Query psy2149
Match_columns 108
No_of_seqs 126 out of 1962
Neff 11.9
Searched_HMMs 46136
Date Fri Aug 16 17:31:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.8 1.7E-19 3.6E-24 116.6 10.7 99 7-108 385-516 (1051)
2 KOG3513|consensus 99.8 2.4E-18 5.2E-23 111.4 13.3 99 5-107 291-422 (1051)
3 PHA02826 IL-1 receptor-like pr 99.8 8.6E-17 1.9E-21 90.9 12.1 86 7-94 97-211 (227)
4 KOG4194|consensus 99.7 3.4E-17 7.3E-22 101.5 8.5 99 7-107 573-705 (873)
5 cd05748 Ig_Titin_like Immunogl 99.7 1.9E-15 4.2E-20 71.8 10.3 66 40-105 8-74 (74)
6 cd05762 Ig8_MLCK Eighth immuno 99.7 2.7E-15 5.9E-20 74.9 9.9 68 40-107 24-92 (98)
7 cd05892 Ig_Myotilin_C C-termin 99.7 3E-15 6.4E-20 71.2 9.4 66 40-105 7-75 (75)
8 cd05723 Ig4_Neogenin Fourth im 99.7 4.6E-15 1E-19 70.0 9.4 63 40-105 8-71 (71)
9 cd05852 Ig5_Contactin-1 Fifth 99.6 3.2E-15 6.9E-20 70.8 7.9 63 40-105 10-73 (73)
10 cd05893 Ig_Palladin_C C-termin 99.6 1.5E-14 3.3E-19 68.8 9.6 66 40-105 7-75 (75)
11 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 2.5E-14 5.3E-19 69.9 10.3 68 38-105 17-86 (86)
12 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 2.4E-14 5.3E-19 69.1 9.9 66 40-105 7-80 (81)
13 cd05745 Ig3_Peroxidasin Third 99.6 5.5E-15 1.2E-19 70.3 7.4 63 40-105 11-74 (74)
14 cd05744 Ig_Myotilin_C_like Imm 99.6 4E-14 8.6E-19 67.4 10.2 66 40-105 7-75 (75)
15 cd05746 Ig4_Peroxidasin Fourth 99.6 1.5E-14 3.2E-19 67.9 8.0 61 40-103 7-68 (69)
16 cd05737 Ig_Myomesin_like_C C-t 99.6 6.5E-14 1.4E-18 69.2 9.7 67 39-105 24-92 (92)
17 cd05855 Ig_TrkB_d5 Fifth domai 99.6 4.9E-14 1.1E-18 67.5 8.9 65 40-104 7-77 (79)
18 cd05876 Ig3_L1-CAM Third immun 99.6 3.3E-14 7.2E-19 67.0 8.1 63 40-105 7-70 (71)
19 cd04969 Ig5_Contactin_like Fif 99.6 3.7E-14 8E-19 67.2 8.3 63 40-105 10-73 (73)
20 cd05736 Ig2_Follistatin_like S 99.6 1.1E-13 2.3E-18 66.1 9.3 68 40-107 7-75 (76)
21 cd05863 Ig2_VEGFR-3 Second imm 99.6 7.4E-14 1.6E-18 64.9 8.0 59 40-106 7-66 (67)
22 cd05864 Ig2_VEGFR-2 Second imm 99.6 6.6E-14 1.4E-18 65.7 7.6 62 40-106 7-69 (70)
23 PHA02785 IL-beta-binding prote 99.6 5.5E-13 1.2E-17 79.3 13.3 91 7-97 176-318 (326)
24 cd05859 Ig4_PDGFR-alpha Fourth 99.6 1.1E-13 2.4E-18 69.4 8.8 68 39-106 26-100 (101)
25 cd04972 Ig_TrkABC_d4 Fourth do 99.5 4.1E-13 9E-18 66.1 10.2 66 40-105 24-90 (90)
26 KOG4221|consensus 99.5 1E-13 2.2E-18 91.2 10.0 98 7-107 192-327 (1381)
27 cd04975 Ig4_SCFR_like Fourth i 99.5 3.1E-13 6.7E-18 67.7 9.5 73 34-106 21-100 (101)
28 cd05743 Ig_Perlecan_D2_like Im 99.5 3.6E-13 7.8E-18 64.6 9.3 65 40-104 10-75 (78)
29 cd05747 Ig5_Titin_like M5, fif 99.5 5E-13 1.1E-17 66.0 10.0 65 39-103 26-91 (92)
30 cd04976 Ig2_VEGFR Second immun 99.5 3.3E-13 7.1E-18 63.6 9.0 63 40-106 7-70 (71)
31 PF07679 I-set: Immunoglobulin 99.5 4.6E-13 1E-17 65.8 9.6 66 40-105 24-90 (90)
32 PHA02785 IL-beta-binding prote 99.5 7.7E-13 1.7E-17 78.7 12.1 85 9-98 83-204 (326)
33 cd05725 Ig3_Robo Third immunog 99.5 2.4E-13 5.2E-18 63.8 8.0 62 40-105 7-69 (69)
34 cd05730 Ig3_NCAM-1_like Third 99.5 5.1E-13 1.1E-17 66.4 9.5 66 40-107 27-94 (95)
35 cd05867 Ig4_L1-CAM_like Fourth 99.5 8.7E-13 1.9E-17 63.0 9.9 62 40-105 10-75 (76)
36 cd05763 Ig_1 Subgroup of the i 99.5 2E-13 4.4E-18 65.0 7.7 65 40-106 7-75 (75)
37 cd05760 Ig2_PTK7 Second immuno 99.5 5.5E-13 1.2E-17 63.8 9.2 66 40-107 7-76 (77)
38 KOG4194|consensus 99.5 7.4E-14 1.6E-18 87.1 7.4 95 9-105 670-795 (873)
39 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 4.7E-13 1E-17 63.6 8.7 63 40-105 7-73 (74)
40 cd05731 Ig3_L1-CAM_like Third 99.5 2.9E-13 6.3E-18 63.7 7.8 63 40-105 7-70 (71)
41 cd05851 Ig3_Contactin-1 Third 99.5 9.7E-13 2.1E-17 64.5 9.8 64 39-106 24-88 (88)
42 cd05868 Ig4_NrCAM Fourth immun 99.5 6.3E-13 1.4E-17 63.5 8.8 65 40-106 10-76 (76)
43 KOG4222|consensus 99.5 4.8E-14 1E-18 92.2 6.1 98 7-107 186-314 (1281)
44 cd04978 Ig4_L1-NrCAM_like Four 99.5 5E-13 1.1E-17 63.7 8.1 65 40-106 10-76 (76)
45 cd05735 Ig8_DSCAM Eight immuno 99.5 2E-12 4.3E-17 63.4 10.3 68 40-107 10-83 (88)
46 cd05854 Ig6_Contactin-2 Sixth 99.5 4.7E-12 1E-16 61.7 11.5 69 40-108 9-84 (85)
47 cd05857 Ig2_FGFR Second immuno 99.5 3.6E-12 7.8E-17 62.0 10.8 78 15-105 6-85 (85)
48 cd05869 Ig5_NCAM-1 Fifth immun 99.5 1.7E-12 3.7E-17 64.7 9.5 66 40-105 26-97 (97)
49 cd05726 Ig4_Robo Fhird immunog 99.5 7.6E-13 1.6E-17 65.1 7.6 65 40-107 10-83 (90)
50 cd07702 Ig2_VEGFR-1 Second imm 99.5 2.2E-12 4.8E-17 60.8 8.7 63 40-105 7-70 (72)
51 cd05764 Ig_2 Subgroup of the i 99.5 1.3E-12 2.8E-17 62.0 8.0 63 40-105 10-74 (74)
52 cd05728 Ig4_Contactin-2-like F 99.5 1.5E-12 3.2E-17 63.5 8.2 62 40-105 23-85 (85)
53 cd05891 Ig_M-protein_C C-termi 99.5 3.3E-12 7.3E-17 63.1 9.5 66 40-105 25-92 (92)
54 cd04968 Ig3_Contactin_like Thi 99.5 2.6E-12 5.6E-17 63.0 8.9 63 40-106 25-88 (88)
55 cd05750 Ig_Pro_neuregulin Immu 99.4 2.2E-12 4.7E-17 61.4 8.0 62 41-102 8-74 (75)
56 cd05732 Ig5_NCAM-1_like Fifth 99.4 4.2E-12 9E-17 63.1 8.8 66 40-105 25-96 (96)
57 KOG4221|consensus 99.4 1.2E-13 2.5E-18 91.0 4.0 97 6-105 289-415 (1381)
58 cd05870 Ig5_NCAM-2 Fifth immun 99.4 1.8E-11 3.8E-16 61.2 10.7 66 40-105 25-98 (98)
59 cd04970 Ig6_Contactin_like Six 99.4 9.2E-12 2E-16 60.6 9.0 69 40-108 9-84 (85)
60 cd05853 Ig6_Contactin-4 Sixth 99.4 4.4E-12 9.5E-17 61.6 7.5 64 45-108 17-84 (85)
61 cd05865 Ig1_NCAM-1 First immun 99.4 1.4E-11 3.1E-16 61.2 9.2 77 16-105 13-95 (96)
62 cd05856 Ig2_FGFRL1-like Second 99.4 1.7E-11 3.6E-16 59.2 8.6 64 40-105 18-82 (82)
63 cd05858 Ig3_FGFR-2 Third immun 99.4 9.6E-12 2.1E-16 61.2 7.8 67 40-106 10-90 (90)
64 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 1.8E-11 3.8E-16 57.4 8.1 58 40-103 10-68 (69)
65 cd04973 Ig1_FGFR First immunog 99.4 4.7E-11 1E-15 57.4 9.7 73 16-105 7-79 (79)
66 cd04974 Ig3_FGFR Third immunog 99.4 9.7E-12 2.1E-16 61.2 7.3 67 40-106 10-90 (90)
67 cd05733 Ig6_L1-CAM_like Sixth 99.4 1E-11 2.2E-16 59.4 7.2 58 40-99 7-71 (77)
68 cd05724 Ig2_Robo Second immuno 99.4 3E-11 6.4E-16 58.8 9.0 60 42-104 23-85 (86)
69 cd05866 Ig1_NCAM-2 First immun 99.4 5.5E-11 1.2E-15 58.7 9.9 77 16-105 13-91 (92)
70 cd05734 Ig7_DSCAM Seventh immu 99.3 2.2E-11 4.7E-16 58.5 7.9 63 40-105 7-79 (79)
71 cd05740 Ig_CEACAM_D4 Fourth im 99.3 1.6E-10 3.5E-15 56.9 11.1 75 15-105 15-90 (91)
72 cd05773 Ig8_hNephrin_like Eigh 99.3 5.8E-11 1.3E-15 60.4 9.5 69 39-107 31-106 (109)
73 cd05874 Ig6_NrCAM Sixth immuno 99.3 4E-11 8.7E-16 57.3 7.9 58 40-99 7-71 (77)
74 cd05849 Ig1_Contactin-1 First 99.3 7.7E-11 1.7E-15 58.3 9.1 60 40-103 28-91 (93)
75 cd05765 Ig_3 Subgroup of the i 99.3 2.5E-11 5.5E-16 58.5 7.2 65 40-105 10-81 (81)
76 cd05875 Ig6_hNeurofascin_like 99.3 7.1E-11 1.5E-15 56.5 8.7 59 40-100 7-72 (77)
77 cd05848 Ig1_Contactin-5 First 99.3 1.2E-10 2.6E-15 57.7 9.5 57 40-99 28-87 (94)
78 cd05850 Ig1_Contactin-2 First 99.3 2.7E-10 5.9E-15 56.5 9.7 60 40-103 28-92 (94)
79 cd05895 Ig_Pro_neuregulin-1 Im 99.3 1.4E-10 3.1E-15 55.2 8.3 61 42-102 10-75 (76)
80 KOG4222|consensus 99.2 3.3E-11 7.1E-16 79.5 6.3 87 18-107 102-224 (1281)
81 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2.7E-10 5.8E-15 55.3 8.2 67 41-107 11-84 (84)
82 cd07693 Ig1_Robo First immunog 99.2 1.3E-09 2.9E-14 54.3 10.8 66 40-105 25-99 (100)
83 cd05756 Ig1_IL1R_like First im 99.2 1.2E-10 2.6E-15 57.7 6.7 61 43-105 31-94 (94)
84 cd04977 Ig1_NCAM-1_like First 99.2 1.3E-09 2.8E-14 53.8 10.4 77 15-104 12-91 (92)
85 cd05742 Ig1_VEGFR_like First i 99.2 2.2E-10 4.7E-15 55.6 7.5 62 44-105 16-83 (84)
86 cd05722 Ig1_Neogenin First imm 99.2 3.2E-10 7E-15 56.3 8.1 63 40-105 23-95 (95)
87 cd05757 Ig2_IL1R_like Second i 99.2 6.2E-10 1.3E-14 54.9 8.9 57 43-103 27-84 (92)
88 cd05771 IgC_Tapasin_R Tapasin- 99.2 1.6E-09 3.4E-14 57.4 10.9 86 9-94 2-131 (139)
89 cd05729 Ig2_FGFR_like Second i 99.2 5.8E-09 1.3E-13 50.5 11.4 65 41-105 19-85 (85)
90 cd05758 Ig5_KIRREL3-like Fifth 99.2 1.3E-09 2.9E-14 54.4 9.2 64 40-103 25-97 (98)
91 cd04967 Ig1_Contactin First Ig 99.1 2.4E-09 5.1E-14 52.8 8.5 56 40-99 28-87 (91)
92 cd05749 Ig2_Tyro3_like Second 99.0 1E-08 2.3E-13 49.4 8.6 56 40-103 22-80 (81)
93 cd05754 Ig3_Perlecan_like Thir 99.0 8.4E-09 1.8E-13 50.1 7.9 70 16-103 14-84 (85)
94 cd05873 Ig_Sema4D_like Immunog 99.0 2.4E-08 5.1E-13 48.7 9.3 46 45-94 25-71 (87)
95 cd05892 Ig_Myotilin_C C-termin 99.0 2.3E-09 5E-14 51.0 4.9 33 6-38 39-71 (75)
96 cd04979 Ig_Semaphorin_C Immuno 98.9 1.5E-08 3.3E-13 49.6 7.5 62 44-107 23-88 (89)
97 cd05898 Ig5_KIRREL3 Fifth immu 98.9 8.9E-08 1.9E-12 47.7 10.0 76 15-103 13-97 (98)
98 cd07701 Ig1_Necl-3 First (N-te 98.9 1.4E-07 3E-12 46.9 10.5 64 41-105 22-95 (95)
99 cd05748 Ig_Titin_like Immunogl 98.9 9.9E-09 2.1E-13 48.6 5.9 34 5-38 37-70 (74)
100 cd05863 Ig2_VEGFR-3 Second imm 98.9 3.7E-09 8.1E-14 49.1 4.1 32 6-37 29-60 (67)
101 cd04971 Ig_TrKABC_d5 Fifth dom 98.9 9E-09 1.9E-13 49.7 5.5 33 6-38 44-76 (81)
102 cd05882 Ig1_Necl-1 First (N-te 98.9 3.4E-07 7.4E-12 45.5 10.9 64 40-104 21-94 (95)
103 cd05862 Ig1_VEGFR First immuno 98.9 2E-08 4.4E-13 49.0 6.4 39 69-107 48-86 (86)
104 cd05855 Ig_TrkB_d5 Fifth domai 98.9 9.6E-09 2.1E-13 49.2 5.1 32 7-38 43-74 (79)
105 cd05854 Ig6_Contactin-2 Sixth 98.9 9.7E-09 2.1E-13 50.0 5.1 34 6-39 45-78 (85)
106 cd05866 Ig1_NCAM-2 First immun 98.9 7.2E-09 1.6E-13 51.1 4.7 31 5-35 53-83 (92)
107 cd05744 Ig_Myotilin_C_like Imm 98.9 1.4E-08 3.1E-13 48.2 5.5 33 6-38 39-71 (75)
108 cd05895 Ig_Pro_neuregulin-1 Im 98.9 1.4E-08 3E-13 48.3 5.5 33 6-38 42-74 (76)
109 cd05870 Ig5_NCAM-2 Fifth immun 98.9 1.1E-08 2.4E-13 51.0 5.3 33 6-38 62-94 (98)
110 cd05893 Ig_Palladin_C C-termin 98.9 9.4E-09 2E-13 48.9 4.8 32 7-38 40-71 (75)
111 cd05852 Ig5_Contactin-1 Fifth 98.9 6.5E-09 1.4E-13 49.2 4.2 32 7-38 38-69 (73)
112 cd05750 Ig_Pro_neuregulin Immu 98.8 1.9E-08 4.1E-13 47.6 5.4 33 6-38 41-73 (75)
113 cd05894 Ig_C5_MyBP-C C5 immuno 98.8 2.6E-08 5.6E-13 48.6 5.8 33 6-38 50-82 (86)
114 cd05743 Ig_Perlecan_D2_like Im 98.8 9.5E-09 2.1E-13 49.2 3.9 34 4-37 38-71 (78)
115 cd05897 Ig2_IL1R2_like Second 98.8 1.1E-07 2.5E-12 47.1 7.8 54 43-98 27-82 (95)
116 smart00410 IG_like Immunoglobu 98.8 5.3E-07 1.1E-11 43.1 10.2 76 17-105 8-85 (86)
117 smart00409 IG Immunoglobulin. 98.8 5.3E-07 1.1E-11 43.1 10.2 76 17-105 8-85 (86)
118 cd05762 Ig8_MLCK Eighth immuno 98.8 2.4E-08 5.2E-13 49.9 5.3 36 4-39 52-87 (98)
119 cd05869 Ig5_NCAM-1 Fifth immun 98.8 2.6E-08 5.5E-13 49.6 5.4 32 7-38 62-93 (97)
120 cd04974 Ig3_FGFR Third immunog 98.8 8.3E-09 1.8E-13 50.7 3.5 31 7-37 54-84 (90)
121 cd05732 Ig5_NCAM-1_like Fifth 98.8 2.6E-08 5.7E-13 49.4 5.3 33 6-38 60-92 (96)
122 cd05865 Ig1_NCAM-1 First immun 98.8 2.5E-08 5.5E-13 49.6 5.2 31 7-37 59-90 (96)
123 cd05871 Ig_Semaphorin_classIII 98.8 1.3E-07 2.9E-12 46.6 7.7 62 42-107 21-90 (91)
124 smart00408 IGc2 Immunoglobulin 98.8 8.7E-08 1.9E-12 43.3 6.6 50 42-95 13-63 (63)
125 cd05876 Ig3_L1-CAM Third immun 98.8 2.4E-08 5.3E-13 46.9 4.6 33 6-38 34-66 (71)
126 cd05763 Ig_1 Subgroup of the i 98.8 2.6E-08 5.7E-13 47.2 4.7 32 7-38 39-70 (75)
127 cd05853 Ig6_Contactin-4 Sixth 98.8 9E-09 1.9E-13 50.0 3.0 33 7-39 46-78 (85)
128 cd05735 Ig8_DSCAM Eight immuno 98.8 3.9E-08 8.5E-13 48.1 5.2 32 8-39 47-78 (88)
129 cd05746 Ig4_Peroxidasin Fourth 98.8 3.2E-08 7E-13 46.2 4.7 32 7-38 35-66 (69)
130 cd04976 Ig2_VEGFR Second immun 98.8 2.8E-08 6.1E-13 46.7 4.5 32 6-37 33-64 (71)
131 cd05740 Ig_CEACAM_D4 Fourth im 98.8 2.2E-08 4.8E-13 49.3 4.2 31 6-36 53-83 (91)
132 cd04970 Ig6_Contactin_like Six 98.8 2E-08 4.3E-13 48.8 4.1 34 6-39 45-78 (85)
133 cd05725 Ig3_Robo Third immunog 98.8 3.1E-08 6.8E-13 46.2 4.6 32 7-38 34-65 (69)
134 cd05858 Ig3_FGFR-2 Third immun 98.8 1.6E-08 3.5E-13 49.7 3.7 31 8-38 55-85 (90)
135 cd05731 Ig3_L1-CAM_like Third 98.8 2.2E-08 4.8E-13 46.9 4.0 33 6-38 34-66 (71)
136 cd05860 Ig4_SCFR Fourth immuno 98.7 1.8E-06 3.9E-11 43.1 11.2 73 34-106 21-100 (101)
137 cd05745 Ig3_Peroxidasin Third 98.7 2.8E-08 6.1E-13 47.0 4.1 32 7-38 39-70 (74)
138 cd05857 Ig2_FGFR Second immuno 98.7 7.6E-08 1.6E-12 46.7 5.7 34 5-38 48-81 (85)
139 cd05747 Ig5_Titin_like M5, fif 98.7 8E-08 1.7E-12 47.4 5.8 34 5-38 56-89 (92)
140 cd05742 Ig1_VEGFR_like First i 98.7 4.9E-08 1.1E-12 47.3 5.0 33 6-38 47-79 (84)
141 cd05737 Ig_Myomesin_like_C C-t 98.7 4.7E-08 1E-12 48.2 4.9 33 6-38 56-88 (92)
142 cd05760 Ig2_PTK7 Second immuno 98.7 3.7E-08 8E-13 47.0 4.2 30 7-36 37-66 (77)
143 cd04978 Ig4_L1-NrCAM_like Four 98.7 5.2E-08 1.1E-12 46.2 4.6 33 6-38 39-71 (76)
144 cd04969 Ig5_Contactin_like Fif 98.7 4.8E-08 1.1E-12 46.1 4.4 31 8-38 39-69 (73)
145 PF07679 I-set: Immunoglobulin 98.7 4.3E-08 9.2E-13 48.0 4.4 36 3-38 51-86 (90)
146 cd05713 Ig_MOG_like Immunoglob 98.7 2.7E-06 5.9E-11 42.5 12.1 86 20-105 3-99 (100)
147 cd05867 Ig4_L1-CAM_like Fourth 98.7 6.5E-08 1.4E-12 46.0 4.7 32 7-38 40-71 (76)
148 cd05864 Ig2_VEGFR-2 Second imm 98.7 3.5E-08 7.6E-13 46.3 3.6 30 8-37 34-63 (70)
149 cd05765 Ig_3 Subgroup of the i 98.7 8.7E-08 1.9E-12 46.0 5.1 32 7-38 46-77 (81)
150 cd04977 Ig1_NCAM-1_like First 98.7 7.2E-08 1.6E-12 47.6 4.9 28 6-33 55-82 (92)
151 cd05727 Ig2_Contactin-2-like S 98.7 6.5E-08 1.4E-12 48.0 4.6 55 40-97 28-86 (96)
152 cd05753 Ig2_FcgammaR_like Seco 98.7 2.5E-07 5.5E-12 44.8 6.6 70 15-104 11-82 (83)
153 cd05885 Ig2_Necl-4 Second immu 98.7 5.2E-07 1.1E-11 43.3 7.5 55 42-97 11-69 (80)
154 cd05752 Ig1_FcgammaR_like Frst 98.7 1.6E-07 3.4E-12 45.0 5.7 55 15-93 12-68 (78)
155 cd05851 Ig3_Contactin-1 Third 98.7 7.8E-08 1.7E-12 47.1 4.7 31 8-38 53-83 (88)
156 cd04975 Ig4_SCFR_like Fourth i 98.7 8.4E-08 1.8E-12 48.2 4.7 32 7-38 64-95 (101)
157 cd07690 Ig1_CD4 First immunogl 98.7 9.5E-07 2.1E-11 43.8 8.3 29 69-97 63-91 (94)
158 cd05856 Ig2_FGFRL1-like Second 98.7 1.4E-07 3.1E-12 45.2 5.4 33 6-38 46-78 (82)
159 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 6.6E-07 1.4E-11 44.9 7.7 59 45-105 41-104 (104)
160 cd05723 Ig4_Neogenin Fourth im 98.7 1E-07 2.2E-12 44.8 4.6 31 8-38 37-67 (71)
161 cd04968 Ig3_Contactin_like Thi 98.6 8.1E-08 1.8E-12 46.9 4.4 32 7-38 52-83 (88)
162 cd05730 Ig3_NCAM-1_like Third 98.6 1.4E-07 3E-12 46.7 5.2 32 7-38 57-88 (95)
163 cd05726 Ig4_Robo Fhird immunog 98.6 9.3E-08 2E-12 47.0 4.4 32 8-39 47-78 (90)
164 cd05886 Ig1_Nectin-1_like Firs 98.6 1.5E-07 3.1E-12 47.1 4.9 32 6-37 61-93 (99)
165 cd05734 Ig7_DSCAM Seventh immu 98.6 7.5E-08 1.6E-12 46.1 3.7 28 7-34 43-70 (79)
166 cd05859 Ig4_PDGFR-alpha Fourth 98.6 9.1E-08 2E-12 48.0 3.9 32 7-38 64-95 (101)
167 cd04972 Ig_TrkABC_d4 Fourth do 98.6 3.7E-07 8E-12 44.8 5.8 33 6-38 54-86 (90)
168 cd05738 Ig2_RPTP_IIa_LAR_like 98.6 1.1E-07 2.5E-12 45.0 3.8 29 7-35 37-65 (74)
169 cd05891 Ig_M-protein_C C-termi 98.6 2.4E-07 5.2E-12 45.7 5.0 32 7-38 57-88 (92)
170 cd05872 Ig_Sema4B_like Immunog 98.6 1.2E-06 2.5E-11 42.6 7.3 57 45-106 25-83 (85)
171 cd05736 Ig2_Follistatin_like S 98.6 2.6E-07 5.6E-12 43.9 4.8 31 7-37 38-68 (76)
172 cd05756 Ig1_IL1R_like First im 98.6 2.4E-07 5.2E-12 45.9 4.7 31 8-38 60-90 (94)
173 PF00047 ig: Immunoglobulin do 98.6 2.7E-07 5.8E-12 42.3 4.6 49 42-90 13-64 (64)
174 cd05861 Ig1_PDGFR-alphabeta Fr 98.6 4.1E-07 8.9E-12 44.1 5.4 26 7-32 45-70 (84)
175 cd05862 Ig1_VEGFR First immuno 98.6 1.6E-07 3.5E-12 45.8 3.9 32 6-37 48-79 (86)
176 cd05713 Ig_MOG_like Immunoglob 98.5 2.8E-07 6E-12 46.1 4.8 32 5-36 62-93 (100)
177 cd05868 Ig4_NrCAM Fourth immun 98.5 2.5E-07 5.5E-12 44.0 4.4 31 8-38 41-71 (76)
178 cd05717 Ig1_Necl-1-3_like Firs 98.5 9E-06 1.9E-10 40.2 10.4 36 69-105 60-95 (95)
179 cd05759 Ig2_KIRREL3-like Secon 98.5 5.3E-06 1.2E-10 39.9 9.0 61 43-103 12-80 (82)
180 cd05764 Ig_2 Subgroup of the i 98.5 2.8E-07 6.1E-12 43.5 4.3 32 7-38 39-70 (74)
181 cd05757 Ig2_IL1R_like Second i 98.5 2.5E-07 5.4E-12 45.7 4.2 30 7-36 51-80 (92)
182 cd07690 Ig1_CD4 First immunogl 98.5 1.3E-07 2.7E-12 46.9 3.0 32 4-35 61-92 (94)
183 cd04973 Ig1_FGFR First immunog 98.5 3.6E-07 7.8E-12 43.8 4.5 29 9-37 46-74 (79)
184 cd05728 Ig4_Contactin-2-like F 98.5 2.8E-07 6.1E-12 44.8 4.1 31 8-38 51-81 (85)
185 cd05733 Ig6_L1-CAM_like Sixth 98.5 3.3E-07 7.1E-12 43.7 4.2 32 5-36 36-71 (77)
186 cd05845 Ig2_L1-CAM_like Second 98.5 4.7E-07 1E-11 44.8 4.7 55 40-97 28-85 (95)
187 cd05724 Ig2_Robo Second immuno 98.5 3E-07 6.6E-12 44.6 4.0 30 7-36 50-79 (86)
188 PHA03376 BARF1; Provisional 98.5 4.3E-06 9.2E-11 46.1 8.6 29 4-32 83-111 (221)
189 cd05888 Ig1_Nectin-4_like Frst 98.4 8.1E-07 1.8E-11 44.5 5.0 29 6-34 62-91 (100)
190 cd05754 Ig3_Perlecan_like Thir 98.4 4.7E-07 1E-11 43.9 4.0 32 7-38 51-82 (85)
191 cd05879 Ig_P0 Immunoglobulin ( 98.4 5E-07 1.1E-11 46.5 4.1 28 5-32 77-104 (116)
192 cd07702 Ig2_VEGFR-1 Second imm 98.4 4.6E-07 1E-11 42.7 3.6 27 8-34 36-62 (72)
193 cd05774 Ig_CEACAM_D1 First imm 98.4 5.5E-06 1.2E-10 41.9 7.6 34 72-105 71-105 (105)
194 cd05714 Ig_CSPGs_LP Immunoglob 98.4 7.6E-07 1.6E-11 45.0 4.4 31 5-35 65-95 (106)
195 cd05887 Ig1_Nectin-3_like Firs 98.4 1.2E-06 2.7E-11 43.5 5.0 33 6-38 58-91 (96)
196 cd05882 Ig1_Necl-1 First (N-te 98.4 1.1E-06 2.5E-11 43.6 4.9 25 6-30 60-84 (95)
197 cd05718 Ig1_PVR_like First imm 98.4 7.8E-06 1.7E-10 40.6 7.9 38 69-106 60-98 (98)
198 cd05886 Ig1_Nectin-1_like Firs 98.4 2.1E-06 4.6E-11 42.9 5.6 35 71-105 63-98 (99)
199 cd05900 Ig_Aggrecan Immunoglob 98.4 6.6E-06 1.4E-10 42.1 7.4 39 69-107 72-110 (112)
200 PF13895 Ig_2: Immunoglobulin 98.4 3.4E-06 7.3E-11 40.1 6.0 54 42-105 25-80 (80)
201 cd05775 Ig_SLAM-CD84_like_N N- 98.4 1.2E-06 2.6E-11 43.7 4.3 31 4-34 57-87 (97)
202 cd05877 Ig_LP_like Immunoglobu 98.4 1.5E-06 3.3E-11 43.9 4.7 33 5-37 65-97 (106)
203 cd05889 Ig1_DNAM-1_like First 98.4 2.1E-06 4.5E-11 42.7 5.0 32 6-37 58-90 (96)
204 smart00408 IGc2 Immunoglobulin 98.4 1.3E-06 2.8E-11 39.3 4.1 28 5-32 36-63 (63)
205 cd05718 Ig1_PVR_like First imm 98.4 2.2E-06 4.7E-11 42.6 5.2 32 6-37 60-92 (98)
206 cd05773 Ig8_hNephrin_like Eigh 98.3 2E-06 4.4E-11 43.8 5.0 33 7-39 68-101 (109)
207 cd05739 Ig3_RPTP_IIa_LAR_like 98.3 2.5E-06 5.4E-11 39.9 4.9 30 7-38 37-66 (69)
208 cd05881 Ig1_Necl-2 First (N-te 98.3 2.7E-06 5.9E-11 42.2 5.3 28 4-31 58-85 (95)
209 cd05880 Ig_EVA1 Immunoglobulin 98.3 1E-06 2.2E-11 45.3 3.7 28 5-32 76-103 (115)
210 cd05874 Ig6_NrCAM Sixth immuno 98.3 2.3E-06 5.1E-11 40.8 4.5 31 6-36 37-71 (77)
211 cd07701 Ig1_Necl-3 First (N-te 98.3 2.8E-06 6E-11 42.2 4.9 26 6-31 60-85 (95)
212 cd05849 Ig1_Contactin-1 First 98.3 2E-06 4.3E-11 42.6 4.3 29 8-36 57-86 (93)
213 cd05878 Ig_Aggrecan_like Immun 98.3 2.5E-06 5.5E-11 43.5 4.7 28 5-32 69-96 (110)
214 cd05846 Ig1_MRC-OX-2_like Firs 98.3 1.9E-06 4.2E-11 42.9 4.2 32 5-36 58-90 (97)
215 cd05717 Ig1_Necl-1-3_like Firs 98.3 3.8E-06 8.3E-11 41.6 5.1 26 6-31 60-85 (95)
216 cd05715 Ig_P0-like Immunoglobu 98.3 1.8E-06 3.8E-11 44.4 4.0 27 6-32 78-104 (116)
217 cd05848 Ig1_Contactin-5 First 98.3 2.1E-06 4.4E-11 42.6 4.1 29 8-36 58-87 (94)
218 cd04967 Ig1_Contactin First Ig 98.3 2.3E-06 4.9E-11 42.1 4.2 29 8-36 58-87 (91)
219 cd05881 Ig1_Necl-2 First (N-te 98.3 5.6E-05 1.2E-09 37.6 11.8 73 16-93 10-84 (95)
220 cd05897 Ig2_IL1R2_like Second 98.3 1.7E-06 3.8E-11 42.9 3.7 28 7-34 54-81 (95)
221 cd05758 Ig5_KIRREL3-like Fifth 98.3 3.7E-06 8E-11 41.9 4.9 32 7-38 63-95 (98)
222 cd05714 Ig_CSPGs_LP Immunoglob 98.3 4.6E-06 9.9E-11 42.1 5.3 39 69-107 66-104 (106)
223 cd05850 Ig1_Contactin-2 First 98.3 3.9E-06 8.5E-11 41.6 4.9 29 8-36 58-87 (94)
224 cd05727 Ig2_Contactin-2-like S 98.2 8.9E-07 1.9E-11 44.0 2.3 27 6-32 58-84 (96)
225 cd05901 Ig_Versican Immunoglob 98.2 4.7E-06 1E-10 42.8 4.9 29 5-33 76-104 (117)
226 cd05900 Ig_Aggrecan Immunoglob 98.2 3.3E-06 7.1E-11 43.2 4.3 27 5-31 71-97 (112)
227 cd05729 Ig2_FGFR_like Second i 98.2 5.8E-06 1.3E-10 39.8 5.1 32 6-37 49-80 (85)
228 cd05753 Ig2_FcgammaR_like Seco 98.2 1.2E-06 2.6E-11 42.4 2.6 28 7-34 47-74 (83)
229 PHA02826 IL-1 receptor-like pr 98.2 9.2E-06 2E-10 46.6 6.5 35 72-106 99-133 (227)
230 cd05877 Ig_LP_like Immunoglobu 98.2 6.9E-06 1.5E-10 41.5 5.4 38 70-107 67-104 (106)
231 cd05875 Ig6_hNeurofascin_like 98.2 6.9E-06 1.5E-10 39.2 4.9 31 7-37 38-72 (77)
232 cd05888 Ig1_Nectin-4_like Frst 98.2 9.2E-06 2E-10 40.7 5.5 36 70-105 63-99 (100)
233 PF00047 ig: Immunoglobulin do 98.2 1.7E-06 3.7E-11 39.6 2.6 18 10-27 47-64 (64)
234 cd05898 Ig5_KIRREL3 Fifth immu 98.2 8.6E-06 1.9E-10 40.7 5.1 33 5-37 61-94 (98)
235 cd05741 Ig_CEACAM_D1_like Firs 98.2 6.8E-06 1.5E-10 40.3 4.7 26 7-32 56-81 (92)
236 cd05902 Ig_Neurocan Immunoglob 98.2 4.8E-06 1E-10 42.4 4.2 27 5-31 69-95 (110)
237 cd04983 IgV_TCR_alpha_like Imm 98.1 4.3E-06 9.3E-11 42.4 3.6 27 5-31 67-93 (109)
238 cd05896 Ig1_IL1RAPL-1_like Fir 98.1 1.1E-05 2.3E-10 40.6 4.8 31 7-37 69-99 (104)
239 cd00099 IgV Immunoglobulin var 98.1 4.2E-06 9.2E-11 42.0 3.4 27 6-32 65-91 (105)
240 cd05774 Ig_CEACAM_D1 First imm 98.1 6.9E-06 1.5E-10 41.5 4.0 26 7-32 69-94 (105)
241 cd05887 Ig1_Nectin-3_like Firs 98.1 1.8E-05 4E-10 39.4 5.3 36 71-106 60-96 (96)
242 cd05771 IgC_Tapasin_R Tapasin- 98.1 1E-05 2.2E-10 42.9 4.6 36 72-107 2-37 (139)
243 PHA02633 hypothetical protein; 98.1 1.3E-05 2.9E-10 36.2 4.0 32 6-37 16-47 (63)
244 cd00099 IgV Immunoglobulin var 98.0 0.00019 4.2E-09 35.9 8.6 27 69-95 65-91 (105)
245 cd05878 Ig_Aggrecan_like Immun 98.0 3.4E-05 7.4E-10 39.3 5.8 39 69-107 70-108 (110)
246 cd04979 Ig_Semaphorin_C Immuno 98.0 1.1E-05 2.3E-10 39.5 3.8 25 8-32 51-75 (89)
247 smart00410 IG_like Immunoglobu 98.0 3.5E-05 7.7E-10 36.5 5.3 30 7-36 50-79 (86)
248 smart00409 IG Immunoglobulin. 98.0 3.5E-05 7.7E-10 36.5 5.3 30 7-36 50-79 (86)
249 cd05751 Ig1_LILRB1_like First 98.0 7.4E-05 1.6E-09 36.7 6.5 62 15-93 13-75 (91)
250 cd05873 Ig_Sema4D_like Immunog 98.0 5E-06 1.1E-10 40.6 2.2 23 8-30 48-70 (87)
251 smart00406 IGv Immunoglobulin 98.0 4.3E-06 9.2E-11 39.9 1.9 23 5-27 59-81 (81)
252 cd05871 Ig_Semaphorin_classIII 98.0 1.6E-05 3.4E-10 39.2 3.9 25 8-32 53-78 (91)
253 cd04984 IgV_L_lambda Immunoglo 98.0 1.3E-05 2.8E-10 39.9 3.5 27 4-30 59-85 (98)
254 PF13927 Ig_3: Immunoglobulin 98.0 1.1E-05 2.3E-10 37.7 3.1 24 6-29 52-75 (75)
255 cd07694 Ig2_CD4 Second immunog 98.0 0.00014 3E-09 35.4 6.8 56 45-106 31-86 (88)
256 cd05751 Ig1_LILRB1_like First 98.0 1.2E-05 2.6E-10 39.6 3.3 25 6-30 51-75 (91)
257 cd05752 Ig1_FcgammaR_like Frst 98.0 1.3E-05 2.9E-10 38.3 3.2 24 7-31 46-69 (78)
258 cd05901 Ig_Versican Immunoglob 98.0 6.6E-05 1.4E-09 38.7 5.8 38 70-107 78-115 (117)
259 cd04983 IgV_TCR_alpha_like Imm 97.9 0.0004 8.7E-09 35.1 9.0 35 60-94 57-93 (109)
260 cd05883 Ig2_Necl-2 Second immu 97.9 0.0003 6.5E-09 34.0 7.6 65 42-106 11-80 (82)
261 cd04980 IgV_L_kappa Immunoglob 97.9 0.00036 7.9E-09 35.2 8.3 33 61-93 61-93 (106)
262 cd05902 Ig_Neurocan Immunoglob 97.9 5E-05 1.1E-09 38.7 5.1 39 69-107 70-108 (110)
263 cd05716 Ig_pIgR Immunoglobulin 97.9 1.3E-05 2.8E-10 39.9 2.7 27 5-31 61-87 (98)
264 cd05712 Ig_Siglec_N Immunoglob 97.9 4.6E-05 1E-09 39.3 4.6 27 4-30 76-102 (119)
265 cd04980 IgV_L_kappa Immunoglob 97.9 1.5E-05 3.2E-10 40.3 2.8 26 5-30 68-93 (106)
266 PHA02633 hypothetical protein; 97.9 0.00011 2.5E-09 33.2 5.2 36 72-107 19-54 (63)
267 cd05722 Ig1_Neogenin First imm 97.9 3.5E-05 7.6E-10 38.1 4.0 29 8-36 54-88 (95)
268 cd07693 Ig1_Robo First immunog 97.9 4.5E-05 9.8E-10 37.7 4.4 21 14-34 70-90 (100)
269 cd05845 Ig2_L1-CAM_like Second 97.9 1.5E-05 3.2E-10 39.6 2.5 28 6-33 56-84 (95)
270 cd05741 Ig_CEACAM_D1_like Firs 97.9 0.00013 2.7E-09 35.8 5.8 25 71-95 57-81 (92)
271 PF07686 V-set: Immunoglobulin 97.9 1.7E-05 3.6E-10 40.2 2.7 26 5-30 76-101 (114)
272 cd05761 Ig2_Necl-1-4_like Seco 97.8 0.00031 6.7E-09 33.9 6.8 55 42-96 11-70 (82)
273 cd04982 IgV_TCR_gamma Immunogl 97.8 0.00076 1.7E-08 34.5 9.0 33 60-92 64-98 (116)
274 cd05775 Ig_SLAM-CD84_like_N N- 97.8 0.00021 4.5E-09 35.6 6.3 37 69-105 59-96 (97)
