BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2149
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 33/138 (23%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
+SF A L + + +SG ++L+A N +GQ STA L VK
Sbjct: 56 ISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTV 115
Query: 44 ----------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
T +K+ + I+ S FQ+S+EGD Y L I+EA+PED G Y
Sbjct: 116 RQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS 175
Query: 88 CIATNQGGQVVLTANLKV 105
ATN G+ TA L V
Sbjct: 176 VNATNSVGRATSTAELLV 193
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+S EG SL++ Y EDSG +++ A NS G+ STA L V+
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 33/138 (23%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
+SF A L + + +SG ++L+A N +GQ STA L VK
Sbjct: 56 ISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTV 115
Query: 44 ----------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
T +K+ + I+ S FQ+S+EGD Y L I+EA+PED G Y
Sbjct: 116 RQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS 175
Query: 88 CIATNQGGQVVLTANLKV 105
ATN G+ TA L V
Sbjct: 176 VNATNSVGRATSTAELLV 193
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+S EG SL++ Y EDSG +++ A NS G+ STA L V+
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
+IKW + K + S+ ++MS +G ++ L + EDEG Y CIATN+ G+V ++ L
Sbjct: 38 DIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
MS +G T +L + T +ED G++T A N G+VE++++L ++
Sbjct: 56 MSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 33/128 (25%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV----------------KTINIK--- 48
++L+++ ++DSG +T + ++A LTV ++++I+
Sbjct: 275 SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFEC 334
Query: 49 -----------WQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97
W K ++ PS YFQ+ + LRI DEG Y+C+A N+ G
Sbjct: 335 AVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN---LRILGVVKSDEGFYQCVAENEAGNA 391
Query: 98 VLTANLKV 105
+A L V
Sbjct: 392 QSSAQLIV 399
Score = 29.6 bits (65), Expect = 0.51, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 49 WQKGDKII--KPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
W +G+++I + KY S G S +L IS +D G Y C+ T + + +A L VL
Sbjct: 255 WLRGEEVIQLRSKKY---SLLGGSNLL-ISNVTDDDSGTYTCVVTYKNENISASAELTVL 310
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 14/53 (26%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYV-------LRISEAFPEDEGQYKCIATN 92
I WQK + + P GDS V L+IS P D G Y+C A N
Sbjct: 153 IHWQKNQQDLNPIP-------GDSRVVVLPSGALQISRLQPGDSGVYRCSARN 198
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 33/136 (24%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
M F+ ASLV+N D G +T +A NS G V S+A L +K
Sbjct: 54 MQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHE 113
Query: 44 ----------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
+ + W K +++K Q S + L+I + GQY
Sbjct: 114 TLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYN 173
Query: 88 CIATNQGGQVVLTANL 103
C A+N G +A L
Sbjct: 174 CSASNPLGTASSSAKL 189
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------ 43
SF A+L + T + G + A N G S+A+LT+
Sbjct: 151 SFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLA 210
Query: 44 ---------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
I I W K ++ I+P ++M+ ++ L + + D GQY C
Sbjct: 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC 270
Query: 89 IATNQGGQVVLTANLKV 105
A+N G+ +A L V
Sbjct: 271 YASNVAGKDSCSAQLGV 287
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 31/136 (22%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT---------------- 44
M+ TA+L + + D+G +T A N AG+ +A+L V+
Sbjct: 246 MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ 305
Query: 45 ---------------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
I + W K + I+ S F+MS VL + ED G Y C
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365
Query: 90 ATNQGGQVVLTANLKV 105
A N G + +LKV
Sbjct: 366 AHNAAGSASSSTSLKV 381
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
I I W K ++ + ++M + + L I++ D G+Y C A N G V +A L
Sbjct: 35 IRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVL 93
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 30/125 (24%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
MSF + A L + EDSG +T A N+AG S+ L VK
Sbjct: 340 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKG 399
Query: 44 -------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
+ W K + ++ K +++ E + I D G+Y+C A
Sbjct: 400 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 459
Query: 91 TNQGG 95
+N G
Sbjct: 460 SNDVG 464
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 36 STARLTVKT-----INIKWQKGDKIIKPSKYFQMS--KEGDSYVLRISEAFPEDEGQYKC 88
S AR K + W K D +K S++FQ+ +EG+ L ISE +D+ +Y C
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC-SLTISEVCGDDDAKYTC 115
Query: 89 IATNQGGQVVLTANLKV 105
A N G+ TA L V
Sbjct: 116 KAVNSLGEATCTAELLV 132
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 36 STARLTVKT-----INIKWQKGDKIIKPSKYFQMS--KEGDSYVLRISEAFPEDEGQYKC 88
S AR K + W K D +K S++FQ+ +EG+ L ISE +D+ +Y C
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC-SLTISEVCGDDDAKYTC 115
Query: 89 IATNQGGQVVLTANLKV 105
A N G+ TA L V
Sbjct: 116 KAVNSLGEATCTAELLV 132
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 57 KPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+P +Y + + E L I +A PED G Y C+A N GQV +A + V
Sbjct: 50 QPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ E A L + ED G +T A N+ GQV +A +TV
Sbjct: 58 TCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
+ ++WQ+G I S + ++ EG + L + E P D+G Y IA G + +LK
Sbjct: 37 VKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLK 92
Query: 105 VLD 107
V++
Sbjct: 93 VIE 95
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 19 DSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEA 78
+ G TLR V L+ +KW G+ +++P + + +EG L +
Sbjct: 22 EGGAATLRCV-----------LSSVAAPVKWCYGNNVLRPGDKYSLRQEGAXLELVVRNL 70
Query: 79 FPEDEGQYKCIATNQGGQVVLT 100
P+D G+Y C +Q LT
Sbjct: 71 RPQDSGRYSCSFGDQTTSATLT 92
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 19 DSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEA 78
+ G TLR V L+ +KW G+ +++P + + +EG L +
Sbjct: 22 EGGAATLRCV-----------LSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNL 70
Query: 79 FPEDEGQYKCIATNQGGQVVLT 100
P+D G+Y C +Q LT
Sbjct: 71 RPQDSGRYSCSFGDQTTSATLT 92
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 28 VNSAGQVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
V +A Q ++ + + KW K ++PSK +S G + L I + PEDEG Y
Sbjct: 20 VKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYT 79
Query: 88 CIATNQGGQVVLTANLKVLDI 108
+ G + L+A L L+I
Sbjct: 80 FVP--DGYALSLSAKLNFLEI 98
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 28/114 (24%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAG---------QVESTARLTVKTINIKWQKGDKIIKPSK 60
L + + + D G++ A N G QV+ ++T IN+K +G K + P
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT 123
Query: 61 YFQMSKEGDSYV-------------------LRISEAFPEDEGQYKCIATNQGG 95
K S++ LRI ED GQY+C+A N G
Sbjct: 124 TMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLG 177
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 42 VKTINIKWQKGDKIIKP-SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
+ T ++ WQ K ++P S + + +E + L I D G Y CIATN+ GQ +
Sbjct: 36 LPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFS 95
Query: 101 ANLKV 105
L V
Sbjct: 96 LELVV 100
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
E SL++ D+G++T A N AGQ + L V
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
I I W K ++ I+P ++M+ ++ L + + D GQY C A+N G+ +A L
Sbjct: 35 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 94
Query: 105 V 105
V
Sbjct: 95 V 95
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 31/136 (22%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT---------------- 44
M+ TA+L + + D+G +T A N AG+ +A+L V+
Sbjct: 54 MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQ 113
Query: 45 ---------------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
I + W K + I+ S F+MS VL + ED G Y C
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 90 ATNQGGQVVLTANLKV 105
A N G + +LKV
Sbjct: 174 AHNAAGSASSSTSLKV 189
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 30/133 (22%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
MSF + A L + EDSG +T A N+AG S+ L VK
Sbjct: 148 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKG 207
Query: 44 -------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
+ W K + ++ K +++ E + I D G+Y+C A
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267
Query: 91 TNQGGQVVLTANL 103
+N G ++
Sbjct: 268 SNDVGSYTCVGSI 280
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
I I W K ++ I+P ++M+ ++ L + + D GQY C A+N G+ +A L
Sbjct: 35 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 94
Query: 105 V 105
V
Sbjct: 95 V 95
