Sbjct: 4 FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVK---SDEGFYQCIAENDV 60
Query: 1719 GKAKCSANLVV 1729
G + A L++
Sbjct: 61 GNVQAGAQLII 71
Score = 38.0 bits (88), Expect = 0.002
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995
FEC +T P+ TV+W NG + K + + L++ + D G Y C A N
Sbjct: 4 FECEVT--GKPTPTVKWVKNGDMVIPSDYFKIVKEHN---LQVLGLVKSDEGFYQCIAEN 58
Query: 996 KHGEATTSCKLTV 1008
G +L +
Sbjct: 59 DVGNVQAGAQLII 71
>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell
adhesion molecule contactin-2 and similar proteins.
Ig4_Contactin-2-like: fourth Ig domain of the neural cell
adhesion molecule contactin-2. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1,
axonin-1) facilitates cell adhesion by homophilic binding
between molecules in apposed membranes. The first four Ig
domains form the intermolecular binding fragment which
arranges as a compact U-shaped module by contacts between
Ig domains 1 and 4, and domains 2 and 3. It has been
proposed that a linear zipper-like array forms, from
contactin-2 molecules alternatively provided by the two
apposed membranes.
Length = 85
Score = 50.3 bits (120), Expect = 2e-07
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 918 EFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILE 977
E+L +D + +EC+ + +P W NG+ L++ +RI+ L
Sbjct: 1 EWLKVISDTEADIGSSLRWECK--ASGNPRPAYRWLKNGQPLASENRIEVEAG----DLR 54
Query: 978 INDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
I + L DSG+Y C A NKHG S +L V
Sbjct: 55 ITKLSLSDSGMYQCVAENKHGTIYASAELAV 85
Score = 46.4 bits (110), Expect = 3e-06
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 1745 FLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIE 1804
+L IS ++G R++ K S WLKNG+ + + R + D T L
Sbjct: 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKL--- 58
Query: 1805 AVVEDSGAYECVAMNNAGEARCEAELVV 1832
+ DSG Y+CVA N G AEL V
Sbjct: 59 -SLSDSGMYQCVAENKHGTIYASAELAV 85
Score = 41.4 bits (97), Expect = 2e-04
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 1644 KKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVF 1703
K I A R+E + G+P P +W + P+ S ++ L + ++
Sbjct: 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV----EAGDLRITKLS 59
Query: 1704 MEDSGVFAVIAENRGGKAKCSANLVV 1729
+ DSG++ +AEN+ G SA L V
Sbjct: 60 LSDSGMYQCVAENKHGTIYASAELAV 85
Score = 38.4 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 1442 STKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVA---MNFGWVYPEDSGEY 1498
S ++EC+ + G+P W NG+PL +NR V + + DSG Y
Sbjct: 16 SLRWECKAS--GNPRPAYRWLKNGQPLASENRI-------EVEAGDLRITKLSLSDSGMY 66
Query: 1499 LCRATNLYG 1507
C A N +G
Sbjct: 67 QCVAENKHG 75
Score = 36.0 bits (83), Expect = 0.016
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 736 DPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSA 795
+P+ W NG+P+ + +R L I+ + D G Y C A N +G SA
Sbjct: 26 NPRPAYRWLKNGQPLASENRIEVEAG----DLRITKLSLSDSGMYQCVAENKHGTIYASA 81
Query: 796 SMKV 799
+ V
Sbjct: 82 ELAV 85
Score = 36.0 bits (83), Expect = 0.019
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 6 DPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTC 65
+P W KNG PL+ +RI L I L DS +Y C A N G ++
Sbjct: 26 NPRPAYRWLKNGQPLASENRIEVEAG----DLRITKLSLSDSGMYQCVAENKHGTIYASA 81
Query: 66 TLKI 69
L +
Sbjct: 82 ELAV 85
Score = 34.5 bits (79), Expect = 0.066
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 603 VEWFYNGKKLPHGHR-YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
W NG+ L +R D I L + +SG+Y+C A NK+G+ A L
Sbjct: 31 YRWLKNGQPLASENRIEVEAGDLRITKLSL-----SDSGMYQCVAENKHGTIYASAELA 84
Score = 33.7 bits (77), Expect = 0.11
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 524 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATN 583
++C+ P R W NG+P A+ +R++ + G + + + DSG Y C A N
Sbjct: 19 WECKASGNPRPAYR--WLKNGQPLASENRIEV--EAGDLRITK--LSLSDSGMYQCVAEN 72
Query: 584 KWGTAMTKAKV 594
K GT A++
Sbjct: 73 KHGTIYASAEL 83
Score = 33.7 bits (77), Expect = 0.11
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 1074 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATN 1133
++C+ P R W NG+P A+ +R++ + G + + + DSG Y C A N
Sbjct: 19 WECKASGNPRPAYR--WLKNGQPLASENRIEV--EAGDLRITK--LSLSDSGMYQCVAEN 72
Query: 1134 KWGTAMTKAKV 1144
K GT A++
Sbjct: 73 KHGTIYASAEL 83
Score = 32.6 bits (74), Expect = 0.29
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 341 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG----QAEISV 396
+L NG+P+ + +RI L I + D+G+Y C A NK G AE++V
Sbjct: 30 AYRWLKNGQPLASENRIEVEAG----DLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85
Score = 30.3 bits (68), Expect = 1.9
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS-DFGFVVMDIAYVQSHDSGEY 482
G S +EC + +P W NG+P+ +NR+++ + D + ++ DSG Y
Sbjct: 14 GSSLRWECKAS--GNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLS-----DSGMY 66
Query: 483 VCRAWN 488
C A N
Sbjct: 67 QCVAEN 72
>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down Syndrome
Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight
immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion
molecule (DSCAM). DSCAM is a cell adhesion molecule
expressed largely in the developing nervous system. The
gene encoding DSCAM is located at human chromosome 21q22,
the locus associated with the mental retardation
phenotype of Down Syndrome. DSCAM is predicted to be the
largest member of the IG superfamily. It has been
demonstrated that DSCAM can mediate cation-independent
homophilic intercellular adhesion.
Length = 88
Score = 49.3 bits (117), Expect = 4e-07
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 1757 GQLARFDAKISATKPLDVYWLKNGKKIIPDI-RY----KTLEEDNLFTLLIIEAVVEDSG 1811
GQ KP+ V W K + I P++ RY K + ++ + TL I+ V EDSG
Sbjct: 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSG 60
Query: 1812 AYECVAMNNAGEARCEAELVVQSKKAP 1838
+ C A+N+ GE R +L VQ P
Sbjct: 61 FFSCHAINSYGEDRGIIQLTVQEPPDP 87
Score = 29.6 bits (66), Expect = 3.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 626 IVILDILYCYEENSGVYECRATNKYGSD 653
I L IL E+SG + C A N YG D
Sbjct: 46 ISTLQILPTVREDSGFFSCHAINSYGED 73
Score = 29.2 bits (65), Expect = 5.6
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 814 GMEVFISFHEISPVYPEDCGQYSCRAYNDYGE 845
G EV IS +I P ED G +SC A N YGE
Sbjct: 42 GDEV-ISTLQILPTVREDSGFFSCHAINSYGE 72
Score = 28.8 bits (64), Expect = 5.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 767 LEISPVYPEDCGQYSCRAYNDYGE 790
L+I P ED G +SC A N YGE
Sbjct: 49 LQILPTVREDSGFFSCHAINSYGE 72
Score = 28.8 bits (64), Expect = 6.8
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 1671 IKWFREDFPITSSPDFQIHTFSTK-------SILIMRQVFMEDSGVFAVIAENRGGKAKC 1723
++W +ED I +P+ + STK S L + EDSG F+ A N G+ +
Sbjct: 18 VRWEKEDRII--NPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG 75
Query: 1724 SANLVVEEK 1732
L V+E
Sbjct: 76 IIQLTVQEP 84
>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin.
Ig5_Contactin_like: Fifth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four
fibronectin type III(FnIII) domains anchored to the
membrane by glycosylphosphatidylinositol. The first
four Ig domains form the intermolecular binding
fragment, which arranges as a compact U-shaped module
via contacts between Ig domains 1 and 4, and between Ig
domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play
a part in the neuronal processes of neurite outgrowth,
axon guidance and fasciculation, and neuronal
migration. This group also includes contactin-1 and
contactin-5. The different contactins show different
expression patterns in the central nervous system.
During development and in adulthood, contactin-2 is
transiently expressed in subsets of central and
peripheral neurons. Contactin-5 is expressed
specifically in the rat postnatal nervous system,
peaking at about 3 weeks postnatal, and a lack of
contactin-5 (NB-2) results in an impairment of neuronal
act ivity in the rat auditory system. Contactin-5 is
highly expressed in the adult human brain in the
occipital lobe and in the amygdala. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 47.8 bits (114), Expect = 8e-07
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEA 61
+P+A P I W K L+ SRI D +L I ++ D YTC A N G+A
Sbjct: 9 KPKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKA 65
Query: 62 VSTCTLKI 69
ST +L +
Sbjct: 66 NSTGSLSV 73
Score = 45.1 bits (107), Expect = 8e-06
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 937 ECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNK 996
EC+ P P T+ W + L+ SRI I G LEI +V D G YTC A N
Sbjct: 7 ECK--PKAAPKPTISWSKGTELLTNSSRI-CIWPDG--SLEILNVTKSDEGKYTCFAENF 61
Query: 997 HGEATTSCKLTV 1008
G+A ++ L+V
Sbjct: 62 FGKANSTGSLSV 73
Score = 37.0 bits (86), Expect = 0.006
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 733 PTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAV 792
P PK + W + + SR G LEI V D G+Y+C A N +G+A
Sbjct: 10 PKAAPKPTISWSKGTELLTNSSRI-CIWPDG--SLEILNVTKSDEGKYTCFAENFFGKAN 66
Query: 793 TSASMKV 799
++ S+ V
Sbjct: 67 STGSLSV 73
Score = 37.0 bits (86), Expect = 0.006
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 520 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYIC 579
G V +C +PK+ P I W SR+ ++ G SL++ V D G+Y C
Sbjct: 2 GDVIIEC--KPKAAPKPTISWSKGTELLTNSSRI-CIWPDG--SLEILNVTKSDEGKYTC 56
Query: 580 RATNKWGTA 588
A N +G A
Sbjct: 57 FAENFFGKA 65
Score = 37.0 bits (86), Expect = 0.006
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 1070 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYIC 1129
G V +C +PK+ P I W SR+ ++ G SL++ V D G+Y C
Sbjct: 2 GDVIIEC--KPKAAPKPTISWSKGTELLTNSSRI-CIWPDG--SLEILNVTKSDEGKYTC 56
Query: 1130 RATNKWGTA 1138
A N +G A
Sbjct: 57 FAENFFGKA 65
Score = 32.4 bits (74), Expect = 0.25
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 368 LEILGTKIEDTGVYTCRATNKWGQAEISVNLE 399
LEIL D G YTC A N +G+A + +L
Sbjct: 41 LEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72
Score = 32.4 bits (74), Expect = 0.25
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 1776 WLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
L N +I + D +L I+ D G Y C A N G+A L V
Sbjct: 26 LLTNSSRI-------CIWPDG--SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73
Score = 31.3 bits (71), Expect = 0.61
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 1724
P PTI W + +T+S I + S L + V D G + AEN GKA +
Sbjct: 12 AAPKPTISWSKGTELLTNSSR--ICIWPDGS-LEILNVTKSDEGKYTCFAENFFGKANST 68
Query: 1725 ANLVV 1729
+L V
Sbjct: 69 GSLSV 73
>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig2_Robo: domain similar to
the second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS),
and are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 86
Score = 47.0 bits (112), Expect = 2e-06
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 3 PRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAV 62
PR P + W K+G PL+L + D G L I R D Y C ATN++GE
Sbjct: 21 PRGHPEPTVSWRKDGQPLNLDNERVRIVDDG--NLLIAEARKSDEGTYKCVATNMVGERE 78
Query: 63 S 63
S
Sbjct: 79 S 79
Score = 47.0 bits (112), Expect = 2e-06
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN-RVKMVSDFGFVVMDIAYVQSHDSGEY 482
G+ A EC+ P PE V W +G+P+ N RV++V D + IA + D G Y
Sbjct: 11 GEMAVLECS-PPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLL---IAEARKSDEGTY 66
Query: 483 VCRAWN 488
C A N
Sbjct: 67 KCVATN 72
Score = 45.5 bits (108), Expect = 7e-06
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 1774 VYWLKNGKKII-PDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCE-AELV 1831
V W K+G+ + + R + +++ NL LI EA D G Y+CVA N GE A L
Sbjct: 29 VSWRKDGQPLNLDNERVRIVDDGNL---LIAEARKSDEGTYKCVATNMVGERESAAARLS 85
Query: 1832 V 1832
V
Sbjct: 86 V 86
Score = 41.2 bits (97), Expect = 2e-04
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 1446 ECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNL 1505
EC P G P V W +G+PL N I D G + + D G Y C ATN+
Sbjct: 17 ECS-PPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAE--ARKSDEGTYKCVATNM 73
Query: 1506 YGMDETRA 1513
G E+ A
Sbjct: 74 VGERESAA 81
Score = 38.5 bits (90), Expect = 0.002
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 151 PVNDPELKVEWFHNGKPIFHKN-RVKMVSDFGFVVMDIAYVQSHDSGEYVC 200
P PE V W +G+P+ N RV++V D + IA + D G Y C
Sbjct: 21 PRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLL---IAEARKSDEGTYKC 68
Score = 37.8 bits (88), Expect = 0.004
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKAL-SAGSRIKTINDFGFVILEINDV 981
P+D +A +A EC P P TV W +G+ L R++ ++D +I E
Sbjct: 3 PSDTQVAVGEMAVLECS-PPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKS 61
Query: 982 YLRDSGLYTCKATNKHGE 999
D G Y C ATN GE
Sbjct: 62 ---DEGTYKCVATNMVGE 76
Score = 35.4 bits (82), Expect = 0.030
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 530 PKSDPTMRIDWFFNGRPFA-TGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTA 588
P+ P + W +G+P RV+ V D G +L + D G Y C ATN G
Sbjct: 21 PRGHPEPTVSWRKDGQPLNLDNERVRIVDD-G--NLLIAEARKSDEGTYKCVATNMVGER 77
Query: 589 MTKA 592
+ A
Sbjct: 78 ESAA 81
Score = 35.4 bits (82), Expect = 0.030
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 1080 PKSDPTMRIDWFFNGRPFA-TGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTA 1138
P+ P + W +G+P RV+ V D G +L + D G Y C ATN G
Sbjct: 21 PRGHPEPTVSWRKDGQPLNLDNERVRIVDD-G--NLLIAEARKSDEGTYKCVATNMVGER 77
Query: 1139 MTKA 1142
+ A
Sbjct: 78 ESAA 81
Score = 34.7 bits (80), Expect = 0.048
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 323 GEIAHFEASLIPVGDQTMTVEFLYNGKPI-EASHRIRTVHAFGMVVLEILGTKIEDTGVY 381
GE+A E S P G TV + +G+P+ + R+R V +++ E + D G Y
Sbjct: 11 GEMAVLECS-PPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAE---ARKSDEGTY 66
Query: 382 TCRATNKWGQAE 393
C ATN G+ E
Sbjct: 67 KCVATNMVGERE 78
Score = 32.4 bits (74), Expect = 0.37
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 733 PTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAV 792
P P+ V W +G+P+ + D G ++ I+ D G Y C A N GE
Sbjct: 21 PRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLL--IAEARKSDEGTYKCVATNMVGERE 78
Query: 793 TSA 795
++A
Sbjct: 79 SAA 81
Score = 30.1 bits (68), Expect = 2.2
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 1719
G P PT+ W ++ P+ + ++ + L++ + D G + +A N G
Sbjct: 23 GHPEPTVSWRKDGQPLNLD-NERVRIVDDGN-LLIAEARKSDEGTYKCVATNMVG 75
>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in
neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin
(Ig)-like domain in neuregulins (NRGs). NRGs are
signaling molecules, which participate in cell-cell
interactions in the nervous system, breast, heart, and
other organ systems, and are implicated in the pathology
of diseases including schizophrenia, multiple sclerosis,
and breast cancer. There are four members of the
neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1
protein, binds to and activates the tyrosine kinases
receptors ErbB3 and ErbB4, initiating signaling cascades.
The other NRGs proteins bind one or the other or both of
these ErbBs. NRG-1 has multiple functions; for example,
in the brain it regulates various processes such as
radial glia formation and neuronal migration, dendritic
development, and expression of neurotransmitters
receptors; in the peripheral nervous system NRG-1
regulates processes such as target cell differentiation,
and Schwann cell survival. There are many NRG-1 isoforms,
which arise from the alternative splicing of mRNA. Less
is known of the functions of the other NRGs. NRG-2 and -3
are expressed predominantly in the nervous system. NRG-2
is expressed by motor neurons and terminal Schwann cells,
and is concentrated near synaptic sites and may be a
signal that regulates synaptic differentiation. NRG-4 has
been shown to direct pancreatic islet cell development
towards the delta-cell lineage.
Length = 75
Score = 46.0 bits (109), Expect = 4e-06
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 938 CRLTPTNDPSMTVEWFHNGKALSAGSRIKTI---NDFGFVILEINDVYLRDSGLYTCKAT 994
C T PS+ +WF +GK L+ ++ + I N L+IN L DSG YTC
Sbjct: 5 CEATSEY-PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVE 63
Query: 995 NKHGEATTS 1003
N G T +
Sbjct: 64 NILGNDTVT 72
Score = 41.4 bits (97), Expect = 2e-04
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 1447 CQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIY---DFGYVAMNFGWVYPEDSGEYLCRAT 1503
C+ A P+++ +WF +GK L KN+ I + DSGEY C
Sbjct: 5 CE-ATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVE 63
Query: 1504 NLYGMDETRA 1513
N+ G D A
Sbjct: 64 NILGNDTVTA 73
Score = 40.6 bits (95), Expect = 3e-04
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTF---DFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
P+L+ +WFK+G L+ ++ R+ L IN + DS YTC N+LG
Sbjct: 12 PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71
Query: 64 TCTL 67
T +
Sbjct: 72 TANV 75
Score = 35.2 bits (81), Expect = 0.024
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 439 PELKVEWFHNGKPIFHKNRVKMV---SDFGFVVMDIAYVQSHDSGEYVCRAWN 488
P L+ +WF +GK + KN+ + + + + I + DSGEY C N
Sbjct: 12 PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64
Score = 32.9 bits (75), Expect = 0.20
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTK---SILIMRQVFMEDSGVFAVIAENRGGKA 1721
P KWF++ + + K S L + + + DSG + + EN G
Sbjct: 10 EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69
Query: 1722 KCSANL 1727
+AN+
Sbjct: 70 TVTANV 75
Score = 32.5 bits (74), Expect = 0.24
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 347 NGKPIEASHRIRTV---HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 398
+GK + ++ R + + L+I K+ D+G YTC N G ++ N+
Sbjct: 21 DGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTANV 75
Score = 32.5 bits (74), Expect = 0.27
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 155 PELKVEWFHNGKPIFHKNRVKMV---SDFGFVVMDIAYVQSHDSGEYVC 200
P L+ +WF +GK + KN+ + + + + I + DSGEY C
Sbjct: 12 PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTC 60
Score = 31.7 bits (72), Expect = 0.40
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 732 TPTDDPKLKVEWFWNGKPMKTGSRFRTFC---DFGFVILEISPVYPEDCGQYSCRAYNDY 788
++ P L+ +WF +GK + ++ R L+I+ D G+Y+C N
Sbjct: 7 ATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENIL 66
Query: 789 GEAVTSASM 797
G +A++
Sbjct: 67 GNDTVTANV 75
Score = 31.0 bits (70), Expect = 0.78
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 534 PTMRIDWFFNGRPFATGSRVKTVY---DFGFISLDMDYVYARDSGEYICRATNKWGTAMT 590
P++R WF +G+ ++ + + L ++ DSGEY C N G
Sbjct: 12 PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71
Query: 591 KAKV 594
A V
Sbjct: 72 TANV 75
Score = 31.0 bits (70), Expect = 0.78
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 1084 PTMRIDWFFNGRPFATGSRVKTVY---DFGFISLDMDYVYARDSGEYICRATNKWGTAMT 1140
P++R WF +G+ ++ + + L ++ DSGEY C N G
Sbjct: 12 PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71
Query: 1141 KAKV 1144
A V
Sbjct: 72 TANV 75
Score = 30.6 bits (69), Expect = 1.3
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 1776 WLKNGKKI-----IPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEA 1824
W K+GK++ +I+ + ++++ L I +A + DSG Y CV N G
Sbjct: 18 WFKDGKELNRKNKPRNIKIRNKKKNS--ELQINKAKLADSGEYTCVVENILGND 69
>gnl|CDD|143250 cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-like domain of
nephrin. Ig8_hNephrin_like: domain similar to the
eighth immunoglobulin-like domain in human nephrin.
Nephrin is an integral component of the slit diaphragm,
and is a central component of the glomerular
ultrafilter. Nephrin plays a structural role, and has a
role in signaling. Nephrin is a transmembrane protein
having a short intracellular portion, and an
extracellular portion comprised of eight Ig-like
domains, and one fibronectin type III-like domain. The
extracellular portions of nephrin, from neighboring
foot processes of separate podocyte cells, may interact
with each other, and in association with other
components of the slit diaphragm, form a porous
molecular sieve within the slit pore. The
intracellular portion of nephrin is associated with
linker proteins, which connect nephrin to the actin
cytoskeleton. The intracellular portion is tyrosine
phosphorylated, and mediates signaling from the slit
diaphragm into the podocytes.
Length = 109
Score = 44.2 bits (104), Expect = 4e-05
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 7 PNLKIEWFKNGVPLSLGS--RIRSTFDFGLVTLSI----NSLRADDSAIYTCKATNLLGE 60
P ++ W KNGVPL LG+ +T G V SI N A D A++TC A N LGE
Sbjct: 36 PRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE 95
>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor and similar
proteins. Ig2_FGFR_like: domain similar to the second
immunoglobulin (Ig)-like domain of fibroblast growth
factor (FGF) receptor. FGF receptors bind FGF signaling
polypeptides. FGFs participate in multiple processes such
as morphogenesis, development, and angiogenesis. FGFs
bind to four FGF receptor tyrosine kinases (FGFR1, -2,
-3, -4). Receptor diversity is controlled by alternative
splicing producing splice variants with different ligand
binding characteristics and different expression
patterns. FGFRs have an extracellular region comprised of
three Ig-like domains, a single transmembrane helix, and
an intracellular tyrosine kinase domain. Ligand binding
and specificity reside in the Ig-like domains 2 and 3,
and the linker region that connects these two. FGFR
activation and signaling depend on FGF-induced
dimerization, a process involving cell surface heparin or
heparin sulfate proteoglycans. This group also contains
fibroblast growth factor (FGF) receptor_like-1(FGFRL1).
FGFRL1 does not have a protein tyrosine kinase domain at
its C terminus; neither does its cytoplasmic domain
appear to interact with a signaling partner. It has been
suggested that FGFRL1 may not have any direct signaling
function, but instead acts as a decoy receptor trapping
FGFs and preventing them from binding other receptors.