275 cd05879 Ig_P0 Immunoglobulin ( 97.8 9.8E-05 2.1E-09 38.1 4.9 34 69-102 78-111 (116)
276 cd05846 Ig1_MRC-OX-2_like Firs 97.8 0.00013 2.8E-09 36.3 4.9 36 70-105 60-96 (97)
277 cd05899 IgV_TCR_beta Immunoglo 97.8 3.7E-05 8E-10 39.1 3.0 25 6-30 70-94 (110)
278 cd05749 Ig2_Tyro3_like Second 97.8 9E-05 2E-09 35.7 4.1 28 7-36 48-75 (81)
279 PHA02987 Ig domain OX-2-like p 97.7 7.5E-05 1.6E-09 41.2 4.2 32 6-37 83-116 (189)
280 PF13927 Ig_3: Immunoglobulin 97.7 2.9E-05 6.2E-10 36.2 2.2 22 71-92 54-75 (75)
281 cd04982 IgV_TCR_gamma Immunogl 97.7 5.2E-05 1.1E-09 38.9 3.3 24 6-29 75-98 (116)
282 cd05720 Ig_CD8_alpha Immunoglo 97.7 4E-05 8.7E-10 38.7 2.7 25 5-29 66-90 (104)
283 cd04984 IgV_L_lambda Immunoglo 97.7 0.0013 2.9E-08 32.6 9.9 34 60-93 52-85 (98)
284 cd07700 IgV_CD8_beta Immunoglo 97.6 5.3E-05 1.2E-09 38.4 2.5 25 5-29 69-93 (107)
285 cd07706 IgV_TCR_delta Immunogl 97.6 6.8E-05 1.5E-09 38.5 2.9 26 5-30 69-94 (116)
286 cd07705 Ig2_Necl-1 Second immu 97.6 0.0014 3E-08 31.7 9.3 56 42-97 11-72 (83)
287 cd05899 IgV_TCR_beta Immunoglo 97.6 0.0018 4E-08 32.8 7.7 26 69-94 70-95 (110)
288 cd05860 Ig4_SCFR Fourth immuno 97.6 0.00037 8.1E-09 35.0 4.9 31 7-37 64-94 (101)
289 cd05715 Ig_P0-like Immunoglobu 97.5 0.00029 6.4E-09 36.2 4.4 27 70-96 79-105 (116)
290 cd05889 Ig1_DNAM-1_like First 97.5 0.00072 1.6E-08 33.7 5.2 33 71-103 60-93 (96)
291 cd00096 Ig Immunoglobulin doma 97.5 0.0018 3.9E-08 29.0 6.6 50 45-94 13-66 (74)
292 cd05880 Ig_EVA1 Immunoglobulin 97.5 0.00038 8.2E-09 35.8 4.2 28 69-96 77-104 (115)
293 cd00098 IgC Immunoglobulin Con 97.5 0.0026 5.6E-08 31.2 7.1 52 45-96 30-87 (95)
294 PF07686 V-set: Immunoglobulin 97.4 0.0013 2.8E-08 33.1 6.1 46 60-105 66-114 (114)
295 KOG3515|consensus 97.4 0.00069 1.5E-08 44.9 5.8 95 9-105 362-492 (741)
296 PHA02987 Ig domain OX-2-like p 97.4 0.003 6.4E-08 35.2 7.0 38 69-106 83-122 (189)
297 cd00096 Ig Immunoglobulin doma 97.3 0.00092 2E-08 30.0 4.5 27 5-31 40-66 (74)
298 cd05711 Ig_FcalphaRI Immunoglo 97.3 0.0039 8.4E-08 30.9 6.8 47 45-91 29-75 (94)
299 cd05884 Ig2_Necl-3 Second immu 97.3 0.0035 7.6E-08 30.3 6.3 55 42-96 11-71 (83)
300 cd05872 Ig_Sema4B_like Immunog 97.2 0.00024 5.1E-09 34.6 1.8 22 8-29 47-68 (85)
301 PF13895 Ig_2: Immunoglobulin 97.2 0.00043 9.3E-09 32.6 2.4 23 10-32 47-69 (80)
302 cd05711 Ig_FcalphaRI Immunoglo 97.2 0.00097 2.1E-08 33.0 3.7 23 7-29 54-76 (94)
303 cd05716 Ig_pIgR Immunoglobulin 97.1 0.0037 7.9E-08 31.0 5.5 27 68-94 61-87 (98)
304 cd04981 IgV_H Immunoglobulin ( 97.0 0.00086 1.9E-08 34.6 2.8 24 6-29 74-97 (117)
305 cd05885 Ig2_Necl-4 Second immu 97.0 0.0014 3E-08 31.6 3.2 27 7-33 42-68 (80)
306 PHA02914 Immunoglobulin-like d 97.0 0.007 1.5E-07 37.6 6.7 32 69-100 344-375 (500)
307 PF07354 Sp38: Zona-pellucida- 96.9 0.003 6.5E-08 36.9 4.5 47 45-94 13-60 (271)
308 cd07700 IgV_CD8_beta Immunoglo 96.9 0.017 3.6E-07 29.2 7.7 25 68-92 69-93 (107)
309 smart00406 IGv Immunoglobulin 96.9 0.0023 4.9E-08 30.2 3.3 30 60-89 49-80 (81)
310 cd05720 Ig_CD8_alpha Immunoglo 96.8 0.018 3.9E-07 29.0 8.6 32 61-92 59-90 (104)
311 PF11465 Receptor_2B4: Natural 96.6 0.016 3.4E-07 29.4 5.2 36 72-107 72-108 (108)
312 cd07706 IgV_TCR_delta Immunogl 96.6 0.034 7.3E-07 28.5 8.3 34 60-93 59-94 (116)
313 cd05755 Ig2_ICAM-1_like Second 96.6 0.032 6.8E-07 28.1 7.1 70 15-97 13-88 (100)
314 cd05712 Ig_Siglec_N Immunoglob 96.6 0.0084 1.8E-07 31.0 4.3 26 68-93 77-102 (119)
315 PF11465 Receptor_2B4: Natural 96.5 0.0051 1.1E-07 31.1 3.2 34 3-36 66-99 (108)
316 cd05721 IgV_CTLA-4 Immunoglobu 96.5 0.0051 1.1E-07 31.6 3.1 25 4-28 70-94 (115)
317 cd05759 Ig2_KIRREL3-like Secon 96.4 0.009 1.9E-07 28.6 3.8 24 8-31 46-69 (82)
318 cd07703 Ig2_Nectin-2_like Seco 96.4 0.023 4.9E-07 28.3 5.1 64 40-104 25-92 (95)
319 cd07691 Ig_CD3_gamma_delta Imm 96.4 0.026 5.6E-07 26.3 4.8 21 72-92 34-54 (69)
320 cd05719 Ig2_PVR_like Second im 96.3 0.045 9.7E-07 27.2 7.1 57 40-99 25-87 (95)
321 PHA02982 hypothetical protein; 96.2 0.011 2.3E-07 33.6 3.7 32 2-33 94-125 (251)
322 PHA03376 BARF1; Provisional 96.1 0.1 2.3E-06 29.5 11.0 32 63-94 79-110 (221)
323 cd05766 IgC_MHC_II_beta Class 96.0 0.068 1.5E-06 26.5 9.5 68 16-95 12-84 (94)
324 smart00407 IGc1 Immunoglobulin 95.9 0.064 1.4E-06 25.2 7.9 50 45-94 16-71 (75)
325 KOG3515|consensus 95.9 0.015 3.1E-07 39.1 3.6 85 9-93 60-185 (741)
326 PF08205 C2-set_2: CD80-like C 95.9 0.076 1.6E-06 25.7 7.6 58 40-97 24-87 (89)
327 PF07654 C1-set: Immunoglobuli 95.7 0.083 1.8E-06 25.3 5.9 63 18-95 8-78 (83)
328 cd07699 IgC_L Immunoglobulin C 95.5 0.13 2.7E-06 25.8 6.4 64 19-94 18-89 (100)
329 cd05767 IgC_MHC_II_alpha Class 95.3 0.15 3.3E-06 25.3 8.5 60 20-94 17-84 (94)
330 cd07698 IgC_MHC_I_alpha3 Class 95.3 0.15 3.3E-06 25.1 9.6 66 18-95 14-84 (93)
331 PF05790 C2-set: Immunoglobuli 95.1 0.16 3.4E-06 24.5 5.7 34 72-105 44-78 (80)
332 cd07694 Ig2_CD4 Second immunog 94.8 0.12 2.6E-06 25.4 4.1 25 6-30 49-73 (88)
333 KOG1480|consensus 94.7 0.04 8.7E-07 37.2 3.0 56 40-98 154-210 (909)
334 cd05772 IgC_SIRP Signal-regula 94.7 0.27 5.8E-06 25.3 10.0 49 45-94 38-92 (111)
335 PF08204 V-set_CD47: CD47 immu 94.4 0.019 4.1E-07 30.3 0.8 32 5-37 83-114 (130)
336 PF08204 V-set_CD47: CD47 immu 94.3 0.39 8.4E-06 25.5 5.6 33 73-106 88-120 (130)
337 cd00098 IgC Immunoglobulin Con 94.2 0.093 2E-06 25.6 3.0 24 9-32 63-86 (95)
338 PF07354 Sp38: Zona-pellucida- 94.1 0.054 1.2E-06 31.9 2.3 25 7-31 36-60 (271)
339 cd07692 Ig_CD3_epsilon Immunog 93.8 0.28 6.1E-06 22.7 4.0 37 46-93 20-56 (65)
340 cd07697 IgC_TCR_gamma T cell r 93.7 0.44 9.4E-06 23.8 7.4 62 18-93 16-84 (96)
341 cd05768 IgC_CH4 CH4 domain (fo 93.2 0.57 1.2E-05 23.6 6.4 65 18-94 16-91 (102)
342 PHA03269 envelope glycoprotein 92.7 1.8 4E-05 28.3 9.1 25 6-30 287-311 (566)
343 cd05847 IgC_CH2_IgE CH2 domain 92.6 0.68 1.5E-05 23.0 7.5 64 21-96 17-88 (94)
344 PHA02914 Immunoglobulin-like d 92.4 0.17 3.6E-06 31.9 2.7 25 7-31 345-369 (500)
345 PHA02982 hypothetical protein; 92.1 0.69 1.5E-05 26.7 4.6 38 61-98 90-127 (251)
346 cd05883 Ig2_Necl-2 Second immu 91.5 0.47 1E-05 23.0 3.2 25 7-31 43-67 (82)
347 cd05770 IgC_beta2m Class I maj 91.2 1.1 2.3E-05 22.3 10.4 61 22-94 19-83 (93)
348 PHA03282 envelope glycoprotein 91.1 0.32 7E-06 31.3 3.0 28 3-30 328-356 (540)
349 cd05769 IgC_TCR_beta T cell re 90.0 1.7 3.6E-05 22.6 8.2 70 20-101 20-99 (115)
350 KOG4597|consensus 89.5 1.1 2.3E-05 29.1 4.3 66 40-105 220-291 (560)
351 cd07696 IgC_CH3 CH3 domain (th 89.3 1.7 3.7E-05 21.6 8.8 69 15-94 11-86 (96)
352 cd04981 IgV_H Immunoglobulin ( 89.2 1.9 4.2E-05 22.2 9.6 33 60-92 63-97 (117)
353 PHA03042 CD47-like protein; Pr 89.0 3.5 7.7E-05 24.9 6.9 52 45-103 51-102 (286)
354 PHA03273 envelope glycoprotein 88.6 5 0.00011 26.2 9.9 26 7-32 197-222 (486)
355 cd04985 IgC_CH1 CH1 domain (fi 87.8 2.2 4.9E-05 21.2 6.4 63 19-94 17-87 (95)
356 PHA03283 envelope glycoprotein 86.9 1.1 2.3E-05 29.4 3.1 27 2-28 309-335 (542)
357 PF01688 Herpes_gI: Alphaherpe 86.4 2.7 5.8E-05 23.3 4.1 26 6-31 122-147 (161)
358 KOG1480|consensus 85.6 0.28 6.1E-06 33.5 0.3 27 7-33 182-208 (909)
359 PHA03283 envelope glycoprotein 84.6 9.6 0.00021 25.4 9.2 27 7-33 133-159 (542)
360 PHA03271 envelope glycoprotein 84.3 8.9 0.00019 24.9 8.9 25 6-30 205-229 (490)
361 PHA03270 envelope glycoprotein 83.4 10 0.00022 24.7 9.0 26 7-32 181-206 (466)
362 cd04986 IgC_CH2 CH2 domain (se 82.4 4.8 0.0001 20.3 4.4 27 18-55 19-47 (99)
363 PF02480 Herpes_gE: Alphaherpe 82.2 0.63 1.4E-05 29.9 0.8 27 3-29 264-290 (439)
364 KOG4597|consensus 81.8 1.7 3.7E-05 28.3 2.5 33 7-39 256-288 (560)
365 PHA03282 envelope glycoprotein 81.6 2.3 4.9E-05 27.7 2.9 24 7-30 123-146 (540)
366 cd07704 Ig2_Nectin-3-4_like Se 78.1 7.1 0.00015 19.7 5.8 55 40-95 27-85 (97)
367 PHA03281 envelope glycoprotein 77.5 3.4 7.4E-05 27.5 2.8 25 4-28 471-495 (642)
368 PHA03286 envelope glycoprotein 77.2 3.7 8.1E-05 26.6 2.9 20 9-28 308-327 (492)
369 cd05721 IgV_CTLA-4 Immunoglobu 75.6 9.6 0.00021 19.9 9.6 74 18-91 13-94 (115)
370 PHA03289 envelope glycoprotein 73.0 8.5 0.00018 23.9 3.5 26 7-32 121-146 (352)
371 PHA03290 envelope glycoprotein 71.9 10 0.00022 23.8 3.7 26 6-31 127-152 (357)
372 PF02480 Herpes_gE: Alphaherpe 71.9 1.2 2.7E-05 28.7 0.0 27 7-33 88-114 (439)
373 PHA03292 envelope glycoprotein 69.7 14 0.00031 23.6 4.0 26 6-31 126-151 (413)
374 COG5475 Uncharacterized small 64.7 12 0.00027 16.7 3.1 24 9-34 19-42 (60)
375 PHA03291 envelope glycoprotein 62.8 23 0.0005 22.5 4.0 27 6-32 127-153 (401)
376 PHA03286 envelope glycoprotein 61.6 24 0.00053 23.2 4.0 32 7-38 126-157 (492)
377 PF11327 DUF3129: Protein of u 61.6 17 0.00036 20.7 3.1 28 4-31 89-116 (184)
378 PHA03240 envelope glycoprotein 58.1 4.6 9.9E-05 23.5 0.5 22 6-27 103-124 (258)
379 PF10572 UPF0556: Uncharacteri 57.2 29 0.00062 19.3 3.4 19 79-97 68-86 (158)
380 PF11088 RL11D: Glycoprotein e 52.3 9.1 0.0002 19.2 1.0 22 8-29 60-81 (98)
381 KOG0613|consensus 51.8 7 0.00015 28.7 0.7 21 40-60 213-234 (1205)
382 PF15096 G6B: G6B family 49.1 12 0.00026 21.4 1.2 16 16-31 82-97 (224)
383 cd07689 Ig2_VCAM-1 Second immu 44.5 45 0.00097 17.0 4.4 48 45-93 33-85 (99)
384 cd05890 Ig2_Nectin-1_like Seco 44.1 45 0.00098 17.0 4.2 31 73-103 66-96 (98)
385 KOG0613|consensus 42.0 38 0.00081 25.4 2.9 28 72-99 394-421 (1205)
386 PF11781 RRN7: RNA polymerase 40.7 15 0.00033 14.7 0.7 10 17-26 20-29 (36)
387 PF13220 DUF4028: Protein of u 39.3 38 0.00083 15.0 1.8 14 82-95 9-22 (65)
388 PF10430 Ig_Tie2_1: Tie-2 Ig-l 38.8 55 0.0012 16.4 2.7 16 17-32 72-88 (96)
389 PHA03189 UL14 tegument protein 38.4 1E+02 0.0022 19.5 5.7 19 77-95 139-157 (348)
390 KOG4637|consensus 37.1 67 0.0014 20.9 3.2 31 5-37 351-381 (464)
391 PF01082 Cu2_monooxygen: Coppe 32.5 77 0.0017 16.8 2.7 24 7-30 3-27 (132)
392 PF05566 Pox_vIL-18BP: Orthopo 31.1 86 0.0019 16.4 4.4 32 72-103 94-125 (126)
393 KOG0200|consensus 29.5 57 0.0012 22.4 2.3 24 6-29 11-34 (609)
394 PF13670 PepSY_2: Peptidase pr 29.0 59 0.0013 15.5 1.8 24 11-34 44-67 (83)
395 PF09926 DUF2158: Uncharacteri 27.1 68 0.0015 14.2 1.6 23 9-31 15-40 (53)
396 PF10651 DUF2479: Domain of un 26.4 1.3E+02 0.0028 16.8 3.4 25 4-28 80-104 (170)
397 COG4935 Regulatory P domain of 25.5 1.1E+02 0.0024 17.5 2.5 20 5-24 99-118 (177)
398 PF08644 SPT16: FACT complex s 25.0 73 0.0016 17.7 1.8 16 8-23 22-37 (152)
399 PF01034 Syndecan: Syndecan do 22.3 21 0.00045 16.6 -0.5 15 11-25 32-46 (64)
400 PF06174 DUF987: Protein of un 21.5 32 0.0007 15.8 0.0 17 72-88 49-66 (66)
401 PF06059 DUF930: Domain of Unk 21.4 43 0.00093 17.1 0.5 28 22-49 66-94 (101)
402 PHA02737 hypothetical protein; 21.3 1.2E+02 0.0025 14.5 2.4 20 8-27 13-32 (72)
403 KOG0645|consensus 21.2 2.3E+02 0.0049 17.8 4.6 8 83-90 137-144 (312)
404 PRK05508 methionine sulfoxide 21.0 59 0.0013 17.3 0.9 14 17-30 28-41 (119)
No 1
>KOG3513|consensus
Probab=99.82 E-value=1.7e-19 Score=116.63 Aligned_cols=99 Identities=29% Similarity=0.482 Sum_probs=88.6
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE--------------------------------EEecC-CEEEEeeCC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR--------------------------------LTVKT-INIKWQKGD 53 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~--------------------------------~~~~p-~~~~w~~~~ 53 (108)
...|+|.+|+.+|+|.|.|.|+|..|....... +.+.| +.+.|.+++
T Consensus 385 ~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~ 464 (1051)
T KOG3513|consen 385 DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGG 464 (1051)
T ss_pred CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCC
Confidence 458999999999999999999999998877776 66788 999999998
Q ss_pred EecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEeC
Q psy2149 54 KIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLDI 108 (108)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~~ 108 (108)
..+..+.++.+..++ .|.|.+++++|+|.|+|.+.|..|.......|.|.++
T Consensus 465 ~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~ 516 (1051)
T KOG3513|consen 465 EKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDA 516 (1051)
T ss_pred cccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEEEecC
Confidence 867777788777777 8999999999999999999999999999999988763
No 2
>KOG3513|consensus
Probab=99.81 E-value=2.4e-18 Score=111.44 Aligned_cols=99 Identities=30% Similarity=0.485 Sum_probs=85.2
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE-----------------------------EEecC-CEEEEeeCCE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR-----------------------------LTVKT-INIKWQKGDK 54 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~-----------------------------~~~~p-~~~~w~~~~~ 54 (108)
+-...|.|.+++.+|+|.|.|.|.|..|....... +.|.| |.++|.+++.
T Consensus 291 ~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~ 370 (1051)
T KOG3513|consen 291 NYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGE 370 (1051)
T ss_pred ccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCe
Confidence 44678999999999999999999999987666555 77899 9999999998
Q ss_pred ecCCCCC---EEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 55 IIKPSKY---FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 55 ~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
++.+..+ ..+.. + .|.|.+++..|+|.|.|.+.|..|...+++.|.|++
T Consensus 371 pl~~~~r~~~~~i~~-g---~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a 422 (1051)
T KOG3513|consen 371 PLEPAERDPRYKIDD-G---TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA 422 (1051)
T ss_pred ecCccCCCcceEEeC-C---EEEEEecccccCeEEEeeeecccceEeeeeEEEEEc
Confidence 8875544 43333 3 799999999999999999999999999999999985
No 3
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.75 E-value=8.6e-17 Score=90.87 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=68.0
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE---------------------EE-------ecC-CEEEEeeCCEecC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR---------------------LT-------VKT-INIKWQKGDKIIK 57 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~---------------------~~-------~~p-~~~~w~~~~~~~~ 57 (108)
...|.|.+++.+|+|.|+|.+.|..+....... .. +.| |.+.|++++..+.
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~ 176 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL 176 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence 458999999999999999999998766544442 11 347 8999999999887
Q ss_pred CCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 58 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
...++.+..+.. .|.|.++..+|+|.|+|.+....
T Consensus 177 ~~~r~~~~~~~~--~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 177 YTDRIQLRNNNS--TLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCCCEEEeCCCC--EEEECcCCHHhCEEEEEEEEEeE
Confidence 666655543322 79999999999999999998754
No 4
>KOG4194|consensus
Probab=99.73 E-value=3.4e-17 Score=101.51 Aligned_cols=99 Identities=31% Similarity=0.425 Sum_probs=81.7
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE------------------------------EEecC-CEEEEeeCCEe
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR------------------------------LTVKT-INIKWQKGDKI 55 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~------------------------------~~~~p-~~~~w~~~~~~ 55 (108)
...|++.||+..|+|.|.|.+.|..|+.++... +.|.| |.+.|.+++..
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt 652 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT 652 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence 457899999999999999999999987655433 88999 99999988765
Q ss_pred -cCCC--CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 56 -IKPS--KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 56 -~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
++.. .+.++..+++ .+.|.++..+|.|.|+|.+.|..|.-++.+.|.|.+
T Consensus 653 dFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e 705 (873)
T KOG4194|consen 653 DFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE 705 (873)
T ss_pred CCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEec
Confidence 4432 3445554444 788899999999999999999999999999999875
No 5
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.69 E-value=1.9e-15 Score=71.83 Aligned_cols=66 Identities=29% Similarity=0.390 Sum_probs=56.6
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+....+..+........|.|.++...|.|.|+|.+.|..|.....+.|.|
T Consensus 8 ~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 8 ISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 67899 9999999998886666666655555668999999999999999999999999998888765
No 6
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.68 E-value=2.7e-15 Score=74.89 Aligned_cols=68 Identities=28% Similarity=0.324 Sum_probs=59.4
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
+.|.| +.+.|++++..+....++.+......+.|.|.++..+|.|.|+|.+.|..|...+.+.|.|.+
T Consensus 24 ~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~ 92 (98)
T cd05762 24 VTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVD 92 (98)
T ss_pred EcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEec
Confidence 56788 999999999988766666666555666899999999999999999999999999999999876
No 7
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.67 E-value=3e-15 Score=71.23 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=54.1
Q ss_pred EEecC-CEEEEeeCCEecCCC-CCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS-KYFQMSKE-GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+... .++.+..+ .....|.|.++..+|.|.|+|.+.|..|...+.+.|.|
T Consensus 7 v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 7 ISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred EEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57889 999999999887643 45555433 33357999999999999999999999999999988865
No 8
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.66 E-value=4.6e-15 Score=70.00 Aligned_cols=63 Identities=38% Similarity=0.650 Sum_probs=53.0
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+.+..++.+.... .|.+.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 8 ~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 8 VTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 56889 999999999887666666655554 5777899999999999999999999999988865
No 9
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.65 E-value=3.2e-15 Score=70.84 Aligned_cols=63 Identities=27% Similarity=0.467 Sum_probs=53.5
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+....++.+..+. .|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 10 ~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 10 PKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred cceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 55788 999999998877666666665444 7999999999999999999999999999988865
No 10
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.64 E-value=1.5e-14 Score=68.85 Aligned_cols=66 Identities=29% Similarity=0.381 Sum_probs=53.5
Q ss_pred EEecC-CEEEEeeCCEecCCC-CCEEEEEeC-CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS-KYFQMSKEG-DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+... .++.+.... ....|.|.++..+|.|.|+|.+.|..|....++.|.|
T Consensus 7 v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 7 VSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 67899 999999999887643 345444332 3346999999999999999999999999999988865
No 11
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.63 E-value=2.5e-14 Score=69.86 Aligned_cols=68 Identities=25% Similarity=0.329 Sum_probs=56.3
Q ss_pred EEEEecC-CEEEEeeCCEecCCC-CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 38 ARLTVKT-INIKWQKGDKIIKPS-KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 38 ~~~~~~p-~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.+.|.| |.+.|++++..+... .++.+........|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus 17 c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 17 VPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred eeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 3477899 999999999888654 3555555555668999999999999999999999999998888765
No 12
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.63 E-value=2.4e-14 Score=69.07 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=52.0
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEE--E-----eCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMS--K-----EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~--~-----~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.++|++++..+......... . ......|.|.++...|.|.|+|.+.|..|.....+.+.+
T Consensus 7 v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 7 VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 67899 999999999888765433221 1 123447999999999999999999999999998877653
No 13
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.62 E-value=5.5e-15 Score=70.28 Aligned_cols=63 Identities=32% Similarity=0.429 Sum_probs=52.2
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+....+....... .|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus 11 ~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 11 AQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCEecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 56889 999999999887655444443333 7999999999999999999999999999888865
No 14
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.62 E-value=4e-14 Score=67.44 Aligned_cols=66 Identities=26% Similarity=0.394 Sum_probs=53.2
Q ss_pred EEecC-CEEEEeeCCEecCCC-CCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS-KYFQMSKE-GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+... .++.+... .....|.|.+++.+|.|.|+|.+.|..|.....+.|.|
T Consensus 7 v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 7 VSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred EeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57899 999999999887643 34444333 23447999999999999999999999999999888764
No 15
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.61 E-value=1.5e-14 Score=67.90 Aligned_cols=61 Identities=30% Similarity=0.476 Sum_probs=51.4
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l 103 (108)
+.|.| |.+.|++++..+....++.+.... .|.|.++..+|.|.|+|.+.|..|....++.|
T Consensus 7 ~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 7 AQGDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred ceEeCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 46889 999999999887666665554444 79999999999999999999999999888776
No 16
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.59 E-value=6.5e-14 Score=69.21 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=54.7
Q ss_pred EEEecC-CEEEEeeCCEecCCCCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 39 RLTVKT-INIKWQKGDKIIKPSKYFQMSKE-GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 39 ~~~~~p-~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
.+.|.| |.+.|++++..+....++.+... .....|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 24 ~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 24 TVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 356889 99999999988876666555433 33457999999999999999999999999988887764
No 17
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.59 E-value=4.9e-14 Score=67.49 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=51.2
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEE----E-EeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQM----S-KEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~----~-~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~ 104 (108)
+.|.| |.++|++++..+........ . .......|.|..+...|.|.|+|.|.|..|.....+.+.