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 31/136 (22%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT---------------- 44
M+ TA+L + + D+G +T A N AG+ +A+L V+
Sbjct: 54 MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ 113
Query: 45 ---------------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
I + W K + I+ S F+MS VL + ED G Y C
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 90 ATNQGGQVVLTANLKV 105
A N G + +LKV
Sbjct: 174 AHNAAGSASSSTSLKV 189
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 30/133 (22%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
MSF + A L + EDSG +T A N+AG S+ L VK
Sbjct: 148 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKG 207
Query: 44 -------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
+ W K + ++ K +++ E + I D G+Y+C A
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267
Query: 91 TNQGGQVVLTANL 103
+N G ++
Sbjct: 268 SNDVGSYTCVGSI 280
>pdb|2ENY|A Chain A, Solution Structure Of The Ig-Like Domain (2735-2825) Of
Human Obscurin
Length = 104
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 49 WQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQ 85
W G K + S FQ +++G Y+L + EA P D G+
Sbjct: 43 WTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGE 79
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI 45
L ++ T DSGL+T NSAG V S+ +LT+K I
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 49 WQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLDI 108
W K K I +++S++ + L I + D G Y C N G V + L + I
Sbjct: 40 WTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 42 VKTINIKWQK--GDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL 99
V T +I W K GD +K+ +K LRI+ ED G+Y C+A+N+ G +
Sbjct: 249 VPTPDIAWYKKGGDLPSDKAKFENFNK-----ALRITNVSEEDSGEYFCLASNKMGSIRH 303
Query: 100 TANLKV 105
T +++V
Sbjct: 304 TISVRV 309
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 33/137 (24%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKII------ 56
FE +L + EEDSG + A N G + T + VK + +I
Sbjct: 270 FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGED 329
Query: 57 -----------KPSKYFQMSKE--------------GDSYVLRISEAFPEDEGQYKCIAT 91
KP+ + ++ E GD+ + R ++ Y+C +
Sbjct: 330 GRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI--SSRAVYQCNTS 387
Query: 92 NQGGQVVLTANLKVLDI 108
N+ G ++ A + VLD+
Sbjct: 388 NEHGYLLANAFVSVLDV 404
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMS-KEGDSYVLRISE-AFPEDEGQYKCIATNQGGQVVLTANLK 104
+ W K K + ++ + E VLRI P DE Y+C+A N G+V + A L
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLT 97
Query: 105 VL 106
VL
Sbjct: 98 VL 99
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG-QVVLTANLKV 105
I W K + PS K+ S L+I + D+G+Y+C+A+N G + ANL V
Sbjct: 140 ITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAGVRYSSPANLYV 199
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMS-KEGDSYVLRISE-AFPEDEGQYKCIATNQGGQVVLTANLK 104
I W K K + ++ + +G VLRI P DE Y+C+A+N G++ ++ L
Sbjct: 38 IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97
Query: 105 VL 106
VL
Sbjct: 98 VL 99
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 72 VLRISEAFPEDEGQYKCIATNQGG-QVVLTANLKV 105
L+I ++ D+G+Y+C+ATN G + ANL V
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMS-KEGDSYVLRISE-AFPEDEGQYKCIATNQGGQVVLTANLK 104
+ W K K + ++ + E VLRI P DE Y+C+A N G++ + A L
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
Query: 105 VL 106
VL
Sbjct: 98 VL 99
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
I W K + PS K+ S L+I + D+G+Y+C+ATN G
Sbjct: 140 ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 11 VLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI 45
VL T +DS +T A++S G +E+ A++TVK++
Sbjct: 258 VLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSL 292
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMS-KEGDSYVLRISE-AFPEDEGQYKCIATNQGGQVVLTANLK 104
+ W K K + ++ + E VLRI P DE Y+C+A N G++ + A L
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
Query: 105 VL 106
VL
Sbjct: 98 VL 99
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
I W K + PS K+ S L+I + D+G+Y+C+ATN G
Sbjct: 140 ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMS-KEGDSYVLRISE-AFPEDEGQYKCIATNQGGQVVLTANLK 104
+ W K K + ++ + E VLRI P DE Y+C+A N G++ + A L
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
Query: 105 VL 106
VL
Sbjct: 98 VL 99
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG-QVVLTANLKV 105
I W K + PS K+ S L+I + D+G+Y+C+ATN G + ANL V
Sbjct: 140 ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV 199
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+ W+KG + + S+ +G + L ++ A P D G Y C A N
Sbjct: 46 VVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+ W+KG + + S+ +G + L ++ A P D G Y C A N
Sbjct: 46 VVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
LR S+ ED G Y+C+A N+ G V +A L V
Sbjct: 348 LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 81 EDEGQYKCIATNQGGQVV 98
+D G Y+C+ATN G VV
Sbjct: 72 KDAGSYQCVATNARGTVV 89
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN------QGGQVVLT 100
IKW+K D + SK+ +S E +L I EDEG Y+C A N G++++
Sbjct: 239 IKWRKLDGS-QTSKW--LSSEP---LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
Query: 101 ANLKVLDI 108
A LD+
Sbjct: 293 AQPDWLDV 300
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 18 EDSGLFTLRAVNSAGQVESTARLTVK 43
EDSG++ A N G V ++A LTV+
Sbjct: 356 EDSGMYQCVAENKHGTVYASAELTVQ 381
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+ W+KG + + S+ +G + L ++ A P D G Y C A N
Sbjct: 45 VVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
>pdb|2B0S|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Mn Peptide
pdb|2B1A|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug1033 Peptide
pdb|2B1H|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug29 Peptide
Length = 215
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G S L IS PEDEG Y C A
Sbjct: 63 FSASKSGTSASLAISGLRPEDEGDYYCAA 91
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 30/134 (22%)
Query: 1 MSFEGTTA--SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT-------------- 44
+S + TTA +L + + ED G + A NS G+ R+ V+
Sbjct: 247 LSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEAD 306
Query: 45 --INIKWQKGDKIIKPSKYFQMSKEGDSYV-----------LRISEAFPEDEGQYKCIAT 91
N++W KP + + G+ LR S+ ED G Y+C+A
Sbjct: 307 IGSNLRWGCA-AAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAE 365
Query: 92 NQGGQVVLTANLKV 105
N+ G + +A L V
Sbjct: 366 NKHGTIYASAELAV 379
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
IKW+K D + P Q + + L+I EDEG Y+C A N G+
Sbjct: 238 IKWRKVDGSLSP----QWTTAEPT--LQIPSVSFEDEGTYECEAENSKGR 281
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTIN 46
T SL + +D G +T+ A N G+V T RL V+ +N
Sbjct: 64 TCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVN 103
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 IKWQKGDKIIKP-SKYFQMSKEGDSYV-LRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
I W K K I P S ++ + ++ D L + + +D+G Y +A N G+V T L
Sbjct: 39 IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLM 98
Query: 105 V 105
V
Sbjct: 99 V 99
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102
K ++W+KG + ++ + + ++G L+I + D G+Y C+ GQ +A
Sbjct: 34 KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC----GQERTSAT 89
Query: 103 LKV 105
L V
Sbjct: 90 LTV 92
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
K ++W KG + ++ + ++G L+I ED G+Y C+ + +LT
Sbjct: 45 KMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAMLT 102
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102
K ++W+KG + ++ + + ++G L+I D G+Y C+ GQ +A
Sbjct: 34 KAAPVEWRKGSETLRGGDRYSLRQDGTRCELQIHGLSVADTGEYSCVC----GQERTSAT 89
Query: 103 LKV 105
L V
Sbjct: 90 LTV 92
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 46 NIKWQKGDKIIKPSKYFQMSK--EGDSYVLRISE-AFPEDEGQYKCIATNQGGQVVLTAN 102
I W K K + S+ F++ + +G VLRI DE Y+C ATN G++ +A
Sbjct: 37 RITWMKKGKKVS-SQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAK 95
Query: 103 LKVLD 107
L VL+
Sbjct: 96 LSVLE 100
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG-QVVLTANLKV 105
I W K + P+ K+ S L+I + D+G+Y+C+ATN G + ANL V
Sbjct: 140 ISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 199
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 47 IKWQKGDKIIKPSKYFQMSK--EGDSYVLRISE-AFPEDEGQYKCIATNQGGQVVLTANL 103
I W K K + S+ F++ + +G VLRI DE Y+C ATN G++ +A L
Sbjct: 39 ITWMKKGKKVS-SQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKL 97
Query: 104 KVLD 107
VL+
Sbjct: 98 SVLE 101
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 38/127 (29%)
Query: 17 EEDSGLFTLRAVNSAGQVESTARLTV----------KTIN-------------------- 46
+ D ++ A NS G++ ++A+L+V TI+
Sbjct: 74 QRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAA 133
Query: 47 -------IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG-QVV 98
I W K + P+ K+ S L+I + D+G+Y+C+ATN G +
Sbjct: 134 GGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYS 193
Query: 99 LTANLKV 105
ANL V
Sbjct: 194 APANLYV 200