Length = 85
Score = 43.1 bits (102), Expect = 5e-05
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 1756 VGQLARFDAKISATKPLDVYWLKNGKKIIPDIR---YKTLEEDNLFTLLIIEAVVEDSGA 1812
G R S + WLK+GK + R YK ++ +TL++ V DSG
Sbjct: 8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKK--WTLILESVVPSDSGK 65
Query: 1813 YECVAMNNAGE 1823
Y C+ N G
Sbjct: 66 YTCIVENKYGS 76
Score = 41.6 bits (98), Expect = 2e-04
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRST-FDFGLVTLSINSLRADDSAIYTCKATNLLGEAV 62
+P I W K+G P RI TL + S+ DS YTC N G
Sbjct: 19 SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSIN 78
Query: 63 STCTLKI 69
T + +
Sbjct: 79 HTYKVDV 85
Score = 41.2 bits (97), Expect = 3e-04
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 1442 STKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGW------VYPEDS 1495
+ + +C + G+P + W +GKP ++R GY W V P DS
Sbjct: 11 TVRLKCPAS--GNPRPTITWLKDGKPFKKEHRIG-----GYKVRKKKWTLILESVVPSDS 63
Query: 1496 GEYLCRATNLYG 1507
G+Y C N YG
Sbjct: 64 GKYTCIVENKYG 75
Score = 40.1 bits (94), Expect = 6e-04
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 516 VPEAGKVHFDCRLEPKS-DPTMRIDWFFNGRPFATGSRVKTVYDF---GFISLDMDYVYA 571
VP V C P S +P I W +G+PF R+ Y + +L ++ V
Sbjct: 6 VPAGSTVRLKC---PASGNPRPTITWLKDGKPFKKEHRIG-GYKVRKKKW-TLILESVVP 60
Query: 572 RDSGEYICRATNKWGT 587
DSG+Y C NK+G+
Sbjct: 61 SDSGKYTCIVENKYGS 76
Score = 40.1 bits (94), Expect = 6e-04
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 1066 VPEAGKVHFDCRLEPKS-DPTMRIDWFFNGRPFATGSRVKTVYDF---GFISLDMDYVYA 1121
VP V C P S +P I W +G+PF R+ Y + +L ++ V
Sbjct: 6 VPAGSTVRLKC---PASGNPRPTITWLKDGKPFKKEHRIG-GYKVRKKKW-TLILESVVP 60
Query: 1122 RDSGEYICRATNKWGT 1137
DSG+Y C NK+G+
Sbjct: 61 SDSGKYTCIVENKYGS 76
Score = 36.6 bits (85), Expect = 0.012
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 737 PKLKVEWFWNGKPMKTGSRFR--TFCDFGFVILEISPVYPEDCGQYSCRAYNDYGE 790
P+ + W +GKP K R + L + V P D G+Y+C N YG
Sbjct: 22 PRPTITWLKDGKPFKKEHRIGGYKVRKKKWT-LILESVVPSDSGKYTCIVENKYGS 76
Score = 36.2 bits (84), Expect = 0.015
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 1658 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS-ILIMRQVFMEDSGVFAVIAEN 1716
R + G+P PTI W ++ P + K LI+ V DSG + I EN
Sbjct: 13 RLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVEN 72
Query: 1717 RGG 1719
+ G
Sbjct: 73 KYG 75
Score = 33.9 bits (78), Expect = 0.083
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTIN--DFGFVILEINDVYLRDSGLYTCKA 993
+C + P++T W +GK RI + L + V DSG YTC
Sbjct: 14 LKCPASGNPRPTIT--WLKDGKPFKKEHRIGGYKVRKKKWT-LILESVVPSDSGKYTCIV 70
Query: 994 TNKHGEATTSCKLTV 1008
NK+G + K+ V
Sbjct: 71 ENKYGSINHTYKVDV 85
Score = 33.5 bits (77), Expect = 0.12
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 336 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 391
G+ T+ +L +GKP + HRI + ++LE + D+G YTC NK+G
Sbjct: 20 GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESV--VPSDSGKYTCIVENKYGS 76
Score = 31.6 bits (72), Expect = 0.71
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1340 SLDIDYVYPEDQGEYVCRAYNDHGE 1364
+L ++ V P D G+Y C N +G
Sbjct: 52 TLILESVVPSDSGKYTCIVENKYGS 76
Score = 29.3 bits (66), Expect = 4.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 824 ISPVYPEDCGQYSCRAYNDYGE 845
+ V P D G+Y+C N YG
Sbjct: 55 LESVVPSDSGKYTCIVENKYGS 76
>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of
myotilin, palladin, and myopalladin. Ig_Myotilin_like_C:
immunoglobulin (Ig)-like domain in myotilin, palladin,
and myopalladin. Myotilin, palladin, and myopalladin
function as scaffolds that regulate actin organization.
Myotilin and myopalladin are most abundant in skeletal
and cardiac muscle; palladin is ubiquitously expressed in
the organs of developing vertebrates and plays a key
role in cellular morphogenesis. The three family members
each interact with specific molecular partners: all three
bind to alpha-actinin; in addition, palladin also binds
to vasodilator-stimulated phosphoprotein (VASP) and
ezrin, myotilin binds to filamin and actin, and
myopalladin also binds to nebulin and cardiac ankyrin
repeat protein (CARP).
Length = 75
Score = 42.5 bits (100), Expect = 7e-05
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 1760 ARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNL--FTLLIIEAVVEDSGAYECVA 1817
R + ++SA P ++W KN + + + +L +DN LLI A ED+G Y A
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 1818 MNNAGEARCEAELVV 1832
+N AG C A L V
Sbjct: 61 VNEAGVVSCNARLDV 75
Score = 36.7 bits (85), Expect = 0.007
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 1657 ARFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKSI-LIMRQVFMEDSGVFAVIA 1714
R E P P I W + + +T + D ++ + I L+++ ED+G + V A
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 1715 ENRGGKAKCSANLVV 1729
N G C+A L V
Sbjct: 61 VNEAGVVSCNARLDV 75
Score = 32.9 bits (75), Expect = 0.17
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 259 DFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTLKCLERLFV 303
+ G + L I A ED+G YTV A N G + C RL V
Sbjct: 37 NCGRICLLIQNANKEDAGWYTVSAVNEAGVVS------CNARLDV 75
Score = 32.1 bits (73), Expect = 0.31
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 937 ECRLTPTNDPSMTVEWFHNGKALSAG-SRIKTIND-FGFVILEINDVYLRDSGLYTCKAT 994
ECR++ P + W N + L+ RI D G + L I + D+G YT A
Sbjct: 4 ECRVSAI--PPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61
Query: 995 NKHGEATTSCKLTV 1008
N+ G + + +L V
Sbjct: 62 NEAGVVSCNARLDV 75
>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain. Members of the immunoglobulin
superfamily are found in hundreds of proteins of
different functions. Examples include antibodies, the
giant muscle kinase titin and receptor tyrosine kinases.
Immunoglobulin-like domains may be involved in
protein-protein and protein-ligand interactions. The Pfam
alignments do not include the first and last strand of
the immunoglobulin-like domain.
Length = 62
Score = 42.1 bits (99), Expect = 7e-05
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 1757 GQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLE-EDNLFTLLIIEAVVEDSGAYEC 1815
G +S +DV W K GK + T E + TL I EDSG Y C
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60
Query: 1816 VA 1817
V
Sbjct: 61 VV 62
Score = 36.0 bits (83), Expect = 0.012
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 938 CRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGF-VILEINDVYLRDSGLYTCKA 993
C ++ +T WF GK L + + T + + L I++V DSG YTC
Sbjct: 8 CSVSGPPQVDVT--WFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
Score = 33.7 bits (77), Expect = 0.062
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGL-VTLSINSLRADDSAIYTCKA 54
P + + WFK G L + + + + +TL+I+++ +DS YTC
Sbjct: 12 GPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
Score = 33.3 bits (76), Expect = 0.11
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 526 CRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFIS-LDMDYVYARDSGEYICRA 581
C + + WF G+ + V T + L + V DSG Y C
Sbjct: 8 CSVSGPPQVD--VTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
Score = 33.3 bits (76), Expect = 0.11
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 1076 CRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFIS-LDMDYVYARDSGEYICRA 1131
C + + WF G+ + V T + L + V DSG Y C
Sbjct: 8 CSVSGPPQVD--VTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
Score = 32.9 bits (75), Expect = 0.13
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 734 TDDPKLKVEWFWNGKPMKTGSRFRTFCDFGF-VILEISPVYPEDCGQYSCRA 784
+ P++ V WF GK ++ + T + + L IS V PED G Y+C
Sbjct: 11 SGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
Score = 32.5 bits (74), Expect = 0.17
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 1664 DGDPLPTIKWFRED-FPITSSPDFQIHTFSTKSILIMRQVFMEDSGVF 1710
G P + WF+E S+ + L + V EDSG +
Sbjct: 11 SGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTY 58
Score = 31.7 bits (72), Expect = 0.29
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM-DIAYVQSHDSGEY 482
G S C+++ P++ V WF GK + V + + I+ V DSG Y
Sbjct: 1 GSSVTLTCSVS--GPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTY 58
Query: 483 VCRA 486
C
Sbjct: 59 TCVV 62
Score = 31.7 bits (72), Expect = 0.31
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 347 NGKPIEASHRIRTVHAFG-MVVLEILGTKIEDTGVYTCRA 385
GK +E S + T + L I ED+G YTC
Sbjct: 23 EGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
Score = 31.4 bits (71), Expect = 0.46
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 601 VIVEWFYNGKKLPHGHRYRTFHDFG-IVILDILYCYEENSGVYECRA 646
V V WF GK L T + + L I E+SG Y C
Sbjct: 16 VDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-1 and similar
proteins. Ig1_NCAM-1 like: first immunoglobulin
(Ig)-like domain of neural cell adhesion molecule NCAM-1.
NCAM-1 plays important roles in the development and
regeneration of the central nervous system, in
synaptogenesis and neural migration. NCAM mediates
cell-cell and cell-substratum recognition and adhesion
via homophilic (NCAM-NCAM), and heterophilic
(NCAM-nonNCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular extensions.
The extracellular portion of NCAM has five N-terminal
Ig-like domains and two fibronectin type III domains. The
double zipper adhesion complex model for NCAM homophilic
binding involves the Ig1, Ig2, and Ig3 domains. By this
model, Ig1 and Ig2 mediate dimerization of NCAM molecules
situated on the same cell surface (cis interactions), and
Ig3 domains mediate interactions between NCAM molecules
expressed on the surface of opposing cells (trans
interactions), through binding to the Ig1 and Ig2
domains. The adhesive ability of NCAM is modulated by the
addition of polysialic acid chains to the fifth Ig-like
domain. Also included in this group is NCAM-2 (also known
as OCAM/mamFas II and RNCAM). NCAM-2 is differentially
expressed in the developing and mature olfactory
epithelium (OE).
Length = 92
Score = 42.5 bits (100), Expect = 1e-04
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 1750 SSAVINVGQLARFDAKISATKPLDVYWLK-NGKKIIPDIRYKTLE-EDNLFTLLIIEAVV 1807
S I+VG+ F ++ +P D+ W NG+K++ + ++ +D TL I A +
Sbjct: 8 SQGEISVGESKFFLCQVIG-EPKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANI 66
Query: 1808 EDSGAYECVAMNNAGEARCEAELVVQ 1833
ED+G Y+CVA + G EA + ++
Sbjct: 67 EDAGIYKCVATDAKGTES-EATVNLK 91
Score = 36.0 bits (83), Expect = 0.022
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 347 NGKPIEASHRIRTVHAFGMV-VLEILGTKIEDTGVYTCRATNKWGQ-AEISVNLE 399
NG+ + +I V + L I IED G+Y C AT+ G +E +VNL+
Sbjct: 37 NGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91
Score = 33.6 bits (77), Expect = 0.15
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 950 VEWFH-NGKALSAGSRIKTINDFGFV-ILEINDVYLRDSGLYTCKATNKHG---EATTSC 1004
+ WF NG+ L +I + + L I + + D+G+Y C AT+ G EAT +
Sbjct: 31 ISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNL 90
Query: 1005 KL 1006
K+
Sbjct: 91 KI 92
Score = 30.2 bits (68), Expect = 2.4
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 10 KIEWFK-NGVPLSLGSRIRSTFDFG-LVTLSINSLRADDSAIYTCKATNLLG-EAVSTCT 66
I WF NG L +I + TL+I + +D+ IY C AT+ G E+ +T
Sbjct: 30 DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVN 89
Query: 67 LKI 69
LKI
Sbjct: 90 LKI 92
Score = 29.4 bits (66), Expect = 3.9
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 603 VEWFY-NGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
+ WF NG+KL +D L I E++G+Y+C AT+ G++
Sbjct: 31 ISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE 83
>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_2: subgroup of the immunoglobulin (Ig) domain found in
the Ig superfamily. The Ig superfamily is a heterogenous
group of proteins, built on a common fold comprised of a
sandwich of two beta sheets. Members of the Ig
superfamily are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 42.1 bits (99), Expect = 1e-04
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 945 DPSMTVEW-FHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTS 1003
DP + W +GK +S SR + D G L+I ++D+G +TC A+N GEAT +
Sbjct: 13 DPEPAIHWISPDGKLISNSSR-TLVYDNG--TLDILITTVKDTGSFTCIASNAAGEATAT 69
Query: 1004 CKLTV 1008
+L +
Sbjct: 70 VELHI 74
Score = 39.0 bits (91), Expect = 0.001
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 1774 VYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
++W+ K+I + +TL DN TL I+ V+D+G++ C+A N AGEA EL +
Sbjct: 18 IHWISPDGKLISN-SSRTLVYDN-GTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74
Score = 37.9 bits (88), Expect = 0.003
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 4 RADPNLKIEW-FKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAV 62
R DP I W +G +S SR +D G TL I D+ +TC A+N GEA
Sbjct: 11 RGDPEPAIHWISPDGKLISNSSRTLV-YDNG--TLDILITTVKDTGSFTCIASNAAGEAT 67
Query: 63 STCTLKI 69
+T L I
Sbjct: 68 ATVELHI 74
Score = 35.5 bits (82), Expect = 0.022
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 368 LEILGTKIEDTGVYTCRATNKWGQAEISVNL 398
L+IL T ++DTG +TC A+N G+A +V L
Sbjct: 42 LDILITTVKDTGSFTCIASNAAGEATATVEL 72
Score = 33.6 bits (77), Expect = 0.084
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 1665 GDPLPTIKW-FREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 1723
GDP P I W + I++S ++ T ILI ++D+G F IA N G+A
Sbjct: 12 GDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITT---VKDTGSFTCIASNAAGEATA 68
Query: 1724 SANLVV 1729
+ L +
Sbjct: 69 TVELHI 74
Score = 32.8 bits (75), Expect = 0.16
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 533 DPTMRIDWFF-NGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTA 588
DP I W +G+ + SR VYD G +LD+ +D+G + C A+N G A
Sbjct: 13 DPEPAIHWISPDGKLISNSSRT-LVYDNG--TLDILITTVKDTGSFTCIASNAAGEA 66
Score = 32.8 bits (75), Expect = 0.16
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 1083 DPTMRIDWFF-NGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTA 1138
DP I W +G+ + SR VYD G +LD+ +D+G + C A+N G A
Sbjct: 13 DPEPAIHWISPDGKLISNSSRT-LVYDNG--TLDILITTVKDTGSFTCIASNAAGEA 66
>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1.
Ig5_Contactin-1: fifth Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 41.9 bits (98), Expect = 1e-04
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEA 61
+P+A P K W K L SRI S +D G +L I ++ D YTC A N G+A
Sbjct: 9 KPKAAPKPKFSWSKGTELLVNNSRI-SIWDDG--SLEILNITKLDEGSYTCFAENNRGKA 65
Query: 62 VSTCTLKI 69
ST L +
Sbjct: 66 NSTGVLSV 73
Score = 39.2 bits (91), Expect = 0.001
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 937 ECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNK 996
EC+ P P W + L SRI +D LEI ++ D G YTC A N
Sbjct: 7 ECK--PKAAPKPKFSWSKGTELLVNNSRISIWDDGS---LEILNITKLDEGSYTCFAENN 61
Query: 997 HGEATTSCKLTV 1008
G+A ++ L+V
Sbjct: 62 RGKANSTGVLSV 73
Score = 33.8 bits (77), Expect = 0.078
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 520 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYIC 579
G+V +C+ PK+ P + W SR+ +++D G SL++ + D G Y C
Sbjct: 2 GRVIIECK--PKAAPKPKFSWSKGTELLVNNSRI-SIWDDG--SLEILNITKLDEGSYTC 56
Query: 580 RATNKWGTA 588
A N G A
Sbjct: 57 FAENNRGKA 65
Score = 33.8 bits (77), Expect = 0.078
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 1070 GKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYIC 1129
G+V +C+ PK+ P + W SR+ +++D G SL++ + D G Y C
Sbjct: 2 GRVIIECK--PKAAPKPKFSWSKGTELLVNNSRI-SIWDDG--SLEILNITKLDEGSYTC 56
Query: 1130 RATNKWGTA 1138
A N G A
Sbjct: 57 FAENNRGKA 65
Score = 32.3 bits (73), Expect = 0.25
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 733 PTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAV 792
P PK K W + + SR + D LEI + D G Y+C A N+ G+A
Sbjct: 10 PKAAPKPKFSWSKGTELLVNNSRISIWDDGS---LEILNITKLDEGSYTCFAENNRGKAN 66
Query: 793 TSASMKV 799
++ + V
Sbjct: 67 STGVLSV 73
Score = 31.5 bits (71), Expect = 0.51
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 239 TEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
TE VNN + + +L+I+ D G YT A N++G A ++G L
Sbjct: 24 TELLVNNSRI---------SIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVL 71
>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain
of a follistatin-like molecule encoded by the Mahya gene
and similar proteins. Ig2_Follistatin_like: domain
similar to the second immunoglobulin (Ig)-like domain
found in a follistatin-like molecule encoded by the
CNS-related Mahya gene. Mahya genes have been retained in
certain Bilaterian branches during evolution. They are
conserved in Hymenoptera and Deuterostomes, but are
absent from other metazoan species such as fruit fly and
nematode. Mahya proteins are secretory, with a
follistatin-like domain (Kazal-type serine/threonine
protease inhibitor domain and EF-hand calcium-binding
domain), two Ig-like domains, and a novel C-terminal
domain. Mahya may be involved in learning and memory and
in processing of sensory information in Hymenoptera and
vertebrates. Follistatin is a secreted, multidomain
protein that binds activins with high affinity and
antagonizes their signaling.
Length = 76
Score = 41.8 bits (98), Expect = 1e-04
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 1664 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 1723
+G PLP + W + IT Q+ + S L + V ED+G + IA+N G +
Sbjct: 8 EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDED 67
Query: 1724 SANLVVEE 1731
++L VE+
Sbjct: 68 ISSLFVED 75
Score = 41.1 bits (96), Expect = 3e-04
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 1774 VYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
+ WLKNG I P + + N L I ED+GAY C+A N AG + L V+
Sbjct: 15 LTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74
Score = 36.1 bits (83), Expect = 0.015
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCT 66
P ++ W KNG+ ++ + T L I+++R +D+ YTC A N G +
Sbjct: 11 PLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISS 70
Query: 67 LKIED 71
L +ED
Sbjct: 71 LFVED 75
Score = 31.8 bits (72), Expect = 0.40
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 1453 GDPNMKVEWFLNGKPLPHK--NRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDE 1510
G P ++ W NG + K + I + + ++ V ED+G Y C A N G+DE
Sbjct: 9 GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISN--VRYEDTGAYTCIAKNEAGVDE 66
>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor. Ig2_FGFR:
second immunoglobulin (Ig)-like domain of fibroblast
growth factor (FGF) receptor. FGF receptors bind FGF
signaling polypeptides. FGFs participate in multiple
processes such as morphogenesis, development, and
angiogenesis. FGFs bind to four FGF receptor tyrosine
kinases (FGFR1, -2, -3, -4). Receptor diversity is
controlled by alternative splicing producing splice
variants with different ligand binding characteristics
and different expression patterns. FGFRs have an
extracellular region comprised of three IG-like domains,
a single transmembrane helix, and an intracellular
tyrosine kinase domain. Ligand binding and specificity
reside in the Ig-like domains 2 and 3, and the linker
region that connects these two. FGFR activation and
signaling depend on FGF-induced dimerization, a process
involving cell surface heparin or heparin sulfate
proteoglycans.
Length = 85
Score = 41.8 bits (98), Expect = 2e-04
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFI--SLDMDYVYARD 573
VP A V F C PTMR W NG+ F R+ Y SL M+ V D
Sbjct: 6 VPAANTVKFRCPAAGNPTPTMR--WLKNGKEFKQEHRIGG-YKVRNQHWSLIMESVVPSD 62
Query: 574 SGEYICRATNKWGT 587
G Y C N++G+
Sbjct: 63 KGNYTCVVENEYGS 76
Score = 41.8 bits (98), Expect = 2e-04
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 1066 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFI--SLDMDYVYARD 1123
VP A V F C PTMR W NG+ F R+ Y SL M+ V D
Sbjct: 6 VPAANTVKFRCPAAGNPTPTMR--WLKNGKEFKQEHRIGG-YKVRNQHWSLIMESVVPSD 62
Query: 1124 SGEYICRATNKWGT 1137
G Y C N++G+
Sbjct: 63 KGNYTCVVENEYGS 76
Score = 39.8 bits (93), Expect = 7e-04
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 1442 STKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGW------VYPEDS 1495
+ KF C A G+P + W NGK ++R GY N W V P D
Sbjct: 11 TVKFRCPAA--GNPTPTMRWLKNGKEFKQEHRIG-----GYKVRNQHWSLIMESVVPSDK 63
Query: 1496 GEYLCRATNLYG 1507
G Y C N YG
Sbjct: 64 GNYTCVVENEYG 75
Score = 37.9 bits (88), Expect = 0.004
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 1757 GQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVV-EDSGAYEC 1815
+F + + WLKNGK+ + R + N LI+E+VV D G Y C
Sbjct: 9 ANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 68
Query: 1816 VAMNNAGEARCEAELVV 1832
V N G L V
Sbjct: 69 VVENEYGSINHTYHLDV 85
Score = 34.5 bits (79), Expect = 0.068
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 946 PSMTVEWFHNGKALSAGSRI---KTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATT 1002
P+ T+ W NGK RI K N +I+E V D G YTC N++G
Sbjct: 22 PTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVENEYGSINH 79
Query: 1003 SCKLTV 1008
+ L V
Sbjct: 80 TYHLDV 85
Score = 34.5 bits (79), Expect = 0.073
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 336 GDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 390
G+ T T+ +L NGK + HRI + + +++E D G YTC N++G
Sbjct: 20 GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME--SVVPSDKGNYTCVVENEYG 75
Score = 33.7 bits (77), Expect = 0.10
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 737 PKLKVEWFWNGKPMKT-----GSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYG 789
P + W NGK K G + R +I+E V P D G Y+C N+YG
Sbjct: 22 PTPTMRWLKNGKEFKQEHRIGGYKVRN--QHWSLIME--SVVPSDKGNYTCVVENEYG 75
Score = 32.1 bits (73), Expect = 0.48
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRS-TFDFGLVTLSINSLRADDSAIYTCKATNLLGEAV 62
+P + W KNG RI +L + S+ D YTC N G
Sbjct: 19 AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 78
Query: 63 STCTLKI 69
T L +
Sbjct: 79 HTYHLDV 85
Score = 31.4 bits (71), Expect = 0.88
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 1658 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKS---ILIMRQVFMEDSGVFAVIA 1714
+F G+P PT++W + + +I + ++ LIM V D G + +
Sbjct: 13 KFRCPAAGNPTPTMRWLKNGKEF--KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 70
Query: 1715 ENRGG 1719
EN G
Sbjct: 71 ENEYG 75
>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac
myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5
immunoglobulin (Ig) domain of cardiac myosin binding
protein C (MyBP-C). MyBP_C consists of repeated domains,
Ig and fibronectin type 3, and various linkers. Three
isoforms of MYBP_C exist and are included in this group:
cardiac(c), and fast and slow skeletal muscle (s) MyBP_C.
cMYBP_C has insertions between and inside domains and an
additional cardiac-specific Ig domain at the N-terminus.
For cMYBP_C an interaction has been demonstrated between
this C5 domain and the Ig C8 domain.
Length = 86
Score = 41.4 bits (97), Expect = 2e-04
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 1658 RFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTK--SILIMRQVFMEDSGVFAVIAE 1715
R +V G+P PT+ W R D T + + ++ S K S ++ ED GV+ +
Sbjct: 14 RLDVPISGEPAPTVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVT 72
Query: 1716 NRGGKAKCSANLVVE 1730
N G+ A+L V+
Sbjct: 73 NPVGEDH--ASLFVK 85
Score = 32.9 bits (75), Expect = 0.24
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 1 VEPRADPNLKIEWFKNGVPLSLGS---RIRSTFDFGLVTLSINSLRADDSAIYTCKATNL 57
V +P + W + + R+ S D L + I +D +YT TN
Sbjct: 17 VPISGEPAPTVTWSRGDKAFTETEGRVRVESYKD--LSSFVIEGAEREDEGVYTITVTNP 74
Query: 58 LGEAVSTCTLKI 69
+GE ++ +K+
Sbjct: 75 VGEDHASLFVKV 86
Score = 32.5 bits (74), Expect = 0.31
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 943 TNDPSMTVEWFHNGKALSAGS---RIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGE 999
+ +P+ TV W KA + R+++ D ++E + D G+YT TN GE
Sbjct: 20 SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAE--REDEGVYTITVTNPVGE 77
Query: 1000 ATTSCKLTV 1008
S + V
Sbjct: 78 DHASLFVKV 86
Score = 29.0 bits (65), Expect = 5.2
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 1753 VINVGQLARFDAKISATKPLDVYWLKNGKKIIP-DIRYKTLEEDNLFTLLIIEAVVEDSG 1811
V+ G R D IS V W + K + R + +L + +I A ED G
Sbjct: 6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEG 65
Query: 1812 AYECVAMNNAGEA 1824
Y N GE
Sbjct: 66 VYTITVTNPVGED 78
>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of
myotilin. Ig_Myotilin_C: C-terminal immunoglobulin
(Ig)-like domain of myotilin. Mytolin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to the latter family contain multiple Ig-like domains and
function as scaffolds, modulating actin cytoskeleton.