T Consensus 7 v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 7 VKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 67999 99999999998875543221 1 112334799999999999999999999999988877664
No 18
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=3.3e-14 Score=67.04 Aligned_cols=63 Identities=19% Similarity=0.412 Sum_probs=49.6
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+..... .... ....|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 7 ~~G~P~P~v~W~k~~~~~~~~~~-~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 7 AEGLPTPEVHWDRIDGPLSPNRT-KKLN--NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred eeEecCCeEEEEECCcCCCCCce-eEEc--CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 56889 99999999876644322 2211 2238999999999999999999999999998888876
No 19
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=3.7e-14 Score=67.24 Aligned_cols=63 Identities=30% Similarity=0.482 Sum_probs=53.1
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.+.| |.+.|++++..+....+..+.... .|.|.++..+|.|.|+|.+.|..|....++.|.|
T Consensus 10 ~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 10 PKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred eeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 45778 999999999887666666554444 7999999999999999999999999999988875
No 20
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.58 E-value=1.1e-13 Score=66.11 Aligned_cols=68 Identities=29% Similarity=0.329 Sum_probs=53.4
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
+.|.| |.+.|++++..+.+....++........|.|.++..+|.|.|+|.+.|..|.....+.|.|.+
T Consensus 7 v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 7 AEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred eeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 45788 999999998877654332232222223799999999999999999999999999999998864
No 21
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.57 E-value=7.4e-14 Score=64.93 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=47.9
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
+.|.| |.+.|++++..+.... ....|.|.++..+|.|.|+|.+.|..|..+....+.|.
T Consensus 7 v~g~P~P~v~W~kdg~~l~~~~--------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 7 VAAYPPPEFQWYKDGKLISGKH--------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred EEEeCCCEEEEEECCEECcccC--------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 67899 9999999998874221 22279999999999999999999999987777766653
No 22
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.56 E-value=6.6e-14 Score=65.74 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=49.5
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
+.|.| |.+.|++++.++...... ... ..|.|.++..+|.|.|+|.+.|..|..+....+.+.
T Consensus 7 v~G~P~P~v~W~k~g~~l~~~~~~--~~~---~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 7 YYGYPPPEVKWYKNGQLIVLNHTF--KRG---VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred EEEeCCCEEEEEECCEECCCCCEE--ccC---CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 67899 999999999888654322 222 279999999999999999999999988877766653
No 23
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.56 E-value=5.5e-13 Score=79.34 Aligned_cols=91 Identities=12% Similarity=0.226 Sum_probs=64.6
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE----E-------------------------------EEecC-C---EE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA----R-------------------------------LTVKT-I---NI 47 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~----~-------------------------------~~~~p-~---~~ 47 (108)
...|.|.+++.+|+|.|+|.+.|..+...... . +.+.| + .+
T Consensus 176 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v 255 (326)
T PHA02785 176 PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADV 255 (326)
T ss_pred CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceE
Confidence 35899999999999999999998766432211 0 55556 3 79
Q ss_pred EEeeCCEecCCC-----CCEEEEEe--------CCEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2149 48 KWQKGDKIIKPS-----KYFQMSKE--------GDSYVLRISEAFPEDEGQYKCIATNQGGQV 97 (108)
Q Consensus 48 ~w~~~~~~~~~~-----~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~ 97 (108)
.|.+++..+... .+...... .....|.|.++..+|.|.|+|.+.|..+..
T Consensus 256 ~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 256 FWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred EEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 999999876432 11111110 013479999999999999999999987433
No 24
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.56 E-value=1.1e-13 Score=69.39 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=53.5
Q ss_pred EEEecC-CEEEEeeCCEecCCCCCEEEEEe------CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 39 RLTVKT-INIKWQKGDKIIKPSKYFQMSKE------GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 39 ~~~~~p-~~~~w~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
.+.|.| |.+.|++++.++........... .....|.|.++..+|.|.|+|.+.|..|....++.|.|.
T Consensus 26 ~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 26 EVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred EEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 378899 99999999998865443222111 123479999999999999999999999999988888875
No 25
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.55 E-value=4.1e-13 Score=66.07 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=52.3
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+................|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 24 ~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 24 AEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 56789 9999999998775443322333334558999999999999999999999999999888764
No 26
>KOG4221|consensus
Probab=99.55 E-value=1e-13 Score=91.24 Aligned_cols=98 Identities=23% Similarity=0.354 Sum_probs=75.6
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE---E---------------------------------EEecC-CEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA---R---------------------------------LTVKT-INIKW 49 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~---~---------------------------------~~~~p-~~~~w 49 (108)
++.|.|.+++.+|.|.|+|.+.+......+.. . +.+.| |.|.|
T Consensus 192 sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~W 271 (1381)
T KOG4221|consen 192 SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKW 271 (1381)
T ss_pred CCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEE
Confidence 56899999999999999999998754322211 1 77788 99999
Q ss_pred eeCCEecCCCC-CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 50 QKGDKIIKPSK-YFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
.+++..+.... ++.+.... .|.|.+++..|+|.|+|.+.|......+.+.|.|+.
T Consensus 272 lrng~~i~~ds~rivl~g~~---slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a 327 (1381)
T KOG4221|consen 272 LRNGEKISVDSYRIVLVGGS---SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA 327 (1381)
T ss_pred eeCCeeeeecceEEEEeccc---ceEEeccccccCceEEEEecCCCcccccceEEEEEc
Confidence 99988775443 22222223 799999999999999999999877777788888775
No 27
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.54 E-value=3.1e-13 Score=67.74 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=55.4
Q ss_pred eEEEEEEEe-cC-CEEEEeeCCEecCCCCCEEEEEeC-----CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 34 VESTARLTV-KT-INIKWQKGDKIIKPSKYFQMSKEG-----DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 34 ~~~~~~~~~-~p-~~~~w~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
....+.+.| .| |.+.|++++..+............ ....|.|..+..+|.|.|+|.+.|..|.....+.|.|.
T Consensus 21 v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 21 LNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 333444778 78 999999999888654332222111 13479999999999999999999999999999988875
No 28
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.54 E-value=3.6e-13 Score=64.61 Aligned_cols=65 Identities=25% Similarity=0.273 Sum_probs=52.0
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~ 104 (108)
+.|.| |.+.|++++..+....++..........|.|.++..+|.|.|.|.+.|..|.......+.
T Consensus 10 ~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 10 ATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred EEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 45789 999999998777665566555555556899999999999999999999999887755443
No 29
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.54 E-value=5e-13 Score=66.02 Aligned_cols=65 Identities=22% Similarity=0.349 Sum_probs=54.3
Q ss_pred EEEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy2149 39 RLTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103 (108)
Q Consensus 39 ~~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l 103 (108)
.+.+.| |.+.|++++..+....++.+........|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus 26 ~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 26 DVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 367889 99999999988766666666555555689999999999999999999999998887766
No 30
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.54 E-value=3.3e-13 Score=63.62 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=50.3
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
+.|.| |.+.|++++..+....+... . ...|.|.++..+|+|.|+|.+.|..|.....+.+.|.
T Consensus 7 v~g~P~p~v~W~k~g~~l~~~~~~~~-~---~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 7 VKAYPPPEIQWYKNGKLISEKNRTKK-S---GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred EEEeCCCEEEEEECCEECCCCCEEEc-C---CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 56889 99999999988765533221 1 2379999999999999999999999988887776654
No 31
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.53 E-value=4.6e-13 Score=65.77 Aligned_cols=66 Identities=29% Similarity=0.578 Sum_probs=58.9
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.+.| +.+.|++++..+....+..+........|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 24 ~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 24 VSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 45668 9999999999988877888887778889999999999999999999999999998888875
No 32
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.53 E-value=7.7e-13 Score=78.72 Aligned_cols=85 Identities=16% Similarity=0.323 Sum_probs=61.4
Q ss_pred EEEEcCCCCCCceEEEEEEECCCcCeEEEEE------------------------------------EEecC-CEEEEee
Q psy2149 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTAR------------------------------------LTVKT-INIKWQK 51 (108)
Q Consensus 9 ~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~------------------------------------~~~~p-~~~~w~~ 51 (108)
.|.|.++..+|+|.|+|.+.|..+....... ..+.| +.+.|++
T Consensus 83 ~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k 162 (326)
T PHA02785 83 NMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSG 162 (326)
T ss_pred eEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEcc
Confidence 5889999999999999999998764443321 12456 8899976
Q ss_pred CCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2149 52 GDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98 (108)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~ 98 (108)
+. .+ ...++....+. .|.|.+++.+|.|.|+|.+.|..+...
T Consensus 163 ~~-~~-~~~r~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~g~~~ 204 (326)
T PHA02785 163 HR-RL-RNKRLKQRTPG---IITIEDVRKNDAGYYTCVLKYIYGDKT 204 (326)
T ss_pred CC-cc-CCcceEecCCC---eEEEeecChhhCeEEEEEEEeccCCEE
Confidence 53 22 22233222222 799999999999999999999877654
No 33
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.53 E-value=2.4e-13 Score=63.75 Aligned_cols=62 Identities=26% Similarity=0.422 Sum_probs=49.5
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+.. .++...... .|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus 7 ~~g~P~p~v~W~k~~~~~~~-~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 7 VGGDPVPTVLWRKEDGELPK-GRAEILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CccCCCCEEEEEECCccCCC-CcEEEeeCC---EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 45788 99999998766533 344444333 7999999999999999999999999988888764
No 34
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.53 E-value=5.1e-13 Score=66.35 Aligned_cols=66 Identities=24% Similarity=0.416 Sum_probs=52.9
Q ss_pred EEecC-CEEEEeeCCEecCCC-CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS-KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
+.|.| |.+.|++++..+... .++.+.. ....|.|.++..+|.|.|+|.+.|..|.....+.|.|..
T Consensus 27 ~~g~P~p~v~W~k~g~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 27 ADGFPEPTMTWTKDGEPIESGEEKYSFNE--DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred ccEeCCCEEEEEECCEECcCCCCEEEEeC--CCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence 45788 999999999877554 3333322 223799999999999999999999999999999999875
No 35
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.52 E-value=8.7e-13 Score=62.97 Aligned_cols=62 Identities=24% Similarity=0.448 Sum_probs=49.9
Q ss_pred EEecC-CEEEEeeCCEecCCCC---CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSK---YFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+.... +... ... .|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 10 ~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 10 VEGIPTPNITWSINGAPIEGTDPDPRRHV-SSG---ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred eeEeCCCeEEEEECCEECCCCCCCceEEe-eCC---EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 56789 9999999998775432 2222 222 7999999999999999999999999999888876
No 36
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.52 E-value=2e-13 Score=64.99 Aligned_cols=65 Identities=32% Similarity=0.454 Sum_probs=49.0
Q ss_pred EEecC-CEEEEeeCCEecCCC---CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS---KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
+.|.| |.++|++++....+. .++...... ..|.|.++..+|.|.|.|.+.|..|.....+.|.|+
T Consensus 7 ~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 7 ATGHPTPQIAWQKDGGTDFPAARERRMHVMPED--DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred cccccCCEEEEEeCCCccCCcccccceEEecCC--CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 46789 999999987532221 223332222 278999999999999999999999999989888873
No 37
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.52 E-value=5.5e-13 Score=63.82 Aligned_cols=66 Identities=23% Similarity=0.423 Sum_probs=49.9
Q ss_pred EEecC-CEEEEeeCCEecCCCC-CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEE--EEEEEEEe
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSK-YFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL--TANLKVLD 107 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~--~~~l~v~~ 107 (108)
+.|.| |.+.|++++..+.... .+.+.... ..|.|.++..+|.|.|.|.+.|..|.... .+.|.|.+
T Consensus 7 ~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d 76 (77)
T cd05760 7 IDGHPRPTYQWFRDGTPLSDGQGNYSVSSKE--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID 76 (77)
T ss_pred eeecCCCcEEEEECCEECCCCCccEEEeCCC--CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence 56889 9999999998875543 33333222 27999999999999999999999998754 56666654
No 38
>KOG4194|consensus
Probab=99.52 E-value=7.4e-14 Score=87.11 Aligned_cols=95 Identities=27% Similarity=0.400 Sum_probs=75.2
Q ss_pred EEEEcCCCCCCceEEEEEEECCCcCeEEEEE-----------------------------EEecC--CEEEEeeCCEecC
Q psy2149 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTAR-----------------------------LTVKT--INIKWQKGDKIIK 57 (108)
Q Consensus 9 ~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~-----------------------------~~~~p--~~~~w~~~~~~~~ 57 (108)
.+-|.||..+|+|.|+|.|.|.+|....... +.+.| |.+.|+++++++.
T Consensus 670 ~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil 749 (873)
T KOG4194|consen 670 VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPIL 749 (873)
T ss_pred EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceE
Confidence 6789999999999999999999998776655 55666 8999999987765
Q ss_pred CCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 58 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
...+.+++.++. .+.+.....+|.|.|+|..++..+.....+.+.+
T Consensus 750 ~t~rh~f~d~dQ--llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~ 795 (873)
T KOG4194|consen 750 ITERHTFPDGDQ--LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLV 795 (873)
T ss_pred EeecccCCCCCe--EEEEEehhhhhcceEEEEEEeeccceeeEEEEEE
Confidence 555444444432 5777888899999999999999987777665544
No 39
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.52 E-value=4.7e-13 Score=63.59 Aligned_cols=63 Identities=29% Similarity=0.454 Sum_probs=48.9
Q ss_pred EEecC-CEEEEeeCCEecCC--CCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceE-EEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKP--SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV-LTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~-~~~~l~v 105 (108)
+.|.| |.+.|++++..+.. ..++....++ .|.|.++..+|.|.|.|.+.|..|... ..+.|.|
T Consensus 7 ~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g---~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 7 ASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EeEecCCEEEEEECCEECccCCCCCEEEcCCc---EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 56889 99999999887752 3444443333 689999999999999999999999864 4777765
No 40
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.52 E-value=2.9e-13 Score=63.74 Aligned_cols=63 Identities=24% Similarity=0.343 Sum_probs=49.0
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+... ...... ....|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus 7 ~~g~P~p~v~W~k~~~~~~~~-~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 7 AEGLPTPEISWIKIGGELPAD-RTKFEN--FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred eeEecCCeEEEEECCeECCCC-ceeEec--CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 56789 999999988765432 222221 2237999999999999999999999999988888876
No 41
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=9.7e-13 Score=64.49 Aligned_cols=64 Identities=31% Similarity=0.373 Sum_probs=50.5
Q ss_pred EEEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 39 RLTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 39 ~~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
.+.|.| |.+.|++++..+....+. .... ..|.|.++..+|.|.|.|.+.|..|.....+.|.|+
T Consensus 24 ~~~G~P~P~v~W~k~~~~~~~~~~~--~~~~--~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 24 FALGNPVPVIRWRKILEPMPATAEI--SMSG--AVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred EecccCCCEEEEEECCcCCCCCCEE--ecCC--CEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 356889 999999988766443322 2222 279999999999999999999999999999888773
No 42
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.51 E-value=6.3e-13 Score=63.47 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=50.2
Q ss_pred EEecC-CEEEEeeCCEecCCCCC-EEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKY-FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
+.|.| |.+.|++++..+..... .....++. .|.+.++...|.|.|.|.+.|..|...+++.|.|.
T Consensus 10 a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 10 ANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred eeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 45789 99999999987753321 11112222 68889999999999999999999999999998873
No 43
>KOG4222|consensus
Probab=99.51 E-value=4.8e-14 Score=92.22 Aligned_cols=98 Identities=27% Similarity=0.448 Sum_probs=78.4
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE------------------------------EEecC-CEEEEeeCCEe
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR------------------------------LTVKT-INIKWQKGDKI 55 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~------------------------------~~~~p-~~~~w~~~~~~ 55 (108)
.+.|.|.+++.+|+|.|.|++.|..|...+..- +.|+| |.+.|.+.+..
T Consensus 186 gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~ 265 (1281)
T KOG4222|consen 186 GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPS 265 (1281)
T ss_pred CCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCC
Confidence 358999999999999999999999876433321 77899 99999997666
Q ss_pred cCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 56 IKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 56 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
++. .++.+..+. ..+.|.++...|+|.|.|.+.|.+|..+....++|++
T Consensus 266 ~P~-~ry~i~~d~--qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a 314 (1281)
T KOG4222|consen 266 LPR-SRYSILDDT--QTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA 314 (1281)
T ss_pred CCc-cceeeeecc--ccccccccCCCcccceeeeccccccccccccceEEec
Confidence 533 344444331 1788999999999999999999999999999998875
No 44
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.50 E-value=5e-13 Score=63.73 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=50.6
Q ss_pred EEecC-CEEEEeeCCEecCCCCCE-EEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYF-QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
+.|.| |.+.|++++..+...... .... ....|.|.++..+|.|.|.|.+.|..|...+.+.|.|+
T Consensus 10 ~~g~P~p~i~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 10 AEGIPQPTITWRLNGVPIEELPPDPRRRV--DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred ceeeCCCEEEEEECCEECCCCCCcceEEc--cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 45788 999999999877544321 1111 12279999999999999999999999999999888873
No 45
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.50 E-value=2e-12 Score=63.38 Aligned_cols=68 Identities=28% Similarity=0.431 Sum_probs=53.7
Q ss_pred EEecC-CEEEEeeCCEecCCC-CCEEEEEe----CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS-KYFQMSKE----GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
+.|.| +.+.|.+++..+... .++.+... .....|.|.++..+|.|.|+|.+.|..|.....+.|.|.+
T Consensus 10 ~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~ 83 (88)
T cd05735 10 AHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQE 83 (88)
T ss_pred EECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeC
Confidence 45778 999999999877543 34443321 1224799999999999999999999999999999999875
No 46
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.50 E-value=4.7e-12 Score=61.67 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=52.0
Q ss_pred EEecC-C--EEEEeeCCEecCCC---CCE-EEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEeC
Q psy2149 40 LTVKT-I--NIKWQKGDKIIKPS---KYF-QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLDI 108 (108)
Q Consensus 40 ~~~~p-~--~~~w~~~~~~~~~~---~~~-~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~~ 108 (108)
+.|.| | .+.|++++..+... .++ .+........|.|.+++..|.|.|+|.+.|..|...+.+.|.|..+
T Consensus 9 a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~ 84 (85)
T cd05854 9 ASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGP 84 (85)
T ss_pred EecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECC
Confidence 45667 5 68999998876432 222 1222223348999999999999999999999999999999998753
No 47
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.49 E-value=3.6e-12 Score=62.02 Aligned_cols=78 Identities=22% Similarity=0.389 Sum_probs=56.8
Q ss_pred CCCCCceEEEEEEECCCcCeEEEEEEEecC-CEEEEeeCCEecCCCCCE-EEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy2149 15 TYEEDSGLFTLRAVNSAGQVESTARLTVKT-INIKWQKGDKIIKPSKYF-QMSKEGDSYVLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 15 v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p-~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n 92 (108)
+...+.-...|.+ .|.| |.+.|++++..+...... ..........|.|.++..+|.|.|+|.+.|
T Consensus 6 v~~G~~~~L~C~~-------------~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N 72 (85)
T cd05857 6 VPAANTVKFRCPA-------------AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 72 (85)
T ss_pred cCCCCEEEEEEEc-------------CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEe
Confidence 4455556666654 3567 999999999887654332 111122234688999999999999999999
Q ss_pred CCcceEEEEEEEE
Q psy2149 93 QGGQVVLTANLKV 105 (108)
Q Consensus 93 ~~~~~~~~~~l~v 105 (108)
..|.....+.|.|
T Consensus 73 ~~G~~~~~~~l~v 85 (85)
T cd05857 73 EYGSINHTYHLDV 85 (85)
T ss_pred CCCEEEEEEEEEC
Confidence 9999999888865
No 48
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.48 E-value=1.7e-12 Score=64.72 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=50.3
Q ss_pred EEecC-CEEEEeeCCEecCCC-----CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS-----KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+... .++..........|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 26 ~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 26 ASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred eeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 45778 999999987655322 1222233334458999999999999999999999999999888865
No 49
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.47 E-value=7.6e-13 Score=65.14 Aligned_cols=65 Identities=32% Similarity=0.440 Sum_probs=49.9
Q ss_pred EEecC-CEEEEeeCCEec--------CCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 40 LTVKT-INIKWQKGDKII--------KPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
+.+.| |.+.|++++..+ ....++.+.... .|.|.++..+|+|.|.|.+.|..|.....+.|.|.+
T Consensus 10 ~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 83 (90)
T cd05726 10 ATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD 83 (90)
T ss_pred CCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence 34678 999999886532 112333333233 799999999999999999999999999999999875
No 50
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.47 E-value=2.2e-12 Score=60.77 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=47.9
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++.++...... ....+. .|.|.++..+|+|.|+|.+.|..........+++
T Consensus 7 v~g~P~P~v~W~kdg~~l~~~~~~-~~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 7 VKAFPAPEVIWLKDGLPAAEKCSR-YHVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred EEEcCCCeEEEEECCEECCCCCcE-EEeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 67899 999999999887654221 222222 7999999999999999999998777766665554
No 51
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.47 E-value=1.3e-12 Score=62.01 Aligned_cols=63 Identities=27% Similarity=0.440 Sum_probs=48.0
Q ss_pred EEecC-CEEEEee-CCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQK-GDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.+.| |.+.|.+ ++..+....+....... .|.|..+..+|.|.|+|.+.|..|..+..+.|.|
T Consensus 10 ~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 10 ARGDPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred ccCcCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 45678 9999996 45555444444333333 7888999999999999999999999888887764
No 52
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.46 E-value=1.5e-12 Score=63.47 Aligned_cols=62 Identities=26% Similarity=0.498 Sum_probs=50.7
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+....+... .+. .|.|.++..+|.|.|.|.+.|..|....++.|.|
T Consensus 23 ~~g~p~p~v~W~k~g~~~~~~~~~~~-~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 23 ASGNPRPAYRWLKNGQPLASENRIEV-EAG---DLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred eeEeCCCEEEEEECCEECCCCCeEEE-eCC---EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 45778 99999999988765544443 223 7999999999999999999999999998888765
No 53
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.46 E-value=3.3e-12 Score=63.08 Aligned_cols=66 Identities=24% Similarity=0.343 Sum_probs=52.2
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKE-GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.+.| |.+.|++++..+.....+..... .....|.|.++..+|+|.|.|.+.|..|.....+.|+|
T Consensus 25 v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 25 VFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 55778 99999999987765554443322 23347999999999999999999999999998888764
No 54
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=2.6e-12 Score=62.97 Aligned_cols=63 Identities=30% Similarity=0.388 Sum_probs=49.8
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
+.|.| |.+.|++++..+....... .... .|.|.+++.+|+|.|.|.+.|..|.....+.|.|.
T Consensus 25 ~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 25 ALGNPVPQIKWRKVDGSMPSSAEIS-MSGA---VLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred eeEeCCCEEEEEECCCcCCCccEEE-EeCC---EEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence 56788 9999999876554433222 2223 89999999999999999999999999999888773
No 55
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.45 E-value=2.2e-12 Score=61.35 Aligned_cols=62 Identities=27% Similarity=0.425 Sum_probs=47.7
Q ss_pred Ee-cC-CEEEEeeCCEecCCCCCE---EEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEE
Q psy2149 41 TV-KT-INIKWQKGDKIIKPSKYF---QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102 (108)
Q Consensus 41 ~~-~p-~~~~w~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~ 102 (108)
.+ .| |.+.|++++..+...... .+........|.|..+..+|.|.|+|.+.|..|.....+.
T Consensus 8 ~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 8 TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 45 78 999999998877654332 2333334558999999999999999999999998877654
No 56
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.43 E-value=4.2e-12 Score=63.14 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=49.6
Q ss_pred EEecC-CEEEEeeCCEecCCC-----CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS-----KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.+.| |.+.|++++..+... .++..........|.|.++..+|.|.|.|.+.|..|....++.|.|
T Consensus 25 ~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 25 AEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 45678 999999987554322 1223322334458999999999999999999999999988888764
No 57
>KOG4221|consensus
Probab=99.43 E-value=1.2e-13 Score=90.97 Aligned_cols=97 Identities=34% Similarity=0.616 Sum_probs=78.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE-----------------------------EEecC-CEEEEeeCCEe
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR-----------------------------LTVKT-INIKWQKGDKI 55 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~-----------------------------~~~~p-~~~~w~~~~~~ 55 (108)
+..+|.|.+++..|+|.|+|+|.|.......+.. +.+.| +.+.|++++..
T Consensus 289 g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~ 368 (1381)
T KOG4221|consen 289 GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDR 368 (1381)
T ss_pred cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcc
Confidence 4568999999999999999999985443333322 66678 99999999988
Q ss_pred cCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 56 IKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 56 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
..++..+++..+. .+.|..+...|.|.|.|.++|..|.....+.|.+
T Consensus 369 ~ipsdy~ki~~~~---~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~v 415 (1381)
T KOG4221|consen 369 IIPSDYFKIVGGG---NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEV 415 (1381)
T ss_pred cCcccceEecCCC---CcEEEEEecccchhhhhhhccCcccccchhhhee
Confidence 8787777776655 3777778889999999999999999998887743
No 58
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.43 E-value=1.8e-11 Score=61.16 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=48.2
Q ss_pred EEecC-CEEEEeeC--CEecCC-----CCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKG--DKIIKP-----SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++. +..+.. ..++.+........|.|.++..+|.|.|.|.+.|..|....++.|.|
T Consensus 25 ~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 25 AEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred cccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 45678 99999984 333321 12344433333457999999999999999999999999988888764
No 59
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.41 E-value=9.2e-12 Score=60.63 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=50.4
Q ss_pred EEecC-C--EEEEeeCCEecCCC---CCEE-EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEeC
Q psy2149 40 LTVKT-I--NIKWQKGDKIIKPS---KYFQ-MSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLDI 108 (108)
Q Consensus 40 ~~~~p-~--~~~w~~~~~~~~~~---~~~~-~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~~ 108 (108)
+.+.| | .+.|++++..+... ..+. .........|.|.+++..|.|.|+|.+.|..|.....+.|.|..+
T Consensus 9 ~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p 84 (85)
T cd04970 9 ASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGP 84 (85)
T ss_pred EecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECC
Confidence 44666 5 67899998876432 1121 111122237999999999999999999999999999999998753
No 60
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.41 E-value=4.4e-12 Score=61.57 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=50.2
Q ss_pred CEEEEeeCCEecCC---CCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEeC
Q psy2149 45 INIKWQKGDKIIKP---SKYFQMSKE-GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLDI 108 (108)
Q Consensus 45 ~~~~w~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~~ 108 (108)
+.+.|++++..+.. ..++..... .....|.|.+++..|.|.|+|.+.|..+....++.|.|+.|
T Consensus 17 ~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~p 84 (85)
T cd05853 17 IVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGP 84 (85)
T ss_pred cEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecC
Confidence 78999999988852 223333211 12227999999999999999999999999999999999864
No 61
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.40 E-value=1.4e-11 Score=61.24 Aligned_cols=77 Identities=25% Similarity=0.443 Sum_probs=54.3
Q ss_pred CCCCceEEEEEEECCCcCeEEEEEEEecC--CEEEEee-CCEecCC-CCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEE
Q psy2149 16 YEEDSGLFTLRAVNSAGQVESTARLTVKT--INIKWQK-GDKIIKP-SKYFQMSKE-GDSYVLRISEAFPEDEGQYKCIA 90 (108)
Q Consensus 16 ~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~ 90 (108)
...+.-.+.|.+ .|.| |.+.|++ ++..+.. ..++..... .....|.|.++..+|.|.|+|.+
T Consensus 13 ~~G~~v~l~C~v-------------~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 13 SVGESKFFLCQV-------------AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred CCCCeEEEEEEE-------------eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEE
Confidence 345555666655 4666 5999997 5655444 233333322 23458999999999999999999
Q ss_pred EcCC-cceEEEEEEEE
Q psy2149 91 TNQG-GQVVLTANLKV 105 (108)
Q Consensus 91 ~n~~-~~~~~~~~l~v 105 (108)
.|.. |....++.|.|
T Consensus 80 ~N~~~g~~~~s~~l~v 95 (96)
T cd05865 80 SNEDEGESEATVNVKI 95 (96)
T ss_pred EcCCCCcEEEEEEEEE
Confidence 9996 88888888876
No 62
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.38 E-value=1.7e-11 Score=59.17 Aligned_cols=64 Identities=25% Similarity=0.522 Sum_probs=48.1
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.+.| |.+.|++++..+....... .......|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus 18 ~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 18 ASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 44678 9999999987664432221 1223347999999999999999999999998888777654
No 63
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.38 E-value=9.6e-12 Score=61.19 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=47.7
Q ss_pred EEecC-CEEEEeeC----CEecCCCCC--EEEEEe-------CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKG----DKIIKPSKY--FQMSKE-------GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~----~~~~~~~~~--~~~~~~-------~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.+.| |.+.|++. +..+.+... ...... .....|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 10 ~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 10 VYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred EecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 56789 99999984 222222211 111111 12247999999999999999999999999999999887
Q ss_pred E
Q psy2149 106 L 106 (108)
Q Consensus 106 ~ 106 (108)
+
T Consensus 90 ~ 90 (90)
T cd05858 90 L 90 (90)
T ss_pred C
Confidence 3
No 64
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.37 E-value=1.8e-11 Score=57.37 Aligned_cols=58 Identities=21% Similarity=0.434 Sum_probs=43.8
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l 103 (108)
+.|.| |.+.|++++..+........ . ...|.|.++. |.|.|+|.+.|..|....++.|
T Consensus 10 a~G~P~P~v~W~k~g~~l~~~~~~~~--~--~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 10 AVGAPMPYVKWMKGGEELTKEDEMPV--G--RNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred eeecCCCEEEEEECCEECCCccceec--C--ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 56889 99999999987754433221 1 1267777764 7899999999999998887765
No 65
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.37 E-value=4.7e-11 Score=57.38 Aligned_cols=73 Identities=19% Similarity=0.354 Sum_probs=54.5
Q ss_pred CCCCceEEEEEEECCCcCeEEEEEEEecCCEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2149 16 YEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95 (108)
Q Consensus 16 ~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~ 95 (108)
...+.-...|.+... ++.+.|++++..+....++.+. .. .|.|.++..+|+|.|.|.+.|..|
T Consensus 7 ~~G~~v~l~C~~~~~-------------~~~v~W~k~g~~l~~~~~~~~~-~~---~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 7 HPGDLLQLRCRLRDD-------------VQSINWTKDGVQLGENNRTRIT-GE---EVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred cCCCCEEEEEEecCC-------------CceEEEeeCCcCCCCCceEEEe-CC---EEEECCCChhhCEEEEEEEeCCCC
Confidence 345566777776431 1678899999888665555443 23 799999999999999999999998
Q ss_pred ceEEEEEEEE
Q psy2149 96 QVVLTANLKV 105 (108)
Q Consensus 96 ~~~~~~~l~v 105 (108)
.....+.|.|
T Consensus 70 ~~~~~~~v~V 79 (79)
T cd04973 70 SDTTYFSVNV 79 (79)
T ss_pred cccEEEEEeC
Confidence 8877776654
No 66
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.36 E-value=9.7e-12 Score=61.19 Aligned_cols=67 Identities=30% Similarity=0.448 Sum_probs=47.4
Q ss_pred EEecC-CEEEEeeCC----EecCCC--CCEEEEE-------eCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGD----KIIKPS--KYFQMSK-------EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~----~~~~~~--~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.| |.+.|++++ ..+... ....... ......|.|.++..+|.|.|+|.+.|..|...+++.|.|
T Consensus 10 v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 10 VYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred EeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 56889 999999863 222111 1111111 112237899999999999999999999999999999887
Q ss_pred E
Q psy2149 106 L 106 (108)
Q Consensus 106 ~ 106 (108)
.
T Consensus 90 ~ 90 (90)
T cd04974 90 L 90 (90)
T ss_pred C
Confidence 3
No 67
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.36 E-value=1e-11 Score=59.39 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=41.3
Q ss_pred EEecC-CEEEEeeCCEecCCCC--CEEEEEeCCEEEEEEccCCC----CCCeEEEEEEEcCCcceEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSK--YFQMSKEGDSYVLRISEAFP----EDEGQYKCIATNQGGQVVL 99 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~----~d~g~y~c~~~n~~~~~~~ 99 (108)
+.|.| |.+.|++++..+.... ....... ...|.|..+.. +|.|.|.|.+.|..|...+
T Consensus 7 ~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~--~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 7 AKGNPPPTFSWTRNGTHFDPEKDPRVTMKPD--SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CcccCCCeEEEEECCeECCCCCCCCEEEeCC--CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 45789 9999999988775432 2322222 22677777643 6899999999999997665
No 68
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.36 E-value=3e-11 Score=58.85 Aligned_cols=60 Identities=32% Similarity=0.514 Sum_probs=45.8
Q ss_pred ecC-CEEEEeeCCEecCCC-CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEE
Q psy2149 42 VKT-INIKWQKGDKIIKPS-KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL-TANLK 104 (108)
Q Consensus 42 ~~p-~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~-~~~l~ 104 (108)
+.| |.+.|++++..+... .+....... .|.|.++..+|.|.|.|.+.|..|.... .+.|.