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ W K D+ +K S + G+ Y L I+ +D+G+Y A N G
Sbjct: 408 VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 456
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ G L +N +D G +T+RA NS G E L V
Sbjct: 427 YNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ W K D+ +K S + G+ Y L I+ +D+G+Y A N G
Sbjct: 514 VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG 562
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ G L +N +D G +T+RA NS G E L V
Sbjct: 533 YNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 46 NIKW--QKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
+I W +G+KII + + KEG L I A ED G Y+C AT+ GQ
Sbjct: 32 SIDWYNPQGEKIISTQRVV-VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 83
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 46 NIKW--QKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
+I W +G+KII + + KEG L I A ED G Y+C AT+ GQ
Sbjct: 30 SIDWYNPQGEKIISTQRVV-VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 47 IKW-QKGDKIIKPS-KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
+KW ++G +II KY +G + L I+ +D Y+ ATNQGG V TA+L+
Sbjct: 36 VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95
Query: 105 V 105
V
Sbjct: 96 V 96
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 47 IKW-QKGDKIIKPS-KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
+KW ++G +II KY +G + L I+ +D Y+ ATNQGG V TA+L+
Sbjct: 36 VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95
Query: 105 V 105
V
Sbjct: 96 V 96
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 47 IKW-QKGDKIIKPS-KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
+KW ++G +II KY +G + L I+ +D Y+ ATNQGG V TA+L+
Sbjct: 34 VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE 93
Query: 105 V 105
V
Sbjct: 94 V 94
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
++W+KG + ++ + + ++G L+I D G+Y C+ + +LT
Sbjct: 38 VEWRKGSETLRDGDRYSLRQDGTKCELQIRGLAMADTGEYSCVCGQERTSAMLT 91
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 19 DSGLFTLRAVNSAGQVESTARLTVKTINIKW--QKGDKIIKPSKYFQMSKEGDSYVLRIS 76
+S FT A+ G+ ES I W +G+KII + + KEG L I
Sbjct: 20 ESKFFTCTAI---GEPES----------IDWYNPQGEKIISTQRVV-VQKEGVRSRLTIY 65
Query: 77 EAFPEDEGQYKCIATNQGGQ 96
A ED G Y+C AT+ GQ
Sbjct: 66 NANIEDAGIYRCQATDAKGQ 85
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
I W + K+I+ ++ + + +G + L + D G Y C ATN+ G+ A L+V
Sbjct: 226 ISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+G+ L + D G + RA N AG+ E A L V
Sbjct: 243 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 46 NIKWQKGDKIIKPSKY---FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+I W++ DK++ P+K + G +L I+ D G+Y C ATN G
Sbjct: 131 SIHWRR-DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102
K ++W+KG + ++ + ++G L+I D G+Y C+ GQ +A
Sbjct: 34 KAAPVEWRKGHETLRDGDRHSLRQDGSRCELQIRGLAVVDAGEYSCVC----GQERTSAT 89
Query: 103 LKV 105
L V
Sbjct: 90 LTV 92
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 30/118 (25%)
Query: 17 EEDSGLFTLRAVNSAGQVESTARLT-------VKTIN---------IKWQ-KGDKIIKPS 59
+ED+G + A NS G+ + +LT V+ IN + W+ K + KP+
Sbjct: 266 QEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPT 325
Query: 60 KYFQMSKEGDSYVLR-----------ISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
++ K GD + R I+ D G Y+C+A N+ G + +A L V+
Sbjct: 326 --YRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 381
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
I W++ D K + G +L I ED G Y+C+A N G+ V L
Sbjct: 236 ILWRRADGKPIARKARRHKSNG---ILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 289
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 81 EDEGQYKCIATNQGGQVV 98
+D G Y+CIATN G +V
Sbjct: 72 QDAGTYQCIATNSFGTIV 89
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 30/118 (25%)
Query: 17 EEDSGLFTLRAVNSAGQVESTARLT-------VKTIN---------IKWQ-KGDKIIKPS 59
+ED+G + A NS G+ + +LT V+ IN + W+ K + KP+
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPT 326
Query: 60 KYFQMSKEGDSYVLR-----------ISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
++ K GD + R I+ D G Y+C+A N+ G + +A L V+
Sbjct: 327 --YRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
I W++ D K + G +L I ED G Y+C+A N G+ V L
Sbjct: 237 ILWRRADGKPIARKARRHKSNG---ILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 81 EDEGQYKCIATNQGGQVV 98
+D G Y+CIATN G +V
Sbjct: 73 QDAGTYQCIATNSFGTIV 90
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin
Binding Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPSKYFQM 64
G + +L+ Y+ D G G+V L + +KW K + I+PS +
Sbjct: 7 GAAFAKILDPAYQVDKG----------GRVRFVVELADPKLEVKWYKNGQEIRPSTKYIF 56
Query: 65 SKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
+G +L I+ D+ +Y A ++
Sbjct: 57 EHKGCQRILFINNCQMTDDSEYYVTAGDE 85
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K KP K ++ + + P D+G Y CI N+ G + T L V
Sbjct: 48 LRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 107
Query: 106 LD 107
++
Sbjct: 108 VE 109
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
++W K + ++ S + + EG L + P D G+++C+A ++ +T
Sbjct: 37 VRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDECAYFTVT 90
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K KP K ++ + + P D+G Y CI N+ G + T L V
Sbjct: 49 LRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 108
Query: 106 LD 107
++
Sbjct: 109 VE 110
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K KP K ++ + + P D+G Y CI N+ G + T L V
Sbjct: 48 LRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 107
Query: 106 LD 107
++
Sbjct: 108 VE 109
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 46 NIKWQKGDKIIKPSKYFQM--SKEG-DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102
++ W + ++ +M S++G S + + A D G Y C+A N+ G+ T
Sbjct: 36 DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA--SDAGAYACVAKNRAGEATFTVQ 93
Query: 103 LKVL 106
L VL
Sbjct: 94 LDVL 97
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 31 AGQVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
G +E L+ ++W K + + Q+ + G VLR+ A D G+Y C A
Sbjct: 11 GGDLELVVHLSGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
Query: 91 TN 92
Sbjct: 71 PQ 72
>pdb|3UJJ|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 4025 In Complex
With Con A Peptide
Length = 213
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
F S+ G L IS A +DE Y C +TN GG
Sbjct: 61 FSGSRSGTMATLTISGAQVDDEADYYCYSTNSGG 94
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 81 EDEGQYKCIATNQGGQVVLTANLKV 105
+D GQY C+ TN G +A L V
Sbjct: 378 QDTGQYTCMVTNSAGNTTASATLNV 402
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 18 EDSGLFTLRAVNSAGQVESTARLTVKT 44
+D+G +T NSAG ++A L V T
Sbjct: 378 QDTGQYTCMVTNSAGNTTASATLNVGT 404
>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From
Human Obscurin
Length = 102
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
K ++W+KG + ++ + + +EG L+I D G+Y C+ + LT
Sbjct: 34 KVAPVEWRKGPENLRDGDRYILRQEGTRCELQICGLAMADAGEYLCVCGQERTSATLT 91
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINI 47
T L ++ E++SGL+T +A NSA +R TVKTI +
Sbjct: 425 TQELFISNITEKNSGLYTCQANNSA---SGHSRTTVKTITV 462
>pdb|4BJL|A Chain A, Locw, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Distilled Water
pdb|4BJL|B Chain B, Locw, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Distilled Water
pdb|3BJL|A Chain A, Loc, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Ammonium Sulfate
pdb|3BJL|B Chain B, Loc, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Ammonium Sulfate
pdb|1BJM|A Chain A, Loc Naks, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Nakso4
pdb|1BJM|B Chain B, Loc Naks, A Lambda 1 Type Light-Chain Dimer (Bence-Jones
Protein) Crystallized In Nakso4
Length = 216
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 16/32 (50%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
S F SK G S L IS PEDE Y C A
Sbjct: 60 SDRFSASKSGTSASLAISGLQPEDETDYYCAA 91
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 44 TINIKWQKGDKIIK-----PSKYFQMSKEGDSYVLRI---SEAFPEDEGQYKCIATNQGG 95
T I+W KG + ++ P + + G + LRI ++ P DEG Y C+A N G
Sbjct: 38 TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP-DEGVYVCVARNYLG 96
Query: 96 QVV 98
+ V
Sbjct: 97 EAV 99
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 46 NIKWQKGDKIIKPSKY---FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+I W++ DK++ P+K + G +L I+ D G+Y C ATN G
Sbjct: 131 SIHWRR-DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 47 IKWQKGDKIIKP-SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ W + + ++P + F EG LRI A D G Y C A N+ G A L+V
Sbjct: 37 VSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
EG L + D+G +T +AVN G + ARL V+
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 44 TINIKWQKGDKIIK-----PSKYFQMSKEGDSYVLRI---SEAFPEDEGQYKCIATNQGG 95
T I+W KG + ++ P + + G + LRI ++ P DEG Y C+A N G
Sbjct: 38 TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP-DEGVYVCVARNYLG 96
Query: 96 QVV 98
+ V
Sbjct: 97 EAV 99
>pdb|1MCW|W Chain W, Three-Dimensional Structure Of A Hybrid Light Chain Dimer.