Myotilin is most abundant in skeletal and cardiac muscle,
and is involved in maintaining sarcomere integrity. It
binds to alpha-actinin, filamin and actin. Mutations in
myotilin lead to muscle disorders.
Length = 75
Score = 41.1 bits (96), Expect = 2e-04
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 1760 ARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNL--FTLLIIEAVVEDSGAYECVA 1817
+ + +ISA P ++W +N + + + +L +DN TLLI +D+G Y A
Sbjct: 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA 60
Query: 1818 MNNAGEARCEAELVV 1832
+N AG A C A L V
Sbjct: 61 VNEAGVATCHARLDV 75
Score = 33.0 bits (75), Expect = 0.17
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 934 AHFECRLTPTNDPSMTVEWFHNGKALSAGS-RIKTIND-FGFVILEINDVYLRDSGLYTC 991
EC+++ P + W N + + + RI D G V L I +V +D+G YT
Sbjct: 1 VKLECQISAIPPPKIF--WKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTV 58
Query: 992 KATNKHGEATTSCKLTV 1008
A N+ G AT +L V
Sbjct: 59 SAVNEAGVATCHARLDV 75
>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_1: subgroup of the immunoglobulin (Ig) domain found in
the Ig superfamily. The Ig superfamily is a heterogenous
group of proteins, built on a common fold comprised of a
sandwich of two beta sheets. Members of the Ig
superfamily are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 75
Score = 40.7 bits (95), Expect = 3e-04
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 1657 ARFEVEFDGDPLPTIKWFRE---DFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVI 1713
AR E G P P I W ++ DFP ++ + ++H + + V +ED+GV++
Sbjct: 1 ARLECAATGHPTPQIAWQKDGGTDFP--AARERRMHVMPEDDVFFIVDVKIEDTGVYSCT 58
Query: 1714 AENRGGKAKCSANLVV 1729
A+N G +A L V
Sbjct: 59 AQNTAGSISANATLTV 74
Score = 37.2 bits (86), Expect = 0.006
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 1776 WLKNGKKIIP---DIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
W K+G P + R + ED++F I++ +ED+G Y C A N AG A L V
Sbjct: 17 WQKDGGTDFPAARERRMHVMPEDDVF--FIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74
Score = 34.5 bits (79), Expect = 0.053
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 934 AHFECRLTPTNDPSMTVEWFHNGKALSAGSR-----IKTINDFGFVILEINDVYLRDSGL 988
A EC T P+ + W +G +R + +D F I DV + D+G+
Sbjct: 1 ARLEC--AATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFF----IVDVKIEDTGV 54
Query: 989 YTCKATNKHGEATTSCKLTV 1008
Y+C A N G + + LTV
Sbjct: 55 YSCTAQNTAGSISANATLTV 74
Score = 32.6 bits (74), Expect = 0.22
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 7 PNLKIEWFKNG---VPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
P +I W K+G P + R+ + I ++ +D+ +Y+C A N G +
Sbjct: 11 PTPQIAWQKDGGTDFPAARERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISA 68
Query: 64 TCTLKI 69
TL +
Sbjct: 69 NATLTV 74
Score = 32.6 bits (74), Expect = 0.25
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 367 VLEILGTKIEDTGVYTCRATNKWGQAEISVN 397
V I+ KIEDTGVY+C A N G IS N
Sbjct: 41 VFFIVDVKIEDTGVYSCTAQNTAGS--ISAN 69
Score = 30.7 bits (69), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 267 IVGAYAEDSGIYTVKATNSKGSATTSGTLKCL 298
IV ED+G+Y+ A N+ GS + + TL L
Sbjct: 44 IVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75
>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein
tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7:
domain similar to the second immunoglobulin (Ig)-like
domain in protein tyrosine kinase (PTK) 7, also known as
CCK4. PTK7 is a subfamily of the receptor protein
tyrosine kinase family, and is referred to as an
RPTK-like molecule. RPTKs transduce extracellular signals
across the cell membrane, and play important roles in
regulating cell proliferation, migration, and
differentiation. PTK7 is organized as an extracellular
portion having seven Ig-like domains, a single
transmembrane region, and a cytoplasmic tyrosine
kinase-like domain. PTK7 is considered a pseudokinase as
it has several unusual residues in some of the highly
conserved tyrosine kinase (TK) motifs; it is predicted to
lack TK activity. PTK7 may function as a cell-adhesion
molecule. PTK7 mRNA is expressed at high levels in
placenta, melanocytes, liver, lung, pancreas, and kidney.
PTK7 is overexpressed in several cancers, including
melanoma and colon cancer lines.
Length = 77
Score = 40.7 bits (95), Expect = 4e-04
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 1664 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKS-ILIMRQVFMEDSGVFAVIAENRGGKAK 1722
DG P PT +WFR+ P+ S ++ S+K L +R +DSG++ A N G
Sbjct: 8 DGHPRPTYQWFRDGTPL--SDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVC 65
Query: 1723 CSANL 1727
S N
Sbjct: 66 SSQNF 70
Score = 35.7 bits (82), Expect = 0.023
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 17/69 (24%)
Query: 12 EWFKNGVPL-------SLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVST 64
+WF++G PL S+ S+ R TL++ S DDS +Y C A N G S+
Sbjct: 16 QWFRDGTPLSDGQGNYSVSSKER--------TLTLRSAGPDDSGLYYCCAHNAFGSVCSS 67
Query: 65 --CTLKIED 71
TL I D
Sbjct: 68 QNFTLSIID 76
Score = 33.7 bits (77), Expect = 0.11
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 737 PKLKVEWFWNGKPMKTG-------SRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYG 789
P+ +WF +G P+ G S+ RT L + P+D G Y C A+N +G
Sbjct: 11 PRPTYQWFRDGTPLSDGQGNYSVSSKERT--------LTLRSAGPDDSGLYYCCAHNAFG 62
Query: 790 EAVTS 794
+S
Sbjct: 63 SVCSS 67
Score = 30.7 bits (69), Expect = 1.2
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSATTS 292
P +WF + PL G + L + A +DSG+Y A N+ GS +S
Sbjct: 13 PTYQWFRDGTPLSDGQG-NYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSS 67
>gnl|CDD|219093 pfam06582, DUF1136, Repeat of unknown function (DUF1136). This
family consists of several eukaryote specific repeats of
unknown function. This repeat seems to always be found
with pfam00047.
Length = 29
Score = 38.2 bits (90), Expect = 6e-04
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 667 LILESQLPEGMEGGLEKIQTLEDAAHLRRTETA 699
+IL++Q PE LEKIQ LED + +R E
Sbjct: 1 IILDTQHPES----LEKIQELEDPSRYQRPEEP 29
Score = 36.7 bits (86), Expect = 0.002
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 1523 IIYESQLPKGMKSIEKIREMEASWQHTPEQ 1552
II ++Q P+ + EKI+E+E ++ +
Sbjct: 1 IILDTQHPESL---EKIQELEDPSRYQRPE 27
Score = 32.5 bits (75), Expect = 0.092
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 860 IILESQLPKGMEGTIDKIAELEGY 883
IIL++Q P+ +E KI ELE
Sbjct: 1 IILDTQHPESLE----KIQELEDP 20
Score = 29.0 bits (66), Expect = 1.6
Identities = 9/20 (45%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Query: 1152 IVTESQLPDSMSAEKLKELE 1171
I+ ++Q P+S+ EK++ELE
Sbjct: 1 IILDTQHPESL--EKIQELE 18
Score = 29.0 bits (66), Expect = 1.6
Identities = 9/20 (45%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Query: 1228 IVTESQLPDSMSAEKLKELE 1247
I+ ++Q P+S+ EK++ELE
Sbjct: 1 IILDTQHPESL--EKIQELE 18
>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain. This domain contains
immunoglobulin-like domains.
Length = 80
Score = 40.1 bits (94), Expect = 6e-04
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 922 TPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDV 981
TP+ + E C P+ T W+ +G LS+ F ++
Sbjct: 5 TPSPTVVFEGEDVTLTCSAPGNPPPNYT--WYKDGVPLSSSQNG-------FFTPNVS-- 53
Query: 982 YLRDSGLYTCKATNKH-GEATTSCKLTV 1008
DSG YTC A+N G+ + LTV
Sbjct: 54 -AEDSGTYTCVASNGGGGKTSNPVTLTV 80
Score = 36.3 bits (84), Expect = 0.012
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATN 56
+P W+K+GVPLS ++ A+DS YTC A+N
Sbjct: 25 GNPPPNYTWYKDGVPLSSSQNG----------FFTPNVSAEDSGTYTCVASN 66
Score = 35.5 bits (82), Expect = 0.027
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 706 APVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFV 765
PV T + + EGE+ +P W+ +G P+ + GF
Sbjct: 1 KPVLTPSPTVV---FEGEDVTLTCSAP--GNPPPNYTWYKDGVPLSSSQN-------GFF 48
Query: 766 ILEISPVYPEDCGQYSCRAYNDYGEAVTSASMKVQ 800
+S ED G Y+C A N G TS + +
Sbjct: 49 TPNVSA---EDSGTYTCVASNGGGG-KTSNPVTLT 79
Score = 35.1 bits (81), Expect = 0.038
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 1750 SSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVED 1809
S V+ G+ P + W K+G + ++ FT + ED
Sbjct: 7 SPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSS-------QNGFFTPNV---SAED 56
Query: 1810 SGAYECVAMN-NAGEARCEAELVV 1832
SG Y CVA N G+ L V
Sbjct: 57 SGTYTCVASNGGGGKTSNPVTLTV 80
Score = 33.2 bits (76), Expect = 0.14
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 26/72 (36%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNGKPI-------FHKNRVKMVSDFGFVVMDIAYVQS 476
G+ C+ +P W+ +G P+ F N V +
Sbjct: 14 GEDVTLTCSAP--GNPPPNYTWYKDGVPLSSSQNGFFTPN-----------------VSA 54
Query: 477 HDSGEYVCRAWN 488
DSG Y C A N
Sbjct: 55 EDSGTYTCVASN 66
Score = 29.3 bits (66), Expect = 3.5
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 14/54 (25%)
Query: 1453 GDPNMKVEWFLNGKPLP--HKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATN 1504
G+P W+ +G PL F P V EDSG Y C A+N
Sbjct: 25 GNPPPNYTWYKDGVPLSSSQNGFFTPN------------VSAEDSGTYTCVASN 66
>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar
proteins. Ig5_NCAM-1 like: domain similar to the fifth
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in the
development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular extensions.
The extracellular portion of NCAM has five N-terminal
Ig-like domains and two fibronectin type III domains. The
double zipper adhesion complex model for NCAM homophilic
binding involves Ig1, Ig2, and Ig3. By this model, Ig1
and Ig2 mediate dimerization of NCAM molecules situated
on the same cell surface (cis interactions), and Ig3
domains mediate interactions between NCAM molecules
expressed on the surface of opposing cells (trans
interactions), through binding to the Ig1 and Ig2
domains. The adhesive ability of NCAM is modulated by the
addition of polysialic acid chains to the fifth Ig-like
domain. Also included in this group is NCAM-2 (also known
as OCAM/mamFas II and RNCAM) NCAM-2 is differentially
expressed in the developing and mature olfactory
epithelium (OE).
Length = 96
Score = 40.2 bits (94), Expect = 7e-04
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 1651 AFEQDQARFEVEFDGDPLPTIKWFREDFPITS---SPDFQIHTFST--KSILIMRQVFME 1705
A E +Q E +GDP+P I W R + S D +I S L ++ V +
Sbjct: 13 AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLT 72
Query: 1706 DSGVFAVIAENRGG 1719
D+G + A NR G
Sbjct: 73 DAGRYDCEASNRIG 86
Score = 36.3 bits (84), Expect = 0.018
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 518 EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGS-----RVKTVYDFGFISLDMDYVYAR 572
E ++ C E + DP I W R F+ G R+ SL + V
Sbjct: 15 ELEQITLTC--EAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLT 72
Query: 573 DSGEYICRATNKWG 586
D+G Y C A+N+ G
Sbjct: 73 DAGRYDCEASNRIG 86
Score = 36.3 bits (84), Expect = 0.018
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 1068 EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGS-----RVKTVYDFGFISLDMDYVYAR 1122
E ++ C E + DP I W R F+ G R+ SL + V
Sbjct: 15 ELEQITLTC--EAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLT 72
Query: 1123 DSGEYICRATNKWG 1136
D+G Y C A+N+ G
Sbjct: 73 DAGRYDCEASNRIG 86
>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of
interleukin-1 receptor (IL1R) and similar proteins.
Ig2_IL1R_like: domain similar to the second
immunoglobulin (Ig)-like domain of interleukin-1 receptor
(IL1R). IL-1 alpha and IL-1 beta are cytokines which
participate in the regulation of inflammation, immune
responses, and hematopoiesis. These cytokines bind to the
IL-1 receptor type 1 (IL1R1), which is activated on
additional association with an accessory protein, IL1RAP.
IL-1 also binds a second receptor designated type II
(IL1R2). Mature IL1R1 consists of three IG-like domains,
a transmembrane domain, and a large cytoplasmic domain.
Mature IL1R2 is organized similarly except that it has a
short cytoplasmic domain. The latter does not initiate
signal transduction. A naturally occurring cytokine
IL-1RA (IL-1 receptor antagonist) is widely expressed and
binds to IL-1 receptors, inhibiting the binding of IL-1
alpha and IL-1 beta. This group also contains ILIR-like 1
(IL1R1L) which maps to the same chromosomal location as
IL1R1 and IL1R2.
Length = 92
Score = 40.0 bits (94), Expect = 8e-04
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 943 TNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKAT----NKHG 998
+ V+W+ + K L + L I +V D+G YTCK T K
Sbjct: 25 NENTLPPVQWYKDCKLLEGDRKRFVKGSK----LLIQNVTEEDAGNYTCKLTFTHNGKQY 80
Query: 999 EATTSCKLTVKG 1010
T + LTV
Sbjct: 81 NVTRTISLTVTE 92
Score = 33.4 bits (77), Expect = 0.18
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 143 GKLLC-TLTPVNDPE--LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 199
GK++C L + V+W+ + K + + + I V D+G Y
Sbjct: 13 GKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLL----IQNVTEEDAGNYT 68
Query: 200 CQ 201
C+
Sbjct: 69 CK 70
Score = 33.1 bits (76), Expect = 0.25
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 8 NLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKAT 55
++W+K+ L G R R L+ I ++ +D+ YTCK T
Sbjct: 29 LPPVQWYKDCKLL-EGDRKRFVKGSKLL---IQNVTEEDAGNYTCKLT 72
Score = 30.4 bits (69), Expect = 2.1
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 442 KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 486
V+W+ + K + + + I V D+G Y C+
Sbjct: 31 PVQWYKDCKLLEGDRKRFVKGSKLL----IQNVTEEDAGNYTCKL 71
>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of
palladin. Ig_Palladin_C: C-terminal immunoglobulin
(Ig)-like domain of palladin. Palladin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to this family contain multiple Ig-like domains and
function as scaffolds, modulating actin cytoskeleton.
Palladin binds to alpha-actinin ezrin,
vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP,
mDia interacting protein), and Src. Palladin also binds
F-actin directly, via its Ig3 domain. Palladin is
expressed as several alternatively spliced isoforms,
having various combinations of Ig-like domains, in a
cell-type-specific manner. It has been suggested that
palladin's different Ig-like domains may be specialized
for distinct functions.
Length = 75
Score = 39.3 bits (91), Expect = 9e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1658 RFEVEFDGDPLPTIKWFREDFPITSSPD-FQIHTFSTKSI-LIMRQVFMEDSGVFAVIAE 1715
R E G P P I W +E+ +T + D +H + I L+++ ED+G + V A+
Sbjct: 2 RLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAK 61
Query: 1716 NRGGKAKCSANLVV 1729
N G C+A L V
Sbjct: 62 NEAGIVSCTARLDV 75
Score = 38.9 bits (90), Expect = 0.001
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 1761 RFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDN--LFTLLIIEAVVEDSGAYECVAM 1818
R + ++S ++W K + + + ++ +DN LLI A ED+G Y A
Sbjct: 2 RLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAK 61
Query: 1819 NNAGEARCEAELVV 1832
N AG C A L V
Sbjct: 62 NEAGIVSCTARLDV 75
Score = 33.9 bits (77), Expect = 0.076
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 241 WFVNNKPLPAGAKFKTTH--DFGYVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
W N+ L + H + GY+ L I GA ED+G YTV A N G + + L
Sbjct: 17 WKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARL 73
Score = 30.4 bits (68), Expect = 1.6
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGS-RIKTIND-FGFVILEINDVYLRDSGLYTCKA 993
ECR++ P + W ++L+ + R+ D G++ L I D+G YT A
Sbjct: 3 LECRVS--GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60
Query: 994 TNKHGEATTSCKLTV 1008
N+ G + + +L V
Sbjct: 61 KNEAGIVSCTARLDV 75
>gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found
in neuregulin (NRG)-1. Ig_Pro_neuregulin-1:
immunoglobulin (Ig)-like domain found in neuregulin
(NRG)-1. There are many NRG-1 isoforms which arise from
the alternative splicing of mRNA. NRG-1 belongs to the
neuregulin gene family, which is comprised of four genes.
This group represents NRG-1. NRGs are signaling
molecules, which participate in cell-cell interactions in
the nervous system, breast, and heart, and other organ
systems, and are implicated in the pathology of diseases
including schizophrenia, multiple sclerosis, and breast
cancer. The NRG-1 protein binds to and activates the
tyrosine kinases receptors ErbB3 and ErbB4, initiating
signaling cascades. NRG-1 has multiple functions; for
example, in the brain it regulates various processes such
as radial glia formation and neuronal migration,
dendritic development, and expression of
neurotransmitters receptors; in the peripheral nervous
system NRG-1 regulates processes such as target cell
differentiation, and Schwann cell survival.
Length = 76
Score = 39.2 bits (91), Expect = 0.001
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 941 TPTNDPSMTVEWFHNGKALSAGSR----IKTINDFGFVILEINDVYLRDSGLYTCKATNK 996
T + PS+ +WF NGK + A ++ IK L+I+ L D+G Y C ++K
Sbjct: 7 TVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSK 66
Query: 997 HGEATTS 1003
G + +
Sbjct: 67 LGNDSVT 73
Score = 36.1 bits (83), Expect = 0.012
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 439 PELKVEWFHNGKPIFHKNR----VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 488
P L+ +WF NGK I KN+ +K+ + I+ D+GEY C +
Sbjct: 12 PSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSS 65
Score = 35.7 bits (82), Expect = 0.017
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 1455 PNMKVEWFLNGKPLPHKNR----FNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDE 1510
P+++ +WF NGK + KN+ + D+GEY C ++ G D
Sbjct: 12 PSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71
Query: 1511 TRA 1513
A
Sbjct: 72 VTA 74
Score = 35.0 bits (80), Expect = 0.035
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 155 PELKVEWFHNGKPIFHKNR----VKMVSDFGFVVMDIAYVQSHDSGEYVCQWFVNNK 207
P L+ +WF NGK I KN+ +K+ + I+ D+GEY C V++K
Sbjct: 12 PSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCM--VSSK 66
Score = 33.1 bits (75), Expect = 0.15
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 534 PTMRIDWFFNGRPFATGSRVKTVYDF----GFISLDMDYVYARDSGEYICRATNKWGTAM 589
P++R WF NG+ ++ L + D+GEY C ++K G
Sbjct: 12 PSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71
Query: 590 TKAKV 594
A V
Sbjct: 72 VTANV 76
Score = 33.1 bits (75), Expect = 0.15
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 1084 PTMRIDWFFNGRPFATGSRVKTVYDF----GFISLDMDYVYARDSGEYICRATNKWGTAM 1139
P++R WF NG+ ++ L + D+GEY C ++K G
Sbjct: 12 PSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71
Query: 1140 TKAKV 1144
A V
Sbjct: 72 VTANV 76
Score = 30.7 bits (69), Expect = 1.2
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 732 TPTDDPKLKVEWFWNGKPM----KTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYND 787
T ++ P L+ +WF NGK + K ++ + L+IS D G+Y C +
Sbjct: 7 TVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSK 66
Query: 788 YGEAVTSASM 797
G +A++
Sbjct: 67 LGNDSVTANV 76
Score = 29.2 bits (65), Expect = 3.3
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDF----GLVTLSINSLRADDSAIYTCKATNLLG 59
P+L+ +WFKNG + ++ + L I+ D+ Y C ++ LG
Sbjct: 12 PSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLG 68
>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of
fibroblast growth factor receptor (FGFR). Ig1_FGFR: The
first immunoglobulin (Ig)-like domain of fibroblast
growth factor receptor (FGFR). Fibroblast growth factors
(FGFs) participate in morphogenesis, development,
angiogenesis, and wound healing. These FGF-stimulated
processes are mediated by four FGFR tyrosine kinases
(FGRF1-4). FGFRs are comprised of an extracellular
portion consisting of three Ig-like domains, a
transmembrane helix, and a cytoplasmic portion having
protein tyrosine kinase activity. The highly conserved
Ig-like domains 2 and 3, and the linker region between D2
and D3 define a general binding site for all FGFs.
Length = 79
Score = 38.7 bits (90), Expect = 0.001
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 930 ESTLAH------FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYL 983
ES AH CRL D ++ W +G L +R + + ++I D
Sbjct: 2 ESYSAHPGDLLQLRCRL---RDDVQSINWTKDGVQLGENNRTRITGEE----VQIKDAVP 54
Query: 984 RDSGLYTCKATNKHGEATTSCKLTV 1008
RDSGLY C ++ G TT + V
Sbjct: 55 RDSGLYACVTSSPSGSDTTYFSVNV 79
Score = 30.6 bits (69), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 1776 WLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVA 1817
W K+G ++ + R + E+ + I +AV DSG Y CV
Sbjct: 27 WTKDGVQLGENNRTRITGEE----VQIKDAVPRDSGLYACVT 64
Score = 30.2 bits (68), Expect = 1.5
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 11 IEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCTLKI 69
I W K+GV L +R R T + + I DS +Y C ++ G + ++ +
Sbjct: 25 INWTKDGVQLGENNRTRITGEE----VQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79
>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain
found in Perlecan and similar proteins.
Ig3_Perlecan_like: domain similar to the third
immunoglobulin (Ig)-like domain found in Perlecan.
Perlecan is a large multi-domain heparin sulfate
proteoglycan, important in tissue development and
organogenesis. Perlecan can be represented as 5 major
portions; its fourth major portion (domain IV) is a
tandem repeat of immunoglobulin-like domains (Ig2-Ig15),
which can vary in size due to alternative splicing.
Perlecan binds many cellular and extracellular ligands.
Its domain IV region has many binding sites. Some of
these have been mapped at the level of individual Ig-like
domains, including a site restricted to the Ig5 domain
for heparin/sulfatide, a site restricted to the Ig3
domain for nidogen-1 and nidogen-2, a site restricted to
Ig4-5 for fibronectin, and sites restricted to Ig2 and to
Ig13-15 for fibulin-2.
Length = 85
Score = 39.1 bits (91), Expect = 0.002
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 1445 FECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATN 1504
F C+ A P + W G LP + DF + + V D+G Y+C +N
Sbjct: 21 FICR-AKSKSPAYTLVWTRVGGGLPSRAM-----DFNGI-LTIRNVQLSDAGTYVCTGSN 73
Query: 1505 LYGMDETRAIL 1515
+ DE A L
Sbjct: 74 MLDTDEATATL 84
Score = 38.3 bits (89), Expect = 0.003
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 710 TVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEI 769
TV ++R G + F R + P + W G + + + DF IL I
Sbjct: 4 TVEEPRSQEVRPGADVSFICR-AKSKSPAYTLVWTRVGGGLPSRAM-----DFNG-ILTI 56
Query: 770 SPVYPEDCGQYSCRAYN 786
V D G Y C N
Sbjct: 57 RNVQLSDAGTYVCTGSN 73
Score = 36.8 bits (85), Expect = 0.010
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995
F CR + P+ T+ W G L + + DF IL I +V L D+G Y C +N
Sbjct: 21 FICR-AKSKSPAYTLVWTRVGGGLPSRAM-----DFNG-ILTIRNVQLSDAGTYVCTGSN 73
Score = 34.8 bits (80), Expect = 0.041
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 1055 VFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISL 1114
V + Q+ V V F CR + KS P + W G + + DF I L
Sbjct: 5 VEEPRSQE---VRPGADVSFICRAKSKS-PAYTLVWTRVGGGLPSRAM-----DFNGI-L 54
Query: 1115 DMDYVYARDSGEYICRATNKWGTAMTKAKVI 1145
+ V D+G Y+C +N T A +
Sbjct: 55 TIRNVQLSDAGTYVCTGSNMLDTDEATATLY 85
Score = 34.1 bits (78), Expect = 0.083
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 516 VPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSG 575
V V F CR + KS P + W G + + DF I L + V D+G
Sbjct: 13 VRPGADVSFICRAKSKS-PAYTLVWTRVGGGLPSRAM-----DFNGI-LTIRNVQLSDAG 65
Query: 576 EYICRATNKWGTAMTKAKVI 595
Y+C +N T A +
Sbjct: 66 TYVCTGSNMLDTDEATATLY 85
Score = 32.5 bits (74), Expect = 0.34
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 1666 DPLPTIKWFREDFPITSSP-DFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 1724
P T+ W R + S DF IL +R V + D+G + N + +
Sbjct: 29 SPAYTLVWTRVGGGLPSRAMDFN-------GILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81
Query: 1725 ANL 1727
A L
Sbjct: 82 ATL 84
Score = 30.6 bits (69), Expect = 1.5
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 421 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSG 480
++ G F C P + W G + + DF + + I VQ D+G
Sbjct: 13 VRPGADVSFICR-AKSKSPAYTLVWTRVGGGLPSRAM-----DFNGI-LTIRNVQLSDAG 65
Query: 481 EYVCRAWNNF 490
YVC N
Sbjct: 66 TYVCTGSNML 75
>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain. This family contains
immunoglobulin-like domains.