T Consensus 23 g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 23 GHPEPTVSWRKDGQPLNLDNERVRIVDDG---NLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred CCCCCEEEEEECCEECCCCCCCEEEccCC---EEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 567 999999998877653 334333333 7999999999999999999999987654 55554
No 69
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.36 E-value=5.5e-11 Score=58.66 Aligned_cols=77 Identities=32% Similarity=0.397 Sum_probs=54.2
Q ss_pred CCCCceEEEEEEECCCcCeEEEEEEEecCCEEEEeeC-CEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 16 YEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKG-DKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 16 ~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
...+.-.+.|.+ .|.|+.+.|+++ +..+....++.+..++....|.|..+..+|.|.|+|.+.|..
T Consensus 13 ~~G~~v~l~C~~-------------~G~P~~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~ 79 (92)
T cd05866 13 SVGESKFFTCTA-------------IGEPESIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAK 79 (92)
T ss_pred cCCCeEEEEEEE-------------EEeCCeEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCC
Confidence 345555666655 344556789974 555555556666555556689999999999999999999999
Q ss_pred cceE-EEEEEEE
Q psy2149 95 GQVV-LTANLKV 105 (108)
Q Consensus 95 ~~~~-~~~~l~v 105 (108)
|... ..+.|.+
T Consensus 80 G~~~~~~i~l~~ 91 (92)
T cd05866 80 GQTQEATVVLEI 91 (92)
T ss_pred CcEEEEEEEEEE
Confidence 8764 3555543
No 70
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.35 E-value=2.2e-11 Score=58.50 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=44.2
Q ss_pred EEecC-CEEEEeeCCEecC--------CCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceE-EEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIK--------PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV-LTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~-~~~~l~v 105 (108)
+.|.| |.+.|++++.... ...++....+. .|.|.++..+|.|.|.|.+.|..|... ..+.|.|
T Consensus 7 ~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 7 AEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG---SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CeEeCCCEEEEEECCCccccccccccccCCCEEEecCC---eEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 46889 9999998643211 12233333333 799999999999999999999998774 3555543
No 71
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.35 E-value=1.6e-10 Score=56.95 Aligned_cols=75 Identities=21% Similarity=0.371 Sum_probs=55.8
Q ss_pred CCCCCceEEEEEEECCCcCeEEEEEEEecCCEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 15 TYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 15 v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
+...+.....|.+... +|.+.|++++..+... +..+..... .|.|.++..+|.|.|.|.+.|..
T Consensus 15 v~~g~~v~l~C~a~g~-------------~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~ 78 (91)
T cd05740 15 PEDNQPVTLTCEAEGQ-------------ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEV 78 (91)
T ss_pred cccCCcEEEEEEeCCC-------------CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEEEcCC
Confidence 4456777888887532 2788899998876543 344433322 79999999999999999999999
Q ss_pred cceEE-EEEEEE
Q psy2149 95 GQVVL-TANLKV 105 (108)
Q Consensus 95 ~~~~~-~~~l~v 105 (108)
|.... .+.|.|
T Consensus 79 G~~~S~~~~L~V 90 (91)
T cd05740 79 SNMTSDPYILNV 90 (91)
T ss_pred CCEEeeeEEEEe
Confidence 97665 667766
No 72
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.34 E-value=5.8e-11 Score=60.38 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=52.0
Q ss_pred EEEecC-CEEEEeeCCEecCCC-CCEEEEE--e--CCEEEEEEccCC-CCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 39 RLTVKT-INIKWQKGDKIIKPS-KYFQMSK--E--GDSYVLRISEAF-PEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 39 ~~~~~p-~~~~w~~~~~~~~~~-~~~~~~~--~--~~~~~l~i~~~~-~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
.+.|.| +.+.|++++..+... .++.... . .....|.|.++. .+|.|.|.|.+.|..|.....+.|.|.+
T Consensus 31 ~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~ 106 (109)
T cd05773 31 QAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTS 106 (109)
T ss_pred ECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecC
Confidence 356788 999999999877533 3332221 1 113478999987 5899999999999999999999998864
No 73
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.32 E-value=4e-11 Score=57.33 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=40.1
Q ss_pred EEecC-CEEEEeeCCEecCCC--CCEEEEEeCCEEEEEEccCCC----CCCeEEEEEEEcCCcceEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS--KYFQMSKEGDSYVLRISEAFP----EDEGQYKCIATNQGGQVVL 99 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~----~d~g~y~c~~~n~~~~~~~ 99 (108)
+.|.| |.+.|++++..+... ....+..... .|.|..+.. .|.|.|.|.+.|..|...+
T Consensus 7 a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 7 AKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CcccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 46889 999999998876432 2333332222 566665543 3789999999999997665
No 74
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.32 E-value=7.7e-11 Score=58.30 Aligned_cols=60 Identities=30% Similarity=0.423 Sum_probs=44.9
Q ss_pred EEecC-CEEEEeeCCEecCCC-CCEEEEEeCCEEEEEEccCC-CCCCeEEEEEEEcCCcceEE-EEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS-KYFQMSKEGDSYVLRISEAF-PEDEGQYKCIATNQGGQVVL-TANL 103 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~~~n~~~~~~~-~~~l 103 (108)
+.|.| |.+.|++++..+... .++.+ .+. .|.|.++. .+|.|.|.|.+.|..|...+ .+.|
T Consensus 28 a~G~P~P~i~W~k~~~~i~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 28 ARANPFPIYKWRKNNLDIDLTNDRYSM-VGG---NLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CccCCCCEEEEEECCEEccCCCCeEEE-ECC---EEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 66889 999999998877533 33322 233 78888875 58999999999999998765 4444
No 75
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.32 E-value=2.5e-11 Score=58.46 Aligned_cols=65 Identities=29% Similarity=0.434 Sum_probs=45.3
Q ss_pred EEecC-CEEEEeeCCE---e--cCCCCC-EEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDK---I--IKPSKY-FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~---~--~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.+.| |.+.|+++.. . ..+... ..+.. .....|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 10 ~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 10 VTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred ccccCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 45778 9999998632 1 111110 00111 11237999999999999999999999999998888875
No 76
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.32 E-value=7.1e-11 Score=56.47 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=41.0
Q ss_pred EEecC-CEEEEeeCCEecCC--CCCEEEEEeCCEEEEEEccCC----CCCCeEEEEEEEcCCcceEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKP--SKYFQMSKEGDSYVLRISEAF----PEDEGQYKCIATNQGGQVVLT 100 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~c~~~n~~~~~~~~ 100 (108)
+.|.| |.+.|++++..+.. ..+..+.... ..|.|..+. ..|.|.|.|.+.|..|...+.
T Consensus 7 ~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~--~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 7 AKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRS--GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred ccccCCCEEEEEECCEEccCcCCCcEEEeCCC--ceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 56889 99999999986532 2333332222 267777653 236899999999999977663
No 77
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.31 E-value=1.2e-10 Score=57.75 Aligned_cols=57 Identities=26% Similarity=0.476 Sum_probs=42.6
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEE-EeCCEEEEEEccCC-CCCCeEEEEEEEcCCcceEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMS-KEGDSYVLRISEAF-PEDEGQYKCIATNQGGQVVL 99 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~-~~d~g~y~c~~~n~~~~~~~ 99 (108)
+.|.| |.+.|++++..+......... .++ .|.|.++. ..|.|.|.|.+.|..|...+
T Consensus 28 ~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g---~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 28 ARGNPVPTYRWLRNGTEIDTESDYRYSLIDG---NLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred eeecCCCEEEEEECCeECccCCCceEEeeCC---eEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 56889 999999999887544332222 223 67887774 68999999999999997754
No 78
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.28 E-value=2.7e-10 Score=56.45 Aligned_cols=60 Identities=30% Similarity=0.519 Sum_probs=43.6
Q ss_pred EEecC-CEEEEeeCCEecCCCC--CEEEEEeCCEEEEEEccCC-CCCCeEEEEEEEcCCcceEE-EEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSK--YFQMSKEGDSYVLRISEAF-PEDEGQYKCIATNQGGQVVL-TANL 103 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~-~~d~g~y~c~~~n~~~~~~~-~~~l 103 (108)
+.|.| |.+.|++++..+.... ++.+ ... .|.|.++. ..|.|.|.|.+.|..|...+ .+.|
T Consensus 28 a~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 28 ARASPPATYRWKMNGTEIKFAPESRYTL-VAG---NLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred ceeCCCCEEEEEECCEECccCCCceEEE-ECC---eEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 45778 9999999998875332 2222 223 67887755 58999999999999997765 4444
No 79
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.27 E-value=1.4e-10 Score=55.25 Aligned_cols=61 Identities=33% Similarity=0.497 Sum_probs=45.2
Q ss_pred ecC-CEEEEeeCCEecCCC----CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEE
Q psy2149 42 VKT-INIKWQKGDKIIKPS----KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102 (108)
Q Consensus 42 ~~p-~~~~w~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~ 102 (108)
+.| +.+.|++++..+... .++..........|.|.++...|+|.|.|.+.|..|....++.
T Consensus 10 ~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 10 EYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 357 899999998776532 1122322234457999999999999999999999998777654
No 80
>KOG4222|consensus
Probab=99.23 E-value=3.3e-11 Score=79.51 Aligned_cols=87 Identities=30% Similarity=0.417 Sum_probs=67.0
Q ss_pred CCceEEEEEEECCCcCeEEE-EE-------------------------------EEecC-CEEEEeeCCEecCCC--CCE
Q psy2149 18 EDSGLFTLRAVNSAGQVEST-AR-------------------------------LTVKT-INIKWQKGDKIIKPS--KYF 62 (108)
Q Consensus 18 ~d~G~Y~C~~~~~~~~~~~~-~~-------------------------------~~~~p-~~~~w~~~~~~~~~~--~~~ 62 (108)
.|.|.|+|.+.|..+..-+. .. ..+.| +.+.|.+++..+... ...
T Consensus 102 ~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~ 181 (1281)
T KOG4222|consen 102 HDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPII 181 (1281)
T ss_pred CCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeE
Confidence 39999999999987653221 11 55677 999999999888733 444
Q ss_pred EEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEEEEe
Q psy2149 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL-TANLKVLD 107 (108)
Q Consensus 63 ~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~-~~~l~v~~ 107 (108)
.+..++ .|.|.++++.|.|.|.|.+.|..|..++ .+.|+|.+
T Consensus 182 ~lisgG---~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e 224 (1281)
T KOG4222|consen 182 ALISGG---NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE 224 (1281)
T ss_pred EEecCC---cEEEeccccCCCceeeeeecccccccccccceeeecc
Confidence 455555 7999999999999999999999987766 66777764
No 81
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.23 E-value=2.7e-10 Score=55.34 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=44.9
Q ss_pred EecC-CEEEEeeCCEecCCCC----CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCc--ceEEEEEEEEEe
Q psy2149 41 TVKT-INIKWQKGDKIIKPSK----YFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG--QVVLTANLKVLD 107 (108)
Q Consensus 41 ~~~p-~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~--~~~~~~~l~v~~ 107 (108)
.+.| +.+.|..++....... ...+........|.|.+++.+|+|.|.|.+.|..+ ....++.|+|.+
T Consensus 11 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~~ 84 (84)
T cd05861 11 QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVHE 84 (84)
T ss_pred ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEeC
Confidence 3456 8899987665322111 11111122345899999999999999999998776 566677887753
No 82
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.23 E-value=1.3e-09 Score=54.26 Aligned_cols=66 Identities=27% Similarity=0.431 Sum_probs=42.9
Q ss_pred EEecC-CEEEEeeCCEecCCC-----CCEEEEEeCCEEEEEEc--cCCCCCCeEEEEEEEcCCcc-eEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS-----KYFQMSKEGDSYVLRIS--EAFPEDEGQYKCIATNQGGQ-VVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~--~~~~~d~g~y~c~~~n~~~~-~~~~~~l~v 105 (108)
+.|.| |.+.|++++..+... .......++....+.+. .+..+|.|.|+|.+.|..|. ....+.|.|
T Consensus 25 ~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 25 AEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 45678 999999999877541 11122222322233332 23688999999999999998 445666665
No 83
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.22 E-value=1.2e-10 Score=57.69 Aligned_cols=61 Identities=25% Similarity=0.378 Sum_probs=45.4
Q ss_pred cC-CEEEEeeCCEecCCC--CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 43 KT-INIKWQKGDKIIKPS--KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 43 ~p-~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
.| +.+.|++++..+... ...++...+ ..|.|..+..+|+|.|.|.+.|..|..+..+.|.|
T Consensus 31 ~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 31 SPGLNLTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred CCCceEEEEEcCCCCcccccccceeeecC--CeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 57 899999988653221 112222222 27999999999999999999999999888888765
No 84
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.22 E-value=1.3e-09 Score=53.85 Aligned_cols=77 Identities=26% Similarity=0.395 Sum_probs=51.4
Q ss_pred CCCCCceEEEEEEECCCcCeEEEEEEEecCCEEEEee-CCEecCCCCCEEEEE-eCCEEEEEEccCCCCCCeEEEEEEEc
Q psy2149 15 TYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQK-GDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 15 v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p~~~~w~~-~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~~~n 92 (108)
+...+.-.+.|.+. |.|+.+.|++ ++..+....+..... ......|.|.++..+|.|.|+|.+.|
T Consensus 12 v~~G~~~~l~C~~~-------------G~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 12 ISVGESKFFLCQVI-------------GEPKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred ECCCCeEEEEEEeE-------------eeCCeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEc
Confidence 34566667777663 3346788987 444444433333332 23456899999999999999999999
Q ss_pred CCc-ceEEEEEEE
Q psy2149 93 QGG-QVVLTANLK 104 (108)
Q Consensus 93 ~~~-~~~~~~~l~ 104 (108)
..| ....++.|.
T Consensus 79 ~~g~~~~~sv~l~ 91 (92)
T cd04977 79 AKGTESEATVNLK 91 (92)
T ss_pred CCCCcceeEEEEE
Confidence 864 455566664
No 85
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.22 E-value=2.2e-10 Score=55.63 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=44.3
Q ss_pred C-CEEEEeeCCEecCCCCC----EE-EEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 44 T-INIKWQKGDKIIKPSKY----FQ-MSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 44 p-~~~~w~~~~~~~~~~~~----~~-~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
| +.+.|..++..+..... .. .........|.|.+++..|+|.|+|.+.|..+....+..|.|
T Consensus 16 ~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 16 EGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred ccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 6 88999877654422110 00 011123347999999999999999999999999988888765
No 86
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.21 E-value=3.2e-10 Score=56.27 Aligned_cols=63 Identities=32% Similarity=0.458 Sum_probs=43.2
Q ss_pred EEecC-CEEEEeeCCEecCCCCC--EEEEEeCCEEEEEEccC-----CCCCCeEEEEEEEcC-CcceEE-EEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKY--FQMSKEGDSYVLRISEA-----FPEDEGQYKCIATNQ-GGQVVL-TANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~g~y~c~~~n~-~~~~~~-~~~l~v 105 (108)
+.+.| |.+.|.+++..+..... .....++ .+.+..+ ...|.|.|.|.+.|. .|...+ .+.|.|
T Consensus 23 v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 23 AEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred cccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 45678 99999999987754332 3333333 3445444 578999999999999 887743 666654
No 87
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.21 E-value=6.2e-10 Score=54.94 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=43.2
Q ss_pred cC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy2149 43 KT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103 (108)
Q Consensus 43 ~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l 103 (108)
.| |.+.|++++..+...... ...+. .|.|.++..+|.|.|+|.+.|..+.....+..
T Consensus 27 ~~~p~i~Wyk~~~~i~~~~~~-~~~~~---~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~ 84 (92)
T cd05757 27 NTLPPVQWYKDCKLLEGDRKR-FVKGS---KLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR 84 (92)
T ss_pred CCCCcEEEeECCEECCCCccE-EecCC---EEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence 36 899999999887654332 22233 89999999999999999999987766654433
No 88
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.20 E-value=1.6e-09 Score=57.39 Aligned_cols=86 Identities=14% Similarity=0.258 Sum_probs=52.2
Q ss_pred EEEEcCCCCCCceEEEEEEECCCcCeEEEEE-----------------------------EEe-cC--CEEEEeeCCEec
Q psy2149 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTAR-----------------------------LTV-KT--INIKWQKGDKII 56 (108)
Q Consensus 9 ~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~-----------------------------~~~-~p--~~~~w~~~~~~~ 56 (108)
+|+|.+++.+|+|.|.|.+.+..+....... +.+ .| ..+.|++++...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 7999999999999999999887655444333 333 35 479999987432
Q ss_pred CC----CCCEE-----EEEeCCE---EEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 57 KP----SKYFQ-----MSKEGDS---YVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 57 ~~----~~~~~-----~~~~~~~---~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
.. ..... ...++.. +.|.+......+...|+|.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 11 01111 1111211 234444333344679999998754
No 89
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.17 E-value=5.8e-09 Score=50.46 Aligned_cols=65 Identities=26% Similarity=0.438 Sum_probs=47.6
Q ss_pred EecC-CEEEEeeCCEecCCCCCEEEEE-eCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 41 TVKT-INIKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 41 ~~~p-~~~~w~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
.+.| +.+.|++++..+.......... ......|.|.++..+|.|.|.|.+.|..|....++.|.|
T Consensus 19 ~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 19 SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 3457 8899999987765433222211 223347889999999999999999999998888777754
No 90
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.17 E-value=1.3e-09 Score=54.36 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=47.8
Q ss_pred EEecC-C-EEEEeeCCEecCCC--CCEEEEEe----CCEEEEEEccCCCCC-CeEEEEEEEcCCcceEEEEEE
Q psy2149 40 LTVKT-I-NIKWQKGDKIIKPS--KYFQMSKE----GDSYVLRISEAFPED-EGQYKCIATNQGGQVVLTANL 103 (108)
Q Consensus 40 ~~~~p-~-~~~w~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y~c~~~n~~~~~~~~~~l 103 (108)
+.|.| | .+.|.+++..+... .++.+... .....|.|.++..+| .|.|.|.+.|..|.....+.|
T Consensus 25 ~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 25 IFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 45778 8 69999999877543 34444332 223479999999855 899999999999998887765
No 91
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.12 E-value=2.4e-09 Score=52.75 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=40.6
Q ss_pred EEecC-CEEEEeeCCEecCCC--CCEEEEEeCCEEEEEEccCCC-CCCeEEEEEEEcCCcceEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPS--KYFQMSKEGDSYVLRISEAFP-EDEGQYKCIATNQGGQVVL 99 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~-~d~g~y~c~~~n~~~~~~~ 99 (108)
+.+.| |.+.|++++..+... ..+.. .+. .|.|.++.. +|.|.|.|.+.|..|....
T Consensus 28 ~~g~p~p~i~W~k~~~~l~~~~~~~~~~-~~~---~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 28 ARGSPPPTYRWLMNGTEIDDEPDSRYSL-VGG---NLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred eeEcCCCEEEEEECCEECCCCCCCCEEE-ECC---EEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 44678 999999999877432 22322 222 678877764 8999999999999987654
No 92
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.03 E-value=1e-08 Score=49.41 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=39.5
Q ss_pred EEecC-C-EEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEE-EEEE
Q psy2149 40 LTVKT-I-NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL-TANL 103 (108)
Q Consensus 40 ~~~~p-~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~-~~~l 103 (108)
+.|.| | .+.|.+++..+... . ......|.|..+ .|.|.|.|.+.|..|...+ .+.|
T Consensus 22 a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 22 AVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred eeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 56889 9 79999999877531 1 111126777766 4689999999999997665 4443
No 93
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.01 E-value=8.4e-09 Score=50.13 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCCCceEEEEEEECCCcCeEEEEEEEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 16 YEEDSGLFTLRAVNSAGQVESTARLTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 16 ~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
...+.....|.+.. +.| +.+.|++++..+.... ...+. .|.|.++..+|+|.|.|.+.|..
T Consensus 14 ~~G~~v~L~C~~~~------------~~~~~~i~W~~~~~~~~~~~---~~~~~---~L~I~~v~~~DsG~Y~C~a~n~~ 75 (85)
T cd05754 14 RPGADVSFICRAKS------------KSPAYTLVWTRVGGGLPSRA---MDFNG---ILTIRNVQLSDAGTYVCTGSNML 75 (85)
T ss_pred cCCCCEEEEEEcCC------------CCCCcEEEEEECCCcCCCcc---cccCC---EEEECCCCHHHCEEEEEEEeccC
Confidence 45666677776632 236 8899999875543211 11122 79999999999999999999999
Q ss_pred cceEEEEEE
Q psy2149 95 GQVVLTANL 103 (108)
Q Consensus 95 ~~~~~~~~l 103 (108)
|.....+.|
T Consensus 76 g~~~~~~~l 84 (85)
T cd05754 76 DTDEATATL 84 (85)
T ss_pred CeEeEEEEE
Confidence 988887765
No 94
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.01 E-value=2.4e-08 Score=48.74 Aligned_cols=46 Identities=22% Similarity=0.528 Sum_probs=36.4
Q ss_pred CEEEEeeCCEecCCC-CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 45 INIKWQKGDKIIKPS-KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
+.+.|.+++..+... .++.+ .+. .|.|.+++..|.|.|+|.+.+..
T Consensus 25 ~~i~W~~ng~~i~~~~~r~~~-~~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 25 ARVVWKFDGKVLTPESAKYLL-YRD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CeEEEEECCEECCCCCceEEE-ECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 789999999888655 33433 233 68999999999999999998764
No 95
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.97 E-value=2.3e-09 Score=50.96 Aligned_cols=33 Identities=30% Similarity=0.522 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
+..+|.|.++..+|+|.|+|.|.|..|......
T Consensus 39 g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05892 39 GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHA 71 (75)
T ss_pred CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEE
Confidence 445899999999999999999999999887654
No 96
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.95 E-value=1.5e-08 Score=49.63 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=42.8
Q ss_pred C-CEEEEeeCCEecCCCC--CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCc-ceEEEEEEEEEe
Q psy2149 44 T-INIKWQKGDKIIKPSK--YFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG-QVVLTANLKVLD 107 (108)
Q Consensus 44 p-~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~-~~~~~~~l~v~~ 107 (108)
| +.+.|++++..+.... ..+...... .|.|.++..+|.|.|.|.+.+..+ ....++.|.|.+
T Consensus 23 p~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 23 NLASVVWLFQGGPLQRKEEPEERLLVTED--GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE 88 (89)
T ss_pred CCceEEEEECCcccccccCcCceEEEcCC--CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence 5 7899999987654432 112222222 588999999999999999987654 444477888765
No 97
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.94 E-value=8.9e-08 Score=47.74 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=53.6
Q ss_pred CCCCCceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCC--CCEEEEEe----CCEEEEEEccCCCCC-CeE
Q psy2149 15 TYEEDSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPS--KYFQMSKE----GDSYVLRISEAFPED-EGQ 85 (108)
Q Consensus 15 v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~ 85 (108)
+...|.+...|.+ .+.| ..+.|.+.+..+... .++.+... +-.+.|.|.++...| .|.
T Consensus 13 ~~~G~~~~L~C~~-------------~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 13 AVRGERGKVKCFI-------------GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred EeCCCcEEEEEEE-------------ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 3456666777766 2445 567888776655433 45555433 355689999998777 699
Q ss_pred EEEEEEcCCcceEEEEEE
Q psy2149 86 YKCIATNQGGQVVLTANL 103 (108)
Q Consensus 86 y~c~~~n~~~~~~~~~~l 103 (108)
|.|.+.|..|.....+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999999887765
No 98
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.93 E-value=1.4e-07 Score=46.89 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=41.1
Q ss_pred EecC-CEEEEeeCCE--------ecCCCCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 41 TVKT-INIKWQKGDK--------IIKPSKYFQMSKE-GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 41 ~~~p-~~~~w~~~~~--------~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
.+.| +.+.|++.+. ......++..... .....|.|.+++.+|+|.|.|.+.+. ......+.|.|
T Consensus 22 ~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~-~~~~~~~~l~v 95 (95)
T cd07701 22 DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM-PVKTSKAYLTV 95 (95)
T ss_pred ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee-cCccEEEEEEC
Confidence 3456 7888975321 1112344444322 34458999999999999999999874 34455666654
No 99
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.91 E-value=9.9e-09 Score=48.58 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
+....|.|.++..+|+|.|+|.|.|..|......
T Consensus 37 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05748 37 ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI 70 (74)
T ss_pred CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEE
Confidence 4567899999999999999999999999876654
No 100
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.90 E-value=3.7e-09 Score=49.14 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=27.8
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
....|.|.++..+|+|.|+|.|.|..|.....
T Consensus 29 ~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~ 60 (67)
T cd05863 29 SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKR 60 (67)
T ss_pred CcCEEEECCCCHHHCEEEEEEEEECCccEEEE
Confidence 45689999999999999999999998866544
No 101
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.90 E-value=9e-09 Score=49.65 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=29.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
..+.|+|.+++.+|+|.|+|.|.|..|......
T Consensus 44 ~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 76 (81)
T cd04971 44 YHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI 76 (81)
T ss_pred cEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence 356899999999999999999999999877654
No 102
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.88 E-value=3.4e-07 Score=45.46 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=40.6
Q ss_pred EEecC-CEEEEeeCCEec--------CCCCCEEEEEe-CCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKII--------KPSKYFQMSKE-GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~--------~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~ 104 (108)
+.+.| +.+.|.+++..+ ....++.+... .....|.|.++..+|.|.|+|.+.. ....++.+.|.
T Consensus 21 v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~~~~~~~~~~~ 94 (95)
T cd05882 21 VKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-MPVRTAKATVT 94 (95)
T ss_pred EeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-eccccEEEEEE
Confidence 34567 889998776421 01123332222 2345899999999999999999987 33444455554
No 103
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.88 E-value=2e-08 Score=48.97 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=34.3
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
..+.|.|.+++..|.|.|+|.+.|..+....+..|.|.+
T Consensus 48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~~ 86 (86)
T cd05862 48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVHE 86 (86)
T ss_pred eeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEeC
Confidence 345899999999999999999999999888888888864
No 104
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.88 E-value=9.6e-09 Score=49.25 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
.+.|.|.++..+|+|.|+|.|.|..|+.....
T Consensus 43 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~ 74 (79)
T cd05855 43 HGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNV 74 (79)
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCcccceEE
Confidence 56899999999999999999999999876553
No 105
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.87 E-value=9.7e-09 Score=49.97 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=29.8
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR 39 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 39 (108)
....|+|.+++.+|+|.|+|.|.|..|.......
T Consensus 45 ~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 45 TIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred eEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 3568999999999999999999999988776654
No 106
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.87 E-value=7.2e-09 Score=51.14 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=27.3
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcCeE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVE 35 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~ 35 (108)
+....|+|.++..+|+|.|+|.|.|..|...
T Consensus 53 g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 53 GVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred CCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 3456899999999999999999999988754
No 107
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.87 E-value=1.4e-08 Score=48.22 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=29.0
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
+...|.|.+++.+|+|.|+|.|.|..|......
T Consensus 39 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (75)
T cd05744 39 GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNA 71 (75)
T ss_pred CeEEEEECCCCcccCEEEEEEEEcCCCcEEEEE
Confidence 445799999999999999999999999877654
No 108
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.87 E-value=1.4e-08 Score=48.31 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=29.0
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 42 ~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 42 KSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred cEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 457899999999999999999999998876653
No 109
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.86 E-value=1.1e-08 Score=51.03 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=28.9
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
+...|+|.+++.+|+|.|+|.|.|..|......
T Consensus 62 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 94 (98)
T cd05870 62 GESSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 94 (98)
T ss_pred CeeEEEEeeCCcCCCEEEEEEEeccCCcceeEE
Confidence 457899999999999999999999998776553
No 110
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.86 E-value=9.4e-09 Score=48.87 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|.|.++..+|+|.|+|.|.|..|......
T Consensus 40 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05893 40 YICLLIQGATKEDAGWYTVSAKNEAGIVSCTA 71 (75)
T ss_pred EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence 34799999999999999999999999887654
No 111
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.86 E-value=6.5e-09 Score=49.16 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
+++|.|.+++.+|+|.|+|.|.|..|......
T Consensus 38 ~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 69 (73)
T cd05852 38 DGSLEILNITKLDEGSYTCFAENNRGKANSTG 69 (73)
T ss_pred CCEEEECcCChhHCEEEEEEEECCCCceeEEE
Confidence 35799999999999999999999998877654
No 112
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.84 E-value=1.9e-08 Score=47.64 Aligned_cols=33 Identities=30% Similarity=0.293 Sum_probs=29.0
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|+|.+++.+|.|.|+|.|.|..|......
T Consensus 41 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 41 KNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred ceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 467899999999999999999999998876553
No 113
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.83 E-value=2.6e-08 Score=48.57 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=29.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|.|.++..+|+|.|+|.|.|..|......
T Consensus 50 ~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 50 DLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred CeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 467899999999999999999999999876553
No 114
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.81 E-value=9.5e-09 Score=49.17 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=29.2
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
.++...|+|.++..+|+|.|+|.|.|..|.....
T Consensus 38 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 38 EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 3456899999999999999999999998876543
No 115
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.81 E-value=1.1e-07 Score=47.09 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=39.1
Q ss_pred cC-CEEEEeeCCEecCCCCC-EEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2149 43 KT-INIKWQKGDKIIKPSKY-FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98 (108)
Q Consensus 43 ~p-~~~~w~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~ 98 (108)
.+ +.+.|++++.++..... +....+ ...|.|.++..+|.|.|+|.+.+..+...
T Consensus 27 ~~~~~v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 27 RTDVELQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred CCCCcEEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 35 89999999988754332 222112 12699999999999999999999865443
No 116
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.81 E-value=5.3e-07 Score=43.05 Aligned_cols=76 Identities=34% Similarity=0.549 Sum_probs=54.4
Q ss_pred CCCceEEEEEEECCCcCeEEEEEEEecC-CEEEEeeC-CEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 17 EEDSGLFTLRAVNSAGQVESTARLTVKT-INIKWQKG-DKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 17 ~~d~G~Y~C~~~~~~~~~~~~~~~~~~p-~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
..+.-...|.+... + +.+.|+++ +..+................|.|.++...|.|.|.|.+.+..
T Consensus 8 ~g~~~~l~C~~~~~-------------~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00410 8 EGESVTLSCEVSGS-------------PPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred CCCeEEEEEEEccC-------------CCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCC
Confidence 34555666766432 5 78889987 666654445555444435589999999999999999999888
Q ss_pred cceEEEEEEEE
Q psy2149 95 GQVVLTANLKV 105 (108)
Q Consensus 95 ~~~~~~~~l~v 105 (108)
+.....+.|.|
T Consensus 75 ~~~~~~~~l~V 85 (86)
T smart00410 75 GSASSTTTLTV 85 (86)
T ss_pred CeEEEEEEEEE
Confidence 77777766665
No 117
>smart00409 IG Immunoglobulin.
Probab=98.81 E-value=5.3e-07 Score=43.05 Aligned_cols=76 Identities=34% Similarity=0.549 Sum_probs=54.4
Q ss_pred CCCceEEEEEEECCCcCeEEEEEEEecC-CEEEEeeC-CEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 17 EEDSGLFTLRAVNSAGQVESTARLTVKT-INIKWQKG-DKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 17 ~~d~G~Y~C~~~~~~~~~~~~~~~~~~p-~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
..+.-...|.+... + +.+.|+++ +..+................|.|.++...|.|.|.|.+.+..
T Consensus 8 ~g~~~~l~C~~~~~-------------~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~ 74 (86)
T smart00409 8 EGESVTLSCEVSGS-------------PPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSS 74 (86)
T ss_pred CCCeEEEEEEEccC-------------CCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCC
Confidence 34555666766432 5 78889987 666654445555444435589999999999999999999888
Q ss_pred cceEEEEEEEE
Q psy2149 95 GQVVLTANLKV 105 (108)
Q Consensus 95 ~~~~~~~~l~v 105 (108)
+.....+.|.|
T Consensus 75 ~~~~~~~~l~V 85 (86)
T smart00409 75 GSASSTTTLTV 85 (86)
T ss_pred CeEEEEEEEEE
Confidence 77777766665
No 118
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.80 E-value=2.4e-08 Score=49.87 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=31.3
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR 39 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 39 (108)
......|+|.++..+|+|.|+|.+.|..|.......
T Consensus 52 ~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 52 TENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred cCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 345788999999999999999999999998776654
No 119
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.80 E-value=2.6e-08 Score=49.63 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|.|.+++.+|+|.|+|.|.|..|......
T Consensus 62 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 93 (97)
T cd05869 62 VSSLTLKYIQYTDAGEYLCTASNTIGQDSQSM 93 (97)
T ss_pred EEEEEEecCccCcCEEEEEEEecCCCCeeEEE
Confidence 46899999999999999999999999876654
No 120
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.80 E-value=8.3e-09 Score=50.72 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
...|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 84 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHS 84 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcccCC
Confidence 3579999999999999999999999876554
No 121
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.80 E-value=2.6e-08 Score=49.39 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=29.0
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|+|.+++.+|+|.|.|.|.|..|......