Protein Engineering Of A Binding Cavity
Length = 216
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
F SK G++ L IS P+DE Y C++ V + KV
Sbjct: 64 FSGSKSGNTASLTISGLLPDDEADYFCMSYLSDASFVFGSGTKV 107
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
DS L I DE +Y CIA N+ G+ + +LKV
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 67 EGDSYVLRISEAFPEDEGQYKCIATNQGG-QVVLTANLKVL 106
+ DS L I A +D G YKC+ T + G Q T N+K+
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>pdb|2E7L|A Chain A, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|2E7L|B Chain B, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
Length = 113
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 47 IKWQKGDKIIKPSKYFQ--MSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
+K+ GD +++ F+ SK S+ LR + D Y C ++QG + + K
Sbjct: 47 LKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSHQGRYLTFGSGTK 106
Query: 105 VL 106
V+
Sbjct: 107 VI 108
>pdb|1NFD|E Chain E, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In
Complex With An Anti-Tcr Fab Fragment Derived From A
Mitogenic Antibody
pdb|1NFD|G Chain G, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In
Complex With An Anti-Tcr Fab Fragment Derived From A
Mitogenic Antibody
Length = 212
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 50 QKGDKII---------KPS---KYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
QK DK I +PS + F S G + L IS A PEDE Y C+++
Sbjct: 36 QKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSS 89
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
L + A +D G Y CIA N GG + A+L V
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
K ++W+KG + ++ + ++G L+I D G+Y C+ + LT
Sbjct: 34 KAAPVEWRKGRESLRDGDRHSLRQDGAVCELQICGLAVADAGEYSCVCGEERTSATLT 91
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 71 YVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ L + P D G Y C+ N+ G + T L VL+
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 216
>pdb|1F3R|B Chain B, Complex Between Fv Antibody Fragment And An Analogue Of
The Main Immunogenic Region Of The Acetylcholine
Receptor
Length = 257
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94
PS+ F S G Y L IS PED Y C N G
Sbjct: 197 PSR-FSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 232
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 60 KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++F ++KE + + ++ ED G+Y+C ATN G ++ L+V
Sbjct: 143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>pdb|1FN4|A Chain A, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic
Antibodies
pdb|1FN4|C Chain C, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic
Antibodies
Length = 211
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94
PS+ F S G Y L IS PED Y C N G
Sbjct: 59 PSR-FSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 94
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 73 LRISEAFPEDEGQYKCIATN 92
L IS P DEG YKCIA N
Sbjct: 172 LLISNVEPIDEGNYKCIAQN 191
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 73 LRISEAFPEDEGQYKCIATN 92
L IS P DEG YKCIA N
Sbjct: 172 LLISNVEPIDEGNYKCIAQN 191
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 82 DEGQYKCIATNQGGQVVLTANLKVL 106
DE +Y CIA N+ G+ T +LKV
Sbjct: 81 DEAEYICIAENKAGEQDATIHLKVF 105
>pdb|3FKU|X Chain X, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|Y Chain Y, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|Z Chain Z, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|S Chain S, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|T Chain T, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|U Chain U, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
Length = 280
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
+ ++ D+ S+ F S+ G++ L I+ PEDE Y C
Sbjct: 187 LSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYC 228
>pdb|2EDK|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Myosin-Binding Protein C, Fast-Type
Length = 101
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQK-GDKIIKPSKY---F 62
++ VL T ED +F +VE ++ + + W K G ++ + + +
Sbjct: 5 SSGPVLIVTPLEDQQVFV------GDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARY 58
Query: 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
+ K+G ++L S+ ED G+Y+ I TN GGQ
Sbjct: 59 RFKKDGKRHILIFSDVVQEDRGRYQVI-TN-GGQ 90
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 33 QVESTARLTVKTI-----NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
+V T +T K I NI W K + S K+G L+I + ED+G+Y+
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKYE 179
Query: 88 CIATNQGG 95
C+A N G
Sbjct: 180 CVAENSMG 187
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K K K + L + P D+G Y C+ N+ G + T +L V
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Query: 106 LD 107
++
Sbjct: 103 VE 104
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102
K ++W+KG + ++ + + ++G L+I D G Y C+ GQ +A
Sbjct: 33 KAAPVEWRKGLEALRDGDKYSLRQDGAVCELQIHGLAMADNGVYSCVC----GQERTSAT 88
Query: 103 LKV 105
L V
Sbjct: 89 LTV 91
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K K K + L + P D+G Y C+ N+ G + T +L V
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Query: 106 LD 107
++
Sbjct: 103 VE 104
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like
Domain(2826-2915) From Human Obscurin
Length = 103
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 34 VESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
VE L+ + W K K I+ S+ + + EG +L I A +D G+Y C
Sbjct: 26 VELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTC 80
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K K K + L + P D+G Y C+ N+ G + T +L V
Sbjct: 41 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 100
Query: 106 LD 107
++
Sbjct: 101 VE 102
>pdb|3HAE|L Chain L, Rational Development Of High-Affinity T-Cell
Receptor-Like Antibodies
pdb|3HAE|G Chain G, Rational Development Of High-Affinity T-Cell
Receptor-Like Antibodies
pdb|3HAE|N Chain N, Rational Development Of High-Affinity T-Cell
Receptor-Like Antibodies
pdb|3HAE|S Chain S, Rational Development Of High-Affinity T-Cell
Receptor-Like Antibodies
Length = 212
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 53 DKIIKPS---KYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
D II+PS F SK G++ L IS EDE Y C
Sbjct: 52 DVIIRPSGVPDRFSGSKSGNTASLTISGLQAEDEAHYYC 90
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 33 QVESTARLTVKTI-----NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
+V T +T K I NI W K + S K+G L+I + ED+G+Y+
Sbjct: 125 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKYE 181
Query: 88 CIATNQGG 95
C+A N G
Sbjct: 182 CVAENSMG 189
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K K K + L + P D+G Y C+ N+ G + T +L V
Sbjct: 42 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 101
Query: 106 LD 107
++
Sbjct: 102 VE 103
>pdb|3FMG|L Chain L, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
Length = 211
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
PS+ F S G + L+IS PED G Y C N G + A K+
Sbjct: 59 PSR-FSGSGSGTHFSLKISSVQPEDFGTYYCQHHN-GPPLTFGAGTKL 104
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K K K + L + P D+G Y C+ N+ G + T +L V
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Query: 106 LD 107
++
Sbjct: 103 VE 104
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 71 YVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ L + P D G Y C+ N+ G + T L VL+
Sbjct: 72 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 108
>pdb|1KIR|A Chain A, Fv Mutant Y(A 50)s (Vl Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
Length = 107
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|3QPQ|L Chain L, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|E Chain E, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|C Chain C, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|I Chain I, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3ULU|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 215
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S+ G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSESGTQYSLKINSLQPEDFGSYYC 88
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K K K + L + P D+G Y C+ N+ G + T +L V
Sbjct: 51 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 110
Query: 106 LD 107
++
Sbjct: 111 VE 112
>pdb|1G7M|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92v)
Length = 107
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|1G7H|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3(Vlw92a)
Length = 107
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 67 EGDSYVLRISEAFPEDEGQYKCIATNQGG-QVVLTANLKVL 106
+ DS L I A +D G YKC+ T + G Q T N+K+
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>pdb|1KIP|A Chain A, Fv Mutant Y(B 32)a (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1KIQ|A Chain A, Fv Mutant Y(B 101)f (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1A2Y|A Chain A, Hen Egg White Lysozyme, D18a Mutant, In Complex With
Mouse Monoclonal Antibody D1.3
pdb|1VFB|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