Length = 74
Score = 38.9 bits (90), Expect = 0.002
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 920 LTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEIN 979
+T ++ C P T+ W+ NG + + L ++
Sbjct: 4 ITVSPSPSVTSGGGVTLTCS-AEGGPPPPTISWYRNGSISGGSGGLGSSG----STLTLS 58
Query: 980 DVYLRDSGLYTCKATN 995
V DSG YTC A+N
Sbjct: 59 SVTSEDSGTYTCVASN 74
Score = 35.4 bits (81), Expect = 0.019
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATN 56
P I W++NG GS + TL+++S+ ++DS YTC A+N
Sbjct: 29 PPPTISWYRNGSISG-GSGGLGSSGS---TLTLSSVTSEDSGTYTCVASN 74
Score = 34.7 bits (79), Expect = 0.038
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 1770 KPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819
P + W +NG + TL + EDSG Y CVA N
Sbjct: 29 PPPTISWYRNGSISGGSGGLGSSG----STLTLSSVTSEDSGTYTCVASN 74
Score = 34.3 bits (78), Expect = 0.056
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 1444 KFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRAT 1503
C A G P + W+ NG + V EDSG Y C A+
Sbjct: 19 TLTCS-AEGGPPPPTISWYRNGSISGGSGGLGSSG----STLTLSSVTSEDSGTYTCVAS 73
Query: 1504 N 1504
N
Sbjct: 74 N 74
Score = 33.1 bits (75), Expect = 0.14
Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 706 APVFTVPLSNIDDLREGENAHFEARLTPTDDPKLKVEWFWNGKPMKTGSRFRTFCDFGFV 765
PV TV S G A P P + W+ NG +
Sbjct: 1 KPVITVSPSPSVTSGGGVTLTCSAEGGP---PPPTISWYRNGSISGGSGGLGS----SGS 53
Query: 766 ILEISPVYPEDCGQYSCRAYN 786
L +S V ED G Y+C A N
Sbjct: 54 TLTLSSVTSEDSGTYTCVASN 74
Score = 32.7 bits (74), Expect = 0.18
Identities = 17/81 (20%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 408 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 467
P T G C+ P + W+ NG +
Sbjct: 1 KPVITVSPSPSV--TSGGGVTLTCS-AEGGPPPPTISWYRNGSISGGSGGLGSSG----S 53
Query: 468 VMDIAYVQSHDSGEYVCRAWN 488
+ ++ V S DSG Y C A N
Sbjct: 54 TLTLSSVTSEDSGTYTCVASN 74
Score = 32.3 bits (73), Expect = 0.28
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 333 IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 387
G T+ + NG S + + + L + ED+G YTC A+N
Sbjct: 24 AEGGPPPPTISWYRNGSISGGSGGLGSSGS----TLTLSSVTSEDSGTYTCVASN 74
>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like
domain of myomesin and M-protein. Ig_Myomesin_like_C:
domain similar to the C-temrinal immunoglobulin
(Ig)-like domain of myomesin and M-protein. Myomesin and
M-protein are both structural proteins localized to the
M-band, a transverse structure in the center of the
sarcomere, and are candidates for M-band bridges. Both
proteins are modular, consisting mainly of repetitive
Ig-like and fibronectin type III (FnIII) domains.
Myomesin is expressed in all types of vertebrate
striated muscle; M-protein has a muscle-type specific
expression pattern. Myomesin is present in both slow and
fast fibers; M-protein is present only in fast fibers.
It has been suggested that myomesin acts as a molecular
spring with alternative splicing as a means of modifying
its elasticity.
Length = 92
Score = 39.0 bits (91), Expect = 0.002
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 138 ATMKIGKLLC-TLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG-FVVMDIAYVQSHDS 195
T+ GK L T T DP+ +V W N + + + + + G + + I V S DS
Sbjct: 11 VTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDS 70
Query: 196 GEYVCQWFVNNK 207
G+Y V NK
Sbjct: 71 GKYGI--VVKNK 80
Score = 38.3 bits (89), Expect = 0.003
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 1453 GDPNMKVEWFLNGKPLPHKNRFNPIYDFG-YVAMNFGWVYPEDSGEYLCRATNLYG 1507
GDP+ +V W N + L + +N + G Y ++ V EDSG+Y N YG
Sbjct: 27 GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82
Score = 36.7 bits (85), Expect = 0.010
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 736 DPKLKVEWFWNGKPMKTGSRFRTFCDFG-FVILEISPVYPEDCGQYSCRAYNDYG 789
DP +V W N + + + + G + L I V ED G+Y N YG
Sbjct: 28 DPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82
Score = 36.7 bits (85), Expect = 0.011
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-LIMRQVFMEDSGVFAVIAENRGG 1719
GDP P + W + D + S + + K L ++ V EDSG + ++ +N+ G
Sbjct: 27 GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82
Score = 35.2 bits (81), Expect = 0.043
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFG-FVILEINDV 981
P +T+ E + C T DP V W N +AL+ + G + L I V
Sbjct: 8 PDVVTIMEGKTLNLTC--TVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGV 65
Query: 982 YLRDSGLYTCKATNKHGEATTSCKLTV 1008
DSG Y NK+G T ++V
Sbjct: 66 SSEDSGKYGIVVKNKYGGETVDVTVSV 92
Score = 34.8 bits (80), Expect = 0.056
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFG-YVALDIVGAYAEDSGIYTVKATNSKGSATTSGTL 295
P W N++ L + + G Y +L I G +EDSG Y + N G T T+
Sbjct: 31 PEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90
Score = 34.4 bits (79), Expect = 0.070
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 6 DPNLKIEWFKNGVPLSLGSRIRSTFDFG-LVTLSINSLRADDSAIYTCKATNLLGEAVST 64
DP+ ++ W KN L+L + G +L+I + ++DS Y N G
Sbjct: 28 DPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD 87
Query: 65 CTLKI 69
T+ +
Sbjct: 88 VTVSV 92
Score = 33.6 bits (77), Expect = 0.13
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 432 TLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG-FVVMDIAYVQSHDSGEY 482
T T DP+ +V W N + + + + + G + + I V S DSG+Y
Sbjct: 22 TCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKY 73
Score = 31.7 bits (72), Expect = 0.78
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 533 DPTMRIDWFFNGRPFATGSRVKTVYDFG-FISLDMDYVYARDSGEYICRATNKWG 586
DP + W N + A + G + SL + V + DSG+Y NK+G
Sbjct: 28 DPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82
Score = 31.7 bits (72), Expect = 0.78
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1083 DPTMRIDWFFNGRPFATGSRVKTVYDFG-FISLDMDYVYARDSGEYICRATNKWG 1136
DP + W N + A + G + SL + V + DSG+Y NK+G
Sbjct: 28 DPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82
Score = 31.3 bits (71), Expect = 1.0
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 1766 ISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAV-VEDSGAYECVAMNNAG 1822
+ +V WLKN + + Y E + L I+ V EDSG Y V N G
Sbjct: 25 VFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82
Score = 30.9 bits (70), Expect = 1.5
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 336 GDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 394
GD V +L N + + S V L I G ED+G Y NK+G +
Sbjct: 27 GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86
Query: 395 SV 396
V
Sbjct: 87 DV 88
>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of
peroxidasin. Ig3_Peroxidasin: the third immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted and has functions related to
the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 74
Score = 38.4 bits (89), Expect = 0.002
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 1757 GQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECV 1816
GQ F + + W K G ++ D R+ L TL I + D G YEC
Sbjct: 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQ 58
Query: 1817 AMNNAGEARCEAELVV 1832
A+N G R A+L V
Sbjct: 59 AVNIVGSQRTVAQLTV 74
Score = 31.8 bits (72), Expect = 0.41
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 930 ESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLY 989
E F C P + W G LS R ++ L I+ V L D G Y
Sbjct: 1 EGQTVDFLCE--AQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQY 55
Query: 990 TCKATNKHGEATTSCKLTV 1008
C+A N G T +LTV
Sbjct: 56 ECQAVNIVGSQRTVAQLTV 74
Score = 31.8 bits (72), Expect = 0.46
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEA 61
E + P I W K G LS+ R G TL I+ + D Y C+A N++G
Sbjct: 10 EAQGYPQPVIAWTKGGSQLSVDRR-HLVLSSG--TLRISRVALHDQGQYECQAVNIVGSQ 66
Query: 62 VSTCTLKI 69
+ L +
Sbjct: 67 RTVAQLTV 74
Score = 31.4 bits (71), Expect = 0.55
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 518 EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEY 577
E V F C E + P I W G + R V G +L + V D G+Y
Sbjct: 1 EGQTVDFLC--EAQGYPQPVIAWTKGGSQLSVDRR-HLVLSSG--TLRISRVALHDQGQY 55
Query: 578 ICRATNKWGTAMTKAKVI 595
C+A N G+ T A++
Sbjct: 56 ECQAVNIVGSQRTVAQLT 73
Score = 31.4 bits (71), Expect = 0.55
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 1068 EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEY 1127
E V F C E + P I W G + R V G +L + V D G+Y
Sbjct: 1 EGQTVDFLC--EAQGYPQPVIAWTKGGSQLSVDRR-HLVLSSG--TLRISRVALHDQGQY 55
Query: 1128 ICRATNKWGTAMTKAKVI 1145
C+A N G+ T A++
Sbjct: 56 ECQAVNIVGSQRTVAQLT 73
Score = 31.4 bits (71), Expect = 0.56
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 1439 EMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEY 1498
E Q+ F C+ G P + W G L +R + + G + V D G+Y
Sbjct: 1 EGQTVDFLCEAQ--GYPQPVIAWTKGGSQLS-VDRRHLVLSSG--TLRISRVALHDQGQY 55
Query: 1499 LCRATNLYGMDETRAIL 1515
C+A N+ G T A L
Sbjct: 56 ECQAVNIVGSQRTVAQL 72
>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human
myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth
immunoglobulin (Ig)-like domain of human myosin
light-chain kinase (MLCK). MLCK is a key regulator of
different forms of cell motility involving actin and
myosin II. Agonist stimulation of smooth muscle cells
increases cytosolic Ca2+, which binds calmodulin. This
Ca2+-calmodulin complex in turn binds to and activates
MLCK. Activated MLCK leads to the phosphorylation of the
20 kDa myosin regulatory light chain (RLC) of myosin II
and the stimulation of actin-activated myosin MgATPase
activity. MLCK is widely present in vertebrate tissues;
it phosphorylates the 20 kDa RLC of both smooth and
nonmuscle myosin II. Phosphorylation leads to the
activation of the myosin motor domain and altered
structural properties of myosin II. In smooth muscle
MLCK it is involved in initiating contraction. In
nonmuscle cells, MLCK may participate in cell division
and cell motility; it has been suggested MLCK plays a
role in cardiomyocyte differentiation and contraction
through regulation of nonmuscle myosin II.
Length = 98
Score = 39.2 bits (91), Expect = 0.002
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 335 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 394
G Q +T ++ K I+ I+ + L I + E G YT NK G +
Sbjct: 25 TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQA 84
Query: 395 SVNLECVDKSKGQPP 409
VNL VDK PP
Sbjct: 85 QVNLTVVDKP--DPP 97
Score = 32.2 bits (73), Expect = 0.48
Identities = 22/85 (25%), Positives = 33/85 (38%)
Query: 1754 INVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAY 1813
+ G+ K++ T+P+ W+K K+I K +N L I E E G Y
Sbjct: 12 VRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCY 71
Query: 1814 ECVAMNNAGEARCEAELVVQSKKAP 1838
N G + + L V K P
Sbjct: 72 TLEVENKLGSRQAQVNLTVVDKPDP 96
>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of
peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin
(Ig)-like domain in peroxidasin. Peroxidasin has a
peroxidase domain and interacting extracellular motifs
containing four Ig-like domains. It has been suggested
that peroxidasin is secreted, and has functions related
to the stabilization of the extracellular matrix. It may
play a part in various other important processes such as
removal and destruction of cells, which have undergone
programmed cell death, and protection of the organism
against non-self.
Length = 69
Score = 38.3 bits (89), Expect = 0.002
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKCS 1724
GDP PTI W ++ +T S F I S + L +R V + D G + +A N G A S
Sbjct: 9 GDPEPTITWNKDGVQVTESGKFHI---SPEGYLAIRDVGVADQGRYECVARNTIGYASVS 65
Query: 1725 ANL 1727
L
Sbjct: 66 MVL 68
Score = 33.3 bits (76), Expect = 0.10
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 945 DPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSC 1004
DP T+ W +G ++ + I+ G+ L I DV + D G Y C A N G A+ S
Sbjct: 10 DPEPTITWNKDGVQVTESGKFH-ISPEGY--LAIRDVGVADQGRYECVARNTIGYASVSM 66
Query: 1005 KLT 1007
L+
Sbjct: 67 VLS 69
Score = 31.0 bits (70), Expect = 0.71
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 1776 WLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAEL 1830
W K+G ++ ++ E L I + V D G YECVA N G A L
Sbjct: 17 WNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68
>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig3_NCAM-1_like: domain similar to the third
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in the
development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular extensions.
The extracellular portion of NCAM has five N-terminal
Ig-like domains and two fibronectin type III domains. The
double zipper adhesion complex model for NCAM homophilic
binding involves Ig1, Ig2, and Ig3. By this model,
Ig1,and Ig2 mediate dimerization of NCAM molecules
situated on the same cell surface (cis interactions), and
Ig3 domains mediate interactions between NCAM molecules
expressed on the surface of opposing cells (trans
interactions), through binding to the Ig1 and Ig2
domains. The adhesive ability of NCAM is modulated by the
addition of polysialic acid chains to the fifth Ig-like
domain.
Length = 95
Score = 38.8 bits (90), Expect = 0.002
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 1664 DGDPLPTIKWFREDFPITSSPDFQIHTFS-TKSILIMRQVFMEDSGVFAVIAENRGGKAK 1722
DG P PT+ W ++ PI S + ++F+ S + + V D + IAEN+ G+ +
Sbjct: 28 DGFPEPTMTWTKDGEPIESGEE--KYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQE 85
Query: 1723 CSANLVV 1729
+L V
Sbjct: 86 AEIHLKV 92
Score = 33.8 bits (77), Expect = 0.15
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCT 66
P + W K+G P+ G + +F+ ++I + D A YTC A N GE +
Sbjct: 31 PEPTMTWTKDGEPIESGEE-KYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89
Query: 67 LKI 69
LK+
Sbjct: 90 LKV 92
Score = 33.8 bits (77), Expect = 0.16
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 946 PSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCK 1005
P T+ W +G+ + +G + N+ G + I DV D YTC A NK GE
Sbjct: 31 PEPTMTWTKDGEPIESGEEKYSFNEDGSE-MTILDVDKLDEAEYTCIAENKAGEQEAEIH 89
Query: 1006 LTV 1008
L V
Sbjct: 90 LKV 92
Score = 33.0 bits (75), Expect = 0.25
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 737 PKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSAS 796
P+ + W +G+P+++G +F + G + I V D +Y+C A N GE
Sbjct: 31 PEPTMTWTKDGEPIESGEEKYSFNEDGSE-MTILDVDKLDEAEYTCIAENKAGEQEAEIH 89
Query: 797 MKVQGK 802
+KV K
Sbjct: 90 LKVFAK 95
Score = 31.8 bits (72), Expect = 0.61
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 1774 VYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQ 1833
+ W K+G+ I + ED + I++ D Y C+A N AGE E L V
Sbjct: 35 MTWTKDGEPIESGEEKYSFNEDG-SEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93
Query: 1834 SK 1835
+K
Sbjct: 94 AK 95
Score = 28.7 bits (64), Expect = 8.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 341 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 399
T+ + +G+PIE+ + + G + IL D YTC A NK G+ E ++L+
Sbjct: 34 TMTWTKDGEPIESGEEKYSFNEDGSE-MTILDVDKLDEAEYTCIAENKAGEQEAEIHLK 91
>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors and similar proteins. Ig1_Robo:
domain similar to the first immunoglobulin (Ig)-like
domain in Robo (roundabout) receptors. Robo receptors
play a role in the development of the central nervous
system (CNS), and are receptors of Slit protein. Slit is
a repellant secreted by the neural cells in the midline.
Slit acts through Robo to prevent most neurons from
crossing the midline from either side. Three mammalian
Robo homologs (robo1, -2, and -3), and three mammalian
Slit homologs (Slit-1,-2, -3), have been identified.
Commissural axons, which cross the midline, express low
levels of Robo; longitudinal axons, which avoid the
midline, express high levels of Robo. robo1, -2, and -3
are expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the Robo
family which instead of being a positive regulator of
slit responsiveness, antagonizes slit responsiveness in
precrossing axons. The Slit-Robo interaction is mediated
by the second leucine-rich repeat (LRR) domain of Slit
and the two N-terminal Ig domains of Robo, Ig1 and Ig2.
The primary Robo binding site for Slit2 has been shown by
surface plasmon resonance experiments and mutational
analysis to be is the Ig1 domain, while the Ig2 domain
has been proposed to harbor a weak secondary binding
site.
Length = 100
Score = 38.7 bits (90), Expect = 0.003
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 916 APEFLTTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKAL-----SAGSRIKTIND 970
P + P+DL +++ A C+ P+ T++W NG+ L S +
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCK--AEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPS 58
Query: 971 FGFVILEINDVYLR----DSGLYTCKATNKHGEATTS 1003
L + V+ R D G+Y C A N GEA +
Sbjct: 59 GSLFFLRV--VHGRKGRSDEGVYVCVAHNSLGEAVSR 93
Score = 38.3 bits (89), Expect = 0.004
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 1742 PPSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGK-----KIIPDIRYKTLEEDN 1796
PP + S +++ G A + K + WLKNG+ K P L +
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60
Query: 1797 LFTLLIIEAVV--EDSGAYECVAMNNAGEAR 1825
LF L ++ D G Y CVA N+ GEA
Sbjct: 61 LFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV 91
Score = 37.5 bits (87), Expect = 0.007
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 1053 PPVFTSQLQDNLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFAT-----GSRVKTVY 1107
PP D L V + +C+ E + PT I W NG+P T S + V
Sbjct: 1 PPRIVEHPSD-LIVSKGDPATLNCKAEGRPTPT--IQWLKNGQPLETDKDDPRSH-RIVL 56
Query: 1108 DFG---FISLDMDYVYARDSGEYICRATNKWGTAMTKA 1142
G F+ + D G Y+C A N G A+++
Sbjct: 57 PSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRN 94
Score = 37.5 bits (87), Expect = 0.008
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTF-----DFGLVTLSI--NSLRADDSAIYTCKATNLLG 59
P I+W KNG PL + L L + D +Y C A N LG
Sbjct: 29 PTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLG 88
Query: 60 EAVS 63
EAVS
Sbjct: 89 EAVS 92
Score = 36.0 bits (83), Expect = 0.027
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 513 NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFAT-----GSRVKTVYDFG---FISL 564
+L V + +C+ E + PT I W NG+P T S + V G F+ +
Sbjct: 10 DLIVSKGDPATLNCKAEGRPTPT--IQWLKNGQPLETDKDDPRSH-RIVLPSGSLFFLRV 66
Query: 565 DMDYVYARDSGEYICRATNKWGTAMTKA 592
D G Y+C A N G A+++
Sbjct: 67 VHGRKGRSDEGVYVCVAHNSLGEAVSRN 94
Score = 34.8 bits (80), Expect = 0.057
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 1562 APVFVSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLINGHTIV 1604
P V P V +G+PA + G P P + WL NG +
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLE 43
Score = 34.4 bits (79), Expect = 0.089
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 724 NAHFEARLTPTDDPKLKVEWFWNGKPMKT-----GSRFRTFCDFGFVILEISPVYP--ED 776
N E R TPT ++W NG+P++T S L + D
Sbjct: 22 NCKAEGRPTPT------IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSD 75
Query: 777 CGQYSCRAYNDYGEAVTSAS 796
G Y C A+N GEAV+ +
Sbjct: 76 EGVYVCVAHNSLGEAVSRNA 95
Score = 32.9 bits (75), Expect = 0.30
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 1655 DQARFEVEFDGDPLPTIKWFREDFPI-TSSPDFQIH--TFSTKSILIMRQVF----MEDS 1707
D A + +G P PTI+W + P+ T D + H + S+ +R V D
Sbjct: 17 DPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDE 76
Query: 1708 GVFAVIAENRGGKAKCSAN 1726
GV+ +A N G+A
Sbjct: 77 GVYVCVAHNSLGEAVSRNA 95
Score = 31.4 bits (71), Expect = 1.2
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 336 GDQTMTVEFLYNGKPIEA------SHRIRTVHAFGMVVLEILGTKI--EDTGVYTCRATN 387
G T T+++L NG+P+E SHRI + + + L ++ + D GVY C A N
Sbjct: 27 GRPTPTIQWLKNGQPLETDKDDPRSHRI-VLPSGSLFFLRVVHGRKGRSDEGVYVCVAHN 85
Query: 388 KWGQA 392
G+A
Sbjct: 86 SLGEA 90
>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain
of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule),
and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth
immunoglobulin (Ig)-like domain of L1, Ng-CAM
(Neuron-glia CAM cell adhesion molecule), and NrCAM
(Ng-CAM-related). These proteins belong to the L1
subfamily of cell adhesion molecules (CAMs) and are
comprised of an extracellular region having six Ig-like
domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. These
molecules are primarily expressed in the nervous system.
L1 is associated with an X-linked recessive disorder,
X-linked hydrocephalus, MASA syndrome, or spastic
paraplegia type 1, that involves abnormalities of axonal
growth.
Length = 76
Score = 37.8 bits (88), Expect = 0.003
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 323 GEIAHF--EASLIPVGDQTMTVEFLYNGKPIE--ASHRIRTVHAFGMVVLEILGTKIEDT 378
GE EA IP T+ + NG PIE R V G ++L + + DT
Sbjct: 1 GETGRLDCEAEGIP----QPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNV--QPNDT 53
Query: 379 GVYTCRATNKWGQAEISVNLECV 401
VY C A+N G + + V
Sbjct: 54 AVYQCNASNVHGYLLANAFVHVV 76
Score = 35.8 bits (83), Expect = 0.017
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 946 PSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHG 998
P T+ W NG + G ++ +++V D+ +Y C A+N HG
Sbjct: 14 PQPTITWRLNGVPIEELPPDPRRRVDGGTLI-LSNVQPNDTAVYQCNASNVHG 65
Score = 35.8 bits (83), Expect = 0.019
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAV 62
P I W NGVP+ G TL +++++ +D+A+Y C A+N+ G +
Sbjct: 14 PQPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNVQPNDTAVYQCNASNVHGYLL 68
Score = 35.5 bits (82), Expect = 0.025
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 1657 ARFEVEFDGDPLPTIKWFREDFPIT-SSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 1715
R + E +G P PTI W PI PD + LI+ V D+ V+ A
Sbjct: 4 GRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGG--TLILSNVQPNDTAVYQCNAS 61
Query: 1716 NRGGKAKCSANLVV 1729
N G +A + V
Sbjct: 62 NVHGYLLANAFVHV 75
Score = 33.5 bits (77), Expect = 0.097
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 524 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATN 583
DC E P I W NG P G +L + V D+ Y C A+N
Sbjct: 6 LDCEAEGI--PQPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNVQPNDTAVYQCNASN 62
Query: 584 KWGTAMTKAKV 594
G + A V
Sbjct: 63 VHGYLLANAFV 73
Score = 33.5 bits (77), Expect = 0.097
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 1074 FDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATN 1133
DC E P I W NG P G +L + V D+ Y C A+N
Sbjct: 6 LDCEAEGI--PQPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNVQPNDTAVYQCNASN 62
Query: 1134 KWGTAMTKAKV 1144
G + A V
Sbjct: 63 VHGYLLANAFV 73
Score = 33.1 bits (76), Expect = 0.13
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 1577 GEPARFCTRVTGYPRPRVMWLINGHTI 1603
GE R G P+P + W +NG I
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPI 27
Score = 32.8 bits (75), Expect = 0.21
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 592 AKVICKVL---TVIVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
++ C+ + W NG + R D G +IL + ++ VY+C A+
Sbjct: 4 GRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQ--PNDTAVYQCNAS 61
Query: 648 NKYG 651
N +G
Sbjct: 62 NVHG 65
Score = 32.4 bits (74), Expect = 0.27
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 1445 FECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATN 1504
+C+ G P + W LNG P+ + +P + V P D+ Y C A+N
Sbjct: 6 LDCEAE--GIPQPTITWRLNGVPI-EELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASN 62
Query: 1505 LYG 1507
++G
Sbjct: 63 VHG 65
Score = 30.4 bits (69), Expect = 1.5
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 737 PKLKVEWFWNGKPMKTGSRFRTFCDFGFVILEISPVYPEDCGQYSCRAYNDYGEAVTSAS 796
P+ + W NG P++ G ++ +S V P D Y C A N +G + +A
Sbjct: 14 PQPTITWRLNGVPIEELPPDPRRRVDGGTLI-LSNVQPNDTAVYQCNASNVHGYLLANAF 72
Query: 797 MKV 799
+ V
Sbjct: 73 VHV 75
>gnl|CDD|214650 smart00406, IGv, Immunoglobulin V-Type.