T Consensus 60 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 92 (96)
T cd05732 60 RVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSM 92 (96)
T ss_pred cEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEE
Confidence 457899999999999999999999999876554
No 122
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.79 E-value=2.5e-08 Score=49.60 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCC-cCeEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSA-GQVEST 37 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~-~~~~~~ 37 (108)
...|+|.+++.+|+|.|+|.|.|.. |.....
T Consensus 59 ~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 59 SSTLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred ceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 4689999999999999999999996 666554
No 123
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.79 E-value=1.3e-07 Score=46.57 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=40.8
Q ss_pred ecC-CEEEEeeCCE--ecC----CCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEc-CCcceEEEEEEEEEe
Q psy2149 42 VKT-INIKWQKGDK--IIK----PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN-QGGQVVLTANLKVLD 107 (108)
Q Consensus 42 ~~p-~~~~w~~~~~--~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n-~~~~~~~~~~l~v~~ 107 (108)
..| +.+.|++... ... ...+... ... .|.|.++..+|+|.|.|.+.+ ..+.....+.|.|.+
T Consensus 21 ~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~---~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~ 90 (91)
T cd05871 21 KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TER---GLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE 90 (91)
T ss_pred CCCCceEEEEEECCCCCccccccccccEEE-ecC---eEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence 356 8999997432 111 1122222 112 599999999999999999985 555555577888764
No 124
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.78 E-value=8.7e-08 Score=43.29 Aligned_cols=50 Identities=32% Similarity=0.518 Sum_probs=36.1
Q ss_pred ecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2149 42 VKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95 (108)
Q Consensus 42 ~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~ 95 (108)
+.| +.+.|++++..+. . ...... ....|.|.++...|.|.|.|.+.|..|
T Consensus 13 ~~~~~~v~W~~~~~~~~-~-~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 13 GDPVPNITWLKDGKPLP-E-SNRLSA--SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred cCCCCeEEEEECCEECC-C-CCEEec--CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 456 8899999887765 2 211221 222799999999999999999988754
No 125
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.77 E-value=2.4e-08 Score=46.90 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=28.7
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|.|.++..+|+|.|+|.|.|..|......
T Consensus 34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 66 (71)
T cd05876 34 NNKTLQLDNVLESDDGEYVCTAENSEGSARHHY 66 (71)
T ss_pred CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEE
Confidence 356899999999999999999999999876553
No 126
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.77 E-value=2.6e-08 Score=47.25 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=27.6
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|.|.+++.+|+|.|.|.|.|..|......
T Consensus 39 ~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~ 70 (75)
T cd05763 39 DDVFFIVDVKIEDTGVYSCTAQNTAGSISANA 70 (75)
T ss_pred CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeE
Confidence 34799999999999999999999998766543
No 127
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.77 E-value=9e-09 Score=50.02 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR 39 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 39 (108)
...|.|.+++.+|+|.|+|.|.|..+....+..
T Consensus 46 ~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 46 AGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 458999999999999999999999988766544
No 128
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.76 E-value=3.9e-08 Score=48.14 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCeEEEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR 39 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 39 (108)
..|.|.++..+|+|.|+|.|.|..|.......
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 67999999999999999999999998776544
No 129
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.76 E-value=3.2e-08 Score=46.21 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|.|.++..+|+|.|+|.|.|..|......
T Consensus 35 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 66 (69)
T cd05746 35 EGYLAIRDVGVADQGRYECVARNTIGYASVSM 66 (69)
T ss_pred CCEEEECcCChhhCEEEEEEEECCCCcEEEEE
Confidence 35799999999999999999999999876654
No 130
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.76 E-value=2.8e-08 Score=46.70 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=27.5
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
....|.|.++..+|+|.|+|.|.|..|.....
T Consensus 33 ~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~ 64 (71)
T cd04976 33 SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKR 64 (71)
T ss_pred CCCEEEECcCCHHHCEEEEEEEEcCCccEEEE
Confidence 34689999999999999999999998876544
No 131
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.76 E-value=2.2e-08 Score=49.34 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=27.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~ 36 (108)
....|+|.+++.+|+|.|.|.|.|..|...+
T Consensus 53 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 53 DNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred CCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 3458999999999999999999999987654
No 132
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.75 E-value=2e-08 Score=48.81 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=29.0
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR 39 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 39 (108)
....|.|.+++.+|+|.|+|.|.|..|.......
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 3568999999999999999999999887765543
No 133
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.75 E-value=3.1e-08 Score=46.21 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|+|.+++.+|+|.|+|.+.|..|......
T Consensus 34 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 65 (69)
T cd05725 34 DKSLKIRNVTAGDEGSYTCEAENMVGKIEASA 65 (69)
T ss_pred CCEEEECcCChhHCEEEEEEEEcCCCcEEEEE
Confidence 34799999999999999999999998876553
No 134
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.75 E-value=1.6e-08 Score=49.68 Aligned_cols=31 Identities=35% Similarity=0.325 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
..|+|.+++.+|+|.|+|.|.|..|.....+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a 85 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSA 85 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceE
Confidence 5799999999999999999999998766543
No 135
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.75 E-value=2.2e-08 Score=46.89 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=28.3
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|.|.+++.+|+|.|+|.|.|..|......
T Consensus 34 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 66 (71)
T cd05731 34 FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTI 66 (71)
T ss_pred CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEE
Confidence 345899999999999999999999998766543
No 136
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.75 E-value=1.8e-06 Score=43.15 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=52.8
Q ss_pred eEEEEEEEecC-CE-EEEeeCCEecCCCCCEEEEEe---C--CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 34 VESTARLTVKT-IN-IKWQKGDKIIKPSKYFQMSKE---G--DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 34 ~~~~~~~~~~p-~~-~~w~~~~~~~~~~~~~~~~~~---~--~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
....+.+.+.| |. +.|.+++..+........... . -.+.|.+..+..++.|.|+|.+.|.....+..+.|.|.
T Consensus 21 ~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 21 LDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 34444488999 87 999988765543322111111 1 22479999999999999999999999999999988775
No 137
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.73 E-value=2.8e-08 Score=47.05 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|+|.+++.+|+|.|+|.|.|..|......
T Consensus 39 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 70 (74)
T cd05745 39 SGTLRISRVALHDQGQYECQAVNIVGSQRTVA 70 (74)
T ss_pred CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence 35899999999999999999999999876654
No 138
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.73 E-value=7.6e-08 Score=46.67 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
.....|.|.++..+|+|.|+|.+.|..|......
T Consensus 48 ~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05857 48 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 81 (85)
T ss_pred CCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence 3456899999999999999999999999876654
No 139
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.73 E-value=8e-08 Score=47.38 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...+.|.|.++..+|+|.|.|.+.|..|......
T Consensus 56 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 89 (92)
T cd05747 56 EYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQF 89 (92)
T ss_pred CCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEE
Confidence 3467999999999999999999999999876543
No 140
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.73 E-value=4.9e-08 Score=47.31 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=28.4
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|+|.+++.+|+|.|.|.|.|..+....+.
T Consensus 47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred EEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 356899999999999999999999988766553
No 141
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.73 E-value=4.7e-08 Score=48.21 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|.|.+++.+|+|.|+|.|.|..|......
T Consensus 56 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 56 KYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred CEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 456899999999999999999999998876553
No 142
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.71 E-value=3.7e-08 Score=47.01 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~ 36 (108)
...|.|.++..+|+|.|.|.|.|..|...+
T Consensus 37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 66 (77)
T cd05760 37 ERTLTLRSAGPDDSGLYYCCAHNAFGSVCS 66 (77)
T ss_pred CCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence 458999999999999999999999887643
No 143
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.70 E-value=5.2e-08 Score=46.23 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|.|.+++.+|+|.|+|.|.|..|......
T Consensus 39 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd04978 39 DGGTLILSNVQPNDTAVYQCNASNVHGYLLANA 71 (76)
T ss_pred cCCEEEECCCChhhCEEEEEEEEccCCeEEEeE
Confidence 356899999999999999999999998876654
No 144
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.70 E-value=4.8e-08 Score=46.09 Aligned_cols=31 Identities=32% Similarity=0.328 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
..|.|.+++.+|+|.|+|.+.|..|......
T Consensus 39 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 69 (73)
T cd04969 39 GSLEILNVTKSDEGKYTCFAENFFGKANSTG 69 (73)
T ss_pred CeEEEccCChhHCEEEEEEEECCCCceEEEE
Confidence 4799999999999999999999999877654
No 145
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.70 E-value=4.3e-08 Score=47.97 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=31.3
Q ss_pred EeCCEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 3 ~~~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
.+++...|.|.++..+|+|.|+|.+.|..|......
T Consensus 51 ~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~ 86 (90)
T PF07679_consen 51 SDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV 86 (90)
T ss_dssp EETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred cccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence 456789999999999999999999999988776554
No 146
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.70 E-value=2.7e-06 Score=42.47 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=52.1
Q ss_pred ceEEEEEEECCCc-CeEEEEEEEecC-CEEEEeeCCEecCC------CCCEEEEEe---CCEEEEEEccCCCCCCeEEEE
Q psy2149 20 SGLFTLRAVNSAG-QVESTARLTVKT-INIKWQKGDKIIKP------SKYFQMSKE---GDSYVLRISEAFPEDEGQYKC 88 (108)
Q Consensus 20 ~G~Y~C~~~~~~~-~~~~~~~~~~~p-~~~~w~~~~~~~~~------~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~c 88 (108)
.-...|....... ....-.+....+ +.+.|+.++..... ..+..+..+ .....|.|.+++.+|+|.|.|
T Consensus 3 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 82 (100)
T cd05713 3 DAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYTC 82 (100)
T ss_pred cEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEEE
Confidence 3456777753321 222222244455 66667665433221 123333221 234589999999999999999
Q ss_pred EEEcCCcceEEEEEEEE
Q psy2149 89 IATNQGGQVVLTANLKV 105 (108)
Q Consensus 89 ~~~n~~~~~~~~~~l~v 105 (108)
.+.+..+..+..+.|.|
T Consensus 83 ~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 83 FFQSDGFYEEATVELKV 99 (100)
T ss_pred EEecCCcEEEEEEEEEE
Confidence 99988777777777776
No 147
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.70 E-value=6.5e-08 Score=46.01 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|.|.+++.+|+|.|.|.|.|..|.....+
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (76)
T cd05867 40 SGALILTDVQPSDTAVYQCEARNRHGNLLANA 71 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence 35799999999999999999999999876654
No 148
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.69 E-value=3.5e-08 Score=46.27 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
..|.|.++..+|+|.|+|.|.|..|.....
T Consensus 34 ~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~ 63 (70)
T cd05864 34 VHLTIYEVTEKDAGNYTVVLTNPITKEEQR 63 (70)
T ss_pred CEEEECcCCHHHCEEEEEEEEECCCceeeE
Confidence 479999999999999999999998866543
No 149
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.69 E-value=8.7e-08 Score=46.00 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|+|.++..+|+|.|.|.+.|..|......
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence 36899999999999999999999998876543
No 150
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.69 E-value=7.2e-08 Score=47.58 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=24.8
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQ 33 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~ 33 (108)
....|+|.+++.+|+|.|+|.|.|..|.
T Consensus 55 ~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 55 VRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred CEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 4568999999999999999999998653
No 151
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.68 E-value=6.5e-08 Score=47.98 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=39.7
Q ss_pred EEecC-CEEEEeeCCEecC--CCCCEEEEE-eCCEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2149 40 LTVKT-INIKWQKGDKIIK--PSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~--~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~ 97 (108)
..+.| +.+.|++++..+. ...+..+.. ++ .|.+.++...|.|.|.|.+.|.....
T Consensus 28 P~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G---~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 28 PPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG---NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CCCCCCCEEEEEECCcccccccCCCeEEeCCCC---cEEEeecCHhhCceeEEEEEecccCC
Confidence 45678 9999999875432 222222333 23 79999999999999999999986544
No 152
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.68 E-value=2.5e-07 Score=44.78 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=47.3
Q ss_pred CCCCCceEEEEEEECCCcCeEEEEEEEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy2149 15 TYEEDSGLFTLRAVNSAGQVESTARLTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93 (108)
Q Consensus 15 v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 93 (108)
+...+.=..+|.+.. +.+ +.+.|++++..+... .....|.|..++.+|+|.|.|.+.+.
T Consensus 11 V~~G~~vtL~C~~~~------------~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 11 VFEGEPLVLRCHGWK------------NKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred ecCCCCEEEEeeCCC------------CCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeC
Confidence 445666677777522 234 678899988665321 11227999999999999999999998
Q ss_pred CcceEE-EEEEE
Q psy2149 94 GGQVVL-TANLK 104 (108)
Q Consensus 94 ~~~~~~-~~~l~ 104 (108)
.+...+ .+.|.
T Consensus 71 ~~~~~s~~~~i~ 82 (83)
T cd05753 71 SYDYSSEPVSIT 82 (83)
T ss_pred CceecCCCEEEE
Confidence 864443 34443
No 153
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.68 E-value=5.2e-07 Score=43.30 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=38.3
Q ss_pred ecC-CEEEEeeCCEecCCCCCEEEEEe---CCEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2149 42 VKT-INIKWQKGDKIIKPSKYFQMSKE---GDSYVLRISEAFPEDEGQYKCIATNQGGQV 97 (108)
Q Consensus 42 ~~p-~~~~w~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~ 97 (108)
+.| +.+.|++++..+....... ..+ .....|.+......|.+.|+|.+.|..+..
T Consensus 11 skP~a~i~W~k~~~~l~~~~~~~-~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 11 SKPAATLRWYRDRKELKGVISQQ-ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred ccCCCeEEEEECCEECCCCcccc-cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 678 9999999999885432110 010 012268887888888999999999987653
No 154
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.67 E-value=1.6e-07 Score=45.00 Aligned_cols=55 Identities=20% Similarity=0.480 Sum_probs=38.7
Q ss_pred CCCCCceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy2149 15 TYEEDSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 15 v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n 92 (108)
+...|.-..+|.+.. .| ..+.|++++..+.. ... .|.|.++ .+|+|.|.|.+.|
T Consensus 12 v~~G~~V~L~C~~~~-------------~p~~~~~~W~kng~~l~~-------~~~---~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 12 IFQGEKVTLTCNGFN-------------SPEQNSTQWYHNGKLLET-------TTN---SYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred eeCCCCEEEEEeCCC-------------CCCCccEEEEECCEEeec-------cCC---eEEEeec-ccCCEEeEEECCC
Confidence 345566677776643 23 46889999877521 112 6888888 9999999999987
Q ss_pred C
Q psy2149 93 Q 93 (108)
Q Consensus 93 ~ 93 (108)
.
T Consensus 68 ~ 68 (78)
T cd05752 68 S 68 (78)
T ss_pred C
Confidence 5
No 155
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.67 E-value=7.8e-08 Score=47.07 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
..|.|.+++.+|+|.|+|.|.|..|......
T Consensus 53 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 83 (88)
T cd05851 53 AVLKIFNIQPEDEGTYECEAENIKGKDKHQA 83 (88)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence 4799999999999999999999999876654
No 156
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.66 E-value=8.4e-08 Score=48.16 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|.|.++..+|+|.|+|.|.|..|......
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~ 95 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDASKSLTF 95 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCccEEEEE
Confidence 46899999999999999999999998766543
No 157
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.66 E-value=9.5e-07 Score=43.77 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=24.6
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQV 97 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~~ 97 (108)
....|.|.++..+|+|+|.|.+.|..+..
T Consensus 63 g~~~L~I~~l~~sDsgtY~C~v~~~~~~~ 91 (94)
T cd07690 63 GSFPLIIKNLKIEDSDTYICEVEDKKEEV 91 (94)
T ss_pred CeEEEEECCCCHHHCEEEEEEECCccceE
Confidence 34579999999999999999999876543
No 158
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.66 E-value=1.4e-07 Score=45.25 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=28.7
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|.|.++..+|+|.|+|.+.|..|......
T Consensus 46 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 78 (82)
T cd05856 46 KKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY 78 (82)
T ss_pred ceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence 457899999999999999999999998776543
No 159
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.65 E-value=6.6e-07 Score=44.85 Aligned_cols=59 Identities=25% Similarity=0.364 Sum_probs=41.9
Q ss_pred CEEEEeeCCEecCCCCC-----EEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 45 INIKWQKGDKIIKPSKY-----FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
..+.|++++..+..... .++...+. .|.+..+..+|+|.|+|.+.|...-....+.|+|
T Consensus 41 ~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 41 LSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred ceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence 58999998644433221 23333332 7999999999999999999998877776766654
No 160
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.65 E-value=1e-07 Score=44.79 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
..|.|.+++.+|+|.|+|.|.|..|......
T Consensus 37 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 67 (71)
T cd05723 37 HNLQVLGLVKSDEGFYQCIAENDVGNVQASA 67 (71)
T ss_pred CCEEEEcCCcccCEEEEEEEEcCCCEEEEEE
Confidence 4688899999999999999999999877654
No 161
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.65 E-value=8.1e-08 Score=46.94 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|.|.+++.+|+|.|.|.+.|..|......
T Consensus 52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 83 (88)
T cd04968 52 GAVLKIPNIQFEDEGTYECEAENIKGKDTHQG 83 (88)
T ss_pred CCEEEECCCCcccCEEEEEEEEECCCcEEEEE
Confidence 46899999999999999999999998876553
No 162
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.64 E-value=1.4e-07 Score=46.75 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|+|.+++.+|+|.|+|.|.|..|......
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 57 GSEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred CCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 45799999999999999999999998776553
No 163
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.63 E-value=9.3e-08 Score=46.95 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCeEEEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR 39 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 39 (108)
..|+|.+++.+|+|.|.|.+.|..|.......
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (90)
T cd05726 47 GDLTITNVQRSDVGYYICQTLNVAGSILTKAY 78 (90)
T ss_pred CeEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence 47999999999999999999999988766544
No 164
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.62 E-value=1.5e-07 Score=47.11 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=26.5
Q ss_pred CEEEEEEcCCCCCCceEEEEEEEC-CCcCeEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVN-SAGQVEST 37 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~-~~~~~~~~ 37 (108)
++.+|+|.+++.+|+|.|+|.+.+ +.|..+..
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~ 93 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQ 93 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEE
Confidence 568999999999999999999998 45654433
No 165
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.61 E-value=7.5e-08 Score=46.14 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.4
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCe
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQV 34 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~ 34 (108)
..+|.|.++..+|+|.|.|.|.|..|..
T Consensus 43 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 43 NGSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 4689999999999999999999998865
No 166
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.60 E-value=9.1e-08 Score=48.04 Aligned_cols=32 Identities=38% Similarity=0.338 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|+|.+++.+|+|.|+|.|.|..|......
T Consensus 64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~ 95 (101)
T cd05859 64 VSKLKLIRAKEEDSGLYTALAQNEDAVKSYTF 95 (101)
T ss_pred ccEEEEeeCCHHHCEEEEEEEEcCCceEEEEE
Confidence 35899999999999999999999998876543
No 167
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.59 E-value=3.7e-07 Score=44.80 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
....|.|.++..+|.|.|.|.|.|..|......
T Consensus 54 ~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 54 DIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 456899999999999999999999999876553
No 168
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.59 E-value=1.1e-07 Score=44.97 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVE 35 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~ 35 (108)
...|.|.+++.+|+|.|+|.|.|..|...
T Consensus 37 ~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 65 (74)
T cd05738 37 SGALQIENSEESDQGKYECVATNSAGTRY 65 (74)
T ss_pred CcEEEECCCChhhCEEEEEEEECCCCceE
Confidence 45799999999999999999999988753
No 169
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.58 E-value=2.4e-07 Score=45.73 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
..+|.|.+++.+|+|.|+|.|.|..|......
T Consensus 57 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05891 57 YASLTIKGVTSEDSGKYSINVKNKYGGETVDV 88 (92)
T ss_pred EEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence 45899999999999999999999998876554
No 170
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.58 E-value=1.2e-06 Score=42.61 Aligned_cols=57 Identities=23% Similarity=0.458 Sum_probs=40.0
Q ss_pred CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEE--EEEEEEE
Q psy2149 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL--TANLKVL 106 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~--~~~l~v~ 106 (108)
..+.|..++..+....++.....+ |.|..++..|+|.|.|.+.-. |.... ...|.|.
T Consensus 25 A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E~-gf~~~~~~y~l~v~ 83 (85)
T cd05872 25 ASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEEE-GFQQLVASYSLNVV 83 (85)
T ss_pred ccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEecC-CCeEEEEEEEEEEe
Confidence 688999999887665555444443 778899999999999997633 33333 4455554
No 171
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.57 E-value=2.6e-07 Score=43.88 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
...|.|.++..+|.|.|+|.+.|..|.....
T Consensus 38 ~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 68 (76)
T cd05736 38 GSELHISNVRYEDTGAYTCIAKNEAGVDEDI 68 (76)
T ss_pred CCEEEECcCCcccCEEEEEEEEcCCCCcceE
Confidence 3479999999999999999999998876544
No 172
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.56 E-value=2.4e-07 Score=45.93 Aligned_cols=31 Identities=29% Similarity=0.214 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
..|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 60 ~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~ 90 (94)
T cd05756 60 DLLWFLPAALEDSGLYTCVVRNSTYCMKVSI 90 (94)
T ss_pred CeEEEccCCcccCeEEEEEEcCCCccEEEEE
Confidence 5799999999999999999999988876654
No 173
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.56 E-value=2.7e-07 Score=42.28 Aligned_cols=49 Identities=27% Similarity=0.459 Sum_probs=33.1
Q ss_pred ecC-CEEEEeeCCEecCCCCCEEEEEeCCE--EEEEEccCCCCCCeEEEEEE
Q psy2149 42 VKT-INIKWQKGDKIIKPSKYFQMSKEGDS--YVLRISEAFPEDEGQYKCIA 90 (108)
Q Consensus 42 ~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~c~~ 90 (108)
+.+ ..+.|.+++................. ..|.|.++..+|+|.|.|.+
T Consensus 13 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 13 GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp SSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 345 89999999876543332222222211 13999999999999999975
No 174
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.56 E-value=4.1e-07 Score=44.14 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
...|+|.+++.+|+|.|.|.+.+..+
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECcc
Confidence 67899999999999999999998754
No 175
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.55 E-value=1.6e-07 Score=45.76 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=26.8
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
....|+|.+++.+|+|.|+|.|.|..+.....
T Consensus 48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred eeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 36789999999999999999999987654433
No 176
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.55 E-value=2.8e-07 Score=46.09 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=26.7
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcCeEE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~ 36 (108)
.+..+|+|.+++.+|+|.|+|.+.+..+..+.
T Consensus 62 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~ 93 (100)
T cd05713 62 EGSVALRIHNVRASDEGLYTCFFQSDGFYEEA 93 (100)
T ss_pred CCcEEEEEEcCChhhCEEEEEEEecCCcEEEE
Confidence 45689999999999999999999987654433
No 177
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.54 E-value=2.5e-07 Score=44.02 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
..|.|.+++.+|+|.|+|.|.|..|......
T Consensus 41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd05868 41 DTIIFSKVQERSSAVYQCNASNEYGYLLANA 71 (76)
T ss_pred CEEEECCCCHhhCEEEEEEEEcCCCEEEEEE
Confidence 3789999999999999999999999887654
No 178
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.54 E-value=9e-06 Score=40.25 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=27.7
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
....|.|.+++.+|.|.|.|.+.+... .+....|+|
T Consensus 60 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v 95 (95)
T cd05717 60 NELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV 95 (95)
T ss_pred CeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence 345799999999999999999987653 455555554
No 179
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.54 E-value=5.3e-06 Score=39.94 Aligned_cols=61 Identities=20% Similarity=0.383 Sum_probs=37.0
Q ss_pred cC-CEEEEeeCCEecCCCCCE-EEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCcce--EEEEEE
Q psy2149 43 KT-INIKWQKGDKIIKPSKYF-QMSKEGD----SYVLRISEAFPEDEGQYKCIATNQGGQV--VLTANL 103 (108)
Q Consensus 43 ~p-~~~~w~~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~g~y~c~~~n~~~~~--~~~~~l 103 (108)
.| +.++|++++..+...... ....++. .+.|.+......|.+.|+|.+.|..... +.++.|
T Consensus 12 ~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 12 KPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred cCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 57 899999999876533211 1111111 2256666666667889999999875433 334444
No 180
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.53 E-value=2.8e-07 Score=43.52 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|.|.++..+|.|.|+|.|.|..|......
T Consensus 39 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05764 39 NGTLDILITTVKDTGSFTCIASNAAGEATATV 70 (74)
T ss_pred CCEEEEEECChhhCEEEEEEEECCCCeEEEEE
Confidence 34799999999999999999999998766543
No 181
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.53 E-value=2.5e-07 Score=45.67 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~ 36 (108)
...|.|.++..+|+|.|+|.+.|..+....
T Consensus 51 ~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 51 GSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred CCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 458999999999999999999988765543
No 182
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.52 E-value=1.3e-07 Score=46.89 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=27.1
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEECCCcCeE
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVE 35 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~ 35 (108)
+.+..+|+|.+++.+|+|.|.|.+.+..+..+
T Consensus 61 ~~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~~ 92 (94)
T cd07690 61 DQGSFPLIIKNLKIEDSDTYICEVEDKKEEVE 92 (94)
T ss_pred CCCeEEEEECCCCHHHCEEEEEEECCccceEE
Confidence 45678899999999999999999988766543
No 183
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.52 E-value=3.6e-07 Score=43.80 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=25.4
Q ss_pred EEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 9 SLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 9 ~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
.|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 46 ~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~ 74 (79)
T cd04973 46 EVQIKDAVPRDSGLYACVTSSPSGSDTTY 74 (79)
T ss_pred EEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence 69999999999999999999988765543
No 184
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.51 E-value=2.8e-07 Score=44.78 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
..|+|.++..+|+|.|+|.|.|..|......
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 51 GDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred CEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 4799999999999999999999999877654
No 185
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.50 E-value=3.3e-07 Score=43.72 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=25.6
Q ss_pred CCEEEEEEcCCCC----CCceEEEEEEECCCcCeEE
Q psy2149 5 GTTASLVLNTTYE----EDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 5 ~~~~~l~i~~v~~----~d~G~Y~C~~~~~~~~~~~ 36 (108)
...+.|.|.++.. +|+|.|+|.|.|..|...+
T Consensus 36 ~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 36 PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 3456888888754 7899999999999987654
No 186
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.49 E-value=4.7e-07 Score=44.85 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=40.2
Q ss_pred EEecC-CEEEEeeCCEe-cCCCCCEEEEEeCCEEEEEEccCCCCCCe-EEEEEEEcCCcce
Q psy2149 40 LTVKT-INIKWQKGDKI-IKPSKYFQMSKEGDSYVLRISEAFPEDEG-QYKCIATNQGGQV 97 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~~~n~~~~~ 97 (108)
..|.| |.+.|..++.. +....+..+..++ .|.|.++..+|.| .|.|.+.|.....
T Consensus 28 P~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 28 PKSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred CCCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEcccccc
Confidence 46788 99999976543 2233444444444 8999999999999 7999999886443
No 187
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.49 E-value=3e-07 Score=44.58 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~ 36 (108)
...|.|.+++.+|+|.|+|.+.|..|...+
T Consensus 50 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 50 DGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 357999999999999999999999887543
No 188
>PHA03376 BARF1; Provisional
Probab=98.49 E-value=4.3e-06 Score=46.14 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=25.5
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
++++.+|.|.+++.+|.|.|+|.+.-...
T Consensus 83 ~~gnvsLvI~~l~lSDdGtY~C~fQkge~ 111 (221)
T PHA03376 83 SANTFFLVVTAANISHDGNYLCRMKLGET 111 (221)
T ss_pred cCCeEEEEEEeeeecCCceEEEEEEcCCC
Confidence 46899999999999999999999986543
No 189
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.45 E-value=8.1e-07 Score=44.51 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=24.8
Q ss_pred CEEEEEEcCCCCCCceEEEEEEEC-CCcCe
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVN-SAGQV 34 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~-~~~~~ 34 (108)
+..+|+|.+++.+|+|.|.|.+.+ +.|..
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~ 91 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNF 91 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCe
Confidence 577899999999999999999986 45544
No 190
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.45 E-value=4.7e-07 Score=43.92 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|.|.+++.+|+|.|.|.+.|..|......
T Consensus 51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 51 NGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred CCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 45899999999999999999999998876653
No 191
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.44 E-value=5e-07 Score=46.47 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=25.5
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
.++.+|.|.+++.+|.|.|+|.+.|+.+
T Consensus 77 ~~daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 77 RKDGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred cCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence 4678999999999999999999998865
No 192
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.43 E-value=4.6e-07 Score=42.69 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCcCe
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAGQV 34 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~~~ 34 (108)
.+|.|.++..+|+|.|+|.+.+.....
T Consensus 36 ~~L~I~~v~~~D~G~YtC~a~~~~~~~ 62 (72)
T cd07702 36 YSLVIKDVTEEDAGIYTILLGIKQYNL 62 (72)
T ss_pred CEEEECcCCHHHCEEEEEEEEccccce
Confidence 479999999999999999999975443
No 193
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.42 E-value=5.5e-06 Score=41.89 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=27.4
Q ss_pred EEEEccCCCCCCeEEEEEEEcCC-cceEEEEEEEE
Q psy2149 72 VLRISEAFPEDEGQYKCIATNQG-GQVVLTANLKV 105 (108)
Q Consensus 72 ~l~i~~~~~~d~g~y~c~~~n~~-~~~~~~~~l~v 105 (108)
.|.|.++...|.|.|.|.+.+.. ........|.|
T Consensus 71 SL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 71 SLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred cEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 79999999999999999999877 44555655543
No 194
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.41 E-value=7.6e-07 Score=45.00 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=26.3
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcCeE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVE 35 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~ 35 (108)
.+..+|+|.+++.+|+|.|.|.+.+..+...
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~ 95 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQ 95 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCCceE
Confidence 4688999999999999999999997655433
No 195
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.41 E-value=1.2e-06 Score=43.49 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=26.9
Q ss_pred CEEEEEEcCCCCCCceEEEEEEE-CCCcCeEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAV-NSAGQVESTA 38 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~-~~~~~~~~~~ 38 (108)
++.+|.|.+++.+|+|.|+|.+. .+.|+....+
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~ 91 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSST 91 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEE
Confidence 46799999999999999999986 4466665543
No 196
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.41 E-value=1.1e-06 Score=43.60 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.5
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
+..+|.|.+++.+|+|.|+|.+...
T Consensus 60 ~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 60 TELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ceEEEEECCCCcccCEEEEEEEEee
Confidence 4689999999999999999999863
No 197
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.40 E-value=7.8e-06 Score=40.59 Aligned_cols=38 Identities=32% Similarity=0.436 Sum_probs=31.5
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEc-CCcceEEEEEEEEE
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATN-QGGQVVLTANLKVL 106 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n-~~~~~~~~~~l~v~ 106 (108)
....|.|.+++.+|+|.|.|.+.. +.|.......|.|+
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEeC
Confidence 345899999999999999999874 67888888888773
No 198
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.39 E-value=2.1e-06 Score=42.93 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=31.3
Q ss_pred EEEEEccCCCCCCeEEEEEEEc-CCcceEEEEEEEE
Q psy2149 71 YVLRISEAFPEDEGQYKCIATN-QGGQVVLTANLKV 105 (108)
Q Consensus 71 ~~l~i~~~~~~d~g~y~c~~~n-~~~~~~~~~~l~v 105 (108)
..|.|.+++.+|+|.|.|.+.+ +.|..+..+.|+|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 3799999999999999999999 7888888888877
No 199
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.39 E-value=6.6e-06 Score=42.08 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=32.6
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
....|.|.+++.+|+|.|.|.+.+........+.|.|..
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 445899999999999999999998877777777777653
No 200
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.37 E-value=3.4e-06 Score=40.06 Aligned_cols=54 Identities=30% Similarity=0.519 Sum_probs=36.9
Q ss_pred ecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCc-ceEEEEEEEE
Q psy2149 42 VKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG-QVVLTANLKV 105 (108)
Q Consensus 42 ~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~-~~~~~~~l~v 105 (108)
+.| +.+.|++++..+.. ... .+.+..+..+|.|.|.|.+.+..+ .....+.|.|
T Consensus 25 ~~p~~~~~w~~~~~~~~~--------~~~--~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 25 GNPPPQVQWYKNGSPINS--------SQN--GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SSSSSEEEEEETTEEEEE--------ESS--EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cccceeeeeeeeeeeeee--------eee--eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 556 88999998755531 111 266678888999999999999664 3334556554
No 201
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.36 E-value=1.2e-06 Score=43.66 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=26.4
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEECCCcCe
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQV 34 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~ 34 (108)
+.+..+|+|.+++.+|+|.|.|.+....+..
T Consensus 57 ~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~ 87 (97)
T cd05775 57 SQNDYSLQISNLKMEDAGSYRAEINTKNGVT 87 (97)
T ss_pred cCCceeEEECCCchHHCEEEEEEEEcCCCCe
Confidence 3557899999999999999999998776543
No 202
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.36 E-value=1.5e-06 Score=43.90 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
.+..+|+|.+++.+|+|.|.|.+.+..+.....
T Consensus 65 ~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~ 97 (106)
T cd05877 65 DLDASLVITDLRLEDYGRYRCEVIDGLEDESVV 97 (106)
T ss_pred CCcEEEEEccCChHHCEEEEEEEEecccceEEE
Confidence 346789999999999999999998876655443
No 203
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.36 E-value=2.1e-06 Score=42.71 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=26.3
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECC-CcCeEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNS-AGQVEST 37 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~-~~~~~~~ 37 (108)
.+.+|+|.|++.+|+|.|+|.+... .|.....