Length = 107
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|1G7J|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92h)
Length = 107
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|1VFA|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
pdb|1DVF|A Chain A, Idiotopic Antibody D1.3 Fv Fragment-Antiidiotopic
Antibody E5.2 Fv Fragment Complex
Length = 108
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|1G7L|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92s)
Length = 107
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K K K + L + P D+G Y C+ N+ G + T +L V
Sbjct: 51 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 110
Query: 106 LD 107
++
Sbjct: 111 VE 112
>pdb|1G7I|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92f)
Length = 107
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 49 WQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
W +GD F ++ L IS A +D G + C A N G +T LKV++
Sbjct: 241 WHRGD--------FNYERQE---TLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K K K + L + P D+G Y C+ N+ G + T +L V
Sbjct: 45 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 104
Query: 106 L 106
+
Sbjct: 105 V 105
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 67 EGDSYVLRISEAFPEDEGQYKCIATNQGG-QVVLTANLKVL 106
+ DS L I A +D G YKC+ T + G Q T N+K+
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++W K K K K + L + P D+G Y C+ N+ G + T +L V
Sbjct: 44 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 103
Query: 106 L 106
+
Sbjct: 104 V 104
>pdb|3MOQ|A Chain A, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|B Chain B, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|C Chain C, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|D Chain D, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
Length = 126
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 64 MSKEGDSYVLRISEAFPEDEGQYKCIA 90
++K S+ LRIS+ ED G YKC A
Sbjct: 59 VNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 49 WQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
W GD F ++ L IS A D G + C A N G +T L+V+D
Sbjct: 237 WHHGD--------FNYERQA---TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD 284
>pdb|3V4P|L Chain L, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|N Chain N, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|L Chain L, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|N Chain N, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 217
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCI 89
F S G + L+IS PED G Y C+
Sbjct: 67 FSGSGSGTDFTLKISTIKPEDLGMYYCL 94
>pdb|2Z8W|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 64 MSKEGDSYVLRISEAFPEDEGQYKCIA 90
++K S+ LRIS+ ED G YKC A
Sbjct: 59 VNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|1QLE|L Chain L, Cryo-structure Of The Paracoccus Denitrificans
Four-subunit Cytochrome C Oxidase In The Completely
Oxidized State Complexed With An Antibody Fv Fragment
Length = 108
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G + L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQFSLKINSLLPEDFGSYYC 88
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 70 SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+ L + P D+G Y C+ N+ G + T +L V+
Sbjct: 64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
>pdb|2RHE|A Chain A, Structure Of A Novel Bence-Jones Protein (Rhe) Fragment
At 1.6 Angstroms Resolution
Length = 114
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
S F SK G S L IS EDE Y C A N
Sbjct: 60 SDRFSASKSGTSASLAISGLESEDEADYYCAAWN 93
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 48 KWQKGDKIIKPSKYFQMSKEGDSYVLRISEAF-PEDEGQYKCIATNQGGQVVLTANLKVL 106
+W K K K K + + I E+ P D+G Y C+ N+ G + T +L V+
Sbjct: 44 RWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVV 103
Query: 107 D 107
+
Sbjct: 104 E 104
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 49 WQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
W GD F ++ L IS A D G + C A N G +T L+V+D
Sbjct: 262 WHHGD--------FNYERQA---TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD 309
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 64 MSKEGDSYVLRISEAFPEDEGQYKCIA 90
++K S+ LRIS+ ED G YKC A
Sbjct: 59 VNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 48 KWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQY 86
KW K ++ S ++ ++G + L I+ A EDEG Y
Sbjct: 38 KWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDY 76
>pdb|1FDL|L Chain L, Crystallographic Refinement Of The Three-Dimensional
Structure Of The Fab D1.3-Lysozyme Complex At 2.5-
Angstroms Resolution
Length = 214
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
pdb|1QBL|L Chain L, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
pdb|1QBM|L Chain L, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 214
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 64 MSKEGDSYVLRISEAFPEDEGQYKCIA 90
++K S+ LRIS+ ED G YKC A
Sbjct: 59 VNKGSKSFSLRISDLRVEDSGTYKCQA 85
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 47 IKW--QKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
+KW G + S++ ++S D L S D G Y C+ TN G +A L
Sbjct: 37 VKWLLPNGTVLSHASRHPRISVLNDG-TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 95
Query: 105 V 105
V
Sbjct: 96 V 96
>pdb|1CIC|C Chain C, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGSYYC 88
>pdb|2YZ1|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of Murine
Shps-1SIRP ALPHA
pdb|2YZ1|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of Murine
Shps-1SIRP ALPHA
Length = 120
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 71 YVLRISEAFPEDEGQYKCIATNQG 94
+ +RIS PED G Y C+ +G
Sbjct: 78 FSIRISNVTPEDAGTYYCVKFQKG 101
>pdb|2J88|L Chain L, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 213
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G + L+IS PED G Y C
Sbjct: 59 PSR-FSGSGSGTQFSLKISSLQPEDFGNYYC 88
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
KTI+I + + + K SK F LRIS+ ED G YKC A
Sbjct: 47 KTISIGGRYDETVDKGSKSFS---------LRISDLRVEDSGTYKCQA 85
>pdb|1AR1|D Chain D, Structure At 2.7 Angstrom Resolution Of The Paracoccus
Denitrificans Two-Subunit Cytochrome C Oxidase
Complexed With An Antibody Fv Fragment
pdb|1MQK|L Chain L, Crystal Structure Of The Unliganded Fv-Fragment Of The
Anti- Cytochrome C Oxidase Antibody 7e2
pdb|3EHB|D Chain D, A D-Pathway Mutation Decouples The Paracoccus
Denitrificans Cytochrome C Oxidase By Altering The Side
Chain Orientation Of A Distant, Conserved Glutamate
pdb|3HB3|D Chain D, High Resolution Crystal Structure Of Paracoccus
Denitrificans Cytochrome C Oxidase
Length = 120
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G + L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQFSLKINSLLPEDFGSYYC 88
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 44 TINIKWQKGDKIIKPSKYFQMSK----EGD--SYVLRISEAFPEDEGQYKCIATNQGGQV 97
T I W+ K I + +Q+ + GD SY L I+ D G YKCIA ++ G
Sbjct: 458 TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSY-LNITSVHANDGGLYKCIAKSKVGVA 516
Query: 98 VLTANLKV 105
+A L V
Sbjct: 517 EHSAKLNV 524
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 22/120 (18%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAG--QVES----TARLTVKTINIKWQKGD------- 53
+ +L++ EDSG + NS G VE+ TA L+ K I+ Q D
Sbjct: 305 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK-IDPPTQTVDFGRPAVF 363
Query: 54 ---KIIKPSKYFQMSKEGDSY-----VLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
P K K+G + VLRI ED+G Y+C N +A LK+
Sbjct: 364 TCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 423
>pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab Fragment
Complexed With 17-Beta-Estradiol
pdb|1JHK|L Chain L, Crystal Structure Of The Anti-Estradiol Antibody 57-2
Length = 214
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPEDFGTYYC 88
>pdb|2DKU|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 103
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 33 QVE--STARLTVKT----INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQY 86
QVE TA T KT + W+KG ++ S Q S+EG + L IS D Y
Sbjct: 19 QVEEKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTY 78
Query: 87 KC 88
C
Sbjct: 79 TC 80
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 48 KWQKGDKIIKPSKYFQMSKEGDSYVLRISEAF-PEDEGQYKCIATNQGGQVVLTANLKVL 106
+W K K K K + + I E+ P D+G Y C+ N+ G + T +L V+
Sbjct: 51 RWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVV 110
Query: 107 D 107
+
Sbjct: 111 E 111
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 33 QVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQY 86
Q+ S V+ + + W I+ S + G+ L+I+E P D+G+Y
Sbjct: 21 QLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 74
>pdb|1KJ2|A Chain A, Murine Alloreactive Scfv Tcr-peptide-mhc Class I Molecule
Complex
pdb|1KJ2|D Chain D, Murine Alloreactive Scfv Tcr-peptide-mhc Class I Molecule
Complex
Length = 111
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARL-TVKTINIKWQKGDKIIKPSKY 61
+EG TA +LN +YE+ + F E A L ++++++ K + G I +
Sbjct: 13 WEGETA--ILNCSYEDST--FNYFPWYQQFPGEGPALLISIRSVSDKKEDGRFTI----F 64