Length = 81
Score = 37.4 bits (87), Expect = 0.005
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 21 SLGSRIRSTFD--FGLVTLSINSLRADDSAIYTCK 53
S R + D V+L+I++LR +D+ Y C
Sbjct: 46 SYKGRFTISKDTSKNDVSLTISNLRVEDTGTYYCA 80
>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin. Ig1_Contactin:
First Ig domain of contactins. Contactins are neural cell
adhesion molecules and are comprised of six Ig domains
followed by four fibronectin type III(FnIII) domains
anchored to the membrane by glycosylphosphatidylinositol.
The first four Ig domains form the intermolecular binding
fragment, which arranges as a compact U-shaped module via
contacts between Ig domains 1 and 4, and between Ig
domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a
part in the neuronal processes of neurite outgrowth, axon
guidance and fasciculation, and neuronal migration. This
group also includes contactin-1 and contactin-5. The
different contactins show different expression patterns
in the central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5 is
expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack of
contactin-5 (NB-2) results in an impairment of neuronal
activity in the rat auditory system. Contactin-5 is
highly expressed in the adult human brain in the
occipital lobe and in the amygdala. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 91
Score = 37.0 bits (86), Expect = 0.010
Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 1054 PVFTSQLQDNL---DVPEAGKVHFDCRLEPKSDPTMRIDWFFNGR--PFATGSRVKTVYD 1108
PVF Q D + + E GKV +CR PT R W NG SR V
Sbjct: 2 PVFEEQPDDTIFPEESDE-GKVSLNCRARGSPPPTYR--WLMNGTEIDDEPDSRYSLVGG 58
Query: 1109 FGFISLDMDYVYARDSGEYICRATNKWGT 1137
IS + A+D+G Y C A+N GT
Sbjct: 59 NLVIS---NPSKAKDAGRYQCLASNIVGT 84
Score = 33.2 bits (76), Expect = 0.18
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 520 GKVHFDCRLEPKSDPTMRIDWFFNGR--PFATGSRVKTVYDFGFISLDMDYVYARDSGEY 577
GKV +CR PT R W NG SR V IS + A+D+G Y
Sbjct: 20 GKVSLNCRARGSPPPTYR--WLMNGTEIDDEPDSRYSLVGGNLVIS---NPSKAKDAGRY 74
Query: 578 ICRATNKWGT 587
C A+N GT
Sbjct: 75 QCLASNIVGT 84
Score = 32.8 bits (75), Expect = 0.31
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEA 61
R P W NG + R + G + +S N +A D+ Y C A+N++G
Sbjct: 27 RARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVIS-NPSKAKDAGRYQCLASNIVGTV 85
Query: 62 VST 64
+S
Sbjct: 86 LSR 88
Score = 32.4 bits (74), Expect = 0.39
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 1771 PLDVY-WLKNGKKI--IPDIRYKTLEEDNLFTLLIIEAVVE--DSGAYECVAMNNAG 1822
P Y WL NG +I PD RY + + L+I + D+G Y+C+A N G
Sbjct: 32 PPPTYRWLMNGTEIDDEPDSRYSLVGGN-----LVISNPSKAKDAGRYQCLASNIVG 83
Score = 30.5 bits (69), Expect = 1.8
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 728 EARLTPTDDPKLKVEWFWNGKPMKTGSRFR-TFCDFGFVILEISPVYPEDCGQYSCRAYN 786
AR +P P + W NG + R + VI +P +D G+Y C A N
Sbjct: 27 RARGSPP--PTYR--WLMNGTEIDDEPDSRYSLVGGNLVIS--NPSKAKDAGRYQCLASN 80
Query: 787 DYGEAVTS 794
G ++
Sbjct: 81 IVGTVLSR 88
Score = 30.1 bits (68), Expect = 2.3
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGK 1720
G P PT +W I PD + ++ +++I +D+G + +A N G
Sbjct: 30 GSPPPTYRWLMNGTEIDDEPDSR-YSLVGGNLVISNPSKAKDAGRYQCLASNIVGT 84
>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 2 (VEGFR-2).
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 2 (VEGFR-2).
The VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. VEGFRs bind VEGFs with high
affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a
major mediator of the mitogenic, angiogenic and
microvascular permeability-enhancing effects of VEGF-A;
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGF-A also interacts with VEGFR-1,
which it binds more strongly than VEGFR-2. VEGFR-2 and
-1 may mediate a chemotactic and a survival signal in
hematopoietic stem cells or leukemia cells.
Length = 70
Score = 36.4 bits (84), Expect = 0.010
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 1657 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716
+ V++ G P P +KW++ I + HTF L + +V +D+G + V+ N
Sbjct: 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-----HTFKRGVHLTIYEVTEKDAGNYTVVLTN 55
Query: 1717 RGGKAK 1722
K +
Sbjct: 56 PITKEE 61
Score = 33.4 bits (76), Expect = 0.13
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATN 284
P +W+ N + + FK L I +D+G YTV TN
Sbjct: 13 PEVKWYKNGQLIVLNHTFKRGV-----HLTIYEVTEKDAGNYTVVLTN 55
Score = 30.7 bits (69), Expect = 0.88
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 347 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 388
NG+ I +H + L I +D G YT TN
Sbjct: 20 NGQLIVLNHTFKRGV-----HLTIYEVTEKDAGNYTVVLTNP 56
Score = 29.1 bits (65), Expect = 3.2
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 946 PSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNK 996
P V+W+ NG+ + K V L I +V +D+G YT TN
Sbjct: 11 PPPEVKWYKNGQLIVLNHTFKR-----GVHLTIYEVTEKDAGNYTVVLTNP 56
>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_3: subgroup of the immunoglobulin (Ig) domain found in
the Ig superfamily. The Ig superfamily is a heterogenous
group of proteins, built on a common fold comprised of a
sandwich of two beta sheets. Members of the Ig
superfamily are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 81
Score = 36.4 bits (84), Expect = 0.012
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 1757 GQLARFDAKISATKPLDVYWLK---NGKKII--PDIRYKTLEEDNLFTLLIIEAVVEDSG 1811
G+ A F ++ P ++ W K + +I P+ + N+ L+I A +D+G
Sbjct: 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60
Query: 1812 AYECVAMNNAGEARCEAELVV 1832
Y C A N+ G R L V
Sbjct: 61 LYTCTARNSGGLLRANFPLSV 81
Score = 29.8 bits (67), Expect = 2.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 976 LEINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
L I + +D+GLYTC A N G + L+V
Sbjct: 49 LVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81
>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain
of M-protein (also known as myomesin-2). Ig_M-protein_C:
the C-terminal immunoglobulin (Ig)-like domain of
M-protein (also known as myomesin-2). M-protein is a
structural protein localized to the M-band, a transverse
structure in the center of the sarcomere, and is a
candidate for M-band bridges. M-protein is modular
consisting mainly of repetitive IG-like and fibronectin
type III (FnIII) domains, and has a muscle-type specific
expression pattern. M-protein is present in fast fibers.
Length = 92
Score = 36.4 bits (84), Expect = 0.014
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSI-LIMRQVFMEDSGVFAVIAENRGG 1719
G+P P + WF+ D I S + + K L ++ V EDSG +++ +N+ G
Sbjct: 27 GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG 82
Score = 34.5 bits (79), Expect = 0.069
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 1453 GDPNMKVEWFLNGKPLPHKNRFNPIYDFG-YVAMNFGWVYPEDSGEYLCRATNLYG 1507
G+P+ +V WF N + + ++ + G Y ++ V EDSG+Y N YG
Sbjct: 27 GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG 82
Score = 34.5 bits (79), Expect = 0.070
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 736 DPKLKVEWFWNGKPMKTGSRFRTFCDFG-FVILEISPVYPEDCGQYSCRAYNDYG 789
+P +V WF N + ++ + + G + L I V ED G+YS N YG
Sbjct: 28 NPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG 82
Score = 34.5 bits (79), Expect = 0.079
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 923 PTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFG-FVILEINDV 981
P +T+ E + C T +P V WF N + + + G + L I V
Sbjct: 8 PDVVTIMEGKTLNLTC--TVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGV 65
Query: 982 YLRDSGLYTCKATNKHGEATTSCKLTV 1008
DSG Y+ NK+G T ++V
Sbjct: 66 TSEDSGKYSINVKNKYGGETVDVTVSV 92
Score = 33.7 bits (77), Expect = 0.13
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFG-YVALDIVGAYAEDSGIYTVKATNSKGSAT 290
P WF N++ + + + G Y +L I G +EDSG Y++ N G T
Sbjct: 31 PEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85
Score = 31.4 bits (71), Expect = 0.83
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 423 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG-FVVMDIAYVQSHDSGE 481
+G + + CT+ +P+ +V WF N + I + + G + + I V S DSG+
Sbjct: 15 EGKTLNLTCTV--FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGK 72
Query: 482 YVCRAWNNF 490
Y N +
Sbjct: 73 YSINVKNKY 81
Score = 29.9 bits (67), Expect = 2.6
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 139 TMKIGKLL-CTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG-FVVMDIAYVQSHDSG 196
T+ GK L T T +P+ +V WF N + I + + G + + I V S DSG
Sbjct: 12 TIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSG 71
Query: 197 EY 198
+Y
Sbjct: 72 KY 73
>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of
semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like
domain in semaphorins. Semaphorins are transmembrane
protein that have important roles in a variety of
tissues. Functionally, semaphorins were initially
characterized for their importance in the development of
the nervous system and in axonal guidance. Later they
have been found to be important for the formation and
functioning of the cardiovascular, endocrine,
gastrointestinal, hepatic, immune, musculoskeletal,
renal, reproductive, and respiratory systems.
Semaphorins function through binding to their receptors
and transmembrane semaphorins also serves as receptors
themselves. Although molecular mechanism of semaphorins
is poorly understood, the Ig-like domains may involve in
ligand binding or dimerization.
Length = 89
Score = 36.2 bits (84), Expect = 0.016
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD----IAYVQSHDS 479
G+S EC+ V W G P+ K + +V + I V D+
Sbjct: 11 GNSVFLECSP---KSNLASVVWLFQGGPLQRKE----EPEERLLVTEDGLLIRSVSPADA 63
Query: 480 GEYVC 484
G Y C
Sbjct: 64 GVYTC 68
Score = 35.1 bits (81), Expect = 0.037
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 921 TTPTDLTLAESTLAHFECRLTPTNDPSMTVEWFHNGKALSA----GSRIKTINDFGFVIL 976
+T+ E EC +V W G L R+ D G +I
Sbjct: 1 AEEKVVTVVEGNSVFLECSP---KSNLASVVWLFQGGPLQRKEEPEERLLVTED-GLLIR 56
Query: 977 EINDVYLRDSGLYTCKATNKHGEATTSCKLTV 1008
++ D+G+YTC++ +HG T ++
Sbjct: 57 SVS---PADAGVYTCQSV-EHGFKQTLATYSL 84
Score = 33.9 bits (78), Expect = 0.10
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 1436 QLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGW----VY 1491
+VE S EC V W G PL K + + G V
Sbjct: 7 TVVEGNSVFLECSPK---SNLASVVWLFQGGPLQRKE----EPEERLLVTEDGLLIRSVS 59
Query: 1492 PEDSGEYLCRAT 1503
P D+G Y C++
Sbjct: 60 PADAGVYTCQSV 71
Score = 33.9 bits (78), Expect = 0.11
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 158 KVEWFHNGKPIFHKNRVKMVSDFGFVVMD----IAYVQSHDSGEYVCQ 201
V W G P+ K + +V + I V D+G Y CQ
Sbjct: 26 SVVWLFQGGPLQRKE----EPEERLLVTEDGLLIRSVSPADAGVYTCQ 69
Score = 29.7 bits (67), Expect = 2.9
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 1774 VYWLKNGK----KIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVA 1817
V WL G K P+ R E+ LLI D+G Y C +
Sbjct: 27 VVWLFQGGPLQRKEEPEERLLVTED----GLLIRSVSPADAGVYTCQS 70
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 39.7 bits (93), Expect = 0.016
Identities = 41/185 (22%), Positives = 63/185 (34%), Gaps = 52/185 (28%)
Query: 1164 AEKLKELEKNYTPEEIEEDEIPEEP-------PRLNQSRYKKQNQSAWYDSELSEYQKER 1216
AE L ++ K E E+PE L + + Q++ SEL ++
Sbjct: 200 AEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKI 259
Query: 1217 ANE--------STELEKHDIVTESQ-----------LPDSMSAEKLKELEKNYTP----- 1252
A E E D++++ +P EKLK++ T
Sbjct: 260 AEELLAVREILEIEKALGDVLSKLARTEYTLAIEGWVPAD-EVEKLKKIINRATGGAAYF 318
Query: 1253 EEIEEDEIPEEPP------RFITEIESVTVQEAEPVRFETRVEPR-VDPRLRVECSLSTA 1305
E E DE EE P +FI+ ES+T + +DP + A
Sbjct: 319 EVSETDEDKEEVPTKLRNPKFISPFESLT-------EMYGIPKYGEIDP------TPFLA 365
Query: 1306 FFFPF 1310
FFP
Sbjct: 366 LFFPL 370
>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR).
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR). The
VEGFRs have an extracellular component with seven Ig-like
domains, a transmembrane segment, and an intracellular
tyrosine kinase domain interrupted by a kinase-insert
domain. The VEGFR family consists of three members,
VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4).
VEGFRs bind VEGFs with high affinity at the Ig-like
domains. VEGF-A is important to the growth and
maintenance of vascular endothelial cells and to the
development of new blood- and lymphatic-vessels in
physiological and pathological states. VEGFR-2 is a major
mediator of the mitogenic, angiogenic and microvascular
permeability-enhancing effects of VEGF-A. VEGFR-1 may
play an inhibitory part in these processes by binding
VEGF and interfering with its interaction with VEGFR-2.
VEGFR-1 has a signaling role in mediating monocyte
chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and
a survival signal in hematopoietic stem cells or leukemia
cells. VEGFR-3 has been shown to be involved in tumor
angiogenesis and growth.
Length = 71
Score = 35.5 bits (82), Expect = 0.017
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 1760 ARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMN 1819
R K+ A P ++ W KNGK I R K +L I + ED+G Y V N
Sbjct: 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSG----HSLTIKDVTEEDAGNYTVVLTN 56
Query: 1820 --NAGEARCEAELVV 1832
E R LVV
Sbjct: 57 KQAKLEKRLTFTLVV 71
Score = 33.5 bits (77), Expect = 0.086
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 1657 ARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAEN 1716
R V+ P P I+W++ I+ + T + L ++ V ED+G + V+ N
Sbjct: 1 VRLPVKVKAYPPPEIQWYKNGKLISE----KNRTKKSGHSLTIKDVTEEDAGNYTVVLTN 56
Query: 1717 R--GGKAKCSANLVV 1729
+ + + + LVV
Sbjct: 57 KQAKLEKRLTFTLVV 71
Score = 32.4 bits (74), Expect = 0.24
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 439 PELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWN 488
P +++W+ NGK I KNR S + D V D+G Y N
Sbjct: 11 PPPEIQWYKNGKLISEKNR-TKKSGHSLTIKD---VTEEDAGNYTVVLTN 56
Score = 32.0 bits (73), Expect = 0.32
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 946 PSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNK 996
P ++W+ NGK +S +R K G L I DV D+G YT TNK
Sbjct: 11 PPPEIQWYKNGKLISEKNRTKKS---GHS-LTIKDVTEEDAGNYTVVLTNK 57
Score = 31.6 bits (72), Expect = 0.51
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 155 PELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 198
P +++W+ NGK I KNR S + D V D+G Y
Sbjct: 11 PPPEIQWYKNGKLISEKNR-TKKSGHSLTIKD---VTEEDAGNY 50
>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin.
Ig3_Contactin_like: Third Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5 is
expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack of
contactin-5 (NB-2) results in an impairment of neuronal
act ivity in the rat auditory system. Contactin-5 is
highly expressed in the adult human brain in the
occipital lobe and in the amygdala. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 35.9 bits (83), Expect = 0.018
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 1698
P + + A + E G+P+P IKW + D + SS + + ++L
Sbjct: 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAE----ISMSGAVLK 56
Query: 1699 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 1730
+ + ED G + AEN GK + V+
Sbjct: 57 IPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88
Score = 30.1 bits (68), Expect = 1.9
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 20/88 (22%)
Query: 1765 KISATKPLDVYWLKNGKKI----------IPDIRYKTLEEDNLFTLLII--EAVV----- 1807
I P D Y LK G+ + +P I+++ ++ + I AV+
Sbjct: 2 SIIVVFPKDTYALK-GQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNI 60
Query: 1808 --EDSGAYECVAMNNAGEARCEAELVVQ 1833
ED G YEC A N G+ + + VQ
Sbjct: 61 QFEDEGTYECEAENIKGKDTHQGRIYVQ 88
Score = 28.6 bits (64), Expect = 7.3
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 325 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV-----------VLEILGT 373
I F + Q +T+E G P+ +I+ G + VL+I
Sbjct: 4 IVVFPKDTYALKGQNVTLECFALGNPVP---QIKWRKVDGSMPSSAEISMSGAVLKIPNI 60
Query: 374 KIEDTGVYTCRATNKWGQ 391
+ ED G Y C A N G+
Sbjct: 61 QFEDEGTYECEAENIKGK 78
>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2.
Ig1_Contactin-2: First Ig domain of the neural cell
adhesion molecule contactin-2-like. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (TAG-1,
axonin-1) facilitates cell adhesion by homophilic binding
between molecules in apposed membranes. It may play a
part in the neuronal processes of neurite outgrowth, axon
guidance and fasciculation, and neuronal migration. The
first four Ig domains form the intermolecular binding
fragment, which arranges as a compact U-shaped module by
contacts between IG domains 1 and 4, and domains 2 and 3.
The different contactins show different expression
patterns in the central nervous system. During
development and in adulthood, contactin-2 is transiently
expressed in subsets of central and peripheral neurons.
Contactin-2 is also expressed in retinal amacrine cells
in the developing chick retina, corresponding to the
period of formation and maturation of AC processes.
Length = 94
Score = 36.1 bits (83), Expect = 0.020
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 1054 PVFTSQLQDNLDVPEA---GKVHFDCRLEPKSDPTMRIDWFFNGR--PFATGSRVKTVYD 1108
PVF Q L PE KV CR ++ P W NG FA SR V
Sbjct: 2 PVFEEQPSSLL-FPEGSPEEKVTLGCR--ARASPPATYRWKMNGTEIKFAPESRYTLVAG 58
Query: 1109 FGFISLDMDYVYARDSGEYICRATNKWGTAMTK 1141
I + ARD+G Y C A N+ GT +++
Sbjct: 59 NLVI---NNPQKARDAGSYQCLAINRCGTVVSR 88
Score = 34.5 bits (79), Expect = 0.080
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
RA P W NG + R T G + ++ N +A D+ Y C A N G VS
Sbjct: 29 RASPPATYRWKMNGTEIKFAPESRYTLVAGNLVIN-NPQKARDAGSYQCLAINRCGTVVS 87
Score = 33.4 bits (76), Expect = 0.16
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 520 GKVHFDCRLEPKSDPTMRIDWFFNGR--PFATGSRVKTVYDFGFISLDMDYVYARDSGEY 577
KV CR ++ P W NG FA SR V I + ARD+G Y
Sbjct: 20 EKVTLGCR--ARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVI---NNPQKARDAGSY 74
Query: 578 ICRATNKWGTAMTK 591
C A N+ GT +++
Sbjct: 75 QCLAINRCGTVVSR 88
>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1.
Ig3_Contactin-1: Third Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may through
a RhoA mechanism, facilitate invasion and metastasis of
human lung adenocarcinoma.
Length = 88
Score = 35.8 bits (82), Expect = 0.021
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 1639 PPVFTKKIQPCRAFEQDQARFEVEFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILI 1698
P K + A + E G+P+P I+W + P+ ++ + + + ++L
Sbjct: 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM----SGAVLK 56
Query: 1699 MRQVFMEDSGVFAVIAENRGGKAKCSANLVVE 1730
+ + ED G + AEN GK K A + V+
Sbjct: 57 IFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88
Score = 31.1 bits (70), Expect = 0.87
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 1424 PPRFVTQIKTQDQLVEMQSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYV 1483
P + K L Q+ EC +G+P + W +P+P I G V
Sbjct: 1 PADINVKFKDTYALKG-QNVTLEC--FALGNPVPVIRWRKILEPMPATAE---ISMSGAV 54
Query: 1484 AMNFGWVYPEDSGEYLCRATNLYGMDETRA 1513
F + PED G Y C A N+ G D+ +A
Sbjct: 55 LKIFN-IQPEDEGTYECEAENIKGKDKHQA 83
Score = 31.1 bits (70), Expect = 0.98
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 214 KFKTTHDFGYVALDIE-LMLKTLVPFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYA 272
KFK T+ + +E L VP W +P+PA A+ + G V L I
Sbjct: 7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMS---GAV-LKIFNIQP 62
Query: 273 EDSGIYTVKATNSKG 287
ED G Y +A N KG
Sbjct: 63 EDEGTYECEAENIKG 77
>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2)
of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2.
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain
II (D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2. Perlecan
consists of five domains. Domain I has three putative
heparan sulfate attachment sites; domain II has four LDL
receptor-like repeats, and one Ig-like repeat; domain III
resembles the short arm of laminin chains; domain IV has
multiple Ig-like repeats (21 repeats in human perlecan);
and domain V resembles the globular G domain of the
laminin A chain and internal repeats of EGF. Perlecan may
participate in a variety of biological functions
including cell binding, LDL-metabolism, basement membrane
assembly and selective permeability, calcium binding, and
growth- and neurite-promoting activities.
Length = 78
Score = 34.8 bits (80), Expect = 0.035
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 1441 QSTKFECQLAPVGDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLC 1500
++ +F C G P + W LN +P R + + GY + V D G Y C
Sbjct: 2 ETVEFTCV--ATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTC 59
Query: 1501 RATNLYGM 1508
A N GM
Sbjct: 60 EAINTRGM 67
Score = 34.4 bits (79), Expect = 0.051
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 936 FECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATN 995
F C T P+ + W N + +R+ ++ G+ L I DV D G YTC+A N
Sbjct: 6 FTCVATGV--PTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAIN 63
Query: 996 KHGE--ATTSCKLTV 1008
G LTV
Sbjct: 64 TRGMVFGIPDGILTV 78
Score = 34.0 bits (78), Expect = 0.075
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKG 287
P W +N +P A+ T + GY L I D G YT +A N++G
Sbjct: 16 PIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRG 66
Score = 34.0 bits (78), Expect = 0.085
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 424 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 483
G++ F C T V P + W N + RV + S+ G+ + I V+ D G Y
Sbjct: 1 GETVEFTCVATGV--PTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYT 58
Query: 484 CRAWNN--FIFIPP 495
C A N +F P
Sbjct: 59 CEAINTRGMVFGIP 72
Score = 31.3 bits (71), Expect = 0.63
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 1784 IPDIRYKTLEEDNLFTLLIIEAVVE-DSGAYECVAMNNAG 1822
+PD ++ + + L I V E D GAY C A+N G
Sbjct: 27 VPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRG 66
Score = 30.9 bits (70), Expect = 0.99
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLG 59
P I W N + +R+ T + G TL+I ++ D YTC+A N G
Sbjct: 14 PTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRG 66
>gnl|CDD|143273 cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-like domain of neural
cell adhesion molecule NCAM-1. Ig1_NCAM-1: first
immunoglobulin (Ig)-like domain of neural cell adhesion
molecule NCAM-1. NCAM-1 plays important roles in the
development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-nonNCAM), interactions. NCAM is expressed as three
major isoforms having different intracellular extensions.