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~ 90 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKV 90 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEE
Confidence 4679999999999999999999755 5665544
No 204
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.36 E-value=1.3e-06 Score=39.31 Aligned_cols=28 Identities=39% Similarity=0.498 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
.....|.|.+++.+|+|.|+|.+.+..|
T Consensus 36 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 36 ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 4456899999999999999999988653
No 205
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.35 E-value=2.2e-06 Score=42.61 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=26.0
Q ss_pred CEEEEEEcCCCCCCceEEEEEEEC-CCcCeEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVN-SAGQVEST 37 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~-~~~~~~~~ 37 (108)
+..+|+|.+++.+|+|.|.|.+.. +.|.....
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~ 92 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKV 92 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEE
Confidence 568999999999999999999975 45555443
No 206
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.35 E-value=2e-06 Score=43.76 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=27.7
Q ss_pred EEEEEEcCCC-CCCceEEEEEEECCCcCeEEEEE
Q psy2149 7 TASLVLNTTY-EEDSGLFTLRAVNSAGQVESTAR 39 (108)
Q Consensus 7 ~~~l~i~~v~-~~d~G~Y~C~~~~~~~~~~~~~~ 39 (108)
...|+|.++. .+|.|.|+|.|.|..|.......
T Consensus 68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 68 TSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred eeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 3579999997 69999999999999988765543
No 207
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.34 E-value=2.5e-06 Score=39.85 Aligned_cols=30 Identities=37% Similarity=0.501 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|+|.++. |+|.|+|.|.|..|......
T Consensus 37 ~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a 66 (69)
T cd05739 37 RNVLELTNIY--ESANYTCVAISSLGMIEATA 66 (69)
T ss_pred ccEEEEeccc--cCeeEEEEEEeCCCEEEEEE
Confidence 4478999974 89999999999999876654
No 208
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.34 E-value=2.7e-06 Score=42.20 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=24.5
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
.+...+|+|.+++.+|+|.|.|++....
T Consensus 58 ~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p 85 (95)
T cd05881 58 SSNELRVSLSNVSLSDEGRYFCQLYTDP 85 (95)
T ss_pred CCCEEEEEECcCCcccCEEEEEEEEccc
Confidence 3568899999999999999999998654
No 209
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.33 E-value=1e-06 Score=45.30 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
.+..+|+|.+++.+|+|.|.|.+.+..+
T Consensus 76 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 76 RRDASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CCceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 3577899999999999999999997754
No 210
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.31 E-value=2.3e-06 Score=40.79 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=24.2
Q ss_pred CEEEEEEcCCCC----CCceEEEEEEECCCcCeEE
Q psy2149 6 TTASLVLNTTYE----EDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 6 ~~~~l~i~~v~~----~d~G~Y~C~~~~~~~~~~~ 36 (108)
..+.|.|..+.. .|+|.|+|.|.|..|...+
T Consensus 37 ~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 37 NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 345777877764 3789999999999987655
No 211
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.31 E-value=2.8e-06 Score=42.19 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=23.2
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
+..+|+|.+++.+|+|.|.|.+.+..
T Consensus 60 ~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 60 HELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred CcEEEEECcCCcccCEEEEEEeEeec
Confidence 45789999999999999999998754
No 212
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.30 E-value=2e-06 Score=42.56 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=24.9
Q ss_pred EEEEEcCCC-CCCceEEEEEEECCCcCeEE
Q psy2149 8 ASLVLNTTY-EEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 8 ~~l~i~~v~-~~d~G~Y~C~~~~~~~~~~~ 36 (108)
..|.|.++. .+|+|.|.|.|.|..|...+
T Consensus 57 g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 57 GNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 479999985 69999999999999987654
No 213
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.30 E-value=2.5e-06 Score=43.47 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
.+..+|+|.+++.+|+|.|.|.+.....
T Consensus 69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~~ 96 (110)
T cd05878 69 RGDASLEISRLRSSDSGVYRCEVMHGIE 96 (110)
T ss_pred CCcEEEEECCCChhhCEEEEEEEEeCCC
Confidence 4678999999999999999999986543
No 214
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.30 E-value=1.9e-06 Score=42.88 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=25.8
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECC-CcCeEE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNS-AGQVES 36 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~-~~~~~~ 36 (108)
.+..+|+|.+++.+|+|.|.|.+... .|....
T Consensus 58 ~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~ 90 (97)
T cd05846 58 LNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSG 90 (97)
T ss_pred CCccEEEEeCCceeeeEEEEEEEEeCCCCCeee
Confidence 45789999999999999999998744 455443
No 215
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.29 E-value=3.8e-06 Score=41.58 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
....|+|.+++.+|+|.|.|.+....
T Consensus 60 ~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 60 NELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred CeeEEEEccCCcccCEEEEEEEecCC
Confidence 46789999999999999999998654
No 216
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.28 E-value=1.8e-06 Score=44.40 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
++.+|+|.+++.+|+|.|.|.+.+...
T Consensus 78 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 78 KDASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred CeeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 468999999999999999999997754
No 217
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.28 E-value=2.1e-06 Score=42.56 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=24.6
Q ss_pred EEEEEcCCC-CCCceEEEEEEECCCcCeEE
Q psy2149 8 ASLVLNTTY-EEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 8 ~~l~i~~v~-~~d~G~Y~C~~~~~~~~~~~ 36 (108)
..|.|.++. .+|+|.|+|.|.|..|...+
T Consensus 58 g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 58 GNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 478898885 69999999999999987654
No 218
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.28 E-value=2.3e-06 Score=42.09 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=24.7
Q ss_pred EEEEEcCCC-CCCceEEEEEEECCCcCeEE
Q psy2149 8 ASLVLNTTY-EEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 8 ~~l~i~~v~-~~d~G~Y~C~~~~~~~~~~~ 36 (108)
..|.|.++. .+|+|.|+|.|.|..|...+
T Consensus 58 ~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 58 GNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 478898887 49999999999999987654
No 219
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.28 E-value=5.6e-05 Score=37.57 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=48.1
Q ss_pred CCCCceEEEEEEECCCcCeEEEEEEEecC-CEEEEeeCCEecCCCCCEEEEE-eCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy2149 16 YEEDSGLFTLRAVNSAGQVESTARLTVKT-INIKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQ 93 (108)
Q Consensus 16 ~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p-~~~~w~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~~~n~ 93 (108)
...++-...|.+.+....... ...| ..+-|+.+.... ...++.... ......|.|..++.+|+|.|.|.+...
T Consensus 10 ~~G~ta~L~C~v~~~~~~~v~----w~~~~~~~i~~~~~~~~-~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 10 VEGEVAIISCRVKNNDDSVIQ----LLNPNRQTIYFRDVRPL-KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred cCCCcEEEEEEEccCCccEEE----EEecCCcEEEecCcccc-CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 356777899999876532221 1144 455555554333 445665554 345668999999999999999998753
No 220
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.28 E-value=1.7e-06 Score=42.89 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCe
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQV 34 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~ 34 (108)
...|.|.++..+|+|.|+|.+.+..+..
T Consensus 54 ~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 54 STYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred CCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 3479999999999999999999886543
No 221
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.27 E-value=3.7e-06 Score=41.90 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCCC-ceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEED-SGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d-~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|+|.++..+| .|.|.|.|.|..|......
T Consensus 63 ~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~ 95 (98)
T cd05758 63 LSTLTISNTQESDFQTSYNCTAWNSFGSGTAII 95 (98)
T ss_pred EEEEEECCccccccceeEEEEEEcCCCcccEEE
Confidence 3589999999955 8999999999998766543
No 222
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.27 E-value=4.6e-06 Score=42.14 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=34.0
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
....|.|.+++.+|.|.|.|.+.+..+.....+.|.|.+
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 445899999999999999999999877778888888875
No 223
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.26 E-value=3.9e-06 Score=41.55 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=24.5
Q ss_pred EEEEEcCCC-CCCceEEEEEEECCCcCeEE
Q psy2149 8 ASLVLNTTY-EEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 8 ~~l~i~~v~-~~d~G~Y~C~~~~~~~~~~~ 36 (108)
..|.|.++. .+|+|.|+|.|.|..|...+
T Consensus 58 g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 58 GNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 478888865 69999999999999997755
No 224
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.25 E-value=8.9e-07 Score=43.97 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=24.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
.++.|.|.+|+.+|+|.|+|.|.|...
T Consensus 58 ~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 58 TNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CCCcEEEeecCHhhCceeEEEEEeccc
Confidence 367999999999999999999998753
No 225
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.24 E-value=4.7e-06 Score=42.84 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQ 33 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~ 33 (108)
.++.+|.|.+++.+|+|.|+|.+......
T Consensus 76 ~g~asL~i~~v~~sD~G~Y~C~V~~g~~~ 104 (117)
T cd05901 76 QGDASLTIVKLRASDAGVYRCEVMHGIED 104 (117)
T ss_pred CCceEEEEcccccccCEEEEEEEEECCcc
Confidence 36789999999999999999999876543
No 226
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.24 E-value=3.3e-06 Score=43.21 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
.+..+|+|.+++.+|+|.|+|.+.+..
T Consensus 71 ~~~asL~I~nl~~sDsG~Y~C~V~~g~ 97 (112)
T cd05900 71 PSDATLEITELRSNDSGTYRCEVMHGI 97 (112)
T ss_pred CCCcEEEEeecccccCEEEEEEEecCC
Confidence 368899999999999999999998664
No 227
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.24 E-value=5.8e-06 Score=39.79 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=27.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
....|.|.++..+|.|.|.|.+.|..|.....
T Consensus 49 ~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~ 80 (85)
T cd05729 49 KKWTLILESVVPSDSGKYTCIVENKYGSINHT 80 (85)
T ss_pred cEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence 34679999999999999999999988775544
No 228
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.23 E-value=1.2e-06 Score=42.40 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCe
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQV 34 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~ 34 (108)
...|.|.+++.+|+|.|+|.+.+..+..
T Consensus 47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 47 NSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred CceEEECccCHHHCEEEEEEEEeCCcee
Confidence 5689999999999999999999887644
No 229
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.23 E-value=9.2e-06 Score=46.55 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=31.2
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 72 ~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
.|.|.++..+|+|.|.|.+.|..+.....+.|.|.
T Consensus 99 ~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~ 133 (227)
T PHA02826 99 NLWIGNVINIDEGIYICTISSGNICEESTIRLTFD 133 (227)
T ss_pred eEEECCCChHHCEEEEEEEEECCcceEEEEEEEEe
Confidence 79999999999999999999988887777777764
No 230
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.23 E-value=6.9e-06 Score=41.46 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=33.7
Q ss_pred EEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 70 SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 70 ~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
...|.|.+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus 67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 67 DASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred cEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 45799999999999999999999988888888888864
No 231
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.21 E-value=6.9e-06 Score=39.17 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=24.1
Q ss_pred EEEEEEcCCC----CCCceEEEEEEECCCcCeEEE
Q psy2149 7 TASLVLNTTY----EEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 7 ~~~l~i~~v~----~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
...|.|.++. ..|+|.|.|.|.|..|...+.
T Consensus 38 ~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 38 SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4588888764 246999999999999876543
No 232
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.21 E-value=9.2e-06 Score=40.70 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=30.8
Q ss_pred EEEEEEccCCCCCCeEEEEEEEc-CCcceEEEEEEEE
Q psy2149 70 SYVLRISEAFPEDEGQYKCIATN-QGGQVVLTANLKV 105 (108)
Q Consensus 70 ~~~l~i~~~~~~d~g~y~c~~~n-~~~~~~~~~~l~v 105 (108)
...|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 44799999999999999999987 6777777888876
No 233
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.20 E-value=1.7e-06 Score=39.55 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=17.4
Q ss_pred EEEcCCCCCCceEEEEEE
Q psy2149 10 LVLNTTYEEDSGLFTLRA 27 (108)
Q Consensus 10 l~i~~v~~~d~G~Y~C~~ 27 (108)
|.|.+++.+|+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999986
No 234
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.18 E-value=8.6e-06 Score=40.67 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=28.2
Q ss_pred CCEEEEEEcCCCCCC-ceEEEEEEECCCcCeEEE
Q psy2149 5 GTTASLVLNTTYEED-SGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d-~G~Y~C~~~~~~~~~~~~ 37 (108)
+....|+|.++...| .|.|.|.|.|..|.....
T Consensus 61 g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~ 94 (98)
T cd05898 61 GVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAI 94 (98)
T ss_pred CcEEEEEECCCccccCCcEEEEEEEeCCccceEE
Confidence 467889999998877 799999999999887654
No 235
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.18 E-value=6.8e-06 Score=40.31 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
+++|+|.+++.+|+|.|+|.+....+
T Consensus 56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~ 81 (92)
T cd05741 56 NGSLLIQNLTKEDSGTYTLQIISTNG 81 (92)
T ss_pred CceEEEccCCchhcEEEEEEEEcCCC
Confidence 37999999999999999999987764
No 236
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.18 E-value=4.8e-06 Score=42.44 Aligned_cols=27 Identities=33% Similarity=0.308 Sum_probs=24.2
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
.++.+|.|.+++.+|+|.|+|.+....
T Consensus 69 ~~~asL~i~nv~~~D~G~Y~C~v~~g~ 95 (110)
T cd05902 69 RYNASLVLSRLRYSDSGTYRCEVVLGI 95 (110)
T ss_pred CceEEEEECCCCHHHCEEEEEEEEECC
Confidence 368899999999999999999998754
No 237
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.14 E-value=4.3e-06 Score=42.35 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=24.2
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
.+..+|+|.+++.+|+|.|.|.+.+..
T Consensus 67 ~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 67 RKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 468899999999999999999998654
No 238
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.13 E-value=1.1e-05 Score=40.59 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
...|.|.++..+|+|.|+|.+.|.......+
T Consensus 69 ~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~ 99 (104)
T cd05896 69 EDSIWFRPAELQDSGLYTCVLRNSTYCMKVS 99 (104)
T ss_pred CCEEEEEeCChhhCeEEEEEECCCCcceEEE
Confidence 4489999999999999999999987554433
No 239
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.13 E-value=4.2e-06 Score=42.02 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.4
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
+..+|+|.+++.+|+|.|.|.+.+..+
T Consensus 65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 65 SSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 678999999999999999999987654
No 240
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.12 E-value=6.9e-06 Score=41.55 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=23.4
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
+++|.|++++.+|+|.|+|.+.+...
T Consensus 69 ngSL~I~~v~~~D~G~Y~~~v~~~~~ 94 (105)
T cd05774 69 NGSLLIQNVTQKDTGFYTLQTITTNF 94 (105)
T ss_pred CCcEEEecCCcccCEEEEEEEEeCCc
Confidence 56999999999999999999988763
No 241
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.10 E-value=1.8e-05 Score=39.36 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=31.4
Q ss_pred EEEEEccCCCCCCeEEEEEEE-cCCcceEEEEEEEEE
Q psy2149 71 YVLRISEAFPEDEGQYKCIAT-NQGGQVVLTANLKVL 106 (108)
Q Consensus 71 ~~l~i~~~~~~d~g~y~c~~~-n~~~~~~~~~~l~v~ 106 (108)
..|.|.++..+|.|.|.|.+. .+.|+.+....|+|.
T Consensus 60 ~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 60 ATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTVL 96 (96)
T ss_pred cEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEEC
Confidence 389999999999999999964 578999999998873
No 242
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.09 E-value=1e-05 Score=42.85 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=31.6
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 72 ~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
.|.|.+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~ 37 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE 37 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec
Confidence 688999999999999999999888888888887764
No 243
>PHA02633 hypothetical protein; Provisional
Probab=98.08 E-value=1.3e-05 Score=36.16 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=25.6
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
....|.|-++..+|+|.|.|..+|..-....+
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~s 47 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMK 47 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEE
Confidence 34589999999999999999999876544443
No 244
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.05 E-value=0.00019 Score=35.94 Aligned_cols=27 Identities=41% Similarity=0.712 Sum_probs=23.8
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGG 95 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~ 95 (108)
....|.|.+++.+|.|.|.|.+.+..+
T Consensus 65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 65 SSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 567899999999999999999987654
No 245
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.04 E-value=3.4e-05 Score=39.33 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=33.4
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
....|.|.+++.+|+|.|.|.+.......+..+.|.|..
T Consensus 70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 445899999999999999999998777788888888764
No 246
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.04 E-value=1.1e-05 Score=39.50 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
..|.|.+++.+|+|.|.|.+.+..+
T Consensus 51 ~~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 51 DGLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred CCEEEccCCHHHCEEEEEEEecCcc
Confidence 3589999999999999999987654
No 247
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.01 E-value=3.5e-05 Score=36.55 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~ 36 (108)
...|.|.++..+|+|.|.|.+.+..+....
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00410 50 NSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 578999999999999999999977665443
No 248
>smart00409 IG Immunoglobulin.
Probab=98.01 E-value=3.5e-05 Score=36.55 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~ 36 (108)
...|.|.++..+|+|.|.|.+.+..+....
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00409 50 NSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 578999999999999999999977665443
No 249
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.01 E-value=7.4e-05 Score=36.74 Aligned_cols=62 Identities=8% Similarity=0.079 Sum_probs=40.1
Q ss_pred CCCCCceEEEEEEECCCcCeEEEEEEEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy2149 15 TYEEDSGLFTLRAVNSAGQVESTARLTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93 (108)
Q Consensus 15 v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 93 (108)
|...+.-..+|.+. .+ ..+.|++++...... . .........+.|.++..+|+|.|.|...+.
T Consensus 13 V~~G~~VtL~C~~~--------------~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 13 VPLGKPVTLRCQGP--------------YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred cCCCCcEEEEEecC--------------CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 44566667777663 23 667788877543211 0 111123337999999999999999999876
No 250
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.01 E-value=5e-06 Score=40.60 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCCceEEEEEEECC
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
..|.|.+++.+|+|.|+|.+.+.
T Consensus 48 ~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 48 DGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcEEEeCCCHHHCEEEEEEEEec
Confidence 46999999999999999999866
No 251
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.00 E-value=4.3e-06 Score=39.86 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.8
Q ss_pred CCEEEEEEcCCCCCCceEEEEEE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRA 27 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~ 27 (108)
.+..+|+|.+++.+|+|.|.|.+
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEcC
Confidence 56789999999999999999963
No 252
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.00 E-value=1.6e-05 Score=39.20 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCCceEEEEEEEC-CCc
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVN-SAG 32 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~-~~~ 32 (108)
..|.|.++..+|+|.|.|.+.+ ..+
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEccCCe
Confidence 4699999999999999999984 444
No 253
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.99 E-value=1.3e-05 Score=39.95 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.4
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
++...+|+|.+++.+|+|.|.|.+.+.
T Consensus 59 ~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 59 SGNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred cCCEEEEEECCCChhhCEEEEEEEccC
Confidence 446788999999999999999998753
No 254
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.99 E-value=1.1e-05 Score=37.71 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCCCceEEEEEEEC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVN 29 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~ 29 (108)
....|.|.++..+|.|.|+|.|.|
T Consensus 52 ~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 52 SNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeeEEEEccCCHHhCcEEEEEEEC
Confidence 467899999999999999999976
No 255
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.98 E-value=0.00014 Score=35.44 Aligned_cols=56 Identities=23% Similarity=0.513 Sum_probs=36.5
Q ss_pred CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
+.++|...+..... .... ....|.+..+...|+|+++|.+............+.|.
T Consensus 31 ~~i~w~~P~n~~~~----~~~~--~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 31 FKVEWRGPGNKSKQ----ILNQ--DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred ccEEEeCCCCccce----eccC--CccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 48899865543211 0111 12278999999999999999997654444556666665
No 256
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.97 E-value=1.2e-05 Score=39.55 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
....|.|.+|+.+|+|.|+|.+.+.
T Consensus 51 ~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 51 NKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred eeEEEEccCCChhHCEEEEEEEECC
Confidence 3567999999999999999999875
No 257
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.96 E-value=1.3e-05 Score=38.32 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
...|+|.++ .+|+|.|+|.|.+..
T Consensus 46 ~~~l~i~~~-~~dsG~Y~C~a~~~~ 69 (78)
T cd05752 46 TNSYRIRAA-NNDSGEYRCQTQGSS 69 (78)
T ss_pred CCeEEEeec-ccCCEEeEEECCCCc
Confidence 347899999 999999999998764
No 258
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.95 E-value=6.6e-05 Score=38.67 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=33.7
Q ss_pred EEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 70 SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 70 ~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
...|.|.+++..|.|.|.|.+.......+..+.|.|..
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 45899999999999999999999988888888888764
No 259
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.95 E-value=0.0004 Score=35.08 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=26.7
Q ss_pred CCEEEEEe--CCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 60 KYFQMSKE--GDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 60 ~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
.++.+... ...+.|.|.+++.+|+|.|.|.+.+..
T Consensus 57 ~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 57 GRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 34444332 356789999999999999999998754
No 260
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.94 E-value=0.0003 Score=33.99 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=39.7
Q ss_pred ecC-CEEEEeeCCEecCCCCCEEEEE-e--CCEEEEEEccCCCCCCeEEEEEEEcCCc-ceEEEEEEEEE
Q psy2149 42 VKT-INIKWQKGDKIIKPSKYFQMSK-E--GDSYVLRISEAFPEDEGQYKCIATNQGG-QVVLTANLKVL 106 (108)
Q Consensus 42 ~~p-~~~~w~~~~~~~~~~~~~~~~~-~--~~~~~l~i~~~~~~d~g~y~c~~~n~~~-~~~~~~~l~v~ 106 (108)
+.| ..+.|++++..+.......... . ...+.|.+..-...|...|+|.+.|+.- ..+....|.|.
T Consensus 11 SkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 11 SKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred CCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 568 9999999998885432111111 1 1223566655555567789999998653 23446666664
No 261
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.93 E-value=0.00036 Score=35.20 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=25.3
Q ss_pred CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy2149 61 YFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93 (108)
Q Consensus 61 ~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 93 (108)
++..........|.|.+++.+|+|.|.|.+.+.
T Consensus 61 r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 61 RFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 444444445568999999999999999998753
No 262
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.93 E-value=5e-05 Score=38.75 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=33.6
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
....|.|.+++.+|.|.|.|.+.......+..+.|.|..
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 456899999999999999999998877778888888764
No 263
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.91 E-value=1.3e-05 Score=39.88 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
.+..+|+|.+++.+|+|.|.|.+....
T Consensus 61 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 61 NGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 567899999999999999999987654
No 264
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.89 E-value=4.6e-05 Score=39.35 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.5
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
..+..+|+|.+++.+|+|.|.|.+...
T Consensus 76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 76 GKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred CCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 356789999999999999999998654
No 265
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.89 E-value=1.5e-05 Score=40.27 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
+....|+|.+++.+|+|.|.|.+.+.
T Consensus 68 ~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 68 GTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCEEEEEECCCChHHCEEEEEEEeCC
Confidence 45678999999999999999998653
No 266
>PHA02633 hypothetical protein; Provisional
Probab=97.88 E-value=0.00011 Score=33.20 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=30.8
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2149 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107 (108)
Q Consensus 72 ~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~~ 107 (108)
.|.|.++..+|+|.|.|...|.......++.|.|..
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 678888999999999999999888788788887753
No 267
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.88 E-value=3.5e-05 Score=38.11 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=22.9
Q ss_pred EEEEEcCC-----CCCCceEEEEEEECC-CcCeEE
Q psy2149 8 ASLVLNTT-----YEEDSGLFTLRAVNS-AGQVES 36 (108)
Q Consensus 8 ~~l~i~~v-----~~~d~G~Y~C~~~~~-~~~~~~ 36 (108)
.+|.|.++ ..+|.|.|.|.|.|. .|...+
T Consensus 54 ~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s 88 (95)
T cd05722 54 GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVS 88 (95)
T ss_pred CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEE
Confidence 35666666 689999999999999 887643
No 268
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.87 E-value=4.5e-05 Score=37.75 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.2
Q ss_pred CCCCCCceEEEEEEECCCcCe
Q psy2149 14 TTYEEDSGLFTLRAVNSAGQV 34 (108)
Q Consensus 14 ~v~~~d~G~Y~C~~~~~~~~~ 34 (108)
+++.+|+|.|+|.+.|..|..
T Consensus 70 ~~~~~D~G~Y~C~a~N~~G~~ 90 (100)
T cd07693 70 RKGRSDEGVYVCVAHNSLGEA 90 (100)
T ss_pred CCCcCcCEEEEEEEEccccce
Confidence 347999999999999999873
No 269
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.87 E-value=1.5e-05 Score=39.58 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=24.4
Q ss_pred CEEEEEEcCCCCCCce-EEEEEEECCCcC
Q psy2149 6 TTASLVLNTTYEEDSG-LFTLRAVNSAGQ 33 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G-~Y~C~~~~~~~~ 33 (108)
.+++|.|.+|+.+|.| .|.|.|.+....
T Consensus 56 ~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 56 QNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred CCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 4589999999999999 899999988643
No 270
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.86 E-value=0.00013 Score=35.75 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.4
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCc
Q psy2149 71 YVLRISEAFPEDEGQYKCIATNQGG 95 (108)
Q Consensus 71 ~~l~i~~~~~~d~g~y~c~~~n~~~ 95 (108)
..|.|.+++.+|+|.|.|.+....+
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~ 81 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNG 81 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCC
Confidence 4899999999999999999987764
No 271
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.86 E-value=1.7e-05 Score=40.15 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=23.5
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
.+..+|+|.+++.+|+|.|.|.+...
T Consensus 76 ~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 76 QNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTEEEEEESSESGGGEEEEEEEEEES
T ss_pred CCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 35789999999999999999999866
No 272
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.84 E-value=0.00031 Score=33.85 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=31.9
Q ss_pred ecC-CEEEEeeCCEecCCCCCEEEEEeCC----EEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2149 42 VKT-INIKWQKGDKIIKPSKYFQMSKEGD----SYVLRISEAFPEDEGQYKCIATNQGGQ 96 (108)
Q Consensus 42 ~~p-~~~~w~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~c~~~n~~~~ 96 (108)
+.| +.++|++++..+............. ...|.+......+.+.|+|.+.+....
T Consensus 11 ~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 11 SKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred cCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 458 8999999998775332111111111 113444333344568999999987654
No 273
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.83 E-value=0.00076 Score=34.54 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=26.1
Q ss_pred CCEEEEEeC--CEEEEEEccCCCCCCeEEEEEEEc
Q psy2149 60 KYFQMSKEG--DSYVLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 60 ~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~~~n 92 (108)
.++.+.... ....|.|.+++.+|+|.|.|.+..
T Consensus 64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 455555444 567899999999999999999874
No 274
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.83 E-value=0.00021 Score=35.58 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=28.4
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceE-EEEEEEE
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVV-LTANLKV 105 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~-~~~~l~v 105 (108)
....|.|.+++.+|+|.|.|.+.+..+... ..+.|.|
T Consensus 59 ~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 59 NDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred CceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 345899999999999999999988765443 3555554
No 275
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.80 E-value=9.8e-05 Score=38.06 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=26.5
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEE
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~ 102 (108)
....+.|.+++.+|.|.|+|.+.|..+.......
T Consensus 78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~ 111 (116)
T cd05879 78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQ 111 (116)
T ss_pred CeeEEEEccCCcccCEEEEEEEEcCCCcCCceeE
Confidence 3347999999999999999999998664443333
No 276
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.76 E-value=0.00013 Score=36.30 Aligned_cols=36 Identities=39% Similarity=0.408 Sum_probs=30.2
Q ss_pred EEEEEEccCCCCCCeEEEEEEE-cCCcceEEEEEEEE
Q psy2149 70 SYVLRISEAFPEDEGQYKCIAT-NQGGQVVLTANLKV 105 (108)
Q Consensus 70 ~~~l~i~~~~~~d~g~y~c~~~-n~~~~~~~~~~l~v 105 (108)
...|.|.+++.+|+|.|.|... .+.|.......|+|
T Consensus 60 ~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 60 STSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred ccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 3479999999999999999976 56777777888876
No 277
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.76 E-value=3.7e-05 Score=39.09 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
....|+|.+++.+|+|.|.|.+.+.
T Consensus 70 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 70 TRSSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CccEEEECCCChhhCEEEEEEeeCC
Confidence 5689999999999999999999764
No 278
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.75 E-value=9e-05 Score=35.71 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~ 36 (108)
...|.|.++ .|+|.|.|.|.|..|...+
T Consensus 48 ~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 48 PSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 347888887 4789999999999986654
No 279
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.75 E-value=7.5e-05 Score=41.24 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=25.2
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECC-Cc-CeEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNS-AG-QVEST 37 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~-~~-~~~~~ 37 (108)
....|+|.+|+.+|+|.|+|.+... .| .....
T Consensus 83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt 116 (189)
T PHA02987 83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGV 116 (189)
T ss_pred CcceEEEEeCChhhCeEEEEEEEecCCCCCceeE
Confidence 4678999999999999999999744 45 44433
No 280
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.73 E-value=2.9e-05 Score=36.24 Aligned_cols=22 Identities=45% Similarity=0.750 Sum_probs=20.0
Q ss_pred EEEEEccCCCCCCeEEEEEEEc
Q psy2149 71 YVLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 71 ~~l~i~~~~~~d~g~y~c~~~n 92 (108)
..|.+..+..+|.|.|+|.+.|
T Consensus 54 ~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 54 STLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEESSCCGGGTEEEEEEEEE
T ss_pred eEEEEccCCHHhCcEEEEEEEC
Confidence 3799999999999999999976
No 281
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.73 E-value=5.2e-05 Score=38.88 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCCCceEEEEEEEC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVN 29 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~ 29 (108)
....|+|.+++.+|+|.|.|.+..
T Consensus 75 ~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 75 STSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CEEEEEEEECCHHHCEEEEEEEec
Confidence 578999999999999999999864
No 282
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.72 E-value=4e-05 Score=38.67 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEEC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVN 29 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~ 29 (108)
.....|+|.+++.+|+|.|.|.+..
T Consensus 66 ~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 66 SNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred CCEEEEEECCCCHHHCEEEEEEEcc
Confidence 5678899999999999999999863
No 283
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.66 E-value=0.0013 Score=32.62 Aligned_cols=34 Identities=38% Similarity=0.509 Sum_probs=26.7
Q ss_pred CCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy2149 60 KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93 (108)
Q Consensus 60 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 93 (108)
.++..........|.|.+++.+|+|.|.|.+.+.
T Consensus 52 ~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 52 DRFSGSKSGNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CCEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence 3455555556678999999999999999998753
No 284
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.64 E-value=5.3e-05 Score=38.38 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEEC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVN 29 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~ 29 (108)
+....|+|.+++.+|+|.|.|....
T Consensus 69 ~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 69 SSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred CCEEEEEECCCCHHHCEEEEEeEcC
Confidence 3467899999999999999999853
No 285
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.64 E-value=6.8e-05 Score=38.49 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
++..+|+|.+++.+|+|.|.|.+...
T Consensus 69 ~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 69 QKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred CCEEEEEECCCCHHHCEEEEEEEECC
Confidence 45789999999999999999999753
No 286
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.62 E-value=0.0014 Score=31.68 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=33.4
Q ss_pred ecC-CEEEEeeCCEecCCCCCEEEEEeC-CE----EEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2149 42 VKT-INIKWQKGDKIIKPSKYFQMSKEG-DS----YVLRISEAFPEDEGQYKCIATNQGGQV 97 (108)
Q Consensus 42 ~~p-~~~~w~~~~~~~~~~~~~~~~~~~-~~----~~l~i~~~~~~d~g~y~c~~~n~~~~~ 97 (108)
+.| ..++|++++..+............ .. ..|.+......+...|+|.+.+.....
T Consensus 11 ~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 11 SKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred ccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 458 899999999877543221111111 11 234443444556789999999876433
No 287
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.58 E-value=0.0018 Score=32.83 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=22.4
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
....|.|.+++.+|+|.|.|.+.+..
T Consensus 70 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 70 TRSSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred CccEEEECCCChhhCEEEEEEeeCCC
Confidence 45689999999999999999988653
No 288
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.57 E-value=0.00037 Score=34.96 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
...|++.++..+|.|.|+|.|.|........
T Consensus 64 ~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~t 94 (101)
T cd05860 64 VSELHLTRLKGTEGGTYTFLVSNSDASASVT 94 (101)
T ss_pred EEEEEEeecChhhCcEEEEEEECCCCeEEEE
Confidence 4789999999999999999999998766554
No 289
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.54 E-value=0.00029 Score=36.17 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.3
Q ss_pred EEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2149 70 SYVLRISEAFPEDEGQYKCIATNQGGQ 96 (108)
Q Consensus 70 ~~~l~i~~~~~~d~g~y~c~~~n~~~~ 96 (108)
...|.|.+++.+|+|.|.|.+.|....
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence 357999999999999999999977553
No 290
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.49 E-value=0.00072 Score=33.69 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=26.1
Q ss_pred EEEEEccCCCCCCeEEEEEEEc-CCcceEEEEEE
Q psy2149 71 YVLRISEAFPEDEGQYKCIATN-QGGQVVLTANL 103 (108)
Q Consensus 71 ~~l~i~~~~~~d~g~y~c~~~n-~~~~~~~~~~l 103 (108)
..|.|.+++.+|.|.|.|.+.. +.|..+..+.+
T Consensus 60 ~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 60 MSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred cEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 3799999999999999999865 56666655443
No 291
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.46 E-value=0.0018 Score=29.02 Aligned_cols=50 Identities=32% Similarity=0.483 Sum_probs=33.2
Q ss_pred CEEEEeeCCEecCCCCCE----EEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 45 INIKWQKGDKIIKPSKYF----QMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
..+.|++++......... ..........|.+.++...|.|.|.|.+.+..