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL 99
F +K L I+++ P D Y C A QGG+ ++
Sbjct: 65 F--NKREKKLSLHITDSQPGDSATYFCAARYQGGRALI 100
>pdb|1KB5|A Chain A, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 115
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARL-TVKTINIKWQKGDKIIKPSKY 61
+EG TA +LN +YE+ + F E A L ++++++ K + G I +
Sbjct: 13 WEGETA--ILNCSYEDST--FNYFPWYQQFPGEGPALLISIRSVSDKKEDGRFTI----F 64
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL 99
F +K L I+++ P D Y C A QGG+ ++
Sbjct: 65 F--NKREKKLSLHITDSQPGDSATYFCAARYQGGRALI 100
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 12 LNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSY 71
+N T D G F L V + V + I W+K ++ S K+ ++
Sbjct: 16 VNQTVAVD-GTFVLSCVATGSPVPT----------ILWRKDGVLV--STQDSRIKQLENG 62
Query: 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
VL+I A D G+Y CIA+ G+ +A ++V
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96
>pdb|1JNL|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNN|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
Length = 211
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G Y L+I+ PED G Y C
Sbjct: 62 FSGSGSGTQYSLKINSLQPEDFGNYYC 88
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 44 TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
T +KW ++ S + L I + +D G Y+ + TN G+ A L
Sbjct: 37 TAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
Query: 104 KV 105
V
Sbjct: 97 DV 98
>pdb|3GHE|L Chain L, Crystal Structure Of Anti-Hiv-1 Fab 537-10d In Complex
With V3 Peptide Mn
Length = 217
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL 99
S F SK GD+ L IS EDE Y C + VL
Sbjct: 61 SNRFSGSKSGDTASLTISGLQAEDEADYHCSSYTSSTPYVL 101
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+L++ ++D+G +T+ AVN AG RL V
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
>pdb|1A7P|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Engineered Mutant Pro95l->ser On Variant Chain
L Glu81- >asp And Chain H Leu312->val
Length = 107
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ P+D G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPDDFGSYYC 88
>pdb|1A7Q|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) High Affinity Expressed Variant Containing
Ser26l->gly, Ile29l->thr, Glu81l->asp, Thr97l->ser,
Pro240h->leu, Asp258h->ala, Lys281h->glu, Asn283h->asp
And Leu312h->val
Length = 106
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ P+D G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPDDFGSYYC 88
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+G+ L + D G + RA N AG+ E A L V
Sbjct: 53 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
I W + K+I+ ++ + + +G + L + D G Y C ATN+ G+ A L+V
Sbjct: 36 ISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 93
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
E LV+ EDS ++A+N AG+ S A L V+
Sbjct: 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 18 EDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
E+ TL+ V S + S LT I + ++K SKY + + + +
Sbjct: 14 EEGQTLTLKCVTSLRKNSSLQWLTPSGFTI-FLNEYPVLKNSKYQLLHHSANQLSITVPN 72
Query: 78 AFPEDEGQYKCI 89
+DEG YKC+
Sbjct: 73 VTLQDEGVYKCL 84
>pdb|3LRS|L Chain L, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|B Chain B, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|D Chain D, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|F Chain F, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
Length = 211
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
S F SK G++ L IS EDEG Y C + + KV
Sbjct: 59 SNRFSGSKSGNTASLTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKV 105
>pdb|1A7N|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant For Chain L Glu81->asp And Chain H
Leu312->val
pdb|1A7R|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant Chain L Glu81->asp
Length = 107
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ P+D G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPDDFGSYYC 88
>pdb|1A7O|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) R96l Deletion Mutant On Variant For Chain L
Glu81->asp And Chain H Leu312->val
Length = 106
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L+I+ P+D G Y C
Sbjct: 59 PSR-FSGSGSGTQYSLKINSLQPDDFGSYYC 88
>pdb|3MUG|A Chain A, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|C Chain C, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|E Chain E, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|G Chain G, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|I Chain I, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|K Chain K, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
Length = 216
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
S F SK G++ L IS EDEG Y C + + KV
Sbjct: 61 SNRFSGSKSGNTASLTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKV 107
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 33 QVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQY 86
Q+ S V+ + + W I+ S + G+ L+I+E P D+G+Y
Sbjct: 126 QLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 179
>pdb|3MUH|L Chain L, Crystal Structure Of Pg9 Light Chain
Length = 216
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
S F SK G++ L IS EDEG Y C
Sbjct: 61 SNRFSGSKSGNTASLTISGLQAEDEGDYYC 90
>pdb|3MME|L Chain L, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|B Chain B, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|D Chain D, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
Length = 216
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
S F SK G++ L IS EDEG Y C + + KV
Sbjct: 61 SNRFSGSKSGNTASLTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKV 107
>pdb|3PL6|C Chain C, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 206
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 64 MSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
++K + L I+E PED Y C A++ G +
Sbjct: 65 LNKTAKHFSLHITETQPEDSAVYFCAASSFGNE 97
>pdb|3U2S|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U2S|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U36|L Chain L, Crystal Structure Of Pg9 Fab
pdb|3U36|B Chain B, Crystal Structure Of Pg9 Fab
pdb|3U36|D Chain D, Crystal Structure Of Pg9 Fab
pdb|3U36|F Chain F, Crystal Structure Of Pg9 Fab
pdb|3U4E|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
pdb|3U4E|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
Length = 216
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
S F SK G++ L IS EDEG Y C
Sbjct: 61 SNRFSGSKSGNTASLTISGLQAEDEGDYYC 90
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
VLRI ED+G Y+C N +A LK+
Sbjct: 357 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390
>pdb|2HP4|A Chain A, Computational Design And Crystal Structure Of An
Enhanced Affinity Mutant Human Cd8-Alpha-Alpha
Co-Receptor
pdb|2HP4|B Chain B, Computational Design And Crystal Structure Of An
Enhanced Affinity Mutant Human Cd8-Alpha-Alpha
Co-Receptor
Length = 114
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F + GD++VL +S+ E+EG Y C A
Sbjct: 68 FSGKRLGDTFVLTLSDFRRENEGYYFCSA 96
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
NI+W + ++ ++ +S+ ++ +LRI ED G+Y+C +N
Sbjct: 140 NIQWLFNSQSLQLTERMTLSQ--NNSILRIDPIKREDAGEYQCEISN 184
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
I W + K+I+ ++ + + +G + L + D G Y C ATN+ G+ A L+V
Sbjct: 130 ISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+G+ L + D G + RA N AG+ E A L V
Sbjct: 147 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
NI+W + ++ ++ +S+ ++ +LRI ED G+Y+C +N
Sbjct: 140 NIQWLFNSQSLQLTERMTLSQ--NNSILRIDPIKREDAGEYQCEISN 184
>pdb|1AKJ|D Chain D, Complex Of The Human Mhc Class I Glycoprotein Hla-A2 And
The T Cell Coreceptor Cd8
pdb|1AKJ|E Chain E, Complex Of The Human Mhc Class I Glycoprotein Hla-A2 And
The T Cell Coreceptor Cd8
Length = 120
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F + GD++VL +S+ E+EG Y C A
Sbjct: 68 FSGKRLGDTFVLTLSDFRRENEGYYFCSA 96
>pdb|1CD8|A Chain A, Crystal Structure Of A Soluble Form Of The Human T Cell
Co- Receptor Cd8 At 2.6 Angstroms Resolution
pdb|3QZW|G Chain G, Plasticity Of Human Cd8 Binding To Peptide-Hla-A2402
pdb|3QZW|H Chain H, Plasticity Of Human Cd8 Binding To Peptide-Hla-A2402
pdb|3QZW|I Chain I, Plasticity Of Human Cd8 Binding To Peptide-Hla-A2402
pdb|3QZW|J Chain J, Plasticity Of Human Cd8 Binding To Peptide-Hla-A2402
Length = 114
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F + GD++VL +S+ E+EG Y C A
Sbjct: 68 FSGKRLGDTFVLTLSDFRRENEGYYFCSA 96
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
VLRI ED+G Y+C N +A LK+
Sbjct: 360 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 393
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
VLRI ED+G Y+C N +A LK+
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
>pdb|3IY2|A Chain A, Variable Domains Of The Computer Generated Model (Wam)
Of Fab 6 Fitted Into The Cryoem Reconstruction Of The
Virus- Fab 6 Complex
Length = 107
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G + L+I+ PED G Y C
Sbjct: 57 PSR-FSGSGSGTQFSLKINSLQPEDFGSYYC 86