The extracellular portion of NCAM has five N-terminal
Ig-like domains and two fibronectin type III domains. The
double zipper adhesion complex model for NCAM homophilic
binding involves the Ig1, Ig2, and Ig3 domains. By this
model, Ig1 and Ig2 mediate dimerization of NCAM molecules
situated on the same cell surface (cis interactions), and
Ig3 domains mediate interactions between NCAM molecules
expressed on the surface of opposing cells (trans
interactions), through binding to the Ig1 and Ig2
domains. The adhesive ability of NCAM is modulated by the
addition of polysialic acid chains to the fifth Ig-like
domain.
Length = 96
Score = 35.4 bits (81), Expect = 0.037
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 1750 SSAVINVGQLARFDAKISA-TKPLDVYWLK-NGKKIIPDIRYKTL--EEDNLFTLLIIEA 1805
S I+VG+ F +++ K D+ W NG+K+ P+ + ++ +D TL I A
Sbjct: 8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNA 67
Query: 1806 VVEDSGAYECVAMNNAGEARCEAELVVQSK 1835
++D+G Y+CV N E E+E V K
Sbjct: 68 NIDDAGIYKCVVSN---EDEGESEATVNVK 94
>gnl|CDD|143305 cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig)-like domain of
interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain
similar to the second immunoglobulin (Ig)-like domain of
interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1
beta are cytokines which participate in the regulation of
inflammation, immune responses, and hematopoiesis. These
cytokines bind to the IL-1 receptor type 1 (IL1R1), which
is activated on additional association with an accessory
protein, IL1RAP. IL-1 also binds the type II (IL1R2)
represented in this group. Mature IL1R2 consists of three
IG-like domains, a transmembrane domain, and a short
cytoplasmic domain. It lacks the large cytoplasmic domain
of Mature IL1R1, and does not initiate signal
transduction. A naturally occurring cytokine IL-1RA (IL-1
receptor antagonist) is widely expressed and binds to
IL-1 receptors, inhibiting the binding of IL-1 alpha and
IL-1 beta.
Length = 95
Score = 35.1 bits (81), Expect = 0.041
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 944 NDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHG----E 999
N + ++W+ + L + G L I DV L DSG YTCK H
Sbjct: 26 NRTDVELQWYKDSVLLDKDNEKFYSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84
Query: 1000 ATTSCKLTVKG 1010
T KL +
Sbjct: 85 ITRIIKLRIVK 95
Score = 29.7 bits (67), Expect = 3.7
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 1743 PSFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLI 1802
P L T +S + L+ F +++ W K+ + D + + + L I
Sbjct: 4 PQILFTSTSGKLVCPDLSDF---TINRTDVELQWYKDSVLLDKDNEKFYSLKGSTY-LHI 59
Query: 1803 IEAVVEDSGAYECV 1816
I+ + DSG Y C
Sbjct: 60 IDVSLNDSGYYTCK 73
Score = 29.3 bits (66), Expect = 5.4
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 4 RADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCK 53
+++++W+K+ V L + + G L I + +DS YTCK
Sbjct: 25 INRTDVELQWYKDSVLLDKDNE-KFYSLKGSTYLHIIDVSLNDSGYYTCK 73
>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like:
domain similar to the third immunoglobulin (Ig)-like
domain of the L1 cell adhesion molecule (CAM). L1 belongs
to the L1 subfamily of cell adhesion molecules (CAMs) and
is comprised of an extracellular region having six
Ig-like domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. L1 is
primarily expressed in the nervous system and is involved
in its development and function. L1 is associated with an
X-linked recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM
and human neurofascin.
Length = 71
Score = 34.3 bits (79), Expect = 0.060
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 1773 DVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVV 1832
++ W+K G ++ D +T E+ TL I ED G Y C A N+ G AR + V
Sbjct: 14 EISWIKIGGELPAD---RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70
Query: 1833 Q 1833
+
Sbjct: 71 E 71
Score = 32.7 bits (75), Expect = 0.16
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 946 PSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKHGEATTSCK 1005
P+ + W G L A R K N F L+I++V D G Y C A+N G A +
Sbjct: 11 PTPEISWIKIGGELPAD-RTKFEN-FNKT-LKIDNVSEEDDGEYRCTASNSLGSARHTIS 67
Query: 1006 LTVK 1009
+TV+
Sbjct: 68 VTVE 71
Score = 31.2 bits (71), Expect = 0.70
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 534 PTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTAMTKAK 593
PT I W G R K +F +L +D V D GEY C A+N G+A
Sbjct: 11 PTPEISWIKIGGELPAD-RTKF-ENFN-KTLKIDNVSEEDDGEYRCTASNSLGSAR---- 63
Query: 594 VICKVLTVIVE 604
++V VE
Sbjct: 64 ---HTISVTVE 71
Score = 31.2 bits (71), Expect = 0.71
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 1084 PTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVYARDSGEYICRATNKWGTA 1138
PT I W G R K +F +L +D V D GEY C A+N G+A
Sbjct: 11 PTPEISWIKIGGELPAD-RTKF-ENFN-KTLKIDNVSEEDDGEYRCTASNSLGSA 62
Score = 30.8 bits (70), Expect = 0.89
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 1664 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 1723
+G P P I W + + P + + L + V ED G + A N G A+
Sbjct: 8 EGLPTPEISWIKIGGEL---PADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARH 64
Query: 1724 SANLVVE 1730
+ ++ VE
Sbjct: 65 TISVTVE 71
Score = 30.4 bits (69), Expect = 1.2
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVSTCT 66
P +I W K G L R+ F+ TL I+++ +D Y C A+N LG A T +
Sbjct: 11 PTPEISWIKIGGELPAD---RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTIS 67
Query: 67 LKIE 70
+ +E
Sbjct: 68 VTVE 71
Score = 29.6 bits (67), Expect = 2.4
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 237 PFTEWFVNNKPLPAGAKFKTTHDFGYVALDIVGAYAEDSGIYTVKATNSKGSAT 290
P W LPA +T + L I ED G Y A+NS GSA
Sbjct: 13 PEISWIKIGGELPAD---RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR 63
>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5.
Ig1_Contactin-5: First Ig domain of the neural cell
adhesion molecule contactin-5. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains, anchored to the membrane by
glycosylphosphatidylinositol. The different contactins
show different expression patterns in the central nervous
system. In rats, a lack of contactin-5 (NB-2) results in
an impairment of the neuronal activity in the auditory
system. Contactin-5 is expressed specifically in the
postnatal nervous system, peaking at about 3 weeks
postnatal. Contactin-5 is highly expressed in the adult
human brain in the occipital lobe and in the amygdala;
lower levels of expression have been detected in the
corpus callosum, caudate nucleus, and spinal cord.
Length = 94
Score = 34.9 bits (80), Expect = 0.062
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 1054 PVFTSQLQD---NLDVPEAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFG 1110
PVF + D D E KV +C PT R W NG + + T D+
Sbjct: 2 PVFVQEPDDAIFPTDSDEK-KVILNCEARGNPVPTYR--WLRNG------TEIDTESDYR 52
Query: 1111 FISLDMDYVY-----ARDSGEYICRATNKWGTAMTKAKVI 1145
+ +D + + +DSG Y C ATN G+ +++ ++
Sbjct: 53 YSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92
Score = 33.0 bits (75), Expect = 0.24
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEA 61
E R +P W +NG + S R + G + +S N DS Y C ATN +G
Sbjct: 27 EARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIIS-NPSEVKDSGRYQCLATNSIGSI 85
Query: 62 VS 63
+S
Sbjct: 86 LS 87
Score = 33.0 bits (75), Expect = 0.24
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 521 KVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTVYDFGFISLDMDYVY-----ARDSG 575
KV +C PT R W NG + + T D+ + +D + + +DSG
Sbjct: 21 KVILNCEARGNPVPTYR--WLRNG------TEIDTESDYRYSLIDGNLIISNPSEVKDSG 72
Query: 576 EYICRATNKWGTAMTKAKVI 595
Y C ATN G+ +++ ++
Sbjct: 73 RYQCLATNSIGSILSREALL 92
Score = 30.3 bits (68), Expect = 2.4
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 728 EARLTPTDDPKLKVEWFWNGKPMKTGSRFR-TFCDFGFVILEISPVYPEDCGQYSCRAYN 786
EAR P P + W NG + T S +R + D +I S V +D G+Y C A N
Sbjct: 27 EARGNPV--PTYR--WLRNGTEIDTESDYRYSLIDGNLIISNPSEV--KDSGRYQCLATN 80
Query: 787 DYG 789
G
Sbjct: 81 SIG 83
Score = 29.9 bits (67), Expect = 2.8
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1662 EFDGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG 1719
E G+P+PT +W R I + D++ ++ +++I ++DSG + +A N G
Sbjct: 27 EARGNPVPTYRWLRNGTEIDTESDYR-YSLIDGNLIISNPSEVKDSGRYQCLATNSIG 83
Score = 29.9 bits (67), Expect = 3.3
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 1771 PLDVY-WLKNGKKII--PDIRYKTLEEDNLFTLLIIEAV-VEDSGAYECVAMNNAG 1822
P+ Y WL+NG +I D RY ++ L+I V+DSG Y+C+A N+ G
Sbjct: 32 PVPTYRWLRNGTEIDTESDYRYSLIDG----NLIISNPSEVKDSGRYQCLATNSIG 83
>gnl|CDD|143236 cd05759, Ig2_KIRREL3-like, Second immunoglobulin (Ig)-like domain
of Kirrel (kin of irregular chiasm-like) 3 (also known
as Neph2). Ig2_KIRREL3-like: domain similar to the
second immunoglobulin (Ig)-like domain of Kirrel (kin
of irregular chiasm-like) 3 (also known as Neph2). This
protein has five Ig-like domains, one transmembrane
domain, and a cytoplasmic tail. Included in this group
is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and
Drosophila RST (irregular chiasm C-roughest) protein.
These proteins contain multiple Ig domains, have
properties of cell adhesion molecules, and are
important in organ development.
Length = 82
Score = 34.3 bits (79), Expect = 0.063
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 5 ADPNLKIEWFKNGVPLS--------LGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATN 56
A P +I WF++G L L R T + TL I D +TC+A N
Sbjct: 11 AKPAAEIIWFRDGEVLDGATYSKELLKDGKRET---TVSTLPITPSDHDTGRTFTCRARN 67
Query: 57 L 57
Sbjct: 68 E 68
>gnl|CDD|143274 cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-like domain of
neural cell adhesion molecule NCAM-2. Ig1_NCAM-2:
first immunoglobulin (Ig)-like domain of neural cell
adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2
is organized similarly to NCAM , including five
N-terminal Ig-like domains and two fibronectin type III
domains. NCAM-2 is differentially expressed in the
developing and mature olfactory epithelium (OE), and may
function like NCAM, as an adhesion molecule.
Length = 92
Score = 34.2 bits (78), Expect = 0.077
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 320 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-LEILGTKIEDT 378
LS GE F + I G+ + G+ I +S R+ V G+ L I IED
Sbjct: 12 LSVGESKFFTCTAI--GEPESIDWYNPQGEKIVSSQRV-VVQKEGVRSRLTIYNANIEDA 68
Query: 379 GVYTCRATNKWGQA-EISVNLE 399
G+Y C+AT+ GQ E +V LE
Sbjct: 69 GIYRCQATDAKGQTQEATVVLE 90
Score = 32.7 bits (74), Expect = 0.33
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 1748 TISSAVINVGQLARFDAKISATKPLDVYWLK-NGKKIIPDIRYKTLEEDNLFTLLIIEAV 1806
++S ++VG+ ++F + +P + W G+KI+ R +E L I A
Sbjct: 6 SLSKVELSVGE-SKFFTCTAIGEPESIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNAN 64
Query: 1807 VEDSGAYECVAMNNAGEARCEAELVVQ 1833
+ED+G Y C A + G+ + EA +V++
Sbjct: 65 IEDAGIYRCQATDAKGQTQ-EATVVLE 90
Score = 30.8 bits (69), Expect = 1.6
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 925 DLTLAESTLAHFECRLTPTNDPSMTVEWFH-NGKALSAGSRIKTINDFGFVILEINDVYL 983
+L++ ES F C T +P +++W++ G+ + + R+ + L I + +
Sbjct: 11 ELSVGESKF--FTC--TAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANI 65
Query: 984 RDSGLYTCKATNKHGE 999
D+G+Y C+AT+ G+
Sbjct: 66 EDAGIYRCQATDAKGQ 81
>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig1_Neogenin: first
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of
vertebrate embryos in the growing nerve cells. It is
also expressed in other embryonic tissues, and may play
a general role in developmental processes such as cell
migration, cell-cell recognition, and tissue growth
regulation. Included in this group is the tumor
suppressor protein DCC, which is deleted in colorectal
carcinoma . DCC and neogenin each have four Ig-like
domains followed by six fibronectin type III domains, a
transmembrane domain, and an intracellular domain.
Length = 95
Score = 34.4 bits (79), Expect = 0.096
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 5 ADPNLKIEWFKNGVPLSLGSRIR--STFDFGLVTLSINSLRAD--DSAIYTCKATN-LLG 59
+P KIEW K+GV L+L S R + L+ S+ + + D Y C A N LG
Sbjct: 25 GEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLG 84
Query: 60 EAVS 63
VS
Sbjct: 85 SIVS 88
Score = 29.8 bits (67), Expect = 3.3
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 1744 SFLTTISSAVINVGQLARFDAKISATKPLDVYWLKNGKKI--IPDIRYKTLEEDNLFTLL 1801
FL+ S V G + P + W K+G + + D R + L +L
Sbjct: 1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSL---- 56
Query: 1802 IIEAVVE------DSGAYECVAMN 1819
+I +VV D G Y+CVA N
Sbjct: 57 LITSVVHSKHNKPDEGFYQCVAQN 80
>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural
Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas
II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin
(Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2
(also known as OCAM/mamFas II and RNCAM). NCAM-2 is
organized similarly to NCAM , including five N-terminal
Ig-like domains and two fibronectin type III domains.
NCAM-2 is differentially expressed in the developing and
mature olfactory epithelium (OE), and may function like
NCAM, as an adhesion molecule.
Length = 98
Score = 33.8 bits (77), Expect = 0.13
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 1651 AFEQDQARFEVEFDGDPLPTIKWFREDFPIT-----SSPDFQIHTFST--KSILIMRQVF 1703
E A + +G+P+P I W R T SPD +I +S L ++ V
Sbjct: 13 TVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVK 72
Query: 1704 MEDSGVFAVIAENR-GGKAK 1722
+ DSG + A +R GG K
Sbjct: 73 LSDSGRYDCEAASRIGGHQK 92
>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1
cell adhesion molecule (CAM). Ig3_L1-CAM: third
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains, five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in the
nervous system and is involved in its development and
function. L1 is associated with an X-linked recessive
disorder, X-linked hydrocephalus, MASA syndrome, or
spastic paraplegia type 1, that involves abnormalities of
axonal growth. This group also contains the chicken
neuron-glia cell adhesion molecule, Ng-CAM.
Length = 71
Score = 33.4 bits (76), Expect = 0.13
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 1664 DGDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGGKAKC 1723
+G P P + W R D P+ SP+ + K++ + V D G + AEN G A+
Sbjct: 8 EGLPTPEVHWDRIDGPL--SPNRTKKLNNNKTLQLDN-VLESDDGEYVCTAENSEGSARH 64
Query: 1724 SANLVVE 1730
+ VE
Sbjct: 65 HYTVTVE 71
Score = 29.5 bits (66), Expect = 2.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 1774 VYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNNAGEAR 1825
V+W + + P+ +T + +N TL + + D G Y C A N+ G AR
Sbjct: 15 VHWDRIDGPLSPN---RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSAR 63
>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain
of the L1 cell adhesion molecule (CAM).
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like
domain of the L1 cell adhesion molecule (CAM). L1 is
comprised of an extracellular region having six Ig-like
domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. L1 is
primarily expressed in the nervous system and is
involved in its development and function. L1 is
associated with an X-linked recessive disorder,
X-linked hydrocephalus, MASA syndrome, or spastic
paraplegia type 1, that involves abnormalities of
axonal growth. This group also contains the chicken
neuron-glia cell adhesion molecule, Ng-CAM.
Length = 76
Score = 33.3 bits (76), Expect = 0.14
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 1 VEPRADPNLKIEWFKNGVPLS-LGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLG 59
VE PN I W NG P+ R G L + ++ D+A+Y C+A N G
Sbjct: 10 VEGIPTPN--ITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHG 65
Score = 32.2 bits (73), Expect = 0.39
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 1577 GEPARFCTRVTGYPRPRVMWLINGHTI 1603
GE AR +V G P P + W ING I
Sbjct: 1 GETARLDCQVEGIPTPNITWSINGAPI 27
Score = 31.8 bits (72), Expect = 0.42
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 1657 ARFEVEFDGDPLPTIKWFREDFPITSS-PDFQIHTFSTKSILIMRQVFMEDSGVFAVIAE 1715
AR + + +G P P I W PI + PD + H + LI+ V D+ V+ A
Sbjct: 4 ARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEAR 61
Query: 1716 NRGG 1719
NR G
Sbjct: 62 NRHG 65
>gnl|CDD|143167 cd00099, IgV, Immunoglobulin variable domain (IgV). IgV:
Immunoglobulin variable domain (IgV). Members of the
IgV family are components of immunoglobulin (Ig) and T
cell receptors. The basic structure of Ig molecules is
a tetramer of two light chains and two heavy chains
linked by disulfide bonds. In Ig, each chain is
composed of one variable domain (IgV) and one or more
constant domains (IgC); these names reflect the fact
that the variability in sequences is higher in the
variable domain than in the constant domain. Within the
variable domain, there are regions of even more
variability called the hypervariable or
complementarity-determining regions (CDRs) which are
responsible for antigen binding. A predominant feature
of most Ig domains is the disulfide bridge connecting 2
beta-sheets with a tryptophan residue packed against
the disulfide bond.
Length = 105
Score = 33.8 bits (78), Expect = 0.17
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 23 GSRIRSTFDFGLVTLSINSLRADDSAIYTCKAT 55
G+R S F TL+I+SL+ +DSA+Y C +
Sbjct: 58 GTRDSSKSSF---TLTISSLQPEDSAVYYCAVS 87
Score = 32.7 bits (75), Expect = 0.42
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 13/54 (24%)
Query: 962 GSRIKTINDFGFVILEINDVYLRDSGLYTCKATNKH-------GEATTSCKLTV 1008
G+R + + F L I+ + DS +Y C + G+ T +LTV
Sbjct: 58 GTRDSSKSSF---TLTISSLQPEDSAVYYCAVSLSGGTYKLYFGQGT---RLTV 105
>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain
of fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second
immunoglobulin (Ig)-like domain of fibroblast growth
factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is
comprised of a signal peptide, three extracellular
Ig-like modules, a transmembrane segment, and a short
intracellular domain. FGFRL1 is expressed
preferentially in skeletal tissues. Similar to FGF
receptors, the expressed protein interacts specifically
with heparin and with FGF2. FGFRL1 does not have a
protein tyrosine kinase domain at its C terminus;
neither does its cytoplasmic domain appear to interact
with a signaling partner. It has been suggested that
FGFRL1 may not have any direct signaling function, but
instead acts as a decoy receptor trapping FGFs and
preventing them from binding other receptors.
Length = 82
Score = 32.9 bits (75), Expect = 0.19
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 3 PRADPNLKIEWFKNGVPLS---LGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLG 59
PR D I W K+ PL+ +G + + TLS+ +L+ +DS YTC +N G
Sbjct: 22 PRPD----ITWLKDNKPLTPTEIGESRKKKW-----TLSLKNLKPEDSGKYTCHVSNRAG 72
Query: 60 EAVST 64
E +T
Sbjct: 73 EINAT 77
Score = 31.7 bits (72), Expect = 0.58
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 1756 VGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYEC 1815
VG R S D+ WLK+ K + P ++ ++ +TL + EDSG Y C
Sbjct: 8 VGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKK--WTLSLKNLKPEDSGKYTC 65
Query: 1816 VAMNNAGE 1823
N AGE
Sbjct: 66 HVSNRAGE 73
Score = 30.6 bits (69), Expect = 1.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 1340 SLDIDYVYPEDQGEYVCRAYNDHGE 1364
+L + + PED G+Y C N GE
Sbjct: 49 TLSLKNLKPEDSGKYTCHVSNRAGE 73
Score = 29.4 bits (66), Expect = 3.5
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 1453 GDPNMKVEWFLNGKPL-PHKNRFNPIYDFGYVAMNFGWVYPEDSGEYLCRATNLYG 1507
G+P + W + KPL P + + + ++ + PEDSG+Y C +N G
Sbjct: 20 GNPRPDITWLKDNKPLTPTEIGESRKKKW---TLSLKNLKPEDSGKYTCHVSNRAG 72
>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM) and similar
proteins. Ig6_L1-CAM_like: domain similar to the sixth
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains and five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
NrCAM [Ng(neuronglia)CAM-related cell adhesion
molecule], which is primarily expressed in the nervous
system, and human neurofascin.
Length = 77
Score = 32.7 bits (75), Expect = 0.21
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 529 EPKSDPTMRIDWFFNGRPFATGS--RVKTVYDFGFISLD-MDYVYARD-SGEYICRATNK 584
E K +P W NG F RV D G + +D M+ A D GEY C A+N+
Sbjct: 6 EAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNE 65
Query: 585 WGTAMTK 591
GTA++
Sbjct: 66 LGTAISN 72
Score = 32.7 bits (75), Expect = 0.21
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 1079 EPKSDPTMRIDWFFNGRPFATGS--RVKTVYDFGFISLD-MDYVYARD-SGEYICRATNK 1134
E K +P W NG F RV D G + +D M+ A D GEY C A+N+
Sbjct: 6 EAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNE 65
Query: 1135 WGTAMTK 1141
GTA++
Sbjct: 66 LGTAISN 72
Score = 32.4 bits (74), Expect = 0.27
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 2 EPRADPNLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSI---NSLRADD-SAIYTCKATNL 57
E + +P W +NG R T TL I N RA+D Y C A+N
Sbjct: 6 EAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNE 65
Query: 58 LGEAVS 63
LG A+S
Sbjct: 66 LGTAIS 71
>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain. This domain is
found in antibodies as well as neural protein P0 and
CTL4 amongst others.
Length = 114
Score = 33.7 bits (77), Expect = 0.24
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 25 RIRSTFDFGLVTLSINSLRADDSAIYTCKATN 56
+ +L+I++LR DS YTC +N
Sbjct: 69 TLSGNGSKNDFSLTISNLRLSDSGTYTCAVSN 100
Score = 29.9 bits (67), Expect = 5.2
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 22/91 (24%)
Query: 424 GDSAHFECTLTPVNDPELKVEWF-------------------HNGKPIFHKNRVKMVSD- 463
G S C+ + + V W+ + K RV + +
Sbjct: 16 GGSVTLPCSFSS-SSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTLSGNG 74
Query: 464 -FGFVVMDIAYVQSHDSGEYVCRAWNNFIFI 493
+ I+ ++ DSG Y C N +
Sbjct: 75 SKNDFSLTISNLRLSDSGTYTCAVSNPNELV 105
>gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk
receptor TrkB. TrkB_d5: the fifth domain of Trk
receptor TrkB, this is an immunoglobulin (Ig)-like
domain which binds to neurotrophin. The Trk family of
receptors are tyrosine kinase receptors, which mediate
the trophic effects of the neurotrophin Nerve growth
factor (NGF) family. The Trks are activated by
dimerization, leading to autophosphorylation of
intracellular tyrosine residues, and triggering the
signal transduction pathway. TrkB shares significant
sequence homology and domain organization with TrkA, and
TrkC. The first three domains are leucine-rich domains.
The fourth and fifth domains are Ig-like domains playing
a part in ligand binding. TrKB is recognized by
brain-derived neurotrophic factor (BDNF) and
neurotrophin (NT)-4. In some cell systems NT-3 can
activate TrkA and TrkB receptors. TrKB transcripts are
found throughout multiple structures of the central and
peripheral nervous systems.