T Consensus 13 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 13 PTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 788999887654332210 01111233478888999999999999998765
No 292
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.46 E-value=0.00038 Score=35.80 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=23.9
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQ 96 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~ 96 (108)
....|.|.+++.+|+|.|.|.+.|..+.
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 77 RDASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 3457999999999999999999987654
No 293
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.45 E-value=0.0026 Score=31.24 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=31.1
Q ss_pred CEEEEeeCCEecCCCCC-EEE--EEeCCE---EEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2149 45 INIKWQKGDKIIKPSKY-FQM--SKEGDS---YVLRISEAFPEDEGQYKCIATNQGGQ 96 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~~~-~~~--~~~~~~---~~l~i~~~~~~d~g~y~c~~~n~~~~ 96 (108)
..+.|++++..+..... ... ..++.. +.|.+......+.+.|+|.+.+....
T Consensus 30 ~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 30 ITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred cEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 68999999887754322 111 111221 13444444445899999999987543
No 294
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.44 E-value=0.0013 Score=33.12 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=31.5
Q ss_pred CCEEEEEe--CCEEEEEEccCCCCCCeEEEEEEEcC-CcceEEEEEEEE
Q psy2149 60 KYFQMSKE--GDSYVLRISEAFPEDEGQYKCIATNQ-GGQVVLTANLKV 105 (108)
Q Consensus 60 ~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~n~-~~~~~~~~~l~v 105 (108)
.+..+..+ .....|.|.+++.+|+|.|.|.+... .........|.|
T Consensus 66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp TTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred eeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 34444444 34668999999999999999998876 233333555544
No 295
>KOG3515|consensus
Probab=97.41 E-value=0.00069 Score=44.88 Aligned_cols=95 Identities=18% Similarity=0.074 Sum_probs=64.9
Q ss_pred EEEEcCCCCCCceEEEEEEECCCcCeEEEEE--------------------------------EEecC--CEEEEeeCCE
Q psy2149 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTAR--------------------------------LTVKT--INIKWQKGDK 54 (108)
Q Consensus 9 ~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~--------------------------------~~~~p--~~~~w~~~~~ 54 (108)
.+........|.|.|.|.+.+......++.. ..+.| +.+.|....-
T Consensus 362 ~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~ 441 (741)
T KOG3515|consen 362 SHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLY 441 (741)
T ss_pred EeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecce
Confidence 4455667789999999999988644433332 44666 7888988776
Q ss_pred ecCCCCC--EEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 55 IIKPSKY--FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 55 ~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
.+.+... +.+.... ......++.+.|.|.|.|.+.|..|.....+.+.+
T Consensus 442 ~~~~~~g~~~~v~~~~--~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~ 492 (741)
T KOG3515|consen 442 KLSQVDGGVVRVGAGA--GLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGV 492 (741)
T ss_pred ecccccCceEEeeccc--cccccceeeeccCCcceeeeccCCCceeeEEeecc
Confidence 6654432 3333222 14446678889999999999999988887665443
No 296
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.36 E-value=0.003 Score=35.16 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=29.3
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEc-CCc-ceEEEEEEEEE
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATN-QGG-QVVLTANLKVL 106 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n-~~~-~~~~~~~l~v~ 106 (108)
....+.|.++..+|+|.|.|...- +.| ..+....|.|.
T Consensus 83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEE
Confidence 445899999999999999998754 556 55557777765
No 297
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.35 E-value=0.00092 Score=30.03 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=23.7
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
.....|.|.++...|.|.|.|.+.+..
T Consensus 40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 40 SGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred eeEEEEEECccCcccCcEEEEEEecCc
Confidence 357789999999999999999998765
No 298
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.34 E-value=0.0039 Score=30.87 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=28.1
Q ss_pred CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEE
Q psy2149 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 91 (108)
..+.|++++...................+.|..++..|+|.|.|...
T Consensus 29 ~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 29 DRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 45668887644221100000011223378999999999999999975
No 299
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.30 E-value=0.0035 Score=30.32 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=32.3
Q ss_pred ecC-CEEEEeeCCEecCCCCCEEEEE-eC----CEEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2149 42 VKT-INIKWQKGDKIIKPSKYFQMSK-EG----DSYVLRISEAFPEDEGQYKCIATNQGGQ 96 (108)
Q Consensus 42 ~~p-~~~~w~~~~~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~d~g~y~c~~~n~~~~ 96 (108)
+.| ..++|++++..+.......... .. ....|.+..-...+...|+|.+.+..-.
T Consensus 11 f~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 11 SKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred ccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 457 8899999998875432211111 11 1124555444445578999999876543
No 300
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.23 E-value=0.00024 Score=34.59 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCCceEEEEEEEC
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVN 29 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~ 29 (108)
..|.|.+++.+|+|.|.|.+..
T Consensus 47 ~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 47 DGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred CCCEEEECCHhhCEEEEEEEec
Confidence 3578999999999999999873
No 301
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.18 E-value=0.00043 Score=32.63 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEcCCCCCCceEEEEEEECCCc
Q psy2149 10 LVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 10 l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
|.|.++..+|.|.|+|.+.+..+
T Consensus 47 ~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 47 LFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp EEESSEEGGGTEEEEEEEEETTE
T ss_pred eeeeeeccccCEEEEEEEEeCCC
Confidence 77889999999999999998665
No 302
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.18 E-value=0.00097 Score=33.01 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCCceEEEEEEEC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVN 29 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~ 29 (108)
...+.|.+++.+|+|.|+|.+..
T Consensus 54 ~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 54 QASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred EEEEEecCCCcccCEEEEEEEEC
Confidence 56789999999999999999863
No 303
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.12 E-value=0.0037 Score=31.00 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=22.9
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 68 GDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 68 ~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
.....|.|.+++.+|+|.|.|.+....
T Consensus 61 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 61 NGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 355689999999999999999987654
No 304
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.03 E-value=0.00086 Score=34.58 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEEC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVN 29 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~ 29 (108)
....|+|.++..+|+|.|.|.+..
T Consensus 74 ~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 74 STVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CEEEEEECCCCHHHCEEEEEEEEc
Confidence 356899999999999999998864
No 305
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.02 E-value=0.0014 Score=31.57 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=23.4
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQ 33 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~ 33 (108)
...|.|......|.+.|+|+|.|..+.
T Consensus 42 ~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 42 SNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 347999999999999999999998654
No 306
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.00 E-value=0.007 Score=37.57 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=25.1
Q ss_pred CEEEEEEccCCCCCCeEEEEEEEcCCcceEEE
Q psy2149 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100 (108)
Q Consensus 69 ~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~ 100 (108)
..++|+|..++....|-|+|.+.......++.
T Consensus 344 k~STLTIkka~I~N~GCY~~~a~~g~~~~ec~ 375 (500)
T PHA02914 344 KNSTLTIKKAHINNAGCYEAQAFMGKFKEECR 375 (500)
T ss_pred hhceEEeeeEEEEcCCceEEEEecCcchhhhh
Confidence 44589999999999999999998765554443
No 307
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.92 E-value=0.003 Score=36.91 Aligned_cols=47 Identities=17% Similarity=0.363 Sum_probs=35.9
Q ss_pred CEEEEeeCC-EecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 45 INIKWQKGD-KIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 45 ~~~~w~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
|.+.|..++ ..+.......+...+ .|.+.+....++|.|+|......
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 889999765 444444556666555 79999999999999999987554
No 308
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.88 E-value=0.017 Score=29.22 Aligned_cols=25 Identities=36% Similarity=0.739 Sum_probs=21.3
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEEc
Q psy2149 68 GDSYVLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 68 ~~~~~l~i~~~~~~d~g~y~c~~~n 92 (108)
.....|.|.+++.+|.|.|.|...+
T Consensus 69 ~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 69 SSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred CCEEEEEECCCCHHHCEEEEEeEcC
Confidence 3456799999999999999999763
No 309
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.86 E-value=0.0023 Score=30.24 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=22.8
Q ss_pred CCEEEEEe--CCEEEEEEccCCCCCCeEEEEE
Q psy2149 60 KYFQMSKE--GDSYVLRISEAFPEDEGQYKCI 89 (108)
Q Consensus 60 ~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~ 89 (108)
.++.+... .....|.|.+++.+|.|.|.|.
T Consensus 49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 34444433 4556899999999999999996
No 310
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.85 E-value=0.018 Score=29.01 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=25.1
Q ss_pred CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEc
Q psy2149 61 YFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 61 ~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n 92 (108)
++..........|.|.+++.+|+|+|.|.+.+
T Consensus 59 rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 59 RFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred eEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 34444445667899999999999999998763
No 311
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.61 E-value=0.016 Score=29.39 Aligned_cols=36 Identities=36% Similarity=0.514 Sum_probs=28.3
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEEEEe
Q psy2149 72 VLRISEAFPEDEGQYKCIATNQGGQVVL-TANLKVLD 107 (108)
Q Consensus 72 ~l~i~~~~~~d~g~y~c~~~n~~~~~~~-~~~l~v~~ 107 (108)
.|.|..++.+|+|.|.-++.+..|.... .+++.|.|
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVFD 108 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVFD 108 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE-
T ss_pred eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEeeC
Confidence 7999999999999999999998887765 66776653
No 312
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.57 E-value=0.034 Score=28.47 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=25.6
Q ss_pred CCEEEEE--eCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy2149 60 KYFQMSK--EGDSYVLRISEAFPEDEGQYKCIATNQ 93 (108)
Q Consensus 60 ~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~~~n~ 93 (108)
.++.+.. ......|.|.+++.+|.|.|.|.+...
T Consensus 59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 4454442 234568999999999999999998853
No 313
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.57 E-value=0.032 Score=28.11 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=40.3
Q ss_pred CCCCCceEEEEEEECCCcCeEEEEEEEecC-CE--EEEeeCCEecCCCCCEEE--EEeCCEEEEEEccCCCCCC-eEEEE
Q psy2149 15 TYEEDSGLFTLRAVNSAGQVESTARLTVKT-IN--IKWQKGDKIIKPSKYFQM--SKEGDSYVLRISEAFPEDE-GQYKC 88 (108)
Q Consensus 15 v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p-~~--~~w~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~-g~y~c 88 (108)
+...+.-..+|.+.+ +.| .. +.|++++..+........ ........+.+. +.++|. -.|+|
T Consensus 13 ~~eG~~~tL~C~v~g------------~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC 79 (100)
T cd05755 13 QPVGKNYTLQCDVPG------------VAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSC 79 (100)
T ss_pred ccCCCcEEEEEEEcC------------cCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEE
Confidence 345555677888755 457 54 799999987743211100 001122345554 445554 58999
Q ss_pred EEEcCCcce
Q psy2149 89 IATNQGGQV 97 (108)
Q Consensus 89 ~~~n~~~~~ 97 (108)
.+.+.+...
T Consensus 80 ~A~l~l~~~ 88 (100)
T cd05755 80 ETELDLRPE 88 (100)
T ss_pred EEEeccCcc
Confidence 999876543
No 314
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.56 E-value=0.0084 Score=30.95 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCCCCCeEEEEEEEcC
Q psy2149 68 GDSYVLRISEAFPEDEGQYKCIATNQ 93 (108)
Q Consensus 68 ~~~~~l~i~~~~~~d~g~y~c~~~n~ 93 (108)
...+.|.|.+++.+|+|.|.|.+...
T Consensus 77 ~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 77 KKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred CCEEEEEEccCChhhCeEEEEEEEcC
Confidence 45568999999999999999998654
No 315
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.53 E-value=0.0051 Score=31.10 Aligned_cols=34 Identities=29% Similarity=0.583 Sum_probs=27.1
Q ss_pred EeCCEEEEEEcCCCCCCceEEEEEEECCCcCeEE
Q psy2149 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES 36 (108)
Q Consensus 3 ~~~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~ 36 (108)
++-.+.+|.|..+++.|+|.|..++.+..|....
T Consensus 66 F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~ 99 (108)
T PF11465_consen 66 FTSENLALLIKAAQPQDSGLYCLEVTNESGKVCT 99 (108)
T ss_dssp EETTTTEEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred eeccCceEEEeecCcccCceEEEEEEcCCCcEEE
Confidence 4556779999999999999999999998887643
No 316
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.47 E-value=0.0051 Score=31.65 Aligned_cols=25 Identities=4% Similarity=0.165 Sum_probs=21.9
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEE
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAV 28 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~ 28 (108)
.++..+|+|.+++.+|++.|.|...
T Consensus 70 s~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 70 GNEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred CCCEEEEEEcCCCHHHCeEEEEEee
Confidence 3568899999999999999999764
No 317
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.45 E-value=0.009 Score=28.57 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCCceEEEEEEECCC
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
..|.|......|.|.|+|.|.|..
T Consensus 46 s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 46 STLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred EEEEEeCceecCCCEEEEEEcCcc
Confidence 467788888888999999999875
No 318
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.40 E-value=0.023 Score=28.33 Aligned_cols=64 Identities=8% Similarity=0.028 Sum_probs=33.6
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCC---EEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGD---SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~ 104 (108)
..+.| ..++|+.+...... .......++. .+.|.+......+...++|.+.+..-.....+.++
T Consensus 25 ~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 25 ANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred CCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 34778 99999987211100 0011111111 12455444444556789999999875555544443
No 319
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.37 E-value=0.026 Score=26.31 Aligned_cols=21 Identities=19% Similarity=0.589 Sum_probs=16.7
Q ss_pred EEEEccCCCCCCeEEEEEEEc
Q psy2149 72 VLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 72 ~l~i~~~~~~d~g~y~c~~~n 92 (108)
.|.+........|.|.|.+.+
T Consensus 34 tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 34 LLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred EEeccCcccCCCcceEecCcc
Confidence 566667677779999999876
No 320
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.33 E-value=0.045 Score=27.24 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=30.5
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEE--EeCC---EEEEEEccCCCCCCeEEEEEEEcCCcceEE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMS--KEGD---SYVLRISEAFPEDEGQYKCIATNQGGQVVL 99 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~ 99 (108)
..|.| +.+.|+++. ......... .++. .+.|.+......+...|+|.+.+..-....
T Consensus 25 ~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~ 87 (95)
T cd05719 25 ANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQ 87 (95)
T ss_pred CCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence 34778 999999861 111111111 1111 124554444444567899999988644443
No 321
>PHA02982 hypothetical protein; Provisional
Probab=96.22 E-value=0.011 Score=33.63 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=27.6
Q ss_pred eEeCCEEEEEEcCCCCCCceEEEEEEECCCcC
Q psy2149 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQ 33 (108)
Q Consensus 2 ~~~~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~ 33 (108)
+.++...+|+|.++..+..|.|+|++....+.
T Consensus 94 sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k 125 (251)
T PHA02982 94 SVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGK 125 (251)
T ss_pred EEeccceeEEeccCCcccCCceEEEEecCCCc
Confidence 45678899999999999999999999876543
No 322
>PHA03376 BARF1; Provisional
Probab=96.13 E-value=0.1 Score=29.49 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=24.9
Q ss_pred EEEEeCCEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 63 ~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
.+..+.....|.|.+++.+|.|.|.|.+....
T Consensus 79 D~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge 110 (221)
T PHA03376 79 DIHRSANTFFLVVTAANISHDGNYLCRMKLGE 110 (221)
T ss_pred EEEecCCeEEEEEEeeeecCCceEEEEEEcCC
Confidence 34344566689999999999999999987543
No 323
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.03 E-value=0.068 Score=26.49 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=37.7
Q ss_pred CCCCceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCC-CEEEEEe-C-CEEEEEEccCCCCCCeEEEEEE
Q psy2149 16 YEEDSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSK-YFQMSKE-G-DSYVLRISEAFPEDEGQYKCIA 90 (108)
Q Consensus 16 ~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~-~~~~~~~-~-~~~~l~i~~~~~~d~g~y~c~~ 90 (108)
........+|.+.+. .| ..+.|.+++..+.... ......+ + .......-.+...+...|+|.+
T Consensus 12 ~~~~~~~L~C~~~gF------------yP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V 79 (94)
T cd05766 12 SLSHPHLLVCHVWGF------------YPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVV 79 (94)
T ss_pred cCCCCeEEEEEEeee------------cCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEE
Confidence 345556888888653 35 6889999998765431 1111111 1 1212222223334567899999
Q ss_pred EcCCc
Q psy2149 91 TNQGG 95 (108)
Q Consensus 91 ~n~~~ 95 (108)
.....
T Consensus 80 ~H~~l 84 (94)
T cd05766 80 EHSSL 84 (94)
T ss_pred EeCCC
Confidence 87543
No 324
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.91 E-value=0.064 Score=25.24 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=27.6
Q ss_pred CEEEEeeCCEecCCCCC-EEE-E-EeCCE---EEEEEccCCCCCCeEEEEEEEcCC
Q psy2149 45 INIKWQKGDKIIKPSKY-FQM-S-KEGDS---YVLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~~~-~~~-~-~~~~~---~~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
..+.|++++..+..... ... . .++.. +.|.+......+...|+|.+....
T Consensus 16 i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 16 ITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 68999999876433211 111 1 12211 134444434456789999987653
No 325
>KOG3515|consensus
Probab=95.87 E-value=0.015 Score=39.06 Aligned_cols=85 Identities=20% Similarity=0.272 Sum_probs=51.2
Q ss_pred EEEEcCCCCCCceEEEEEEECCCcCeEEE-EE-------------------------------EEecC-CEEEEeeCCEe
Q psy2149 9 SLVLNTTYEEDSGLFTLRAVNSAGQVEST-AR-------------------------------LTVKT-INIKWQKGDKI 55 (108)
Q Consensus 9 ~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~-~~-------------------------------~~~~p-~~~~w~~~~~~ 55 (108)
.|.........-+.|.|.+.|..+..... +. ..+.| +.+.|..+...
T Consensus 60 ~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~ 139 (741)
T KOG3515|consen 60 TLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRA 139 (741)
T ss_pred ceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEE
Confidence 55666666777788999988874432221 11 34456 88999887754
Q ss_pred cCCCC--CEE------EEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy2149 56 IKPSK--YFQ------MSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93 (108)
Q Consensus 56 ~~~~~--~~~------~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 93 (108)
..... ... .........+.+...+..+.|.|+|.+.|.
T Consensus 140 e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 140 ELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred eecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 32111 000 001011225666777788899999999984
No 326
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=95.86 E-value=0.076 Score=25.69 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=32.9
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEE-eC-C---EEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSK-EG-D---SYVLRISEAFPEDEGQYKCIATNQGGQV 97 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~-~~-~---~~~l~i~~~~~~d~g~y~c~~~n~~~~~ 97 (108)
..+.| +.+.|+.++............. .. . .+.|.+..-...+...++|.+.+.....
T Consensus 24 ~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 24 SGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp EEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred CCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 44788 9999999886651111111111 11 1 1245554444445788999999876543
No 327
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.75 E-value=0.083 Score=25.32 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=36.7
Q ss_pred CCceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCCCEE-EE-EeCCEE----EEEEccCCCCCCeEEEEE
Q psy2149 18 EDSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSKYFQ-MS-KEGDSY----VLRISEAFPEDEGQYKCI 89 (108)
Q Consensus 18 ~d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~~~~-~~-~~~~~~----~l~i~~~~~~d~g~y~c~ 89 (108)
.....+.|.+.+. .| ..+.|.+++..+....... .. ..+..+ .|.+. ..+...|.|.
T Consensus 8 ~~~~~L~C~v~~f------------~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~ 72 (83)
T PF07654_consen 8 GGSVTLTCLVSGF------------YPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCR 72 (83)
T ss_dssp TSEEEEEEEEEEE------------BSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEE
T ss_pred CCCEEEEEEEEEE------------ECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEE
Confidence 4556777877553 35 5899999988765442211 11 222222 23333 4456689999
Q ss_pred EEcCCc
Q psy2149 90 ATNQGG 95 (108)
Q Consensus 90 ~~n~~~ 95 (108)
+.....
T Consensus 73 V~H~~l 78 (83)
T PF07654_consen 73 VTHESL 78 (83)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 987643
No 328
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.52 E-value=0.13 Score=25.81 Aligned_cols=64 Identities=9% Similarity=0.183 Sum_probs=35.3
Q ss_pred CceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCCC--EEEEE-eCCEE---EEEEccCCCCCCeEEEEEE
Q psy2149 19 DSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSKY--FQMSK-EGDSY---VLRISEAFPEDEGQYKCIA 90 (108)
Q Consensus 19 d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~~--~~~~~-~~~~~---~l~i~~~~~~d~g~y~c~~ 90 (108)
+.-..+|.+.+. .| ..+.|.+++..+..... ..... ++... .|.+....-.+...|+|.+
T Consensus 18 ~~~~L~C~~~gf------------yP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V 85 (100)
T cd07699 18 GKATLVCLINDF------------YPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEV 85 (100)
T ss_pred CCcEEEEEEEeE------------ECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEE
Confidence 445788888653 35 78899999987643211 01111 22111 2333322223467899999
Q ss_pred EcCC
Q psy2149 91 TNQG 94 (108)
Q Consensus 91 ~n~~ 94 (108)
....
T Consensus 86 ~H~~ 89 (100)
T cd07699 86 THEG 89 (100)
T ss_pred EecC
Confidence 8654
No 329
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=95.26 E-value=0.15 Score=25.28 Aligned_cols=60 Identities=20% Similarity=0.363 Sum_probs=33.7
Q ss_pred ceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCCC-EE-EEEeCCEE----EEEEccCCCCCCeEEEEEEE
Q psy2149 20 SGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSKY-FQ-MSKEGDSY----VLRISEAFPEDEGQYKCIAT 91 (108)
Q Consensus 20 ~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~~-~~-~~~~~~~~----~l~i~~~~~~d~g~y~c~~~ 91 (108)
.....|.|.+. .| ..+.|.+++..+..... .. ....+..+ .|.+. ..+...|+|.+.
T Consensus 17 ~~tL~C~a~gF------------yP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~ 81 (94)
T cd05767 17 PNTLICFVDNF------------FPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVE 81 (94)
T ss_pred CeEEEEEEEEE------------ECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEE
Confidence 34677777543 35 78899999887644211 11 11212211 23333 345668999997
Q ss_pred cCC
Q psy2149 92 NQG 94 (108)
Q Consensus 92 n~~ 94 (108)
...
T Consensus 82 H~~ 84 (94)
T cd05767 82 HWG 84 (94)
T ss_pred eCC
Confidence 653
No 330
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.25 E-value=0.15 Score=25.07 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=35.4
Q ss_pred CCceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCCC-EEEEEe-CCE-EEEEEccCCCCCCeEEEEEEEc
Q psy2149 18 EDSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSKY-FQMSKE-GDS-YVLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 18 ~d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~~-~~~~~~-~~~-~~l~i~~~~~~d~g~y~c~~~n 92 (108)
.+.-...|.+.+. .| ..++|.+++..+..... .....+ +.. .......+...+...|+|.+.+
T Consensus 14 ~~~~~L~C~a~gF------------~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H 81 (93)
T cd07698 14 DGSLTLSCHATGF------------YPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEH 81 (93)
T ss_pred CCcEEEEEEEEEE------------eCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEe
Confidence 4456778877543 35 58899998853322211 111111 211 1222223344478899999987
Q ss_pred CCc
Q psy2149 93 QGG 95 (108)
Q Consensus 93 ~~~ 95 (108)
...
T Consensus 82 ~~~ 84 (93)
T cd07698 82 SGL 84 (93)
T ss_pred CCC
Confidence 643
No 331
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=95.11 E-value=0.16 Score=24.51 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=23.8
Q ss_pred EEEEccCCCCCCeEEEEEE-EcCCcceEEEEEEEE
Q psy2149 72 VLRISEAFPEDEGQYKCIA-TNQGGQVVLTANLKV 105 (108)
Q Consensus 72 ~l~i~~~~~~d~g~y~c~~-~n~~~~~~~~~~l~v 105 (108)
.........+|.|.+.|.+ .+..-.......|.|
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4566777889999999999 665554444555544
No 332
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=94.83 E-value=0.12 Score=25.38 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
+..+|.+.++...|+|.++|.+...
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEEC
Confidence 5678999999999999999999644
No 333
>KOG1480|consensus
Probab=94.74 E-value=0.04 Score=37.19 Aligned_cols=56 Identities=27% Similarity=0.385 Sum_probs=39.0
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~ 98 (108)
..+.| ..++|++++....+.......... .+.+..+...|.|.|+|.+.|..+...
T Consensus 154 pe~~paae~~w~k~e~~~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 154 PEGDPKAEVEWLKNEVVIDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred cccchhhhhhccccCCCCCccccchhhhcC---Cccccchhhhhcccceeeeehhhcccc
Confidence 55566 678899887665553333232223 588888899999999999998876444
No 334
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=94.73 E-value=0.27 Score=25.25 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=26.9
Q ss_pred CEEEEeeCCEecCCCCCEEEEEeCC-E----EEEEEccCCCCCC-eEEEEEEEcCC
Q psy2149 45 INIKWQKGDKIIKPSKYFQMSKEGD-S----YVLRISEAFPEDE-GQYKCIATNQG 94 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~~~~~~~~~~~-~----~~l~i~~~~~~d~-g~y~c~~~n~~ 94 (108)
..++|++++..+...........+. . +.|.+.. ...|. -.|+|.+....
T Consensus 38 i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 38 ITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred CEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 6899999998875432221222221 1 1233332 33343 45999998764
No 335
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.40 E-value=0.019 Score=30.27 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=20.5
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
.|+.+|.+.....- .|+|+|.+.....+....
T Consensus 83 kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~ 114 (130)
T PF08204_consen 83 KGNASLKMDKSDAV-EGNYTCEVTELSREGETT 114 (130)
T ss_dssp GTB--EEEEHHHHH--EEEEEEEEETTEEEEEE
T ss_pred CCCEEEEEcchhcc-ccceEEEEEecCCCceEE
Confidence 35667888776554 899999998776554443
No 336
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.34 E-value=0.39 Score=25.48 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=21.6
Q ss_pred EEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2149 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106 (108)
Q Consensus 73 l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v~ 106 (108)
|.+.....- .|.|+|.+.......+..+.|...
T Consensus 88 L~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 88 LKMDKSDAV-EGNYTCEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE-
T ss_pred EEEcchhcc-ccceEEEEEecCCCceEEEEEEEE
Confidence 555442222 799999999887777777777653
No 337
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=94.16 E-value=0.093 Score=25.62 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=18.1
Q ss_pred EEEEcCCCCCCceEEEEEEECCCc
Q psy2149 9 SLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 9 ~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
.|.|......|.+.|+|.+.+...
T Consensus 63 ~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 63 QLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EEEECHHHhCCCCCEEEEEEeCCC
Confidence 455555556699999999998764
No 338
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.12 E-value=0.054 Score=31.93 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
.+.|.+.+...+++|.|+|......
T Consensus 36 TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 36 TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CceEEeeccccccCCceEEEEEEEe
Confidence 5679999999999999999987543
No 339
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=93.85 E-value=0.28 Score=22.67 Aligned_cols=37 Identities=32% Similarity=0.600 Sum_probs=22.3
Q ss_pred EEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcC
Q psy2149 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93 (108)
Q Consensus 46 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~ 93 (108)
.+.|.+++..+..... .+.+.+-. ++.|.|.|.+.+.
T Consensus 20 ~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 20 DIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred CceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 4889998855433221 22233333 7799999998543
No 340
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=93.71 E-value=0.44 Score=23.82 Aligned_cols=62 Identities=18% Similarity=0.377 Sum_probs=34.0
Q ss_pred CCceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCCC-EEEEEeCCEE----EEEEccCCCCCCeEEEEEE
Q psy2149 18 EDSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSKY-FQMSKEGDSY----VLRISEAFPEDEGQYKCIA 90 (108)
Q Consensus 18 ~d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~~-~~~~~~~~~~----~l~i~~~~~~d~g~y~c~~ 90 (108)
.+...+.|.|.+. .| ..+.|.+++..+..+.. .....+++.+ .|.+..-. ....|+|.+
T Consensus 16 ~~~~tL~C~a~gF------------yP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V 81 (96)
T cd07697 16 QGQGIYLCLLENF------------FPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIY 81 (96)
T ss_pred CCCEEEEEEEEEE------------eCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEE
Confidence 4556888888653 35 78899999887643311 1111122222 23332221 234599999
Q ss_pred EcC
Q psy2149 91 TNQ 93 (108)
Q Consensus 91 ~n~ 93 (108)
...
T Consensus 82 ~H~ 84 (96)
T cd07697 82 KHE 84 (96)
T ss_pred EEC
Confidence 864
No 341
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.21 E-value=0.57 Score=23.61 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=34.2
Q ss_pred CCceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCCC--EEEEEe---CCE----EEEEEccCCCCCCeEE
Q psy2149 18 EDSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSKY--FQMSKE---GDS----YVLRISEAFPEDEGQY 86 (108)
Q Consensus 18 ~d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~~--~~~~~~---~~~----~~l~i~~~~~~d~g~y 86 (108)
...-..+|.|.+. .| ..++|.+++..+..... .....+ +.. ..|.+..-.-.+...|
T Consensus 16 ~~~~tL~C~a~gF------------yP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~y 83 (102)
T cd05768 16 QETATLTCLVKGF------------SPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVF 83 (102)
T ss_pred CCceEEEEEEeeE------------eCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcE
Confidence 3455777877543 35 68899999877643211 111111 111 1233322222345689
Q ss_pred EEEEEcCC
Q psy2149 87 KCIATNQG 94 (108)
Q Consensus 87 ~c~~~n~~ 94 (108)
+|.+....
T Consensus 84 tC~V~H~~ 91 (102)
T cd05768 84 TCVVGHEA 91 (102)
T ss_pred EEEeEeCC
Confidence 99988654
No 342
>PHA03269 envelope glycoprotein C; Provisional
Probab=92.75 E-value=1.8 Score=28.27 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.3
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
+...|+|.+++..++|.|.=...+.
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~ 311 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHT 311 (566)
T ss_pred CccceEEeecccccCceEEEEEecC
Confidence 4567999999999999998665543
No 343
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=92.61 E-value=0.68 Score=22.97 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=34.3
Q ss_pred eEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCC---CEEEEEeCCE---EEEEEccCCCCCCeEEEEEEEc
Q psy2149 21 GLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSK---YFQMSKEGDS---YVLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 21 G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~---~~~~~~~~~~---~~l~i~~~~~~d~g~y~c~~~n 92 (108)
-...|.|.+. .| ..+.|.+++..+.... ......++.. +.|.+....-.+...|+|.+..
T Consensus 17 ~~L~C~a~gF------------yP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H 84 (94)
T cd05847 17 IQLLCLISGY------------TPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTH 84 (94)
T ss_pred EEEEEEEEeE------------ECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEE
Confidence 4567777543 35 7889999987753221 1111112211 1233332222356799999987
Q ss_pred CCcc
Q psy2149 93 QGGQ 96 (108)
Q Consensus 93 ~~~~ 96 (108)
....
T Consensus 85 ~~~~ 88 (94)
T cd05847 85 QGTT 88 (94)
T ss_pred CCee
Confidence 6543
No 344
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=92.43 E-value=0.17 Score=31.88 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
..+|+|.++..+..|.|.|+|.-..
T Consensus 345 ~STLTIkka~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 345 NSTLTIKKAHINNAGCYEAQAFMGK 369 (500)
T ss_pred hceEEeeeEEEEcCCceEEEEecCc
Confidence 6789999999999999999997553
No 345
>PHA02982 hypothetical protein; Provisional
Probab=92.12 E-value=0.69 Score=26.70 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=30.3
Q ss_pred CEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2149 61 YFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98 (108)
Q Consensus 61 ~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~ 98 (108)
...++.....++|++.++..+..|-|+|.+....+..+
T Consensus 90 ~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E 127 (251)
T PHA02982 90 KYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEE 127 (251)
T ss_pred eEEEEEeccceeEEeccCCcccCCceEEEEecCCCchh
Confidence 34566667777999999999999999999988664443
No 346
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=91.54 E-value=0.47 Score=23.02 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
...|.|..-...|...|+|+|.|+.
T Consensus 43 ~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 43 TSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEECchhhCCCEEEEEEcCcc
Confidence 4456675555566669999999875
No 347
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=91.17 E-value=1.1 Score=22.27 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=33.9
Q ss_pred EEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCCCEEE-EEeCCEE-EEEEccCCCCCCeEEEEEEEcCC
Q psy2149 22 LFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSKYFQM-SKEGDSY-VLRISEAFPEDEGQYKCIATNQG 94 (108)
Q Consensus 22 ~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~~~~~-~~~~~~~-~l~i~~~~~~d~g~y~c~~~n~~ 94 (108)
...|.|.+. .| ..+.|.+++..+........ ...+..+ ......+...+...|+|.+....
T Consensus 19 ~L~C~a~gF------------yP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 19 VLNCYVTGF------------HPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred EEEEEEEEE------------eCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 567777543 35 78899999987651111112 2222221 12222334556778999988643
No 348
>PHA03282 envelope glycoprotein E; Provisional
Probab=91.12 E-value=0.32 Score=31.26 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.7
Q ss_pred EeCCEEEEEEcCCCCCCceEEEEEEE-CC
Q psy2149 3 FEGTTASLVLNTTYEEDSGLFTLRAV-NS 30 (108)
Q Consensus 3 ~~~~~~~l~i~~v~~~d~G~Y~C~~~-~~ 30 (108)
.-++...|+|.|+..+++|.|.|.+. |.