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain
Length = 121
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 53 DKIIKPSKYFQMSKEGD-SYVLRISEAFPEDEGQYKC 88
+ I K +Y + G S+ LRI++ ED G Y+C
Sbjct: 47 ESISKGGRYVETVNSGSKSFSLRINDLTVEDSGTYRC 83
>pdb|3GO1|L Chain L, Crystal Structure Of Anti-Hiv-1 Fab 268-D In Complex With
V3 Peptide Mn
Length = 209
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
F S G + L IS EDE Y C + + G V KV
Sbjct: 61 FSGSTSGTTVTLTISGVQAEDEADYYCQSADSSGDYVFGGGTKV 104
>pdb|2A9M|L Chain L, Structural Analysis Of A Tight-Binding Fluorescein-Scfv;
Apo Form
pdb|2A9M|M Chain M, Structural Analysis Of A Tight-Binding Fluorescein-Scfv;
Apo Form
pdb|2A9N|L Chain L, A Mutation Designed To Alter Crystal Packing Permits
Structural Analysis Of A Tight-Binding Fluorescein-Scfv
Complex
pdb|2A9N|M Chain M, A Mutation Designed To Alter Crystal Packing Permits
Structural Analysis Of A Tight-Binding Fluorescein-Scfv
Complex
Length = 110
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G+S L IS EDE Y C A
Sbjct: 62 FSGSKSGNSASLDISGLQSEDEADYYCAA 90
>pdb|1MH5|A Chain A, The Structure Of The Complex Of The Fab Fragment Of The
Esterolytic Antibody Ms6-164 And A Transition-State
Analog
pdb|1MH5|L Chain L, The Structure Of The Complex Of The Fab Fragment Of The
Esterolytic Antibody Ms6-164 And A Transition-State
Analog
Length = 219
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCI 89
F S G ++ LRIS ED G Y C+
Sbjct: 67 FSGSGSGTAFTLRISRVEAEDVGVYYCL 94
>pdb|1MJJ|A Chain A, High Resolution Crystal Structure Of The Complex Of The
Fab Fragment Of Esterolytic Antibody Ms6-12 And A
Transition- State Analog
pdb|1MJJ|L Chain L, High Resolution Crystal Structure Of The Complex Of The
Fab Fragment Of Esterolytic Antibody Ms6-12 And A
Transition- State Analog
pdb|1MJU|L Chain L, 1.22 Angstrom Resolution Crystal Structure Of The Fab
Fragment Of Esterolytic Antibody Ms6-12
Length = 219
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCI 89
F S G ++ LRIS ED G Y C+
Sbjct: 67 FSGSGSGTAFTLRISRVEAEDVGVYYCL 94
>pdb|1SQ2|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor (nar) Variable Domain In Complex With
Lyxozyme
pdb|1T6V|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor (nar) Variable Domain In Complex With
Lysozyme
pdb|1T6V|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor (nar) Variable Domain In Complex With
Lysozyme
Length = 113
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 53 DKIIKPSKYFQMSKEGD-SYVLRISEAFPEDEGQYKC 88
+ I K +Y + G S+ LRI++ ED G Y+C
Sbjct: 47 ESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC 83
>pdb|1MJ8|L Chain L, High Resolution Crystal Structure Of The Fab Fragment Of
The Esterolytic Antibody Ms6-126
Length = 219
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCI 89
F S G ++ LRIS ED G Y C+
Sbjct: 67 FSGSGSGTAFTLRISRVEAEDVGVYYCL 94
>pdb|3P30|L Chain L, Crystal Structure Of The Cluster Ii Fab 1281 In Complex
With Hiv-1 Gp41 Ectodomain
Length = 213
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 56 IKPS---KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ--GGQVVLTANLKV 105
I+PS F SK G S L IS EDE Y C A + G V A K+
Sbjct: 54 IRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSGPYVFGAGTKL 108
>pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1I85|B Chain B, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1NCN|A Chain A, The Receptor-Binding Domain Of Human B7-2
pdb|1NCN|B Chain B, The Receptor-Binding Domain Of Human B7-2
Length = 110
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 59 SKYF-QMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
SKY + S + DS+ LR+ +D+G Y+CI ++
Sbjct: 56 SKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHK 91
>pdb|1DQL|L Chain L, Crystal Structure Of An Unliganded (Native) Fv From A
Human Igm Anti-Peptide Antibody
Length = 106
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
PS+ F S G + L IS PED Y C+ N
Sbjct: 59 PSR-FSGSGSGTDFTLTISSLQPEDFATYYCLQQN 92
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 81 EDEGQYKCIATNQGGQVVLTANLKVLD 107
+D G Y C+A+N G T N +V++
Sbjct: 255 QDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 81 EDEGQYKCIATNQGGQVVLTANLKVLD 107
+D G Y C+A+N G T N +V++
Sbjct: 255 QDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|2D7T|L Chain L, Crystal Structure Of Human Anti Polyhydroxybutyrate
Antibody Fv
Length = 116
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
F S G + L IS PED Y C+ T+
Sbjct: 62 FSGSGSGTDFTLTISTLQPEDFATYYCLQTH 92
>pdb|2GJ7|F Chain F, Crystal Structure Of A Ge-GiFC COMPLEX
pdb|2GJ7|E Chain E, Crystal Structure Of A Ge-GiFC COMPLEX
Length = 401
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTAR 39
SLV++ E DSGL+TL S G ++ AR
Sbjct: 106 SLVIHGVRETDSGLYTL----SVGDIKDPAR 132
>pdb|1NL0|L Chain L, Crystal Structure Of Human Factor Ix Gla Domain In
Complex Of An Inhibitory Antibody, 10c12
Length = 213
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G+S L IS EDE Y C A
Sbjct: 63 FSGSKSGNSASLDISGLQSEDEADYYCAA 91
>pdb|3D69|L Chain L, Crystal Structure Of The Fab Fragment Of An Anti-Factor
Ix Antibody 10c12
pdb|3D69|A Chain A, Crystal Structure Of The Fab Fragment Of An Anti-Factor
Ix Antibody 10c12
Length = 216
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G+S L IS EDE Y C A
Sbjct: 63 FSGSKSGNSASLDISGLQSEDEADYYCAA 91
>pdb|1PG7|L Chain L, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
pdb|1PG7|M Chain M, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
Length = 213
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
PS+ F S G Y L IS PED Y C+
Sbjct: 59 PSR-FSGSGSGTDYTLTISSLQPEDFATYYCL 89
>pdb|4FQH|L Chain L, Crystal Structure Of Fab Cr9114
pdb|4FQH|B Chain B, Crystal Structure Of Fab Cr9114
pdb|4FQI|L Chain L, Crystal Structure Of Fab Cr9114 In Complex With A H5n1
Influenza Virus Hemagglutinin
pdb|4FQV|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody
Cr9114 Bound To H7 Influenza Hemagglutinin
pdb|4FQV|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody
Cr9114 Bound To H7 Influenza Hemagglutinin
pdb|4FQV|N Chain N, Crystal Structure Of Broadly Neutralizing Antibody
Cr9114 Bound To H7 Influenza Hemagglutinin
pdb|4FQY|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody
Cr9114 Bound To H3 Influenza Hemagglutinin
Length = 216
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G S L IS EDE +Y C A
Sbjct: 63 FSGSKSGTSASLAISGLQSEDEAEYYCAA 91
>pdb|1F6L|L Chain L, Variable Light Chain Dimer Of Anti-Ferritin Antibody
Length = 114
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G + L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQFSLKINSLQPEDFGSYYC 88
>pdb|1JPS|L Chain L, Crystal Structure Of Tissue Factor In Complex With
Humanized Fab D3h44
pdb|1JPT|L Chain L, Crystal Structure Of Fab D3h44
Length = 214
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
PS+ F S G Y L IS PED Y C+
Sbjct: 59 PSR-FSGSGSGTDYTLTISSLQPEDFATYYCL 89
>pdb|1KB5|L Chain L, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 214
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G + L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQFSLKINSLQPEDFGSYYC 88
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
LRIS D G Y C+AT+ G+ +A L V
Sbjct: 69 LRIS-----DTGTYTCVATSSSGETSWSAVLDV 96
>pdb|1ZVO|A Chain A, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
pdb|1ZVO|B Chain B, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
Length = 214
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ-----GGQVVLT 100
F SK G S L IS EDE Y C A + GG LT
Sbjct: 63 FSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLWVFGGGTTLT 106
>pdb|1UJ3|A Chain A, Crystal Structure Of A Humanized Fab Fragment Of Anti-
Tissue-Factor Antibody In Complex With Tissue Factor
Length = 215
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
PS+ F S G Y L IS PED Y C+
Sbjct: 59 PSR-FSGSGSGTDYTLTISSLQPEDFATYYCL 89
>pdb|1I8M|L Chain L, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1P7K|L Chain L, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1P7K|A Chain A, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1XF2|L Chain L, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF2|A Chain A, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF3|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF3|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF4|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|1XF4|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|2FR4|L Chain L, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
pdb|2FR4|A Chain A, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
Length = 214
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G + L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQFSLKINSLQPEDFGSYYC 88
>pdb|2YWY|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|C Chain C, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|D Chain D, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 29 NSAGQVESTA--RLTVKTINIKWQKGDKIIKPSKYFQMSKEGD-SYVLRISEAFPEDEGQ 85