Length = 79
Score = 32.5 bits (74), Expect = 0.28
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 941 TPTNDPSMTVEWFHNGKALSAGSRIKT-INDFGFV----ILEINDVYLRDSGLYTCKATN 995
T +P T++WFH G L+ I T I+ L++++ ++G+YT A N
Sbjct: 6 TVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKN 65
Query: 996 KHGE 999
++GE
Sbjct: 66 EYGE 69
>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction pathway.
TrkA, TrkB, and TrkC share significant sequence homology
and domain organization. The first three domains are
leucine-rich domains. The fourth and fifth domains are
Ig-like domains playing a part in ligand binding. TrkA,
Band C mediate the trophic effects of the neurotrophin
Nerve growth factor (NGF) family. TrkA is recognized by
NGF. TrkB is recognized by brain-derived neurotrophic
factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized
by NT-3. NT-3 is promiscuous as in some cell systems it
activates TrkA and TrkB receptors. TrkA is a receptor
found in all major NGF targets, including the
sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous systems.
The TrkC gene is expressed throughout the mammalian
nervous system.
Length = 81
Score = 32.4 bits (74), Expect = 0.35
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 940 LTPTNDPSMTVEWFHNGKALSAGSRIKT----INDFGFVI---LEINDVYLRDSGLYTCK 992
T +P T+ W+HNG L+ I+T L+ ++ ++G YT
Sbjct: 5 FTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLV 64
Query: 993 ATNKHGEATTS 1003
A+N++G+ + S
Sbjct: 65 ASNEYGQDSKS 75
Score = 31.2 bits (71), Expect = 0.70
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 336 GDQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILG-------TKIEDTGVYTCRATN 387
G+ T+ + +NG + S IRT +H E G T + + G YT A+N
Sbjct: 9 GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHV-NNGNYTLVASN 67
Query: 388 KWGQAEISVN 397
++GQ S++
Sbjct: 68 EYGQDSKSIS 77
Score = 29.7 bits (67), Expect = 2.8
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 1586 VTGYPRPRVMWLINGHTIVNE---IVRKITATETTEMEHKG 1623
V G P+P + W NG ++NE I +I TT E+ G
Sbjct: 7 VRGNPKPTLTWYHNG-AVLNESDYIRTEIHYEVTTPTEYHG 46
Score = 29.3 bits (66), Expect = 3.7
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 603 VEWFYNGKKLPHGHRYRT-FHD--------FGIVILDILYCYEENSGVYECRATNKYGSD 653
+ W++NG L RT H G + D N+G Y A+N+YG D
Sbjct: 15 LTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHV--NNGNYTLVASNEYGQD 72
Score = 28.5 bits (64), Expect = 6.6
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 21/72 (29%)
Query: 1453 GDPNMKVEWFLNGKPLPHKNRFNPIYDFGYVAM----NFGWVY--------PE--DSGEY 1498
G+P + W+ NG L D+ + Y P ++G Y
Sbjct: 9 GNPKPTLTWYHNGAVLNE-------SDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNY 61
Query: 1499 LCRATNLYGMDE 1510
A+N YG D
Sbjct: 62 TLVASNEYGQDS 73
>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
Ig-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains.
Length = 74
Score = 31.9 bits (72), Expect = 0.38
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 6 DPNLKIEWFKNGVPLSLGSRIR-STFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
+P+ +I WFK+ +P+ S R G L I + D Y C ATN G S
Sbjct: 10 NPDPEITWFKDFLPVDTTSNGRIKQLRSGA--LQIENSEESDQGKYECVATNSAGTRYS 66
Score = 30.0 bits (67), Expect = 1.9
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 1665 GDPLPTIKWFREDFPITSSPDFQIHTFSTKSILIMRQVFMEDSGVFAVIAENRGG-KAKC 1723
G+P P I WF++ P+ ++ + +I + L + D G + +A N G +
Sbjct: 9 GNPDPEITWFKDFLPVDTTSNGRIKQLRS-GALQIENSEESDQGKYECVATNSAGTRYSA 67
Query: 1724 SANLVV 1729
ANL V
Sbjct: 68 PANLYV 73
>gnl|CDD|143270 cd05862, Ig1_VEGFR, First immunoglobulin (Ig)-like domain of
vascular endothelial growth factor (VEGF) receptor(R).
IG1_VEGFR: first immunoglobulin (Ig)-like domain of
vascular endothelial growth factor (VEGF) receptor(R).
The VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and
VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds
more weakly. VEGFR-3 appears not to bind VEGF, but binds
other members of the VEGF family (VEGF-C and -D). VEGFRs
bind VEGFs with high affinity with the IG-like domains.
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGFR-2 is a major mediator of the
mitogenic, angiogenic and microvascular
permeability-enhancing effects of VEGF-A. VEGFR-1 may
play an inhibitory part in these processes by binding
VEGF and interfering with its interaction with VEGFR-2.
VEGFR-1 has a signaling role in mediating monocyte
chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and
a survival signal in hematopoietic stem cells or
leukemia cells. VEGFR-3 has been shown to be involved in
tumor angiogenesis and growth.
Length = 86
Score = 32.1 bits (73), Expect = 0.40
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 975 ILEINDVYLRDSGLYTCKATN 995
L I +V L D G YTC A++
Sbjct: 51 TLTIENVTLSDLGRYTCTASS 71
>gnl|CDD|143281 cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like domain of the class
IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin
(Ig)-like domain of Sema4D. Sema4D is a Class IV
semaphorin. Semaphorins are classified based on
structural features additional to the Sema domain. Sema4D
has extracellular Sema and Ig domains, a transmembrane
domain, and a short cytoplasmic domain. Sema4D plays a
part in the development of GABAergic synapses. Sema4D in
addition is an immune semaphorin. It is abundant on
resting T cells; its expression is weak on resting B
cells and antigen presenting cells (APCs), but is
upregulated by various stimuli. The receptor used by
Sema4D in the immune system is CD72. Sem4D enhances the
activation of B cells and DCs through binding CD72,
perhaps by reducing CD72s inhibitory signals. The
receptor used by Sema4D in the non-lymphatic tissues is
plexin-B1. Sem4D is anchored to the cell surface but its
extracellular domain can be released from the cell
surface by a metalloprotease-dependent process. Sem4D may
mediate its effects in its membrane bound form, and/or
its cleaved form.
Length = 87
Score = 32.1 bits (73), Expect = 0.41
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 1774 VYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVA 1817
V W +GK + P+ L D L LI A D+G Y+C++
Sbjct: 27 VVWKFDGKVLTPESAKYLLYRDGL---LIFNASEADAGRYQCLS 67
>gnl|CDD|147445 pfam05250, UPF0193, Uncharacterized protein family (UPF0193). This
family of proteins is functionally uncharacterized.
Length = 212
Score = 34.2 bits (78), Expect = 0.45
Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 8/131 (6%)
Query: 1143 KVICK-AKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQ 1201
KV+ + +K + Q+ D + + + K E+ ++ + R N + +
Sbjct: 32 KVLMEESKLTNLQRRQINDHLRNGEPLPVPKEPKFEQEYDNTLAMADRRKNIKKRSLRTI 91
Query: 1202 SAWYDSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKEL-EKNYTPEEIEEDEI 1260
++ +Y+ E E EK +L ++M+ + + + P E+E+
Sbjct: 92 EESGAFDVEKYRPADNKEPGEKEK------RKLQNTMAGTHIPDPGIRKRVPRRRSEEEM 145
Query: 1261 PEEPPRFITEI 1271
E+
Sbjct: 146 DVTEEDRFDEL 156
>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). Ig4_ NrCAM:
fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). NrCAM belongs to
the L1 subfamily of cell adhesion molecules (CAMs) and is
comprised of an extracellular region having six IG-like
domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. NrCAM
is primarily expressed in the nervous system.
Length = 76
Score = 31.5 bits (71), Expect = 0.58
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 1577 GEPARFCTRVTGYPRPRVMWLINGHTI 1603
GE R G P+P + WL NG I
Sbjct: 1 GEDGTLICRANGNPKPSISWLTNGVPI 27
>gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of
platelet-derived growth factor receptor (PDGFR) alpha.
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like
domain of platelet-derived growth factor receptor (PDGFR)
alpha. PDGF is a potent mitogen for connective tissue
cells. PDGF-stimulated processes are mediated by three
different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to
all three PDGFs, whereas the PDGFR beta (not included in
this group) binds only to PDGF-B. PDGF alpha is organized
as an extracellular component having five Ig-like
domains, a transmembrane segment, and a cytoplasmic
portion having protein tyrosine kinase activity. In mice,
PDGFR alpha and PDGFR beta are essential for normal
development.
Length = 101
Score = 32.1 bits (73), Expect = 0.59
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 1762 FDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLF------TLLIIEAVVEDSGAYEC 1815
F ++ A P + WLK+ + +I ++ T E N+ L +I A EDSG Y
Sbjct: 23 FVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTA 82
Query: 1816 VAMNNAGEARCEAELVVQ 1833
+A N L +Q
Sbjct: 83 LAQNEDAVKSYTFALQIQ 100
Score = 30.6 bits (69), Expect = 2.1
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 1659 FEVEFDGDPLPTIKWFREDFPITSSPD---FQIHTFST---KSILIMRQVFMEDSGVFAV 1712
F VE + P P I+W +++ + + H S L + + EDSG++
Sbjct: 23 FVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTA 82
Query: 1713 IAEN 1716
+A+N
Sbjct: 83 LAQN 86
>gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin.
Ig6_Contactin_like: Sixth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5 is
expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack of
contactin-5 (NB-2) results in an impairment of neur onal
act ivity in the rat auditory system. Contactin-5 is
highly expressed in the adult human brain in the
occipital lobe and in the amygdala. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 85
Score = 31.7 bits (72), Expect = 0.60
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 16/77 (20%)
Query: 945 DPSM--TVEWFHNGKAL---------SAGSRIKTINDFGFVILEINDVYLRDSGLYTCKA 993
DP++ T W NG + + D L I + L+ +G YTC A
Sbjct: 12 DPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGD-----LMIRNAQLKHAGKYTCTA 66
Query: 994 TNKHGEATTSCKLTVKG 1010
+ S L V+G
Sbjct: 67 QTVVDSLSASADLIVRG 83
>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays
important roles in the development and regeneration of
the central nervous system, in synaptogenesis and neural
migration. NCAM mediates cell-cell and cell-substratum
recognition and adhesion via homophilic (NCAM-NCAM) and
heterophilic (NCAM-non-NCAM) interactions. NCAM is
expressed as three major isoforms having different
intracellular extensions. The extracellular portion of
NCAM has five N-terminal Ig-like domains and two
fibronectin type III domains. The double zipper adhesion
complex model for NCAM homophilic binding involves Ig1,
Ig2, and Ig3. By this model, Ig1 and Ig2 mediate
dimerization of NCAM molecules situated on the same cell
surface (cis interactions), and Ig3 domains mediate
interactions between NCAM molecules expressed on the
surface of opposing cells (trans interactions), through
binding to the Ig1 and Ig2 domains. The adhesive ability
of NCAM is modulated by the addition of polysialic acid
chains to the fifth Ig-like domain.
Length = 97
Score = 31.9 bits (72), Expect = 0.65
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 529 EPKSDPTMRIDWFFNGRPFATGS-----RVKTVYDFGFISLDMDYVYARDSGEYICRATN 583
E DP I W + R ++ + SL + Y+ D+GEY+C A+N
Sbjct: 25 EASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASN 84
Query: 584 KWGTAM 589
G
Sbjct: 85 TIGQDS 90
Score = 31.9 bits (72), Expect = 0.65
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 1079 EPKSDPTMRIDWFFNGRPFATGS-----RVKTVYDFGFISLDMDYVYARDSGEYICRATN 1133
E DP I W + R ++ + SL + Y+ D+GEY+C A+N
Sbjct: 25 EASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASN 84
Query: 1134 KWGTAM 1139
G
Sbjct: 85 TIGQDS 90
>gnl|CDD|165173 PHA02826, PHA02826, IL-1 receptor-like protein; Provisional.
Length = 227
Score = 33.7 bits (77), Expect = 0.74
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 930 ESTLAHFECRLTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLY 989
+S L + + T+ W+ NG + RI+ N+ L I DSG+Y
Sbjct: 146 DSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNN--NSTLVIKSATHDDSGIY 203
Query: 990 TC 991
TC
Sbjct: 204 TC 205
Score = 33.0 bits (75), Expect = 1.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 8 NLKIEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTC 52
+ + W+KNG + RI+ + TL I S DDS IYTC
Sbjct: 163 DYTLTWYKNGNIVLYTDRIQLRNN--NSTLVIKSATHDDSGIYTC 205
Score = 31.8 bits (72), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 1776 WLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYEC 1815
W KNG ++ R + L +N TL+I A +DSG Y C
Sbjct: 168 WYKNGNIVLYTDRIQ-LRNNNS-TLVIKSATHDDSGIYTC 205
>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction pathway.
TrkA, TrkB, and TrkC share significant sequence homology
and domain organization. The first three domains are
leucine-rich domains. The fourth and fifth domains are
Ig-like domains playing a part in ligand binding. TrkA,
Band C mediate the trophic effects of the neurotrophin
Nerve growth factor (NGF) family. TrkA is recognized by
NGF. TrKB is recognized by brain-derived neurotrophic
factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized
by NT-3. NT-3 is promiscuous as in some cell systems it
activates TrkA and TrkB receptors. TrkA is a receptor
found in all major NGF targets, including the
sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous systems.
The TrkC gene is expressed throughout the mammalian
nervous system.
Length = 90
Score = 31.3 bits (71), Expect = 0.82
Identities = 15/82 (18%), Positives = 27/82 (32%)
Query: 1751 SAVINVGQLARFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDS 1810
+ V+ G A + V W+ G +I +++ L + E
Sbjct: 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQ 68
Query: 1811 GAYECVAMNNAGEARCEAELVV 1832
C A N G+A ++ V
Sbjct: 69 TTVTCTAENPVGQANVSVQVTV 90
Score = 30.6 bits (69), Expect = 1.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 1566 VSQPEAQKVQEGEPARFCTRVTGYPRPRVMWLING 1600
V P A V EG A G P P+V W+I G
Sbjct: 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAG 38
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 34.3 bits (79), Expect = 0.88
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 1165 EKLKELEK---NYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANEST 1221
E+L EL K E +EE E E L + Y + + + EL +KE
Sbjct: 570 EELAELLKELEELGFESVEELE--ERLKEL-EPFYNEYLELKDAEKELEREEKELKKLEE 626
Query: 1222 ELEKHDIVTESQLPDSMSA-----EKLKELEKNYTPEEIEE 1257
EL+K +L ++ ++L+ELEK Y+ EE EE
Sbjct: 627 ELDK----AFEELAETEKRLEELRKELEELEKKYSEEEYEE 663
>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of
carcinoembryonic antigen (CEA) related cell adhesion
molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin
(Ig)-like domain 4 in carcinoembryonic antigen (CEA)
related cell adhesion molecule (CEACAM) protein
subfamily. The CEA family is a group of anchored or
secreted glycoproteins, expressed by epithelial cells,
leukocytes, endothelial cells and placenta. The CEA
family is divided into the CEACAM and
pregnancy-specific glycoprotein (PSG) subfamilies. This
group represents the CEACAM subfamily. CEACAM1 has many
important cellular functions, it is a cell adhesion
molecule, and a signaling molecule that regulates the
growth of tumor cells, it is an angiogenic factor, and
is a receptor for bacterial and viral pathogens,
including mouse hepatitis virus (MHV). In mice, four
isoforms of CEACAM1 generated by alternative splicing
have either two [D1, D4] or four [D1-D4] Ig-like
domains on the cell surface. This family corresponds to
the D4 Ig-like domain.
Length = 91
Score = 31.5 bits (71), Expect = 0.91
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 11 IEWFKNGVPLSLGSRIRSTFDFGLVTLSINSLRADDSAIYTCKATNLLGEAVS 63
I W NG L R TL+ N++ D+ Y C+A+N + S
Sbjct: 34 IWWVNNGSLLVPP---RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83
>gnl|CDD|219744 pfam08204, V-set_CD47, CD47 immunoglobulin-like domain. This
family represents the CD47 leukocyte antigen V-set like
Ig domain.
Length = 93
Score = 31.3 bits (71), Expect = 1.0
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 430 ECTLTPV---NDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 486
C + + N E+ V+W N K IF N +S F D G Y C
Sbjct: 21 PCDVDNLEYNNISEVHVKWKFNNKDIFIFNGTNNISTLKFDFSDALS------GNYTCEV 74
Query: 487 WNNF 490
F
Sbjct: 75 TELF 78
Score = 29.3 bits (66), Expect = 4.5
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 940 LTPTNDPSMTVEWFHNGKALSAGSRIKTINDFGFVILEINDVYLRDSGLYTCKATNK--H 997
L N + V+W N K + + N+ + + +D L SG YTC+ T
Sbjct: 27 LEYNNISEVHVKWKFNNKDIFIFN---GTNNISTLKFDFSD-AL--SGNYTCEVTELFNE 80
Query: 998 GEATTSCKLTVK 1009
G+ T K V
Sbjct: 81 GKTTIELKYVVS 92
Score = 29.0 bits (65), Expect = 5.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 153 NDPELKVEWFHNGKPIFHKN 172
N E+ V+W N K IF N
Sbjct: 31 NISEVHVKWKFNNKDIFIFN 50
>gnl|CDD|143190 cd05713, Ig_MOG_like, Immunoglobulin (Ig)-like domain of myelin
oligodendrocyte glycoprotein (MOG). Ig_MOG_like:
immunoglobulin (Ig)-like domain of myelin oligodendrocyte
glycoprotein (MOG). MOG, a minor component of the myelin
sheath, is an important CNS-specific autoantigen, linked
to the pathogenesis of multiple sclerosis (MS) and
experimental autoimmune encephalomyelitis (EAE). It is a
transmembrane protein having an extracellular Ig domain.
MOG is expressed in the CNS on the outermost lamellae of
the myelin sheath, and on the surface of
oligodendrocytes, and may participate in the completion,
compaction, and/or maintenance of myelin. This group also
includes butyrophilin (BTN). BTN is the most abundant
protein in bovine milk-fat globule membrane (MFGM).
Length = 100
Score = 31.4 bits (72), Expect = 1.0
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 23/91 (25%)
Query: 934 AHFECRLTPT------------NDPSMTVEWFHNGKALSA------GSRIKTINDF---G 972
A C L+P + S V + +G+ R + + D G
Sbjct: 4 AELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEG 63
Query: 973 FVILEINDVYLRDSGLYTC--KATNKHGEAT 1001
V L I++V D GLYTC ++ + EAT
Sbjct: 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEAT 94
Score = 31.0 bits (71), Expect = 1.2
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 21/83 (25%)
Query: 424 GDSAHFECTLTPVNDPE-LKVEWFHN--GKPIFH---------------KNRVKMVSDF- 464
G+ A C L+P E ++V WF + + + R +++ D
Sbjct: 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAI 60
Query: 465 --GFVVMDIAYVQSHDSGEYVCR 485
G V + I V++ D G Y C
Sbjct: 61 AEGSVALRIHNVRASDEGLYTCF 83
>gnl|CDD|222964 PHA03042, PHA03042, CD47-like protein; Provisional.
Length = 286
Score = 33.2 bits (76), Expect = 1.2
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 443 VEWFHNGKPIFHKNRVKMVS-DFGFVVMDIAYVQSHDSGEYVCRAWNNF 490
+ W N K IF KN S F F + SG Y C A N F
Sbjct: 53 INWKFNNKVIFKKNNTNTSSLKFNF--------SKNLSGNYTCEAINKF 93
Score = 30.8 bits (70), Expect = 6.6
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 1456 NMKVEWFLNGKPLPHKNRFNP---IYDFGYVAMNFGWVYPEDSGEYLCRATNLY 1506
N+ + W N K + KN N ++F + N SG Y C A N +
Sbjct: 50 NIHINWKFNNKVIFKKNNTNTSSLKFNF---SKNL-------SGNYTCEAINKF 93
>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 3 (VEGFR-3).
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 3 (VEGFR-3).
The VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. VEGFRs bind VEGFs with high
affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds
two members of the VEGF family (VEGF-C and -D) and is
involved in tumor angiogenesis and growth.
Length = 67
Score = 30.3 bits (68), Expect = 1.2
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 1761 RFDAKISATKPLDVYWLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820
+ K++A P + W K+GK I +L+ I + +G Y V N+
Sbjct: 2 KLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQ--------IKDVTEASAGTYTLVLWNS 53
Query: 1821 AG--EARCEAELVV 1832
A E R EL+V
Sbjct: 54 AAGLEKRISLELIV 67
>gnl|CDD|143219 cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)-like domain of
vascular endothelial growth factor (VEGF) receptor (R)
and similar proteins. Ig1_VEGFR_like: first
immunoglobulin (Ig)-like domain of vascular endothelial
growth factor (VEGF) receptor(R) related proteins. The
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and
VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds
more weakly. VEGFR-3 appears not to bind VEGF, but binds
other members of the VEGF family (VEGF-C and -D). VEGFRs
bind VEGFs with high affinity with the IG-like domains.
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGFR-2 is a major mediator of the
mitogenic, angiogenic and microvascular
permeability-enhancing effects of VEGF-A. VEGFR-1 may
play an inhibitory part in these processes by binding
VEGF and interfering with its interaction with VEGFR-2.
VEGFR-1 has a signaling role in mediating monocyte
chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and
a survival signal in hematopoietic stem cells or
leukemia cells. VEGFR-3 has been shown to be involved in
tumor angiogenesis and growth. This group also contains
alpha-type platelet-derived growth factor receptor
precursor (PDGFR)-alpha (CD140a), and PDGFR-beta
(CD140b). PDGFRs alpha and beta have an extracellular
component with five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion that has protein
tyrosine kinase activity.
Length = 84
Score = 30.8 bits (70), Expect = 1.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 975 ILEINDVYLRDSGLYTCKATN 995
L I + L+DSG YTC A++
Sbjct: 50 TLTIPNATLKDSGTYTCAASS 70
>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the
seventh immunoglobulin (Ig)-like domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 79
Score = 30.3 bits (68), Expect = 1.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 629 LDILYCYEENSGVYECRATNKYGSDVTKA 657
L I + EE+SG Y C+ +N G+D +K+
Sbjct: 46 LLIKHVLEEDSGYYLCKVSNDVGADASKS 74
>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain
of Kirrel (kin of irregular chiasm-like) 3 (also known
as Neph2) and similar proteins. Ig5_KIRREL3-like:
domain similar to the fifth immunoglobulin (Ig)-like
domain of Kirrel (kin of irregular chiasm-like) 3 (also
known as Neph2). This protein has five Ig-like domains,
one transmembrane domain, and a cytoplasmic tail.
Included in this group is mammalian Kirrel (Neph1),
Kirrel2 (Neph3), and Drosophila RST (irregular chiasm
C-roughest) protein. These proteins contain multiple Ig
domains, have properties of cell adhesion molecules,
and are important in organ development.
Length = 98
Score = 30.8 bits (70), Expect = 1.5
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 3 PRADPNLKIEWFKNGVPLSLGSRIRSTF-----DFGLV-TLSI-NSLRADDSAIYTCKAT 55
P D +I W L GS R T G++ TL+I N+ +D Y C A
Sbjct: 29 PPPD---RIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAW 85
Query: 56 NLLGEAVSTCTLK 68
N G + +L+
Sbjct: 86 NSFGSGTAIISLE 98
Score = 30.5 bits (69), Expect = 2.0
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 721 EGENAHFE--ARLTPTDDPKLKVEWFWNGKPMKTGSRFR----TFCDFGFVI--LEISPV 772
G+ E TP D ++ W W +++GS R T G V+ L IS
Sbjct: 15 LGDKGRVECFIFSTPPPD---RIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNT 71
Query: 773 YPED-CGQYSCRAYNDYGEAVTSASMK 798
D Y+C A+N +G S++
Sbjct: 72 QESDFQTSYNCTAWNSFGSGTAIISLE 98
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 33.4 bits (76), Expect = 1.5
Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 10/168 (5%)
Query: 1149 KHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSE 1208
++ + SQLP E + + E+ P + S+ + +QSA
Sbjct: 192 SENLWSASQLPPDTELTD--EDLQWLYDLDDEQMANDNSPLVMTLSQTME-DQSAIEKES 248
Query: 1209 LSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEIPEEPPRFI 1268
S E + TE HDI ++ P+ + ++ + N T E P I
Sbjct: 249 DSYIDSEPNSSITEPYDHDIQVKNSEPEFKPSNEISSHQVNSTDNESSIISFPL----HI 304
Query: 1269 TEI--ESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINIS 1314
+ + EP ++ ++P + + +ST FF P +I
Sbjct: 305 ADSSDSVSEISLTEP-SRPQSIDSTIEPPIEIPRKMSTPFFTPRSSIL 351
>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like
domain of human neurofascin (NF).