T Consensus 328 ~~~n~VdL~F~nAp~saSGLYVfVl~yNG 356 (540)
T PHA03282 328 WYGHTVNLQLRDASEASGGLYVCVVYVNG 356 (540)
T ss_pred ccCCccceEecCCCcccCceEEEEEEECC
Confidence 34566799999999999999999987 44
No 349
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=90.02 E-value=1.7 Score=22.56 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=37.6
Q ss_pred ceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCCC---EEEEEeCCE----EEEEEccCCCCC-CeEEEEE
Q psy2149 20 SGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSKY---FQMSKEGDS----YVLRISEAFPED-EGQYKCI 89 (108)
Q Consensus 20 ~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d-~g~y~c~ 89 (108)
.-...|.|.+. .| ..+.|.+++..+..... .....++.. +.|.+....-.+ ...|+|.
T Consensus 20 ~~tL~Cla~gF------------yP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~ 87 (115)
T cd05769 20 KATLVCLATGF------------YPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCI 87 (115)
T ss_pred CcEEEEEEEeE------------eCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEE
Confidence 44678887553 35 68899999987653311 111111111 134433322212 5689999
Q ss_pred EEcCCcceEEEE
Q psy2149 90 ATNQGGQVVLTA 101 (108)
Q Consensus 90 ~~n~~~~~~~~~ 101 (108)
+..........+
T Consensus 88 V~H~g~~~~~~~ 99 (115)
T cd05769 88 VQFYGGTDTDKW 99 (115)
T ss_pred EEEeCCccceee
Confidence 987655444443
No 350
>KOG4597|consensus
Probab=89.51 E-value=1.1 Score=29.13 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=42.0
Q ss_pred EEecC-CEEEEeeC---CEe--cCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2149 40 LTVKT-INIKWQKG---DKI--IKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105 (108)
Q Consensus 40 ~~~~p-~~~~w~~~---~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l~v 105 (108)
+.|.+ +.|.|.+. ... ..+.....-..-.....|.|-+....|.|.|+|.+.+..|.....+.+.+
T Consensus 220 ~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s 291 (560)
T KOG4597|consen 220 VQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSS 291 (560)
T ss_pred ccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeee
Confidence 56788 88888642 111 11111110011123346888899999999999999999998887776654
No 351
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=89.28 E-value=1.7 Score=21.64 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=34.7
Q ss_pred CCCCCceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCC--CCEEEEEeCCEE---EEEEccCCCCCCeEEE
Q psy2149 15 TYEEDSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPS--KYFQMSKEGDSY---VLRISEAFPEDEGQYK 87 (108)
Q Consensus 15 v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~--~~~~~~~~~~~~---~l~i~~~~~~d~g~y~ 87 (108)
+..++.-..+|.+.+.. .| ..++|.+++...... .......++... .|.+..-.-.+.-.|+
T Consensus 11 l~~~~~~tLtC~v~gf~-----------yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ys 79 (96)
T cd07696 11 LLLTKSVKLTCLVTNLT-----------SPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQ 79 (96)
T ss_pred hccCCCeEEEEEEeCCC-----------CCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEE
Confidence 34456667888887651 25 788999986432110 111111112111 2323222112345799
Q ss_pred EEEEcCC
Q psy2149 88 CIATNQG 94 (108)
Q Consensus 88 c~~~n~~ 94 (108)
|.+....
T Consensus 80 C~V~H~~ 86 (96)
T cd07696 80 CKVTHPD 86 (96)
T ss_pred EEEECCC
Confidence 9998764
No 352
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=89.20 E-value=1.9 Score=22.17 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=24.3
Q ss_pred CCEEEEEeC--CEEEEEEccCCCCCCeEEEEEEEc
Q psy2149 60 KYFQMSKEG--DSYVLRISEAFPEDEGQYKCIATN 92 (108)
Q Consensus 60 ~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~~~n 92 (108)
.++...... ....|.|.++..+|+|.|.|.+..
T Consensus 63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 344444332 345799999999999999999864
No 353
>PHA03042 CD47-like protein; Provisional
Probab=88.97 E-value=3.5 Score=24.88 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=27.9
Q ss_pred CEEEEeeCCEecCCCCCEEEEEeCCEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy2149 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l 103 (108)
..+.|..++......... ..+.|.+.. ...-.|.|+|++.+..........|
T Consensus 51 ~~V~Wkf~~~~If~~n~t------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 51 IHINWKFNNKVIFKKNNT------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred eEEEEEeCCeeEEEecCC------cceEEEEec-cccCCCceeEEEeecccCccEEEEE
Confidence 568899887654211111 112344432 2233799999998755444444443
No 354
>PHA03273 envelope glycoprotein C; Provisional
Probab=88.57 E-value=5 Score=26.15 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
...|+|..++...+|.|.=...+..+
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~ 222 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNG 222 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCC
Confidence 46699999999999999866555443
No 355
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=87.76 E-value=2.2 Score=21.17 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=32.0
Q ss_pred CceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEecCCCC---CEEEEEeCCE---EEEEEccCCCCCCeEEEEEE
Q psy2149 19 DSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKIIKPSK---YFQMSKEGDS---YVLRISEAFPEDEGQYKCIA 90 (108)
Q Consensus 19 d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~~~~~~---~~~~~~~~~~---~~l~i~~~~~~d~g~y~c~~ 90 (108)
+.-.+.|.|... .| ..++|.+++.. .... ......++.. ..|.+....=.....|+|.+
T Consensus 17 ~~~~L~C~a~gF------------yP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V 83 (95)
T cd04985 17 DSVTLGCLATGF------------LPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKV 83 (95)
T ss_pred CcEEEEEEEeeE------------ECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEE
Confidence 345667777542 35 78899999876 3221 0111112211 12333322111255799999
Q ss_pred EcCC
Q psy2149 91 TNQG 94 (108)
Q Consensus 91 ~n~~ 94 (108)
....
T Consensus 84 ~H~~ 87 (95)
T cd04985 84 EHPS 87 (95)
T ss_pred EeCC
Confidence 8754
No 356
>PHA03283 envelope glycoprotein E; Provisional
Probab=86.91 E-value=1.1 Score=29.41 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.6
Q ss_pred eEeCCEEEEEEcCCCCCCceEEEEEEE
Q psy2149 2 SFEGTTASLVLNTTYEEDSGLFTLRAV 28 (108)
Q Consensus 2 ~~~~~~~~l~i~~v~~~d~G~Y~C~~~ 28 (108)
+..++...|.+.|+...++|.|.|.+.
T Consensus 309 ~~~~~~v~L~f~nap~~~SGLYVfVv~ 335 (542)
T PHA03283 309 QPAQNRVDLLFKNAPASASGLYVFVLL 335 (542)
T ss_pred eecCCCcceEeccCCcccCceEEEEEE
Confidence 345667899999999999999999987
No 357
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=86.41 E-value=2.7 Score=23.29 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
...-|.|.+.+.+|+|.|.-++....
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECC
Confidence 35568999999999999999987543
No 358
>KOG1480|consensus
Probab=85.64 E-value=0.28 Score=33.49 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.5
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQ 33 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~ 33 (108)
.+.|+|..++..|.|+|+|++.|..+.
T Consensus 182 d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 182 DHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred cCCccccchhhhhcccceeeeehhhcc
Confidence 467899999999999999999987654
No 359
>PHA03283 envelope glycoprotein E; Provisional
Probab=84.56 E-value=9.6 Score=25.38 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQ 33 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~ 33 (108)
...|+|.+++.+++|.|+--.++..+.
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~ 159 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMM 159 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCce
Confidence 457999999999999999988876653
No 360
>PHA03271 envelope glycoprotein C; Provisional
Probab=84.35 E-value=8.9 Score=24.86 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=19.4
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
....|.|+++...|+|.|+....+.
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~ 229 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDP 229 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCC
Confidence 4678999999999999775555443
No 361
>PHA03270 envelope glycoprotein C; Provisional
Probab=83.35 E-value=10 Score=24.70 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
...|.|..++...+|.|+=...+..+
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~ 206 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADR 206 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCC
Confidence 34599999999999999988776654
No 362
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=82.39 E-value=4.8 Score=20.32 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=17.2
Q ss_pred CCceEEEEEEECCCcCeEEEEEEEecC--CEEEEeeCCEe
Q psy2149 18 EDSGLFTLRAVNSAGQVESTARLTVKT--INIKWQKGDKI 55 (108)
Q Consensus 18 ~d~G~Y~C~~~~~~~~~~~~~~~~~~p--~~~~w~~~~~~ 55 (108)
.+....+|.+.... .| ..|.|.+++..
T Consensus 19 ~~~atLtClV~~f~-----------~P~~i~V~W~~~g~~ 47 (99)
T cd04986 19 GSSASLTCTLSGLR-----------DPEGAVFTWTPSGGK 47 (99)
T ss_pred CCccEEEEEEeccC-----------CCCCeEEEEEECCcc
Confidence 33457778776533 14 67889988754
No 363
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=82.25 E-value=0.63 Score=29.91 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.4
Q ss_pred EeCCEEEEEEcCCCCCCceEEEEEEEC
Q psy2149 3 FEGTTASLVLNTTYEEDSGLFTLRAVN 29 (108)
Q Consensus 3 ~~~~~~~l~i~~v~~~d~G~Y~C~~~~ 29 (108)
..++...|++.|+...++|.|.|.+.-
T Consensus 264 ~~~~~~~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 264 WASNGVDLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp E-TTSSSEEESS--GGG-EEEEEEEEE
T ss_pred ccCCCcceEecCCCcccCceEEEEEEE
Confidence 345566899999999999999999873
No 364
>KOG4597|consensus
Probab=81.79 E-value=1.7 Score=28.28 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR 39 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 39 (108)
...|.|.+....|+|-|+|.+.+..|.....+.
T Consensus 256 tcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~ 288 (560)
T KOG4597|consen 256 TCQLVICNEWQADAGWYTCSARCGAGFLRRDVP 288 (560)
T ss_pred eeeEEEcchhhcCCCceeeccccccceeeccce
Confidence 567899999999999999999999887776655
No 365
>PHA03282 envelope glycoprotein E; Provisional
Probab=81.60 E-value=2.3 Score=27.71 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCCceEEEEEEECC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNS 30 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~ 30 (108)
+.+|.|.+++.+|+|.|+..+...
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred cceEEEeeccccCCceEEEEecCC
Confidence 557999999999999999987543
No 366
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=78.08 E-value=7.1 Score=19.65 Aligned_cols=55 Identities=7% Similarity=0.082 Sum_probs=28.7
Q ss_pred EEecC-CEEEEeeCCEecCCCCCEEEEEeCCE---EEEEEccCCCCCCeEEEEEEEcCCc
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSKYFQMSKEGDS---YVLRISEAFPEDEGQYKCIATNQGG 95 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~c~~~n~~~ 95 (108)
..+.| ..++|+.+...... .......++.. +.+.+......|.-.++|.+.+..-
T Consensus 27 a~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 27 AEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred cCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 45778 99999965322110 00001111111 1344444444567789999988754
No 367
>PHA03281 envelope glycoprotein E; Provisional
Probab=77.53 E-value=3.4 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=21.9
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEE
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAV 28 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~ 28 (108)
.++...|.+.++...++|.|.|.+.
T Consensus 471 ~~n~vdL~F~nApasaSGLYVfVl~ 495 (642)
T PHA03281 471 HDGGSALKFVDAAESLSGLYVFIIH 495 (642)
T ss_pred cCCCcceEeccCCcccCceEEEEEE
Confidence 3456789999999999999999987
No 368
>PHA03286 envelope glycoprotein E; Provisional
Probab=77.15 E-value=3.7 Score=26.64 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEcCCCCCCceEEEEEEE
Q psy2149 9 SLVLNTTYEEDSGLFTLRAV 28 (108)
Q Consensus 9 ~l~i~~v~~~d~G~Y~C~~~ 28 (108)
+|.+.|+...|+|.|.|.+.
T Consensus 308 nL~f~nA~~s~SGLYVfVl~ 327 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVAL 327 (492)
T ss_pred ceeecCCCcccCceEEEEEE
Confidence 58999999999999999987
No 369
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=75.60 E-value=9.6 Score=19.91 Aligned_cols=74 Identities=5% Similarity=-0.043 Sum_probs=40.5
Q ss_pred CCceEEEEEEECCCcCe-EEEEEEEecCCEEEEe---eCCEecC--CCCCEEEEE--eCCEEEEEEccCCCCCCeEEEEE
Q psy2149 18 EDSGLFTLRAVNSAGQV-ESTARLTVKTINIKWQ---KGDKIIK--PSKYFQMSK--EGDSYVLRISEAFPEDEGQYKCI 89 (108)
Q Consensus 18 ~d~G~Y~C~~~~~~~~~-~~~~~~~~~p~~~~w~---~~~~~~~--~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~ 89 (108)
..+-..+|.+....-.. .....+++.|..++|. ....... ...++.... ......|.+.+++.+|.+.|.|.
T Consensus 13 ~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca 92 (115)
T cd05721 13 NGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCK 92 (115)
T ss_pred CCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEE
Confidence 33457889886543333 3333355555222332 1111111 123333333 24556899999999999999997
Q ss_pred EE
Q psy2149 90 AT 91 (108)
Q Consensus 90 ~~ 91 (108)
.+
T Consensus 93 ~e 94 (115)
T cd05721 93 IE 94 (115)
T ss_pred ee
Confidence 64
No 370
>PHA03289 envelope glycoprotein I; Provisional
Probab=72.99 E-value=8.5 Score=23.94 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
..-|.|.+.+.+|+|.|..+++....
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCC
Confidence 44789999999999999999986543
No 371
>PHA03290 envelope glycoprotein I; Provisional
Probab=71.85 E-value=10 Score=23.77 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
...-|.|.+...+|+|.|..+++...
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldg 152 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDH 152 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCC
Confidence 35678999999999999999998553
No 372
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=71.85 E-value=1.2 Score=28.65 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcC
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQ 33 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~ 33 (108)
...|.|.+++.+|+|.|+-...+..+.
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~ 114 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGW 114 (439)
T ss_dssp ---------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCc
Confidence 457999999999999999988766544
No 373
>PHA03292 envelope glycoprotein I; Provisional
Probab=69.70 E-value=14 Score=23.59 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
...-|.|.+.+.+|+|.|..++....
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCC
Confidence 34678999999999999999998654
No 374
>COG5475 Uncharacterized small protein [Function unknown]
Probab=64.67 E-value=12 Score=16.74 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=15.8
Q ss_pred EEEEcCCCCCCceEEEEEEECCCcCe
Q psy2149 9 SLVLNTTYEEDSGLFTLRAVNSAGQV 34 (108)
Q Consensus 9 ~l~i~~v~~~d~G~Y~C~~~~~~~~~ 34 (108)
.++|...... |.|.|.-.+..+..
T Consensus 19 ~Mtvs~~ss~--Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 19 RMTVSGYSSD--GMYECRWFDGYGVK 42 (60)
T ss_pred eEEEeccccC--CeEEEEEecCCCcc
Confidence 4566666543 89999877766543
No 375
>PHA03291 envelope glycoprotein I; Provisional
Probab=62.83 E-value=23 Score=22.53 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=22.5
Q ss_pred CEEEEEEcCCCCCCceEEEEEEECCCc
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVNSAG 32 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~~~~ 32 (108)
.+.-|.|.+...+|+|.|..+++....
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdga 153 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEGA 153 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCCC
Confidence 456789999999999999999985543
No 376
>PHA03286 envelope glycoprotein E; Provisional
Probab=61.59 E-value=24 Score=23.22 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCCCceEEEEEEECCCcCeEEEE
Q psy2149 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTA 38 (108)
Q Consensus 7 ~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 38 (108)
...|+|.+++..++|.|+--..|..+....+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~v 157 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDV 157 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEE
Confidence 45799999999999999999988876554443
No 377
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=61.57 E-value=17 Score=20.74 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=23.6
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEECCC
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAVNSA 31 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~~~~ 31 (108)
.++...+++..|...-+|-|+|.+....
T Consensus 89 ~gG~i~mt~hQVN~DGaGP~~C~iD~tg 116 (184)
T PF11327_consen 89 AGGSISMTIHQVNADGAGPFTCDIDETG 116 (184)
T ss_pred CCCEEEEEEEEecCCCCcCeEEEECCCC
Confidence 4678899999999988999999997543
No 378
>PHA03240 envelope glycoprotein M; Provisional
Probab=58.09 E-value=4.6 Score=23.53 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=18.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEE
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRA 27 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~ 27 (108)
.+.+|.|.+|..+|.|+|.-.-
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k 124 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKK 124 (258)
T ss_pred ccceEEEEEEeecCcchhhhcc
Confidence 4678999999999999996433
No 379
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=57.17 E-value=29 Score=19.30 Aligned_cols=19 Identities=32% Similarity=0.768 Sum_probs=13.2
Q ss_pred CCCCCeEEEEEEEcCCcce
Q psy2149 79 FPEDEGQYKCIATNQGGQV 97 (108)
Q Consensus 79 ~~~d~g~y~c~~~n~~~~~ 97 (108)
...|.+.|+|.+..+.+..
T Consensus 68 ~s~d~~~~sC~I~RPqgkS 86 (158)
T PF10572_consen 68 LSDDNGHYSCIIWRPQGKS 86 (158)
T ss_pred ecCCCCceEEEEECCCCCc
Confidence 3456788888888776633
No 380
>PF11088 RL11D: Glycoprotein encoding membrane proteins RL5A and RL6; InterPro: IPR024349 This entry represents RL5A and RL6 from human herpesvirus 5. RL5A and RL6 are members of the RL11 family, which are predicted to encode membrane glycoproteins [].
Probab=52.26 E-value=9.1 Score=19.20 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCCceEEEEEEEC
Q psy2149 8 ASLVLNTTYEEDSGLFTLRAVN 29 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~~~ 29 (108)
-+|.|.|++..+.|.|-..-..
T Consensus 60 tsL~lCN~T~g~eg~ydl~r~~ 81 (98)
T PF11088_consen 60 TSLTLCNMTQGNEGVYDLGRRF 81 (98)
T ss_pred CcEEEEeeeccCcccEeeeeee
Confidence 3689999999999999776543
No 381
>KOG0613|consensus
Probab=51.79 E-value=7 Score=28.73 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=14.5
Q ss_pred EEecC-CEEEEeeCCEecCCCC
Q psy2149 40 LTVKT-INIKWQKGDKIIKPSK 60 (108)
Q Consensus 40 ~~~~p-~~~~w~~~~~~~~~~~ 60 (108)
..+.| +...|+..+..+.++.
T Consensus 213 s~gqp~~~~~~~~~g~~i~~~~ 234 (1205)
T KOG0613|consen 213 SAGQPEPLERWEILGELIAPGS 234 (1205)
T ss_pred ecCCCccchhhhhcccccCCCC
Confidence 55677 8888888776655443
No 382
>PF15096 G6B: G6B family
Probab=49.07 E-value=12 Score=21.40 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=12.5
Q ss_pred CCCCceEEEEEEECCC
Q psy2149 16 YEEDSGLFTLRAVNSA 31 (108)
Q Consensus 16 ~~~d~G~Y~C~~~~~~ 31 (108)
...|+|.|.|......
T Consensus 82 s~GDSGTFfCkGr~e~ 97 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQEE 97 (224)
T ss_pred hcCCccceEecCcccc
Confidence 4789999999976543
No 383
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=44.55 E-value=45 Score=17.02 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=23.3
Q ss_pred CEEEEeeCCEecCCCCCEE-E---EEeCCEEEEEEccCCCCCCe-EEEEEEEcC
Q psy2149 45 INIKWQKGDKIIKPSKYFQ-M---SKEGDSYVLRISEAFPEDEG-QYKCIATNQ 93 (108)
Q Consensus 45 ~~~~w~~~~~~~~~~~~~~-~---~~~~~~~~l~i~~~~~~d~g-~y~c~~~n~ 93 (108)
..+.|+++...+....-.. + +.......+++.. .++|.| .|.|.+.-.
T Consensus 33 l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 33 LEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred eEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 5678887665443221000 0 0001112344443 366655 899998643
No 384
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=44.13 E-value=45 Score=16.96 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=18.2
Q ss_pred EEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy2149 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANL 103 (108)
Q Consensus 73 l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l 103 (108)
+.+-.....+.-..+|.+......-..++.|
T Consensus 66 y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 66 YRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 3333444556678899998764444444444
No 385
>KOG0613|consensus
Probab=41.99 E-value=38 Score=25.43 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=21.5
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEE
Q psy2149 72 VLRISEAFPEDEGQYKCIATNQGGQVVL 99 (108)
Q Consensus 72 ~l~i~~~~~~d~g~y~c~~~n~~~~~~~ 99 (108)
.+.+..+...+.+.+.|.+.|..|....
T Consensus 394 ~~~~~~~~~~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 394 TYTIKDAGPGEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred chhhhhcCcccccccccceeccCCcccc
Confidence 5666677778888999999988776544
No 386
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=40.72 E-value=15 Score=14.70 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=7.8
Q ss_pred CCCceEEEEE
Q psy2149 17 EEDSGLFTLR 26 (108)
Q Consensus 17 ~~d~G~Y~C~ 26 (108)
..+.|.|.|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 5678999994
No 387
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=39.26 E-value=38 Score=15.01 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=10.6
Q ss_pred CCeEEEEEEEcCCc
Q psy2149 82 DEGQYKCIATNQGG 95 (108)
Q Consensus 82 d~g~y~c~~~n~~~ 95 (108)
.+..|.|.+.|..|
T Consensus 9 ssnsflctvqnkng 22 (65)
T PF13220_consen 9 SSNSFLCTVQNKNG 22 (65)
T ss_pred CCCceEEEEecccH
Confidence 35678999888765
No 388
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=38.81 E-value=55 Score=16.39 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=10.0
Q ss_pred CCCceEEEEEEE-CCCc
Q psy2149 17 EEDSGLFTLRAV-NSAG 32 (108)
Q Consensus 17 ~~d~G~Y~C~~~-~~~~ 32 (108)
-+--|.|.|+.. ++.+
T Consensus 72 s~~~GayyCegk~r~~~ 88 (96)
T PF10430_consen 72 SEAIGAYYCEGKVRDEV 88 (96)
T ss_dssp SS--EEEEEEEEETTEE
T ss_pred ccccceEEEEEEecCce
Confidence 345689999998 4433
No 389
>PHA03189 UL14 tegument protein; Provisional
Probab=38.41 E-value=1e+02 Score=19.46 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=14.4
Q ss_pred cCCCCCCeEEEEEEEcCCc
Q psy2149 77 EAFPEDEGQYKCIATNQGG 95 (108)
Q Consensus 77 ~~~~~d~g~y~c~~~n~~~ 95 (108)
++..+.+|.|.|...|...
T Consensus 139 ~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEEecccceEEEEeccccc
Confidence 4455668999999988653
No 390
>KOG4637|consensus
Probab=37.06 E-value=67 Score=20.85 Aligned_cols=31 Identities=10% Similarity=0.266 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCCCCceEEEEEEECCCcCeEEE
Q psy2149 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 37 (108)
...+++.|+. .+|.|.|.|.+........+.
T Consensus 351 ~~dGtFLIR~--ss~~g~yalSV~~~~~V~HCl 381 (464)
T KOG4637|consen 351 KPDGTFLIRE--SSKGGCYALSVVHDGEVKHCL 381 (464)
T ss_pred CCCCeEEEee--ccCCCceEEEEEECCceeeeE
Confidence 3466788887 678999999997665444443
No 391
>PF01082 Cu2_monooxygen: Copper type II ascorbate-dependent monooxygenase, N-terminal domain; InterPro: IPR000323 Copper type II, ascorbate-dependent monooxygenases [] are a class of enzymes that requires copper as a cofactor and which uses ascorbate as an electron donor. This family contains two related enzymes, Dopamine-beta-monooxygenase (1.14.17.1 from EC) and Peptidyl-glycine alpha-amidating monooxygenase (1.14.17.3 from EC). There are a few regions of sequence similarities between these two enzymes, two of these regions contain clusters of conserved histidine residues which are most probably involved in binding copper.; GO: 0004497 monooxygenase activity, 0005507 copper ion binding, 0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=32.45 E-value=77 Score=16.84 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=15.5
Q ss_pred EEEEEEcCC-CCCCceEEEEEEECC
Q psy2149 7 TASLVLNTT-YEEDSGLFTLRAVNS 30 (108)
Q Consensus 7 ~~~l~i~~v-~~~d~G~Y~C~~~~~ 30 (108)
...|...++ ..++.-.|.|.+...
T Consensus 3 ~~dl~~~~v~vP~~~t~Y~C~~~~l 27 (132)
T PF01082_consen 3 TFDLLMPNVTVPSQDTTYWCFVFKL 27 (132)
T ss_dssp -EEEE-SSB---SSSSEEEEEEEE-
T ss_pred eEEEEcCCcCcCCCCCeEEEEEEEC
Confidence 356788888 577788999998744
No 392
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=31.07 E-value=86 Score=16.38 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=21.9
Q ss_pred EEEEccCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy2149 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103 (108)
Q Consensus 72 ~l~i~~~~~~d~g~y~c~~~n~~~~~~~~~~l 103 (108)
.|++....+-+.-.++|......|.....+++
T Consensus 94 vL~vt~t~Kf~h~rfTCVL~t~DGvskk~iw~ 125 (126)
T PF05566_consen 94 VLHVTDTEKFAHYRFTCVLTTIDGVSKKNIWL 125 (126)
T ss_dssp EEEE--TTTTTTEEEEEEEEETTEEEEE----
T ss_pred eeeecchhhccceeEEEEEEcCCccccccccC
Confidence 57777888888889999999988877776654
No 393
>KOG0200|consensus
Probab=29.47 E-value=57 Score=22.39 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCCCceEEEEEEEC
Q psy2149 6 TTASLVLNTTYEEDSGLFTLRAVN 29 (108)
Q Consensus 6 ~~~~l~i~~v~~~d~G~Y~C~~~~ 29 (108)
....+.+..+...|.|.|+|.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec
Confidence 456788889999999999999998
No 394
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=28.97 E-value=59 Score=15.52 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=17.0
Q ss_pred EEcCCCCCCceEEEEEEECCCcCe
Q psy2149 11 VLNTTYEEDSGLFTLRAVNSAGQV 34 (108)
Q Consensus 11 ~i~~v~~~d~G~Y~C~~~~~~~~~ 34 (108)
.|..+..+|.|.|...+....|..
T Consensus 44 ~v~~ve~~~~g~yev~~~~~dG~~ 67 (83)
T PF13670_consen 44 QVREVEFDDDGCYEVEARDKDGKK 67 (83)
T ss_pred ceEEEEEcCCCEEEEEEEECCCCE
Confidence 567777777778888876665543
No 395
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=27.06 E-value=68 Score=14.20 Aligned_cols=23 Identities=4% Similarity=0.076 Sum_probs=11.6
Q ss_pred EEEEcCCC---CCCceEEEEEEECCC
Q psy2149 9 SLVLNTTY---EEDSGLFTLRAVNSA 31 (108)
Q Consensus 9 ~l~i~~v~---~~d~G~Y~C~~~~~~ 31 (108)
.+++..+. ..+.+.|.|+=....
T Consensus 15 ~MTV~~v~~~~~~~~~~v~C~WFd~~ 40 (53)
T PF09926_consen 15 RMTVTEVGPNAGASGGWVECQWFDGH 40 (53)
T ss_pred CeEEEEccccccCCCCeEEEEeCCCC
Confidence 34444443 235567777654433
No 396
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=26.37 E-value=1.3e+02 Score=16.80 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=18.3
Q ss_pred eCCEEEEEEcCCCCCCceEEEEEEE
Q psy2149 4 EGTTASLVLNTTYEEDSGLFTLRAV 28 (108)
Q Consensus 4 ~~~~~~l~i~~v~~~d~G~Y~C~~~ 28 (108)
.+|...++|.+-.....|.|.|.+.
T Consensus 80 ~~G~i~y~lp~~~l~~~G~v~a~~~ 104 (170)
T PF10651_consen 80 TNGIIQYTLPDEFLKHVGKVKAQLF 104 (170)
T ss_dssp TTTEEEEE--TTTTHSSEEEEEEEE
T ss_pred cCcEEEEEECHHHhccCcEEEEEEE
Confidence 3567788888888888999988875
No 397
>COG4935 Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.48 E-value=1.1e+02 Score=17.54 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=13.7
Q ss_pred CCEEEEEEcCCCCCCceEEE
Q psy2149 5 GTTASLVLNTTYEEDSGLFT 24 (108)
Q Consensus 5 ~~~~~l~i~~v~~~d~G~Y~ 24 (108)
.|+..|.|.+...+|.|.+.
T Consensus 99 ~G~W~L~V~D~~~g~~Gtf~ 118 (177)
T COG4935 99 EGNWRLEVQDLAGGHTGTFH 118 (177)
T ss_pred CceEEEEEEecCCCceeEEE
Confidence 46677777777777777664
No 398
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=25.04 E-value=73 Score=17.68 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=13.4
Q ss_pred EEEEEcCCCCCCceEE
Q psy2149 8 ASLVLNTTYEEDSGLF 23 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y 23 (108)
+.-+|.|++..+.|.|
T Consensus 22 HIstIKnvs~~~eg~~ 37 (152)
T PF08644_consen 22 HISTIKNVSKSDEGDY 37 (152)
T ss_pred EeeeEEcceeccCCCe
Confidence 4568999999999987
No 399
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=22.28 E-value=21 Score=16.57 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=1.8
Q ss_pred EEcCCCCCCceEEEE
Q psy2149 11 VLNTTYEEDSGLFTL 25 (108)
Q Consensus 11 ~i~~v~~~d~G~Y~C 25 (108)
.|...+..|+|.|..
T Consensus 32 ~iyR~rkkdEGSY~l 46 (64)
T PF01034_consen 32 LIYRMRKKDEGSYDL 46 (64)
T ss_dssp -----S------SS-
T ss_pred HHHHHHhcCCCCccC
Confidence 445556677777653
No 400
>PF06174 DUF987: Protein of unknown function (DUF987); InterPro: IPR009329 This is a family of bacterial proteins that are related to the hypothetical protein YeeT.
Probab=21.51 E-value=32 Score=15.78 Aligned_cols=17 Identities=35% Similarity=0.716 Sum_probs=10.5
Q ss_pred EEEEccCCCCC-CeEEEE
Q psy2149 72 VLRISEAFPED-EGQYKC 88 (108)
Q Consensus 72 ~l~i~~~~~~d-~g~y~c 88 (108)
.|.+..-+++| .|.|.|
T Consensus 49 vLAVyaERR~Dr~gPY~~ 66 (66)
T PF06174_consen 49 VLAVYAERRQDRNGPYAC 66 (66)
T ss_pred eeeeeeeeecccCCCccC
Confidence 45555555555 677776
No 401
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=21.37 E-value=43 Score=17.14 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=13.6
Q ss_pred EEEEEEECCCcCeEEEEEEEecC-CEEEE
Q psy2149 22 LFTLRAVNSAGQVESTARLTVKT-INIKW 49 (108)
Q Consensus 22 ~Y~C~~~~~~~~~~~~~~~~~~p-~~~~w 49 (108)
.|+|.+........+-....|.+ |.-.|
T Consensus 66 ~F~C~vd~d~~~V~sF~~~vG~~IP~s~W 94 (101)
T PF06059_consen 66 SFRCEVDPDATKVTSFSFKVGDPIPRSEW 94 (101)
T ss_pred EEEEEECCCceEEEEEeeccCCcCCHHHH
Confidence 56777765554443332233444 44334
No 402
>PHA02737 hypothetical protein; Provisional
Probab=21.31 E-value=1.2e+02 Score=14.54 Aligned_cols=20 Identities=0% Similarity=-0.188 Sum_probs=13.6
Q ss_pred EEEEEcCCCCCCceEEEEEE
Q psy2149 8 ASLVLNTTYEEDSGLFTLRA 27 (108)
Q Consensus 8 ~~l~i~~v~~~d~G~Y~C~~ 27 (108)
+.+.+..+-.++-+.|.|.-
T Consensus 13 ~VVqF~elpf~giddYvCVP 32 (72)
T PHA02737 13 HVAKFAELHFDGIDDYVCVP 32 (72)
T ss_pred EEEEEEecCcCCCcCEEEeC
Confidence 34566666677777888864
No 403
>KOG0645|consensus
Probab=21.19 E-value=2.3e+02 Score=17.82 Aligned_cols=8 Identities=38% Similarity=1.194 Sum_probs=4.6
Q ss_pred CeEEEEEE
Q psy2149 83 EGQYKCIA 90 (108)
Q Consensus 83 ~g~y~c~~ 90 (108)
.+.|.|.+
T Consensus 137 ddEfec~a 144 (312)
T KOG0645|consen 137 DDEFECIA 144 (312)
T ss_pred CCcEEEEe
Confidence 34677754
No 404
>PRK05508 methionine sulfoxide reductase B; Provisional
Probab=21.04 E-value=59 Score=17.25 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=10.9
Q ss_pred CCCceEEEEEEECC
Q psy2149 17 EEDSGLFTLRAVNS 30 (108)
Q Consensus 17 ~~d~G~Y~C~~~~~ 30 (108)
..+.|.|.|.+-..
T Consensus 28 ~~~~G~Y~C~~Cg~ 41 (119)
T PRK05508 28 FFEKGTYVCKQCGA 41 (119)
T ss_pred cCCCeEEEecCCCC
Confidence 45789999998654
Done!