N+A +E T R T+ + N + KI +Y + +G S+ LRI + ED G
Sbjct: 26 NAADDLERTDWYRTTLGSTNEQ-----KISIGGRYVETVNKGSKSFSLRIRDLRVEDSGT 80
Query: 86 YKCIA 90
YKC A
Sbjct: 81 YKCGA 85
>pdb|1F90|L Chain L, Fab Fragment Of Monoclonal Antibody (Lnkb-2) Against
Human Interleukin-2 In Complex With Antigenic Peptide
pdb|1F8T|L Chain L, Fab (Lnkb-2) Of Monoclonal Antibody, Crystal Structure
pdb|1S5I|L Chain L, Fab (Lnkb-2) Of Monoclonal Antibody To Human
Interleukin-2, Crystal Structure
Length = 219
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCI 89
F S G + LRIS ED G Y C+
Sbjct: 67 FTGSGSGTDFTLRISRVEAEDLGVYYCV 94
>pdb|3V7A|G Chain G, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
pdb|3V7A|H Chain H, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
Length = 215
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G + L+I+ PED G Y C
Sbjct: 59 PSR-FSGSGSGTQFSLKINSLQPEDFGSYYC 88
>pdb|1UB5|L Chain L, Crystal Structure Of Antibody 19g2 With Hapten At 100k
pdb|1UB5|B Chain B, Crystal Structure Of Antibody 19g2 With Hapten At 100k
Length = 214
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G + LRIS ED G Y C
Sbjct: 67 FSSSGSGTDFTLRISRVEAEDVGVYYC 93
>pdb|1VER|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 64 MSKEGDSYVLRISEAFPEDEGQYKCIA 90
++K S+ LRI + ED G YKC A
Sbjct: 59 VNKGSKSFSLRIRDLRVEDSGTYKCGA 85
>pdb|2JIX|A Chain A, Crystal Structure Of Abt-007 Fab Fragment With The
Soluble Domain Of Epo Receptor
pdb|2JIX|G Chain G, Crystal Structure Of Abt-007 Fab Fragment With The
Soluble Domain Of Epo Receptor
pdb|2JIX|L Chain L, Crystal Structure Of Abt-007 Fab Fragment With The
Soluble Domain Of Epo Receptor
Length = 214
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
PS+ F S G + L IS PED Y C+ N
Sbjct: 59 PSR-FSGSGSGTEFTLTISSLQPEDFATYYCLQHN 92
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
++ + W G + ++ S+ ++++ E +L + + D+G Y+C N G+
Sbjct: 30 QSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE 83
>pdb|1UZ6|E Chain E, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|L Chain L, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|M Chain M, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|V Chain V, Anti-Lewis X Fab Fragment Uncomplexed
Length = 218
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G + LRIS ED G Y C
Sbjct: 67 FSSSGSGTDFTLRISRVEAEDVGVYYC 93
>pdb|1UZ8|A Chain A, Anti-Lewis X Fab Fragment In Complex With Lewis X
pdb|1UZ8|L Chain L, Anti-Lewis X Fab Fragment In Complex With Lewis X
Length = 218
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G + LRIS ED G Y C
Sbjct: 67 FSSSGSGTDFTLRISRVEAEDVGVYYC 93
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 46 NIKW--QKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
++KW G + S++ ++S D L S D G Y C+ TN G +A L
Sbjct: 381 SVKWLLPNGTVLSHASRHPRISVLNDG-TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Query: 104 KV 105
V
Sbjct: 440 NV 441
>pdb|4HPY|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch59 In
Complex With V2 Peptide
Length = 215
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
F S G L IS A EDE Y C +T+ G
Sbjct: 62 FSGSSSGTMATLTISGAQVEDEADYYCYSTDSSG 95
>pdb|3T0V|A Chain A, Unliganded Fluorogen Activating Protein M8vl
pdb|3T0W|A Chain A, Fluorogen Activating Protein M8vl In Complex With
Dimethylindole Red
pdb|3T0W|B Chain B, Fluorogen Activating Protein M8vl In Complex With
Dimethylindole Red
Length = 123
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G S L IS EDE Y C++
Sbjct: 63 FSGSKSGTSASLAISGLRSEDEADYYCLS 91
>pdb|3IYW|L Chain L, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3IYW|M Chain M, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3N9G|L Chain L, Crystal Structure Of The Fab Fragment Of The Human
Neutralizing Anti- West Nile Virus Mab Cr4354
Length = 220
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G S L IS EDE Y C A
Sbjct: 63 FSGSKSGTSASLAISGLQSEDEADYYCAA 91
>pdb|3CFB|L Chain L, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFB|A Chain A, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFC|L Chain L, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2
Length = 219
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G + LRIS ED G Y C
Sbjct: 67 FSSSGSGTDFTLRISRVEAEDVGVYYC 93
>pdb|3QUM|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
(Psa) In Fab Sandwich With A High Affinity And A Pca
Selective Antibody
pdb|3QUM|M Chain M, Crystal Structure Of Human Prostate Specific Antigen
(Psa) In Fab Sandwich With A High Affinity And A Pca
Selective Antibody
Length = 219
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCI 89
F S G + LRIS ED G Y C+
Sbjct: 67 FSGSGSGTDFTLRISRVEAEDVGVYYCM 94
>pdb|1AE6|L Chain L, Igg-Fab Fragment Of Mouse Monoclonal Antibody Ctm01
Length = 219
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCI 89
F S G ++ LR+S ED G Y C+
Sbjct: 67 FSGSGSGTAFTLRVSRVEAEDVGVYYCM 94
>pdb|3T0X|A Chain A, Fluorogen Activating Protein M8vla4(S55p) In Complex
With Dimethylindole Red
pdb|3T0X|B Chain B, Fluorogen Activating Protein M8vla4(S55p) In Complex
With Dimethylindole Red
Length = 123
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G S L IS EDE Y C++
Sbjct: 63 FSGSKSGTSASLAISGLRSEDEADYYCLS 91
>pdb|3BZ4|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A
Shigella Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A
Shigella Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|E Chain E, Crystal Structure Of Fab F22-4 In Complex With A
Shigella Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|G Chain G, Crystal Structure Of Fab F22-4 In Complex With A
Shigella Flexneri 2a O-Ag Decasaccharide
pdb|3C5S|A Chain A, Crystal Structure Of Monoclonal Fab F22-4 Specific For
Shigella Flexneri 2a O-Ag
pdb|3C5S|C Chain C, Crystal Structure Of Monoclonal Fab F22-4 Specific For
Shigella Flexneri 2a O-Ag
pdb|3C6S|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A
Shigella Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A
Shigella Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|E Chain E, Crystal Structure Of Fab F22-4 In Complex With A
Shigella Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|G Chain G, Crystal Structure Of Fab F22-4 In Complex With A
Shigella Flexneri 2a O-Ag Pentadecasaccharide
pdb|3GGW|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A
Carbohydrate-Mimetic Peptide
pdb|3GGW|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A
Carbohydrate-Mimetic Peptide
Length = 219
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G + LRIS ED G Y C
Sbjct: 67 FSSSGSGTDFTLRISRVEAEDVGIYYC 93
>pdb|7FAB|L Chain L, Crystal Structure Of Human Immunoglobulin Fragment Fab
New Refined At 2.0 Angstroms Resolution
Length = 208
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 46 NIKWQKGDKIIKP-------SKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
N+KW + P + F +SK G S L I+ EDE Y C
Sbjct: 34 NVKWYQQLPGTAPKLLIFHNNARFSVSKSGTSATLAITGLQAEDEADYYC 83
>pdb|1JVK|A Chain A, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1JVK|B Chain B, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1LGV|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LGV|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LHZ|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
pdb|1LHZ|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
Length = 216
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
S F SK G+S L IS EDE Y C
Sbjct: 61 SDRFSGSKSGNSASLTISGLQAEDEADYYC 90
>pdb|2YKL|L Chain L, Structure Of Human Anti-Nicotine Fab Fragment In Complex
With
Nicotine-11-Yl-Methyl-(4-Ethylamino-4-Oxo)-Butanoate
Length = 216
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G S L IS EDE Y C A
Sbjct: 63 FSGSKSGTSASLAISGLRSEDEADYYCAA 91
>pdb|2YK1|L Chain L, Structure Of Human Anti-Nicotine Fab Fragment In Complex
With Nicotine
Length = 216
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G S L IS EDE Y C A
Sbjct: 63 FSGSKSGTSASLAISGLRSEDEADYYCAA 91
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 77 EAFPEDEGQYKCIATN 92
E P+D+G Y C+AT+
Sbjct: 63 EIGPQDQGTYSCVATH 78
>pdb|4HF5|L Chain L, Crystal Structure Of Fab 8f8 In Complex A H2n2 Influenza
Virus Hemagglutinin
Length = 218
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
F SK G S L IS EDE Y C A
Sbjct: 63 FSGSKSGTSASLAISGLQSEDEADYYCAA 91
>pdb|3TJE|L Chain L, Crystal Structure Of Fas Receptor Extracellular Domain
In Complex With Fab E09
Length = 216
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
S F SK G S L I + EDE Y C
Sbjct: 60 SDRFSGSKSGTSASLAIRDLLSEDEADYYC 89
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG--QVVLTANLK 104
S++F S +G S + + D GQY+C T+ G Q ++T ++
Sbjct: 135 SRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,991,917
Number of Sequences: 62578
Number of extensions: 105650
Number of successful extensions: 1015
Number of sequences better than 100.0: 230
Number of HSP's better than 100.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 358
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)