Ig6_hNeurofascin_like: the sixth immunoglobulin
(Ig)-like domain of human neurofascin (NF). NF belongs
to the L1 subfamily of cell adhesion molecules (CAMs)
and is comprised of an extracellular region having six
Ig-like domains and five fibronectin type III domains, a
transmembrane region, and a cytoplasmic domain. NF has
many alternatively spliced isoforms having different
temporal expression patterns during development. NF
participates in axon subcellular targeting and synapse
formation, however little is known of the functions of
the different isoforms.
Length = 77
Score = 30.3 bits (68), Expect = 1.8
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 14/71 (19%)
Query: 529 EPKSDPTMRIDWFFNGRPFATG--------SRVKT-VYDFGFISLDMDYVYARDSGEYIC 579
E K +P W NG+ F R T V DF DY GEY C
Sbjct: 6 EAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDY-----EGEYQC 60
Query: 580 RATNKWGTAMT 590
A N GTA++
Sbjct: 61 FARNNLGTALS 71
Score = 30.3 bits (68), Expect = 1.8
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 14/71 (19%)
Query: 1079 EPKSDPTMRIDWFFNGRPFATG--------SRVKT-VYDFGFISLDMDYVYARDSGEYIC 1129
E K +P W NG+ F R T V DF DY GEY C
Sbjct: 6 EAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDY-----EGEYQC 60
Query: 1130 RATNKWGTAMT 1140
A N GTA++
Sbjct: 61 FARNNLGTALS 71
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 33.0 bits (76), Expect = 1.9
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 1025 ANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQ----LQDNLDVPEAGKVHFD 1075
A K +++L AL R +L D E + F ++ L D+ + P+A V F+
Sbjct: 312 EEAKKALERLYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFE 366
>gnl|CDD|143191 cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like domain of
chondroitin sulfate proteoglycans (CSPGs), human
cartilage link protein (LP) and similar proteins.
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to
that found in chondroitin sulfate proteoglycans (CSPGs)
and human cartilage link protein (LP). Included in
this group are the CSPGs aggrecan, versican, and
neurocan. In CSPGs this Ig-like domain is followed by
hyaluronan (HA)-binding tandem repeats, and a
C-terminal region with epidermal growth factor-like,
lectin-like, and complement regulatory protein-like
domains. Separating these N- and C-terminal regions is
a nonhomologous glycosaminoglycan attachment region. In
cartilage, aggrecan forms cartilage link protein
stabilized aggregates with hyaluronan (HA). These
aggregates contribute to the tissue's load bearing
properties. Aggrecan and versican have a wide
distribution in connective tissue and extracellular
matrices. Neurocan is localized almost exclusively in
nervous tissue. Aggregates having other CSPGs
substituting for aggrecan may contribute to the
structural integrity of many different tissues. There
is considerable evidence that HA-binding CSPGs are
involved in developmental processes in the central
nervous system. Members of the vertebrate HPLN
(hyaluronan/HA and proteoglycan binding link) protein
family are physically linked adjacent to CSPG genes.
Length = 106
Score = 30.7 bits (70), Expect = 1.9
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 21/72 (29%)
Query: 2 EPRADPNLK--IEWFK--------NGVPLSLGSRIRSTFDFGL-----------VTLSIN 40
EP I+W K V +++G R++ + +L I
Sbjct: 14 EPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVIT 73
Query: 41 SLRADDSAIYTC 52
LR +DS Y C
Sbjct: 74 DLRLEDSGRYRC 85
>gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt).
This entry represents 77 residues of an 80 amino acid
(240 nucleotide) tandem repeat, found in a variable
number of copies in an immunodominant outer membrane
protein of Ehrlichia chaffeensis, a tick-borne obligate
intracellular pathogen.
Length = 707
Score = 33.1 bits (74), Expect = 2.0
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 9/173 (5%)
Query: 1125 GEYICRATNKWGTAMTKAKVICKAKHDIVTESQLPDSMSAEKLKELEKNYTPEEIE---- 1180
E+ + G + A+ + A DIV ++ E++ E EK E+
Sbjct: 275 EEHQGETEKEEGIPESHAEDLQPAVDDIVEHPSSEPFVAEEEVSETEKEENNPEVLAEDL 334
Query: 1181 EDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKHDIVTESQLPDSMSA 1240
+D E +Q + + + + E +KE + E +I ++ + SA
Sbjct: 335 QDAADGESGVSDQPAQVVEERESEIEEHQGETEKEEGIPESHAEDDEIASDPSIEHF-SA 393
Query: 1241 EKLKELEK----NYTPEEIEEDEIPEEPPRFITEIESVTVQEAEPVRFETRVE 1289
E KE+ + PE ED P V + AE + E E
Sbjct: 394 EVGKEVSETEKEESNPEVKAEDLQPAVDGDVAHHESEVGDKPAETSKEEESPE 446
>gnl|CDD|143280 cd05872, Ig_Sema4B_like, Immunoglobulin (Ig)-like domain of the class
IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin
(Ig)-like domain of Sema4B_like. Sema4B is a Class IV
semaphorin. Semaphorins are classified based on
structural features additional to the Sema domain. Sema4B
has extracellular Sema and Ig domains, a transmembrane
domain and a short cytoplasmic domain. Sema4B has been
shown to preferentially regulate the development of the
postsynaptic specialization at the glutamatergic
synapses. This cytoplasmic domain includes a PDZ-binding
motif upon which the synaptic localization of Sem4B is
dependent. Sema4B is a ligand of CLCP1, CLCP1 was
identified in an expression profiling analysis, which
compared a highly metastic lung cancer subline with its
low metastic parental line. Sema4B was shown to promote
CLCP1 endocytosis, and their interaction is a potential
target for therapeutic intervention of metastasis.
Length = 85
Score = 30.1 bits (68), Expect = 2.1
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 1776 WLKNGKKIIPDIRYKTLEEDNLFTLLIIEAVVEDSGAYECVAMNN 1820
WL NG + Y+ + LLI+ E SG Y C +
Sbjct: 29 WLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSEEE 69
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 32.7 bits (75), Expect = 2.8
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 1165 EKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYD---SELSEY-QKERANES 1220
E+L+E+E+N ++ DE ++ RL + R K + Y E EY E E
Sbjct: 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAER----YQALLKEKREYEGYELLKEK 232
Query: 1221 TELEKHDIVTESQLPD-SMSAEKLKEL--EKNYTPEEIE----------EDEIPEEPPRF 1267
LE+ E QL EKL E E EEIE +D EE R
Sbjct: 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV 292
Query: 1268 ITEIESVTVQEAEPVR 1283
+I + + A R
Sbjct: 293 KEKIGELEAEIASLER 308
>gnl|CDD|143325 cd07701, Ig1_Necl-3, First (N-terminal) immunoglobulin (Ig)-like
domain of nectin-like molecule-3 (Necl-3, also known as
cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain
similar to the N-terminal immunoglobulin (Ig)-like
domain of nectin-like molecule-3, Necl-3 (also known as
cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D).
Nectin-like molecules have similar domain structures to
those of nectins. At least five nectin-like molecules
have been identified (Necl-1 - Necl-5). They all have an
extracellular region containing three Ig-like domains, a
transmembrane region, and a cytoplasmic region. The
N-terminal Ig-like domain of the extracellular region,
belongs to the V-type subfamily of Ig domains, is
essential to cell-cell adhesion, and plays a part in the
interaction with the envelope glycoprotein D of various
viruses. Necl-3 accumulates in central and peripheral
nervous system tissue, and has been shown to selectively
interact with oligodendrocytes.
Length = 95
Score = 30.0 bits (67), Expect = 3.1
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 925 DLTLAESTLAHFECRLTPTND-------PSMTVEWFHNGKALSAGSRIKTIN-DFGFVIL 976
++T+ E A+ CR+ ++ P+ +F + KAL +RI+ + + + +
Sbjct: 6 NVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALR-DNRIELVRASWHELSI 64
Query: 977 EINDVYLRDSGLYTC 991
I+DV L D G YTC
Sbjct: 65 SISDVSLSDEGQYTC 79
>gnl|CDD|143195 cd05718, Ig1_PVR_like, First immunoglobulin (Ig) domain of
poliovirus receptor (PVR, also known as CD155) and
similar proteins. Ig1_PVR_like: domain similar to the
first immunoglobulin (Ig) domain of poliovirus receptor
(PVR, also known as CD155). Poliovirus (PV) binds to
its cellular receptor (PVR/CD155) to initiate
infection. CD155 is a membrane-anchored, single-span
glycoprotein; its extracellular region has three
Ig-like domains. There are four different isotypes of
CD155 (referred to as alpha, beta, gamma, and delta),
that result from alternate splicing of the CD155 mRNA,
and have identical extracellular domains. CD155-beta
and - gamma, are secreted, CD155-alpha and delta are
membrane-bound and function as PV receptors. The virus
recognition site is contained in the amino-terminal
domain, D1. Having the virus attachment site on the
receptor distal from the plasma membrane, may be
important for successful initiation of infection of
cells by the virus. CD155 binds in the poliovirus
"canyon" with a footprint similar to that of the
intercellular adhesion molecule-1 receptor on human
rhinoviruses. This group also includes the first
Ig-like domain of nectin-1 (also known as poliovirus
receptor related protein(PVRL)1; CD111), nectin-3 (also
known as PVRL 3), nectin-4 (also known as PVRL4; LNIR
receptor)and DNAX accessory molecule 1 (DNAM-1; CD226).
Length = 98
Score = 29.6 bits (67), Expect = 3.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 36 TLSINSLRADDSAIYTCKAT 55
T+SI++LR +D Y C+
Sbjct: 63 TISISNLRLEDEGNYICEFA 82
>gnl|CDD|143166 cd00098, IgC, Immunoglobulin Constant domain. IgC:
Immunoglobulin constant domain (IgC). Members of the
IgC family are components of immunoglobulin, T-cell
receptors, CD1 cell surface glycoproteins, secretory
glycoproteins A/C, and Major Histocompatibility Complex
(MHC) class I/II molecules. In immunoglobulins, each
chain is composed of one variable domain (IgV) and one
or more IgC domains. These names reflect the fact that
the variability in sequences is higher in the variable
domain than in the constant domain. The IgV domain is
responsible for antigen binding, and the IgC domain is
involved in oligomerization and molecular interactions.
Length = 95
Score = 29.7 bits (67), Expect = 4.1
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 7 PNLKIEWFKNGVPLSLGSRIRS-------TFDFGLVTLSINSLRADDSAIYTCKAT 55
P++ + W KNG L+ G T+ L+++ + YTC T
Sbjct: 28 PDITVTWLKNGKELTSGVTTTPPVPNSDGTY-SVSSQLTVSPSDWNSGDTYTCVVT 82
>gnl|CDD|219515 pfam07687, M20_dimer, Peptidase dimerisation domain. This domain
consists of 4 beta strands and two alpha helices which
make up the dimerisation surface of members of the M20
family of peptidases. This family includes a range of
zinc metallopeptidases belonging to several families in
the peptidase classification. Family M20 are Glutamate
carboxypeptidases. Peptidase family M25 contains X-His
dipeptidases.
Length = 107
Score = 29.6 bits (67), Expect = 4.3
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 1003 SCKLTVKGRQG--IDVEPQVSAIFANATKNIQKLEEALYRKDELIPDEEKPNPPVFTSQL 1060
KLTVKG+ G V+AI + + +L P N
Sbjct: 8 GGKLTVKGKAGHSGAPGKGVNAIKL-LARLLAELPAEYGDIGFDFPRTT-LNITGIEGGT 65
Query: 1061 QDNLDVPEAGKVHFDCRLEPKSDP 1084
N+ EA + FD RL P D
Sbjct: 66 ARNVIPAEA-EAKFDIRLLPGEDL 88
>gnl|CDD|107338 cd06343, PBP1_ABC_ligand_binding_like_8, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in uptake of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type active
transport systems that are predicted to be involved in
uptake of amino acids, peptides, or inorganic ions. This
subgroup has high sequence similarity to members of the
family of hydrophobic amino acid transporters (HAAT),
such as leucine/isoleucine/valine binding protein
(LIVBP); however its ligand specificity has not been
determined experimentally.
Length = 362
Score = 31.4 bits (72), Expect = 4.8
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 40/129 (31%)
Query: 1410 YLTEDDLYEPEKKQPPRFVTQIKTQDQLVEMQSTKFECQLAPVGDP-NMKVEWFLNGKPL 1468
+ EDD Y PP+ V Q + +LVE S + + +G P N+ V+ +LN K +
Sbjct: 50 LIVEDDGY-----SPPKTVEQTR---KLVE--SDEVFAMVGGLGTPTNLAVQKYLNEKKV 99
Query: 1469 PHKNRFNPI------YDFGYVAMNFGWVYPEDSGEYLCRATNLYGMDETRA----ILKTT 1518
P P D FGW P Y DE R +++
Sbjct: 100 PQ---LFPASGASKWNDPKPFPWTFGW-QP----SY---------QDEARIYAKYLVEEK 142
Query: 1519 G--KPGIIY 1525
K ++Y
Sbjct: 143 PNAKIAVLY 151
>gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 527
Score = 31.4 bits (72), Expect = 5.4
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 1306 FFFPFINISTAF-------LIFNFCLHAVIFSHPIFDLGFVSLDI 1343
F PF+ ++ F L FNF ++++FS L V+L +
Sbjct: 20 LFLPFMKLNLFFLEWDFLSLKFNFYFNSLLFS---LILLLVTLSV 61
>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 484
Score = 31.5 bits (71), Expect = 5.6
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 1166 KLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEK 1225
+ + KN PE++E + PP L Q KK++ + S+++ + + + +
Sbjct: 387 LMVQGSKN-IPEDVEPVKKISTPPPLQQEASKKKDPTTSDQKLNSQFESNQQDSNLDNNP 445
Query: 1226 HDIVTESQ-LPDSMSAEKLKELEKNYTPEEIEEDEIPE 1262
+ESQ P S + E++K + E++ ++ P+
Sbjct: 446 LPSKSESQSEPPSSKFDTSTEIKKKFLGTEVDPNQFPK 483
>gnl|CDD|227289 COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein
PbpC [Cell envelope biogenesis, outer membrane].
Length = 733
Score = 31.6 bits (72), Expect = 5.7
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 1049 EKPNPPVFTSQLQDNLDVP--EAGKVHFDCRLEPKSDPTMRIDWFFNGRPFATGSRVKTV 1106
P + T + V G V + P I WF NG P SR + V
Sbjct: 647 AVRLPIIATHPDGARVQVIPGSDGAVTLKLIAQGGRGP---IYWFLNGEPLGEASRNRPV 703
>gnl|CDD|218099 pfam04465, DUF499, Protein of unknown function (DUF499). Family of
uncharacterized hypothetical prokaryotic proteins.
Length = 1025
Score = 31.4 bits (71), Expect = 6.8
Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 30/150 (20%)
Query: 1171 EKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTEL--EKHDI 1228
EK P ++ ED++ PR ++ E KE +E E +++DI
Sbjct: 718 EKGKPPAKVREDDV--ILPR-----------EEALRRQVCELLKEEKDEIKERNGQRYDI 764
Query: 1229 VT--ESQLPDSMSAEKLKELEK-------------NYTPEEIEEDEIPEEPPRFITEIES 1273
E LP+S LK L Y E+ EE+ I + E S
Sbjct: 765 RLWYEIYLPESNYEIPLKSLVDEECEVKDEEAVLWGYIVEKKEEEFIVKGEFDLSVEPSS 824
Query: 1274 VTVQEAEPVRFETRVEPRVDPRLRVECSLS 1303
+ + +PV + +P D R VE S +
Sbjct: 825 IKGKPGDPVEVRVKAKPLGDYRFTVELSSN 854
>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of
stem cell factor receptor (SCFR) and similar proteins.
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of
stem cell factor receptor (SCFR). In addition to SCFR
this group also includes the fourth Ig domain of
platelet-derived growth factor receptors (PDGFR), alpha
and beta, the fourth Ig domain of macrophage colony
stimulating factor (M-CSF), and the Ig domain of the
receptor tyrosine kinase KIT. SCFR and the PDGFR alpha
and beta have similar organization: an extracellular
component having five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion having protein
tyrosine kinase activity. SCFR and its ligand SCF are
critical for normal hematopoiesis, mast cell development,
melanocytes and gametogenesis. SCF binds to the second
and third Ig-like domains of SCFR, this fourth Ig-like
domain participates in SCFR dimerization, which follows
ligand binding. Deletion of this fourth SCFR_Ig-like
domain abolishes the ligand-induced dimerization of SCFR
and completely inhibits signal transduction. PDGF is a
potent mitogen for connective tissue cells.
PDGF-stimulated processes are mediated by three different
PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three
PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In
mice, PDGFR alpha, and PDGFR beta, are essential for
normal development.
Length = 101
Score = 29.2 bits (66), Expect = 7.0
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 1770 KPLDVYWLKNGKKIIPDIRYKTLEEDN-----LFTLLIIEAVVEDSGAYECVAMNNAGEA 1824
P + W + + + + E+ + L ++ ++G Y +A N+
Sbjct: 32 PPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91
Query: 1825 RCEAELVVQS 1834
EL V
Sbjct: 92 SLTFELYVNV 101
>gnl|CDD|143269 cd05861, Ig1_PDGFR-alphabeta, Frst immunoglobulin (Ig)-like domain of
platelet-derived growth factor (PDGF) receptors (R),
alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta:
The first immunoglobulin (Ig)-like domain of
platelet-derived growth factor (PDGF) receptors (R),
alpha (CD140a), and beta (CD140b). PDGF is a potent
mitogen for connective tissue cells. PDGF-stimulated
processes are mediated by three different PDGFs
(PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs,
whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha
and beta have similar organization: an extracellular
component with five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion having protein
tyrosine kinase activity. In mice, PDGFRalpha and
PDGFRbeta are essential for normal development.
Length = 84
Score = 28.7 bits (64), Expect = 7.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 1798 FTLLIIEAVVEDSGAYECVAMNNAGEARCEA 1828
TL A VEDSG YEC A + + +
Sbjct: 46 STLTFPHATVEDSGTYECAAHESTQDQKAFK 76
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 30.6 bits (69), Expect = 7.3
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 1797 LFTLLIIEAVVEDSGAYECVAMNNAGEARCEAELVVQSKKAPGKQAPAPGAAVAQDEAPT 1856
L TL+ I ++ SGA G + E KA + AP A A AP
Sbjct: 92 LLTLVRITEILA-SGADASGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPP 150
Query: 1857 VAEPLKDQNVKEGSAV 1872
A ++ + + V
Sbjct: 151 AAAAAGADDLTKITGV 166
>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional.
Length = 540
Score = 31.1 bits (70), Expect = 7.4
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 1799 TLLIIEAVVEDSGAY--ECVAMNNAGEARCEAELVVQSKKAPG-KQAPAPGAAVAQDEAP 1855
TL++ EA DSG Y N+ AR LVV + P P DEA
Sbjct: 125 TLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPRPVPTPPGGTPPPDDDEGDEAG 184
Query: 1856 TVAEP 1860
A P
Sbjct: 185 APATP 189
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 30.5 bits (69), Expect = 7.6
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 1167 LKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTELEKH 1226
K LE+ E +E E E RL + +Y++ W QK + KH
Sbjct: 105 QKLLEEKQKQEREKEREEAELRQRLAKEKYEE-----WCR------QKAQQAAKQRTPKH 153
Query: 1227 DIVTESQLPDSMSAEKLKELEKNYTPEEIEE 1257
S+S + E+N + EE ++
Sbjct: 154 KKEAAESASSSLSG--SAKPERNVSQEEAKK 182
>gnl|CDD|178479 PLN02891, PLN02891, IMP cyclohydrolase.
Length = 547
Score = 30.9 bits (70), Expect = 8.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 706 APVFTVPLSNIDDLREGENAHFEA 729
P TVPL+ LR GEN H +A
Sbjct: 221 PPSLTVPLTLKSSLRYGENPHQKA 244
>gnl|CDD|143183 cd04982, IgV_TCR_gamma, Immunoglobulin (Ig) variable (V) domain
of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma:
immunoglobulin (Ig) variable (V) domain of the gamma
chain of gamma/delta T-cell receptors (TCRs). TCRs
mediate antigen recognition by T lymphocytes, and are
heterodimers consisting of alpha and beta chains or
gamma and delta chains. Each chain contains a variable
(V) and a constant (C) region. The majority of T cells
contain alpha/beta TCRs but a small subset contain
gamma/delta TCRs. Alpha/beta TCRs recognize antigen as
peptide fragments presented by major histocompatibility
complex (MHC) molecules. Gamma/delta TCRs recognize
intact protein antigens; they recognize protein
antigens directly and without antigen processing, and
MHC independently of the bound peptide. Gamma/delta T
cells can also be stimulated by non-peptide antigens
such as small phosphate- or amine-containing compounds.
The variable domain of gamma/delta TCRs is responsible
for antigen recognition and is located at the
N-terminus of the receptor.
Length = 116
Score = 29.3 bits (66), Expect = 8.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 36 TLSINSLRADDSAIYTC 52
TL+I +L +DSA Y C
Sbjct: 78 TLTIQNLEKEDSATYYC 94
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 30.8 bits (70), Expect = 8.9
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 29/140 (20%)
Query: 1162 MSAEKLKELEKNYTPEEIEEDEIPEEPP---------------------RLNQSRYKKQN 1200
EKL+EL++ E E +E+ E +L N
Sbjct: 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
Query: 1201 QSAWYDSELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEIEEDEI 1260
+ ++ L + R E+E+ + +LKEL+ E E +E+
Sbjct: 401 EIERLEARLERLEDRRERLQQEIEELL--------KKLEEAELKELQAELEELEEELEEL 452
Query: 1261 PEEPPRFITEIESVTVQEAE 1280
EE R +E + + E
Sbjct: 453 QEELERLEEALEELREELEE 472
>gnl|CDD|240238 PTZ00040, PTZ00040, translation initiation factor E4; Provisional.
Length = 233
Score = 30.2 bits (68), Expect = 9.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 717 DDLREGENAHFEARLTPTDDPKLKVEWFWN 746
+D HFE R PTD +++ +WN
Sbjct: 123 EDPMNATGGHFEYRFWPTDVSPGQIDEYWN 152
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 30.9 bits (69), Expect = 9.2
Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 1164 AEKLKELEKNYTPEEIEEDEIPEEPPRLNQSRYKKQNQSAWYDSELSEYQKERANESTEL 1223
AE+ K+ ++ EE ++ + ++ L ++ KK+ + A E +A E+ +
Sbjct: 1530 AEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKA 1589
Query: 1224 EKHDIVTESQLPDS---MSAEKL-KELEKNYTPEEIEEDEIPEEPPRFITEIESVTVQEA 1279
E+ I +L + M AE+ K E EE+++ E ++ + + E+ ++A
Sbjct: 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
Query: 1280 EPVRFE 1285
E ++
Sbjct: 1650 EELKKA 1655
>gnl|CDD|151333 pfam10884, DUF2683, Protein of unknown function (DUF2683). This
family of proteins with unknown function appears to be
restricted to Methanosarcinaceae.
Length = 80
Score = 28.2 bits (63), Expect = 9.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 1145 ICKAKHDIVTESQLPDSMSAEKLKE-LEKNYTPEEIEE 1181
I KAK+++ +S D + + +E LE PE IE+
Sbjct: 18 IVKAKYNLKDKSAAIDKIIEQYEEEILEPELKPEFIEK 55
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 30.6 bits (69), Expect = 9.7
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 5/127 (3%)
Query: 1198 KQNQSAWYDS--ELSEYQKERANESTELEKHDIVTESQLPDSMSAEKLKELEKNYTPEEI 1255
KQ ++A+ E ++ E A E D E + D EK+ + EE+
Sbjct: 382 KQTEAAYCKRLDEKRLFEDE-AEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEV 440
Query: 1256 EE--DEIPEEPPRFITEIESVTVQEAEPVRFETRVEPRVDPRLRVECSLSTAFFFPFINI 1313
D + E T E + + R+ L V S I
Sbjct: 441 CNLYDRRDTAWQKQRFLREKQTAFERQKTEHTKIIALRLAGMLLVALSRLLTSLIFQIIF 500
Query: 1314 STAFLIF 1320
+ A ++F
Sbjct: 501 AVAQIVF 507
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.407
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 96,702,528
Number of extensions: 9705653
Number of successful extensions: 10149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9968
Number of HSP's successfully gapped: 495
Length of query: 1884
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1773
Effective length of database: 6,014,308
Effective search space: 10663368084
Effective search space used: 10663368084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (29.4 bits)